<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 20:37:16"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279552" ref_strand="+" ref_description="SGN-E279552 [cLER-5-J15]">
      <seq>cagtgttcctcggacagacattatatttttctgttcgcctaataatccaactggttcggcggcatctagggagcagctgactaaattggtgcaatttgctaaagataatggctcgatccttgtttatgattctgcatatgctatgtatatatgtgatgacagtccaaagtccatctttgagattcctggagccaaagaggttgccattgaggtttcatcattttcgaagtatgctgggttcactggtgttcgtttagggtggactgccattcccaaagcactcctatattctgatggatttcctgtagcaaaagacttcaatcgcattgtttgtacaagcttcaatggtgcatccaacattgctcaagctggtggtctggcttgcctttcacctgatggtttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1559" stop="61"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1259" g_stop="1061" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1060" i_stop="567" i_length="494">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="566" g_stop="361" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="405" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E279552" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1259" e_stop="1061"/>
          <exon e_start="566" e_stop="361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGTTCCTCGGACAGACATTATATTTTTCTGTTCGCCTAATAATCCAACTGGTTCGGCGGCATCTAGGGAGCAGCTGACTAAATTGGTGCAATTTGCTAAAGATAATGGCTCGATCCTTGTTTATGATTCTGCATATGCTATGTATATATGTGATGACAGTCCAAAGTCCATCTTTGAGATTCCTGGAGCCAAAGAGGTAAGTTCAGATCATGTTGCTTGGTTAACATTGAGCTTTACTTTGTTTTCTAGTGAAAGCTTCTGTTATCATTTGGTCAAACCTGTAGCATATAACAGTATAATATCGATGACAAACTCATAATGTCTGTGTATCAGTTCGTTAGCAGTTACTTATTGGTACATTGCTACTATAACGATCCTTCTACTTCTATTACTCTTTTTAATCCCTTTACAGCCATACCTTCTATTATTCTTTTTGATTCCATTACAGCCATACCTCAATTTCATGTTACTTAGAGTTGGCATATGCATTCTCACCATTCATTTCACTCTATTTGGACCTATTTCATTCTAGTTAATAGTGATTTGTGGATCTCAAACAGTAGAAATTCTCTATATTTACTATTGAGACACAAATCTCTAATGCTTTTATACAAAGTTTATTGAATGATTCTTACATTATTAATGGATTGTTCCATGTGATTCAGTAAGCTTATTGTACTGCACTTGCAGGTTGCCATTGAGGTTTCATCATTTTCGAAGTATGCTGGGTTCACTGGTGTTCGTTTAGGGTGGACTGCCATTCCCAAAGCACTCCTATATTCTGATGGATTTCCTGTAGCAAAAGACTTCAATCGCATTGTTTGTACAAGCTTCAATGGTGCATCCAACATTGCTCAAGCTGGTGGTCTGGCTTGCCTTTCACCTGATGGTTTCAA</genome_strand>
        <mrna_strand>CAGTGTTCCTCGGACAGACATTATATTTTTCTGTTCGCCTAATAATCCAACTGGTTCGGCGGCATCTAGGGAGCAGCTGACTAAATTGGTGCAATTTGCTAAAGATAATGGCTCGATCCTTGTTTATGATTCTGCATATGCTATGTATATATGTGATGACAGTCCAAAGTCCATCTTTGAGATTCCTGGAGCCAAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCATTGAGGTTTCATCATTTTCGAAGTATGCTGGGTTCACTGGTGTTCGTTTAGGGTGGACTGCCATTCCCAAAGCACTCCTATATTCTGATGGATTTCCTGTAGCAAAAGACTTCAATCGCATTGTTTGTACAAGCTTCAATGGTGCATCCAACATTGCTCAAGCTGGTGGTCTGGCTTGCCTTTCACCTGATGGTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314513" ref_strand="+" ref_description="SGN-E314513 [cTOB-1-K21]">
      <seq>ttcagcaaagtttttctacttcaatctcttcatcagcatctacttttctgggtcagaacaaactccgtttcaggaatcagaatgtgtcaatgccaggcaaaaccagtggtattgtcagatgtgttgcaacaccctctacggagaaaacttcttacaagacacaggtctcccgcaatgaaaacttagcgaaacttcaagctggttatctgtttcctgagatcgcaagaaggagatctgcacacatgttgaaacatcctgatgctcaaattataagccttggaattggtgacactaccgagcccattcctgaagtcataacttctgccatggcaaagagagcacatgaactgtcaacattaaatggttacagtggttatggtgctgagcaaggagaaaaacaacttagagcctccattgcttctacctattatgcaaatgttggactagaagaaaatgagatcttcgtttctgatggtgccaaaagtgatatatctcgacttcaggttctttttggatctaatgtgagtatggctgtgcaagatccatcatacccggcttatgtggactcgagtgttattatgggtcaaactggtcagtttcagaaggatgtggagaagtatgggaatattgcatacatgagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4981" stop="993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4681" g_stop="4609" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4608" i_stop="4002" i_length="607">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4001" g_stop="3925" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="150" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3924" i_stop="3552" i_length="373">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3551" g_stop="3484" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="218" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3483" i_stop="3111" i_length="373">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.210" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3110" g_stop="2994" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="335" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2993" i_stop="2661" i_length="333">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2660" g_stop="2598" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="398" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2597" i_stop="2037" i_length="561">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2036" g_stop="1932" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="503" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="1931" i_stop="1845" i_length="87">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="1844" g_stop="1794" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="554" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="1793" i_stop="1382" i_length="412">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="1381" g_stop="1293" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="643" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E314513" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4681" e_stop="4609"/>
          <exon e_start="4001" e_stop="3925"/>
          <exon e_start="3551" e_stop="3484"/>
          <exon e_start="3110" e_stop="2994"/>
          <exon e_start="2660" e_stop="2598"/>
          <exon e_start="2036" e_stop="1932"/>
          <exon e_start="1844" e_stop="1794"/>
          <exon e_start="1381" e_stop="1293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCAAAGTCTTTCTACTTCAATCTCTTCATCAGCATCTACTTTTCTGGGTCAGAACAAACTCCGTTTCAGGTACCCAATTTAATAATCTTACATATTTTCTTTCATTTTGTTGATTCAGTTCCAGTTTATTCGTTTATTTTGAATCTTCATCATCTGCGTTAGATATAGATATTGCTTTAAGCATTAGATGAAGCAGTAGAGAAGAAATGTCCAATATGGGTTCAGCATTTTGACTTTGTTATGTATTTTAATGGGAAGAAGGTAATACTGTTCTCATGGGAAAAAGGAGTCCTTTTTTCTTCTGGTTTAATCTTGTACTTGCACTGATTATTGGGTTTTTTATTCTCCCAAATTCAAATGGAAAAAGGTGACCTTTTTGTGGTTTGTACTGATTCTTGAATTTGTTTCTTTATAAATTGTTTAATCTAAAAATATTTGATTCTGTTTTTTTTCTTAGTGTTCTCATTTCGACTAACATGAAGCTAAAGACTCTCCTTTTTTCCATATTAAACAAAGTTTCCTGCATTTACGTTCTAGGATAATTTTAGTAGTTTATGAACTGACGGGAATCTCATCTGGATTGGTAGTATAACAAGATTAACTCAATAAAAAACTATGGTTGCTTCCTTAATTCTTTGCTAATTCTAATGCATAAAGTGTGCATTAATTGTTTCAGGAATCAGAATGTGTCAATGCCAGGCAAAACCAGTGGTATTGTCAGATGTGTTGCAACACCCTCTACGGAGAAAACTTGTAAGCCTTTATTTTAGTGTTGGTTTCCAGTTATATATTGCCAAGTTGAAATGAGAATAGTAGACTTGCGAGCCTGTGCAATGTGGATCAGTTAGAGCCTTTGGCAATTAATGTTGAGAACTTTAAACTAATCAATGTATTGCATATAAATTATTTCAACTTGCTGAAAAAGCAAATTTAAGACTCAAAATGTTTGCTACATGCACGTTTTTGAAATGCAAGAATTGTAAAATTATTGTCTTTCAACAATAACAAAAAGAAAACAACTGTCAGTTTAGGTGAGGTCTTAGTCTCATCTGTATCAGTCCATTCAAATAGCTGTGCATTCTGTTAACATTTGACTGCGCTAACGAAATTTCTGTTTGTCTTGAAGCTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAGGTCTGTATTTCAACTGGTCAATTGTCATTAAGTTGATTGCTGTTTATCTGTATTTTTAAGGTACTTTGCTATAGAAGATGTAGCATTGCTTTTGGGAACATGCAAATAAAATATTGATTTAGATGAAATTGCAGTAATTTGGAATCACGATAAGCCAGTGAGCAAATTTAGTTACCTGAAGCAAAATTATTTGCTTTTTTAGCTGAATTTGGATGACTTATTATGTATCTTTACCTCTCTATGCTTCCATCCTGAAATAGGAGAAATAATTCAATTCTTTATAGTAATACACTCAAAGAGAACTCTTATTTTGTAAACCATCTCTCCTACCTGCATCGAGTTAAGTTCTAAACAATATCTTTGGTGAAGTTAGATCGCAAGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGGTGACACTACCGAGCCCATTCCTGAAGTCATAACTTCTGCCATGGCAAAGGTAATACTGATATCTCTATCATACTATAGTTTTTTGTTATGGGTCAAAACTTCGAAGTTTACTGTATTTTTGTGTCCTATTCTGCCTGACCAATGATGGGATTACTAACAAAAATCATGTAGCTGGTAACACTTGGTTTTATACTAGACATCTGTCTAAATATTTCTGTTGATGAAAAATAAAATATTTCTGTTGATAGATTTCAGCATATGCTTACATAGACTACCATTTAACTTGATAGGTAGTGTGTATTTTTAATCTATTCTGCTTATTGAACTATAAGTCGATAACTTACTTCCTGTTCTTGATTTTGTTTTCTTTGCTCATTTGCAGAGAGCACATGAACTGTCAACATTAAATGGTTACAGTGGTTATGGTGCTGAGCAAGGAGAAAAAGTAAGTAGTGCCCCCTCTCGTCATATTTCAGTAATATGATATTAGCTCTACTATTTATTGTCCAATCCTTGTTTCTCTTCCTTCTTTTGCTACAATAATAATGGTTCTGGCCTTCACTGATAGTTTGTCTTTCCTCGTTTTGTACCAATTTGATTGTTCATTTGTCCTTTTCTTTCCTCAAATACATTGCAATATTCTTTATTCAGGTATCCACTCAATAAAGTTAAAAAACTTCCTCTTCTATTCATAACGTCATTAAGGGATGTGCAGATGTGCAGCTGAAATTTCCATTTCTTGGATCGACAATAATCTATTACTCTTTGCAATTTGCTTTTTATTCAACAAATTCTTGGTTTGCCTACCGAGTAAAGAAAAGAGATGTGAAATGTTTCATGTTTGGTGTTGTCAAGCATCATTATTTTGGATCCGTACTTTAAGATCGTAAGAGAAAATTTGTCTTTGGTCACCATATTTGTTATTCATAGCATTTAATCCGTGATTCAAATGTAAATTCAGCTGTCAGAATAACTCTGAATACATTGATTGTTTCTGCATGAGCAGCAACTTAGAGCCTCCATTGCTTCTACCTATTATGCAAATGTTGGACTAGAAGAAAATGAGATCTTCGTTTCTGATGGTGCCAAAAGTGATATATCTCGACTTCAGGTCTGGTTTACTCTGCATTTAGTGGGCTTTTCAAATTACTGAGCGGTCTTTCACTATCAGTTTATGAATTTCTTCACTGTATTGTAGGTTCTTTTTGGATCTAATGTGAGTATGGCTGTGCAAGATCCATCATACCCGGTAAATGTTTCAGGCTTATACCTCTGTTCTTCTCTATTATAGTATTATGACACAAATGAAAAAGAGTAGTTCGAGGGCAGCCCATGCTCATCCAGGATACCTGAAGATTGTAGATTAGCCATGCCTATTTTGTAATATGATTTTTCACATCATTGTGATATTTAAGTGAAGTGGTGCTACTTAATAACTTAGCACTAATTTTTATACTTTGTAAAAGTTATTGATATGTCTTTTGTTATTATCATTAATTCATTATTGCATCTAATTGCACCTTTTCCTTTTATTTGGTGCAATCTTTTTATTGTCTGTTAGACTACTCCGTGTTTTCTTAATAGGCCTTGGAGAAAGGCTCTCTTATGTGATGGTGTGTGTAAGATTCTGAAATGTGCGTTGATTGTTGTTTCTACTGTAGGCTTATGTGGACTCGAGTGTTATTATGGGTCAAACTGGTCAGTTTCAGAAGGATGTGGAGAAGTATGGGAATATTGCATACATGAGATG</genome_strand>
        <mrna_strand>TTCAGCAAAGTTTTTCTACTTCAATCTCTTCATCAGCATCTACTTTTCTGGGTCAGAACAAACTCCGTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAGAATGTGTCAATGCCAGGCAAAACCAGTGGTATTGTCAGATGTGTTGCAACACCCTCTACGGAGAAAACTT.....................................................................................................................................................................................................................................................................................................................................................................................CTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................ATCGCAAGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGGTGACACTACCGAGCCCATTCCTGAAGTCATAACTTCTGCCATGGCAAAG.............................................................................................................................................................................................................................................................................................................................................AGAGCACATGAACTGTCAACATTAAATGGTTACAGTGGTTATGGTGCTGAGCAAGGAGAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTTAGAGCCTCCATTGCTTCTACCTATTATGCAAATGTTGGACTAGAAGAAAATGAGATCTTCGTTTCTGATGGTGCCAAAAGTGATATATCTCGACTTCAG.......................................................................................GTTCTTTTTGGATCTAATGTGAGTATGGCTGTGCAAGATCCATCATACCCG............................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATGTGGACTCGAGTGTTATTATGGGTCAAACTGGTCAGTTTCAGAAGGATGTGGAGAAGTATGGGAATATTGCATACATGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326356" ref_strand="+" ref_description="SGN-E326356 [cTOC-14-N16]">
      <seq>tcagatgtgttgcaacaccctctacggagaaaacttcttacaagacacaggtcttccgcaatgaaaacttagcgaaacttcaagctggttatctgtttcctgagatcgcaagaaggagatctgcacacatgttgaaacatcctgatgctcaaattataagccttggaattggtgacactaccgagcccattcctgaagtcataacttctgccatggcaaagagagcacatgaactgtcaacattaaatggttacagtggttatggtgctgagcaaggagaaaaacaacttagagcctccattgcttctacctattatgcaaatgttggactagaagaaaatgagatcttcgtttctgatggtgccaaaagtgatatatctcgacttcaggttctttttggatctaatgtgagtatggctgtgcaagatccatcatacccggcttatgtggactcgagtgttattatgggtcaaactggtcagtttcagaaggatgtggagaagtatgggaatattgcatacatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4260" stop="996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3960" g_stop="3925" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3924" i_stop="3552" i_length="373">
            <donor d_prob="0.795" d_score="0.00"/>
            <acceptor a_prob="0.669" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3551" g_stop="3484" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="104" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3483" i_stop="3111" i_length="373">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.210" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3110" g_stop="2994" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="221" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2993" i_stop="2661" i_length="333">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2660" g_stop="2598" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="284" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2597" i_stop="2037" i_length="561">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2036" g_stop="1932" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="389" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1931" i_stop="1845" i_length="87">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="1844" g_stop="1794" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="440" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="1793" i_stop="1382" i_length="412">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="1381" g_stop="1296" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="526" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E326356" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3960" e_stop="3925"/>
          <exon e_start="3551" e_stop="3484"/>
          <exon e_start="3110" e_stop="2994"/>
          <exon e_start="2660" e_stop="2598"/>
          <exon e_start="2036" e_stop="1932"/>
          <exon e_start="1844" e_stop="1794"/>
          <exon e_start="1381" e_stop="1296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATGTGTTGCAACACCCTCTACGGAGAAAACTTGTAAGCCTTTATTTTAGTGTTGGTTTCCAGTTATATATTGCCAAGTTGAAATGAGAATAGTAGACTTGCGAGCCTGTGCAATGTGGATCAGTTAGAGCCTTTGGCAATTAATGTTGAGAACTTTAAACTAATCAATGTATTGCATATAAATTATTTCAACTTGCTGAAAAAGCAAATTTAAGACTCAAAATGTTTGCTACATGCACGTTTTTGAAATGCAAGAATTGTAAAATTATTGTCTTTCAACAATAACAAAAAGAAAACAACTGTCAGTTTAGGTGAGGTCTTAGTCTCATCTGTATCAGTCCATTCAAATAGCTGTGCATTCTGTTAACATTTGACTGCGCTAACGAAATTTCTGTTTGTCTTGAAGCTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAGGTCTGTATTTCAACTGGTCAATTGTCATTAAGTTGATTGCTGTTTATCTGTATTTTTAAGGTACTTTGCTATAGAAGATGTAGCATTGCTTTTGGGAACATGCAAATAAAATATTGATTTAGATGAAATTGCAGTAATTTGGAATCACGATAAGCCAGTGAGCAAATTTAGTTACCTGAAGCAAAATTATTTGCTTTTTTAGCTGAATTTGGATGACTTATTATGTATCTTTACCTCTCTATGCTTCCATCCTGAAATAGGAGAAATAATTCAATTCTTTATAGTAATACACTCAAAGAGAACTCTTATTTTGTAAACCATCTCTCCTACCTGCATCGAGTTAAGTTCTAAACAATATCTTTGGTGAAGTTAGATCGCAAGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGGTGACACTACCGAGCCCATTCCTGAAGTCATAACTTCTGCCATGGCAAAGGTAATACTGATATCTCTATCATACTATAGTTTTTTGTTATGGGTCAAAACTTCGAAGTTTACTGTATTTTTGTGTCCTATTCTGCCTGACCAATGATGGGATTACTAACAAAAATCATGTAGCTGGTAACACTTGGTTTTATACTAGACATCTGTCTAAATATTTCTGTTGATGAAAAATAAAATATTTCTGTTGATAGATTTCAGCATATGCTTACATAGACTACCATTTAACTTGATAGGTAGTGTGTATTTTTAATCTATTCTGCTTATTGAACTATAAGTCGATAACTTACTTCCTGTTCTTGATTTTGTTTTCTTTGCTCATTTGCAGAGAGCACATGAACTGTCAACATTAAATGGTTACAGTGGTTATGGTGCTGAGCAAGGAGAAAAAGTAAGTAGTGCCCCCTCTCGTCATATTTCAGTAATATGATATTAGCTCTACTATTTATTGTCCAATCCTTGTTTCTCTTCCTTCTTTTGCTACAATAATAATGGTTCTGGCCTTCACTGATAGTTTGTCTTTCCTCGTTTTGTACCAATTTGATTGTTCATTTGTCCTTTTCTTTCCTCAAATACATTGCAATATTCTTTATTCAGGTATCCACTCAATAAAGTTAAAAAACTTCCTCTTCTATTCATAACGTCATTAAGGGATGTGCAGATGTGCAGCTGAAATTTCCATTTCTTGGATCGACAATAATCTATTACTCTTTGCAATTTGCTTTTTATTCAACAAATTCTTGGTTTGCCTACCGAGTAAAGAAAAGAGATGTGAAATGTTTCATGTTTGGTGTTGTCAAGCATCATTATTTTGGATCCGTACTTTAAGATCGTAAGAGAAAATTTGTCTTTGGTCACCATATTTGTTATTCATAGCATTTAATCCGTGATTCAAATGTAAATTCAGCTGTCAGAATAACTCTGAATACATTGATTGTTTCTGCATGAGCAGCAACTTAGAGCCTCCATTGCTTCTACCTATTATGCAAATGTTGGACTAGAAGAAAATGAGATCTTCGTTTCTGATGGTGCCAAAAGTGATATATCTCGACTTCAGGTCTGGTTTACTCTGCATTTAGTGGGCTTTTCAAATTACTGAGCGGTCTTTCACTATCAGTTTATGAATTTCTTCACTGTATTGTAGGTTCTTTTTGGATCTAATGTGAGTATGGCTGTGCAAGATCCATCATACCCGGTAAATGTTTCAGGCTTATACCTCTGTTCTTCTCTATTATAGTATTATGACACAAATGAAAAAGAGTAGTTCGAGGGCAGCCCATGCTCATCCAGGATACCTGAAGATTGTAGATTAGCCATGCCTATTTTGTAATATGATTTTTCACATCATTGTGATATTTAAGTGAAGTGGTGCTACTTAATAACTTAGCACTAATTTTTATACTTTGTAAAAGTTATTGATATGTCTTTTGTTATTATCATTAATTCATTATTGCATCTAATTGCACCTTTTCCTTTTATTTGGTGCAATCTTTTTATTGTCTGTTAGACTACTCCGTGTTTTCTTAATAGGCCTTGGAGAAAGGCTCTCTTATGTGATGGTGTGTGTAAGATTCTGAAATGTGCGTTGATTGTTGTTTCTACTGTAGGCTTATGTGGACTCGAGTGTTATTATGGGTCAAACTGGTCAGTTTCAGAAGGATGTGGAGAAGTATGGGAATATTGCATACATGAG</genome_strand>
        <mrna_strand>TCAGATGTGTTGCAACACCCTCTACGGAGAAAACTT.....................................................................................................................................................................................................................................................................................................................................................................................CTTACAAGACACAGGTCTTCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................ATCGCAAGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGGTGACACTACCGAGCCCATTCCTGAAGTCATAACTTCTGCCATGGCAAAG.............................................................................................................................................................................................................................................................................................................................................AGAGCACATGAACTGTCAACATTAAATGGTTACAGTGGTTATGGTGCTGAGCAAGGAGAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTTAGAGCCTCCATTGCTTCTACCTATTATGCAAATGTTGGACTAGAAGAAAATGAGATCTTCGTTTCTGATGGTGCCAAAAGTGATATATCTCGACTTCAG.......................................................................................GTTCTTTTTGGATCTAATGTGAGTATGGCTGTGCAAGATCCATCATACCCG............................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATGTGGACTCGAGTGTTATTATGGGTCAAACTGGTCAGTTTCAGAAGGATGTGGAGAAGTATGGGAATATTGCATACATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719518" ref_strand="+" ref_description="SGN-E719518 [FC08AD08]">
      <seq>attagggttcttttaaaagcagcttttgggtcctgaaggctctactccactgagctacacaaggaaaaaatggcagctattcagcaaagtctttctacttcaatctcttcatcagcatctacttttctgggtcagaacaaactccgtttcaggaatcaaaatgtgtcaatgccaggcaaaaccagtggtattgtcagatgtgttgcaacaccctctacggagaaaacttcttacaagacacaggtctcccgcaatgaaaacttagcgaaacttcaagctggttatctgtttcctgagatcgcaagaaggagatctgcacacatgttgaaacatcctgatgctcaaattataagccttggaattggtgacactaccgagcccattcctgaagtcataacttctgccatggcaaagagagcacatgaactgtcaacattaaatggttacagtggttatggtgctgagcaaggagaaaaacaacttagagcctccattgcttctacctattatgcaaatgttggactacaagaaaatgagatcttcgtttctgatggtgccaaaagtgatatatctcgacttcaggttctttttggatctaatgtgagtatggctgtgcaagatccatcatacccggctaatgtggactcaagtgttattatgggtcaaactggtcagtttcagaaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5060" stop="1027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4760" g_stop="4609" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4608" i_stop="4002" i_length="607">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4001" g_stop="3925" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="229" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3924" i_stop="3552" i_length="373">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3551" g_stop="3484" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="297" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3483" i_stop="3111" i_length="373">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.210" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3110" g_stop="2994" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="414" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2993" i_stop="2661" i_length="333">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2660" g_stop="2598" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="477" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2597" i_stop="2037" i_length="561">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2036" g_stop="1932" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="582" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="1931" i_stop="1845" i_length="87">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="1844" g_stop="1794" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="633" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="1793" i_stop="1382" i_length="412">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="1381" g_stop="1327" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="688" r_length="55" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E719518" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4760" e_stop="4609"/>
          <exon e_start="4001" e_stop="3925"/>
          <exon e_start="3551" e_stop="3484"/>
          <exon e_start="3110" e_stop="2994"/>
          <exon e_start="2660" e_stop="2598"/>
          <exon e_start="2036" e_stop="1932"/>
          <exon e_start="1844" e_stop="1794"/>
          <exon e_start="1381" e_stop="1327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGGGTTCTTTTAAAAGCAGCTTTTGGGTTCTGAGGGCTCTACTCCACTGAGCTACACAAGGAAAAAATGGCAGCTATTCAGCAAAGTCTTTCTACTTCAATCTCTTCATCAGCATCTACTTTTCTGGGTCAGAACAAACTCCGTTTCAGGTACCCAATTTAATAATCTTACATATTTTCTTTCATTTTGTTGATTCAGTTCCAGTTTATTCGTTTATTTTGAATCTTCATCATCTGCGTTAGATATAGATATTGCTTTAAGCATTAGATGAAGCAGTAGAGAAGAAATGTCCAATATGGGTTCAGCATTTTGACTTTGTTATGTATTTTAATGGGAAGAAGGTAATACTGTTCTCATGGGAAAAAGGAGTCCTTTTTTCTTCTGGTTTAATCTTGTACTTGCACTGATTATTGGGTTTTTTATTCTCCCAAATTCAAATGGAAAAAGGTGACCTTTTTGTGGTTTGTACTGATTCTTGAATTTGTTTCTTTATAAATTGTTTAATCTAAAAATATTTGATTCTGTTTTTTTTCTTAGTGTTCTCATTTCGACTAACATGAAGCTAAAGACTCTCCTTTTTTCCATATTAAACAAAGTTTCCTGCATTTACGTTCTAGGATAATTTTAGTAGTTTATGAACTGACGGGAATCTCATCTGGATTGGTAGTATAACAAGATTAACTCAATAAAAAACTATGGTTGCTTCCTTAATTCTTTGCTAATTCTAATGCATAAAGTGTGCATTAATTGTTTCAGGAATCAGAATGTGTCAATGCCAGGCAAAACCAGTGGTATTGTCAGATGTGTTGCAACACCCTCTACGGAGAAAACTTGTAAGCCTTTATTTTAGTGTTGGTTTCCAGTTATATATTGCCAAGTTGAAATGAGAATAGTAGACTTGCGAGCCTGTGCAATGTGGATCAGTTAGAGCCTTTGGCAATTAATGTTGAGAACTTTAAACTAATCAATGTATTGCATATAAATTATTTCAACTTGCTGAAAAAGCAAATTTAAGACTCAAAATGTTTGCTACATGCACGTTTTTGAAATGCAAGAATTGTAAAATTATTGTCTTTCAACAATAACAAAAAGAAAACAACTGTCAGTTTAGGTGAGGTCTTAGTCTCATCTGTATCAGTCCATTCAAATAGCTGTGCATTCTGTTAACATTTGACTGCGCTAACGAAATTTCTGTTTGTCTTGAAGCTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAGGTCTGTATTTCAACTGGTCAATTGTCATTAAGTTGATTGCTGTTTATCTGTATTTTTAAGGTACTTTGCTATAGAAGATGTAGCATTGCTTTTGGGAACATGCAAATAAAATATTGATTTAGATGAAATTGCAGTAATTTGGAATCACGATAAGCCAGTGAGCAAATTTAGTTACCTGAAGCAAAATTATTTGCTTTTTTAGCTGAATTTGGATGACTTATTATGTATCTTTACCTCTCTATGCTTCCATCCTGAAATAGGAGAAATAATTCAATTCTTTATAGTAATACACTCAAAGAGAACTCTTATTTTGTAAACCATCTCTCCTACCTGCATCGAGTTAAGTTCTAAACAATATCTTTGGTGAAGTTAGATCGCAAGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGGTGACACTACCGAGCCCATTCCTGAAGTCATAACTTCTGCCATGGCAAAGGTAATACTGATATCTCTATCATACTATAGTTTTTTGTTATGGGTCAAAACTTCGAAGTTTACTGTATTTTTGTGTCCTATTCTGCCTGACCAATGATGGGATTACTAACAAAAATCATGTAGCTGGTAACACTTGGTTTTATACTAGACATCTGTCTAAATATTTCTGTTGATGAAAAATAAAATATTTCTGTTGATAGATTTCAGCATATGCTTACATAGACTACCATTTAACTTGATAGGTAGTGTGTATTTTTAATCTATTCTGCTTATTGAACTATAAGTCGATAACTTACTTCCTGTTCTTGATTTTGTTTTCTTTGCTCATTTGCAGAGAGCACATGAACTGTCAACATTAAATGGTTACAGTGGTTATGGTGCTGAGCAAGGAGAAAAAGTAAGTAGTGCCCCCTCTCGTCATATTTCAGTAATATGATATTAGCTCTACTATTTATTGTCCAATCCTTGTTTCTCTTCCTTCTTTTGCTACAATAATAATGGTTCTGGCCTTCACTGATAGTTTGTCTTTCCTCGTTTTGTACCAATTTGATTGTTCATTTGTCCTTTTCTTTCCTCAAATACATTGCAATATTCTTTATTCAGGTATCCACTCAATAAAGTTAAAAAACTTCCTCTTCTATTCATAACGTCATTAAGGGATGTGCAGATGTGCAGCTGAAATTTCCATTTCTTGGATCGACAATAATCTATTACTCTTTGCAATTTGCTTTTTATTCAACAAATTCTTGGTTTGCCTACCGAGTAAAGAAAAGAGATGTGAAATGTTTCATGTTTGGTGTTGTCAAGCATCATTATTTTGGATCCGTACTTTAAGATCGTAAGAGAAAATTTGTCTTTGGTCACCATATTTGTTATTCATAGCATTTAATCCGTGATTCAAATGTAAATTCAGCTGTCAGAATAACTCTGAATACATTGATTGTTTCTGCATGAGCAGCAACTTAGAGCCTCCATTGCTTCTACCTATTATGCAAATGTTGGACTAGAAGAAAATGAGATCTTCGTTTCTGATGGTGCCAAAAGTGATATATCTCGACTTCAGGTCTGGTTTACTCTGCATTTAGTGGGCTTTTCAAATTACTGAGCGGTCTTTCACTATCAGTTTATGAATTTCTTCACTGTATTGTAGGTTCTTTTTGGATCTAATGTGAGTATGGCTGTGCAAGATCCATCATACCCGGTAAATGTTTCAGGCTTATACCTCTGTTCTTCTCTATTATAGTATTATGACACAAATGAAAAAGAGTAGTTCGAGGGCAGCCCATGCTCATCCAGGATACCTGAAGATTGTAGATTAGCCATGCCTATTTTGTAATATGATTTTTCACATCATTGTGATATTTAAGTGAAGTGGTGCTACTTAATAACTTAGCACTAATTTTTATACTTTGTAAAAGTTATTGATATGTCTTTTGTTATTATCATTAATTCATTATTGCATCTAATTGCACCTTTTCCTTTTATTTGGTGCAATCTTTTTATTGTCTGTTAGACTACTCCGTGTTTTCTTAATAGGCCTTGGAGAAAGGCTCTCTTATGTGATGGTGTGTGTAAGATTCTGAAATGTGCGTTGATTGTTGTTTCTACTGTAGGCTTATGTGGACTCGAGTGTTATTATGGGTCAAACTGGTCAGTTTCAGAAGGATG</genome_strand>
        <mrna_strand>ATTAGGGTTCTTTTAAAAGCAGCTTTTGGGTCCTGAAGGCTCTACTCCACTGAGCTACACAAGGAAAAAATGGCAGCTATTCAGCAAAGTCTTTCTACTTCAATCTCTTCATCAGCATCTACTTTTCTGGGTCAGAACAAACTCCGTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAAAATGTGTCAATGCCAGGCAAAACCAGTGGTATTGTCAGATGTGTTGCAACACCCTCTACGGAGAAAACTT.....................................................................................................................................................................................................................................................................................................................................................................................CTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................ATCGCAAGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGGTGACACTACCGAGCCCATTCCTGAAGTCATAACTTCTGCCATGGCAAAG.............................................................................................................................................................................................................................................................................................................................................AGAGCACATGAACTGTCAACATTAAATGGTTACAGTGGTTATGGTGCTGAGCAAGGAGAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTTAGAGCCTCCATTGCTTCTACCTATTATGCAAATGTTGGACTACAAGAAAATGAGATCTTCGTTTCTGATGGTGCCAAAAGTGATATATCTCGACTTCAG.......................................................................................GTTCTTTTTGGATCTAATGTGAGTATGGCTGTGCAAGATCCATCATACCCG............................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGTGGACTCAAGTGTTATTATGGGTCAAACTGGTCAGTTTCAGAAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312191" ref_strand="+" ref_description="SGN-E312191 [cTOA-11-L7]">
      <seq>aaatggcagctattcagcaaagtctttctacttcaatctcttcatcagcatctacttttctgggtcagaacaaactccgtttcaggaatcagaatgtgtcaatgccaggcaaaaccagtggtattgtcagatgtgttgcaacaccctctacggagaaaacttcttacaagacacaggtctcccgcaatgaaaacttagcgaaacttcaagctggttatctgtttcctgagatcgcaagaaggagatctgcacacatgttgaaacatcctgatgctcaaattataagccttggaattggtgacactaccgagcccattcctgaagtcataacttctgccatggcaaagagagcacatgaactgtcaacattaaatggttacaagggttatggtgctgagcaaggagaaaaacaacttagagcctccattgcttctacctattatgcaaatgttggactagaagaaaatgagatcttcgtttctgatggtgccaaaagtgatatatctcgacttcaggttctttttggatctaatgtgagtatggctgtgcaagatccatcatacccggcttatgtggactcgagtgttattatgggtcaaactggtcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4993" stop="1040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4693" g_stop="4609" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4608" i_stop="4002" i_length="607">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4001" g_stop="3925" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="162" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3924" i_stop="3552" i_length="373">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3551" g_stop="3484" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="230" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3483" i_stop="3111" i_length="373">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.210" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3110" g_stop="2994" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="347" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2993" i_stop="2661" i_length="333">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2660" g_stop="2598" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="410" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2597" i_stop="2037" i_length="561">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2036" g_stop="1932" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="515" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="1931" i_stop="1845" i_length="87">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="1844" g_stop="1794" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="566" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="1793" i_stop="1382" i_length="412">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="1381" g_stop="1340" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="608" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E312191" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4693" e_stop="4609"/>
          <exon e_start="4001" e_stop="3925"/>
          <exon e_start="3551" e_stop="3484"/>
          <exon e_start="3110" e_stop="2994"/>
          <exon e_start="2660" e_stop="2598"/>
          <exon e_start="2036" e_stop="1932"/>
          <exon e_start="1844" e_stop="1794"/>
          <exon e_start="1381" e_stop="1340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCAGCTATTCAGCAAAGTCTTTCTACTTCAATCTCTTCATCAGCATCTACTTTTCTGGGTCAGAACAAACTCCGTTTCAGGTACCCAATTTAATAATCTTACATATTTTCTTTCATTTTGTTGATTCAGTTCCAGTTTATTCGTTTATTTTGAATCTTCATCATCTGCGTTAGATATAGATATTGCTTTAAGCATTAGATGAAGCAGTAGAGAAGAAATGTCCAATATGGGTTCAGCATTTTGACTTTGTTATGTATTTTAATGGGAAGAAGGTAATACTGTTCTCATGGGAAAAAGGAGTCCTTTTTTCTTCTGGTTTAATCTTGTACTTGCACTGATTATTGGGTTTTTTATTCTCCCAAATTCAAATGGAAAAAGGTGACCTTTTTGTGGTTTGTACTGATTCTTGAATTTGTTTCTTTATAAATTGTTTAATCTAAAAATATTTGATTCTGTTTTTTTTCTTAGTGTTCTCATTTCGACTAACATGAAGCTAAAGACTCTCCTTTTTTCCATATTAAACAAAGTTTCCTGCATTTACGTTCTAGGATAATTTTAGTAGTTTATGAACTGACGGGAATCTCATCTGGATTGGTAGTATAACAAGATTAACTCAATAAAAAACTATGGTTGCTTCCTTAATTCTTTGCTAATTCTAATGCATAAAGTGTGCATTAATTGTTTCAGGAATCAGAATGTGTCAATGCCAGGCAAAACCAGTGGTATTGTCAGATGTGTTGCAACACCCTCTACGGAGAAAACTTGTAAGCCTTTATTTTAGTGTTGGTTTCCAGTTATATATTGCCAAGTTGAAATGAGAATAGTAGACTTGCGAGCCTGTGCAATGTGGATCAGTTAGAGCCTTTGGCAATTAATGTTGAGAACTTTAAACTAATCAATGTATTGCATATAAATTATTTCAACTTGCTGAAAAAGCAAATTTAAGACTCAAAATGTTTGCTACATGCACGTTTTTGAAATGCAAGAATTGTAAAATTATTGTCTTTCAACAATAACAAAAAGAAAACAACTGTCAGTTTAGGTGAGGTCTTAGTCTCATCTGTATCAGTCCATTCAAATAGCTGTGCATTCTGTTAACATTTGACTGCGCTAACGAAATTTCTGTTTGTCTTGAAGCTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAGGTCTGTATTTCAACTGGTCAATTGTCATTAAGTTGATTGCTGTTTATCTGTATTTTTAAGGTACTTTGCTATAGAAGATGTAGCATTGCTTTTGGGAACATGCAAATAAAATATTGATTTAGATGAAATTGCAGTAATTTGGAATCACGATAAGCCAGTGAGCAAATTTAGTTACCTGAAGCAAAATTATTTGCTTTTTTAGCTGAATTTGGATGACTTATTATGTATCTTTACCTCTCTATGCTTCCATCCTGAAATAGGAGAAATAATTCAATTCTTTATAGTAATACACTCAAAGAGAACTCTTATTTTGTAAACCATCTCTCCTACCTGCATCGAGTTAAGTTCTAAACAATATCTTTGGTGAAGTTAGATCGCAAGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGGTGACACTACCGAGCCCATTCCTGAAGTCATAACTTCTGCCATGGCAAAGGTAATACTGATATCTCTATCATACTATAGTTTTTTGTTATGGGTCAAAACTTCGAAGTTTACTGTATTTTTGTGTCCTATTCTGCCTGACCAATGATGGGATTACTAACAAAAATCATGTAGCTGGTAACACTTGGTTTTATACTAGACATCTGTCTAAATATTTCTGTTGATGAAAAATAAAATATTTCTGTTGATAGATTTCAGCATATGCTTACATAGACTACCATTTAACTTGATAGGTAGTGTGTATTTTTAATCTATTCTGCTTATTGAACTATAAGTCGATAACTTACTTCCTGTTCTTGATTTTGTTTTCTTTGCTCATTTGCAGAGAGCACATGAACTGTCAACATTAAATGGTTACAGTGGTTATGGTGCTGAGCAAGGAGAAAAAGTAAGTAGTGCCCCCTCTCGTCATATTTCAGTAATATGATATTAGCTCTACTATTTATTGTCCAATCCTTGTTTCTCTTCCTTCTTTTGCTACAATAATAATGGTTCTGGCCTTCACTGATAGTTTGTCTTTCCTCGTTTTGTACCAATTTGATTGTTCATTTGTCCTTTTCTTTCCTCAAATACATTGCAATATTCTTTATTCAGGTATCCACTCAATAAAGTTAAAAAACTTCCTCTTCTATTCATAACGTCATTAAGGGATGTGCAGATGTGCAGCTGAAATTTCCATTTCTTGGATCGACAATAATCTATTACTCTTTGCAATTTGCTTTTTATTCAACAAATTCTTGGTTTGCCTACCGAGTAAAGAAAAGAGATGTGAAATGTTTCATGTTTGGTGTTGTCAAGCATCATTATTTTGGATCCGTACTTTAAGATCGTAAGAGAAAATTTGTCTTTGGTCACCATATTTGTTATTCATAGCATTTAATCCGTGATTCAAATGTAAATTCAGCTGTCAGAATAACTCTGAATACATTGATTGTTTCTGCATGAGCAGCAACTTAGAGCCTCCATTGCTTCTACCTATTATGCAAATGTTGGACTAGAAGAAAATGAGATCTTCGTTTCTGATGGTGCCAAAAGTGATATATCTCGACTTCAGGTCTGGTTTACTCTGCATTTAGTGGGCTTTTCAAATTACTGAGCGGTCTTTCACTATCAGTTTATGAATTTCTTCACTGTATTGTAGGTTCTTTTTGGATCTAATGTGAGTATGGCTGTGCAAGATCCATCATACCCGGTAAATGTTTCAGGCTTATACCTCTGTTCTTCTCTATTATAGTATTATGACACAAATGAAAAAGAGTAGTTCGAGGGCAGCCCATGCTCATCCAGGATACCTGAAGATTGTAGATTAGCCATGCCTATTTTGTAATATGATTTTTCACATCATTGTGATATTTAAGTGAAGTGGTGCTACTTAATAACTTAGCACTAATTTTTATACTTTGTAAAAGTTATTGATATGTCTTTTGTTATTATCATTAATTCATTATTGCATCTAATTGCACCTTTTCCTTTTATTTGGTGCAATCTTTTTATTGTCTGTTAGACTACTCCGTGTTTTCTTAATAGGCCTTGGAGAAAGGCTCTCTTATGTGATGGTGTGTGTAAGATTCTGAAATGTGCGTTGATTGTTGTTTCTACTGTAGGCTTATGTGGACTCGAGTGTTATTATGGGTCAAACTGGTCAG</genome_strand>
        <mrna_strand>AAATGGCAGCTATTCAGCAAAGTCTTTCTACTTCAATCTCTTCATCAGCATCTACTTTTCTGGGTCAGAACAAACTCCGTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAGAATGTGTCAATGCCAGGCAAAACCAGTGGTATTGTCAGATGTGTTGCAACACCCTCTACGGAGAAAACTT.....................................................................................................................................................................................................................................................................................................................................................................................CTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................ATCGCAAGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGGTGACACTACCGAGCCCATTCCTGAAGTCATAACTTCTGCCATGGCAAAG.............................................................................................................................................................................................................................................................................................................................................AGAGCACATGAACTGTCAACATTAAATGGTTACAAGGGTTATGGTGCTGAGCAAGGAGAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTTAGAGCCTCCATTGCTTCTACCTATTATGCAAATGTTGGACTAGAAGAAAATGAGATCTTCGTTTCTGATGGTGCCAAAAGTGATATATCTCGACTTCAG.......................................................................................GTTCTTTTTGGATCTAATGTGAGTATGGCTGTGCAAGATCCATCATACCCG............................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATGTGGACTCGAGTGTTATTATGGGTCAAACTGGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396978" ref_strand="+" ref_description="SGN-E396978 [TUS-44-J21](-)">
      <seq>aaaatggcagctattcagcaaagtctttctacttcaatctcttcatcagcatctacttttttgggtcagaacaaactccgtttcaggaatcagaatgtgtcaatgccaggcaaaaccagtggtattgtcagatgtgttgcaacaccctctacggagaaaacttcttacaagacacaggtctcccgcaatgaaaacttagcgaaacttcaagctggttatctgtttcctgagatcgcaagaaggagatctgcacacatgttgaaacatcctgatgctcaaattataagccttggaattggtgacactaccgagcccattcctgaagtcataacttctgccatggcaaagagagcacatgaactgtcaacattaaatggttacagtggttatggtgctgagcaaggagaaaaacaacttagagcctccattgcttctacctattatgcaaatgttggactagaagaaaatgagatcttcgtttctgatggtgccaaaagtgatatatctcgacttcaggttctttttggatctaatgtgagtatggctgtgcaagatccatcatacccggcttatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4994" stop="1487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4694" g_stop="4609" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4608" i_stop="4002" i_length="607">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4001" g_stop="3925" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="163" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3924" i_stop="3552" i_length="373">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3551" g_stop="3484" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="231" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3483" i_stop="3111" i_length="373">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.210" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3110" g_stop="2994" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="348" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2993" i_stop="2661" i_length="333">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2660" g_stop="2598" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="411" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2597" i_stop="2037" i_length="561">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2036" g_stop="1932" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="516" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="1931" i_stop="1845" i_length="87">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="1844" g_stop="1794" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="567" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E396978" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4694" e_stop="4609"/>
          <exon e_start="4001" e_stop="3925"/>
          <exon e_start="3551" e_stop="3484"/>
          <exon e_start="3110" e_stop="2994"/>
          <exon e_start="2660" e_stop="2598"/>
          <exon e_start="2036" e_stop="1932"/>
          <exon e_start="1844" e_stop="1794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAGCTATTCAGCAAAGTCTTTCTACTTCAATCTCTTCATCAGCATCTACTTTTCTGGGTCAGAACAAACTCCGTTTCAGGTACCCAATTTAATAATCTTACATATTTTCTTTCATTTTGTTGATTCAGTTCCAGTTTATTCGTTTATTTTGAATCTTCATCATCTGCGTTAGATATAGATATTGCTTTAAGCATTAGATGAAGCAGTAGAGAAGAAATGTCCAATATGGGTTCAGCATTTTGACTTTGTTATGTATTTTAATGGGAAGAAGGTAATACTGTTCTCATGGGAAAAAGGAGTCCTTTTTTCTTCTGGTTTAATCTTGTACTTGCACTGATTATTGGGTTTTTTATTCTCCCAAATTCAAATGGAAAAAGGTGACCTTTTTGTGGTTTGTACTGATTCTTGAATTTGTTTCTTTATAAATTGTTTAATCTAAAAATATTTGATTCTGTTTTTTTTCTTAGTGTTCTCATTTCGACTAACATGAAGCTAAAGACTCTCCTTTTTTCCATATTAAACAAAGTTTCCTGCATTTACGTTCTAGGATAATTTTAGTAGTTTATGAACTGACGGGAATCTCATCTGGATTGGTAGTATAACAAGATTAACTCAATAAAAAACTATGGTTGCTTCCTTAATTCTTTGCTAATTCTAATGCATAAAGTGTGCATTAATTGTTTCAGGAATCAGAATGTGTCAATGCCAGGCAAAACCAGTGGTATTGTCAGATGTGTTGCAACACCCTCTACGGAGAAAACTTGTAAGCCTTTATTTTAGTGTTGGTTTCCAGTTATATATTGCCAAGTTGAAATGAGAATAGTAGACTTGCGAGCCTGTGCAATGTGGATCAGTTAGAGCCTTTGGCAATTAATGTTGAGAACTTTAAACTAATCAATGTATTGCATATAAATTATTTCAACTTGCTGAAAAAGCAAATTTAAGACTCAAAATGTTTGCTACATGCACGTTTTTGAAATGCAAGAATTGTAAAATTATTGTCTTTCAACAATAACAAAAAGAAAACAACTGTCAGTTTAGGTGAGGTCTTAGTCTCATCTGTATCAGTCCATTCAAATAGCTGTGCATTCTGTTAACATTTGACTGCGCTAACGAAATTTCTGTTTGTCTTGAAGCTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAGGTCTGTATTTCAACTGGTCAATTGTCATTAAGTTGATTGCTGTTTATCTGTATTTTTAAGGTACTTTGCTATAGAAGATGTAGCATTGCTTTTGGGAACATGCAAATAAAATATTGATTTAGATGAAATTGCAGTAATTTGGAATCACGATAAGCCAGTGAGCAAATTTAGTTACCTGAAGCAAAATTATTTGCTTTTTTAGCTGAATTTGGATGACTTATTATGTATCTTTACCTCTCTATGCTTCCATCCTGAAATAGGAGAAATAATTCAATTCTTTATAGTAATACACTCAAAGAGAACTCTTATTTTGTAAACCATCTCTCCTACCTGCATCGAGTTAAGTTCTAAACAATATCTTTGGTGAAGTTAGATCGCAAGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGGTGACACTACCGAGCCCATTCCTGAAGTCATAACTTCTGCCATGGCAAAGGTAATACTGATATCTCTATCATACTATAGTTTTTTGTTATGGGTCAAAACTTCGAAGTTTACTGTATTTTTGTGTCCTATTCTGCCTGACCAATGATGGGATTACTAACAAAAATCATGTAGCTGGTAACACTTGGTTTTATACTAGACATCTGTCTAAATATTTCTGTTGATGAAAAATAAAATATTTCTGTTGATAGATTTCAGCATATGCTTACATAGACTACCATTTAACTTGATAGGTAGTGTGTATTTTTAATCTATTCTGCTTATTGAACTATAAGTCGATAACTTACTTCCTGTTCTTGATTTTGTTTTCTTTGCTCATTTGCAGAGAGCACATGAACTGTCAACATTAAATGGTTACAGTGGTTATGGTGCTGAGCAAGGAGAAAAAGTAAGTAGTGCCCCCTCTCGTCATATTTCAGTAATATGATATTAGCTCTACTATTTATTGTCCAATCCTTGTTTCTCTTCCTTCTTTTGCTACAATAATAATGGTTCTGGCCTTCACTGATAGTTTGTCTTTCCTCGTTTTGTACCAATTTGATTGTTCATTTGTCCTTTTCTTTCCTCAAATACATTGCAATATTCTTTATTCAGGTATCCACTCAATAAAGTTAAAAAACTTCCTCTTCTATTCATAACGTCATTAAGGGATGTGCAGATGTGCAGCTGAAATTTCCATTTCTTGGATCGACAATAATCTATTACTCTTTGCAATTTGCTTTTTATTCAACAAATTCTTGGTTTGCCTACCGAGTAAAGAAAAGAGATGTGAAATGTTTCATGTTTGGTGTTGTCAAGCATCATTATTTTGGATCCGTACTTTAAGATCGTAAGAGAAAATTTGTCTTTGGTCACCATATTTGTTATTCATAGCATTTAATCCGTGATTCAAATGTAAATTCAGCTGTCAGAATAACTCTGAATACATTGATTGTTTCTGCATGAGCAGCAACTTAGAGCCTCCATTGCTTCTACCTATTATGCAAATGTTGGACTAGAAGAAAATGAGATCTTCGTTTCTGATGGTGCCAAAAGTGATATATCTCGACTTCAGGTCTGGTTTACTCTGCATTTAGTGGGCTTTTCAAATTACTGAGCGGTCTTTCACTATCAGTTTATGAATTTCTTCACTGTATTGTAGGTTCTTTTTGGATCTAATGTGAGTATGGCTGTGCAAGATCCATCATACCCG</genome_strand>
        <mrna_strand>AAAATGGCAGCTATTCAGCAAAGTCTTTCTACTTCAATCTCTTCATCAGCATCTACTTTTTTGGGTCAGAACAAACTCCGTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAGAATGTGTCAATGCCAGGCAAAACCAGTGGTATTGTCAGATGTGTTGCAACACCCTCTACGGAGAAAACTT.....................................................................................................................................................................................................................................................................................................................................................................................CTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................ATCGCAAGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGGTGACACTACCGAGCCCATTCCTGAAGTCATAACTTCTGCCATGGCAAAG.............................................................................................................................................................................................................................................................................................................................................AGAGCACATGAACTGTCAACATTAAATGGTTACAGTGGTTATGGTGCTGAGCAAGGAGAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTTAGAGCCTCCATTGCTTCTACCTATTATGCAAATGTTGGACTAGAAGAAAATGAGATCTTCGTTTCTGATGGTGCCAAAAGTGATATATCTCGACTTCAG.......................................................................................GTTCTTTTTGGATCTAATGTGAGTATGGCTGTGCAAGATCCATCATACCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396979" ref_strand="+" ref_description="SGN-E396979 [TUS-44-J21]">
      <seq>aaaatggcagctattcagcaaagtctttctacttcaatctcttcatcagcatctacttttctgggtcagaacaaactccgtttcaggaatcagaatgtgtcaatgccaggcaaaaccagtggtattgtcagatgtgttgcaacaccctctacggagaaaacttcttacaagacacaggtctcccgcaatgaaaacttagcgaaacttcaagctggttatctgtttcctgagatcgcaagaaggagatctgcacacatgttgaaacatcctgatgctcaaattataagccttggaattggtgacactaccgagcccattcctgaagtcataacttctgccatggcaaagagagcacatgaactgtcaacattaaatggttacagtggttatggtgctgagcaaggagaaaaacaacttagagcctccattgcttctacctattatgcaaatgttggactagaagaaaatgagatcttcgtttctgatggtgccaaaagtgatatatctcgacttcaggttctttttggatctaatgtgagtatggctgtgcaagatccatcatacccggcttatgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4994" stop="1486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4694" g_stop="4609" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4608" i_stop="4002" i_length="607">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4001" g_stop="3925" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="163" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3924" i_stop="3552" i_length="373">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3551" g_stop="3484" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="231" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3483" i_stop="3111" i_length="373">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.210" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3110" g_stop="2994" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="348" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2993" i_stop="2661" i_length="333">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2660" g_stop="2598" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="411" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2597" i_stop="2037" i_length="561">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2036" g_stop="1932" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="516" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="1931" i_stop="1845" i_length="87">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="1844" g_stop="1794" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="567" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E396979" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4694" e_stop="4609"/>
          <exon e_start="4001" e_stop="3925"/>
          <exon e_start="3551" e_stop="3484"/>
          <exon e_start="3110" e_stop="2994"/>
          <exon e_start="2660" e_stop="2598"/>
          <exon e_start="2036" e_stop="1932"/>
          <exon e_start="1844" e_stop="1794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAGCTATTCAGCAAAGTCTTTCTACTTCAATCTCTTCATCAGCATCTACTTTTCTGGGTCAGAACAAACTCCGTTTCAGGTACCCAATTTAATAATCTTACATATTTTCTTTCATTTTGTTGATTCAGTTCCAGTTTATTCGTTTATTTTGAATCTTCATCATCTGCGTTAGATATAGATATTGCTTTAAGCATTAGATGAAGCAGTAGAGAAGAAATGTCCAATATGGGTTCAGCATTTTGACTTTGTTATGTATTTTAATGGGAAGAAGGTAATACTGTTCTCATGGGAAAAAGGAGTCCTTTTTTCTTCTGGTTTAATCTTGTACTTGCACTGATTATTGGGTTTTTTATTCTCCCAAATTCAAATGGAAAAAGGTGACCTTTTTGTGGTTTGTACTGATTCTTGAATTTGTTTCTTTATAAATTGTTTAATCTAAAAATATTTGATTCTGTTTTTTTTCTTAGTGTTCTCATTTCGACTAACATGAAGCTAAAGACTCTCCTTTTTTCCATATTAAACAAAGTTTCCTGCATTTACGTTCTAGGATAATTTTAGTAGTTTATGAACTGACGGGAATCTCATCTGGATTGGTAGTATAACAAGATTAACTCAATAAAAAACTATGGTTGCTTCCTTAATTCTTTGCTAATTCTAATGCATAAAGTGTGCATTAATTGTTTCAGGAATCAGAATGTGTCAATGCCAGGCAAAACCAGTGGTATTGTCAGATGTGTTGCAACACCCTCTACGGAGAAAACTTGTAAGCCTTTATTTTAGTGTTGGTTTCCAGTTATATATTGCCAAGTTGAAATGAGAATAGTAGACTTGCGAGCCTGTGCAATGTGGATCAGTTAGAGCCTTTGGCAATTAATGTTGAGAACTTTAAACTAATCAATGTATTGCATATAAATTATTTCAACTTGCTGAAAAAGCAAATTTAAGACTCAAAATGTTTGCTACATGCACGTTTTTGAAATGCAAGAATTGTAAAATTATTGTCTTTCAACAATAACAAAAAGAAAACAACTGTCAGTTTAGGTGAGGTCTTAGTCTCATCTGTATCAGTCCATTCAAATAGCTGTGCATTCTGTTAACATTTGACTGCGCTAACGAAATTTCTGTTTGTCTTGAAGCTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAGGTCTGTATTTCAACTGGTCAATTGTCATTAAGTTGATTGCTGTTTATCTGTATTTTTAAGGTACTTTGCTATAGAAGATGTAGCATTGCTTTTGGGAACATGCAAATAAAATATTGATTTAGATGAAATTGCAGTAATTTGGAATCACGATAAGCCAGTGAGCAAATTTAGTTACCTGAAGCAAAATTATTTGCTTTTTTAGCTGAATTTGGATGACTTATTATGTATCTTTACCTCTCTATGCTTCCATCCTGAAATAGGAGAAATAATTCAATTCTTTATAGTAATACACTCAAAGAGAACTCTTATTTTGTAAACCATCTCTCCTACCTGCATCGAGTTAAGTTCTAAACAATATCTTTGGTGAAGTTAGATCGCAAGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGGTGACACTACCGAGCCCATTCCTGAAGTCATAACTTCTGCCATGGCAAAGGTAATACTGATATCTCTATCATACTATAGTTTTTTGTTATGGGTCAAAACTTCGAAGTTTACTGTATTTTTGTGTCCTATTCTGCCTGACCAATGATGGGATTACTAACAAAAATCATGTAGCTGGTAACACTTGGTTTTATACTAGACATCTGTCTAAATATTTCTGTTGATGAAAAATAAAATATTTCTGTTGATAGATTTCAGCATATGCTTACATAGACTACCATTTAACTTGATAGGTAGTGTGTATTTTTAATCTATTCTGCTTATTGAACTATAAGTCGATAACTTACTTCCTGTTCTTGATTTTGTTTTCTTTGCTCATTTGCAGAGAGCACATGAACTGTCAACATTAAATGGTTACAGTGGTTATGGTGCTGAGCAAGGAGAAAAAGTAAGTAGTGCCCCCTCTCGTCATATTTCAGTAATATGATATTAGCTCTACTATTTATTGTCCAATCCTTGTTTCTCTTCCTTCTTTTGCTACAATAATAATGGTTCTGGCCTTCACTGATAGTTTGTCTTTCCTCGTTTTGTACCAATTTGATTGTTCATTTGTCCTTTTCTTTCCTCAAATACATTGCAATATTCTTTATTCAGGTATCCACTCAATAAAGTTAAAAAACTTCCTCTTCTATTCATAACGTCATTAAGGGATGTGCAGATGTGCAGCTGAAATTTCCATTTCTTGGATCGACAATAATCTATTACTCTTTGCAATTTGCTTTTTATTCAACAAATTCTTGGTTTGCCTACCGAGTAAAGAAAAGAGATGTGAAATGTTTCATGTTTGGTGTTGTCAAGCATCATTATTTTGGATCCGTACTTTAAGATCGTAAGAGAAAATTTGTCTTTGGTCACCATATTTGTTATTCATAGCATTTAATCCGTGATTCAAATGTAAATTCAGCTGTCAGAATAACTCTGAATACATTGATTGTTTCTGCATGAGCAGCAACTTAGAGCCTCCATTGCTTCTACCTATTATGCAAATGTTGGACTAGAAGAAAATGAGATCTTCGTTTCTGATGGTGCCAAAAGTGATATATCTCGACTTCAGGTCTGGTTTACTCTGCATTTAGTGGGCTTTTCAAATTACTGAGCGGTCTTTCACTATCAGTTTATGAATTTCTTCACTGTATTGTAGGTTCTTTTTGGATCTAATGTGAGTATGGCTGTGCAAGATCCATCATACCCG</genome_strand>
        <mrna_strand>AAAATGGCAGCTATTCAGCAAAGTCTTTCTACTTCAATCTCTTCATCAGCATCTACTTTTCTGGGTCAGAACAAACTCCGTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAGAATGTGTCAATGCCAGGCAAAACCAGTGGTATTGTCAGATGTGTTGCAACACCCTCTACGGAGAAAACTT.....................................................................................................................................................................................................................................................................................................................................................................................CTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................ATCGCAAGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGGTGACACTACCGAGCCCATTCCTGAAGTCATAACTTCTGCCATGGCAAAG.............................................................................................................................................................................................................................................................................................................................................AGAGCACATGAACTGTCAACATTAAATGGTTACAGTGGTTATGGTGCTGAGCAAGGAGAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTTAGAGCCTCCATTGCTTCTACCTATTATGCAAATGTTGGACTAGAAGAAAATGAGATCTTCGTTTCTGATGGTGCCAAAAGTGATATATCTCGACTTCAG.......................................................................................GTTCTTTTTGGATCTAATGTGAGTATGGCTGTGCAAGATCCATCATACCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279377" ref_strand="+" ref_description="SGN-E279377 [cLER-11-A19]">
      <seq>aaatggcagctattcagcaaagtctttctacttcaatctcttcatcagcatctacttttctgggtcagaacaaactccgtttcaggaatcagaatgtgtcaatgccaggcaaaaccagtggtattgtcagatgtgttgcaacaccctctacggagaaaacttcttacaagacacaggtctcccgcaatgaaaacttagcgaaacttcaagctggttatctgtttcctgagatcgcaagaaggagatctgcacacatgttgaaacatcctgatgctcaaattataagccttggaattggtgacactaccgagcccattcctgaagtcataacttctgccatggcaaagagagcacatgaactgtcaacattaaatggttacagtggttatggtgctgagcaaggagaaaaacaacttagagcctccattgcttctacctattatgcaaatgttggactagaagaaaatgagatcttcgtttctgatggtgccaaaagtgatatatctcgacttcaggttctttttggatctaatgtgagtatggctgtgcaagatccatcatacccggcttatgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4993" stop="1486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4693" g_stop="4609" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4608" i_stop="4002" i_length="607">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4001" g_stop="3925" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="162" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3924" i_stop="3552" i_length="373">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3551" g_stop="3484" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="230" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3483" i_stop="3111" i_length="373">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.210" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3110" g_stop="2994" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="347" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2993" i_stop="2661" i_length="333">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2660" g_stop="2598" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="410" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2597" i_stop="2037" i_length="561">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2036" g_stop="1932" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="515" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="1931" i_stop="1845" i_length="87">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="1844" g_stop="1794" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="566" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E279377" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4693" e_stop="4609"/>
          <exon e_start="4001" e_stop="3925"/>
          <exon e_start="3551" e_stop="3484"/>
          <exon e_start="3110" e_stop="2994"/>
          <exon e_start="2660" e_stop="2598"/>
          <exon e_start="2036" e_stop="1932"/>
          <exon e_start="1844" e_stop="1794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCAGCTATTCAGCAAAGTCTTTCTACTTCAATCTCTTCATCAGCATCTACTTTTCTGGGTCAGAACAAACTCCGTTTCAGGTACCCAATTTAATAATCTTACATATTTTCTTTCATTTTGTTGATTCAGTTCCAGTTTATTCGTTTATTTTGAATCTTCATCATCTGCGTTAGATATAGATATTGCTTTAAGCATTAGATGAAGCAGTAGAGAAGAAATGTCCAATATGGGTTCAGCATTTTGACTTTGTTATGTATTTTAATGGGAAGAAGGTAATACTGTTCTCATGGGAAAAAGGAGTCCTTTTTTCTTCTGGTTTAATCTTGTACTTGCACTGATTATTGGGTTTTTTATTCTCCCAAATTCAAATGGAAAAAGGTGACCTTTTTGTGGTTTGTACTGATTCTTGAATTTGTTTCTTTATAAATTGTTTAATCTAAAAATATTTGATTCTGTTTTTTTTCTTAGTGTTCTCATTTCGACTAACATGAAGCTAAAGACTCTCCTTTTTTCCATATTAAACAAAGTTTCCTGCATTTACGTTCTAGGATAATTTTAGTAGTTTATGAACTGACGGGAATCTCATCTGGATTGGTAGTATAACAAGATTAACTCAATAAAAAACTATGGTTGCTTCCTTAATTCTTTGCTAATTCTAATGCATAAAGTGTGCATTAATTGTTTCAGGAATCAGAATGTGTCAATGCCAGGCAAAACCAGTGGTATTGTCAGATGTGTTGCAACACCCTCTACGGAGAAAACTTGTAAGCCTTTATTTTAGTGTTGGTTTCCAGTTATATATTGCCAAGTTGAAATGAGAATAGTAGACTTGCGAGCCTGTGCAATGTGGATCAGTTAGAGCCTTTGGCAATTAATGTTGAGAACTTTAAACTAATCAATGTATTGCATATAAATTATTTCAACTTGCTGAAAAAGCAAATTTAAGACTCAAAATGTTTGCTACATGCACGTTTTTGAAATGCAAGAATTGTAAAATTATTGTCTTTCAACAATAACAAAAAGAAAACAACTGTCAGTTTAGGTGAGGTCTTAGTCTCATCTGTATCAGTCCATTCAAATAGCTGTGCATTCTGTTAACATTTGACTGCGCTAACGAAATTTCTGTTTGTCTTGAAGCTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAGGTCTGTATTTCAACTGGTCAATTGTCATTAAGTTGATTGCTGTTTATCTGTATTTTTAAGGTACTTTGCTATAGAAGATGTAGCATTGCTTTTGGGAACATGCAAATAAAATATTGATTTAGATGAAATTGCAGTAATTTGGAATCACGATAAGCCAGTGAGCAAATTTAGTTACCTGAAGCAAAATTATTTGCTTTTTTAGCTGAATTTGGATGACTTATTATGTATCTTTACCTCTCTATGCTTCCATCCTGAAATAGGAGAAATAATTCAATTCTTTATAGTAATACACTCAAAGAGAACTCTTATTTTGTAAACCATCTCTCCTACCTGCATCGAGTTAAGTTCTAAACAATATCTTTGGTGAAGTTAGATCGCAAGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGGTGACACTACCGAGCCCATTCCTGAAGTCATAACTTCTGCCATGGCAAAGGTAATACTGATATCTCTATCATACTATAGTTTTTTGTTATGGGTCAAAACTTCGAAGTTTACTGTATTTTTGTGTCCTATTCTGCCTGACCAATGATGGGATTACTAACAAAAATCATGTAGCTGGTAACACTTGGTTTTATACTAGACATCTGTCTAAATATTTCTGTTGATGAAAAATAAAATATTTCTGTTGATAGATTTCAGCATATGCTTACATAGACTACCATTTAACTTGATAGGTAGTGTGTATTTTTAATCTATTCTGCTTATTGAACTATAAGTCGATAACTTACTTCCTGTTCTTGATTTTGTTTTCTTTGCTCATTTGCAGAGAGCACATGAACTGTCAACATTAAATGGTTACAGTGGTTATGGTGCTGAGCAAGGAGAAAAAGTAAGTAGTGCCCCCTCTCGTCATATTTCAGTAATATGATATTAGCTCTACTATTTATTGTCCAATCCTTGTTTCTCTTCCTTCTTTTGCTACAATAATAATGGTTCTGGCCTTCACTGATAGTTTGTCTTTCCTCGTTTTGTACCAATTTGATTGTTCATTTGTCCTTTTCTTTCCTCAAATACATTGCAATATTCTTTATTCAGGTATCCACTCAATAAAGTTAAAAAACTTCCTCTTCTATTCATAACGTCATTAAGGGATGTGCAGATGTGCAGCTGAAATTTCCATTTCTTGGATCGACAATAATCTATTACTCTTTGCAATTTGCTTTTTATTCAACAAATTCTTGGTTTGCCTACCGAGTAAAGAAAAGAGATGTGAAATGTTTCATGTTTGGTGTTGTCAAGCATCATTATTTTGGATCCGTACTTTAAGATCGTAAGAGAAAATTTGTCTTTGGTCACCATATTTGTTATTCATAGCATTTAATCCGTGATTCAAATGTAAATTCAGCTGTCAGAATAACTCTGAATACATTGATTGTTTCTGCATGAGCAGCAACTTAGAGCCTCCATTGCTTCTACCTATTATGCAAATGTTGGACTAGAAGAAAATGAGATCTTCGTTTCTGATGGTGCCAAAAGTGATATATCTCGACTTCAGGTCTGGTTTACTCTGCATTTAGTGGGCTTTTCAAATTACTGAGCGGTCTTTCACTATCAGTTTATGAATTTCTTCACTGTATTGTAGGTTCTTTTTGGATCTAATGTGAGTATGGCTGTGCAAGATCCATCATACCCG</genome_strand>
        <mrna_strand>AAATGGCAGCTATTCAGCAAAGTCTTTCTACTTCAATCTCTTCATCAGCATCTACTTTTCTGGGTCAGAACAAACTCCGTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAGAATGTGTCAATGCCAGGCAAAACCAGTGGTATTGTCAGATGTGTTGCAACACCCTCTACGGAGAAAACTT.....................................................................................................................................................................................................................................................................................................................................................................................CTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................ATCGCAAGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGGTGACACTACCGAGCCCATTCCTGAAGTCATAACTTCTGCCATGGCAAAG.............................................................................................................................................................................................................................................................................................................................................AGAGCACATGAACTGTCAACATTAAATGGTTACAGTGGTTATGGTGCTGAGCAAGGAGAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTTAGAGCCTCCATTGCTTCTACCTATTATGCAAATGTTGGACTAGAAGAAAATGAGATCTTCGTTTCTGATGGTGCCAAAAGTGATATATCTCGACTTCAG.......................................................................................GTTCTTTTTGGATCTAATGTGAGTATGGCTGTGCAAGATCCATCATACCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327331" ref_strand="+" ref_description="SGN-E327331 [cTOC-19-H8]">
      <seq>ttgcaacaccctctacggagaaaacttcttacaagacacaggtctcccgcaatgaaaacttagcgaaacttcaagctggttatctgtttcctgagatcgcaagaaggagatctgcacacatgttgaaacatcctgatgctcaaattataagccttggaattggtgacactaccgagcccattcctgaagtcataacttctgccatggcaaagagagcacatgaactgtcaacattaaatggttacagtggttatggtgctgagcaaggagaaaaagtaagtagtgccccctctcgtcatatttcagtaatatgatattagctctactatttattgtccaatccttgtttctcttccttcttttgctacaataataatggttctggccttcactgatagtttgtctttcctcgttttgtaccaatttgattgttcatttgtccttttctttcctcaaatacattgcaatattctttattcaggtatccactcaataaagttaaaaaacttcctcttctattcataacgtcattaaaggatgtgcagatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4251" stop="2023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3951" g_stop="3925" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3924" i_stop="3552" i_length="373">
            <donor d_prob="0.795" d_score="0.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3551" g_stop="3484" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="95" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3483" i_stop="3111" i_length="373">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.210" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3110" g_stop="2994" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="212" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2993" i_stop="2661" i_length="333">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2660" g_stop="2323" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="550" r_length="338" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E327331" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3951" e_stop="3925"/>
          <exon e_start="3551" e_stop="3484"/>
          <exon e_start="3110" e_stop="2994"/>
          <exon e_start="2660" e_stop="2323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAACACCCTCTACGGAGAAAACTTGTAAGCCTTTATTTTAGTGTTGGTTTCCAGTTATATATTGCCAAGTTGAAATGAGAATAGTAGACTTGCGAGCCTGTGCAATGTGGATCAGTTAGAGCCTTTGGCAATTAATGTTGAGAACTTTAAACTAATCAATGTATTGCATATAAATTATTTCAACTTGCTGAAAAAGCAAATTTAAGACTCAAAATGTTTGCTACATGCACGTTTTTGAAATGCAAGAATTGTAAAATTATTGTCTTTCAACAATAACAAAAAGAAAACAACTGTCAGTTTAGGTGAGGTCTTAGTCTCATCTGTATCAGTCCATTCAAATAGCTGTGCATTCTGTTAACATTTGACTGCGCTAACGAAATTTCTGTTTGTCTTGAAGCTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAGGTCTGTATTTCAACTGGTCAATTGTCATTAAGTTGATTGCTGTTTATCTGTATTTTTAAGGTACTTTGCTATAGAAGATGTAGCATTGCTTTTGGGAACATGCAAATAAAATATTGATTTAGATGAAATTGCAGTAATTTGGAATCACGATAAGCCAGTGAGCAAATTTAGTTACCTGAAGCAAAATTATTTGCTTTTTTAGCTGAATTTGGATGACTTATTATGTATCTTTACCTCTCTATGCTTCCATCCTGAAATAGGAGAAATAATTCAATTCTTTATAGTAATACACTCAAAGAGAACTCTTATTTTGTAAACCATCTCTCCTACCTGCATCGAGTTAAGTTCTAAACAATATCTTTGGTGAAGTTAGATCGCAAGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGGTGACACTACCGAGCCCATTCCTGAAGTCATAACTTCTGCCATGGCAAAGGTAATACTGATATCTCTATCATACTATAGTTTTTTGTTATGGGTCAAAACTTCGAAGTTTACTGTATTTTTGTGTCCTATTCTGCCTGACCAATGATGGGATTACTAACAAAAATCATGTAGCTGGTAACACTTGGTTTTATACTAGACATCTGTCTAAATATTTCTGTTGATGAAAAATAAAATATTTCTGTTGATAGATTTCAGCATATGCTTACATAGACTACCATTTAACTTGATAGGTAGTGTGTATTTTTAATCTATTCTGCTTATTGAACTATAAGTCGATAACTTACTTCCTGTTCTTGATTTTGTTTTCTTTGCTCATTTGCAGAGAGCACATGAACTGTCAACATTAAATGGTTACAGTGGTTATGGTGCTGAGCAAGGAGAAAAAGTAAGTAGTGCCCCCTCTCGTCATATTTCAGTAATATGATATTAGCTCTACTATTTATTGTCCAATCCTTGTTTCTCTTCCTTCTTTTGCTACAATAATAATGGTTCTGGCCTTCACTGATAGTTTGTCTTTCCTCGTTTTGTACCAATTTGATTGTTCATTTGTCCTTTTCTTTCCTCAAATACATTGCAATATTCTTTATTCAGGTATCCACTCAATAAAGTTAAAAAACTTCCTCTTCTATTCATAACGTCATTAAGGGATGTGCAGATGTG</genome_strand>
        <mrna_strand>TTGCAACACCCTCTACGGAGAAAACTT.....................................................................................................................................................................................................................................................................................................................................................................................CTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................ATCGCAAGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGGTGACACTACCGAGCCCATTCCTGAAGTCATAACTTCTGCCATGGCAAAG.............................................................................................................................................................................................................................................................................................................................................AGAGCACATGAACTGTCAACATTAAATGGTTACAGTGGTTATGGTGCTGAGCAAGGAGAAAAAGTAAGTAGTGCCCCCTCTCGTCATATTTCAGTAATATGATATTAGCTCTACTATTTATTGTCCAATCCTTGTTTCTCTTCCTTCTTTTGCTACAATAATAATGGTTCTGGCCTTCACTGATAGTTTGTCTTTCCTCGTTTTGTACCAATTTGATTGTTCATTTGTCCTTTTCTTTCCTCAAATACATTGCAATATTCTTTATTCAGGTATCCACTCAATAAAGTTAAAAAACTTCCTCTTCTATTCATAACGTCATTAAAGGATGTGCAGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309991" ref_strand="+" ref_description="SGN-E309991 [cTOA-4-A11]">
      <seq>gaagattagggttcttttaaaagcagcttttgggttctgagggctctactccactgagctacacaaggaaaaaatggcagctattcagcaaagtctttctacttcaatctcttcatcagcatctacttttctgggtcagaacaaactccgtttcaggaatcagaatgtgtcaatgccaggcaaaaccagtggtattgacagatgtgttgcaacaccctctacggagaaaacttcttacaagacacaggtctcccgcaatgaaaacttagcgaaacttcaagctggttatctgtttcctgagatcgcacgaaggagatctgcacacatgttgaaacatcctgatgctcaaattataagccttggaattggtgacactaccgagcccattcctgaagtcataacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5064" stop="2707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4764" g_stop="4609" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4608" i_stop="4002" i_length="607">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4001" g_stop="3925" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="233" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3924" i_stop="3552" i_length="373">
            <donor d_prob="0.795" d_score="0.98"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3551" g_stop="3484" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="301" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3483" i_stop="3111" i_length="373">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.210" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3110" g_stop="3007" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="405" r_length="104" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E309991" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4764" e_stop="4609"/>
          <exon e_start="4001" e_stop="3925"/>
          <exon e_start="3551" e_stop="3484"/>
          <exon e_start="3110" e_stop="3007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTAGGGTTCTTTTAAAAGCAGCTTTTGGGTTCTGAGGGCTCTACTCCACTGAGCTACACAAGGAAAAAATGGCAGCTATTCAGCAAAGTCTTTCTACTTCAATCTCTTCATCAGCATCTACTTTTCTGGGTCAGAACAAACTCCGTTTCAGGTACCCAATTTAATAATCTTACATATTTTCTTTCATTTTGTTGATTCAGTTCCAGTTTATTCGTTTATTTTGAATCTTCATCATCTGCGTTAGATATAGATATTGCTTTAAGCATTAGATGAAGCAGTAGAGAAGAAATGTCCAATATGGGTTCAGCATTTTGACTTTGTTATGTATTTTAATGGGAAGAAGGTAATACTGTTCTCATGGGAAAAAGGAGTCCTTTTTTCTTCTGGTTTAATCTTGTACTTGCACTGATTATTGGGTTTTTTATTCTCCCAAATTCAAATGGAAAAAGGTGACCTTTTTGTGGTTTGTACTGATTCTTGAATTTGTTTCTTTATAAATTGTTTAATCTAAAAATATTTGATTCTGTTTTTTTTCTTAGTGTTCTCATTTCGACTAACATGAAGCTAAAGACTCTCCTTTTTTCCATATTAAACAAAGTTTCCTGCATTTACGTTCTAGGATAATTTTAGTAGTTTATGAACTGACGGGAATCTCATCTGGATTGGTAGTATAACAAGATTAACTCAATAAAAAACTATGGTTGCTTCCTTAATTCTTTGCTAATTCTAATGCATAAAGTGTGCATTAATTGTTTCAGGAATCAGAATGTGTCAATGCCAGGCAAAACCAGTGGTATTGTCAGATGTGTTGCAACACCCTCTACGGAGAAAACTTGTAAGCCTTTATTTTAGTGTTGGTTTCCAGTTATATATTGCCAAGTTGAAATGAGAATAGTAGACTTGCGAGCCTGTGCAATGTGGATCAGTTAGAGCCTTTGGCAATTAATGTTGAGAACTTTAAACTAATCAATGTATTGCATATAAATTATTTCAACTTGCTGAAAAAGCAAATTTAAGACTCAAAATGTTTGCTACATGCACGTTTTTGAAATGCAAGAATTGTAAAATTATTGTCTTTCAACAATAACAAAAAGAAAACAACTGTCAGTTTAGGTGAGGTCTTAGTCTCATCTGTATCAGTCCATTCAAATAGCTGTGCATTCTGTTAACATTTGACTGCGCTAACGAAATTTCTGTTTGTCTTGAAGCTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAGGTCTGTATTTCAACTGGTCAATTGTCATTAAGTTGATTGCTGTTTATCTGTATTTTTAAGGTACTTTGCTATAGAAGATGTAGCATTGCTTTTGGGAACATGCAAATAAAATATTGATTTAGATGAAATTGCAGTAATTTGGAATCACGATAAGCCAGTGAGCAAATTTAGTTACCTGAAGCAAAATTATTTGCTTTTTTAGCTGAATTTGGATGACTTATTATGTATCTTTACCTCTCTATGCTTCCATCCTGAAATAGGAGAAATAATTCAATTCTTTATAGTAATACACTCAAAGAGAACTCTTATTTTGTAAACCATCTCTCCTACCTGCATCGAGTTAAGTTCTAAACAATATCTTTGGTGAAGTTAGATCGCAAGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGGTGACACTACCGAGCCCATTCCTGAAGTCATAACTTC</genome_strand>
        <mrna_strand>GAAGATTAGGGTTCTTTTAAAAGCAGCTTTTGGGTTCTGAGGGCTCTACTCCACTGAGCTACACAAGGAAAAAATGGCAGCTATTCAGCAAAGTCTTTCTACTTCAATCTCTTCATCAGCATCTACTTTTCTGGGTCAGAACAAACTCCGTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAGAATGTGTCAATGCCAGGCAAAACCAGTGGTATTGACAGATGTGTTGCAACACCCTCTACGGAGAAAACTT.....................................................................................................................................................................................................................................................................................................................................................................................CTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................ATCGCACGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGGTGACACTACCGAGCCCATTCCTGAAGTCATAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311588" ref_strand="+" ref_description="SGN-E311588 [cTOA-6-O15]">
      <seq>gaagattagggttcttttaaaagcagcttttgggttctgagggctctactccactgagctacacaaggaaaaaatggcagctattcagcaaagtctttctacttcaatctcttcatcagcatctacttttctgggtcagaacaaactccgtttcaggaatcagaatgtgtcaatgccaggcaaaaccagtggtattgtcagatgtgttgcaacaccctctacggagaaaacttcttacaagacacaggtctcccgcaatgaaaacttagcgaaacttcaagctggttatctgtttcctgagatcgcaagaaggagatctgcacacatgttgaaacatcctgatgctcaaattataagccttggaattgggacactaccgagcccattcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5064" stop="2720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4764" g_stop="4609" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4608" i_stop="4002" i_length="607">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4001" g_stop="3925" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="233" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3924" i_stop="3552" i_length="373">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3551" g_stop="3484" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="301" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3483" i_stop="3111" i_length="373">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.210" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3110" g_stop="3020" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="391" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E311588" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4764" e_stop="4609"/>
          <exon e_start="4001" e_stop="3925"/>
          <exon e_start="3551" e_stop="3484"/>
          <exon e_start="3110" e_stop="3020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTAGGGTTCTTTTAAAAGCAGCTTTTGGGTTCTGAGGGCTCTACTCCACTGAGCTACACAAGGAAAAAATGGCAGCTATTCAGCAAAGTCTTTCTACTTCAATCTCTTCATCAGCATCTACTTTTCTGGGTCAGAACAAACTCCGTTTCAGGTACCCAATTTAATAATCTTACATATTTTCTTTCATTTTGTTGATTCAGTTCCAGTTTATTCGTTTATTTTGAATCTTCATCATCTGCGTTAGATATAGATATTGCTTTAAGCATTAGATGAAGCAGTAGAGAAGAAATGTCCAATATGGGTTCAGCATTTTGACTTTGTTATGTATTTTAATGGGAAGAAGGTAATACTGTTCTCATGGGAAAAAGGAGTCCTTTTTTCTTCTGGTTTAATCTTGTACTTGCACTGATTATTGGGTTTTTTATTCTCCCAAATTCAAATGGAAAAAGGTGACCTTTTTGTGGTTTGTACTGATTCTTGAATTTGTTTCTTTATAAATTGTTTAATCTAAAAATATTTGATTCTGTTTTTTTTCTTAGTGTTCTCATTTCGACTAACATGAAGCTAAAGACTCTCCTTTTTTCCATATTAAACAAAGTTTCCTGCATTTACGTTCTAGGATAATTTTAGTAGTTTATGAACTGACGGGAATCTCATCTGGATTGGTAGTATAACAAGATTAACTCAATAAAAAACTATGGTTGCTTCCTTAATTCTTTGCTAATTCTAATGCATAAAGTGTGCATTAATTGTTTCAGGAATCAGAATGTGTCAATGCCAGGCAAAACCAGTGGTATTGTCAGATGTGTTGCAACACCCTCTACGGAGAAAACTTGTAAGCCTTTATTTTAGTGTTGGTTTCCAGTTATATATTGCCAAGTTGAAATGAGAATAGTAGACTTGCGAGCCTGTGCAATGTGGATCAGTTAGAGCCTTTGGCAATTAATGTTGAGAACTTTAAACTAATCAATGTATTGCATATAAATTATTTCAACTTGCTGAAAAAGCAAATTTAAGACTCAAAATGTTTGCTACATGCACGTTTTTGAAATGCAAGAATTGTAAAATTATTGTCTTTCAACAATAACAAAAAGAAAACAACTGTCAGTTTAGGTGAGGTCTTAGTCTCATCTGTATCAGTCCATTCAAATAGCTGTGCATTCTGTTAACATTTGACTGCGCTAACGAAATTTCTGTTTGTCTTGAAGCTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAGGTCTGTATTTCAACTGGTCAATTGTCATTAAGTTGATTGCTGTTTATCTGTATTTTTAAGGTACTTTGCTATAGAAGATGTAGCATTGCTTTTGGGAACATGCAAATAAAATATTGATTTAGATGAAATTGCAGTAATTTGGAATCACGATAAGCCAGTGAGCAAATTTAGTTACCTGAAGCAAAATTATTTGCTTTTTTAGCTGAATTTGGATGACTTATTATGTATCTTTACCTCTCTATGCTTCCATCCTGAAATAGGAGAAATAATTCAATTCTTTATAGTAATACACTCAAAGAGAACTCTTATTTTGTAAACCATCTCTCCTACCTGCATCGAGTTAAGTTCTAAACAATATCTTTGGTGAAGTTAGATCGCAAGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGGTGACACTACCGAGCCCATTCCTG</genome_strand>
        <mrna_strand>GAAGATTAGGGTTCTTTTAAAAGCAGCTTTTGGGTTCTGAGGGCTCTACTCCACTGAGCTACACAAGGAAAAAATGGCAGCTATTCAGCAAAGTCTTTCTACTTCAATCTCTTCATCAGCATCTACTTTTCTGGGTCAGAACAAACTCCGTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAGAATGTGTCAATGCCAGGCAAAACCAGTGGTATTGTCAGATGTGTTGCAACACCCTCTACGGAGAAAACTT.....................................................................................................................................................................................................................................................................................................................................................................................CTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................ATCGCAAGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGG-GACACTACCGAGCCCATTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277807" ref_strand="-" ref_description="SGN-E277807 [cLEL-5-M11](-)">
      <seq>gcacgagggaagattagggttcttttaaaagcagcttttgggttctgagggctctactccactgagctacacaaggaaaaaatggcagctattcagcaaagtctttctacttcaatctcttcatcagcatctacttttctgggtcagaacaaactccgtttcaggaatcagaatgtgtcaatgccaggcaaaaccagtggtattgtcagatgtgttgcaacaccctctacggagaaaacttcttacaagacacaggtctcccgcaatgaaaacttagcgaaacttaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5071" stop="3202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4769" g_stop="4609" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="164" r_length="160" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4608" i_stop="4002" i_length="607">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4001" g_stop="3925" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="241" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3924" i_stop="3552" i_length="373">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3551" g_stop="3502" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="290" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E277807" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277807" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4769" e_stop="4609"/>
          <exon e_start="4001" e_stop="3925"/>
          <exon e_start="3551" e_stop="3502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGGAAGATTAGGGTTCTTTTAAAAGCAGCTTTTGGGTTCTGAGGGCTCTACTCCACTGAGCTACACAAGGAAAAAATGGCAGCTATTCAGCAAAGTCTTTCTACTTCAATCTCTTCATCAGCATCTACTTTTCTGGGTCAGAACAAACTCCGTTTCAGGTACCCAATTTAATAATCTTACATATTTTCTTTCATTTTGTTGATTCAGTTCCAGTTTATTCGTTTATTTTGAATCTTCATCATCTGCGTTAGATATAGATATTGCTTTAAGCATTAGATGAAGCAGTAGAGAAGAAATGTCCAATATGGGTTCAGCATTTTGACTTTGTTATGTATTTTAATGGGAAGAAGGTAATACTGTTCTCATGGGAAAAAGGAGTCCTTTTTTCTTCTGGTTTAATCTTGTACTTGCACTGATTATTGGGTTTTTTATTCTCCCAAATTCAAATGGAAAAAGGTGACCTTTTTGTGGTTTGTACTGATTCTTGAATTTGTTTCTTTATAAATTGTTTAATCTAAAAATATTTGATTCTGTTTTTTTTCTTAGTGTTCTCATTTCGACTAACATGAAGCTAAAGACTCTCCTTTTTTCCATATTAAACAAAGTTTCCTGCATTTACGTTCTAGGATAATTTTAGTAGTTTATGAACTGACGGGAATCTCATCTGGATTGGTAGTATAACAAGATTAACTCAATAAAAAACTATGGTTGCTTCCTTAATTCTTTGCTAATTCTAATGCATAAAGTGTGCATTAATTGTTTCAGGAATCAGAATGTGTCAATGCCAGGCAAAACCAGTGGTATTGTCAGATGTGTTGCAACACCCTCTACGGAGAAAACTTGTAAGCCTTTATTTTAGTGTTGGTTTCCAGTTATATATTGCCAAGTTGAAATGAGAATAGTAGACTTGCGAGCCTGTGCAATGTGGATCAGTTAGAGCCTTTGGCAATTAATGTTGAGAACTTTAAACTAATCAATGTATTGCATATAAATTATTTCAACTTGCTGAAAAAGCAAATTTAAGACTCAAAATGTTTGCTACATGCACGTTTTTGAAATGCAAGAATTGTAAAATTATTGTCTTTCAACAATAACAAAAAGAAAACAACTGTCAGTTTAGGTGAGGTCTTAGTCTCATCTGTATCAGTCCATTCAAATAGCTGTGCATTCTGTTAACATTTGACTGCGCTAACGAAATTTCTGTTTGTCTTGAAGCTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCT</genome_strand>
        <mrna_strand>GAG-GGAAGATTAGGGTTCTTTTAAAAGCAGCTTTTGGGTTCTGAGGGCTCTACTCCACTGAGCTACACAAGGAAAAAATGGCAGCTATTCAGCAAAGTCTTTCTACTTCAATCTCTTCATCAGCATCTACTTTTCTGGGTCAGAACAAACTCCGTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAGAATGTGTCAATGCCAGGCAAAACCAGTGGTATTGTCAGATGTGTTGCAACACCCTCTACGGAGAAAACTT.....................................................................................................................................................................................................................................................................................................................................................................................CTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTT-AAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244258" ref_strand="+" ref_description="SGN-E244258 [cLEF-37-A3]">
      <seq>gagagatcaggcgaaattctaaggaaaattgatttgaaaaattcgacatggatcttaatccacctgcaggggaggactatgcacacccacagatatgttttttccatgtgctcttcaaggcagcagcattagcgttttatattctgtcagctttatttgttgatagttttgttatcatctttgtggtaactgttcttttagctgctcttgacttttgggtggttaagaacgtcagtggacgtattcttgtgggtttaaggtggtggaatgaaatagatgacaatggcgagagtgtgtggagatttgagtgccttgatcaagagtcaatggctcgcatgaacaagaaggattcctggctgttttggtggactttgtacctaacagctgttgcttggttctttctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5762" stop="9195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6062" g_stop="6123" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6124" i_stop="8028" i_length="1905">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8029" g_stop="8085" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="119" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8086" i_stop="8168" i_length="83">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8169" g_stop="8372" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="323" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8373" i_stop="8515" i_length="143">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.748" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8516" g_stop="8575" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="383" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8576" i_stop="8873" i_length="298">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8874" g_stop="8895" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="405" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E244258" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6062" e_stop="6123"/>
          <exon e_start="8029" e_stop="8085"/>
          <exon e_start="8169" e_stop="8372"/>
          <exon e_start="8516" e_stop="8575"/>
          <exon e_start="8874" e_stop="8895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGATCAGGCGAAATCCTAAGGAAAATTGATTTGAAAAATTCGACATGGATCTTAATCCAGTAAGCGTCGTAGTTTTCCTTATTTGATTCATTTTTTCACCTAATGCTGTAAATTGATACTTTGAAATCTCACAATTGTTTTTTTTTTGTGTGGGAATGAGTTGCATTGATGTTAGGGTTTTGTTTGAGCTCGTAATTATTTTATTTGATCTGTTGATTTGCTCTTTTGTTTGGATTTTCGTGTTTCCATTACTTTTCTACTGCATATCATGTGTTACGGATCTGTCTTTGGGAATTGAAAATTTCTGCTTTAGTGAATTGTATTACCCGGTAGGTGAATAATTTGTTTTAGTTGGATGAATTGTTACTGCAAATCTAGGTGAAATAATGGAGTTAGTAGGAAGTGTTGATGTGCTAGGCTCAAGGATATTATGGTGTCATAGTCACAATTTGATGAGTTTAGTATGGGACGAGTAGTCGAGTACTCCCTCATGTTGATCCCCTTGTTTACCAAGCAAGATCGAAATGATTGGGCATAAAGTGTCTGTAGATGGTGTCTTAAGTTTTGTCATTGATTGCTTATTTAATATAGTTGTATCTCTTTTTGAGAGACGACATAGTATTCCTGCTTTGTTCTATTCTCAAATCAATGTGAGCATTGCACGGATTTCACATCCAGACAAAGGAGGGAAAGTGCGGTTGGTTTATGTCTAGCGTAAAAGAAATATCTTCTAAATGTTGAGATCCTAATTTGCTTCAAGGAACAAATTCTTTTACTTGGACTGGACCTAAGTATTGTAAAATGGATGTAGAGGACTTTTTAGCCAATCATTTTAGCTTGGGAATGGAGCTTGGTGATTGTTTTGTATTACATAGTTTCTTGTGTGTATATATTGATGCAACTCTGAAATTTAAACTTCTAAATGTGTTATTTAATTTAATTACCTATATTTATTTATTTTAAAATGTGCTATTAATTTTGGATGACAGGTAAGTCCCACTGTCCCTCTATATCATGTCAGTTTCATGATCGGTGTGGTTAAGTTTTAGGTTAGTTTAGTAAAAGGTACGAATAGCAGTCTAGCACACTTACCTTGGAGGATAGAATCACATGGATGAAAGTTGTTTCAAAAGACTTATAAATTCTCAAAATCTACCTGCACTTTAGAGAGAAAATGACGGAAGTAAAGATCCATATAGAAGATACTGGCTAGTTGGAATTATAATCTATGTTGCTCGTACTCTTCAAAATGTCGACAGGTGTGTGTCAGGTCCTCCAAAAGTAGTGGTTTTTTTGGAGTATTCGACACGGGTGGGGCAACATATTTGGAGAGTCTGGGCAACATAGATTAAAACTTATTTATATTGGCATGCTTACATTAGCTTAAACATTATAGTAGTTTTTCTTACCCCTTTTTTCCTTGTTTAGATATTCGTATGTTAGTAGAAAATCTAGAGAACTCTAGCGGTAGATAATCCCAAACTATTGAAGATTGGAATGAAACTGGTCAGAATGTGGCGAAATAGATCTATAGTGCCAATATCAACTAGCATGGGATTGAGTGATAGTTGTTTTGTTATTGTTGTAATCTTTAAGTTCGTTCCTTTTAGATCAATCATCTGGATAAAACGGTGATATATGATCTAGGATAAGCAATGCAGGTAAAATAGGATTTTTTATCGGATGTCCCCGAAGGTAATTTTCTTTTTTAAAAAATAAAAATGGTTAACCTTTTACATAATACTCTTTAGCTTAGAGGAGTTTGTGGCCTTCCAGTTATCTTACTTTTCTCTGTTACTTATTGTAGATGATCTTCCCTTCTTATTTTCTCTCTTTTACTACCCTTGCTGCTCCTTTCTCCTTGCACCCCTAAACGCTCTCCGCTGCAAGGAAAGGAGGGAGCACATAGAATTTGTTGACTGATTCTATCATAAAGTTAATTAAGCTGTCACATTCTTTCTCAGCCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAGGTCTAGCTTATTACATATGCTTTTTATTTTAATGTCTTAGGTTGTAATTGCTTTCATTTAATACATTTTCTTTGCATTGACAGGCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAGGTGAGAAATCTTGTTTCAGGTTCCTTAGCATACATCTTTACCTTCAGACATTCGTTTATTTTTGAAGTGCTTGCCCATTTAGTCATTTTAATAATTACCTTTGTTGCCTTGGACAAACCTTTTTCCTTCACTTCTCCTTTCAGTCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACAGTAAGTGAAGACTCTATCACACTGGCTGCTTATTCTAATGTTCAATATAACAAACTGAGCACATGTATTGTACAATCAGAAAACAAGAAAAATCGGCAACAGGCACAAAATATATGTGGATAAGAACAATGGCCCTTCACACCTTGGCTTCTCGATTTTTTTTTCAGTTTTTACTTTTTCAAGATTCAGGCTTCAAATATATTCTAGAACTTCTTTTCTTTCTATCTGTACCTTATTTTTGCAAAGTGAAATAGTTAGTTGTTGATGTGTTGCACCTGATCCGTGTACTTTGTTGTAGGCTGTTGCTTGGTTCTTTCTCG</genome_strand>
        <mrna_strand>GAGAGATCAGGCGAAATTCTAAGGAAAATTGATTTGAAAAATTCGACATGGATCTTAATCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAG...................................................................................GCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAG...............................................................................................................................................TCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACA..........................................................................................................................................................................................................................................................................................................GCTGTTGCTTGGTTCTTTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275355" ref_strand="+" ref_description="SGN-E275355 [cLEN-10-K23]">
      <seq>gagatcaggcgaaatcctaaggaaaattgatttgaaaaattcgacatggatcttaatccacctgcaggggaggactatgcacacccacagatatgttttttccatgtgctcttcaaggcagcagcattagcgttttatattctgtcagctttatttgttgatagttttgttatcatctttgtggtaactgttcttttagctgctcttgacttttgggtggttaagaacgtcagtggacgtattcttgtgggtttaaggtggtggaatgaaatagatgacaatggcgagagtgtgtggagatttgagtgccttgatcaagaagtcaatgggctcgcatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5764" stop="8676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6064" g_stop="6123" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6124" i_stop="8028" i_length="1905">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8029" g_stop="8085" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="117" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8086" i_stop="8168" i_length="83">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8169" g_stop="8372" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="322" r_length="205" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8373" i_stop="8515" i_length="143">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.748" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8516" g_stop="8533" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="341" r_length="19" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E275355" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6064" e_stop="6123"/>
          <exon e_start="8029" e_stop="8085"/>
          <exon e_start="8169" e_stop="8372"/>
          <exon e_start="8516" e_stop="8533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATCAGGCGAAATCCTAAGGAAAATTGATTTGAAAAATTCGACATGGATCTTAATCCAGTAAGCGTCGTAGTTTTCCTTATTTGATTCATTTTTTCACCTAATGCTGTAAATTGATACTTTGAAATCTCACAATTGTTTTTTTTTTGTGTGGGAATGAGTTGCATTGATGTTAGGGTTTTGTTTGAGCTCGTAATTATTTTATTTGATCTGTTGATTTGCTCTTTTGTTTGGATTTTCGTGTTTCCATTACTTTTCTACTGCATATCATGTGTTACGGATCTGTCTTTGGGAATTGAAAATTTCTGCTTTAGTGAATTGTATTACCCGGTAGGTGAATAATTTGTTTTAGTTGGATGAATTGTTACTGCAAATCTAGGTGAAATAATGGAGTTAGTAGGAAGTGTTGATGTGCTAGGCTCAAGGATATTATGGTGTCATAGTCACAATTTGATGAGTTTAGTATGGGACGAGTAGTCGAGTACTCCCTCATGTTGATCCCCTTGTTTACCAAGCAAGATCGAAATGATTGGGCATAAAGTGTCTGTAGATGGTGTCTTAAGTTTTGTCATTGATTGCTTATTTAATATAGTTGTATCTCTTTTTGAGAGACGACATAGTATTCCTGCTTTGTTCTATTCTCAAATCAATGTGAGCATTGCACGGATTTCACATCCAGACAAAGGAGGGAAAGTGCGGTTGGTTTATGTCTAGCGTAAAAGAAATATCTTCTAAATGTTGAGATCCTAATTTGCTTCAAGGAACAAATTCTTTTACTTGGACTGGACCTAAGTATTGTAAAATGGATGTAGAGGACTTTTTAGCCAATCATTTTAGCTTGGGAATGGAGCTTGGTGATTGTTTTGTATTACATAGTTTCTTGTGTGTATATATTGATGCAACTCTGAAATTTAAACTTCTAAATGTGTTATTTAATTTAATTACCTATATTTATTTATTTTAAAATGTGCTATTAATTTTGGATGACAGGTAAGTCCCACTGTCCCTCTATATCATGTCAGTTTCATGATCGGTGTGGTTAAGTTTTAGGTTAGTTTAGTAAAAGGTACGAATAGCAGTCTAGCACACTTACCTTGGAGGATAGAATCACATGGATGAAAGTTGTTTCAAAAGACTTATAAATTCTCAAAATCTACCTGCACTTTAGAGAGAAAATGACGGAAGTAAAGATCCATATAGAAGATACTGGCTAGTTGGAATTATAATCTATGTTGCTCGTACTCTTCAAAATGTCGACAGGTGTGTGTCAGGTCCTCCAAAAGTAGTGGTTTTTTTGGAGTATTCGACACGGGTGGGGCAACATATTTGGAGAGTCTGGGCAACATAGATTAAAACTTATTTATATTGGCATGCTTACATTAGCTTAAACATTATAGTAGTTTTTCTTACCCCTTTTTTCCTTGTTTAGATATTCGTATGTTAGTAGAAAATCTAGAGAACTCTAGCGGTAGATAATCCCAAACTATTGAAGATTGGAATGAAACTGGTCAGAATGTGGCGAAATAGATCTATAGTGCCAATATCAACTAGCATGGGATTGAGTGATAGTTGTTTTGTTATTGTTGTAATCTTTAAGTTCGTTCCTTTTAGATCAATCATCTGGATAAAACGGTGATATATGATCTAGGATAAGCAATGCAGGTAAAATAGGATTTTTTATCGGATGTCCCCGAAGGTAATTTTCTTTTTTAAAAAATAAAAATGGTTAACCTTTTACATAATACTCTTTAGCTTAGAGGAGTTTGTGGCCTTCCAGTTATCTTACTTTTCTCTGTTACTTATTGTAGATGATCTTCCCTTCTTATTTTCTCTCTTTTACTACCCTTGCTGCTCCTTTCTCCTTGCACCCCTAAACGCTCTCCGCTGCAAGGAAAGGAGGGAGCACATAGAATTTGTTGACTGATTCTATCATAAAGTTAATTAAGCTGTCACATTCTTTCTCAGCCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAGGTCTAGCTTATTACATATGCTTTTTATTTTAATGTCTTAGGTTGTAATTGCTTTCATTTAATACATTTTCTTTGCATTGACAGGCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAG-AGGTGAGAAATCTTGTTTCAGGTTCCTTAGCATACATCTTTACCTTCAGACATTCGTTTATTTTTGAAGTGCTTGCCCATTTAGTCATTTTAATAATTACCTTTGTTGCCTTGGACAAACCTTTTTCCTTCACTTCTCCTTTCAGTCAAT-GGCTCGCATGAAC</genome_strand>
        <mrna_strand>GAGATCAGGCGAAATCCTAAGGAAAATTGATTTGAAAAATTCGACATGGATCTTAATCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAG...................................................................................GCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAAG...............................................................................................................................................TCAATGGGCTCGCATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713491" ref_strand="+" ref_description="SGN-E713491 [FB08DB06]">
      <seq>cgatcaggcgaaatcctaaggaaaattgatttgaaaaattcgacatggatcttaatccacctgcaggggaggactatgcacacccacagatatgttttttccatgtgctcttcaaggcagcagcattagcgttttatattctgtcagctttatttgttgatagttttgttatcatctttgtggtaactgttcttttagctgctcttgacttttgggtggttaagaacgtcagtggacgtattcttgtgggtttaaggtggtggaatgaaatagatgacaatggcgagagtgtgtggagatttgagtgccttgatcaagagtcaatggctcgcatgaacaagaaggattcctggctgttttggtggactttgtacctaacagctgttgcttggttctttctcgcgatattctccctcattaggttccaagctgattatcttctcgttgttggagtttgcttgactctcagcgtcgcaaatattgttggttttactagatgccgcaaagatgctaagaagcagcttcaagcatttgcaacccagaccctcacttctcggttctcctctactctacagtcggcatttagtgttgtttgaacaattaatacagaacaagctactcgtgagaggaaactggtcgtcagtgtccacctctacgaacaatcatgtattgattatataatggtggtttgtatacgctgtgaaattatgatggcacatatcggaaggatgcttaggagattttgacatggtgttaatttggacctctccttttatgaggtcttgtacatgcagaacatgaacgaactgggaaaacgtttttgttcctttcagttttcatgaaatccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5766" stop="9982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6065" g_stop="6123" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6124" i_stop="8028" i_length="1905">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8029" g_stop="8085" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="116" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8086" i_stop="8168" i_length="83">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8169" g_stop="8372" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="320" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8373" i_stop="8515" i_length="143">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.748" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8516" g_stop="8575" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="380" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8576" i_stop="8873" i_length="298">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8874" g_stop="9000" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="507" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9001" i_stop="9341" i_length="341">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9342" g_stop="9676" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="842" r_length="335" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="848" polyA_stop="866"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E713491" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6065" e_stop="6123"/>
          <exon e_start="8029" e_stop="8085"/>
          <exon e_start="8169" e_stop="8372"/>
          <exon e_start="8516" e_stop="8575"/>
          <exon e_start="8874" e_stop="9000"/>
          <exon e_start="9342" e_stop="9676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCAGGCGAAATCCTAAGGAAAATTGATTTGAAAAATTCGACATGGATCTTAATCCAGTAAGCGTCGTAGTTTTCCTTATTTGATTCATTTTTTCACCTAATGCTGTAAATTGATACTTTGAAATCTCACAATTGTTTTTTTTTTGTGTGGGAATGAGTTGCATTGATGTTAGGGTTTTGTTTGAGCTCGTAATTATTTTATTTGATCTGTTGATTTGCTCTTTTGTTTGGATTTTCGTGTTTCCATTACTTTTCTACTGCATATCATGTGTTACGGATCTGTCTTTGGGAATTGAAAATTTCTGCTTTAGTGAATTGTATTACCCGGTAGGTGAATAATTTGTTTTAGTTGGATGAATTGTTACTGCAAATCTAGGTGAAATAATGGAGTTAGTAGGAAGTGTTGATGTGCTAGGCTCAAGGATATTATGGTGTCATAGTCACAATTTGATGAGTTTAGTATGGGACGAGTAGTCGAGTACTCCCTCATGTTGATCCCCTTGTTTACCAAGCAAGATCGAAATGATTGGGCATAAAGTGTCTGTAGATGGTGTCTTAAGTTTTGTCATTGATTGCTTATTTAATATAGTTGTATCTCTTTTTGAGAGACGACATAGTATTCCTGCTTTGTTCTATTCTCAAATCAATGTGAGCATTGCACGGATTTCACATCCAGACAAAGGAGGGAAAGTGCGGTTGGTTTATGTCTAGCGTAAAAGAAATATCTTCTAAATGTTGAGATCCTAATTTGCTTCAAGGAACAAATTCTTTTACTTGGACTGGACCTAAGTATTGTAAAATGGATGTAGAGGACTTTTTAGCCAATCATTTTAGCTTGGGAATGGAGCTTGGTGATTGTTTTGTATTACATAGTTTCTTGTGTGTATATATTGATGCAACTCTGAAATTTAAACTTCTAAATGTGTTATTTAATTTAATTACCTATATTTATTTATTTTAAAATGTGCTATTAATTTTGGATGACAGGTAAGTCCCACTGTCCCTCTATATCATGTCAGTTTCATGATCGGTGTGGTTAAGTTTTAGGTTAGTTTAGTAAAAGGTACGAATAGCAGTCTAGCACACTTACCTTGGAGGATAGAATCACATGGATGAAAGTTGTTTCAAAAGACTTATAAATTCTCAAAATCTACCTGCACTTTAGAGAGAAAATGACGGAAGTAAAGATCCATATAGAAGATACTGGCTAGTTGGAATTATAATCTATGTTGCTCGTACTCTTCAAAATGTCGACAGGTGTGTGTCAGGTCCTCCAAAAGTAGTGGTTTTTTTGGAGTATTCGACACGGGTGGGGCAACATATTTGGAGAGTCTGGGCAACATAGATTAAAACTTATTTATATTGGCATGCTTACATTAGCTTAAACATTATAGTAGTTTTTCTTACCCCTTTTTTCCTTGTTTAGATATTCGTATGTTAGTAGAAAATCTAGAGAACTCTAGCGGTAGATAATCCCAAACTATTGAAGATTGGAATGAAACTGGTCAGAATGTGGCGAAATAGATCTATAGTGCCAATATCAACTAGCATGGGATTGAGTGATAGTTGTTTTGTTATTGTTGTAATCTTTAAGTTCGTTCCTTTTAGATCAATCATCTGGATAAAACGGTGATATATGATCTAGGATAAGCAATGCAGGTAAAATAGGATTTTTTATCGGATGTCCCCGAAGGTAATTTTCTTTTTTAAAAAATAAAAATGGTTAACCTTTTACATAATACTCTTTAGCTTAGAGGAGTTTGTGGCCTTCCAGTTATCTTACTTTTCTCTGTTACTTATTGTAGATGATCTTCCCTTCTTATTTTCTCTCTTTTACTACCCTTGCTGCTCCTTTCTCCTTGCACCCCTAAACGCTCTCCGCTGCAAGGAAAGGAGGGAGCACATAGAATTTGTTGACTGATTCTATCATAAAGTTAATTAAGCTGTCACATTCTTTCTCAGCCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAGGTCTAGCTTATTACATATGCTTTTTATTTTAATGTCTTAGGTTGTAATTGCTTTCATTTAATACATTTTCTTTGCATTGACAGGCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAGGTGAGAAATCTTGTTTCAGGTTCCTTAGCATACATCTTTACCTTCAGACATTCGTTTATTTTTGAAGTGCTTGCCCATTTAGTCATTTTAATAATTACCTTTGTTGCCTTGGACAAACCTTTTTCCTTCACTTCTCCTTTCAGTCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACAGTAAGTGAAGACTCTATCACACTGGCTGCTTATTCTAATGTTCAATATAACAAACTGAGCACATGTATTGTACAATCAGAAAACAAGAAAAATCGGCAACAGGCACAAAATATATGTGGATAAGAACAATGGCCCTTCACACCTTGGCTTCTCGATTTTTTTTTCAGTTTTTACTTTTTCAAGATTCAGGCTTCAAATATATTCTAGAACTTCTTTTCTTTCTATCTGTACCTTATTTTTGCAAAGTGAAATAGTTAGTTGTTGATGTGTTGCACCTGATCCGTGTACTTTGTTGTAGGCTGTTGCTTGGTTCTTTCTCGCGATATTCTCCCTCATTAGGTTCCAAGCTGATTATCTTCTCGTTGTTGGAGTTTGCTTGACTCTCAGCGTCGCAAATATTGTTGGTTTTACTAGATGCCGCAAAGGTGTGTACTTACTTTAACTTCTATGGATTCTGCCTCTAACAATATCTTTACCTCTGGAGTTTTACTTTGTTTGGGTGCTCCAGTTTTCATGCATGAGCATAATATGTATGATGATAGATGTTGTCAGGTTCCCTCATTAGTTTGTGTATTCTCTTATTCGCTTCTGTTATGTATATATGTATGTATGTTGTTGCTTCTGTCTTGCTCTGCTTGTTTCAGTTCTCATTTTTGTGTTTGGTAGTCATGATCAGATCTCTGTGTACTATTCTCTTTTGAATTCTGCTTTCCAGTACGCCCTTACTGTTTAATATTCATATATTTTTCTTCTTTCTAATATCCAGATGCTAAGAAGCAGCTTCAAGCATTTGCAACCCAGACCCTCACTTCTCGGTTCTCCTCTACTCTACAGTCGGCATTTAGTGTTGTTTGAACAATTAATACAGAACAAGCTACTCGTGAGAGGAAACTGGTCGTCAGTGTCCACCTCTACGAACAATCATGTATTGATTATATAATGGTGGTTTGTATACGCTGTGAAATTATGATGGCACATATCGGAAGGATGCTTAGGAGATTTTGACATGGTGTTAATTTGGACCTCTCCTTTATTGAGGTCTTGTACATGCAGAACATGAACGAACTGGGAAAACGTTTTTGTTCCTTTCAGTTTTCATGA</genome_strand>
        <mrna_strand>CGATCAGGCGAAATCCTAAGGAAAATTGATTTGAAAAATTCGACATGGATCTTAATCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAG...................................................................................GCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAG...............................................................................................................................................TCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACA..........................................................................................................................................................................................................................................................................................................GCTGTTGCTTGGTTCTTTCTCGCGATATTCTCCCTCATTAGGTTCCAAGCTGATTATCTTCTCGTTGTTGGAGTTTGCTTGACTCTCAGCGTCGCAAATATTGTTGGTTTTACTAGATGCCGCAAAG.....................................................................................................................................................................................................................................................................................................................................................ATGCTAAGAAGCAGCTTCAAGCATTTGCAACCCAGACCCTCACTTCTCGGTTCTCCTCTACTCTACAGTCGGCATTTAGTGTTGTTTGAACAATTAATACAGAACAAGCTACTCGTGAGAGGAAACTGGTCGTCAGTGTCCACCTCTACGAACAATCATGTATTGATTATATAATGGTGGTTTGTATACGCTGTGAAATTATGATGGCACATATCGGAAGGATGCTTAGGAGATTTTGACATGGTGTTAATTTGGACCTCTCCTTTTATGAGGTCTTGTACATGCAGAACATGAACGAACTGGGAAAACGTTTTTGTTCCTTTCAGTTTTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717154" ref_strand="+" ref_description="SGN-E717154 [FB19BB04]">
      <seq>gatcaggcgaaatcctaaggaaaattgatttgaaaaattcgacatggatcttaatccacctgcaggggaggactatgcacacccacagatatgttttttccatgtgctcttcaaggcagcagcattagcgttttatattctgtcagctttatttgttgatagttttgttatcatctttgtggtaactgttcttttagctgctcttgacttttgggtggttaagaacgtcagtggacgtattcttgtgggtttaaggtggtggaatgaaatagatgacaatggcgagagtgtgtggagatttgagtgccttgatcaagagtcaatggctcgcatgaacaagaaggattcctggctgttttggtggactttgtacctaacagctgttgcttggttctttctcgcgatattctccctcattaggttccaagctgattatcttctcgttgttggagtttgcttgactctcagcgtcgcaaatattgttggttttactagatgccgcaaagatgctaagaagcagcttcaagcatttgcaacccagaccctcacttctcggttctcctctactctacagtcggcatttagtgttgtttgaacaattaatacagaacaagctactcgtgagaggaaactggtcgtcagtgtccacctctacgaacaatcatgtattgattatataatggtggtttgtatacgctgtgaaattatgatggcacatatcggaaggatgcttangagattttgacatggtgttaatttggacctctcctttattgangtcttgtacatgcagaacatgaacgaactgggaaaaacgttttgttcctttcagttttcatgaatccaattgcttcattgtatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5766" stop="9999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6066" g_stop="6123" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6124" i_stop="8028" i_length="1905">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8029" g_stop="8085" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="115" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8086" i_stop="8168" i_length="83">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8169" g_stop="8372" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="319" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8373" i_stop="8515" i_length="143">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.748" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8516" g_stop="8575" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="379" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8576" i_stop="8873" i_length="298">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8874" g_stop="9000" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="506" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9001" i_stop="9341" i_length="341">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9342" g_stop="9699" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="864" r_length="358" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E717154" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6066" e_stop="6123"/>
          <exon e_start="8029" e_stop="8085"/>
          <exon e_start="8169" e_stop="8372"/>
          <exon e_start="8516" e_stop="8575"/>
          <exon e_start="8874" e_stop="9000"/>
          <exon e_start="9342" e_stop="9699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAGGCGAAATCCTAAGGAAAATTGATTTGAAAAATTCGACATGGATCTTAATCCAGTAAGCGTCGTAGTTTTCCTTATTTGATTCATTTTTTCACCTAATGCTGTAAATTGATACTTTGAAATCTCACAATTGTTTTTTTTTTGTGTGGGAATGAGTTGCATTGATGTTAGGGTTTTGTTTGAGCTCGTAATTATTTTATTTGATCTGTTGATTTGCTCTTTTGTTTGGATTTTCGTGTTTCCATTACTTTTCTACTGCATATCATGTGTTACGGATCTGTCTTTGGGAATTGAAAATTTCTGCTTTAGTGAATTGTATTACCCGGTAGGTGAATAATTTGTTTTAGTTGGATGAATTGTTACTGCAAATCTAGGTGAAATAATGGAGTTAGTAGGAAGTGTTGATGTGCTAGGCTCAAGGATATTATGGTGTCATAGTCACAATTTGATGAGTTTAGTATGGGACGAGTAGTCGAGTACTCCCTCATGTTGATCCCCTTGTTTACCAAGCAAGATCGAAATGATTGGGCATAAAGTGTCTGTAGATGGTGTCTTAAGTTTTGTCATTGATTGCTTATTTAATATAGTTGTATCTCTTTTTGAGAGACGACATAGTATTCCTGCTTTGTTCTATTCTCAAATCAATGTGAGCATTGCACGGATTTCACATCCAGACAAAGGAGGGAAAGTGCGGTTGGTTTATGTCTAGCGTAAAAGAAATATCTTCTAAATGTTGAGATCCTAATTTGCTTCAAGGAACAAATTCTTTTACTTGGACTGGACCTAAGTATTGTAAAATGGATGTAGAGGACTTTTTAGCCAATCATTTTAGCTTGGGAATGGAGCTTGGTGATTGTTTTGTATTACATAGTTTCTTGTGTGTATATATTGATGCAACTCTGAAATTTAAACTTCTAAATGTGTTATTTAATTTAATTACCTATATTTATTTATTTTAAAATGTGCTATTAATTTTGGATGACAGGTAAGTCCCACTGTCCCTCTATATCATGTCAGTTTCATGATCGGTGTGGTTAAGTTTTAGGTTAGTTTAGTAAAAGGTACGAATAGCAGTCTAGCACACTTACCTTGGAGGATAGAATCACATGGATGAAAGTTGTTTCAAAAGACTTATAAATTCTCAAAATCTACCTGCACTTTAGAGAGAAAATGACGGAAGTAAAGATCCATATAGAAGATACTGGCTAGTTGGAATTATAATCTATGTTGCTCGTACTCTTCAAAATGTCGACAGGTGTGTGTCAGGTCCTCCAAAAGTAGTGGTTTTTTTGGAGTATTCGACACGGGTGGGGCAACATATTTGGAGAGTCTGGGCAACATAGATTAAAACTTATTTATATTGGCATGCTTACATTAGCTTAAACATTATAGTAGTTTTTCTTACCCCTTTTTTCCTTGTTTAGATATTCGTATGTTAGTAGAAAATCTAGAGAACTCTAGCGGTAGATAATCCCAAACTATTGAAGATTGGAATGAAACTGGTCAGAATGTGGCGAAATAGATCTATAGTGCCAATATCAACTAGCATGGGATTGAGTGATAGTTGTTTTGTTATTGTTGTAATCTTTAAGTTCGTTCCTTTTAGATCAATCATCTGGATAAAACGGTGATATATGATCTAGGATAAGCAATGCAGGTAAAATAGGATTTTTTATCGGATGTCCCCGAAGGTAATTTTCTTTTTTAAAAAATAAAAATGGTTAACCTTTTACATAATACTCTTTAGCTTAGAGGAGTTTGTGGCCTTCCAGTTATCTTACTTTTCTCTGTTACTTATTGTAGATGATCTTCCCTTCTTATTTTCTCTCTTTTACTACCCTTGCTGCTCCTTTCTCCTTGCACCCCTAAACGCTCTCCGCTGCAAGGAAAGGAGGGAGCACATAGAATTTGTTGACTGATTCTATCATAAAGTTAATTAAGCTGTCACATTCTTTCTCAGCCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAGGTCTAGCTTATTACATATGCTTTTTATTTTAATGTCTTAGGTTGTAATTGCTTTCATTTAATACATTTTCTTTGCATTGACAGGCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAGGTGAGAAATCTTGTTTCAGGTTCCTTAGCATACATCTTTACCTTCAGACATTCGTTTATTTTTGAAGTGCTTGCCCATTTAGTCATTTTAATAATTACCTTTGTTGCCTTGGACAAACCTTTTTCCTTCACTTCTCCTTTCAGTCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACAGTAAGTGAAGACTCTATCACACTGGCTGCTTATTCTAATGTTCAATATAACAAACTGAGCACATGTATTGTACAATCAGAAAACAAGAAAAATCGGCAACAGGCACAAAATATATGTGGATAAGAACAATGGCCCTTCACACCTTGGCTTCTCGATTTTTTTTTCAGTTTTTACTTTTTCAAGATTCAGGCTTCAAATATATTCTAGAACTTCTTTTCTTTCTATCTGTACCTTATTTTTGCAAAGTGAAATAGTTAGTTGTTGATGTGTTGCACCTGATCCGTGTACTTTGTTGTAGGCTGTTGCTTGGTTCTTTCTCGCGATATTCTCCCTCATTAGGTTCCAAGCTGATTATCTTCTCGTTGTTGGAGTTTGCTTGACTCTCAGCGTCGCAAATATTGTTGGTTTTACTAGATGCCGCAAAGGTGTGTACTTACTTTAACTTCTATGGATTCTGCCTCTAACAATATCTTTACCTCTGGAGTTTTACTTTGTTTGGGTGCTCCAGTTTTCATGCATGAGCATAATATGTATGATGATAGATGTTGTCAGGTTCCCTCATTAGTTTGTGTATTCTCTTATTCGCTTCTGTTATGTATATATGTATGTATGTTGTTGCTTCTGTCTTGCTCTGCTTGTTTCAGTTCTCATTTTTGTGTTTGGTAGTCATGATCAGATCTCTGTGTACTATTCTCTTTTGAATTCTGCTTTCCAGTACGCCCTTACTGTTTAATATTCATATATTTTTCTTCTTTCTAATATCCAGATGCTAAGAAGCAGCTTCAAGCATTTGCAACCCAGACCCTCACTTCTCGGTTCTCCTCTACTCTACAGTCGGCATTTAGTGTTGTTTGAACAATTAATACAGAACAAGCTACTCGTGAGAGGAAACTGGTCGTCAGTGTCCACCTCTACGAACAATCATGTATTGATTATATAATGGTGGTTTGTATACGCTGTGAAATTATGATGGCACATATCGGAAGGATGCTTAGGAGATTTTGACATGGTGTTAATTTGGACCTCTCCTTTATTGAGGTCTTGTACATGCAGAACATGAACGAACTGGGAAAACGTTTTTGTTCCTTTCAGTTTTCATGAATCCAATTGCTTCATTGTATTTT</genome_strand>
        <mrna_strand>GATCAGGCGAAATCCTAAGGAAAATTGATTTGAAAAATTCGACATGGATCTTAATCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAG...................................................................................GCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAG...............................................................................................................................................TCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACA..........................................................................................................................................................................................................................................................................................................GCTGTTGCTTGGTTCTTTCTCGCGATATTCTCCCTCATTAGGTTCCAAGCTGATTATCTTCTCGTTGTTGGAGTTTGCTTGACTCTCAGCGTCGCAAATATTGTTGGTTTTACTAGATGCCGCAAAG.....................................................................................................................................................................................................................................................................................................................................................ATGCTAAGAAGCAGCTTCAAGCATTTGCAACCCAGACCCTCACTTCTCGGTTCTCCTCTACTCTACAGTCGGCATTTAGTGTTGTTTGAACAATTAATACAGAACAAGCTACTCGTGAGAGGAAACTGGTCGTCAGTGTCCACCTCTACGAACAATCATGTATTGATTATATAATGGTGGTTTGTATACGCTGTGAAATTATGATGGCACATATCGGAAGGATGCTTANGAGATTTTGACATGGTGTTAATTTGGACCTCTCCTTTATTGANGTCTTGTACATGCAGAACATGAACGAACTGGGAAAAACGTTTTGTTCCTTTCAGTTTTCATGAATCCAATTGCTTCATTGTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335634" ref_strand="+" ref_description="SGN-E335634 [cTOE-8-O12]">
      <seq>ggcgaaatcctaaggaaaattgatttgaaaaattcgacatggatcttaatccacctgcaggggaggactatgcacacccacagatatgttttttccatgtgctcttcaaggcagcagcattagcgttttatattctgtcagctttatttgttgatagttttgttatcatctttgtggtaactgttcttttagctgctcttgacttttgggtggttaagaacgtcagtggacgtattcttgtgggtttaaggtggtggaatgaaatagatgacaatggcgagagtgtgtggagatttgagtgccttgatcaagagtcaatggctcgcatgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5771" stop="8834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6071" g_stop="6123" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6124" i_stop="8028" i_length="1905">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8029" g_stop="8085" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="110" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8086" i_stop="8168" i_length="83">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8169" g_stop="8372" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="314" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8373" i_stop="8515" i_length="143">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.748" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8516" g_stop="8534" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="333" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E335634" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6071" e_stop="6123"/>
          <exon e_start="8029" e_stop="8085"/>
          <exon e_start="8169" e_stop="8372"/>
          <exon e_start="8516" e_stop="8534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGAAATCCTAAGGAAAATTGATTTGAAAAATTCGACATGGATCTTAATCCAGTAAGCGTCGTAGTTTTCCTTATTTGATTCATTTTTTCACCTAATGCTGTAAATTGATACTTTGAAATCTCACAATTGTTTTTTTTTTGTGTGGGAATGAGTTGCATTGATGTTAGGGTTTTGTTTGAGCTCGTAATTATTTTATTTGATCTGTTGATTTGCTCTTTTGTTTGGATTTTCGTGTTTCCATTACTTTTCTACTGCATATCATGTGTTACGGATCTGTCTTTGGGAATTGAAAATTTCTGCTTTAGTGAATTGTATTACCCGGTAGGTGAATAATTTGTTTTAGTTGGATGAATTGTTACTGCAAATCTAGGTGAAATAATGGAGTTAGTAGGAAGTGTTGATGTGCTAGGCTCAAGGATATTATGGTGTCATAGTCACAATTTGATGAGTTTAGTATGGGACGAGTAGTCGAGTACTCCCTCATGTTGATCCCCTTGTTTACCAAGCAAGATCGAAATGATTGGGCATAAAGTGTCTGTAGATGGTGTCTTAAGTTTTGTCATTGATTGCTTATTTAATATAGTTGTATCTCTTTTTGAGAGACGACATAGTATTCCTGCTTTGTTCTATTCTCAAATCAATGTGAGCATTGCACGGATTTCACATCCAGACAAAGGAGGGAAAGTGCGGTTGGTTTATGTCTAGCGTAAAAGAAATATCTTCTAAATGTTGAGATCCTAATTTGCTTCAAGGAACAAATTCTTTTACTTGGACTGGACCTAAGTATTGTAAAATGGATGTAGAGGACTTTTTAGCCAATCATTTTAGCTTGGGAATGGAGCTTGGTGATTGTTTTGTATTACATAGTTTCTTGTGTGTATATATTGATGCAACTCTGAAATTTAAACTTCTAAATGTGTTATTTAATTTAATTACCTATATTTATTTATTTTAAAATGTGCTATTAATTTTGGATGACAGGTAAGTCCCACTGTCCCTCTATATCATGTCAGTTTCATGATCGGTGTGGTTAAGTTTTAGGTTAGTTTAGTAAAAGGTACGAATAGCAGTCTAGCACACTTACCTTGGAGGATAGAATCACATGGATGAAAGTTGTTTCAAAAGACTTATAAATTCTCAAAATCTACCTGCACTTTAGAGAGAAAATGACGGAAGTAAAGATCCATATAGAAGATACTGGCTAGTTGGAATTATAATCTATGTTGCTCGTACTCTTCAAAATGTCGACAGGTGTGTGTCAGGTCCTCCAAAAGTAGTGGTTTTTTTGGAGTATTCGACACGGGTGGGGCAACATATTTGGAGAGTCTGGGCAACATAGATTAAAACTTATTTATATTGGCATGCTTACATTAGCTTAAACATTATAGTAGTTTTTCTTACCCCTTTTTTCCTTGTTTAGATATTCGTATGTTAGTAGAAAATCTAGAGAACTCTAGCGGTAGATAATCCCAAACTATTGAAGATTGGAATGAAACTGGTCAGAATGTGGCGAAATAGATCTATAGTGCCAATATCAACTAGCATGGGATTGAGTGATAGTTGTTTTGTTATTGTTGTAATCTTTAAGTTCGTTCCTTTTAGATCAATCATCTGGATAAAACGGTGATATATGATCTAGGATAAGCAATGCAGGTAAAATAGGATTTTTTATCGGATGTCCCCGAAGGTAATTTTCTTTTTTAAAAAATAAAAATGGTTAACCTTTTACATAATACTCTTTAGCTTAGAGGAGTTTGTGGCCTTCCAGTTATCTTACTTTTCTCTGTTACTTATTGTAGATGATCTTCCCTTCTTATTTTCTCTCTTTTACTACCCTTGCTGCTCCTTTCTCCTTGCACCCCTAAACGCTCTCCGCTGCAAGGAAAGGAGGGAGCACATAGAATTTGTTGACTGATTCTATCATAAAGTTAATTAAGCTGTCACATTCTTTCTCAGCCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAGGTCTAGCTTATTACATATGCTTTTTATTTTAATGTCTTAGGTTGTAATTGCTTTCATTTAATACATTTTCTTTGCATTGACAGGCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAGGTGAGAAATCTTGTTTCAGGTTCCTTAGCATACATCTTTACCTTCAGACATTCGTTTATTTTTGAAGTGCTTGCCCATTTAGTCATTTTAATAATTACCTTTGTTGCCTTGGACAAACCTTTTTCCTTCACTTCTCCTTTCAGTCAATGGCTCGCATGAACA</genome_strand>
        <mrna_strand>GGCGAAATCCTAAGGAAAATTGATTTGAAAAATTCGACATGGATCTTAATCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAG...................................................................................GCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAG...............................................................................................................................................TCAATGGCTCGCATGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326322" ref_strand="+" ref_description="SGN-E326322 [cTOC-14-M20]">
      <seq>gaaatcctaaggaaaattgatttgaaaaattcgacatggatcttaatccacctgcaggggaggactatgcacacccacagatatgttttttccatgtgctcttcaaggcagcagcattagcgttttatattctgtcagctttatttgttgatagttttgttatcatctttgtggtaactgttcttttagctgctcttgacttttgggtggttaagaacgtcagtggacgtattcttgtgggtttaaggtggtggaatgaaatagatgacaatggcgagagtgtgtggagatttgagtgccttgatcaagagtcaatggctcgcatgaacaagaaggattcctggctgttttggtggactttgtacctaacagctgttgcttggttctttctcgcgatattctccctcattaggttccaagctgattatcttctcgttgttggagtttgcttgactctcagcgtcgcaaatattgttggttttactagatgccgcaaagatgctaagaagcagcttcaagcatttgcaacccagaccctcacttctcggttctcctctactctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5774" stop="9707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6074" g_stop="6123" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6124" i_stop="8028" i_length="1905">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8029" g_stop="8085" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="107" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8086" i_stop="8168" i_length="83">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8169" g_stop="8372" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="311" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8373" i_stop="8515" i_length="143">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.748" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8516" g_stop="8575" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="371" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8576" i_stop="8873" i_length="298">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8874" g_stop="9000" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="498" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9001" i_stop="9341" i_length="341">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9342" g_stop="9407" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="564" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E326322" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6074" e_stop="6123"/>
          <exon e_start="8029" e_stop="8085"/>
          <exon e_start="8169" e_stop="8372"/>
          <exon e_start="8516" e_stop="8575"/>
          <exon e_start="8874" e_stop="9000"/>
          <exon e_start="9342" e_stop="9407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCCTAAGGAAAATTGATTTGAAAAATTCGACATGGATCTTAATCCAGTAAGCGTCGTAGTTTTCCTTATTTGATTCATTTTTTCACCTAATGCTGTAAATTGATACTTTGAAATCTCACAATTGTTTTTTTTTTGTGTGGGAATGAGTTGCATTGATGTTAGGGTTTTGTTTGAGCTCGTAATTATTTTATTTGATCTGTTGATTTGCTCTTTTGTTTGGATTTTCGTGTTTCCATTACTTTTCTACTGCATATCATGTGTTACGGATCTGTCTTTGGGAATTGAAAATTTCTGCTTTAGTGAATTGTATTACCCGGTAGGTGAATAATTTGTTTTAGTTGGATGAATTGTTACTGCAAATCTAGGTGAAATAATGGAGTTAGTAGGAAGTGTTGATGTGCTAGGCTCAAGGATATTATGGTGTCATAGTCACAATTTGATGAGTTTAGTATGGGACGAGTAGTCGAGTACTCCCTCATGTTGATCCCCTTGTTTACCAAGCAAGATCGAAATGATTGGGCATAAAGTGTCTGTAGATGGTGTCTTAAGTTTTGTCATTGATTGCTTATTTAATATAGTTGTATCTCTTTTTGAGAGACGACATAGTATTCCTGCTTTGTTCTATTCTCAAATCAATGTGAGCATTGCACGGATTTCACATCCAGACAAAGGAGGGAAAGTGCGGTTGGTTTATGTCTAGCGTAAAAGAAATATCTTCTAAATGTTGAGATCCTAATTTGCTTCAAGGAACAAATTCTTTTACTTGGACTGGACCTAAGTATTGTAAAATGGATGTAGAGGACTTTTTAGCCAATCATTTTAGCTTGGGAATGGAGCTTGGTGATTGTTTTGTATTACATAGTTTCTTGTGTGTATATATTGATGCAACTCTGAAATTTAAACTTCTAAATGTGTTATTTAATTTAATTACCTATATTTATTTATTTTAAAATGTGCTATTAATTTTGGATGACAGGTAAGTCCCACTGTCCCTCTATATCATGTCAGTTTCATGATCGGTGTGGTTAAGTTTTAGGTTAGTTTAGTAAAAGGTACGAATAGCAGTCTAGCACACTTACCTTGGAGGATAGAATCACATGGATGAAAGTTGTTTCAAAAGACTTATAAATTCTCAAAATCTACCTGCACTTTAGAGAGAAAATGACGGAAGTAAAGATCCATATAGAAGATACTGGCTAGTTGGAATTATAATCTATGTTGCTCGTACTCTTCAAAATGTCGACAGGTGTGTGTCAGGTCCTCCAAAAGTAGTGGTTTTTTTGGAGTATTCGACACGGGTGGGGCAACATATTTGGAGAGTCTGGGCAACATAGATTAAAACTTATTTATATTGGCATGCTTACATTAGCTTAAACATTATAGTAGTTTTTCTTACCCCTTTTTTCCTTGTTTAGATATTCGTATGTTAGTAGAAAATCTAGAGAACTCTAGCGGTAGATAATCCCAAACTATTGAAGATTGGAATGAAACTGGTCAGAATGTGGCGAAATAGATCTATAGTGCCAATATCAACTAGCATGGGATTGAGTGATAGTTGTTTTGTTATTGTTGTAATCTTTAAGTTCGTTCCTTTTAGATCAATCATCTGGATAAAACGGTGATATATGATCTAGGATAAGCAATGCAGGTAAAATAGGATTTTTTATCGGATGTCCCCGAAGGTAATTTTCTTTTTTAAAAAATAAAAATGGTTAACCTTTTACATAATACTCTTTAGCTTAGAGGAGTTTGTGGCCTTCCAGTTATCTTACTTTTCTCTGTTACTTATTGTAGATGATCTTCCCTTCTTATTTTCTCTCTTTTACTACCCTTGCTGCTCCTTTCTCCTTGCACCCCTAAACGCTCTCCGCTGCAAGGAAAGGAGGGAGCACATAGAATTTGTTGACTGATTCTATCATAAAGTTAATTAAGCTGTCACATTCTTTCTCAGCCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAGGTCTAGCTTATTACATATGCTTTTTATTTTAATGTCTTAGGTTGTAATTGCTTTCATTTAATACATTTTCTTTGCATTGACAGGCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAGGTGAGAAATCTTGTTTCAGGTTCCTTAGCATACATCTTTACCTTCAGACATTCGTTTATTTTTGAAGTGCTTGCCCATTTAGTCATTTTAATAATTACCTTTGTTGCCTTGGACAAACCTTTTTCCTTCACTTCTCCTTTCAGTCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACAGTAAGTGAAGACTCTATCACACTGGCTGCTTATTCTAATGTTCAATATAACAAACTGAGCACATGTATTGTACAATCAGAAAACAAGAAAAATCGGCAACAGGCACAAAATATATGTGGATAAGAACAATGGCCCTTCACACCTTGGCTTCTCGATTTTTTTTTCAGTTTTTACTTTTTCAAGATTCAGGCTTCAAATATATTCTAGAACTTCTTTTCTTTCTATCTGTACCTTATTTTTGCAAAGTGAAATAGTTAGTTGTTGATGTGTTGCACCTGATCCGTGTACTTTGTTGTAGGCTGTTGCTTGGTTCTTTCTCGCGATATTCTCCCTCATTAGGTTCCAAGCTGATTATCTTCTCGTTGTTGGAGTTTGCTTGACTCTCAGCGTCGCAAATATTGTTGGTTTTACTAGATGCCGCAAAGGTGTGTACTTACTTTAACTTCTATGGATTCTGCCTCTAACAATATCTTTACCTCTGGAGTTTTACTTTGTTTGGGTGCTCCAGTTTTCATGCATGAGCATAATATGTATGATGATAGATGTTGTCAGGTTCCCTCATTAGTTTGTGTATTCTCTTATTCGCTTCTGTTATGTATATATGTATGTATGTTGTTGCTTCTGTCTTGCTCTGCTTGTTTCAGTTCTCATTTTTGTGTTTGGTAGTCATGATCAGATCTCTGTGTACTATTCTCTTTTGAATTCTGCTTTCCAGTACGCCCTTACTGTTTAATATTCATATATTTTTCTTCTTTCTAATATCCAGATGCTAAGAAGCAGCTTCAAGCATTTGCAACCCAGACCCTCACTTCTCGGTTCTCCTCTACTCTAC</genome_strand>
        <mrna_strand>GAAATCCTAAGGAAAATTGATTTGAAAAATTCGACATGGATCTTAATCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAG...................................................................................GCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAG...............................................................................................................................................TCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACA..........................................................................................................................................................................................................................................................................................................GCTGTTGCTTGGTTCTTTCTCGCGATATTCTCCCTCATTAGGTTCCAAGCTGATTATCTTCTCGTTGTTGGAGTTTGCTTGACTCTCAGCGTCGCAAATATTGTTGGTTTTACTAGATGCCGCAAAG.....................................................................................................................................................................................................................................................................................................................................................ATGCTAAGAAGCAGCTTCAAGCATTTGCAACCCAGACCCTCACTTCTCGGTTCTCCTCTACTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375804" ref_strand="+" ref_description="SGN-E375804 [TUS-15-I6]">
      <seq>ctaaggaaaattgatttgaaaaattcgacatggatcttaatccacctgcaggggaggactatgcacacccacagatatgttttttccatgtgctcttcaaggcagcagcattagcgttttatattctgtcagctttatttgttgatagttttgttatcatctttgtggtaactgttcttttagctgctcttgacttttgggtggttaagaacgtcagtggacgtattcttgtgggtttaaggtggtggaatgaaatagatgacaatggcgagagtgtgtggagatttgagtgccttgatcaagagtcaatggctcgcatgaacaagaaggattcctggctgttttggtggactttgtacctaacagctgttgcttggttctttctcgcgatattctccctcattaggttccaagctgattatcttctcgttgttggagtttgcttgactctcagcgtcgcaaatattgttggttttactagatgccgcaaagatgctaagaagcagcttcaagcatttgcaacccagaccctcacttctcggttctcctctactctacagtcggcatttagtgttggttgaacaattaatacagaacaagctactcgtgagaggaaactggtcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5780" stop="9775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6080" g_stop="6123" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6124" i_stop="8028" i_length="1905">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8029" g_stop="8085" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="101" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8086" i_stop="8168" i_length="83">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8169" g_stop="8372" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="305" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8373" i_stop="8515" i_length="143">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.748" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8516" g_stop="8575" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="365" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8576" i_stop="8873" i_length="298">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8874" g_stop="9000" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="492" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9001" i_stop="9341" i_length="341">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9342" g_stop="9475" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="626" r_length="134" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E375804" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6080" e_stop="6123"/>
          <exon e_start="8029" e_stop="8085"/>
          <exon e_start="8169" e_stop="8372"/>
          <exon e_start="8516" e_stop="8575"/>
          <exon e_start="8874" e_stop="9000"/>
          <exon e_start="9342" e_stop="9475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGGAAAATTGATTTGAAAAATTCGACATGGATCTTAATCCAGTAAGCGTCGTAGTTTTCCTTATTTGATTCATTTTTTCACCTAATGCTGTAAATTGATACTTTGAAATCTCACAATTGTTTTTTTTTTGTGTGGGAATGAGTTGCATTGATGTTAGGGTTTTGTTTGAGCTCGTAATTATTTTATTTGATCTGTTGATTTGCTCTTTTGTTTGGATTTTCGTGTTTCCATTACTTTTCTACTGCATATCATGTGTTACGGATCTGTCTTTGGGAATTGAAAATTTCTGCTTTAGTGAATTGTATTACCCGGTAGGTGAATAATTTGTTTTAGTTGGATGAATTGTTACTGCAAATCTAGGTGAAATAATGGAGTTAGTAGGAAGTGTTGATGTGCTAGGCTCAAGGATATTATGGTGTCATAGTCACAATTTGATGAGTTTAGTATGGGACGAGTAGTCGAGTACTCCCTCATGTTGATCCCCTTGTTTACCAAGCAAGATCGAAATGATTGGGCATAAAGTGTCTGTAGATGGTGTCTTAAGTTTTGTCATTGATTGCTTATTTAATATAGTTGTATCTCTTTTTGAGAGACGACATAGTATTCCTGCTTTGTTCTATTCTCAAATCAATGTGAGCATTGCACGGATTTCACATCCAGACAAAGGAGGGAAAGTGCGGTTGGTTTATGTCTAGCGTAAAAGAAATATCTTCTAAATGTTGAGATCCTAATTTGCTTCAAGGAACAAATTCTTTTACTTGGACTGGACCTAAGTATTGTAAAATGGATGTAGAGGACTTTTTAGCCAATCATTTTAGCTTGGGAATGGAGCTTGGTGATTGTTTTGTATTACATAGTTTCTTGTGTGTATATATTGATGCAACTCTGAAATTTAAACTTCTAAATGTGTTATTTAATTTAATTACCTATATTTATTTATTTTAAAATGTGCTATTAATTTTGGATGACAGGTAAGTCCCACTGTCCCTCTATATCATGTCAGTTTCATGATCGGTGTGGTTAAGTTTTAGGTTAGTTTAGTAAAAGGTACGAATAGCAGTCTAGCACACTTACCTTGGAGGATAGAATCACATGGATGAAAGTTGTTTCAAAAGACTTATAAATTCTCAAAATCTACCTGCACTTTAGAGAGAAAATGACGGAAGTAAAGATCCATATAGAAGATACTGGCTAGTTGGAATTATAATCTATGTTGCTCGTACTCTTCAAAATGTCGACAGGTGTGTGTCAGGTCCTCCAAAAGTAGTGGTTTTTTTGGAGTATTCGACACGGGTGGGGCAACATATTTGGAGAGTCTGGGCAACATAGATTAAAACTTATTTATATTGGCATGCTTACATTAGCTTAAACATTATAGTAGTTTTTCTTACCCCTTTTTTCCTTGTTTAGATATTCGTATGTTAGTAGAAAATCTAGAGAACTCTAGCGGTAGATAATCCCAAACTATTGAAGATTGGAATGAAACTGGTCAGAATGTGGCGAAATAGATCTATAGTGCCAATATCAACTAGCATGGGATTGAGTGATAGTTGTTTTGTTATTGTTGTAATCTTTAAGTTCGTTCCTTTTAGATCAATCATCTGGATAAAACGGTGATATATGATCTAGGATAAGCAATGCAGGTAAAATAGGATTTTTTATCGGATGTCCCCGAAGGTAATTTTCTTTTTTAAAAAATAAAAATGGTTAACCTTTTACATAATACTCTTTAGCTTAGAGGAGTTTGTGGCCTTCCAGTTATCTTACTTTTCTCTGTTACTTATTGTAGATGATCTTCCCTTCTTATTTTCTCTCTTTTACTACCCTTGCTGCTCCTTTCTCCTTGCACCCCTAAACGCTCTCCGCTGCAAGGAAAGGAGGGAGCACATAGAATTTGTTGACTGATTCTATCATAAAGTTAATTAAGCTGTCACATTCTTTCTCAGCCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAGGTCTAGCTTATTACATATGCTTTTTATTTTAATGTCTTAGGTTGTAATTGCTTTCATTTAATACATTTTCTTTGCATTGACAGGCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAGGTGAGAAATCTTGTTTCAGGTTCCTTAGCATACATCTTTACCTTCAGACATTCGTTTATTTTTGAAGTGCTTGCCCATTTAGTCATTTTAATAATTACCTTTGTTGCCTTGGACAAACCTTTTTCCTTCACTTCTCCTTTCAGTCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACAGTAAGTGAAGACTCTATCACACTGGCTGCTTATTCTAATGTTCAATATAACAAACTGAGCACATGTATTGTACAATCAGAAAACAAGAAAAATCGGCAACAGGCACAAAATATATGTGGATAAGAACAATGGCCCTTCACACCTTGGCTTCTCGATTTTTTTTTCAGTTTTTACTTTTTCAAGATTCAGGCTTCAAATATATTCTAGAACTTCTTTTCTTTCTATCTGTACCTTATTTTTGCAAAGTGAAATAGTTAGTTGTTGATGTGTTGCACCTGATCCGTGTACTTTGTTGTAGGCTGTTGCTTGGTTCTTTCTCGCGATATTCTCCCTCATTAGGTTCCAAGCTGATTATCTTCTCGTTGTTGGAGTTTGCTTGACTCTCAGCGTCGCAAATATTGTTGGTTTTACTAGATGCCGCAAAGGTGTGTACTTACTTTAACTTCTATGGATTCTGCCTCTAACAATATCTTTACCTCTGGAGTTTTACTTTGTTTGGGTGCTCCAGTTTTCATGCATGAGCATAATATGTATGATGATAGATGTTGTCAGGTTCCCTCATTAGTTTGTGTATTCTCTTATTCGCTTCTGTTATGTATATATGTATGTATGTTGTTGCTTCTGTCTTGCTCTGCTTGTTTCAGTTCTCATTTTTGTGTTTGGTAGTCATGATCAGATCTCTGTGTACTATTCTCTTTTGAATTCTGCTTTCCAGTACGCCCTTACTGTTTAATATTCATATATTTTTCTTCTTTCTAATATCCAGATGCTAAGAAGCAGCTTCAAGCATTTGCAACCCAGACCCTCACTTCTCGGTTCTCCTCTACTCTACAGTCGGCATTTAGTGTTGTTTGAACAATTAATACAGAACAAGCTACTCGTGAGAGGAAACTGGTCGTC</genome_strand>
        <mrna_strand>CTAAGGAAAATTGATTTGAAAAATTCGACATGGATCTTAATCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAG...................................................................................GCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAG...............................................................................................................................................TCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACA..........................................................................................................................................................................................................................................................................................................GCTGTTGCTTGGTTCTTTCTCGCGATATTCTCCCTCATTAGGTTCCAAGCTGATTATCTTCTCGTTGTTGGAGTTTGCTTGACTCTCAGCGTCGCAAATATTGTTGGTTTTACTAGATGCCGCAAAG.....................................................................................................................................................................................................................................................................................................................................................ATGCTAAGAAGCAGCTTCAAGCATTTGCAACCCAGACCCTCACTTCTCGGTTCTCCTCTACTCTACAGTCGGCATTTAGTGTTGGTTGAACAATTAATACAGAACAAGCTACTCGTGAGAGGAAACTGGTCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204757" ref_strand="+" ref_description="SGN-E204757 [cLEC-14-A3]">
      <seq>ctaaggaaaattgatttgaaaaattcgacatggatcttaatccacctgcaggggaggactatgcacacccacagatatgttttttccatgtgctcttcaaggcagcagcattagcgttttatattctgtcagctttatttgttgatagttttgttatcatctttgtggtaactgttcttttagctgctcttgacttttgggtggttaagaacgtcagtggacgtattcttgtgggtttaaggtggtggaatgaaatagatgacaatggcgagagtgtgtggagatttgagtgccttgatcaagagtcaatggctcgcatgaacaagaaggattcctggctgttttggtggactttgtacctaacagctgttgcttggttctttctcgcgatattctccctcattaggttccaagctgattatcttctcgttgatggagtttgcttgactctcagcgtcgcaaatattgctggttttactagatgccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5780" stop="9296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6080" g_stop="6123" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6124" i_stop="8028" i_length="1905">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8029" g_stop="8085" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="101" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8086" i_stop="8168" i_length="83">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8169" g_stop="8372" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="305" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8373" i_stop="8515" i_length="143">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.748" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8516" g_stop="8575" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="365" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8576" i_stop="8873" i_length="298">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8874" g_stop="8996" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="488" r_length="123" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E204757" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6080" e_stop="6123"/>
          <exon e_start="8029" e_stop="8085"/>
          <exon e_start="8169" e_stop="8372"/>
          <exon e_start="8516" e_stop="8575"/>
          <exon e_start="8874" e_stop="8996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGGAAAATTGATTTGAAAAATTCGACATGGATCTTAATCCAGTAAGCGTCGTAGTTTTCCTTATTTGATTCATTTTTTCACCTAATGCTGTAAATTGATACTTTGAAATCTCACAATTGTTTTTTTTTTGTGTGGGAATGAGTTGCATTGATGTTAGGGTTTTGTTTGAGCTCGTAATTATTTTATTTGATCTGTTGATTTGCTCTTTTGTTTGGATTTTCGTGTTTCCATTACTTTTCTACTGCATATCATGTGTTACGGATCTGTCTTTGGGAATTGAAAATTTCTGCTTTAGTGAATTGTATTACCCGGTAGGTGAATAATTTGTTTTAGTTGGATGAATTGTTACTGCAAATCTAGGTGAAATAATGGAGTTAGTAGGAAGTGTTGATGTGCTAGGCTCAAGGATATTATGGTGTCATAGTCACAATTTGATGAGTTTAGTATGGGACGAGTAGTCGAGTACTCCCTCATGTTGATCCCCTTGTTTACCAAGCAAGATCGAAATGATTGGGCATAAAGTGTCTGTAGATGGTGTCTTAAGTTTTGTCATTGATTGCTTATTTAATATAGTTGTATCTCTTTTTGAGAGACGACATAGTATTCCTGCTTTGTTCTATTCTCAAATCAATGTGAGCATTGCACGGATTTCACATCCAGACAAAGGAGGGAAAGTGCGGTTGGTTTATGTCTAGCGTAAAAGAAATATCTTCTAAATGTTGAGATCCTAATTTGCTTCAAGGAACAAATTCTTTTACTTGGACTGGACCTAAGTATTGTAAAATGGATGTAGAGGACTTTTTAGCCAATCATTTTAGCTTGGGAATGGAGCTTGGTGATTGTTTTGTATTACATAGTTTCTTGTGTGTATATATTGATGCAACTCTGAAATTTAAACTTCTAAATGTGTTATTTAATTTAATTACCTATATTTATTTATTTTAAAATGTGCTATTAATTTTGGATGACAGGTAAGTCCCACTGTCCCTCTATATCATGTCAGTTTCATGATCGGTGTGGTTAAGTTTTAGGTTAGTTTAGTAAAAGGTACGAATAGCAGTCTAGCACACTTACCTTGGAGGATAGAATCACATGGATGAAAGTTGTTTCAAAAGACTTATAAATTCTCAAAATCTACCTGCACTTTAGAGAGAAAATGACGGAAGTAAAGATCCATATAGAAGATACTGGCTAGTTGGAATTATAATCTATGTTGCTCGTACTCTTCAAAATGTCGACAGGTGTGTGTCAGGTCCTCCAAAAGTAGTGGTTTTTTTGGAGTATTCGACACGGGTGGGGCAACATATTTGGAGAGTCTGGGCAACATAGATTAAAACTTATTTATATTGGCATGCTTACATTAGCTTAAACATTATAGTAGTTTTTCTTACCCCTTTTTTCCTTGTTTAGATATTCGTATGTTAGTAGAAAATCTAGAGAACTCTAGCGGTAGATAATCCCAAACTATTGAAGATTGGAATGAAACTGGTCAGAATGTGGCGAAATAGATCTATAGTGCCAATATCAACTAGCATGGGATTGAGTGATAGTTGTTTTGTTATTGTTGTAATCTTTAAGTTCGTTCCTTTTAGATCAATCATCTGGATAAAACGGTGATATATGATCTAGGATAAGCAATGCAGGTAAAATAGGATTTTTTATCGGATGTCCCCGAAGGTAATTTTCTTTTTTAAAAAATAAAAATGGTTAACCTTTTACATAATACTCTTTAGCTTAGAGGAGTTTGTGGCCTTCCAGTTATCTTACTTTTCTCTGTTACTTATTGTAGATGATCTTCCCTTCTTATTTTCTCTCTTTTACTACCCTTGCTGCTCCTTTCTCCTTGCACCCCTAAACGCTCTCCGCTGCAAGGAAAGGAGGGAGCACATAGAATTTGTTGACTGATTCTATCATAAAGTTAATTAAGCTGTCACATTCTTTCTCAGCCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAGGTCTAGCTTATTACATATGCTTTTTATTTTAATGTCTTAGGTTGTAATTGCTTTCATTTAATACATTTTCTTTGCATTGACAGGCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAGGTGAGAAATCTTGTTTCAGGTTCCTTAGCATACATCTTTACCTTCAGACATTCGTTTATTTTTGAAGTGCTTGCCCATTTAGTCATTTTAATAATTACCTTTGTTGCCTTGGACAAACCTTTTTCCTTCACTTCTCCTTTCAGTCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACAGTAAGTGAAGACTCTATCACACTGGCTGCTTATTCTAATGTTCAATATAACAAACTGAGCACATGTATTGTACAATCAGAAAACAAGAAAAATCGGCAACAGGCACAAAATATATGTGGATAAGAACAATGGCCCTTCACACCTTGGCTTCTCGATTTTTTTTTCAGTTTTTACTTTTTCAAGATTCAGGCTTCAAATATATTCTAGAACTTCTTTTCTTTCTATCTGTACCTTATTTTTGCAAAGTGAAATAGTTAGTTGTTGATGTGTTGCACCTGATCCGTGTACTTTGTTGTAGGCTGTTGCTTGGTTCTTTCTCGCGATATTCTCCCTCATTAGGTTCCAAGCTGATTATCTTCTCGTTGTTGGAGTTTGCTTGACTCTCAGCGTCGCAAATATTGTTGGTTTTACTAGATGCCGC</genome_strand>
        <mrna_strand>CTAAGGAAAATTGATTTGAAAAATTCGACATGGATCTTAATCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAG...................................................................................GCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAG...............................................................................................................................................TCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACA..........................................................................................................................................................................................................................................................................................................GCTGTTGCTTGGTTCTTTCTCGCGATATTCTCCCTCATTAGGTTCCAAGCTGATTATCTTCTCGTTGATGGAGTTTGCTTGACTCTCAGCGTCGCAAATATTGCTGGTTTTACTAGATGCCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724517" ref_strand="+" ref_description="SGN-E724517 [FC24BD06]">
      <seq>aaggaaaattgatttgaaaaattcgacatggatcttaatccacctgcaggggaggactatgcacacccacagatatgttttttccatgtgctcttcaaggcagcagcattagcgttttatattctgtcagctttatttgttgatagttttgttatcatctttgtggtaactgttcttttagctgctcttgacttttgggtggttaaaaacgtcagtggacgtattcttgtgggtttaaggtggtggaatgaaatagatgacaatggcgagagtgtgtggaaatttgagtgccttgatcaagagtcaatggctcgcatgaacaagaaggattcctggctgttttggtggactttgtacctaacagctgttgcttggttctttctcgcgatattctccctcattaggttccaagctgattatcttctcgttgttggagtttgcttgactctcagcgtcgcaaatattgttggttttactagatgccgcaaagatgctaaaaagcagcttcaagcatttgcaacccaaaccctcacttctcggttctcctctactctacagtcggcatttagtgttgtttgaacaattaatacagaacaagctactcgtgagaggaaactggtcgtcagtgtccacctctacaaacaatcatgtattgattatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5782" stop="9814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6082" g_stop="6123" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6124" i_stop="8028" i_length="1905">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8029" g_stop="8085" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="99" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8086" i_stop="8168" i_length="83">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8169" g_stop="8372" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="303" r_length="204" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8373" i_stop="8515" i_length="143">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.748" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8516" g_stop="8575" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="363" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8576" i_stop="8873" i_length="298">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8874" g_stop="9000" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="490" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9001" i_stop="9341" i_length="341">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9342" g_stop="9514" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="663" r_length="173" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E724517" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6082" e_stop="6123"/>
          <exon e_start="8029" e_stop="8085"/>
          <exon e_start="8169" e_stop="8372"/>
          <exon e_start="8516" e_stop="8575"/>
          <exon e_start="8874" e_stop="9000"/>
          <exon e_start="9342" e_stop="9514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAAATTGATTTGAAAAATTCGACATGGATCTTAATCCAGTAAGCGTCGTAGTTTTCCTTATTTGATTCATTTTTTCACCTAATGCTGTAAATTGATACTTTGAAATCTCACAATTGTTTTTTTTTTGTGTGGGAATGAGTTGCATTGATGTTAGGGTTTTGTTTGAGCTCGTAATTATTTTATTTGATCTGTTGATTTGCTCTTTTGTTTGGATTTTCGTGTTTCCATTACTTTTCTACTGCATATCATGTGTTACGGATCTGTCTTTGGGAATTGAAAATTTCTGCTTTAGTGAATTGTATTACCCGGTAGGTGAATAATTTGTTTTAGTTGGATGAATTGTTACTGCAAATCTAGGTGAAATAATGGAGTTAGTAGGAAGTGTTGATGTGCTAGGCTCAAGGATATTATGGTGTCATAGTCACAATTTGATGAGTTTAGTATGGGACGAGTAGTCGAGTACTCCCTCATGTTGATCCCCTTGTTTACCAAGCAAGATCGAAATGATTGGGCATAAAGTGTCTGTAGATGGTGTCTTAAGTTTTGTCATTGATTGCTTATTTAATATAGTTGTATCTCTTTTTGAGAGACGACATAGTATTCCTGCTTTGTTCTATTCTCAAATCAATGTGAGCATTGCACGGATTTCACATCCAGACAAAGGAGGGAAAGTGCGGTTGGTTTATGTCTAGCGTAAAAGAAATATCTTCTAAATGTTGAGATCCTAATTTGCTTCAAGGAACAAATTCTTTTACTTGGACTGGACCTAAGTATTGTAAAATGGATGTAGAGGACTTTTTAGCCAATCATTTTAGCTTGGGAATGGAGCTTGGTGATTGTTTTGTATTACATAGTTTCTTGTGTGTATATATTGATGCAACTCTGAAATTTAAACTTCTAAATGTGTTATTTAATTTAATTACCTATATTTATTTATTTTAAAATGTGCTATTAATTTTGGATGACAGGTAAGTCCCACTGTCCCTCTATATCATGTCAGTTTCATGATCGGTGTGGTTAAGTTTTAGGTTAGTTTAGTAAAAGGTACGAATAGCAGTCTAGCACACTTACCTTGGAGGATAGAATCACATGGATGAAAGTTGTTTCAAAAGACTTATAAATTCTCAAAATCTACCTGCACTTTAGAGAGAAAATGACGGAAGTAAAGATCCATATAGAAGATACTGGCTAGTTGGAATTATAATCTATGTTGCTCGTACTCTTCAAAATGTCGACAGGTGTGTGTCAGGTCCTCCAAAAGTAGTGGTTTTTTTGGAGTATTCGACACGGGTGGGGCAACATATTTGGAGAGTCTGGGCAACATAGATTAAAACTTATTTATATTGGCATGCTTACATTAGCTTAAACATTATAGTAGTTTTTCTTACCCCTTTTTTCCTTGTTTAGATATTCGTATGTTAGTAGAAAATCTAGAGAACTCTAGCGGTAGATAATCCCAAACTATTGAAGATTGGAATGAAACTGGTCAGAATGTGGCGAAATAGATCTATAGTGCCAATATCAACTAGCATGGGATTGAGTGATAGTTGTTTTGTTATTGTTGTAATCTTTAAGTTCGTTCCTTTTAGATCAATCATCTGGATAAAACGGTGATATATGATCTAGGATAAGCAATGCAGGTAAAATAGGATTTTTTATCGGATGTCCCCGAAGGTAATTTTCTTTTTTAAAAAATAAAAATGGTTAACCTTTTACATAATACTCTTTAGCTTAGAGGAGTTTGTGGCCTTCCAGTTATCTTACTTTTCTCTGTTACTTATTGTAGATGATCTTCCCTTCTTATTTTCTCTCTTTTACTACCCTTGCTGCTCCTTTCTCCTTGCACCCCTAAACGCTCTCCGCTGCAAGGAAAGGAGGGAGCACATAGAATTTGTTGACTGATTCTATCATAAAGTTAATTAAGCTGTCACATTCTTTCTCAGCCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAGGTCTAGCTTATTACATATGCTTTTTATTTTAATGTCTTAGGTTGTAATTGCTTTCATTTAATACATTTTCTTTGCATTGACAGGCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAGGTGAGAAATCTTGTTTCAGGTTCCTTAGCATACATCTTTACCTTCAGACATTCGTTTATTTTTGAAGTGCTTGCCCATTTAGTCATTTTAATAATTACCTTTGTTGCCTTGGACAAACCTTTTTCCTTCACTTCTCCTTTCAGTCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACAGTAAGTGAAGACTCTATCACACTGGCTGCTTATTCTAATGTTCAATATAACAAACTGAGCACATGTATTGTACAATCAGAAAACAAGAAAAATCGGCAACAGGCACAAAATATATGTGGATAAGAACAATGGCCCTTCACACCTTGGCTTCTCGATTTTTTTTTCAGTTTTTACTTTTTCAAGATTCAGGCTTCAAATATATTCTAGAACTTCTTTTCTTTCTATCTGTACCTTATTTTTGCAAAGTGAAATAGTTAGTTGTTGATGTGTTGCACCTGATCCGTGTACTTTGTTGTAGGCTGTTGCTTGGTTCTTTCTCGCGATATTCTCCCTCATTAGGTTCCAAGCTGATTATCTTCTCGTTGTTGGAGTTTGCTTGACTCTCAGCGTCGCAAATATTGTTGGTTTTACTAGATGCCGCAAAGGTGTGTACTTACTTTAACTTCTATGGATTCTGCCTCTAACAATATCTTTACCTCTGGAGTTTTACTTTGTTTGGGTGCTCCAGTTTTCATGCATGAGCATAATATGTATGATGATAGATGTTGTCAGGTTCCCTCATTAGTTTGTGTATTCTCTTATTCGCTTCTGTTATGTATATATGTATGTATGTTGTTGCTTCTGTCTTGCTCTGCTTGTTTCAGTTCTCATTTTTGTGTTTGGTAGTCATGATCAGATCTCTGTGTACTATTCTCTTTTGAATTCTGCTTTCCAGTACGCCCTTACTGTTTAATATTCATATATTTTTCTTCTTTCTAATATCCAGATGCTAAGAAGCAGCTTCAAGCATTTGCAACCCAGACCCTCACTTCTCGGTTCTCCTCTACTCTACAGTCGGCATTTAGTGTTGTTTGAACAATTAATACAGAACAAGCTACTCGTGAGAGGAAACTGGTCGTCAGTGTCCACCTCTACGAACAATCATGTATTGATTATATA</genome_strand>
        <mrna_strand>AAGGAAAATTGATTTGAAAAATTCGACATGGATCTTAATCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAG...................................................................................GCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAAAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAAATTTGAGTGCCTTGATCAAGAG...............................................................................................................................................TCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACA..........................................................................................................................................................................................................................................................................................................GCTGTTGCTTGGTTCTTTCTCGCGATATTCTCCCTCATTAGGTTCCAAGCTGATTATCTTCTCGTTGTTGGAGTTTGCTTGACTCTCAGCGTCGCAAATATTGTTGGTTTTACTAGATGCCGCAAAG.....................................................................................................................................................................................................................................................................................................................................................ATGCTAAAAAGCAGCTTCAAGCATTTGCAACCCAAACCCTCACTTCTCGGTTCTCCTCTACTCTACAGTCGGCATTTAGTGTTGTTTGAACAATTAATACAGAACAAGCTACTCGTGAGAGGAAACTGGTCGTCAGTGTCCACCTCTACAAACAATCATGTATTGATTATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367338" ref_strand="+" ref_description="SGN-E367338 [cLPT-7-G11]">
      <seq>gaaaattgatttgaaaaattcgacatggatcttaacccacctgcaggggaggactatgcacacccacagatatgttttttccatgtgctcttcaaggcagcagcattagcgttttatattctgtcagctttatttgttgatagttctgttatcatctttgtggtaactgttcttttagctgctcttgacttttgggtggttaagaacgtcagtggacgtattcttgtgggtttaaggtggtggaatgaaatagatgacaatggcgagagtgtgtggagatttgagtgccttgatcaagagtcaatggctcgcatgaacaagaaggattcctggctgttttggtggactttgtacctaacagctgttgcttggatctttctcgcgatattctccctcattaggttccaagctgattatcttctcgttgttggagtttgcttgactctcagcgtcgcaaatattgctggctttactagatgccgcaaagatgctaagaagcagcttcaagcatttgcaacccagaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5785" stop="9680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6085" g_stop="6123" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6124" i_stop="8028" i_length="1905">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8029" g_stop="8085" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="96" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8086" i_stop="8168" i_length="83">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8169" g_stop="8372" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="300" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8373" i_stop="8515" i_length="143">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.748" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8516" g_stop="8575" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="360" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8576" i_stop="8873" i_length="298">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8874" g_stop="9000" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="487" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9001" i_stop="9341" i_length="341">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9342" g_stop="9380" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="526" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E367338" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6085" e_stop="6123"/>
          <exon e_start="8029" e_stop="8085"/>
          <exon e_start="8169" e_stop="8372"/>
          <exon e_start="8516" e_stop="8575"/>
          <exon e_start="8874" e_stop="9000"/>
          <exon e_start="9342" e_stop="9380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTGATTTGAAAAATTCGACATGGATCTTAATCCAGTAAGCGTCGTAGTTTTCCTTATTTGATTCATTTTTTCACCTAATGCTGTAAATTGATACTTTGAAATCTCACAATTGTTTTTTTTTTGTGTGGGAATGAGTTGCATTGATGTTAGGGTTTTGTTTGAGCTCGTAATTATTTTATTTGATCTGTTGATTTGCTCTTTTGTTTGGATTTTCGTGTTTCCATTACTTTTCTACTGCATATCATGTGTTACGGATCTGTCTTTGGGAATTGAAAATTTCTGCTTTAGTGAATTGTATTACCCGGTAGGTGAATAATTTGTTTTAGTTGGATGAATTGTTACTGCAAATCTAGGTGAAATAATGGAGTTAGTAGGAAGTGTTGATGTGCTAGGCTCAAGGATATTATGGTGTCATAGTCACAATTTGATGAGTTTAGTATGGGACGAGTAGTCGAGTACTCCCTCATGTTGATCCCCTTGTTTACCAAGCAAGATCGAAATGATTGGGCATAAAGTGTCTGTAGATGGTGTCTTAAGTTTTGTCATTGATTGCTTATTTAATATAGTTGTATCTCTTTTTGAGAGACGACATAGTATTCCTGCTTTGTTCTATTCTCAAATCAATGTGAGCATTGCACGGATTTCACATCCAGACAAAGGAGGGAAAGTGCGGTTGGTTTATGTCTAGCGTAAAAGAAATATCTTCTAAATGTTGAGATCCTAATTTGCTTCAAGGAACAAATTCTTTTACTTGGACTGGACCTAAGTATTGTAAAATGGATGTAGAGGACTTTTTAGCCAATCATTTTAGCTTGGGAATGGAGCTTGGTGATTGTTTTGTATTACATAGTTTCTTGTGTGTATATATTGATGCAACTCTGAAATTTAAACTTCTAAATGTGTTATTTAATTTAATTACCTATATTTATTTATTTTAAAATGTGCTATTAATTTTGGATGACAGGTAAGTCCCACTGTCCCTCTATATCATGTCAGTTTCATGATCGGTGTGGTTAAGTTTTAGGTTAGTTTAGTAAAAGGTACGAATAGCAGTCTAGCACACTTACCTTGGAGGATAGAATCACATGGATGAAAGTTGTTTCAAAAGACTTATAAATTCTCAAAATCTACCTGCACTTTAGAGAGAAAATGACGGAAGTAAAGATCCATATAGAAGATACTGGCTAGTTGGAATTATAATCTATGTTGCTCGTACTCTTCAAAATGTCGACAGGTGTGTGTCAGGTCCTCCAAAAGTAGTGGTTTTTTTGGAGTATTCGACACGGGTGGGGCAACATATTTGGAGAGTCTGGGCAACATAGATTAAAACTTATTTATATTGGCATGCTTACATTAGCTTAAACATTATAGTAGTTTTTCTTACCCCTTTTTTCCTTGTTTAGATATTCGTATGTTAGTAGAAAATCTAGAGAACTCTAGCGGTAGATAATCCCAAACTATTGAAGATTGGAATGAAACTGGTCAGAATGTGGCGAAATAGATCTATAGTGCCAATATCAACTAGCATGGGATTGAGTGATAGTTGTTTTGTTATTGTTGTAATCTTTAAGTTCGTTCCTTTTAGATCAATCATCTGGATAAAACGGTGATATATGATCTAGGATAAGCAATGCAGGTAAAATAGGATTTTTTATCGGATGTCCCCGAAGGTAATTTTCTTTTTTAAAAAATAAAAATGGTTAACCTTTTACATAATACTCTTTAGCTTAGAGGAGTTTGTGGCCTTCCAGTTATCTTACTTTTCTCTGTTACTTATTGTAGATGATCTTCCCTTCTTATTTTCTCTCTTTTACTACCCTTGCTGCTCCTTTCTCCTTGCACCCCTAAACGCTCTCCGCTGCAAGGAAAGGAGGGAGCACATAGAATTTGTTGACTGATTCTATCATAAAGTTAATTAAGCTGTCACATTCTTTCTCAGCCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAGGTCTAGCTTATTACATATGCTTTTTATTTTAATGTCTTAGGTTGTAATTGCTTTCATTTAATACATTTTCTTTGCATTGACAGGCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAGGTGAGAAATCTTGTTTCAGGTTCCTTAGCATACATCTTTACCTTCAGACATTCGTTTATTTTTGAAGTGCTTGCCCATTTAGTCATTTTAATAATTACCTTTGTTGCCTTGGACAAACCTTTTTCCTTCACTTCTCCTTTCAGTCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACAGTAAGTGAAGACTCTATCACACTGGCTGCTTATTCTAATGTTCAATATAACAAACTGAGCACATGTATTGTACAATCAGAAAACAAGAAAAATCGGCAACAGGCACAAAATATATGTGGATAAGAACAATGGCCCTTCACACCTTGGCTTCTCGATTTTTTTTTCAGTTTTTACTTTTTCAAGATTCAGGCTTCAAATATATTCTAGAACTTCTTTTCTTTCTATCTGTACCTTATTTTTGCAAAGTGAAATAGTTAGTTGTTGATGTGTTGCACCTGATCCGTGTACTTTGTTGTAGGCTGTTGCTTGGTTCTTTCTCGCGATATTCTCCCTCATTAGGTTCCAAGCTGATTATCTTCTCGTTGTTGGAGTTTGCTTGACTCTCAGCGTCGCAAATATTGTTGGTTTTACTAGATGCCGCAAAGGTGTGTACTTACTTTAACTTCTATGGATTCTGCCTCTAACAATATCTTTACCTCTGGAGTTTTACTTTGTTTGGGTGCTCCAGTTTTCATGCATGAGCATAATATGTATGATGATAGATGTTGTCAGGTTCCCTCATTAGTTTGTGTATTCTCTTATTCGCTTCTGTTATGTATATATGTATGTATGTTGTTGCTTCTGTCTTGCTCTGCTTGTTTCAGTTCTCATTTTTGTGTTTGGTAGTCATGATCAGATCTCTGTGTACTATTCTCTTTTGAATTCTGCTTTCCAGTACGCCCTTACTGTTTAATATTCATATATTTTTCTTCTTTCTAATATCCAGATGCTAAGAAGCAGCTTCAAGCATTTGCAACCCAGACCC</genome_strand>
        <mrna_strand>GAAAATTGATTTGAAAAATTCGACATGGATCTTAACCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAG...................................................................................GCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTCTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAG...............................................................................................................................................TCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACA..........................................................................................................................................................................................................................................................................................................GCTGTTGCTTGGATCTTTCTCGCGATATTCTCCCTCATTAGGTTCCAAGCTGATTATCTTCTCGTTGTTGGAGTTTGCTTGACTCTCAGCGTCGCAAATATTGCTGGCTTTACTAGATGCCGCAAAG.....................................................................................................................................................................................................................................................................................................................................................ATGCTAAGAAGCAGCTTCAAGCATTTGCAACCCAGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714321" ref_strand="+" ref_description="SGN-E714321 [FB11AE06]">
      <seq>tcttaatccacctgcaggggaggactatgcacacccacagatatgttttttccatgtgctcttcaaggcagcagcattagcgttttatattctgtcagctttatttgttgatagttttgttatcatctttgtggtaactgttcttttagctgctcttgacttttgggtggttaagaacgtcagtggacgtattcttgtgggtttaaggtggtggaatgaaatagatgacaatggcgagagtgtgtggagatttgagtgccttgatcaagagtcaatggctcgcatgaacaagaaggattcctggctgttttggtggactttgtacctaacagctgttgcttggttctttctcgcgatattctccctcattaggttccaagctgattatcttctcgttgttggagtttgcttgactctcagcgtcgcaaatattgttggttttactagatgccgcaaagatgctaagaagcagcttcaagcatttgcaacccagaccctcacttctcggttctcctctactctacagtcggcatttagtgttgtttgaacaattaatacagaacaagctactcgtgagaggaaactggtcgtcagtgtccacctctacgaacaatcatgtattgattatataatggtggtttgtatacgctgtgaaattatgatggcacatatcggaaggatgcttaggagattttgacatggtgttaatttggacctctcctttattgaggtcttgtacatgcagaacatgaacgaactgggaaaacgtttttgttcctttcagttttcatgaatccaattgcttcattgtatttttaaaaaannaaaaanaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7723" stop="10001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8029" g_stop="8085" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="67" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8086" i_stop="8168" i_length="83">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8169" g_stop="8372" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="271" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8373" i_stop="8515" i_length="143">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.748" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8516" g_stop="8575" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="331" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8576" i_stop="8873" i_length="298">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8874" g_stop="9000" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="458" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9001" i_stop="9341" i_length="341">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9342" g_stop="9700" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="817" r_length="359" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="826" polyA_stop="843"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E714321" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8029" e_stop="8085"/>
          <exon e_start="8169" e_stop="8372"/>
          <exon e_start="8516" e_stop="8575"/>
          <exon e_start="8874" e_stop="9000"/>
          <exon e_start="9342" e_stop="9700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAGGTCTAGCTTATTACATATGCTTTTTATTTTAATGTCTTAGGTTGTAATTGCTTTCATTTAATACATTTTCTTTGCATTGACAGGCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAGGTGAGAAATCTTGTTTCAGGTTCCTTAGCATACATCTTTACCTTCAGACATTCGTTTATTTTTGAAGTGCTTGCCCATTTAGTCATTTTAATAATTACCTTTGTTGCCTTGGACAAACCTTTTTCCTTCACTTCTCCTTTCAGTCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACAGTAAGTGAAGACTCTATCACACTGGCTGCTTATTCTAATGTTCAATATAACAAACTGAGCACATGTATTGTACAATCAGAAAACAAGAAAAATCGGCAACAGGCACAAAATATATGTGGATAAGAACAATGGCCCTTCACACCTTGGCTTCTCGATTTTTTTTTCAGTTTTTACTTTTTCAAGATTCAGGCTTCAAATATATTCTAGAACTTCTTTTCTTTCTATCTGTACCTTATTTTTGCAAAGTGAAATAGTTAGTTGTTGATGTGTTGCACCTGATCCGTGTACTTTGTTGTAGGCTGTTGCTTGGTTCTTTCTCGCGATATTCTCCCTCATTAGGTTCCAAGCTGATTATCTTCTCGTTGTTGGAGTTTGCTTGACTCTCAGCGTCGCAAATATTGTTGGTTTTACTAGATGCCGCAAAGGTGTGTACTTACTTTAACTTCTATGGATTCTGCCTCTAACAATATCTTTACCTCTGGAGTTTTACTTTGTTTGGGTGCTCCAGTTTTCATGCATGAGCATAATATGTATGATGATAGATGTTGTCAGGTTCCCTCATTAGTTTGTGTATTCTCTTATTCGCTTCTGTTATGTATATATGTATGTATGTTGTTGCTTCTGTCTTGCTCTGCTTGTTTCAGTTCTCATTTTTGTGTTTGGTAGTCATGATCAGATCTCTGTGTACTATTCTCTTTTGAATTCTGCTTTCCAGTACGCCCTTACTGTTTAATATTCATATATTTTTCTTCTTTCTAATATCCAGATGCTAAGAAGCAGCTTCAAGCATTTGCAACCCAGACCCTCACTTCTCGGTTCTCCTCTACTCTACAGTCGGCATTTAGTGTTGTTTGAACAATTAATACAGAACAAGCTACTCGTGAGAGGAAACTGGTCGTCAGTGTCCACCTCTACGAACAATCATGTATTGATTATATAATGGTGGTTTGTATACGCTGTGAAATTATGATGGCACATATCGGAAGGATGCTTAGGAGATTTTGACATGGTGTTAATTTGGACCTCTCCTTTATTGAGGTCTTGTACATGCAGAACATGAACGAACTGGGAAAACGTTTTTGTTCCTTTCAGTTTTCATGAATCCAATTGCTTCATTGTATTTTT</genome_strand>
        <mrna_strand>CCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAG...................................................................................GCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAG...............................................................................................................................................TCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACA..........................................................................................................................................................................................................................................................................................................GCTGTTGCTTGGTTCTTTCTCGCGATATTCTCCCTCATTAGGTTCCAAGCTGATTATCTTCTCGTTGTTGGAGTTTGCTTGACTCTCAGCGTCGCAAATATTGTTGGTTTTACTAGATGCCGCAAAG.....................................................................................................................................................................................................................................................................................................................................................ATGCTAAGAAGCAGCTTCAAGCATTTGCAACCCAGACCCTCACTTCTCGGTTCTCCTCTACTCTACAGTCGGCATTTAGTGTTGTTTGAACAATTAATACAGAACAAGCTACTCGTGAGAGGAAACTGGTCGTCAGTGTCCACCTCTACGAACAATCATGTATTGATTATATAATGGTGGTTTGTATACGCTGTGAAATTATGATGGCACATATCGGAAGGATGCTTAGGAGATTTTGACATGGTGTTAATTTGGACCTCTCCTTTATTGAGGTCTTGTACATGCAGAACATGAACGAACTGGGAAAACGTTTTTGTTCCTTTCAGTTTTCATGAATCCAATTGCTTCATTGTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253473" ref_strand="+" ref_description="SGN-E253473 [cLEG-24-P4]">
      <seq>gcacacccacagatatgttttttccatgtgctcttcaaggcagcagcattagcgttttatattctgtcagctttatttgttgatagttttgttatcatctttgtggtaactgttcttttagctgctcttgacttttgggtggttaagaacgtcagtggacgtattcttgtgggtttaaggtggtggaatgaaatagatgacaatggcgagagtgtgtggagatttgagtgccttgatcaagagtcaatggctcgcatgaacaagaaggattcctggctgttttggtggactttgtacctaacagctgttgcttggttctttctcgcgatattctccctcattaggttccaagctgattatcttctcgttgttggagtttgcttgactctcagcgtcgcaaatattgttggttttactagatgccgcaaagatgctaagaagcagcttcaagcatttgcaacccagaccctcacttctcggttctcctctactctacagtcggcatttagtgttgtttgaacaattaatacagaacaagctactcgtgagaggaaactggtcgtcagtgtccacctctacgaacaatcatgtattgattatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7747" stop="9814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8047" g_stop="8085" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8086" i_stop="8168" i_length="83">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8169" g_stop="8372" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="243" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8373" i_stop="8515" i_length="143">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.748" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8516" g_stop="8575" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="303" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8576" i_stop="8873" i_length="298">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8874" g_stop="9000" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="430" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9001" i_stop="9341" i_length="341">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9342" g_stop="9514" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="603" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E253473" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8047" e_stop="8085"/>
          <exon e_start="8169" e_stop="8372"/>
          <exon e_start="8516" e_stop="8575"/>
          <exon e_start="8874" e_stop="9000"/>
          <exon e_start="9342" e_stop="9514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAGGTCTAGCTTATTACATATGCTTTTTATTTTAATGTCTTAGGTTGTAATTGCTTTCATTTAATACATTTTCTTTGCATTGACAGGCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAGGTGAGAAATCTTGTTTCAGGTTCCTTAGCATACATCTTTACCTTCAGACATTCGTTTATTTTTGAAGTGCTTGCCCATTTAGTCATTTTAATAATTACCTTTGTTGCCTTGGACAAACCTTTTTCCTTCACTTCTCCTTTCAGTCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACAGTAAGTGAAGACTCTATCACACTGGCTGCTTATTCTAATGTTCAATATAACAAACTGAGCACATGTATTGTACAATCAGAAAACAAGAAAAATCGGCAACAGGCACAAAATATATGTGGATAAGAACAATGGCCCTTCACACCTTGGCTTCTCGATTTTTTTTTCAGTTTTTACTTTTTCAAGATTCAGGCTTCAAATATATTCTAGAACTTCTTTTCTTTCTATCTGTACCTTATTTTTGCAAAGTGAAATAGTTAGTTGTTGATGTGTTGCACCTGATCCGTGTACTTTGTTGTAGGCTGTTGCTTGGTTCTTTCTCGCGATATTCTCCCTCATTAGGTTCCAAGCTGATTATCTTCTCGTTGTTGGAGTTTGCTTGACTCTCAGCGTCGCAAATATTGTTGGTTTTACTAGATGCCGCAAAGGTGTGTACTTACTTTAACTTCTATGGATTCTGCCTCTAACAATATCTTTACCTCTGGAGTTTTACTTTGTTTGGGTGCTCCAGTTTTCATGCATGAGCATAATATGTATGATGATAGATGTTGTCAGGTTCCCTCATTAGTTTGTGTATTCTCTTATTCGCTTCTGTTATGTATATATGTATGTATGTTGTTGCTTCTGTCTTGCTCTGCTTGTTTCAGTTCTCATTTTTGTGTTTGGTAGTCATGATCAGATCTCTGTGTACTATTCTCTTTTGAATTCTGCTTTCCAGTACGCCCTTACTGTTTAATATTCATATATTTTTCTTCTTTCTAATATCCAGATGCTAAGAAGCAGCTTCAAGCATTTGCAACCCAGACCCTCACTTCTCGGTTCTCCTCTACTCTACAGTCGGCATTTAGTGTTGTTTGAACAATTAATACAGAACAAGCTACTCGTGAGAGGAAACTGGTCGTCAGTGTCCACCTCTACGAACAATCATGTATTGATTATATA</genome_strand>
        <mrna_strand>GCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAG...................................................................................GCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAG...............................................................................................................................................TCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACA..........................................................................................................................................................................................................................................................................................................GCTGTTGCTTGGTTCTTTCTCGCGATATTCTCCCTCATTAGGTTCCAAGCTGATTATCTTCTCGTTGTTGGAGTTTGCTTGACTCTCAGCGTCGCAAATATTGTTGGTTTTACTAGATGCCGCAAAG.....................................................................................................................................................................................................................................................................................................................................................ATGCTAAGAAGCAGCTTCAAGCATTTGCAACCCAGACCCTCACTTCTCGGTTCTCCTCTACTCTACAGTCGGCATTTAGTGTTGTTTGAACAATTAATACAGAACAAGCTACTCGTGAGAGGAAACTGGTCGTCAGTGTCCACCTCTACGAACAATCATGTATTGATTATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375803" ref_strand="+" ref_description="SGN-E375803 [TUS-15-I6](-)">
      <seq>cgtcagtggacgtattcttgtgggtttaaggtggtgaaatgaaatagatgacaatggcgagagtgtgtggagatttgagtgccttgatcaagagtcaatggctcgcatgaacaagaaggattcctggctgttttggtggactttgtacctaacagctgttgcttggttctttctcgcgatattctccctcattaggttccaagctgattatcttctcgttgttggagtttgcttgactctcagcgtcgcaaatattgttggttttactagatgccgcaaagatgctaagaagcagcttcaagcatttgcaacccagaccctcacttctcggttctcctctactctacagtcggcatttagtgttgtttgaacaattaatacagaacaagctactcgtgagaggaaactggtcgtcagtgtccacctctacgaacaatcatgtattgattatataatggtggtttgtatacgctgtgaaattatgatggcacatatcggaaggatgcttaggagattttgacatggtgttaatttggacctctcctttattgaggtcttgtacatgcagaacatgaacgaactgggaaaacgtttttgttcctttcagttttcatgaatccaattgcttcattgtatttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7979" stop="10001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8279" g_stop="8372" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8373" i_stop="8515" i_length="143">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.748" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8516" g_stop="8575" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="154" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8576" i_stop="8873" i_length="298">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8874" g_stop="9000" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="281" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9001" i_stop="9341" i_length="341">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9342" g_stop="9700" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="640" r_length="359" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E375803" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8279" e_stop="8372"/>
          <exon e_start="8516" e_stop="8575"/>
          <exon e_start="8874" e_stop="9000"/>
          <exon e_start="9342" e_stop="9700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAGGTGAGAAATCTTGTTTCAGGTTCCTTAGCATACATCTTTACCTTCAGACATTCGTTTATTTTTGAAGTGCTTGCCCATTTAGTCATTTTAATAATTACCTTTGTTGCCTTGGACAAACCTTTTTCCTTCACTTCTCCTTTCAGTCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACAGTAAGTGAAGACTCTATCACACTGGCTGCTTATTCTAATGTTCAATATAACAAACTGAGCACATGTATTGTACAATCAGAAAACAAGAAAAATCGGCAACAGGCACAAAATATATGTGGATAAGAACAATGGCCCTTCACACCTTGGCTTCTCGATTTTTTTTTCAGTTTTTACTTTTTCAAGATTCAGGCTTCAAATATATTCTAGAACTTCTTTTCTTTCTATCTGTACCTTATTTTTGCAAAGTGAAATAGTTAGTTGTTGATGTGTTGCACCTGATCCGTGTACTTTGTTGTAGGCTGTTGCTTGGTTCTTTCTCGCGATATTCTCCCTCATTAGGTTCCAAGCTGATTATCTTCTCGTTGTTGGAGTTTGCTTGACTCTCAGCGTCGCAAATATTGTTGGTTTTACTAGATGCCGCAAAGGTGTGTACTTACTTTAACTTCTATGGATTCTGCCTCTAACAATATCTTTACCTCTGGAGTTTTACTTTGTTTGGGTGCTCCAGTTTTCATGCATGAGCATAATATGTATGATGATAGATGTTGTCAGGTTCCCTCATTAGTTTGTGTATTCTCTTATTCGCTTCTGTTATGTATATATGTATGTATGTTGTTGCTTCTGTCTTGCTCTGCTTGTTTCAGTTCTCATTTTTGTGTTTGGTAGTCATGATCAGATCTCTGTGTACTATTCTCTTTTGAATTCTGCTTTCCAGTACGCCCTTACTGTTTAATATTCATATATTTTTCTTCTTTCTAATATCCAGATGCTAAGAAGCAGCTTCAAGCATTTGCAACCCAGACCCTCACTTCTCGGTTCTCCTCTACTCTACAGTCGGCATTTAGTGTTGTTTGAACAATTAATACAGAACAAGCTACTCGTGAGAGGAAACTGGTCGTCAGTGTCCACCTCTACGAACAATCATGTATTGATTATATAATGGTGGTTTGTATACGCTGTGAAATTATGATGGCACATATCGGAAGGATGCTTAGGAGATTTTGACATGGTGTTAATTTGGACCTCTCCTTTATTGAGGTCTTGTACATGCAGAACATGAACGAACTGGGAAAACGTTTTTGTTCCTTTCAGTTTTCATGAATCCAATTGCTTCATTGTATTTTT</genome_strand>
        <mrna_strand>CGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGAAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAG...............................................................................................................................................TCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACA..........................................................................................................................................................................................................................................................................................................GCTGTTGCTTGGTTCTTTCTCGCGATATTCTCCCTCATTAGGTTCCAAGCTGATTATCTTCTCGTTGTTGGAGTTTGCTTGACTCTCAGCGTCGCAAATATTGTTGGTTTTACTAGATGCCGCAAAG.....................................................................................................................................................................................................................................................................................................................................................ATGCTAAGAAGCAGCTTCAAGCATTTGCAACCCAGACCCTCACTTCTCGGTTCTCCTCTACTCTACAGTCGGCATTTAGTGTTGTTTGAACAATTAATACAGAACAAGCTACTCGTGAGAGGAAACTGGTCGTCAGTGTCCACCTCTACGAACAATCATGTATTGATTATATAATGGTGGTTTGTATACGCTGTGAAATTATGATGGCACATATCGGAAGGATGCTTAGGAGATTTTGACATGGTGTTAATTTGGACCTCTCCTTTATTGAGGTCTTGTACATGCAGAACATGAACGAACTGGGAAAACGTTTTTGTTCCTTTCAGTTTTCATGAATCCAATTGCTTCATTGTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302829" ref_strand="+" ref_description="SGN-E302829 [cLEY-2-C17]">
      <seq>ctcgtgccgaattcggcacgagggttaatttggacctctcctttattgaggtcttgtacatgcagaacatgaacgaactgggaaaacgtttttgttcctttcagttttcatgaatccaattgcttcattgtatttttattttttttgcaccgcacggctggtgaatcgacgtatgggccatatgcataaatgtatctgaaatttgccattcacgttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9266" stop="10080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9564" g_stop="9790" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E302829" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9564" e_stop="9790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTAGGAGATTTTGACATG-GTGTTAATTTGGACCTCTCCTTTATTGAGGTCTTGTACATGCAGAACATGAACGAACTGGGAAAACGTTTTTGTTCCTTTCAGTTTTCATGAATCCAATTGCTTCATTGTATTTTTATTTTTTTTGCACCGCACGGCTGGTGAATCGACGTATGGGCCATATGCATAAATGTATCTGAAATTTGCCATTCACGTTCTGCAGCAAGT</genome_strand>
        <mrna_strand>CTCGT-GCCGAATTCGGCACGAGGGTTAATTTGGACCTCTCCTTTATTGAGGTCTTGTACATGCAGAACATGAACGAACTGGGAAAACGTTTTTGTTCCTTTCAGTTTTCATGAATCCAATTGCTTCATTGTATTTTTATTTTTTTTGCACCGCACGGCTGGTGAATCGACGTATGGGCCATATGCATAAATGTATCTGAAATTTGCCATTCACGTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323015" ref_strand="+" ref_description="SGN-E323015 [cTOB-30-F16]">
      <seq>atatggacatcaagaaaatcatcatagcccttcttcttcttctttattctctgccccaagttcttcttcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcatccaattctgacttcaatggtgccagattgatctcctcatttcaatataagaggaaaccatgcttgatcaaaaggagcattgcaagttacaccctcgagtgaaaagaaaatcctgataatgagaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccatgttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatatctcctccaagttattgcacttgaaaggtgacagaatggatttcgattttgtgaatagcaatctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctataaaatacatctactgctcttcagctggtgtataccttaagactgattatttacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10534" stop="12882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10834" g_stop="11044" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="347" r_length="136" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="434" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.502" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="525" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="579" r_length="54" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.779" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12582" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="631" r_length="52" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E323015" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10834" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGACATCAAGAAAATCATCATAGCCCTTCTTCTTCTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTG-TCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCA</genome_strand>
        <mrna_strand>ATATGGACATCAAGAAAATCATCATAGCCCTTCTTCTTCTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCATCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGATCAAAAGGAGCATTGCAAGTTACACCCTCGAGTGAAAAGAAAATCCTGATAATGAGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAT......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATATCTCCTCCAAG..............................................................................................TTATTGCACTTGAAAGGTGACAGAATGGATTTCGATTTTGTGAATAGCAATCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTATAA-A.....................................................................................................................................................................................................................ATACATCTACTGCTCTTCAGCTGGTGTATACCTTAAGACTGATTATTTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727021" ref_strand="+" ref_description="SGN-E727021 [LA13CA07]">
      <seq>gaaaatcatcatagcccttcttcttcttctttattctctgccccaagttcttcttcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaactacaatcctgttgaagagtggttcttccaccgattgaaagctggtcgcccaattccgattcctaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10547" stop="13511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10847" g_stop="11044" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="333" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="420" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="511" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="566" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="627" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13025" g_stop="13211" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="814" r_length="187" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E727021" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10847" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCATCATAGCCCTTCTTCTTCTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACT</genome_strand>
        <mrna_strand>GAAAATCATCATAGCCCTTCTTCTTCTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAAGCTGGTCGCCCAATTCCGATTCCTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293044" ref_strand="+" ref_description="SGN-E293044 [cLET-12-K15]">
      <seq>aaaatcatcatagcccttcttcttcttctttattctctgccccaagttcttcttcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10548" stop="12611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10848" g_stop="11044" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="332" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="419" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="510" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12311" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="559" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E293044" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10848" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCATCATAGCCCTTCTTCTTCTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCT</genome_strand>
        <mrna_strand>AAAATCATCATAGCCCTTCTTCTTCTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200786" ref_strand="+" ref_description="SGN-E200786 [cLEC-9-O14]">
      <seq>atcgcccttcttcttcttctttatcctctgccccaagttctttttcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctgctcatttcagtctcagaggaaaccatgcttgtcaaaaggagcattgcaagttacagctctccagtgaaaagaaaatcctgataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10557" stop="11934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10857" g_stop="11044" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11634" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="262" r_length="74" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E200786" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10857" e_stop="11044"/>
          <exon e_start="11562" e_stop="11634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCCCTTCTTCTTCTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGC-CTCGAGTGAAAAGAAAATCCTGATAA</genome_strand>
        <mrna_strand>ATCGCCCTTCTTCTTCTTCTTTATCCTCTGCCCCAAGTTCTTTTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTGCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCTCTCCAGTGAAAAGAAAATCCTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740640" ref_strand="+" ref_description="SGN-E740640 [LC22BC06]">
      <seq>cttcttcttctttattctctgccccaagttcttcttcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaactacaatcctgttgaagagtggttcttccaccgattgaaggctggtcgcccaattccgattcctaactcagggatgcaaataactcaacttggacatgtgaaggatcttgcaaaagcttttgttcaagttcttggaaatgagaaagcaagcaagcaagtatttaacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10566" stop="13922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10866" g_stop="11044" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="314" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="401" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="492" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="547" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="608" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13025" g_stop="13246" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="830" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="13247" i_stop="13556" i_length="310">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="13557" g_stop="13622" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="831" r_stop="896" r_length="66" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E740640" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10866" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13246"/>
          <exon e_start="13557" e_stop="13622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAGGTTAGTCAGCACATATTAAAAGAGTAGTTCACATCTTTCTATTGTAAACTTCAAGCAATGCTATCGCCCTAGAAGTTCAACGGAGATGTCTTTGCTTAGGTCCTATACATATCCAATCTTTGCAAGTGGCTTCCATTTAGTAAAAACCAGGAAATATGTCTTTTCAAATAGGAGCAACGTACTCCTTAGTTCACTTTCAGGCAATACTTCAGTTCGACAGCATTATAACATAATGAGCTTAGGAATCGTCTAAAGAATCACAGCCTTGCATCTATGTGATAATATTTTTGCTTTCGGTTGATATTGGCAGGATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATA</genome_strand>
        <mrna_strand>CTTCTTCTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAG......................................................................................................................................................................................................................................................................................................................GATCTTGCAAAAGCTTTTGTTCAAGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327285" ref_strand="+" ref_description="SGN-E327285 [cTOC-19-H11]">
      <seq>ttcttcttctttattctctgccccaagttcttcttcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtangcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaaactacatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10567" stop="13453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10867" g_stop="11044" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="313" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="400" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="491" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="546" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="607" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13025" g_stop="13153" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="736" r_length="129" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E327285" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10867" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTT-AACTACAATCCT</genome_strand>
        <mrna_strand>TTCTTCTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTANGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAAACTAC-ATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329019" ref_strand="+" ref_description="SGN-E329019 [cTOC-24-C2]">
      <seq>ttcttcttctttattctctgccccaagttcttcttcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10567" stop="12873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10867" g_stop="11044" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="313" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="400" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="491" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="546" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12573" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="589" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E329019" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10867" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGAT</genome_strand>
        <mrna_strand>TTCTTCTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331231" ref_strand="+" ref_description="SGN-E331231 [cTOD-6-G12]">
      <seq>ttcttcttctttattctctgccccaagttcttcttcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagaaggctatgatgttgtgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10567" stop="12409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10867" g_stop="11044" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="313" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="400" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12109" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="482" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E331231" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10867" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATG</genome_strand>
        <mrna_strand>TTCTTCTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAAGGCTATGATGTTGTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344150" ref_strand="+" ref_description="SGN-E344150 [cTOF-16-I20]">
      <seq>ttcttctttattctctgccccaagttcttcttcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10570" stop="12893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10870" g_stop="11044" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="310" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="397" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="488" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="543" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="604" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E344150" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10870" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG</genome_strand>
        <mrna_strand>TTCTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365933" ref_strand="+" ref_description="SGN-E365933 [cLPT-11-D20]">
      <seq>ttcttctttattctctgccccaagttcttcttcacactgaggaaggaaaaaaaagcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcctgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgtttctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcagaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcggagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10570" stop="12611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10870" g_stop="11044" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="310" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="397" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="488" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12311" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="537" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E365933" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10870" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCT</genome_strand>
        <mrna_strand>TTCTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAAGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCCTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTTCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCAGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCGGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309467" ref_strand="+" ref_description="SGN-E309467 [cTOA-2-E6]">
      <seq>tcttctttattctcttccccaagttcttcttcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggcgacagaatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10571" stop="12357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10871" g_stop="11044" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="309" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="396" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12057" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="426" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E309467" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10871" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGAT</genome_strand>
        <mrna_strand>TCTTCTTTATTCTCTTCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGCGACAGAATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740075" ref_strand="+" ref_description="SGN-E740075 [LC20AA03]">
      <seq>cttctttattctctgccccaagttcttcttcacactgaggaacgaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaactacaatcctgttgaagagtggttcttccaccgattgaaggctggtcgcccaattccgattcctaactcanggatgcaaataactcaacttggacatgtgaaggatcttgcaaaggcttttgttcangttcttggaaatgagaaaagcagcaagcaagtatttaacatatccggagagaaatatgtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10572" stop="13942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10872" g_stop="11044" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="308" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="395" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="486" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="541" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="602" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13025" g_stop="13246" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="824" r_length="222" r_score="0.995"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="13247" i_stop="13556" i_length="310">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="13557" g_stop="13642" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="825" r_stop="910" r_length="86" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E740075" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>910</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10872" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13246"/>
          <exon e_start="13557" e_stop="13642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAGGTTAGTCAGCACATATTAAAAGAGTAGTTCACATCTTTCTATTGTAAACTTCAAGCAATGCTATCGCCCTAGAAGTTCAACGGAGATGTCTTTGCTTAGGTCCTATACATATCCAATCTTTGCAAGTGGCTTCCATTTAGTAAAAACCAGGAAATATGTCTTTTCAAATAGGAGCAACGTACTCCTTAGTTCACTTTCAGGCAATACTTCAGTTCGACAGCATTATAACATAATGAGCTTAGGAATCGTCTAAAGAATCACAGCCTTGCATCTATGTGATAATATTTTTGCTTTCGGTTGATATTGGCAGGATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCAC</genome_strand>
        <mrna_strand>CTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAACGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCANGGATGCAAATAACTCAACTTGGACATGTGAAG......................................................................................................................................................................................................................................................................................................................GATCTTGCAAAGGCTTTTGTTCANGTTCTTGGAAATGAGAAAAGCAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737158" ref_strand="+" ref_description="SGN-E737158 [LC08CG11]">
      <seq>cttctttattctctgccccaagttcttcttcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaactacaatcctgttgaagagtggttcttccaccgattgaaggctggtcgcccaattccgattcctaactcagggatgcaaataactcaacttggacatgtgaaggatcttgcaaaggcttttgttcaggttcttggaaatgagaaagcaagcaagcaagtatttaacatatccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10572" stop="13926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10872" g_stop="11044" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="308" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="395" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="486" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="541" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="602" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13025" g_stop="13246" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="824" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="13247" i_stop="13556" i_length="310">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="13557" g_stop="13626" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="825" r_stop="894" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E737158" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10872" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13246"/>
          <exon e_start="13557" e_stop="13626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAGGTTAGTCAGCACATATTAAAAGAGTAGTTCACATCTTTCTATTGTAAACTTCAAGCAATGCTATCGCCCTAGAAGTTCAACGGAGATGTCTTTGCTTAGGTCCTATACATATCCAATCTTTGCAAGTGGCTTCCATTTAGTAAAAACCAGGAAATATGTCTTTTCAAATAGGAGCAACGTACTCCTTAGTTCACTTTCAGGCAATACTTCAGTTCGACAGCATTATAACATAATGAGCTTAGGAATCGTCTAAAGAATCACAGCCTTGCATCTATGTGATAATATTTTTGCTTTCGGTTGATATTGGCAGGATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCG</genome_strand>
        <mrna_strand>CTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAG......................................................................................................................................................................................................................................................................................................................GATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739756" ref_strand="+" ref_description="SGN-E739756 [LC18CH08]">
      <seq>cttctttattctctgccccaagttcttcttcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaactacaatcctgttgaagagtggttcttccaccgattgaaggctggtcgcccaattccgattcctaactcagggatgcaaataactcaacttgaacatgtgaaggatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10572" stop="13549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10872" g_stop="11044" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="308" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="395" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="486" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="541" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="602" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13025" g_stop="13246" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="824" r_length="222" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E739756" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10872" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAG</genome_strand>
        <mrna_strand>CTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGAACATGTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347427" ref_strand="+" ref_description="SGN-E347427 [cTOF-33-K3]">
      <seq>ttctttattctctgccccaagttcttcttcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcangtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10573" stop="13444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10873" g_stop="11044" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="307" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="394" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="485" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="540" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="601" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13025" g_stop="13144" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="721" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E347427" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10873" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAAC</genome_strand>
        <mrna_strand>TTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCANGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342724" ref_strand="+" ref_description="SGN-E342724 [cTOF-7-E19]">
      <seq>tttattctctgccccaagttcttcttcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcangtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgntagtatcacgagatgttaattggacttctctaaggcctgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10576" stop="13425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10876" g_stop="11044" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="304" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="391" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="482" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="537" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="598" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13025" g_stop="13125" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="699" r_length="101" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E342724" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10876" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTA</genome_strand>
        <mrna_strand>TTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCANGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGNTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296665" ref_strand="+" ref_description="SGN-E296665 [cLET-39-K9]">
      <seq>ctctgccccaagttcttcttcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10582" stop="13343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10882" g_stop="11044" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="298" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="385" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="476" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="531" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="592" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13025" g_stop="13043" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="611" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E296665" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10882" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGA</genome_strand>
        <mrna_strand>CTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327793" ref_strand="+" ref_description="SGN-E327793 [cTOC-20-L7]">
      <seq>ctgccccaagttcttcttcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10584" stop="12893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10884" g_stop="11044" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="296" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="383" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="474" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="529" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="590" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E327793" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10884" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG</genome_strand>
        <mrna_strand>CTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289097" ref_strand="+" ref_description="SGN-E289097 [cLES-18-I4]">
      <seq>tgccccaagttcttcttcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10585" stop="11934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10885" g_stop="11044" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11634" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="233" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E289097" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>233</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10885" e_stop="11044"/>
          <exon e_start="11562" e_stop="11634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAA</genome_strand>
        <mrna_strand>TGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362512" ref_strand="+" ref_description="SGN-E362512 [cLPP-1-E7]">
      <seq>ccatttcttcttcacactgaggaaggaaaaggcaacaaatcagcaacaatatggctagtttggttgctattcaacccaaacagccttctttctctgttctcccttcttcccattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcctgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatccttataatgggaggcacacgattcattggtgtgtttctatccagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatatctcaacaattaccaggtgaatcagaccaggattatgctgatttctcctctaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagtagtctttctgcagagggctatgatgttgtatatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatatactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10590" stop="12893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10890" g_stop="11044" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="287" r_length="135" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="374" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.502" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="465" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="520" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="581" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E362512" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10890" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG</genome_strand>
        <mrna_strand>CCATTTCTTCTTCACACTGAGGAAGG---AAAAGGCAACAAATCAGCAACAATATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTGTTCTCCCTTCTTCCCATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCCTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTTATAATGGGAGGCACACGATTCATTGGTGTGTTTCTATCCAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATATCTCAACAATTACCAGGTGAATCAGACCAGGATTATGCTGATTTCTCCTCTAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGTAGTCTTTCTGCAGAGGGCTATGATGTTGTATATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATATACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342654" ref_strand="+" ref_description="SGN-E342654 [cTOF-7-J3]">
      <seq>aagttcttcttcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10591" stop="12893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10891" g_stop="11044" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="289" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="467" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="522" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="583" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E342654" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10891" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG</genome_strand>
        <mrna_strand>AAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343616" ref_strand="+" ref_description="SGN-E343616 [cTOF-20-D21]">
      <seq>gttcttcttcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtangcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10593" stop="13447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10893" g_stop="11044" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="287" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="374" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="465" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="520" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="581" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13025" g_stop="13147" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="704" r_length="123" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E343616" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10893" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTAC</genome_strand>
        <mrna_strand>GTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTANGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321468" ref_strand="+" ref_description="SGN-E321468 [cTOB-23-F7]">
      <seq>ttcttcttcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaactacaatcctngttgaagagtggttcttccaccgattgaaggctggtcgcccaattccgattcctaactcaggnatgcaaataactcaacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10594" stop="13536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10894" g_stop="11044" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="286" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="373" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="464" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="519" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="580" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13025" g_stop="13236" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="793" r_length="213" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E321468" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10894" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCT-GTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGG</genome_strand>
        <mrna_strand>TTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTNGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGNATGCAAATAACTCAACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346443" ref_strand="+" ref_description="SGN-E346443 [cTOF-23-F9]">
      <seq>ttcttcttcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcangtgacccgaagagtangcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10594" stop="13412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10894" g_stop="11044" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="286" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="373" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="464" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="519" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="580" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13025" g_stop="13112" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="668" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E346443" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10894" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTC</genome_strand>
        <mrna_strand>TTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCANGTGACCCGAAGAGTANGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272632" ref_strand="+" ref_description="SGN-E272632 [cLEM-21-D16]">
      <seq>ttcttcttcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10594" stop="12889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10894" g_stop="11044" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="286" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="373" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="464" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="519" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12589" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="578" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E272632" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10894" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTG</genome_strand>
        <mrna_strand>TTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365870" ref_strand="+" ref_description="SGN-E365870 [cLPT-11-A10]">
      <seq>ttcttcttcacactgaggaaggaaaaaaaagcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcctgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgtttctatcgagacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10594" stop="11976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10894" g_stop="11044" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11676" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="266" r_length="115" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E365870" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10894" e_stop="11044"/>
          <exon e_start="11562" e_stop="11676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTC</genome_strand>
        <mrna_strand>TTCTTCTTCACACTGAGGAAGGAAAAAAAAGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCCTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTTCTATCGAGACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358654" ref_strand="+" ref_description="SGN-E358654 [cLHT-22-D21]">
      <seq>tcttcacactgaggaaggaaaaaaaggcaccaaataaaaaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcctgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgtttctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggaaccaatattggatgcattacctaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10598" stop="12611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10898" g_stop="11044" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="282" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="369" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="460" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12311" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="509" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E358654" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10898" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCT</genome_strand>
        <mrna_strand>TCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATAAAAAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCCTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTTCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAACCAATATTGGATGCATTACCTAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266754" ref_strand="+" ref_description="SGN-E266754 [cLEI-7-O13]">
      <seq>gcttcacactttaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaagccaccaggttactctattcacaagaagaaaagctccaatctctcaacaattgccaagtgaatcggaccaggattatgctgatttctcctccaagttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10599" stop="12237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10898" g_stop="11044" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="283" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="370" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.502" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12033" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="376" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E266754" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10898" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCACAC-TGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTG</genome_strand>
        <mrna_strand>GCTTCACACTTTAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAAGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAAGAAAAGCTCCAATCTCTCAACAATTGCCAAGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293953" ref_strand="+" ref_description="SGN-E293953 [cLET-13-B23]">
      <seq>tcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttaatatcacgagatgttaattggacttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10601" stop="13412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10901" g_stop="11044" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="279" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="366" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="457" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="512" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="573" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13025" g_stop="13112" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="661" r_length="88" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E293953" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10901" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTC</genome_strand>
        <mrna_strand>TCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAATATCACGAGATGTTAATTGGACTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373799" ref_strand="+" ref_description="SGN-E373799 [TUS-31-M12]">
      <seq>tcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10601" stop="13412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10901" g_stop="11044" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="279" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="366" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="457" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="512" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="573" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13025" g_stop="13112" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="661" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E373799" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10901" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTC</genome_strand>
        <mrna_strand>TCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292097" ref_strand="+" ref_description="SGN-E292097 [cLET-1-G19]">
      <seq>tcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaagtgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10601" stop="12893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10901" g_stop="11044" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="279" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="366" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="457" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="512" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="573" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E292097" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10901" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG</genome_strand>
        <mrna_strand>TCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294828" ref_strand="+" ref_description="SGN-E294828 [cLET-17-L10]">
      <seq>tcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10601" stop="12612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10901" g_stop="11044" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="279" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="366" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="457" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12312" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="507" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E294828" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10901" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTA</genome_strand>
        <mrna_strand>TCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293356" ref_strand="+" ref_description="SGN-E293356 [cLET-18-O17]">
      <seq>tcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttgggtgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagactgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaagagcatcgcaagttacaacctcgagtgaaaacaaaatcctgataatgggaggcacgcgattcataggtgtgttcctatcgagacttcttgagaaagaaggccaccaccttactctattcacaagaggaaaagctccaatctctcaacaattgccaggcgaatcggaccaacattatgctgatttctcctcccagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcaaaaggctatgatgttgtgtatgacataaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10601" stop="12417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10901" g_stop="11044" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="279" r_length="135" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="366" r_length="87" r_score="0.943"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12117" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="456" r_length="90" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E293356" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10901" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAAT</genome_strand>
        <mrna_strand>TCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGGTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGACTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAAGAGCATCGCAAGTTACAACCTCGAGTGAAAACAAAATCCTGATAATGGGAGGCACGCGATTCATAGGTGTGTTCCTATCGAGACTTCTTGAGAAAGAAGGCCACCAC......................................................................................................................................................CTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGCGAATCGGACCAACATTATGCTGATTTCTCCTCCCAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAAAAGGCTATGATGTTGTGTATGACATAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736379" ref_strand="+" ref_description="SGN-E736379 [LC05CC07]">
      <seq>gaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaactacaatcctgttgaagagtggttcttccaccgattgaaggctggtcgcccaattccgattcctaactcagggatgcaaataactcaacttggacatgtgaaggatcttgcaaaggcttttgttcaggttcttggaaatgagaaagcaagcaagcaagtatttaacatatccgggagagaatatgtcacatttgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10611" stop="13953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10911" g_stop="11044" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="269" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="356" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="447" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="502" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="563" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13025" g_stop="13246" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="785" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="13247" i_stop="13556" i_length="310">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="13557" g_stop="13653" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="882" r_length="97" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E736379" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10911" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13246"/>
          <exon e_start="13557" e_stop="13653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAGGTTAGTCAGCACATATTAAAAGAGTAGTTCACATCTTTCTATTGTAAACTTCAAGCAATGCTATCGCCCTAGAAGTTCAACGGAGATGTCTTTGCTTAGGTCCTATACATATCCAATCTTTGCAAGTGGCTTCCATTTAGTAAAAACCAGGAAATATGTCTTTTCAAATAGGAGCAACGTACTCCTTAGTTCACTTTCAGGCAATACTTCAGTTCGACAGCATTATAACATAATGAGCTTAGGAATCGTCTAAAGAATCACAGCCTTGCATCTATGTGATAATATTTTTGCTTTCGGTTGATATTGGCAGGATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCC-GGAGAGAAATATGTCACATTTGATGGAT</genome_strand>
        <mrna_strand>GAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAG......................................................................................................................................................................................................................................................................................................................GATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGGAGAG-AATATGTCACATTTGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740937" ref_strand="+" ref_description="SGN-E740937 [LC23CC05]">
      <seq>gaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaactacaatcctgttgaagagtggttcttccaccgattgaaggctggtcgcccaattccgattcctaactcagggatgcaaataactcaacttggacatgtgaaggatcttgcaaaggcttttgttcangttcttggaaatgagaaagcaagcaagcaagtatttaacatatccggagagaaatatgtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10611" stop="13942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10911" g_stop="11044" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="269" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="356" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="447" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="502" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="563" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13025" g_stop="13246" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="785" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="13247" i_stop="13556" i_length="310">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="13557" g_stop="13642" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="871" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E740937" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10911" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13246"/>
          <exon e_start="13557" e_stop="13642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAGGTTAGTCAGCACATATTAAAAGAGTAGTTCACATCTTTCTATTGTAAACTTCAAGCAATGCTATCGCCCTAGAAGTTCAACGGAGATGTCTTTGCTTAGGTCCTATACATATCCAATCTTTGCAAGTGGCTTCCATTTAGTAAAAACCAGGAAATATGTCTTTTCAAATAGGAGCAACGTACTCCTTAGTTCACTTTCAGGCAATACTTCAGTTCGACAGCATTATAACATAATGAGCTTAGGAATCGTCTAAAGAATCACAGCCTTGCATCTATGTGATAATATTTTTGCTTTCGGTTGATATTGGCAGGATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCAC</genome_strand>
        <mrna_strand>GAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAG......................................................................................................................................................................................................................................................................................................................GATCTTGCAAAGGCTTTTGTTCANGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296545" ref_strand="+" ref_description="SGN-E296545 [cLET-19-D8]">
      <seq>aaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttgtgtctgcttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10616" stop="12184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10916" g_stop="11044" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="264" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11884" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="302" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E296545" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10916" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCA</genome_strand>
        <mrna_strand>AAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTGTGTCTGCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729774" ref_strand="+" ref_description="SGN-E729774 [LA22AC07]">
      <seq>aaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10617" stop="11908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10917" g_stop="11044" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11608" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="175" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E729774" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>175</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10917" e_stop="11044"/>
          <exon e_start="11562" e_stop="11608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGC</genome_strand>
        <mrna_strand>AAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367135" ref_strand="+" ref_description="SGN-E367135 [cLPT-5-J7]">
      <seq>aaaaaagcaccaaatcaacatcaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcctgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgtttctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcagaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcggagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10618" stop="12893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10918" g_stop="11044" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="262" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="349" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="440" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="495" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="556" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E367135" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10918" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG</genome_strand>
        <mrna_strand>AAAAAAGCACCAAATCAACATCAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCCTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTTCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCAGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCGGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323246" ref_strand="+" ref_description="SGN-E323246 [cTOB-28-O10]">
      <seq>aaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaagttgatgcaggtgacccgaagagtatgcataaacgaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10619" stop="13414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10919" g_stop="11044" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="261" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="348" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="439" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="494" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="555" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13025" g_stop="13114" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="645" r_length="90" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E323246" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10919" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTA</genome_strand>
        <mrna_strand>AAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTATGCATAAACGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287510" ref_strand="+" ref_description="SGN-E287510 [cLES-9-K24]">
      <seq>aaaaggctccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttattccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagtcacagcctccagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatctagactacttgtgaaagaaggccacccggatacatctattcacatgatgaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgattactcctccaagttattgcacttgaagggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10619" stop="12251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10919" g_stop="11044" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="261" r_length="135" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="349" r_length="88" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.502" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12046" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="368" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E287510" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10919" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTAC-TCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTG</genome_strand>
        <mrna_strand>AAAAGGCTCCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTATTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTCACAGCCTCCAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCTAGACTACTTGTGAAAGAAGGCCACCCG......................................................................................................................................................GATACATCTATTCACATGATGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTACTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295525" ref_strand="+" ref_description="SGN-E295525 [cLET-23-D7]">
      <seq>aaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10620" stop="12889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10920" g_stop="11044" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="260" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="347" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="438" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="493" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12589" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="552" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E295525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10920" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTG</genome_strand>
        <mrna_strand>AAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294047" ref_strand="+" ref_description="SGN-E294047 [cLET-13-E9]">
      <seq>aaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10620" stop="12879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10920" g_stop="11044" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="260" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="347" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="438" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="493" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12579" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="542" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E294047" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10920" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTA</genome_strand>
        <mrna_strand>AAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291344" ref_strand="+" ref_description="SGN-E291344 [cLET-2-B15]">
      <seq>gcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgcgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10624" stop="12880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10924" g_stop="11044" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="256" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="343" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="434" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="489" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12580" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="539" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E291344" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10924" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTAC</genome_strand>
        <mrna_strand>GCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGCGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737297" ref_strand="+" ref_description="SGN-E737297 [LC09AG09]">
      <seq>accaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaactacaatcctgttgaagagtggttcttccaccgattgaaggctggtcgcccaattccgattcctaactcagggatgcaaataactcaacttggacatgtgaaggatcttgcaaaggcttttgttcaggttcttggaaatgagaaagcaagcaagcaagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10626" stop="13914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10926" g_stop="11044" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="254" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="341" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="432" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="487" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="548" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13025" g_stop="13246" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="770" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="13247" i_stop="13556" i_length="310">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="13557" g_stop="13614" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="771" r_stop="828" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E737297" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10926" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13246"/>
          <exon e_start="13557" e_stop="13614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAGGTTAGTCAGCACATATTAAAAGAGTAGTTCACATCTTTCTATTGTAAACTTCAAGCAATGCTATCGCCCTAGAAGTTCAACGGAGATGTCTTTGCTTAGGTCCTATACATATCCAATCTTTGCAAGTGGCTTCCATTTAGTAAAAACCAGGAAATATGTCTTTTCAAATAGGAGCAACGTACTCCTTAGTTCACTTTCAGGCAATACTTCAGTTCGACAGCATTATAACATAATGAGCTTAGGAATCGTCTAAAGAATCACAGCCTTGCATCTATGTGATAATATTTTTGCTTTCGGTTGATATTGGCAGGATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTAT</genome_strand>
        <mrna_strand>ACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAG......................................................................................................................................................................................................................................................................................................................GATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268330" ref_strand="+" ref_description="SGN-E268330 [cLEI-13-E21]">
      <seq>ccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaactacaatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11274" stop="13454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11574" g_stop="11696" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="210" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="301" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="356" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="417" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13025" g_stop="13154" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="547" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E268330" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11574" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTG</genome_strand>
        <mrna_strand>CCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366473" ref_strand="+" ref_description="SGN-E366473 [cLPT-13-I7]">
      <seq>gtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgtttctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcagaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcggagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtaggcataaaggaaagcttgagacagagagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaactacaatcctgttgaagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11314" stop="13463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11614" g_stop="11696" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="170" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="261" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="316" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="377" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13025" g_stop="13163" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="516" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E366473" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11614" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGT</genome_strand>
        <mrna_strand>GTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTTCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCAGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCGGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAGAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297834" ref_strand="+" ref_description="SGN-E297834 [cLET-38-D22]">
      <seq>aaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11317" stop="13344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11617" g_stop="11696" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="167" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="258" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="313" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="374" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13025" g_stop="13044" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="394" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E297834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11617" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAA</genome_strand>
        <mrna_strand>AAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288916" ref_strand="+" ref_description="SGN-E288916 [cLES-17-I17]">
      <seq>ggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaactacaatcctgttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11544" stop="13460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11688" g_stop="11696" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="96" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="187" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="242" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="303" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13025" g_stop="13160" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="439" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E288916" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11688" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAG</genome_strand>
        <mrna_strand>GGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280937" ref_strand="+" ref_description="SGN-E280937 [cLER-7-C3]">
      <seq>aattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11587" stop="13446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11887" g_stop="11933" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="138" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="193" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="254" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13025" g_stop="13146" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="376" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E280937" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11887" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTA</genome_strand>
        <mrna_strand>AATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735430" ref_strand="+" ref_description="SGN-E735430 [LC01CC04]">
      <seq>cagtttttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaactacaatcctgttgaagagtggttcttccaccgattgaaggctggtcgcccaattccgattcctaactcagggatgcaaataactcaacttggacatgtgaaggatcttgcaaaggcttttgttcaggttcttggaaatgagaaagcaagcaagcaagtatttaacatatccggagagaaatatgtcacatttgatggattagctaaggcttgcgccaaggctggtggtttcccggaacccgagcttgttcattacaaccctaaggagttcgattttggcaagaagaaagcattcccattccgtgaccagcatttctttacatccatcgagaagtcaaaggctgagctaggatggaaacctgattttgatctggtggaaggtcttacagactcttacaacctagatttcggacgaggaacattcaggaaagcagctgatttctctacagatgatatgattcttgaaaagaaactagttccccagagctaatatttctgtttttcatttcattagttttggtttcttgctttttctccaagaagttcacaagtcattagtggcaaactatttgaattttccctgtatattancttcactaaatgaaatgaatgacaactattgtctttttgccatcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11775" stop="14824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12075" g_stop="12118" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="99" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="160" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13025" g_stop="13246" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="382" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13247" i_stop="13556" i_length="310">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13557" g_stop="13673" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="499" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13674" i_stop="13758" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13759" g_stop="13848" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="589" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13849" i_stop="14193" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14194" g_stop="14523" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="917" r_length="328" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="918" polyA_stop="927"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E735430" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>919</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12075" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13246"/>
          <exon e_start="13557" e_stop="13673"/>
          <exon e_start="13759" e_stop="13848"/>
          <exon e_start="14194" e_stop="14523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAGGTTAGTCAGCACATATTAAAAGAGTAGTTCACATCTTTCTATTGTAAACTTCAAGCAATGCTATCGCCCTAGAAGTTCAACGGAGATGTCTTTGCTTAGGTCCTATACATATCCAATCTTTGCAAGTGGCTTCCATTTAGTAAAAACCAGGAAATATGTCTTTTCAAATAGGAGCAACGTACTCCTTAGTTCACTTTCAGGCAATACTTCAGTTCGACAGCATTATAACATAATGAGCTTAGGAATCGTCTAAAGAATCACAGCCTTGCATCTATGTGATAATATTTTTGCTTTCGGTTGATATTGGCAGGATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAGGTAATTTTTTTTGGTCAATGTTAGCTTATATTGCTTGTAAAAGCTTTGAATGATATACAATTGACTCTCAATATTCCTAATCCAGGCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAGGTAAATATTAGTGTGTTGATTTCAGTTGTTTACCATTCATATTGAAATTCGAGACATTCTTTATCAAAGAATCAAATGATATGATCAAACTAAATGAATCATCAGTGAAGATTCACAACATGTTCACCGCCTCTTATCCTAGTCCCTTCCTAAAACACACATCAGTATGCTCACTAAAATTAACACACATTTTTGTACAATCAATCGTAGTCCAAACGAAATACTACAAGAAATATGGTTTATTTCCTCTGTTGAAGTTGTTAGCTTGTCTGTTTAATATCGGATTCTTGTCCAACACTAGTCTATCTATGTCTTCTCGTTGGTTTTAACATCGAATTTCTACAGCATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAAC</genome_strand>
        <mrna_strand>CAGTTTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAG......................................................................................................................................................................................................................................................................................................................GATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAG.....................................................................................GCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................CATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTG-AATTTTCCCTGTATATTANCTTCACT-AAATGAAATGAATGACAACTATTGTCTTTTTGCCATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707273" ref_strand="+" ref_description="SGN-E707273 [FA32CB10]">
      <seq>ctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaactacaatcctgttgaagagtggttcttccaccgattgaaggctggtcgcccaattccgattcctaactcagggatgcaaataactcaacttggacatgtgaaggatcttgcaaaggcttttgttcaggttcttggaaatgagaaagcaagcaagcaagtatttaacatatccggagagaaatatgtcacatttgatggattagctaaggcttgcgccaaggctggtggtttcccggaacccgagcttgttcattacaaccctaaggagttcgattttggcaagaagaaagcattcccattccgtgaccagcatttctttacatccatcgagaagtcaaaggctgagctaggatggaaacctgattttgatctggtggaaggtcttacagactcttacaacctagatttcggacgaggaacattcaggaaagcagctgatttctctacagatgatatgattcttgaaaagaaactagttccccagagctaatatttctgtttttcatttcattagttttggtttcttgctttttctccaagaagttcacaagtcattagtggcaaactatttgaaatttttcttgtatattaacttcactaaaatgaaatgaatgacaactattgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11783" stop="14810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12083" g_stop="12118" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="91" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="152" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13025" g_stop="13246" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="374" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13247" i_stop="13556" i_length="310">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13557" g_stop="13673" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="491" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13674" i_stop="13758" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13759" g_stop="13848" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="581" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13849" i_stop="14193" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14194" g_stop="14510" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="898" r_length="317" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E707273" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>898</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12083" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13246"/>
          <exon e_start="13557" e_stop="13673"/>
          <exon e_start="13759" e_stop="13848"/>
          <exon e_start="14194" e_stop="14510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAGGTTAGTCAGCACATATTAAAAGAGTAGTTCACATCTTTCTATTGTAAACTTCAAGCAATGCTATCGCCCTAGAAGTTCAACGGAGATGTCTTTGCTTAGGTCCTATACATATCCAATCTTTGCAAGTGGCTTCCATTTAGTAAAAACCAGGAAATATGTCTTTTCAAATAGGAGCAACGTACTCCTTAGTTCACTTTCAGGCAATACTTCAGTTCGACAGCATTATAACATAATGAGCTTAGGAATCGTCTAAAGAATCACAGCCTTGCATCTATGTGATAATATTTTTGCTTTCGGTTGATATTGGCAGGATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAGGTAATTTTTTTTGGTCAATGTTAGCTTATATTGCTTGTAAAAGCTTTGAATGATATACAATTGACTCTCAATATTCCTAATCCAGGCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAGGTAAATATTAGTGTGTTGATTTCAGTTGTTTACCATTCATATTGAAATTCGAGACATTCTTTATCAAAGAATCAAATGATATGATCAAACTAAATGAATCATCAGTGAAGATTCACAACATGTTCACCGCCTCTTATCCTAGTCCCTTCCTAAAACACACATCAGTATGCTCACTAAAATTAACACACATTTTTGTACAATCAATCGTAGTCCAAACGAAATACTACAAGAAATATGGTTTATTTCCTCTGTTGAAGTTGTTAGCTTGTCTGTTTAATATCGGATTCTTGTCCAACACTAGTCTATCTATGTCTTCTCGTTGGTTTTAACATCGAATTTCTACAGCATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCA</genome_strand>
        <mrna_strand>CTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAG......................................................................................................................................................................................................................................................................................................................GATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAG.....................................................................................GCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................CATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTTCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734776" ref_strand="+" ref_description="SGN-E734776 [LB13CC05]">
      <seq>atgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaactacaatcctgttgaagagtggttcttccaccgattgaaggctggtcgcccaattccgattcctaactcagggatgcaaataactcaacttggacatgtgaaggatcttgcaaaggcttttgttcaggttcttggaaatgagaaagcaagcaagcaagtatttaacatatccggagagaaatatgtcacatttgatggattagctaaggcttgcgccaaggctggtggtttcccggaacccgagcttgttcattacaaccctaaggagttcgattttggcaagaagaaagcattcccattccgtgaccagcatttctttacatccatcgagaagtcaaaggctgagctaggatggaaacctgattttgatctggtggaaggtcttacagactcttacaacctagatttcggacgaggaacattcaggaaagcagctgatttctctacagatgatatgattcttgaaaagaaactagttccccagagctaatatttctgtttttcatttcattagttttggtttcttgctttttctccaagaagttcacaagtcattagtggcaaactatttgaaattttccttgtatattaacttcactaaaatgaaatgaaatgacactattgtcattttgccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11795" stop="14824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12095" g_stop="12118" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="79" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="140" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13025" g_stop="13246" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="362" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13247" i_stop="13556" i_length="310">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13557" g_stop="13673" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="479" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13674" i_stop="13758" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13759" g_stop="13848" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="569" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13849" i_stop="14193" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14194" g_stop="14517" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="893" r_length="324" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="894" polyA_stop="908"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E734776" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12095" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13246"/>
          <exon e_start="13557" e_stop="13673"/>
          <exon e_start="13759" e_stop="13848"/>
          <exon e_start="14194" e_stop="14517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAGGTTAGTCAGCACATATTAAAAGAGTAGTTCACATCTTTCTATTGTAAACTTCAAGCAATGCTATCGCCCTAGAAGTTCAACGGAGATGTCTTTGCTTAGGTCCTATACATATCCAATCTTTGCAAGTGGCTTCCATTTAGTAAAAACCAGGAAATATGTCTTTTCAAATAGGAGCAACGTACTCCTTAGTTCACTTTCAGGCAATACTTCAGTTCGACAGCATTATAACATAATGAGCTTAGGAATCGTCTAAAGAATCACAGCCTTGCATCTATGTGATAATATTTTTGCTTTCGGTTGATATTGGCAGGATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAGGTAATTTTTTTTGGTCAATGTTAGCTTATATTGCTTGTAAAAGCTTTGAATGATATACAATTGACTCTCAATATTCCTAATCCAGGCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAGGTAAATATTAGTGTGTTGATTTCAGTTGTTTACCATTCATATTGAAATTCGAGACATTCTTTATCAAAGAATCAAATGATATGATCAAACTAAATGAATCATCAGTGAAGATTCACAACATGTTCACCGCCTCTTATCCTAGTCCCTTCCTAAAACACACATCAGTATGCTCACTAAAATTAACACACATTTTTGTACAATCAATCGTAGTCCAAACGAAATACTACAAGAAATATGGTTTATTTCCTCTGTTGAAGTTGTTAGCTTGTCTGTTTAATATCGGATTCTTGTCCAACACTAGTCTATCTATGTCTTCTCGTTGGTTTTAACATCGAATTTCTACAGCATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATG-AATGACAACTATTGTCATTTTGCC</genome_strand>
        <mrna_strand>ATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAG......................................................................................................................................................................................................................................................................................................................GATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAG.....................................................................................GCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................CATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAAATGAC-ACTATTGTCATTTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295086" ref_strand="+" ref_description="SGN-E295086 [cLET-40-K7]">
      <seq>gttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaagcctgtttatatttatgggccacttaactacaatcctgttgaagagtggttcttccaccgattgaaagctggtcgcccaattccgattcctaactcaaggatgcaaataactcaacttggacatgtgaaggatcttgcaaaggcttttgttcaagttcttggaaatgagaaagcaagcaagcaagtatttaacatatccggagagaaatatgtcacatttgatggatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11800" stop="13955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12100" g_stop="12118" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="74" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="135" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13025" g_stop="13246" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="357" r_length="222" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13247" i_stop="13556" i_length="310">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13557" g_stop="13655" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="456" r_length="99" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E295086" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12100" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13246"/>
          <exon e_start="13557" e_stop="13655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAGGTTAGTCAGCACATATTAAAAGAGTAGTTCACATCTTTCTATTGTAAACTTCAAGCAATGCTATCGCCCTAGAAGTTCAACGGAGATGTCTTTGCTTAGGTCCTATACATATCCAATCTTTGCAAGTGGCTTCCATTTAGTAAAAACCAGGAAATATGTCTTTTCAAATAGGAGCAACGTACTCCTTAGTTCACTTTCAGGCAATACTTCAGTTCGACAGCATTATAACATAATGAGCTTAGGAATCGTCTAAAGAATCACAGCCTTGCATCTATGTGATAATATTTTTGCTTTCGGTTGATATTGGCAGGATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTA</genome_strand>
        <mrna_strand>GTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAAGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAAGCTGGTCGCCCAATTCCGATTCCTAACTCAAGGATGCAAATAACTCAACTTGGACATGTGAAG......................................................................................................................................................................................................................................................................................................................GATCTTGCAAAGGCTTTTGTTCAAGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283841" ref_strand="+" ref_description="SGN-E283841 [cLES-1-P2]">
      <seq>gtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaactacaatcctgttgaagagtggttcttccaccgattgaaggctggtcgcccaattccgattcctaactcagggatgcaaataactcaacttggacatgtgaaggatcttgcaaaggcttttgttcaggttcttggaaatgagaaagcaagcaagcaagtatttaacatatccggagagaaatatgtcacatttgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11803" stop="13952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12103" g_stop="12118" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="71" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="132" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13025" g_stop="13246" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="354" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13247" i_stop="13556" i_length="310">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13557" g_stop="13652" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="450" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E283841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12103" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13246"/>
          <exon e_start="13557" e_stop="13652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAGGTTAGTCAGCACATATTAAAAGAGTAGTTCACATCTTTCTATTGTAAACTTCAAGCAATGCTATCGCCCTAGAAGTTCAACGGAGATGTCTTTGCTTAGGTCCTATACATATCCAATCTTTGCAAGTGGCTTCCATTTAGTAAAAACCAGGAAATATGTCTTTTCAAATAGGAGCAACGTACTCCTTAGTTCACTTTCAGGCAATACTTCAGTTCGACAGCATTATAACATAATGAGCTTAGGAATCGTCTAAAGAATCACAGCCTTGCATCTATGTGATAATATTTTTGCTTTCGGTTGATATTGGCAGGATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGA</genome_strand>
        <mrna_strand>GTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAG......................................................................................................................................................................................................................................................................................................................GATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286518" ref_strand="+" ref_description="SGN-E286518 [cLES-12-F21]">
      <seq>ggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaactacaatcctgttgaagagtggttcttccaccgattgaaggctggtcgcccaattccgattcctaactcagggatgcaaataactcaacttggacatgtgaaggatcttgcaaaggcttttgttcaggttcttggaaatgagaaagcaagcaagcaagtatttaacatatccggagagaaatatgtcacatttgatggattagctaaggcttgcgccaaggctggtggtttcccggaacccgagcttgttcattacaaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11962" stop="14100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12262" g_stop="12317" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="117" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13025" g_stop="13246" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="339" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13247" i_stop="13556" i_length="310">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13557" g_stop="13673" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="456" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13674" i_stop="13758" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13759" g_stop="13800" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="498" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E286518" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12262" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13246"/>
          <exon e_start="13557" e_stop="13673"/>
          <exon e_start="13759" e_stop="13800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAGGTTAGTCAGCACATATTAAAAGAGTAGTTCACATCTTTCTATTGTAAACTTCAAGCAATGCTATCGCCCTAGAAGTTCAACGGAGATGTCTTTGCTTAGGTCCTATACATATCCAATCTTTGCAAGTGGCTTCCATTTAGTAAAAACCAGGAAATATGTCTTTTCAAATAGGAGCAACGTACTCCTTAGTTCACTTTCAGGCAATACTTCAGTTCGACAGCATTATAACATAATGAGCTTAGGAATCGTCTAAAGAATCACAGCCTTGCATCTATGTGATAATATTTTTGCTTTCGGTTGATATTGGCAGGATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAGGTAATTTTTTTTGGTCAATGTTAGCTTATATTGCTTGTAAAAGCTTTGAATGATATACAATTGACTCTCAATATTCCTAATCCAGGCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCT</genome_strand>
        <mrna_strand>GGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAG......................................................................................................................................................................................................................................................................................................................GATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAG.....................................................................................GCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285948" ref_strand="+" ref_description="SGN-E285948 [cLES-13-M16]">
      <seq>ggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtaggcataaaggaaagcttgagacagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11962" stop="13375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12262" g_stop="12317" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="117" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13025" g_stop="13075" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="168" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E285948" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>168</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12262" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAA</genome_strand>
        <mrna_strand>GGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321122" ref_strand="+" ref_description="SGN-E321122 [cTOB-13-G12]">
      <seq>tgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgaagcaagtgacccgaagagtaagcataaaggagagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatctatgggccacttaactacaatcctgttgaaaagtggttgttccaccgattgaaggctggtcgcccaattccgattcctaactcaaggatgcaaataactcaacttggacatgtgaaggatattgctaaggcttttgttcaggttcttggaaatgacaaagcaagcaagctagtatttaacatatccggagagaaatatgtcacatttgatggattagctaaggcttgcgccaaggctggtggtttgccggaacccgagcttgttcattacaaccctaaggagttcgattttggcaagaagaaagcattaccattccgtgaccagcatttatttacatccatcgagaagtcaaacgctgagctaggatggaaacctgattatgatctggtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12241" stop="14561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12541" g_stop="12591" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13025" g_stop="13246" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="273" r_length="222" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13247" i_stop="13556" i_length="310">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13557" g_stop="13673" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="390" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13674" i_stop="13758" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13759" g_stop="13848" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="480" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13849" i_stop="14193" i_length="345">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.881" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14194" g_stop="14261" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="548" r_length="68" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E321122" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12541" e_stop="12591"/>
          <exon e_start="13025" e_stop="13246"/>
          <exon e_start="13557" e_stop="13673"/>
          <exon e_start="13759" e_stop="13848"/>
          <exon e_start="14194" e_stop="14261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAGGTTAGTCAGCACATATTAAAAGAGTAGTTCACATCTTTCTATTGTAAACTTCAAGCAATGCTATCGCCCTAGAAGTTCAACGGAGATGTCTTTGCTTAGGTCCTATACATATCCAATCTTTGCAAGTGGCTTCCATTTAGTAAAAACCAGGAAATATGTCTTTTCAAATAGGAGCAACGTACTCCTTAGTTCACTTTCAGGCAATACTTCAGTTCGACAGCATTATAACATAATGAGCTTAGGAATCGTCTAAAGAATCACAGCCTTGCATCTATGTGATAATATTTTTGCTTTCGGTTGATATTGGCAGGATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAGGTAATTTTTTTTGGTCAATGTTAGCTTATATTGCTTGTAAAAGCTTTGAATGATATACAATTGACTCTCAATATTCCTAATCCAGGCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAGGTAAATATTAGTGTGTTGATTTCAGTTGTTTACCATTCATATTGAAATTCGAGACATTCTTTATCAAAGAATCAAATGATATGATCAAACTAAATGAATCATCAGTGAAGATTCACAACATGTTCACCGCCTCTTATCCTAGTCCCTTCCTAAAACACACATCAGTATGCTCACTAAAATTAACACACATTTTTGTACAATCAATCGTAGTCCAAACGAAATACTACAAGAAATATGGTTTATTTCCTCTGTTGAAGTTGTTAGCTTGTCTGTTTAATATCGGATTCTTGTCCAACACTAGTCTATCTATGTCTTCTCGTTGGTTTTAACATCGAATTTCTACAGCATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGA</genome_strand>
        <mrna_strand>TGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAGTGACCCGAAGAGTAAGCATAAAGGAGAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATCTATGGGCCACTTAACTACAATCCTGTTGAAAAGTGGTTGTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAAGGATGCAAATAACTCAACTTGGACATGTGAAG......................................................................................................................................................................................................................................................................................................................GATATTGCTAAGGCTTTTGTTCAGGTTCTTGGAAATGACAAAGCAAGCAAGCTAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAG.....................................................................................GCTGGTGGTTTGCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTACCATTCCGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................CATTTATTTACATCCATCGAGAAGTCAAACGCTGAGCTAGGATGGAAACCTGATTATGATCTGGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295227" ref_strand="+" ref_description="SGN-E295227 [cLET-20-A18]">
      <seq>tcagctggtgtataccttaattctgattatttaccacatttggaggttgaggcaggcgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaactacaatcctgttgaagagtggttcttccaccgattgaaggctggtcgcccaattccgattcctaactcagggatgcaaataactcaacttggacatgtgaaggatcttgcaaaggcttttgttcaggttcttggaaatgagaaagcaagcaagcaagtatttaacatatccggagagaaatatgtcacatttgatggattagctaaggcttgcgccaaggctggtggtttcccggaacccgagcttgttcattacaaccctaaggagttcgattttggcaagaagaaagcattcccattccgtgaccagcatttctttacatccatcgagaagtcaaaggctgagctaggatggaaacctgattttgatctggtggaaggtcttacagactcttacaacctagatttcggacgaggaacattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12247" stop="14608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12547" g_stop="12591" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="0.93"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13025" g_stop="13246" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="267" r_length="222" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13247" i_stop="13556" i_length="310">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13557" g_stop="13673" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="384" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13674" i_stop="13758" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13759" g_stop="13848" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="474" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13849" i_stop="14193" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14194" g_stop="14308" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="589" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E295227" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12547" e_stop="12591"/>
          <exon e_start="13025" e_stop="13246"/>
          <exon e_start="13557" e_stop="13673"/>
          <exon e_start="13759" e_stop="13848"/>
          <exon e_start="14194" e_stop="14308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAGGTTAGTCAGCACATATTAAAAGAGTAGTTCACATCTTTCTATTGTAAACTTCAAGCAATGCTATCGCCCTAGAAGTTCAACGGAGATGTCTTTGCTTAGGTCCTATACATATCCAATCTTTGCAAGTGGCTTCCATTTAGTAAAAACCAGGAAATATGTCTTTTCAAATAGGAGCAACGTACTCCTTAGTTCACTTTCAGGCAATACTTCAGTTCGACAGCATTATAACATAATGAGCTTAGGAATCGTCTAAAGAATCACAGCCTTGCATCTATGTGATAATATTTTTGCTTTCGGTTGATATTGGCAGGATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAGGTAATTTTTTTTGGTCAATGTTAGCTTATATTGCTTGTAAAAGCTTTGAATGATATACAATTGACTCTCAATATTCCTAATCCAGGCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAGGTAAATATTAGTGTGTTGATTTCAGTTGTTTACCATTCATATTGAAATTCGAGACATTCTTTATCAAAGAATCAAATGATATGATCAAACTAAATGAATCATCAGTGAAGATTCACAACATGTTCACCGCCTCTTATCCTAGTCCCTTCCTAAAACACACATCAGTATGCTCACTAAAATTAACACACATTTTTGTACAATCAATCGTAGTCCAAACGAAATACTACAAGAAATATGGTTTATTTCCTCTGTTGAAGTTGTTAGCTTGTCTGTTTAATATCGGATTCTTGTCCAACACTAGTCTATCTATGTCTTCTCGTTGGTTTTAACATCGAATTTCTACAGCATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCA</genome_strand>
        <mrna_strand>TCAGCTGGTGTATACCTTAATTCTGATTATTTACCACATTTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGCAGGCGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAG......................................................................................................................................................................................................................................................................................................................GATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAG.....................................................................................GCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................CATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740270" ref_strand="+" ref_description="SGN-E740270 [LC20DB02]">
      <seq>cattttgaggttgatgcaggtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaactacaatcctgttgaagagtggttcttccaccgattgaaggctggtcgcccaattccgattcctaactcagggatgcaaataactcaacttggacatgtgaaggatcttgcaaaggcttttgttcaggttcttggaaatgagaaagcaagcaagcaagtatttaacatatccggagagaaatatgtcacatttgatggattagctaaggcttgcgccaaggctggtggtttcccggaacccgagcttgttcattacaaccctaaggagttcgattttggcaagaagaaagcattcccattccgtgaccagcatttctttacatccatcgagaagtcaaaggctgagctaggatggaaacctgattttgatctggtggaaggtcttacagactcttacaacctagatttcggacgaggaacattcaggaaagcagctgatttctctacagatgatatgattcttgaaaagaaactagttccccagagctaatatttctgtttttcatttcattagttttggtttcttgctttttctccaagaagttcacaagtcattagtggcaaactatttgaaattttccttgtatattaacttcactaaaatgaaatgaatgacaactattgtcattttgcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12723" stop="14824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13025" g_stop="13246" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="231" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13247" i_stop="13556" i_length="310">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13557" g_stop="13673" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="348" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13674" i_stop="13758" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13759" g_stop="13848" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="438" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13849" i_stop="14193" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14194" g_stop="14530" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="775" r_length="337" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E740270" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13025" e_stop="13246"/>
          <exon e_start="13557" e_stop="13673"/>
          <exon e_start="13759" e_stop="13848"/>
          <exon e_start="14194" e_stop="14530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAGGTTAGTCAGCACATATTAAAAGAGTAGTTCACATCTTTCTATTGTAAACTTCAAGCAATGCTATCGCCCTAGAAGTTCAACGGAGATGTCTTTGCTTAGGTCCTATACATATCCAATCTTTGCAAGTGGCTTCCATTTAGTAAAAACCAGGAAATATGTCTTTTCAAATAGGAGCAACGTACTCCTTAGTTCACTTTCAGGCAATACTTCAGTTCGACAGCATTATAACATAATGAGCTTAGGAATCGTCTAAAGAATCACAGCCTTGCATCTATGTGATAATATTTTTGCTTTCGGTTGATATTGGCAGGATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAGGTAATTTTTTTTGGTCAATGTTAGCTTATATTGCTTGTAAAAGCTTTGAATGATATACAATTGACTCTCAATATTCCTAATCCAGGCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAGGTAAATATTAGTGTGTTGATTTCAGTTGTTTACCATTCATATTGAAATTCGAGACATTCTTTATCAAAGAATCAAATGATATGATCAAACTAAATGAATCATCAGTGAAGATTCACAACATGTTCACCGCCTCTTATCCTAGTCCCTTCCTAAAACACACATCAGTATGCTCACTAAAATTAACACACATTTTTGTACAATCAATCGTAGTCCAAACGAAATACTACAAGAAATATGGTTTATTTCCTCTGTTGAAGTTGTTAGCTTGTCTGTTTAATATCGGATTCTTGTCCAACACTAGTCTATCTATGTCTTCTCGTTGGTTTTAACATCGAATTTCTACAGCATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAACATTTTTT</genome_strand>
        <mrna_strand>GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAG......................................................................................................................................................................................................................................................................................................................GATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAG.....................................................................................GCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................CATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713955" ref_strand="+" ref_description="SGN-E713955 [FB10AE05]">
      <seq>gaggggtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaactacaatcctgttgaagagtggttcttccaccgattgaaggctggtcgcccaattccgattcctaactcagggatgcaaataactcaacttggacatgtgaaggatcttgcaaaggcttttgttcaggttcttggaaatgagaaagcaagcaagcaagtatttaacatatccggagagaaatatgtcacatttgatggattagctaaggcttgcgccaaggctggtggtttcccggaacccgagcttgttcattacaaccctaaggagttcgattttggcaagaagaaagcattcccattccgtgaccagcatttctttacatccatcgagaagtcaaaggctgagctaggatggaaacctgattttgatctggtggaaggtcttacagactcttacaacctagatttcggacgaggaacattcaggaaagcagctgatttctctacagatgatatgattcttgaaaagaaactagttccccagagctaatatttctgtttttcatttcattagttttggtttcttgctttttctccaagaagttcacaagtcattagtggcaaactatttgaaattttccttgtatattaacttcactaaaatgaaatgaatgacaactattgtcattttgccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12734" stop="14824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13028" g_stop="13246" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13247" i_stop="13556" i_length="310">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13557" g_stop="13673" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="334" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13674" i_stop="13758" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13759" g_stop="13848" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="424" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13849" i_stop="14193" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14194" g_stop="14517" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="748" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="749" polyA_stop="762"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E713955" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13028" e_stop="13246"/>
          <exon e_start="13557" e_stop="13673"/>
          <exon e_start="13759" e_stop="13848"/>
          <exon e_start="14194" e_stop="14517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAGGTTAGTCAGCACATATTAAAAGAGTAGTTCACATCTTTCTATTGTAAACTTCAAGCAATGCTATCGCCCTAGAAGTTCAACGGAGATGTCTTTGCTTAGGTCCTATACATATCCAATCTTTGCAAGTGGCTTCCATTTAGTAAAAACCAGGAAATATGTCTTTTCAAATAGGAGCAACGTACTCCTTAGTTCACTTTCAGGCAATACTTCAGTTCGACAGCATTATAACATAATGAGCTTAGGAATCGTCTAAAGAATCACAGCCTTGCATCTATGTGATAATATTTTTGCTTTCGGTTGATATTGGCAGGATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAGGTAATTTTTTTTGGTCAATGTTAGCTTATATTGCTTGTAAAAGCTTTGAATGATATACAATTGACTCTCAATATTCCTAATCCAGGCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAGGTAAATATTAGTGTGTTGATTTCAGTTGTTTACCATTCATATTGAAATTCGAGACATTCTTTATCAAAGAATCAAATGATATGATCAAACTAAATGAATCATCAGTGAAGATTCACAACATGTTCACCGCCTCTTATCCTAGTCCCTTCCTAAAACACACATCAGTATGCTCACTAAAATTAACACACATTTTTGTACAATCAATCGTAGTCCAAACGAAATACTACAAGAAATATGGTTTATTTCCTCTGTTGAAGTTGTTAGCTTGTCTGTTTAATATCGGATTCTTGTCCAACACTAGTCTATCTATGTCTTCTCGTTGGTTTTAACATCGAATTTCTACAGCATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCC</genome_strand>
        <mrna_strand>GA-G-GGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAG......................................................................................................................................................................................................................................................................................................................GATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAG.....................................................................................GCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................CATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299196" ref_strand="+" ref_description="SGN-E299196 [cLET-42-P22]">
      <seq>gagatgtttattggacttctctaaggcctgtttatatttatgggccacttaactacaatcctgttgaagagtggttcttccaccgattgaaggctggtcgcccaattccgattcctaactcagggatgcaaataactcaacttggacatgtgaaggatcttgcaaaggcttttgttcaggttcttggaaatgagaaagcaagcaagcaagtatttaacatatccggagagaaatatttcacatttgatggattaactaaggcttgcgccaaggctggtggtttcccggaacccgagcttgttcattacaaccctaaggagttcgattttggcaagaagaaagcattcccattccgtgaccagcatttctttacatccatcgagaagtcaaaggctgagctaggatggaaacctgattttgatctggtggaaggtcttacagactcttacaacctagatttcggacgaggaacattcaggaaagcagctgatttctctacagatgatatgattcttgaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12792" stop="14652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13092" g_stop="13246" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13247" i_stop="13556" i_length="310">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13557" g_stop="13673" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="272" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13674" i_stop="13758" i_length="85">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13759" g_stop="13848" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="362" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13849" i_stop="14193" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14194" g_stop="14352" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="521" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E299196" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13092" e_stop="13246"/>
          <exon e_start="13557" e_stop="13673"/>
          <exon e_start="13759" e_stop="13848"/>
          <exon e_start="14194" e_stop="14352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAGGTTAGTCAGCACATATTAAAAGAGTAGTTCACATCTTTCTATTGTAAACTTCAAGCAATGCTATCGCCCTAGAAGTTCAACGGAGATGTCTTTGCTTAGGTCCTATACATATCCAATCTTTGCAAGTGGCTTCCATTTAGTAAAAACCAGGAAATATGTCTTTTCAAATAGGAGCAACGTACTCCTTAGTTCACTTTCAGGCAATACTTCAGTTCGACAGCATTATAACATAATGAGCTTAGGAATCGTCTAAAGAATCACAGCCTTGCATCTATGTGATAATATTTTTGCTTTCGGTTGATATTGGCAGGATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAGGTAATTTTTTTTGGTCAATGTTAGCTTATATTGCTTGTAAAAGCTTTGAATGATATACAATTGACTCTCAATATTCCTAATCCAGGCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAGGTAAATATTAGTGTGTTGATTTCAGTTGTTTACCATTCATATTGAAATTCGAGACATTCTTTATCAAAGAATCAAATGATATGATCAAACTAAATGAATCATCAGTGAAGATTCACAACATGTTCACCGCCTCTTATCCTAGTCCCTTCCTAAAACACACATCAGTATGCTCACTAAAATTAACACACATTTTTGTACAATCAATCGTAGTCCAAACGAAATACTACAAGAAATATGGTTTATTTCCTCTGTTGAAGTTGTTAGCTTGTCTGTTTAATATCGGATTCTTGTCCAACACTAGTCTATCTATGTCTTCTCGTTGGTTTTAACATCGAATTTCTACAGCATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAG</genome_strand>
        <mrna_strand>GAGATGTTTATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAG......................................................................................................................................................................................................................................................................................................................GATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATTTCACATTTGATGGATTAACTAAGGCTTGCGCCAAG.....................................................................................GCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................CATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373798" ref_strand="+" ref_description="SGN-E373798 [TUS-31-M12](-)">
      <seq>aaggcctgtttatatttatgggccacttaactacaatcctgttgaagagtggttcttccaccgattgaaggctggtcgcccaattccgattcctaactcagggatgcaaataactcaacttggacatgtgaaggatcttgcaaaggcttttgttcaggttcttggaaatgagaaagcaagcaagcaagtatttaacatatccggagagaaatatgtcacatttgatggattagctaaggcttgcgccaaggctggtggtttcccggaacccgagcttgttcattacaaccctaaggagttcgattttggcaagaagaaagcattcccattccgtgaccagcatttctttacatccatcgagaagtcaaaggctgagctaggatggaaacctgattttgatctggtggaaggtcttacagactcttacaacctagatttcggacgaggaacattcaggaaagcagctgatttctctacagatgatatgattcttgaaaagaaactagttccccagagctaatatttctgtttttcatttcattagttttggtttcttgctttttctccaagaagttcacaagtcattagtggcaaactatttgaaattttccttgtatattaacttcactaaaatgaaatgaatgacaactattgtcattttgccatcaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12814" stop="14824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13114" g_stop="13246" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13247" i_stop="13556" i_length="310">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13557" g_stop="13673" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="250" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13674" i_stop="13758" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13759" g_stop="13848" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="340" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13849" i_stop="14193" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14194" g_stop="14523" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="670" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="671" polyA_stop="684"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E373798" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13114" e_stop="13246"/>
          <exon e_start="13557" e_stop="13673"/>
          <exon e_start="13759" e_stop="13848"/>
          <exon e_start="14194" e_stop="14523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAGGTTAGTCAGCACATATTAAAAGAGTAGTTCACATCTTTCTATTGTAAACTTCAAGCAATGCTATCGCCCTAGAAGTTCAACGGAGATGTCTTTGCTTAGGTCCTATACATATCCAATCTTTGCAAGTGGCTTCCATTTAGTAAAAACCAGGAAATATGTCTTTTCAAATAGGAGCAACGTACTCCTTAGTTCACTTTCAGGCAATACTTCAGTTCGACAGCATTATAACATAATGAGCTTAGGAATCGTCTAAAGAATCACAGCCTTGCATCTATGTGATAATATTTTTGCTTTCGGTTGATATTGGCAGGATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAGGTAATTTTTTTTGGTCAATGTTAGCTTATATTGCTTGTAAAAGCTTTGAATGATATACAATTGACTCTCAATATTCCTAATCCAGGCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAGGTAAATATTAGTGTGTTGATTTCAGTTGTTTACCATTCATATTGAAATTCGAGACATTCTTTATCAAAGAATCAAATGATATGATCAAACTAAATGAATCATCAGTGAAGATTCACAACATGTTCACCGCCTCTTATCCTAGTCCCTTCCTAAAACACACATCAGTATGCTCACTAAAATTAACACACATTTTTGTACAATCAATCGTAGTCCAAACGAAATACTACAAGAAATATGGTTTATTTCCTCTGTTGAAGTTGTTAGCTTGTCTGTTTAATATCGGATTCTTGTCCAACACTAGTCTATCTATGTCTTCTCGTTGGTTTTAACATCGAATTTCTACAGCATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAAC</genome_strand>
        <mrna_strand>AAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAG......................................................................................................................................................................................................................................................................................................................GATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAG.....................................................................................GCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................CATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734700" ref_strand="+" ref_description="SGN-E734700 [LB13BD12]">
      <seq>ctcaacttggacatgtgaaggatcttgcaaaggcttttgttcaggttcttggaaatgagaaagcaagcaagcaagtatttaacatatccggagagaaatatgtcacatttgatggattagctaaggcttgcgccaaggctggtggtttcccggaacccgagcttgttcattacaaccctaaggagttcgattttggcaagaagaaagcattcccattccgtgaccagcatttctttacatccatcgagaagtcaaaggctgagctaggatggaaacctgattttgatctggtggaaggtcttacagactcttacaacctagatttcggacgaggaacattcaggaaagcagctgatttctctacagatgatatgattcttgaaaagaaactagttccccagagctaatatttctgtttttcatttcattagttttggtttcttgctttttctccaagaagttcacaagtcattagtggcaaactatttgaaattttccttgtatattaacttcactaaaatgaaatgaatgacaactattgtcattttgccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13244" stop="14824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13557" g_stop="13673" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="137" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13674" i_stop="13758" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13759" g_stop="13848" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="227" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13849" i_stop="14193" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14194" g_stop="14529" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="563" r_length="336" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E734700" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13557" e_stop="13673"/>
          <exon e_start="13759" e_stop="13848"/>
          <exon e_start="14194" e_stop="14529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAGGTAATTTTTTTTGGTCAATGTTAGCTTATATTGCTTGTAAAAGCTTTGAATGATATACAATTGACTCTCAATATTCCTAATCCAGGCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAGGTAAATATTAGTGTGTTGATTTCAGTTGTTTACCATTCATATTGAAATTCGAGACATTCTTTATCAAAGAATCAAATGATATGATCAAACTAAATGAATCATCAGTGAAGATTCACAACATGTTCACCGCCTCTTATCCTAGTCCCTTCCTAAAACACACATCAGTATGCTCACTAAAATTAACACACATTTTTGTACAATCAATCGTAGTCCAAACGAAATACTACAAGAAATATGGTTTATTTCCTCTGTTGAAGTTGTTAGCTTGTCTGTTTAATATCGGATTCTTGTCCAACACTAGTCTATCTATGTCTTCTCGTTGGTTTTAACATCGAATTTCTACAGCATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAACATTTTT</genome_strand>
        <mrna_strand>GATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAG.....................................................................................GCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................CATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294060" ref_strand="+" ref_description="SGN-E294060 [cLET-13-I9]">
      <seq>ttggaaatgagaaagcaagcaagcaagtatttaacatatccggagagaaatatgtcacatttgatggattagctaaggcttgcgccaaggctggtggtttcccggaacccgagcttgttcattacaaccctaaggagttcgattttggcaagaagaaagcattcccattccgtgaccagcatttctttacatccatcgagaagtcaaaggctgagctaggatggaaacctgattttgatctggtggaaggtcttacagactcttacaacctagatttcggacgaggaacattcaggaaagcagctgatttctctacagatgatatgattcttgaaaagaaactagttccccagagctaatatttctgtttttcatttcattagttctggtttcttgctttttctccaagaagttcacaagtcattagtggcaaactatttgaaattttccttgtatattaacttcactaaaatgaaatgaatgacaactattgtcattttgccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13285" stop="14824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13585" g_stop="13673" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13674" i_stop="13758" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13759" g_stop="13848" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="179" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13849" i_stop="14193" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14194" g_stop="14527" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="513" r_length="334" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E294060" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13585" e_stop="13673"/>
          <exon e_start="13759" e_stop="13848"/>
          <exon e_start="14194" e_stop="14527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAGGTAATTTTTTTTGGTCAATGTTAGCTTATATTGCTTGTAAAAGCTTTGAATGATATACAATTGACTCTCAATATTCCTAATCCAGGCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAGGTAAATATTAGTGTGTTGATTTCAGTTGTTTACCATTCATATTGAAATTCGAGACATTCTTTATCAAAGAATCAAATGATATGATCAAACTAAATGAATCATCAGTGAAGATTCACAACATGTTCACCGCCTCTTATCCTAGTCCCTTCCTAAAACACACATCAGTATGCTCACTAAAATTAACACACATTTTTGTACAATCAATCGTAGTCCAAACGAAATACTACAAGAAATATGGTTTATTTCCTCTGTTGAAGTTGTTAGCTTGTCTGTTTAATATCGGATTCTTGTCCAACACTAGTCTATCTATGTCTTCTCGTTGGTTTTAACATCGAATTTCTACAGCATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAACATTT</genome_strand>
        <mrna_strand>TTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAG.....................................................................................GCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................CATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTCTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200470" ref_strand="-" ref_description="SGN-E200470 [cLEB-8-N5]">
      <seq>tgagaaagcaagcaagccagtatttaacatatccggagagaaatatgtcacatttgatggattagctaaggcttgcgccaaggctggtggtttcccggaacccgagcttgttcattacaaccctaaggagttcgattttggcaagaagaaagcattcccattccgtgaccagcatttctttacatccatcgagaagtcaaaggctgagctaggatggaaacctgattttgatctggtggaaggtcttacagactcttacaacctagatttcggacgaggaacattcaggaaagcagctgatttctctacagatgatatgattcttgaaaagaaactagttccccagagctaatatttctgtttttcatttcattagttttggtttcttgctttttctccaagaagttcacaagtcattagtggcaaactatttgaaattttccttgtatattaacttcactaaaatgaaatgaatgacaactattgtcattttgccatcaaaaaaaaaaaaaaaaaaactcgagctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13292" stop="14824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13592" g_stop="13673" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13674" i_stop="13758" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13759" g_stop="13848" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="172" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13849" i_stop="14193" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14194" g_stop="14523" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="502" r_length="330" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="503" polyA_stop="519"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E200470" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200470" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13592" e_stop="13673"/>
          <exon e_start="13759" e_stop="13848"/>
          <exon e_start="14194" e_stop="14523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAGGTAATTTTTTTTGGTCAATGTTAGCTTATATTGCTTGTAAAAGCTTTGAATGATATACAATTGACTCTCAATATTCCTAATCCAGGCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAGGTAAATATTAGTGTGTTGATTTCAGTTGTTTACCATTCATATTGAAATTCGAGACATTCTTTATCAAAGAATCAAATGATATGATCAAACTAAATGAATCATCAGTGAAGATTCACAACATGTTCACCGCCTCTTATCCTAGTCCCTTCCTAAAACACACATCAGTATGCTCACTAAAATTAACACACATTTTTGTACAATCAATCGTAGTCCAAACGAAATACTACAAGAAATATGGTTTATTTCCTCTGTTGAAGTTGTTAGCTTGTCTGTTTAATATCGGATTCTTGTCCAACACTAGTCTATCTATGTCTTCTCGTTGGTTTTAACATCGAATTTCTACAGCATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAAC</genome_strand>
        <mrna_strand>TGAGAAAGCAAGCAAGCCAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAG.....................................................................................GCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................CATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292292" ref_strand="+" ref_description="SGN-E292292 [cLET-1-G19](-)">
      <seq>aagcaagtatttaacatatccggagagaaatatgtcacatttgatggattagctaaggcttgcgccaaggctggtggtttcccggaacccgagcttgttcattacaaccctaaggagttcgattttggcaagaagaaagcattcccattccgtgaccagcatttctttacatccatcgagaagtcaaaggctgagctaggatggaaacctgattttgatctggtggaaggtcttacagactcttacaacctagatttcggacgaggaacattcaggaaagcagctgatttctctacagatgatatgattcttgaaaagaaactagttccccagagctaatatttctgtttttcatttcattagttttggtttcttgctttttctccaagaagttcacaagtcattagtggcaaactatttgaaattttccttgtatattaacttcactaaaatgaaatgaatgacaactattgtcattttgccatcaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13305" stop="14824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13605" g_stop="13673" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13674" i_stop="13758" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13759" g_stop="13848" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="159" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13849" i_stop="14193" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14194" g_stop="14523" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="489" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="490" polyA_stop="503"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E292292" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13605" e_stop="13673"/>
          <exon e_start="13759" e_stop="13848"/>
          <exon e_start="14194" e_stop="14523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAGGTAATTTTTTTTGGTCAATGTTAGCTTATATTGCTTGTAAAAGCTTTGAATGATATACAATTGACTCTCAATATTCCTAATCCAGGCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAGGTAAATATTAGTGTGTTGATTTCAGTTGTTTACCATTCATATTGAAATTCGAGACATTCTTTATCAAAGAATCAAATGATATGATCAAACTAAATGAATCATCAGTGAAGATTCACAACATGTTCACCGCCTCTTATCCTAGTCCCTTCCTAAAACACACATCAGTATGCTCACTAAAATTAACACACATTTTTGTACAATCAATCGTAGTCCAAACGAAATACTACAAGAAATATGGTTTATTTCCTCTGTTGAAGTTGTTAGCTTGTCTGTTTAATATCGGATTCTTGTCCAACACTAGTCTATCTATGTCTTCTCGTTGGTTTTAACATCGAATTTCTACAGCATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAAC</genome_strand>
        <mrna_strand>AAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAG.....................................................................................GCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................CATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738883" ref_strand="+" ref_description="SGN-E738883 [LC15BC03]">
      <seq>atttaacatatccggagagaaatatgtcacatttgatggattagctaaggcttgcgccaaggctggtggtttcccggaacccgagcttgttcattacaaccctaaggagttcgattttggcaagaagaaagcattcccattccgtgaccagcatttctttacatccatcgagaagtcaaaggctgagctaggatggaaacctgattttgatctggtggaaggtcttacagactcttacaacctagatttcggacgaggaacattcaggaaagcagctgatttctctacagatgatatgattcttgaaaagaaactagttccccagagctaatatttctgtttttcatttcattagttttgttttcttgctttttctccaagaagttcacaagtcattagtggcaaactatttgaaattttccttgtatattaacttcactaaaatgaaatgaatgacaactattgtcattttgccatcaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13313" stop="14824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13613" g_stop="13673" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13674" i_stop="13758" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13759" g_stop="13848" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="151" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13849" i_stop="14193" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14194" g_stop="14523" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="481" r_length="330" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="482" polyA_stop="506"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E738883" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13613" e_stop="13673"/>
          <exon e_start="13759" e_stop="13848"/>
          <exon e_start="14194" e_stop="14523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAGGTAATTTTTTTTGGTCAATGTTAGCTTATATTGCTTGTAAAAGCTTTGAATGATATACAATTGACTCTCAATATTCCTAATCCAGGCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAGGTAAATATTAGTGTGTTGATTTCAGTTGTTTACCATTCATATTGAAATTCGAGACATTCTTTATCAAAGAATCAAATGATATGATCAAACTAAATGAATCATCAGTGAAGATTCACAACATGTTCACCGCCTCTTATCCTAGTCCCTTCCTAAAACACACATCAGTATGCTCACTAAAATTAACACACATTTTTGTACAATCAATCGTAGTCCAAACGAAATACTACAAGAAATATGGTTTATTTCCTCTGTTGAAGTTGTTAGCTTGTCTGTTTAATATCGGATTCTTGTCCAACACTAGTCTATCTATGTCTTCTCGTTGGTTTTAACATCGAATTTCTACAGCATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAAC</genome_strand>
        <mrna_strand>ATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAG.....................................................................................GCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................CATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGTTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287123" ref_strand="+" ref_description="SGN-E287123 [cLES-6-E4]">
      <seq>ggctggtggtttcccggaacccgagcttgttcattacaaccctaaggagttcgattttggcaagaagaaagcattcccattccgtgaccagcatttctttacatccatcgagaagtcaaaggctgagctaggatggaaacctgattttgatctggtggaaggtcttacagactcttacaacctagatttcggacgaggaacattcaggaaagcagctgatttctctacagatgatatgattcttgaaaagaaactagttccccagagctaatatttctgtttttcatttcattagttttggtttcttgctttttctccaagaagttcacaagtcattagtggcaaactatttgaaattttccttgtatattaacttcactaaaatgaaatgaatgacaactattgtcattttgccatcaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13458" stop="14824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13758" g_stop="13848" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13849" i_stop="14193" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14194" g_stop="14523" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="421" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="422" polyA_stop="432"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E287123" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13758" e_stop="13848"/>
          <exon e_start="14194" e_stop="14523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAGGTAAATATTAGTGTGTTGATTTCAGTTGTTTACCATTCATATTGAAATTCGAGACATTCTTTATCAAAGAATCAAATGATATGATCAAACTAAATGAATCATCAGTGAAGATTCACAACATGTTCACCGCCTCTTATCCTAGTCCCTTCCTAAAACACACATCAGTATGCTCACTAAAATTAACACACATTTTTGTACAATCAATCGTAGTCCAAACGAAATACTACAAGAAATATGGTTTATTTCCTCTGTTGAAGTTGTTAGCTTGTCTGTTTAATATCGGATTCTTGTCCAACACTAGTCTATCTATGTCTTCTCGTTGGTTTTAACATCGAATTTCTACAGCATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAAC</genome_strand>
        <mrna_strand>GGCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................CATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224692" ref_strand="+" ref_description="SGN-E224692 [cLEL-27-J15](-)">
      <seq>gttcgattttggcaagaagaaagcattcccattccgtgaccagcatttctttacatccatcgagaagtcaaaggctgagctaggatggaaacctgattttgatctggtggaaggtcttacagactcttacaacctagatttcggacgaggaacattcaggaaagcagctgatttctctacagatgatatgattcttgaaaagaaactagttccccagagctaatatttctgtttttcatttcattagttttggtttcttgctttttctccaagaagttcacaagtcattagtggcaaactatttgaaattttccttgtatattaacttcactaaaatgaaatgaatgacaactattgtcattttgccatcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13506" stop="14824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13806" g_stop="13848" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13849" i_stop="14193" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14194" g_stop="14523" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="373" r_length="330" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="374" polyA_stop="388"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E224692" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13806" e_stop="13848"/>
          <exon e_start="14194" e_stop="14523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAGGTAAATATTAGTGTGTTGATTTCAGTTGTTTACCATTCATATTGAAATTCGAGACATTCTTTATCAAAGAATCAAATGATATGATCAAACTAAATGAATCATCAGTGAAGATTCACAACATGTTCACCGCCTCTTATCCTAGTCCCTTCCTAAAACACACATCAGTATGCTCACTAAAATTAACACACATTTTTGTACAATCAATCGTAGTCCAAACGAAATACTACAAGAAATATGGTTTATTTCCTCTGTTGAAGTTGTTAGCTTGTCTGTTTAATATCGGATTCTTGTCCAACACTAGTCTATCTATGTCTTCTCGTTGGTTTTAACATCGAATTTCTACAGCATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAAC</genome_strand>
        <mrna_strand>GTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................CATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278797" ref_strand="+" ref_description="SGN-E278797 [cLER-2-F3]">
      <seq>aagaagaaagcattcccattccgtgaccagcatttctttacatccatcgagaagtcaaaggctgagctaggatggaaacctgattttgatctggtggaaggtcttacagactcttacaacctagatttcggacgaggaacattcaggaaagcagctgatttctctacagatgatatgattcttgaaaagaaactagttccccagagctaatatttctgtttttcatttcattagttttggtttcttgctttttctccaagaagttcacaagtcattagtggcaaactatttgaaattttccttgtatattaacttcactaaaatgaaatgaatgacaactattgtcattttgccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13519" stop="14824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13819" g_stop="13848" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13849" i_stop="14193" i_length="345">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14194" g_stop="14527" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="364" r_length="334" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E278797" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13819" e_stop="13848"/>
          <exon e_start="14194" e_stop="14527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAAGCATTCCCATTCCGTGACCAGGTAAATATTAGTGTGTTGATTTCAGTTGTTTACCATTCATATTGAAATTCGAGACATTCTTTATCAAAGAATCAAATGATATGATCAAACTAAATGAATCATCAGTGAAGATTCACAACATGTTCACCGCCTCTTATCCTAGTCCCTTCCTAAAACACACATCAGTATGCTCACTAAAATTAACACACATTTTTGTACAATCAATCGTAGTCCAAACGAAATACTACAAGAAATATGGTTTATTTCCTCTGTTGAAGTTGTTAGCTTGTCTGTTTAATATCGGATTCTTGTCCAACACTAGTCTATCTATGTCTTCTCGTTGGTTTTAACATCGAATTTCTACAGCATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAACATTT</genome_strand>
        <mrna_strand>AAGAAGAAAGCATTCCCATTCCGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................CATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224616" ref_strand="+" ref_description="SGN-E224616 [cLEL-27-J15](-)">
      <seq>gcattcccattccgtgaccagcatttctttacatccatcaaaagtcaaaggctgagttaggatggaaacctgattttgatctggtggaaggtcttccagactcttacaacctagatttcggacgaggaacattcaggaaagcagctgatttctctacagatgatatgattcttgaaaagaaactagttccccagagctaatatttctgtttttcatttcattagttttggtttcttgctttttctccaagaagttcacaagtcattagtggcaaactatttgaaattttccttgtatattaacttcactaaaatgaaatgaatgacaactattgtcattttgccatcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13528" stop="14824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13828" g_stop="13848" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13849" i_stop="14193" i_length="345">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.881" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14194" g_stop="14523" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="350" r_length="329" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="351" polyA_stop="365"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E224616" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13828" e_stop="13848"/>
          <exon e_start="14194" e_stop="14523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTCCCATTCCGTGACCAGGTAAATATTAGTGTGTTGATTTCAGTTGTTTACCATTCATATTGAAATTCGAGACATTCTTTATCAAAGAATCAAATGATATGATCAAACTAAATGAATCATCAGTGAAGATTCACAACATGTTCACCGCCTCTTATCCTAGTCCCTTCCTAAAACACACATCAGTATGCTCACTAAAATTAACACACATTTTTGTACAATCAATCGTAGTCCAAACGAAATACTACAAGAAATATGGTTTATTTCCTCTGTTGAAGTTGTTAGCTTGTCTGTTTAATATCGGATTCTTGTCCAACACTAGTCTATCTATGTCTTCTCGTTGGTTTTAACATCGAATTTCTACAGCATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAAC</genome_strand>
        <mrna_strand>GCATTCCCATTCCGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................CATTTCTTTACATCCATC-AAAAGTCAAAGGCTGAGTTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTCCAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230544" ref_strand="+" ref_description="SGN-E230544 [cLEL-35-H13](-)">
      <seq>gcattcccataccgtgaccagcatttctttacatccatcgagaagtcaaagactgagctaggatggaaaccaaattttgatctggtggaaggtcttacagactcttacaacctagatttcggacgaggaacattcaggaaagcagctgatttctctacagatgatatgattcttgaaaagaaactagttccccagagctaatatttctgtttttcatttcattaggttttggtttcttgctttttctccaaaaagttctcaagtcattagtggcaaactatttgaaattttccttgtatattaacttcactaaaatgaaatgaatcacaactattgtcattttgccatcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13878" stop="14824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14194" g_stop="14524" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="353" r_length="332" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E230544" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14194" e_stop="14524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTA-GTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAACA</genome_strand>
        <mrna_strand>CATTTCTTTACATCCATCGAGAAGTCAAAGACTGAGCTAGGATGGAAACCAAATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGGTTTTGGTTTCTTGCTTTTTCTCCAAAAAGTTCTCAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATCACAACTATTGTCATTTTGCCATCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209513" ref_strand="+" ref_description="SGN-E209513 [cLEC-54-B3]">
      <seq>ccaaacttgcactttatatattctcccaaaagctactcctaatttgtctcctatttttttctcaacaaaacaaactacaaccaccccttaatagtttacaatccaaaaaccaaatgcaattcccagccattttcttcaaaactcggtgcattgtcaatctcttcaacccaatcctcctctccttactcccaaaaaaactcatctccttccttcctccatcttggttccaccaaaaacgcatccattcgcggtcaccggcgccgccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18105" stop="18970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18405" g_stop="18670" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E209513" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18405" e_stop="18670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAACTTGCACTTTATATATTCTCCCAAAAGCTACTCCTAATTTGTCTCCTA-TTTTTTCTCAACAAAACAAACTACAACCACCCCTTAATAGTTTACAATCCAAAAACCAAATGCAATTCCCAGCCATTTTCTTCAAAACTCGTTGCATTTTCAATCTCTTCAACCCAATCCTCCTCTCCTTACTCCCAAAAAAACTCATCTCCTTCCTTCCTCCATCTTGGTTCCACCAAAAACGCATCCATTCGCGGTCACCGGCGCCGCCAC</genome_strand>
        <mrna_strand>CCAAACTTGCACTTTATATATTCTCCCAAAAGCTACTCCTAATTTGTCTCCTATTTTTTTCTCAACAAAACAAACTACAACCACCCCTTAATAGTTTACAATCCAAAAACCAAATGCAATTCCCAGCCATTTTCTTCAAAACTCGGTGCATTGTCAATCTCTTCAACCCAATCCTCCTCTCCTTACTCCCAAAAAAACTCATCTCCTTCCTTCCTCCATCTTGGTTCCACCAAAAACGCATCCATTCGCGGTCACCGGCGCCGCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549589" ref_strand="+" ref_description="SGN-E549589 [TUS-71-M24]">
      <seq>cttcaacccaatcctcctctccttactcccaaaaaaactcatctccttccttcctccatcttggttccaacaaaaacacatccattcgcggtcaccggcgccgccacaacagtcgccggtttccgtttccgacgccgttgaatcgcatcagaagagaatggactcagacgaactccgacgtatcttccaaatcttcgatcggaacggcgacggacggataacgaagaatgaattaaacagttcgttagagaatatggggatattcataccagatccggaattaatccagatgatcgagaaaatcgatgtgaatggagacggttgcgttgacatagatgagttcggttcgctttaccagaccatcatggatgaacgcgatgaagaagaagatatgcgtgaggcattcaatgtgttcgatcaaaacggcgacggattcatttgtgttgaggaattgaaatctgttctcgcatcgttagggctaaaacagggacgaacagtagaggattgtaaacaaatgattaacaaagtggacattgatggagatggaatggttaattatgctgagtttaagcagatgatgagaggaangtggttttgctgcattgagttagttttatttttattttaattatttcgtcttttttttctcactatttttatttattaaaatagacaaggaaagaataatttttatttttatttttttattgtcataggctgtgacatgtaaataaattgttactgctaattatttatttttttaaattgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18264" stop="19634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18564" g_stop="19329" g_length="766"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E549589" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18564" e_stop="19329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAACCCAATCCTCCTCTCCTTACTCCCAAAAAAACTCATCTCCTTCCTTCCTCCATCTTGGTTCCACCAAAAACGCATCCATTCGCGGTCACCGGCGCCGCCACAGCAGTCGCCGGTTTCCGTTTCCGACGCGGTTGAATCGCATCAGAAGAGAATGGACTCAGACGAACTCCGACGTATCTTCCAAATCTTCGATCGGAACGGCGACGGACGGATAACGAAGAATGAATTAAACAGTTCGTTAGAGAATATGGGGATATTCATACCAGATCCGGAATTAATCCAGATGATCGAGAAAATCGATGTGAATGGAGACGGTTGCGTTGACATAGATGAGTTCGGTTCGCTTTACCAGACCATCATGGATGAACGCGATGAAGAAGAAGATATGCGTGAGGCATTCAATGTGTTCGATCAAAACGGCGACGGATTCATTTGTGTTGAGGAATTGAAATCTGTTCTCGCATCGTTAGGGCTAAAACAGGGACGAACCGTAGAGGATTGTAAACAAATGATTAACAAAGTGGACATTGATGGAGATGGAATGGTTAATTATGATGAGTTTAAGCAGATGATGAGAGG-AGGTGGTTTTGCTGCATTGAGTTAGTTTTATTTTTATTTTAATTATTTCGTCTGTTTTTTTACTCACTATTTTTA-TTATTAAAATAGACAAGGAAAGAATAACTTTTATTTTTATTTTTTTAATGTCATAGGCGGTGACATGTAAATAAATTGTTACTGCTATTATTTTATTTTTTCAATT</genome_strand>
        <mrna_strand>CTTCAACCCAATCCTCCTCTCCTTACTCCCAAAAAAACTCATCTCCTTCCTTCCTCCATCTTGGTTCCAACAAAAACACATCCATTCGCGGTCACCGGCGCCGCCACAACAGTCGCCGGTTTCCGTTTCCGACGCCGTTGAATCGCATCAGAAGAGAATGGACTCAGACGAACTCCGACGTATCTTCCAAATCTTCGATCGGAACGGCGACGGACGGATAACGAAGAATGAATTAAACAGTTCGTTAGAGAATATGGGGATATTCATACCAGATCCGGAATTAATCCAGATGATCGAGAAAATCGATGTGAATGGAGACGGTTGCGTTGACATAGATGAGTTCGGTTCGCTTTACCAGACCATCATGGATGAACGCGATGAAGAAGAAGATATGCGTGAGGCATTCAATGTGTTCGATCAAAACGGCGACGGATTCATTTGTGTTGAGGAATTGAAATCTGTTCTCGCATCGTTAGGGCTAAAACAGGGACGAACAGTAGAGGATTGTAAACAAATGATTAACAAAGTGGACATTGATGGAGATGGAATGGTTAATTATGCTGAGTTTAAGCAGATGATGAGAGGAANGTGGTTTTGCTGCATTGAGTTAGTTTTATTTTTATTTTAATTATTTCGTCT-TTTTTTT-CTCACTATTTTTATTTATTAAAATAGACAAGGAAAGAATAATTTTTATTTTTATTTTTTTATTGTCATAGGCTGTGACATGTAAATAAATTGTTACTGCTAATTATTTATTTTTTTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364544" ref_strand="+" ref_description="SGN-E364544 [cLPP-18-L21]">
      <seq>aacccaatccttctctccttactcccaaaaaaacggatctccttccttcctccatcttggttccaacaaaaacacatccattcgcggtcaccggcgccgccacaacagtcgccggtttccgtttccgacgccgttgaatcgcatcagaagagaatggacttacactaacttcgacgtatcttccaaatcttcgatcggaacggcgacggacggataacgaataatgaattaaacagctcgttagagaatatggggatattcataccagatccggaattaatccacatgatcgagaaaatcgatgtgaatggagacgggtgcgttgacatagatgagttcggttcgctttacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18268" stop="19220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18568" g_stop="18920" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E364544" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18568" e_stop="18920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCAATCCTCCTCTCCTTACTCCCAAAAAAACTCATCTCCTTCCTTCCTCCATCTTGGTTCCACCAAAAACGCATCCATTCGCGGTCACCGGCGCCGCCACAGCAGTCGCCGGTTTCCGTTTCCGACGCGGTTGAATCGCATCAGAAGAGAATGGACTCAGACGAACTCCGACGTATCTTCCAAATCTTCGATCGGAACGGCGACGGACGGATAACGAAGAATGAATTAAACAGTTCGTTAGAGAATATGGGGATATTCATACCAGATCCGGAATTAATCCAGATGATCGAGAAAATCGATGTGAATGGAGACGGTTGCGTTGACATAGATGAGTTCGGTTCGCTTTACCA</genome_strand>
        <mrna_strand>AACCCAATCCTTCTCTCCTTACTCCCAAAAAAACGGATCTCCTTCCTTCCTCCATCTTGGTTCCAACAAAAACACATCCATTCGCGGTCACCGGCGCCGCCACAACAGTCGCCGGTTTCCGTTTCCGACGCCGTTGAATCGCATCAGAAGAGAATGGACTTACACTAACTTCGACGTATCTTCCAAATCTTCGATCGGAACGGCGACGGACGGATAACGAATAATGAATTAAACAGCTCGTTAGAGAATATGGGGATATTCATACCAGATCCGGAATTAATCCACATGATCGAGAAAATCGATGTGAATGGAGACGGGTGCGTTGACATAGATGAGTTCGGTTCGCTTTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547762" ref_strand="+" ref_description="SGN-E547762 [TUS-71-M24](-)">
      <seq>tccttcctccatcttgttccaacaaaaacacatccattcgcggtcaccggcgccgccacaacagtcgccggtttccgtttccgacgccgttgaatcgcatcagaagagaatggactcagacgaactccgacgtatcttccaaatcttcgatcggaacggcgacggacggataacgaagaatgaattaaacagttcgttagagaatatggggatattcataccagatccggaattaatccagatgatcgagaaaatcgatgtgaatggagacggttgcgttgacatagatgagttcggttcgctttaccagaccatcatggatgaacgcgatgaagaagaagatatgcgtgaggcattcaatgtgttcgatcaaaacggcgacggattcatttgtgttgaggaattgaaatctgttctcgcatcgttagggctaaaacagggacgaacagtagaggattgtaaacaaatgattaacaaagtggacattgatggagatggaatggttaattatgctgagtttaagcagatgatgagaggaggtggttttgctgcattgagttagttttatttttattttaattatttcgtcttttttttctcactatttttatttattaaaatagacaaggaaagaataatttttatttttatttttttattgtcataggctgtgacatgtaaataaattgttactgctattattttatttttttaattgtaaaaaaaaaaaaaaaaaactcgaggggggcccggtccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18311" stop="19634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18611" g_stop="19329" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="720" polyA_stop="738"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E547762" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18611" e_stop="19329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCCTCCATCTTGGTTCCACCAAAAACGCATCCATTCGCGGTCACCGGCGCCGCCACAGCAGTCGCCGGTTTCCGTTTCCGACGCGGTTGAATCGCATCAGAAGAGAATGGACTCAGACGAACTCCGACGTATCTTCCAAATCTTCGATCGGAACGGCGACGGACGGATAACGAAGAATGAATTAAACAGTTCGTTAGAGAATATGGGGATATTCATACCAGATCCGGAATTAATCCAGATGATCGAGAAAATCGATGTGAATGGAGACGGTTGCGTTGACATAGATGAGTTCGGTTCGCTTTACCAGACCATCATGGATGAACGCGATGAAGAAGAAGATATGCGTGAGGCATTCAATGTGTTCGATCAAAACGGCGACGGATTCATTTGTGTTGAGGAATTGAAATCTGTTCTCGCATCGTTAGGGCTAAAACAGGGACGAACCGTAGAGGATTGTAAACAAATGATTAACAAAGTGGACATTGATGGAGATGGAATGGTTAATTATGATGAGTTTAAGCAGATGATGAGAGGAGGTGGTTTTGCTGCATTGAGTTAGTTTTATTTTTATTTTAATTATTTCGTCTGTTTTTTTACTCACTATTTTTA-TTATTAAAATAGACAAGGAAAGAATAACTTTTATTTTTATTTTTTTAATGTCATAGGCGGTGACATGTAAATAAATTGTTACTGCTATTATTTTATTTTTTCAATT</genome_strand>
        <mrna_strand>TCCTTCCTCCATCTT-GTTCCAACAAAAACACATCCATTCGCGGTCACCGGCGCCGCCACAACAGTCGCCGGTTTCCGTTTCCGACGCCGTTGAATCGCATCAGAAGAGAATGGACTCAGACGAACTCCGACGTATCTTCCAAATCTTCGATCGGAACGGCGACGGACGGATAACGAAGAATGAATTAAACAGTTCGTTAGAGAATATGGGGATATTCATACCAGATCCGGAATTAATCCAGATGATCGAGAAAATCGATGTGAATGGAGACGGTTGCGTTGACATAGATGAGTTCGGTTCGCTTTACCAGACCATCATGGATGAACGCGATGAAGAAGAAGATATGCGTGAGGCATTCAATGTGTTCGATCAAAACGGCGACGGATTCATTTGTGTTGAGGAATTGAAATCTGTTCTCGCATCGTTAGGGCTAAAACAGGGACGAACAGTAGAGGATTGTAAACAAATGATTAACAAAGTGGACATTGATGGAGATGGAATGGTTAATTATGCTGAGTTTAAGCAGATGATGAGAGGAGGTGGTTTTGCTGCATTGAGTTAGTTTTATTTTTATTTTAATTATTTCGTCT-TTTTTTT-CTCACTATTTTTATTTATTAAAATAGACAAGGAAAGAATAATTTTTATTTTTATTTTTTTATTGTCATAGGCTGTGACATGTAAATAAATTGTTACTGCTATTATTTTATTTTTTTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364969" ref_strand="+" ref_description="SGN-E364969 [cLPP-17-I14]">
      <seq>tcagacgaactccgacgtatcttccaaatcttcgatcggaacggcgacggacggataacgaagaatgaattaaacagttcgttagagaatatggggatattcataccagatccggaattaatccagatgatcgagaaaatcgatgtgaatggagacggttgcgttgacatagatgagttcggttcgctttaccagaccatcatggatgaacgcgatgaagaagaagatatgcgtgaggcattcaatgtgttcgatcaaaacggcgacggattcatttgtgttgaggaattgaaatctgttctcgcatcgttagggctaaaacagggacgaacagtagaggattgtaaacaaatgattaacaaagtggacattgatggagatggaatggttaattatgctgagtttaagcagatgatgagaggaggtggttttgctgcattgaggtagttttatttttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18427" stop="19488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18727" g_stop="19188" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E364969" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18727" e_stop="19188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGACGAACTCCGACGTATCTTCCAAATCTTCGATCGGAACGGCGACGGACGGATAACGAAGAATGAATTAAACAGTTCGTTAGAGAATATGGGGATATTCATACCAGATCCGGAATTAATCCAGATGATCGAGAAAATCGATGTGAATGGAGACGGTTGCGTTGACATAGATGAGTTCGGTTCGCTTTACCAGACCATCATGGATGAACGCGATGAAGAAGAAGATATGCGTGAGGCATTCAATGTGTTCGATCAAAACGGCGACGGATTCATTTGTGTTGAGGAATTGAAATCTGTTCTCGCATCGTTAGGGCTAAAACAGGGACGAACCGTAGAGGATTGTAAACAAATGATTAACAAAGTGGACATTGATGGAGATGGAATGGTTAATTATGATGAGTTTAAGCAGATGATGAGAGGAGGTGGTTTTGCTGCATTGAGTTAGTTTTATTTTTATTTT</genome_strand>
        <mrna_strand>TCAGACGAACTCCGACGTATCTTCCAAATCTTCGATCGGAACGGCGACGGACGGATAACGAAGAATGAATTAAACAGTTCGTTAGAGAATATGGGGATATTCATACCAGATCCGGAATTAATCCAGATGATCGAGAAAATCGATGTGAATGGAGACGGTTGCGTTGACATAGATGAGTTCGGTTCGCTTTACCAGACCATCATGGATGAACGCGATGAAGAAGAAGATATGCGTGAGGCATTCAATGTGTTCGATCAAAACGGCGACGGATTCATTTGTGTTGAGGAATTGAAATCTGTTCTCGCATCGTTAGGGCTAAAACAGGGACGAACAGTAGAGGATTGTAAACAAATGATTAACAAAGTGGACATTGATGGAGATGGAATGGTTAATTATGCTGAGTTTAAGCAGATGATGAGAGGAGGTGGTTTTGCTGCATTGAGGTAGTTTTATTTTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251099" ref_strand="+" ref_description="SGN-E251099 [cLEG-17-F21]">
      <seq>ttgtttcggaaccaaacaactcctactagatcagtgaccttacggcgtcgtttgttcatcttctccgcaattattctattcttcattcggattcagtttctttggagaatttacttgggttttttgcttagtgttaattccctggtaattcctctcccttgccgatatagttcaattttttttatgtggtgttccgttgattgggcctcagtttgaattttttttaattttaacttacattagcattaacagctataatttgctgtgttaattaatcgtacattgtttgaatctcattaattatgtgtaatttagtgggtaagttgatgttaacggggaaaagattatattcccgtaatatttaaggtaataatctaacaattgatggtttatgagctgtttaatggctttgttaaatgtatttgatgctttgtagaatttaatctctcagtaataatataacaattgacttctgtgttttttttttctttattgacgttgcgatttgtataattttcgatctaggtgaaattctataggttttgtgttaaaatacaaacaatgtttgtctagttttggatatgaaatgctaagatggaattaggaaggggaagaggtttatttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21145" stop="22372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21445" g_stop="22072" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E251099" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21445" e_stop="22072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCGGAACCAAACAACTCCTACTAGATCAGTGACCTTACGGCGTCGTTTGTTCATCTTCTCCGCAATTATTCTATTCTTCATTCGGATTCAGTTTCTTTGGAGAATTTACTTGGGTTTTTTGCTTAGTGTTAATTCCCTGGTAATTCCTCTCCCTTGCCGATATAGTTCAATTTTTTTTATGTGGTGTTCCGTTGATTGGGCCTCAGTTTGAATTTTTTTTAATTTTAACTTACATTAGCATTAACAGCTATAATTTGCTGTGTTAATTAATCGTACATTGTTTGAATCTCATTAATTATGTGTAATTTAGTGGGTAAGTTGATGTTAACGGGGAAAAGATTATATTCCCGTAATATTTAAGGTAATAATCTAACAATTGATGGTTTATGAGCTGTTTAATGGCTTTGTTAAATGTATTTGATGCTTTGTAGAATTTAATCTCTCAGTAATAATATAACAATTGACTTCTGTGTTTTTTTTTTCTTTATTGACGTTGCGATTTGTATAATTTTCGATCTAGGTGAAATTCTATAGGTTTTGTGTTAAAATACAAACAATGTTTGTCTAGTTTTGGATATGAAATGCTAAGATGGAATTAGGAAGGGGAAGAGGTTTATTTTTGG</genome_strand>
        <mrna_strand>TTGTTTCGGAACCAAACAACTCCTACTAGATCAGTGACCTTACGGCGTCGTTTGTTCATCTTCTCCGCAATTATTCTATTCTTCATTCGGATTCAGTTTCTTTGGAGAATTTACTTGGGTTTTTTGCTTAGTGTTAATTCCCTGGTAATTCCTCTCCCTTGCCGATATAGTTCAATTTTTTTTATGTGGTGTTCCGTTGATTGGGCCTCAGTTTGAATTTTTTTTAATTTTAACTTACATTAGCATTAACAGCTATAATTTGCTGTGTTAATTAATCGTACATTGTTTGAATCTCATTAATTATGTGTAATTTAGTGGGTAAGTTGATGTTAACGGGGAAAAGATTATATTCCCGTAATATTTAAGGTAATAATCTAACAATTGATGGTTTATGAGCTGTTTAATGGCTTTGTTAAATGTATTTGATGCTTTGTAGAATTTAATCTCTCAGTAATAATATAACAATTGACTTCTGTGTTTTTTTTTTCTTTATTGACGTTGCGATTTGTATAATTTTCGATCTAGGTGAAATTCTATAGGTTTTGTGTTAAAATACAAACAATGTTTGTCTAGTTTTGGATATGAAATGCTAAGATGGAATTAGGAAGGGGAAGAGGTTTATTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378570" ref_strand="+" ref_description="SGN-E378570 [TUS-33-I2]">
      <seq>gcaaacaactcctactagatcatcgaccttacgggggcgaaatgttcatcttctccgcaattattctattcttcattcggattcagtttctttggagaatttacttttgccctttgcttagtgttaattccctggtaattcctctctcttgccgatatagttcagttttttttatgtggtgttccgttgattgggcctcagtttgaattttttttaattttaacttacattagcattaacagctataatttgctgtgttaattaatcgtacattgtttgaatctcattaattatgtgtaatttagtgggtaagttgatgttaacggggaaaagattatattcccgtaatatttaaggtaataatctaacaattgatggtttatgagctgtttaatggctttgttaaatgtatttgatgctttgtagaatttaatctctcagtaataatataacaattgacttctgtgttttttttttctttattgacgttgcgatttgtagaatgtgggatctaggtgaaattctataggttttgtgttaaaatacaaacaatgtttgtctagttttggatatgaaatgctaagatggaattaggaaggggaagaggtttatttttggaattagtgaaggtatgattggattaatcagcatcggagtttagatggagtaacatggtcagtgatgattcatatagcgagacgtagttattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21157" stop="22465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21456" g_stop="22165" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E378570" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21456" e_stop="22165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAACAACTCCTACTAGATCAGTGACCTTACGGCGTCG-TTTGTTCATCTTCTCCGCAATTATTCTATTCTTCATTCGGATTCAGTTTCTTTGGAGAATTTACTTGGGTTTTTTGCTTAGTGTTAATTCCCTGGTAATTCCTCTCCCTTGCCGATATAGTTCAATTTTTTTTATGTGGTGTTCCGTTGATTGGGCCTCAGTTTGAATTTTTTTTAATTTTAACTTACATTAGCATTAACAGCTATAATTTGCTGTGTTAATTAATCGTACATTGTTTGAATCTCATTAATTATGTGTAATTTAGTGGGTAAGTTGATGTTAACGGGGAAAAGATTATATTCCCGTAATATTTAAGGTAATAATCTAACAATTGATGGTTTATGAGCTGTTTAATGGCTTTGTTAAATGTATTTGATGCTTTGTAGAATTTAATCTCTCAGTAATAATATAACAATTGACTTCTGTGTTTTTTTTTTCTTTATTGACGTTGCGATTTGTATAATTTTCGATCTAGGTGAAATTCTATAGGTTTTGTGTTAAAATACAAACAATGTTTGTCTAGTTTTGGATATGAAATGCTAAGATGGAATTAGGAAGGGGAAGAGGTTTATTTTTGGAATTAGTGAAGGTATGATTGGATTAATCAGCATCGGAGTTTAGATGGAGTAACATGGTCAGTGATGATTCATATAGCGAGACGTAGTTATTTA</genome_strand>
        <mrna_strand>GCAAACAACTCCTACTAGATCATCGACCTTACGGGGGCGAAATGTTCATCTTCTCCGCAATTATTCTATTCTTCATTCGGATTCAGTTTCTTTGGAGAATTTACTTTTGCCCTTTGCTTAGTGTTAATTCCCTGGTAATTCCTCTCTCTTGCCGATATAGTTCAGTTTTTTTTATGTGGTGTTCCGTTGATTGGGCCTCAGTTTGAATTTTTTTTAATTTTAACTTACATTAGCATTAACAGCTATAATTTGCTGTGTTAATTAATCGTACATTGTTTGAATCTCATTAATTATGTGTAATTTAGTGGGTAAGTTGATGTTAACGGGGAAAAGATTATATTCCCGTAATATTTAAGGTAATAATCTAACAATTGATGGTTTATGAGCTGTTTAATGGCTTTGTTAAATGTATTTGATGCTTTGTAGAATTTAATCTCTCAGTAATAATATAACAATTGACTTCTGTGTTTTTTTTTTCTTTATTGACGTTGCGATTTGTAGAATGTGGGATCTAGGTGAAATTCTATAGGTTTTGTGTTAAAATACAAACAATGTTTGTCTAGTTTTGGATATGAAATGCTAAGATGGAATTAGGAAGGGGAAGAGGTTTATTTTTGGAATTAGTGAAGGTATGATTGGATTAATCAGCATCGGAGTTTAGATGGAGTAACATGGTCAGTGATGATTCATATAGCGAGACGTAGTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373614" ref_strand="+" ref_description="SGN-E373614 [TUS-33-I2]">
      <seq>aaacaactcctactagatcagtgaccttacggcgtcgtttgttcatcttctccgcaattattctattcttcattcggattcagtttctttggagaatttacttgggttttttgcttagtgttaattccctggtaattcctctctcttgccgatatagttcaattttttttatgtggtgttccgttgattgggcctcagtttgaattttttttaattttaacttacattagcattaacagctataatttgctgtgttaattaatcgtacattgtttgaatctcattaattatgtgtaatttagtgggtaagttgatgttaacggggaaaagattatattcccgtaatatttaaggtaataatctaacaattgatggtttatgagctgtttaatggctttgttaaatgtatttgatgctttgtagaatttaatctctcagtaataatataacaattgacttctgtgtttttttttttctttattgacgttgcgatttgtataattttcgatctaggtgaaattctataggttttgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21158" stop="22292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21458" g_stop="21992" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E373614" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21458" e_stop="21992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAACTCCTACTAGATCAGTGACCTTACGGCGTCGTTTGTTCATCTTCTCCGCAATTATTCTATTCTTCATTCGGATTCAGTTTCTTTGGAGAATTTACTTGGGTTTTTTGCTTAGTGTTAATTCCCTGGTAATTCCTCTCCCTTGCCGATATAGTTCAATTTTTTTTATGTGGTGTTCCGTTGATTGGGCCTCAGTTTGAATTTTTTTTAATTTTAACTTACATTAGCATTAACAGCTATAATTTGCTGTGTTAATTAATCGTACATTGTTTGAATCTCATTAATTATGTGTAATTTAGTGGGTAAGTTGATGTTAACGGGGAAAAGATTATATTCCCGTAATATTTAAGGTAATAATCTAACAATTGATGGTTTATGAGCTGTTTAATGGCTTTGTTAAATGTATTTGATGCTTTGTAGAATTTAATCTCTCAGTAATAATATAACAATTGACTTCTGTG-TTTTTTTTTTCTTTATTGACGTTGCGATTTGTATAATTTTCGATCTAGGTGAAATTCTATAGGTTTTGTGT</genome_strand>
        <mrna_strand>AAACAACTCCTACTAGATCAGTGACCTTACGGCGTCGTTTGTTCATCTTCTCCGCAATTATTCTATTCTTCATTCGGATTCAGTTTCTTTGGAGAATTTACTTGGGTTTTTTGCTTAGTGTTAATTCCCTGGTAATTCCTCTCTCTTGCCGATATAGTTCAATTTTTTTTATGTGGTGTTCCGTTGATTGGGCCTCAGTTTGAATTTTTTTTAATTTTAACTTACATTAGCATTAACAGCTATAATTTGCTGTGTTAATTAATCGTACATTGTTTGAATCTCATTAATTATGTGTAATTTAGTGGGTAAGTTGATGTTAACGGGGAAAAGATTATATTCCCGTAATATTTAAGGTAATAATCTAACAATTGATGGTTTATGAGCTGTTTAATGGCTTTGTTAAATGTATTTGATGCTTTGTAGAATTTAATCTCTCAGTAATAATATAACAATTGACTTCTGTGTTTTTTTTTTTCTTTATTGACGTTGCGATTTGTATAATTTTCGATCTAGGTGAAATTCTATAGGTTTTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305664" ref_strand="+" ref_description="SGN-E305664 [cLEX-14-H2]">
      <seq>aaacaactcctactagatcagtgaccttacggcgtcgtttgttcatcttctccgcaattattctattcttcattcggattcagtttctttggagaatttacttgggttttttgcttagtgttaattccctggtaattcctctctcttgccgatatagttcaattttttttatgtggtgttccgttgattgggcctcagtttgaattttttttaattttaacttacattagcattaacagctataatttgctgtgttaattaatcgtacattgtttgaatctcattaattatgtgtaatttagtgggtaagttgatgttaacggggaaaagattatattcccgtaatatttaaggtaataatctaacaattgatggtttatgagctgtttaatggctttgttaaatgtatttgatgctttgtagaatttaatctctcagtaataatataacaattgacttctgtgttttttttttctttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21158" stop="22238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21458" g_stop="21938" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E305664" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21458" e_stop="21938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAACTCCTACTAGATCAGTGACCTTACGGCGTCGTTTGTTCATCTTCTCCGCAATTATTCTATTCTTCATTCGGATTCAGTTTCTTTGGAGAATTTACTTGGGTTTTTTGCTTAGTGTTAATTCCCTGGTAATTCCTCTCCCTTGCCGATATAGTTCAATTTTTTTTATGTGGTGTTCCGTTGATTGGGCCTCAGTTTGAATTTTTTTTAATTTTAACTTACATTAGCATTAACAGCTATAATTTGCTGTGTTAATTAATCGTACATTGTTTGAATCTCATTAATTATGTGTAATTTAGTGGGTAAGTTGATGTTAACGGGGAAAAGATTATATTCCCGTAATATTTAAGGTAATAATCTAACAATTGATGGTTTATGAGCTGTTTAATGGCTTTGTTAAATGTATTTGATGCTTTGTAGAATTTAATCTCTCAGTAATAATATAACAATTGACTTCTGTGTTTTTTTTTTCTTTATT</genome_strand>
        <mrna_strand>AAACAACTCCTACTAGATCAGTGACCTTACGGCGTCGTTTGTTCATCTTCTCCGCAATTATTCTATTCTTCATTCGGATTCAGTTTCTTTGGAGAATTTACTTGGGTTTTTTGCTTAGTGTTAATTCCCTGGTAATTCCTCTCTCTTGCCGATATAGTTCAATTTTTTTTATGTGGTGTTCCGTTGATTGGGCCTCAGTTTGAATTTTTTTTAATTTTAACTTACATTAGCATTAACAGCTATAATTTGCTGTGTTAATTAATCGTACATTGTTTGAATCTCATTAATTATGTGTAATTTAGTGGGTAAGTTGATGTTAACGGGGAAAAGATTATATTCCCGTAATATTTAAGGTAATAATCTAACAATTGATGGTTTATGAGCTGTTTAATGGCTTTGTTAAATGTATTTGATGCTTTGTAGAATTTAATCTCTCAGTAATAATATAACAATTGACTTCTGTGTTTTTTTTTTCTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203729" ref_strand="+" ref_description="SGN-E203729 [cLEC-17-K3]">
      <seq>acaactcctactagatcagtgaccttacggcgtcgtttgttcatcttctccgcaattattctattcttcattcggattcagtttctttggagaatttacttgggttttttgcttagtgttaattccctggttagaaaaaaaccgctttcaatcacagcatcttgacctctgaactatggactcaaccgtggaaaatgtagcttattctcccaaaaatgtattcattctatctgggcaaagcaacatggctggtcgtggtggagtagaaaagcatcactgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21160" stop="22899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21460" g_stop="21588" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21589" i_stop="22445" i_length="857">
            <donor d_prob="0.573" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22446" g_stop="22599" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="283" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E203729" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21460" e_stop="21588"/>
          <exon e_start="22446" e_stop="22599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACTCCTACTAGATCAGTGACCTTACGGCGTCGTTTGTTCATCTTCTCCGCAATTATTCTATTCTTCATTCGGATTCAGTTTCTTTGGAGAATTTACTTGGGTTTTTTGCTTAGTGTTAATTCCCTGGTAATTCCTCTCCCTTGCCGATATAGTTCAATTTTTTTTATGTGGTGTTCCGTTGATTGGGCCTCAGTTTGAATTTTTTTTAATTTTAACTTACATTAGCATTAACAGCTATAATTTGCTGTGTTAATTAATCGTACATTGTTTGAATCTCATTAATTATGTGTAATTTAGTGGGTAAGTTGATGTTAACGGGGAAAAGATTATATTCCCGTAATATTTAAGGTAATAATCTAACAATTGATGGTTTATGAGCTGTTTAATGGCTTTGTTAAATGTATTTGATGCTTTGTAGAATTTAATCTCTCAGTAATAATATAACAATTGACTTCTGTGTTTTTTTTTTCTTTATTGACGTTGCGATTTGTATAATTTTCGATCTAGGTGAAATTCTATAGGTTTTGTGTTAAAATACAAACAATGTTTGTCTAGTTTTGGATATGAAATGCTAAGATGGAATTAGGAAGGGGAAGAGGTTTATTTTTGGAATTAGTGAAGGTATGATTGGATTAATCAGCATCGGAGTTTAGATGGAGTAACATGGTCAGTGATGATTCATATAGCGAGACGTAGTTATTTATGATTGTCAAATTGCAGTTTCTGCTATACAAGCATATGGATTGTTTATTCGTTTTGATTATGTATGTGTATCAATTTTGGTGTTGTTTAGCTCTAAGTGTATTTATCATTCAGCCTTCTGATAAATAAGAAGGATATTCAATGTGATTCGCATCTGTTATAGTTTTTTGATGAATGATTTTTCTGTATAACAGCAGCAGAGGTGTTGAATTTAGAAGGATATATACAGATAGATAGTTCAAATTTGAAGGATTCTTAGTTTTTCATCTTCTTTATCTTAGGTTAGAAAAAAACCGCTTTCAATCACAGCATCTTGACCTCTGAACTATGGACTCAACCGTGGAAAATGTAGCTTATTCTCCCAAAAATGTATTCATTCTATCTGGGCAAAGCAACATGGCTGGTCGTGGTGGAGTAGAAAAGCATCACTGGGAT</genome_strand>
        <mrna_strand>ACAACTCCTACTAGATCAGTGACCTTACGGCGTCGTTTGTTCATCTTCTCCGCAATTATTCTATTCTTCATTCGGATTCAGTTTCTTTGGAGAATTTACTTGGGTTTTTTGCTTAGTGTTAATTCCCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGAAAAAAACCGCTTTCAATCACAGCATCTTGACCTCTGAACTATGGACTCAACCGTGGAAAATGTAGCTTATTCTCCCAAAAATGTATTCATTCTATCTGGGCAAAGCAACATGGCTGGTCGTGGTGGAGTAGAAAAGCATCACTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341781" ref_strand="+" ref_description="SGN-E341781 [cTOF-9-A14]">
      <seq>cgtggaaaacgtagcttcttctcccaaaaagtcttcattctactctgggcaaagcaacatggctggtcgtggtggagtagaaaagcatcacctgggacggcgttgtaccaaaccgagtgccatccagatgcttctagaattttccgtcttagtgcacacctccattatgaggtggcacgtgagccactccaccatgacattgatgcgaagaagacatgtggtgttggacctggaatgtcatttgcaaatgcaatcaaggaccgagtggaagctattgggttagtgccatgtgctgtaggaggaactgcgataaaggagtgggcacacgggcaacacttgtatgtgaatatgatcaacagagctagagctgccatgagtcatggaggagaaatcaaggcattgctttggtatcaaggagagagtgatacattatctcagcattgcgtcgatacatataaggctaatatggagaagttaatacatgatgttccgtgcttgatttgcatctgccatctctgccaattattcaagttgcaattgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22203" stop="23337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22503" g_stop="23028" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23029" i_stop="23162" i_length="134">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23163" g_stop="23176" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="544" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E341781" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22503" e_stop="23028"/>
          <exon e_start="23163" e_stop="23176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGAAAATGTAGCTTATTCTCCCAAAAATGTATTCATTCTA-TCTGGGCAAAGCAACATGGCTGGTCGTGGTGGAGTAGAAAAGCATCA-CTGGGATGGCGTTGTACCAAA-CGAGTGCCATCCAGATGCTTCTAGAATTTTCCGTCTTAGTGCACACCTCCATTATGAGGTGGCACGTGAGCCACTCCACCATGACATTGATGCGAAGAAGACATGTGGTGTTGGACCTGGAATGTCATTTGCAAATGCAATCAAGGACCGAGTGGAAGCTATTGGGTTAGTGCCATGTGCTGTAGGAGGAACTGCGATAAAGGAGTGGGCACACGGGCAACACTTGTATGTGAATATGATCAACAGAGCTAGAGCTGCCATGAGTCATGGAGGAGAAATCAAGGCATTGCTTTGGTATCAAGGAGAGAGTGATACATTATCTCAGCATTGCGTCGATACATATAAGGCTAATATGGAGAAGTTAATACATGATGTT-CGTGC-TGATTTGCATCTGCCATCTCTGCCAATTATTCAGGTTAGCTAACACAGTTTGCTTCAAGCCTGATGTGAAACTTTTCAAGGATTTTGGCAATTGTGGTTAGGTATTTCGTGGATCAAAGTAGTTGAACATTTTCACATGTTCTTTAACCATATTGCATTGTCGTATAGGTTGCAATTGCATC</genome_strand>
        <mrna_strand>CGTGGAAAACGTAGCTTCTTCTCCCAAAAA-GTCTTCATTCTACTCTGGGCAAAGCAACATGGCTGGTCGTGGTGGAGTAGAAAAGCATCACCTGGGACGGCGTTGTACCAAACCGAGTGCCATCCAGATGCTTCTAGAATTTTCCGTCTTAGTGCACACCTCCATTATGAGGTGGCACGTGAGCCACTCCACCATGACATTGATGCGAAGAAGACATGTGGTGTTGGACCTGGAATGTCATTTGCAAATGCAATCAAGGACCGAGTGGAAGCTATTGGGTTAGTGCCATGTGCTGTAGGAGGAACTGCGATAAAGGAGTGGGCACACGGGCAACACTTGTATGTGAATATGATCAACAGAGCTAGAGCTGCCATGAGTCATGGAGGAGAAATCAAGGCATTGCTTTGGTATCAAGGAGAGAGTGATACATTATCTCAGCATTGCGTCGATACATATAAGGCTAATATGGAGAAGTTAATACATGATGTTCCGTGCTTGATTTGCATCTGCCATCTCTGCCAATTATTCAA......................................................................................................................................GTTGCAATTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368350" ref_strand="+" ref_description="SGN-E368350 [TUS-23-F1]">
      <seq>aacatggctggtcgtggtggagtagaaaagcatcactgggatggcgttgtaccaaacgagtgccatccagatgcttctagaattttccgtcttagtgcacacctccattatgaggtggcacgtgagccactccaccatgacattgatgcgaagaagacatgtggtgttggacctggaatgtcatttgcaaatgcaatcaaggaccgagtggaagctattgggttagtgccatgtgctgtaggaggaactgcgataaaggagtgggcacacgggcaacacttgtatgtgaatatgatcaacagagctagagctgccatgagtcatggaggagaaatcaaggcattgctttggtatcaaggagagagtgatacattatctcagcattgcgtcgatacatataaggctaatatggagaagttaatacatgatgttcgtgctgatttgcatctgccatctctgccaattattcaggttgcaattgcatcaggagatgagaagtatattgaaaagattcgagaagcacaaaaggcaattgatcttccaaatgttgtatgtgttgatgccatgggattgcagctaaaggaagataatcttcatttaactacagaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22258" stop="23602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22558" g_stop="23028" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23029" i_stop="23162" i_length="134">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23163" g_stop="23302" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="611" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E368350" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22558" e_stop="23028"/>
          <exon e_start="23163" e_stop="23302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATGGCTGGTCGTGGTGGAGTAGAAAAGCATCACTGGGATGGCGTTGTACCAAACGAGTGCCATCCAGATGCTTCTAGAATTTTCCGTCTTAGTGCACACCTCCATTATGAGGTGGCACGTGAGCCACTCCACCATGACATTGATGCGAAGAAGACATGTGGTGTTGGACCTGGAATGTCATTTGCAAATGCAATCAAGGACCGAGTGGAAGCTATTGGGTTAGTGCCATGTGCTGTAGGAGGAACTGCGATAAAGGAGTGGGCACACGGGCAACACTTGTATGTGAATATGATCAACAGAGCTAGAGCTGCCATGAGTCATGGAGGAGAAATCAAGGCATTGCTTTGGTATCAAGGAGAGAGTGATACATTATCTCAGCATTGCGTCGATACATATAAGGCTAATATGGAGAAGTTAATACATGATGTTCGTGCTGATTTGCATCTGCCATCTCTGCCAATTATTCAGGTTAGCTAACACAGTTTGCTTCAAGCCTGATGTGAAACTTTTCAAGGATTTTGGCAATTGTGGTTAGGTATTTCGTGGATCAAAGTAGTTGAACATTTTCACATGTTCTTTAACCATATTGCATTGTCGTATAGGTTGCAATTGCATCAGGAGATGAGAAGTATATTGAAAAGATTCGAGAAGCACAAAAGGCAATTGATCTTCCAAATGTTGTATGTGTTGATGCCATGGGATTGCAGCTAAAGGAAGATAATCTTCATTTAACTACAGAGGC</genome_strand>
        <mrna_strand>AACATGGCTGGTCGTGGTGGAGTAGAAAAGCATCACTGGGATGGCGTTGTACCAAACGAGTGCCATCCAGATGCTTCTAGAATTTTCCGTCTTAGTGCACACCTCCATTATGAGGTGGCACGTGAGCCACTCCACCATGACATTGATGCGAAGAAGACATGTGGTGTTGGACCTGGAATGTCATTTGCAAATGCAATCAAGGACCGAGTGGAAGCTATTGGGTTAGTGCCATGTGCTGTAGGAGGAACTGCGATAAAGGAGTGGGCACACGGGCAACACTTGTATGTGAATATGATCAACAGAGCTAGAGCTGCCATGAGTCATGGAGGAGAAATCAAGGCATTGCTTTGGTATCAAGGAGAGAGTGATACATTATCTCAGCATTGCGTCGATACATATAAGGCTAATATGGAGAAGTTAATACATGATGTTCGTGCTGATTTGCATCTGCCATCTCTGCCAATTATTCAG......................................................................................................................................GTTGCAATTGCATCAGGAGATGAGAAGTATATTGAAAAGATTCGAGAAGCACAAAAGGCAATTGATCTTCCAAATGTTGTATGTGTTGATGCCATGGGATTGCAGCTAAAGGAAGATAATCTTCATTTAACTACAGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243539" ref_strand="+" ref_description="SGN-E243539 [cLED-34-A15]">
      <seq>aacatggctggtcgtggtggagtagaaaagcatcactgggatggcgttgtaccaaacgagtgccatccagatgcttctagaattttccgtcttagtgcacacctccattatgaggtggcacgtgagccactccaccatgacattgatgcgaagaagacatgtggtgttggacctggaatgtcatttgcaaatgcaatcaaggaccgagtggaagctattgggttagtgccatgtgctgtaggaggaactgcgataaaggagtgggcacacgggcaacacttgtatgtgaatatgatcaacagagctagagctgccatgagtcatggaggagaaatcaaggcattgctttggtatcaaggagagagtgatacattatctcagcattgcgtcgatacatataaggctaatatggagaagttaatacatgatgttcgtgctgatttgcatctgccatctctgccaattattcacgttgcaattgcatcaggagatgagaagtatattgaaaagattcgagaagcacagaaggcaattgatcttccaaatgttgtatgtgttgatgccatgggattgcagctaaaggaagataatcttcatttaactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22258" stop="23596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22558" g_stop="23028" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23029" i_stop="23162" i_length="134">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23163" g_stop="23296" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="605" r_length="134" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E243539" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22558" e_stop="23028"/>
          <exon e_start="23163" e_stop="23296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATGGCTGGTCGTGGTGGAGTAGAAAAGCATCACTGGGATGGCGTTGTACCAAACGAGTGCCATCCAGATGCTTCTAGAATTTTCCGTCTTAGTGCACACCTCCATTATGAGGTGGCACGTGAGCCACTCCACCATGACATTGATGCGAAGAAGACATGTGGTGTTGGACCTGGAATGTCATTTGCAAATGCAATCAAGGACCGAGTGGAAGCTATTGGGTTAGTGCCATGTGCTGTAGGAGGAACTGCGATAAAGGAGTGGGCACACGGGCAACACTTGTATGTGAATATGATCAACAGAGCTAGAGCTGCCATGAGTCATGGAGGAGAAATCAAGGCATTGCTTTGGTATCAAGGAGAGAGTGATACATTATCTCAGCATTGCGTCGATACATATAAGGCTAATATGGAGAAGTTAATACATGATGTTCGTGCTGATTTGCATCTGCCATCTCTGCCAATTATTCAGGTTAGCTAACACAGTTTGCTTCAAGCCTGATGTGAAACTTTTCAAGGATTTTGGCAATTGTGGTTAGGTATTTCGTGGATCAAAGTAGTTGAACATTTTCACATGTTCTTTAACCATATTGCATTGTCGTATAGGTTGCAATTGCATCAGGAGATGAGAAGTATATTGAAAAGATTCGAGAAGCACAAAAGGCAATTGATCTTCCAAATGTTGTATGTGTTGATGCCATGGGATTGCAGCTAAAGGAAGATAATCTTCATTTAACTAC</genome_strand>
        <mrna_strand>AACATGGCTGGTCGTGGTGGAGTAGAAAAGCATCACTGGGATGGCGTTGTACCAAACGAGTGCCATCCAGATGCTTCTAGAATTTTCCGTCTTAGTGCACACCTCCATTATGAGGTGGCACGTGAGCCACTCCACCATGACATTGATGCGAAGAAGACATGTGGTGTTGGACCTGGAATGTCATTTGCAAATGCAATCAAGGACCGAGTGGAAGCTATTGGGTTAGTGCCATGTGCTGTAGGAGGAACTGCGATAAAGGAGTGGGCACACGGGCAACACTTGTATGTGAATATGATCAACAGAGCTAGAGCTGCCATGAGTCATGGAGGAGAAATCAAGGCATTGCTTTGGTATCAAGGAGAGAGTGATACATTATCTCAGCATTGCGTCGATACATATAAGGCTAATATGGAGAAGTTAATACATGATGTTCGTGCTGATTTGCATCTGCCATCTCTGCCAATTATTCAC......................................................................................................................................GTTGCAATTGCATCAGGAGATGAGAAGTATATTGAAAAGATTCGAGAAGCACAGAAGGCAATTGATCTTCCAAATGTTGTATGTGTTGATGCCATGGGATTGCAGCTAAAGGAAGATAATCTTCATTTAACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243468" ref_strand="+" ref_description="SGN-E243468 [cLED-34-D13]">
      <seq>aacatggctggtcgtggtggagtagaaaagcatcactgggatggcgttgtaccaaacgagtgccatccagatgcttctagaattttccgtcttagtgcacacctccattatgaggtggcacgtgagccactccaccatgacattgatgcgaagaagacatgtggtgttggacctggaatgtcatttgcaaatgcaatcaaggaccgagtggaagctattgggttagtgccatgtgctgtaggaggaactgcgataaaggagtgggcacacgggcaacacttgtatgtgaatatgatcaacagagctagagctgccatgagtcatggaggagaaatcaaggcattgctttggtatcaaggagagagtgatacattatctcagcattgcgtcgatacatataaggctaatatggagaagttaatacatgatgttcgtgctgatttgcatctgccatctctgccaattattcaggttgcaattgcatcaggagatgagaagtatattgaaaagattcgagaagcacaaaaggcaattgatcttccaaatgttgtatgtgttgatgccatgggattgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22258" stop="23568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22558" g_stop="23028" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23029" i_stop="23162" i_length="134">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23163" g_stop="23268" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="577" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E243468" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22558" e_stop="23028"/>
          <exon e_start="23163" e_stop="23268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATGGCTGGTCGTGGTGGAGTAGAAAAGCATCACTGGGATGGCGTTGTACCAAACGAGTGCCATCCAGATGCTTCTAGAATTTTCCGTCTTAGTGCACACCTCCATTATGAGGTGGCACGTGAGCCACTCCACCATGACATTGATGCGAAGAAGACATGTGGTGTTGGACCTGGAATGTCATTTGCAAATGCAATCAAGGACCGAGTGGAAGCTATTGGGTTAGTGCCATGTGCTGTAGGAGGAACTGCGATAAAGGAGTGGGCACACGGGCAACACTTGTATGTGAATATGATCAACAGAGCTAGAGCTGCCATGAGTCATGGAGGAGAAATCAAGGCATTGCTTTGGTATCAAGGAGAGAGTGATACATTATCTCAGCATTGCGTCGATACATATAAGGCTAATATGGAGAAGTTAATACATGATGTTCGTGCTGATTTGCATCTGCCATCTCTGCCAATTATTCAGGTTAGCTAACACAGTTTGCTTCAAGCCTGATGTGAAACTTTTCAAGGATTTTGGCAATTGTGGTTAGGTATTTCGTGGATCAAAGTAGTTGAACATTTTCACATGTTCTTTAACCATATTGCATTGTCGTATAGGTTGCAATTGCATCAGGAGATGAGAAGTATATTGAAAAGATTCGAGAAGCACAAAAGGCAATTGATCTTCCAAATGTTGTATGTGTTGATGCCATGGGATTGCAGC</genome_strand>
        <mrna_strand>AACATGGCTGGTCGTGGTGGAGTAGAAAAGCATCACTGGGATGGCGTTGTACCAAACGAGTGCCATCCAGATGCTTCTAGAATTTTCCGTCTTAGTGCACACCTCCATTATGAGGTGGCACGTGAGCCACTCCACCATGACATTGATGCGAAGAAGACATGTGGTGTTGGACCTGGAATGTCATTTGCAAATGCAATCAAGGACCGAGTGGAAGCTATTGGGTTAGTGCCATGTGCTGTAGGAGGAACTGCGATAAAGGAGTGGGCACACGGGCAACACTTGTATGTGAATATGATCAACAGAGCTAGAGCTGCCATGAGTCATGGAGGAGAAATCAAGGCATTGCTTTGGTATCAAGGAGAGAGTGATACATTATCTCAGCATTGCGTCGATACATATAAGGCTAATATGGAGAAGTTAATACATGATGTTCGTGCTGATTTGCATCTGCCATCTCTGCCAATTATTCAG......................................................................................................................................GTTGCAATTGCATCAGGAGATGAGAAGTATATTGAAAAGATTCGAGAAGCACAAAAGGCAATTGATCTTCCAAATGTTGTATGTGTTGATGCCATGGGATTGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343461" ref_strand="-" ref_description="SGN-E343461 [cTOF-19-A3]">
      <seq>cagcattgcgtcgatacatataaggctaatatggagaagttaatacatgatgttcgtgctgatttgcatctgccatctctgccaattattcaggttgcaattgcatcaggagatgagaagtatattgaaaagattcgagaagcacaaaaggcaattgatcttccaaatgttgtatgtgttgatgccatgggattgcagctaaaggaagataatcttcatttaactacagaggctcaagttaaattaggccaaatgttggctgatgcataccttacccattttgcaccacaagaaccttgtgttgctacatcttgagaaatttgatgtattatgtgtgtgtaaactaaaaattatttaatcctggctcatgaacataacgtgagtggctgagtgctcatataagtatgttattactttgaagtaagtttactcattttctgtatctcttcatttctttactttaaaatgagtatttccttgtctgcattttttcatttagctttcaaatattttcaattgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactctagtctctctctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22636" stop="23893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22936" g_stop="23028" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23029" i_stop="23162" i_length="134">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23163" g_stop="23592" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="523" r_length="430" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="524" polyA_stop="555"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E343461" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343461" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22936" e_stop="23028"/>
          <exon e_start="23163" e_stop="23592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATTGCGTCGATACATATAAGGCTAATATGGAGAAGTTAATACATGATGTTCGTGCTGATTTGCATCTGCCATCTCTGCCAATTATTCAGGTTAGCTAACACAGTTTGCTTCAAGCCTGATGTGAAACTTTTCAAGGATTTTGGCAATTGTGGTTAGGTATTTCGTGGATCAAAGTAGTTGAACATTTTCACATGTTCTTTAACCATATTGCATTGTCGTATAGGTTGCAATTGCATCAGGAGATGAGAAGTATATTGAAAAGATTCGAGAAGCACAAAAGGCAATTGATCTTCCAAATGTTGTATGTGTTGATGCCATGGGATTGCAGCTAAAGGAAGATAATCTTCATTTAACTACAGAGGCTCAAGTTAAATTAGGCCAAATGTTGGCTGATGCATACCTTACCCATTTTGCACCACAAGAACCTTGTGTTGCTACATCTTGAGAAATTTGATGTATTATGTGTGTGTAAACTAAAAATTATTTAATCCTGGCTCATGAACATAACGTGAGTGGCTGAGTGCTCATATAAGTATGTTATTACTTTGAAGTAAGTTTACTCATTTTCTGTATCTCTTCATTTCTTTACTTTAAAATGAGTATTTCCTTGTCTGCATTTCTTCATTTAGCTTTCAAATATTTTCAATTGTACA</genome_strand>
        <mrna_strand>CAGCATTGCGTCGATACATATAAGGCTAATATGGAGAAGTTAATACATGATGTTCGTGCTGATTTGCATCTGCCATCTCTGCCAATTATTCAG......................................................................................................................................GTTGCAATTGCATCAGGAGATGAGAAGTATATTGAAAAGATTCGAGAAGCACAAAAGGCAATTGATCTTCCAAATGTTGTATGTGTTGATGCCATGGGATTGCAGCTAAAGGAAGATAATCTTCATTTAACTACAGAGGCTCAAGTTAAATTAGGCCAAATGTTGGCTGATGCATACCTTACCCATTTTGCACCACAAGAACCTTGTGTTGCTACATCTTGAGAAATTTGATGTATTATGTGTGTGTAAACTAAAAATTATTTAATCCTGGCTCATGAACATAACGTGAGTGGCTGAGTGCTCATATAAGTATGTTATTACTTTGAAGTAAGTTTACTCATTTTCTGTATCTCTTCATTTCTTTACTTTAAAATGAGTATTTCCTTGTCTGCATTTTTTCATTTAGCTTTCAAATATTTTCAATTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373613" ref_strand="+" ref_description="SGN-E373613 [TUS-33-I2](-)">
      <seq>gatttgcatctgccatctctgccaattattcaggttagctaacacagtttgcttcaagcctgatgtgaaacttttcaaggattttggcaattgtggttaggtatttcgtggatcaaagtagttgaacattttcacatgttctttaaccatattgcattgtcgtataggttgcaattgcatcaggagatgagaagtatattgaaaagattcgagaagcacaaaaggcaattgatcttccaaatgttgtatgtgttgatgccatgggattgcagctaaaggaagataatcttcatttaactacagaggctcaagttaaattaggccaaatgttggctgatgcataccttacccattttgcaccacaagaaccttgtgttgctacatcttgagaaatttgatgtattatgtgtgtgtaaactaaaaattatttaatcctggctcatgaacataacgtgagtggctgagtgctcatataagtatgttattactttgaagtaagtttactcattttctgtatctcttcatttctttactttaaaatgagtatttccttgtctgcatttcttcatttagctttcaaatattttcaattgtacaattattgtgacatataatacttatatagttttcaaatatgcaaatttaatttaaaaaaactttaaagatagcaaattgggcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22696" stop="23978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22996" g_stop="23683" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E373613" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22996" e_stop="23683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGCATCTGCCATCTCTGCCAATTATTCAGGTTAGCTAACACAGTTTGCTTCAAGCCTGATGTGAAACTTTTCAAGGATTTTGGCAATTGTGGTTAGGTATTTCGTGGATCAAAGTAGTTGAACATTTTCACATGTTCTTTAACCATATTGCATTGTCGTATAGGTTGCAATTGCATCAGGAGATGAGAAGTATATTGAAAAGATTCGAGAAGCACAAAAGGCAATTGATCTTCCAAATGTTGTATGTGTTGATGCCATGGGATTGCAGCTAAAGGAAGATAATCTTCATTTAACTACAGAGGCTCAAGTTAAATTAGGCCAAATGTTGGCTGATGCATACCTTACCCATTTTGCACCACAAGAACCTTGTGTTGCTACATCTTGAGAAATTTGATGTATTATGTGTGTGTAAACTAAAAATTATTTAATCCTGGCTCATGAACATAACGTGAGTGGCTGAGTGCTCATATAAGTATGTTATTACTTTGAAGTAAGTTTACTCATTTTCTGTATCTCTTCATTTCTTTACTTTAAAATGAGTATTTCCTTGTCTGCATTTCTTCATTTAGCTTTCAAATATTTTCAATTGTACAATTATTGTGACATATAATACTTATATAGTTTTCAAATATGCAAATTTAATTTAAAAAAACTTTAAAGATAGCAAATTGGGCAACAACTTTG</genome_strand>
        <mrna_strand>GATTTGCATCTGCCATCTCTGCCAATTATTCAGGTTAGCTAACACAGTTTGCTTCAAGCCTGATGTGAAACTTTTCAAGGATTTTGGCAATTGTGGTTAGGTATTTCGTGGATCAAAGTAGTTGAACATTTTCACATGTTCTTTAACCATATTGCATTGTCGTATAGGTTGCAATTGCATCAGGAGATGAGAAGTATATTGAAAAGATTCGAGAAGCACAAAAGGCAATTGATCTTCCAAATGTTGTATGTGTTGATGCCATGGGATTGCAGCTAAAGGAAGATAATCTTCATTTAACTACAGAGGCTCAAGTTAAATTAGGCCAAATGTTGGCTGATGCATACCTTACCCATTTTGCACCACAAGAACCTTGTGTTGCTACATCTTGAGAAATTTGATGTATTATGTGTGTGTAAACTAAAAATTATTTAATCCTGGCTCATGAACATAACGTGAGTGGCTGAGTGCTCATATAAGTATGTTATTACTTTGAAGTAAGTTTACTCATTTTCTGTATCTCTTCATTTCTTTACTTTAAAATGAGTATTTCCTTGTCTGCATTTCTTCATTTAGCTTTCAAATATTTTCAATTGTACAATTATTGTGACATATAATACTTATATAGTTTTCAAATATGCAAATTTAATTTAAAAAAACTTTAAAGATAGCAAATTGGGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213725" ref_strand="+" ref_description="SGN-E213725 [cLEC-76-H12]">
      <seq>ataatgatatcaaaagtacaaagcacaccctgaaggaaatgattacacactattcttcccttgggagcccagaggggctggcagtaattaaatcagatacctttgcagatgtagcgaaactttatggagaagaggaatactatgaatatgtctcacaaagccggaggaagcagcaaatgaaataagataagtagttcaccctcactaatcatacaagtcaatacaccaaggtgtcgattaaattggactaccgttataatttataaagcaagagatagaggtggactttgcacatgaggttgttaatgagttctgacttccttcccgtgacgcgactatacccaactgctatcccttgtttgagtttgaagtaacattccacaaccgctgaacgaatccatcagtttgaacaatattcattgtaagctgtacactaaattgaacttagtgggtttacctaacctgcataaaccaacacgatagctatgtatccgttggatcataaaggggtacaattgaagattttgctttattcatgctgcagacatcatttgcaaatttaatatatttatgtttagtgatatgactgaaatcatgtacaactaaaccaatgtggaggtagtataaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25958" stop="23576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25658" g_stop="25544" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25543" i_stop="24389" i_length="1155">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24388" g_stop="23872" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="632" r_length="517" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E213725" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25658" e_stop="25544"/>
          <exon e_start="24388" e_stop="23872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATGATATCAAAAGTACAAAGCACACCCTGAAGGAAATGATTACACACTATTCTTCCCTTGGGAGCCCAGAGGGGCTGGCAGTAATTAAATCAGATACCTTTGCAGATGTAGCGTAAGTTTTTCTATCTGCTGCCGTTTACTTCCACCTGTGGTTACATGTGTTGGGATCAAATTTAGTTGCTGTTCAGTTAGTTTCCAAATTAAGTTGTTCATGTTCTGATAATGTATGACATCTGCTTCACCTCATCCCCTTGCTTCTTTTTTTACATAATTGCGTAGTCTGCTCATTCTAAAAGCTACTCAAAAGTTTGACTCAGTAAAAAGGAGGATTTATATTGTGAAAAGGTGCATGAGGTTCTTAATCTTCTCTTTCATCCTTGTACCATTATTCACTTTGAGATTTGTCCAGCATTGGCAGAGTCCATAAGTCCACAACCTTTACTATTATCATTGTTACAACTCTTCACAAATAAGCTGTCGATGGATATAACTAGCCAAGTAACTATGATTGGACTAATTACGTGTGAAATATGCTATATTTGAGAGGAGGTAACGAGAACAGGGAGAGAAGAACATTATTTCTCTCATTTGGCAAAAAAAGTTACTTATTGGAAGGAGTAACACCTTTTCCAACTCCTCTGTAAGTGGTCGAAGATGAGTTTGAGAGGGCATTTGGAAGATTTTATTCCCAAAGGTTTCTTCCTTGGACAGACAGCTACCTGTGAAGCAGTACTTATCCAAGATGATCTTCCCAATAAGAAGAGCATGAAGATTGTGGTTCTAATAGATAGTTCATGTGTGAATGGTATGAAAATTTTGCTAATCATCTTTCTTTGCTAAATGGGGTGGTGGAACATGTTCCTTTTCGTTTGGGATAGTGTATTACTGATGTCAGTGATGTGAGCATTTATTTGTATGGAGGGGTTATACTGTATGTACCACTGGTTAAGAATTTTGCACACTTCTCGCATGCATCATGTGGCTGCTTCAAAAGAGTGAAATGGGGAATATATGTGCGAAGTCTATATTTAAAAAATTGCGTACCCAGAGAATTTTGATAGTAATAAGTAGGGAGTTGGTTGTATTATCTGTCTTGCATGTTCATTTGCTTCCAAGGCGCCACTGACATAAAGTCACGTCAACAGCCTAAGATTTTATCACTTCTTATATATGAAGTCATCGTCAAACATATTTTCTCCTTCCTCTGGGTGTTTCTTCTGTAGGGCACCTACTAATTTAACTGACTGCATACTTACTGACTTTTCAGGAAACTTTATGGAGAAGAGGAATACTATGAATATGTCTCAGAAAGCCGGAGGAAGCAGCAGATGAAATAAGATAAGTAGTTCACCCTCACTAATCATACAAGTCAATACACCAAGGTGTCGATTAAATTGGACTACCGTTATAATTTATAAAGCAAGAGATAGAGGTGGACTTTGCACATGAGGTTGTTAATGAGTTCTGACTTCCTTCCCGTGACGCGACTATACCCAACTGCTATCCCTTGTTTGAGTTTGAAGTAACATTCCACAACCGCTGAACGAATCCATCAGTTTGAACAATATTCATTGTAGGCTGTACACTAAATTGAACTTAGTGGGTTTACCTAACCTGCATAAACCAACACGATAGCTATGTATCCGTTGGATCATAAGGGGGTACAATTGAAGTTTTTGCTTTATTCATGCTGCAGACATCATTTGCAAATTTAATATATTTATGTTTAGTGATATGACTGAAATCATGTACAACTAAACAAATTTGAAGTTAGTATAAAGTCT</genome_strand>
        <mrna_strand>ATAATGATATCAAAAGTACAAAGCACACCCTGAAGGAAATGATTACACACTATTCTTCCCTTGGGAGCCCAGAGGGGCTGGCAGTAATTAAATCAGATACCTTTGCAGATGTAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTTATGGAGAAGAGGAATACTATGAATATGTCTCACAAAGCCGGAGGAAGCAGCAAATGAAATAAGATAAGTAGTTCACCCTCACTAATCATACAAGTCAATACACCAAGGTGTCGATTAAATTGGACTACCGTTATAATTTATAAAGCAAGAGATAGAGGTGGACTTTGCACATGAGGTTGTTAATGAGTTCTGACTTCCTTCCCGTGACGCGACTATACCCAACTGCTATCCCTTGTTTGAGTTTGAAGTAACATTCCACAACCGCTGAACGAATCCATCAGTTTGAACAATATTCATTGTAAGCTGTACACTAAATTGAACTTAGTGGGTTTACCTAACCTGCATAAACCAACACGATAGCTATGTATCCGTTGGATCATAAAGGGGTACAATTGAAGATTTTGCTTTATTCATGCTGCAGACATCATTTGCAAATTTAATATATTTATGTTTAGTGATATGACTGAAATCATGTACAACTAAACCAATGTGGAGGTAGTATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291358" ref_strand="+" ref_description="SGN-E291358 [cLET-2-H15]">
      <seq>tgatttcagagtatattgtgggataatgatatcaaaagtacaaagcacaccctgaaggaaatgattacacactattcttcccttgggagcccagaggggctggcagtaattaaatcagatacctttgcagatgtagcgaaactttatggagaagaggaatactatgaatatgtctcagaaagccggaggaagcagcagatgaaataagataagtagttcaccctcactaatcatacaagtcaatacaccaaggtgtcgattaaattggactaccgttataatttataaagcaagagatagaggtggactttgcacatgaggttgttaatgagttctgacttccttcccgtgacgcgactatacccaactgctatcccttgtttgagtttgaagtaacattccacaaccgctgaacgaatccatcagtttgaacaatattcattgtaggctgtacactaaattgaacttagtgggtttacctaacctgcataaaccaacacgatagctatgtatccgttggatcataaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25980" stop="23696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25680" g_stop="25544" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25543" i_stop="24389" i_length="1155">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24388" g_stop="23995" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="531" r_length="394" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E291358" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25680" e_stop="25544"/>
          <exon e_start="24388" e_stop="23995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTCAGAGTATATTGTGGGATAATGATATCAAAAGTACAAAGCACACCCTGAAGGAAATGATTACACACTATTCTTCCCTTGGGAGCCCAGAGGGGCTGGCAGTAATTAAATCAGATACCTTTGCAGATGTAGCGTAAGTTTTTCTATCTGCTGCCGTTTACTTCCACCTGTGGTTACATGTGTTGGGATCAAATTTAGTTGCTGTTCAGTTAGTTTCCAAATTAAGTTGTTCATGTTCTGATAATGTATGACATCTGCTTCACCTCATCCCCTTGCTTCTTTTTTTACATAATTGCGTAGTCTGCTCATTCTAAAAGCTACTCAAAAGTTTGACTCAGTAAAAAGGAGGATTTATATTGTGAAAAGGTGCATGAGGTTCTTAATCTTCTCTTTCATCCTTGTACCATTATTCACTTTGAGATTTGTCCAGCATTGGCAGAGTCCATAAGTCCACAACCTTTACTATTATCATTGTTACAACTCTTCACAAATAAGCTGTCGATGGATATAACTAGCCAAGTAACTATGATTGGACTAATTACGTGTGAAATATGCTATATTTGAGAGGAGGTAACGAGAACAGGGAGAGAAGAACATTATTTCTCTCATTTGGCAAAAAAAGTTACTTATTGGAAGGAGTAACACCTTTTCCAACTCCTCTGTAAGTGGTCGAAGATGAGTTTGAGAGGGCATTTGGAAGATTTTATTCCCAAAGGTTTCTTCCTTGGACAGACAGCTACCTGTGAAGCAGTACTTATCCAAGATGATCTTCCCAATAAGAAGAGCATGAAGATTGTGGTTCTAATAGATAGTTCATGTGTGAATGGTATGAAAATTTTGCTAATCATCTTTCTTTGCTAAATGGGGTGGTGGAACATGTTCCTTTTCGTTTGGGATAGTGTATTACTGATGTCAGTGATGTGAGCATTTATTTGTATGGAGGGGTTATACTGTATGTACCACTGGTTAAGAATTTTGCACACTTCTCGCATGCATCATGTGGCTGCTTCAAAAGAGTGAAATGGGGAATATATGTGCGAAGTCTATATTTAAAAAATTGCGTACCCAGAGAATTTTGATAGTAATAAGTAGGGAGTTGGTTGTATTATCTGTCTTGCATGTTCATTTGCTTCCAAGGCGCCACTGACATAAAGTCACGTCAACAGCCTAAGATTTTATCACTTCTTATATATGAAGTCATCGTCAAACATATTTTCTCCTTCCTCTGGGTGTTTCTTCTGTAGGGCACCTACTAATTTAACTGACTGCATACTTACTGACTTTTCAGGAAACTTTATGGAGAAGAGGAATACTATGAATATGTCTCAGAAAGCCGGAGGAAGCAGCAGATGAAATAAGATAAGTAGTTCACCCTCACTAATCATACAAGTCAATACACCAAGGTGTCGATTAAATTGGACTACCGTTATAATTTATAAAGCAAGAGATAGAGGTGGACTTTGCACATGAGGTTGTTAATGAGTTCTGACTTCCTTCCCGTGACGCGACTATACCCAACTGCTATCCCTTGTTTGAGTTTGAAGTAACATTCCACAACCGCTGAACGAATCCATCAGTTTGAACAATATTCATTGTAGGCTGTACACTAAATTGAACTTAGTGGGTTTACCTAACCTGCATAAACCAACACGATAGCTATGTATCCGTTGGATCATAAGGGG</genome_strand>
        <mrna_strand>TGATTTCAGAGTATATTGTGGGATAATGATATCAAAAGTACAAAGCACACCCTGAAGGAAATGATTACACACTATTCTTCCCTTGGGAGCCCAGAGGGGCTGGCAGTAATTAAATCAGATACCTTTGCAGATGTAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTTATGGAGAAGAGGAATACTATGAATATGTCTCAGAAAGCCGGAGGAAGCAGCAGATGAAATAAGATAAGTAGTTCACCCTCACTAATCATACAAGTCAATACACCAAGGTGTCGATTAAATTGGACTACCGTTATAATTTATAAAGCAAGAGATAGAGGTGGACTTTGCACATGAGGTTGTTAATGAGTTCTGACTTCCTTCCCGTGACGCGACTATACCCAACTGCTATCCCTTGTTTGAGTTTGAAGTAACATTCCACAACCGCTGAACGAATCCATCAGTTTGAACAATATTCATTGTAGGCTGTACACTAAATTGAACTTAGTGGGTTTACCTAACCTGCATAAACCAACACGATAGCTATGTATCCGTTGGATCATAAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709611" ref_strand="+" ref_description="SGN-E709611 [FA52CC10]">
      <seq>cggaagagccgtcacaccagtttcgtatcctccaaaaatgtgttatatttgaaggagatctgacttggggtgaggtgatatttttagaggatctgggcaacatagcctccaattcagaagttataatctgagagatgctgttgcctcagaaatacaaaattaatctttgtaggcatgcttccttgtgacacatcaaataatgaacaatctgtatgagaaaagcattgttcatatatagttgatgatggtttttctatctgtttttatgaatatctacaggttgtttctgcttatgttttgcaacatgtaacaactttatcttataggtgcttcatctgtgatggttgcaagaggagccatgtggaatgcttctatattctcttctgagggaaaaacaccatgggaagatgtcaaaagagagtatgtgagaaagagtatattgtgggataatgatatcaaaagtacaaagcacaccctgaaggaaatgattacacactattcttcccttgggagcccagaggggctggcagtaattaaatcagatacctttgcagatctagcgaaactttatggagaagaggaatactatgaatatgtctcagaaagccggaggaagcagcagatgaaataagataagtagttcaccctcactaatcatacaagtcaatacacccaaggtgtcgattacattggactaccgttataatttataaagcaagagatagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26606" stop="23924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26306" g_stop="25874" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25873" i_stop="25672" i_length="202">
            <donor d_prob="0.825" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25671" g_stop="25544" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="561" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25543" i_stop="24389" i_length="1155">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24388" g_stop="24224" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="727" r_length="166" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E709611" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26306" e_stop="25874"/>
          <exon e_start="25671" e_stop="25544"/>
          <exon e_start="24388" e_stop="24224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGAGCCGTCACACCAGTTTCGGATCCTCCAAAAATGTGTTATATTTGAAGGAGATCTGACTTGGGGTGAGGTGATATTTTTAAAGGATCTGGGCAACATAGCCTCCAATTCAGAAGTTATAATCTGAGAGATGCTGTTGCCTCAGAAATACAAAATTAATCTTTGTAGGCATGCTTCCTTGTGACACATCAAATAATGAACAATCTGTATGAGAAAAGCATTTTTCATATATAGTTGATGATGGTTTTTCTATCTGTTTTTATGAATATCTACAGGTTGTTTCTGCTTATGTTTTGCAACATGTAACAACTTTATCTTATAGGTGCTTCATCTGTGATGGTTGCAAGAGGAGCCATGTGGAATGCTTCTATATTCTCTTCTGAGGGAAAAACACCATGGGAAGATGTCAAAAGAGAGTATGTGAGAAAGGTATTCGGCCTGTGAACTAGATGTGAATCAATCTCTTATTACATGTTAAATTAACTCTAAATTAAGTAGCCACTTTGTCCATCCAGCATATAAATGAAATAGACTAAAATATATCCAGCATTTGTTTGAAATTGAAGTCATTGACTTCCTATATGCTTTTCACTGCAAATGTAAGTGACAGGTCTGGGTGCTTTGATTTCAGAGTATATTGTGGGATAATGATATCAAAAGTACAAAGCACACCCTGAAGGAAATGATTACACACTATTCTTCCCTTGGGAGCCCAGAGGGGCTGGCAGTAATTAAATCAGATACCTTTGCAGATGTAGCGTAAGTTTTTCTATCTGCTGCCGTTTACTTCCACCTGTGGTTACATGTGTTGGGATCAAATTTAGTTGCTGTTCAGTTAGTTTCCAAATTAAGTTGTTCATGTTCTGATAATGTATGACATCTGCTTCACCTCATCCCCTTGCTTCTTTTTTTACATAATTGCGTAGTCTGCTCATTCTAAAAGCTACTCAAAAGTTTGACTCAGTAAAAAGGAGGATTTATATTGTGAAAAGGTGCATGAGGTTCTTAATCTTCTCTTTCATCCTTGTACCATTATTCACTTTGAGATTTGTCCAGCATTGGCAGAGTCCATAAGTCCACAACCTTTACTATTATCATTGTTACAACTCTTCACAAATAAGCTGTCGATGGATATAACTAGCCAAGTAACTATGATTGGACTAATTACGTGTGAAATATGCTATATTTGAGAGGAGGTAACGAGAACAGGGAGAGAAGAACATTATTTCTCTCATTTGGCAAAAAAAGTTACTTATTGGAAGGAGTAACACCTTTTCCAACTCCTCTGTAAGTGGTCGAAGATGAGTTTGAGAGGGCATTTGGAAGATTTTATTCCCAAAGGTTTCTTCCTTGGACAGACAGCTACCTGTGAAGCAGTACTTATCCAAGATGATCTTCCCAATAAGAAGAGCATGAAGATTGTGGTTCTAATAGATAGTTCATGTGTGAATGGTATGAAAATTTTGCTAATCATCTTTCTTTGCTAAATGGGGTGGTGGAACATGTTCCTTTTCGTTTGGGATAGTGTATTACTGATGTCAGTGATGTGAGCATTTATTTGTATGGAGGGGTTATACTGTATGTACCACTGGTTAAGAATTTTGCACACTTCTCGCATGCATCATGTGGCTGCTTCAAAAGAGTGAAATGGGGAATATATGTGCGAAGTCTATATTTAAAAAATTGCGTACCCAGAGAATTTTGATAGTAATAAGTAGGGAGTTGGTTGTATTATCTGTCTTGCATGTTCATTTGCTTCCAAGGCGCCACTGACATAAAGTCACGTCAACAGCCTAAGATTTTATCACTTCTTATATATGAAGTCATCGTCAAACATATTTTCTCCTTCCTCTGGGTGTTTCTTCTGTAGGGCACCTACTAATTTAACTGACTGCATACTTACTGACTTTTCAGGAAACTTTATGGAGAAGAGGAATACTATGAATATGTCTCAGAAAGCCGGAGGAAGCAGCAGATGAAATAAGATAAGTAGTTCACCCTCACTAATCATACAAGTCAATACA-CCAAGGTGTCGATTAAATTGGACTACCGTTATAATTTATAAAGCAAGAGATAGAG</genome_strand>
        <mrna_strand>CGGAAGAGCCGTCACACCAGTTTCGTATCCTCCAAAAATGTGTTATATTTGAAGGAGATCTGACTTGGGGTGAGGTGATATTTTTAGAGGATCTGGGCAACATAGCCTCCAATTCAGAAGTTATAATCTGAGAGATGCTGTTGCCTCAGAAATACAAAATTAATCTTTGTAGGCATGCTTCCTTGTGACACATCAAATAATGAACAATCTGTATGAGAAAAGCATTGTTCATATATAGTTGATGATGGTTTTTCTATCTGTTTTTATGAATATCTACAGGTTGTTTCTGCTTATGTTTTGCAACATGTAACAACTTTATCTTATAGGTGCTTCATCTGTGATGGTTGCAAGAGGAGCCATGTGGAATGCTTCTATATTCTCTTCTGAGGGAAAAACACCATGGGAAGATGTCAAAAGAGAGTATGTGAGAAAG..........................................................................................................................................................................................................AGTATATTGTGGGATAATGATATCAAAAGTACAAAGCACACCCTGAAGGAAATGATTACACACTATTCTTCCCTTGGGAGCCCAGAGGGGCTGGCAGTAATTAAATCAGATACCTTTGCAGATCTAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTTATGGAGAAGAGGAATACTATGAATATGTCTCAGAAAGCCGGAGGAAGCAGCAGATGAAATAAGATAAGTAGTTCACCCTCACTAATCATACAAGTCAATACACCCAAGGTGTCGATTACATTGGACTACCGTTATAATTTATAAAGCAAGAGATAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709537" ref_strand="+" ref_description="SGN-E709537 [FA52BD10]">
      <seq>cattagccgtcacaccatgtttcgtatcctccaacaatgtgctatatttgaaggagatctgacttggggtgaggtgatatttttagaggatctgggcaacatagcctccaattcaaaagttataatctgagagatgctgttgcctcagaaatacaaaattaatctttgtacgcatgcttccttgtgacacatcaaataatgaacaatctgtatgacaaaagcattgttcatatatagttgatgatggtttttctatctgtttttatgaatatctacaggttgtttctgcttatgttttgcaacatgtaacaactttatcttataggtgcttcatctgtgatggctgcaagaggagccatgcggaatgcttctatattctcttctgagggaaaaacaccatgggaagatgtctaaagagagtatgtgagaaagagtatattgtgggatactgatatcaaaagtacaaagcacaccctgaaggaaatgattacacactattcttcccttgggagcccataggggctggcagcaattaaatcacatacctttgctgatctagcgaaactttatggacaagaggaatactatgaatatgtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26600" stop="24050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26304" g_stop="25874" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25873" i_stop="25672" i_length="202">
            <donor d_prob="0.825" d_score="0.98"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25671" g_stop="25544" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="560" r_length="128" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25543" i_stop="24389" i_length="1155">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24388" g_stop="24350" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="599" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E709537" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26304" e_stop="25874"/>
          <exon e_start="25671" e_stop="25544"/>
          <exon e_start="24388" e_stop="24350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGCCGTCACACCA-GTTTCGGATCCTCCAAAAATGTGTTATATTTGAAGGAGATCTGACTTGGGGTGAGGTGATATTTTTAAAGGATCTGGGCAACATAGCCTCCAATTCAGAAGTTATAATCTGAGAGATGCTGTTGCCTCAGAAATACAAAATTAATCTTTGTAGGCATGCTTCCTTGTGACACATCAAATAATGAACAATCTGTATGAGAAAAGCATTTTTCATATATAGTTGATGATGGTTTTTCTATCTGTTTTTATGAATATCTACAGGTTGTTTCTGCTTATGTTTTGCAACATGTAACAACTTTATCTTATAGGTGCTTCATCTGTGATGGTTGCAAGAGGAGCCATGTGGAATGCTTCTATATTCTCTTCTGAGGGAAAAACACCATGGGAAGATGTCAAAAGAGAGTATGTGAGAAAGGTATTCGGCCTGTGAACTAGATGTGAATCAATCTCTTATTACATGTTAAATTAACTCTAAATTAAGTAGCCACTTTGTCCATCCAGCATATAAATGAAATAGACTAAAATATATCCAGCATTTGTTTGAAATTGAAGTCATTGACTTCCTATATGCTTTTCACTGCAAATGTAAGTGACAGGTCTGGGTGCTTTGATTTCAGAGTATATTGTGGGATAATGATATCAAAAGTACAAAGCACACCCTGAAGGAAATGATTACACACTATTCTTCCCTTGGGAGCCCAGAGGGGCTGGCAGTAATTAAATCAGATACCTTTGCAGATGTAGCGTAAGTTTTTCTATCTGCTGCCGTTTACTTCCACCTGTGGTTACATGTGTTGGGATCAAATTTAGTTGCTGTTCAGTTAGTTTCCAAATTAAGTTGTTCATGTTCTGATAATGTATGACATCTGCTTCACCTCATCCCCTTGCTTCTTTTTTTACATAATTGCGTAGTCTGCTCATTCTAAAAGCTACTCAAAAGTTTGACTCAGTAAAAAGGAGGATTTATATTGTGAAAAGGTGCATGAGGTTCTTAATCTTCTCTTTCATCCTTGTACCATTATTCACTTTGAGATTTGTCCAGCATTGGCAGAGTCCATAAGTCCACAACCTTTACTATTATCATTGTTACAACTCTTCACAAATAAGCTGTCGATGGATATAACTAGCCAAGTAACTATGATTGGACTAATTACGTGTGAAATATGCTATATTTGAGAGGAGGTAACGAGAACAGGGAGAGAAGAACATTATTTCTCTCATTTGGCAAAAAAAGTTACTTATTGGAAGGAGTAACACCTTTTCCAACTCCTCTGTAAGTGGTCGAAGATGAGTTTGAGAGGGCATTTGGAAGATTTTATTCCCAAAGGTTTCTTCCTTGGACAGACAGCTACCTGTGAAGCAGTACTTATCCAAGATGATCTTCCCAATAAGAAGAGCATGAAGATTGTGGTTCTAATAGATAGTTCATGTGTGAATGGTATGAAAATTTTGCTAATCATCTTTCTTTGCTAAATGGGGTGGTGGAACATGTTCCTTTTCGTTTGGGATAGTGTATTACTGATGTCAGTGATGTGAGCATTTATTTGTATGGAGGGGTTATACTGTATGTACCACTGGTTAAGAATTTTGCACACTTCTCGCATGCATCATGTGGCTGCTTCAAAAGAGTGAAATGGGGAATATATGTGCGAAGTCTATATTTAAAAAATTGCGTACCCAGAGAATTTTGATAGTAATAAGTAGGGAGTTGGTTGTATTATCTGTCTTGCATGTTCATTTGCTTCCAAGGCGCCACTGACATAAAGTCACGTCAACAGCCTAAGATTTTATCACTTCTTATATATGAAGTCATCGTCAAACATATTTTCTCCTTCCTCTGGGTGTTTCTTCTGTAGGGCACCTACTAATTTAACTGACTGCATACTTACTGACTTTTCAGGAAACTTTATGGAGAAGAGGAATACTATGAATATGTCTC</genome_strand>
        <mrna_strand>CATTAGCCGTCACACCATGTTTCGTATCCTCCAACAATGTGCTATATTTGAAGGAGATCTGACTTGGGGTGAGGTGATATTTTTAGAGGATCTGGGCAACATAGCCTCCAATTCAAAAGTTATAATCTGAGAGATGCTGTTGCCTCAGAAATACAAAATTAATCTTTGTACGCATGCTTCCTTGTGACACATCAAATAATGAACAATCTGTATGACAAAAGCATTGTTCATATATAGTTGATGATGGTTTTTCTATCTGTTTTTATGAATATCTACAGGTTGTTTCTGCTTATGTTTTGCAACATGTAACAACTTTATCTTATAGGTGCTTCATCTGTGATGGCTGCAAGAGGAGCCATGCGGAATGCTTCTATATTCTCTTCTGAGGGAAAAACACCATGGGAAGATGTCTAAAGAGAGTATGTGAGAAAG..........................................................................................................................................................................................................AGTATATTGTGGGATACTGATATCAAAAGTACAAAGCACACCCTGAAGGAAATGATTACACACTATTCTTCCCTTGGGAGCCCATAGGGGCTGGCAGCAATTAAATCACATACCTTTGCTGATCTAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTTATGGACAAGAGGAATACTATGAATATGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238284" ref_strand="+" ref_description="SGN-E238284 [cLED-22-N4]">
      <seq>aactcttcacaaataagctgtcgatggatataactagccaagtaactatgattggactaattacgtgtgaaatatgctatatttgagaggaggtaacgagaacagggagagaagaacattatttctctcatttggcaaaaaaagttacttattggaaggagtaacaccttttccaactcctctgtaagtggtcgaagatgagtttgagagggcatttggaagattttattcccaaaggtttcttccttggacagacagctacctgtgaagcagtacttatccaagatgatcttcccaataagaagagcatgaagattgtggttctaatagatagttcatgtgtgaatggtatgaaaattttgctaatcatctttctttgctaaatggggtggtggaacatgttccttttcgtttgggatagtgtattactgatgtcagtgatgtgagcatttatttgtatggaggggttatactgtatgtaccactggttaagaattttgcacacttctcgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25498" stop="24384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25198" g_stop="24684" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E238284" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25198" e_stop="24684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTCACAAATAAGCTGTCGATGGATATAACTAGCCAAGTAACTATGATTGGACTAATTACGTGTGAAATATGCTATATTTGAGAGGAGGTAACGAGAACAGGGAGAGAAGAACATTATTTCTCTCATTTGGCAAAAAAAGTTACTTATTGGAAGGAGTAACACCTTTTCCAACTCCTCTGTAAGTGGTCGAAGATGAGTTTGAGAGGGCATTTGGAAGATTTTATTCCCAAAGGTTTCTTCCTTGGACAGACAGCTACCTGTGAAGCAGTACTTATCCAAGATGATCTTCCCAATAAGAAGAGCATGAAGATTGTGGTTCTAATAGATAGTTCATGTGTGAATGGTATGAAAATTTTGCTAATCATCTTTCTTTGCTAAATGGGGTGGTGGAACATGTTCCTTTTCGTTTGGGATAGTGTATTACTGATGTCAGTGATGTGAGCATTTATTTGTATGGAGGGGTTATACTGTATGTACCACTGGTTAAGAATTTTGCACACTTCTCGCATG</genome_strand>
        <mrna_strand>AACTCTTCACAAATAAGCTGTCGATGGATATAACTAGCCAAGTAACTATGATTGGACTAATTACGTGTGAAATATGCTATATTTGAGAGGAGGTAACGAGAACAGGGAGAGAAGAACATTATTTCTCTCATTTGGCAAAAAAAGTTACTTATTGGAAGGAGTAACACCTTTTCCAACTCCTCTGTAAGTGGTCGAAGATGAGTTTGAGAGGGCATTTGGAAGATTTTATTCCCAAAGGTTTCTTCCTTGGACAGACAGCTACCTGTGAAGCAGTACTTATCCAAGATGATCTTCCCAATAAGAAGAGCATGAAGATTGTGGTTCTAATAGATAGTTCATGTGTGAATGGTATGAAAATTTTGCTAATCATCTTTCTTTGCTAAATGGGGTGGTGGAACATGTTCCTTTTCGTTTGGGATAGTGTATTACTGATGTCAGTGATGTGAGCATTTATTTGTATGGAGGGGTTATACTGTATGTACCACTGGTTAAGAATTTTGCACACTTCTCGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366783" ref_strand="+" ref_description="SGN-E366783 [cLPT-6-I23]">
      <seq>gagccatgtggaatgcttctattttctcttctgagggaaaaacaccatgggaagatgtcaaaagagagtatgtgagaaagagtatattgtgggataatgatatcaaaagtacaaagcacaccctgaaggaaatgataacacactattcttcccttgggcgcccggaggggctggcagtaattaaatcaaataccttggcagatctggcgtaagtttttatatcttctgccgttacttccacccgtggttacatgtgttgggatcaaatttagttgctgttcagttagtttccaaattaagttgttcatgttctgataatgtatgacatctgcttcacctcatccccttgcttgtttttttttacataattgcgtagtctgctcattctaaaagctactcaaaagtttgactcagtaaaaacgaggatttatattgtgaaaaggtgcatgaggttcttaatcttctctttcatccttgtattattcactttgagatttgtccaacattggcagagtccataagtccacaacctttactattatcattgttacaactcttcacatataagctgtcgatggatataactagccaattaactatgattggactaattagttgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26253" stop="24827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25953" g_stop="25874" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25873" i_stop="25672" i_length="202">
            <donor d_prob="0.825" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25671" g_stop="25129" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="621" r_length="541" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E366783" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25953" e_stop="25874"/>
          <exon e_start="25671" e_stop="25129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCCATGTGGAATGCTTCTATATTCTCTTCTGAGGGAAAAACACCATGGGAAGATGTCAAAAGAGAGTATGTGAGAAAGGTATTCGGCCTGTGAACTAGATGTGAATCAATCTCTTATTACATGTTAAATTAACTCTAAATTAAGTAGCCACTTTGTCCATCCAGCATATAAATGAAATAGACTAAAATATATCCAGCATTTGTTTGAAATTGAAGTCATTGACTTCCTATATGCTTTTCACTGCAAATGTAAGTGACAGGTCTGGGTGCTTTGATTTCAGAGTATATTGTGGGATAATGATATCAAAAGTACAAAGCACACCCTGAAGGAAATGATTACACACTATTCTTCCCTTGGGAGCCCAGAGGGGCTGGCAGTAATTAAATCAGATACCTTTGCAGATGTAGCGTAAGTTTTTCTATCTGCTGCCGTTTACTTCCACCTGTGGTTACATGTGTTGGGATCAAATTTAGTTGCTGTTCAGTTAGTTTCCAAATTAAGTTGTTCATGTTCTGATAATGTATGACATCTGCTTCACCTCATCCCCTTGC-T-TCTTTTTTTACATAATTGCGTAGTCTGCTCATTCTAAAAGCTACTCAAAAGTTTGACTCAGTAAAAAGGAGGATTTATATTGTGAAAAGGTGCATGAGGTTCTTAATCTTCTCTTTCATCCTTGTACCATTATTCACTTTGAGATTTGTCCAGCATTGGCAGAGTCCATAAGTCCACAACCTTTACTATTATCATTGTTACAACTCTTCACAAATAAGCTGTCGATGGATATAACTAGCCAAGTAACTATGATTGGACTAATTACGTGTGA</genome_strand>
        <mrna_strand>GAGCCATGTGGAATGCTTCTATTTTCTCTTCTGAGGGAAAAACACCATGGGAAGATGTCAAAAGAGAGTATGTGAGAAAG..........................................................................................................................................................................................................AGTATATTGTGGGATAATGATATCAAAAGTACAAAGCACACCCTGAAGGAAATGATAACACACTATTCTTCCCTTGGGCGCCCGGAGGGGCTGGCAGTAATTAAATCAAATACCTTGGCAGATCTGGCGTAAGTTTTTATATCTTCTGCCG-TTACTTCCACCCGTGGTTACATGTGTTGGGATCAAATTTAGTTGCTGTTCAGTTAGTTTCCAAATTAAGTTGTTCATGTTCTGATAATGTATGACATCTGCTTCACCTCATCCCCTTGCTTGTTTTTTTTTACATAATTGCGTAGTCTGCTCATTCTAAAAGCTACTCAAAAGTTTGACTCAGTAAAAACGAGGATTTATATTGTGAAAAGGTGCATGAGGTTCTTAATCTTCTCTTTCATCCTTGT---ATTATTCACTTTGAGATTTGTCCAACATTGGCAGAGTCCATAAGTCCACAACCTTTACTATTATCATTGTTACAACTCTTCACATATAAGCTGTCGATGGATATAACTAGCCAATTAACTATGATTGGACTAATTAGTTGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313069" ref_strand="+" ref_description="SGN-E313069 [cTOA-14-H19]">
      <seq>gattacagaaacaagctagtcttggctccaatggtccgagtgggtacattgccgtttaggctgcttgctgcccaatatggagctgacataacctatggagaggagattattgatcataagatcatcaaatgtgagcggcgagttaatggtgtaaggatgtagcagcagttgacgtaaacatgggatgccccaagtcattctctattagtggaggcatgggtgctgcactgttgagcaaaccagagctcatccatgatattttgacaacattgcgaaggaacttggatgtaccaataacatgcaaaattaggttattaaaagatccgcaagatacagtggaattggcacgacgaattgagatgactggtgtctctgctcttgctgtccatggaaagaaagttccagataggccaagagatcctgcaaagtggaatgagattgctgatgttgctgccgctctctctattccagttatagcaaatggtgatgtttttgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31434" stop="26418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31134" g_stop="31093" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31092" i_stop="30906" i_length="187">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30905" g_stop="30800" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="148" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30799" i_stop="27922" i_length="2878">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27921" g_stop="27813" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="257" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27812" i_stop="27711" i_length="102">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.186" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27710" g_stop="27574" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="394" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27573" i_stop="26823" i_length="751">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26822" g_stop="26718" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="499" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E313069" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31134" e_stop="31093"/>
          <exon e_start="30905" e_stop="30800"/>
          <exon e_start="27921" e_stop="27813"/>
          <exon e_start="27710" e_stop="27574"/>
          <exon e_start="26822" e_stop="26718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTACAGAAACAAGCTAGTCTTGGCTCCAATGGTCCGAGTGGTAAGTACCTTCAAGTGAATTTAAATTAGAGCAGTCCTGTTTTGGTACTTCATGTTCCCATTTCTAGATGTGTGTGGCTCTTTTTAAATTCACCAGGAAGCATAGTTAAAACTGCTCTTAATGTGTTTTTTACTTTACTAAATGATGCTTTAAATGCCCATGTGTATTCTTCATTGCTTTTGGCCAGGGTACATTGCCGTTTAGGCTGCTTGCTGCCCAATATGGAGCTGACATAACCTATGGAGAGGAGATTATTGATCATAAGATCATCAAATGTGAGCGGCGAGTTAATGGTAATTTCTTGTTCATCCTTTTGCATCCTTCGTCTGGATTATCCTTGAACATTTTTCATGTAACATGTAAACTAAATACATACTACCTCTATTGAAAGAATGAAACGAACAGTTCCTAAAAATGCCAAGGCACCAATTACGTGACCACTATTGTTCTTATTCAAGACCCTTTCTTTGATGAATATAACCTTGGTTTGAATGTGATGTATATGTCAATTTGAGTACTTCTATATTTCTAATGGATTATCAGATCTTATGCTTTTATGTTAATGAAAGAAGGATGTGAACTCTTAATTTCATCATGTTATGGCTCTCTAGTCTCTATCAAGAAAATGAGCCTTTTATTTGAAGAAATTTGATAACGAGAAGTTTTACATGGATCTGTGGCTTAAATGGAATATTTGAGAGATGATTGAGCATTTACTGATGATAGTTAATATCGGAACGTTAAAACCTTGAACTGAATATTTTAGTGTGAGTTGATTGCCCCTCGAATACCAAACAAGGATTTGTAAATTATTATATAGGTCGTGTACAGTGGTGGAGCCACCTTGTTCTCACGGGGTTCATCCGAACCCCCTTCACCGGAAAATTAGTACTATTTATATATGGTTAAAATTATTTTTTAGGTATACATAGTAAATGTCGAACCCCCTCGACTATTTCGTTTGTCTATTTCTTCAGATTTTGAACCCCCTTATTGAAAAAATCTTCATGTATATTGACATAGTATAGATGACATCTGATACCTGATTCAGTAGCTTTCCAAGCGGAGAAGATTTATTCAAAGTCATTACTCTGTAAAGGCTTTATGACTTGCTGTATATGTTGTTGACTTTGCAGTTAGCATTATGCTTTATGCCTTGCATTTTACTTCATATTTTTATTTTTAGGTATTATGAGCATAGATGAATAGGATTCACAGTCACTTATGAAAAAGAAACGAAAAGATAAATATCATAGTGAAGCCTGCCTTTAGATGCAGGTTACCTAGTACATTTGAGATGGCAAAAGAAAAAAGTTGCTAAACTCGATGCTTCTAAAATATTTCTCATGAGTTTTACCCCTTATTCCTTAGATGTCTTAGGGACTACTGACATAGTGGAGAAGGGAACTGATAATGTTGTTTTCAGAACGTGCCCCGAGGAGAGAAATCGAGTTGTATTTCAGATGGGCACTTCTGATGCCATGAGGGCTCTCAAAGCTGCTGAAATAGTGTATGTTCCATTCAGTTCTTTCTTTTTTCCTCCCTTATCATAACTAATTTTCGTACTTTAAATCCATCTGCTCTCCTCCCCCCCCCCCTCCCCCCCCCTCACGCACACACAATCTGTTTTTCACATGGTCATACACAGAGTCTTATAGACAGACAGATTGGATTGGATTCCTATGATGAAATCTCGCTCTTGTTTCCACTTGTTTTATTTTCAATATGCGTCTTCTAGCATTTTTGGTGGTATTTCTTTTTAAGTAATGTGATGCATTATGTAGTATATCTCTGTTGGTTATGTAAGAACTCGTATGGTTGAGTTTATGAACAGACAAGCAGTTTCTCTAGCGAAACCAGATACCCTCACCTCCATCCACACCCAAAAAAGGCAAAAAAGACAAACATTCATTTTGAGCAAATACAAATGCCATTAATTAATAACTCCTTTCTGCCGGTTTGGGGTTCCTAATAGGTTGTGTCATTCTCTTGCTGAGTATAGTGGCACCTGCATAAGTCTTCTTGTGCCATGAAACGTTTTCTTGATAACAACAGATATTATTGGGGGGTTTTACAAGGGGTGAGGTAGAGTATGTATGTCCTAATTTCCATACTGAACATCAAGGTTAGAAGTGGTCTTGTTGGATTTAAGAGGTAGATTTCATATATTCCAGTTCTCTATATTATACATCAATGTTAGAAATGTTCTTGTTGGAATTCTTTACTAATTTGCTTGAGGAACTGTCCTTTTTCTTTGATGAAGTAATGTGTTTTGTTAAGGAGCATCTAGAAGATGCAACTTACTAAAGAAATCTGCTAGCAATTACTAGTAAAGTGAAGTTGCAATTCCTTATACAAAGTGCTACCCTAAGCGTAGGGAGCTTACAATCTGAAAAAATGGTCGGGGCTAGTTACAGACTCATAGGTGTCAATTTAATCAGGCAAAACAGACTTAGCAGTCACTTTGCTTTGAGGGAAGAGTTTTGAGTTGAAATACCATCAAAGCATCTACTGTTTCTTTCAATCCACAGACACCAAAAAATTTATTCCAGGAATCATTACCCGGATCTTCTTGATGGCCTTGTCAACTCTCAAGTGGCAGTGTGGCACCAGCTTGAATAAGCTTCCTTCACATGCACAACATCACCCATTTCAGCCCAAGGAGGAAAAATAGAAATTATTGAGGAACTGTTTTTGAAGCTGGACTCTCTGCTTTTGCTTTTCATTTTGTCAAATGATGTCATCGTTTTCTGCATTGGAAGTCTAGATTTTTAAGTTTTTCATGTTGTTAGCAGTATTTAGAATCGACTTTTCTGACATTAATTGGATGATGGATATAGCTGATGTTCGTTTATAAATAACAGGCTTGTCAGAGTTAAATTTATTAATGTTGAACTGCAACAAGCTGCAGTGATATGAATTCGCTTCTCCAACAATTTTCTCTATATTGAATAGCTATCATAATATTCTGTGAATTGCATTCTTATCATGATTCTTAATATACTTTCTTAAGATAGTGAAGAAACTTCAAAGCACATGCTTGAGTTTCTTTGCTCTTTTTAGGTCTTTACTTCTGACTTGGTCATGAAAGCTTAAACCAGCAATTATGCTCGATATGGGTAGGAAGTTAGTGCATCTGATCGAATTATTTGATGGTCTGTCCCTTTTCAGGTGTAAGGATGTAGCAGCAGTTGACGTAAACATGGGATGCCCCAAGTCATTCTCTATTAGTGGAGGCATGGGTGCTGCACTGTTGAGCAAACCAGAGCTCATCCATGATGTATGCAATTACTGTTGCTCCTTCATCAGTATCCGAGTTTCCTTCTAATATAGCATAGGAGTGCATGTCCTGTTCATAATGCTTCCCTTCTTCTGAACTCAGATTTTGACAACATTGCGAAGGAACTTGGATGTACCAATAACATGCAAAATTAGGTTATTAAAAGATCCGCAAGATACAGTGGAATTGGCACGACGAATTGAGATGACTGGTGTCTCTGCTCTTGCTGTCCATGGAAGGTACATGATTTCTGTATATCTGCTTCTCATGTTTTTTATAAACTTAACCTTGTGCTCTGTCATCAATTAAGCCTTTGTATATCCAGTAATCCAGATTCCTACTTTGATGGTCAAGTTATTTCATATAGTTGTTGGAGTATTTTTGTGAAACGAGGTGGGGCTTGCTGTAGATTCAAACAGTCCACCTTAGAAGCGAGAGAAGAACCATTTAGTCTGCTTCTTGGTTATGTTGGAAAGTATTGTCTCTTCTGTATGTTATTGCTACTTTCCCCGATTACTCTCTCCTTTCACTTTTTGTGATTGTGAATTTTAACTAATATTGAAGTTTCATTGTGAAGATGCCAATTCATGAATTACTAACCACATCTAGGGTTAACAGGATTGTTTTAGGTTCTGATCTTCCTTCCATTTGCTGAGGGGTGGGTTCCATGAATTATGTTGTGCTATCTTTATGTGTAGCCAGTGCTAGAAGATTTAAAATACAGAAATTGAACATGCTATACTTGGAAACGATGTCAAAACTGATTTATTGAGGGTGCAATTGATAATTCTCTCGCAGCTACTCTTACTATGTCTCTGTTACACAGAATATGGTCACGGCTCATTTTTGTTTGTTTTTTGTTTGGGATAAGGAGTCTTCACTGGTTGCTTGTTTGAGCTTCCTCCTATTTTGGGCTTTTAACTTGAAGTGGAGTGATATTAGTATTTCCTCTGACTAGCAAATGTTGCATGATTGTTGATTGAACTACAGGAAAGTTCCAGATAGGCCAAGAGATCCTGCAAAGTGGAATGAGATTGCTGATGTTGCTGCCGCTCTCTCTATTCCAGTTATAGCAAATGGTGATGTTTTTGAATA</genome_strand>
        <mrna_strand>GATTACAGAAACAAGCTAGTCTTGGCTCCAATGGTCCGAGTG...........................................................................................................................................................................................GGTACATTGCCGTTTAGGCTGCTTGCTGCCCAATATGGAGCTGACATAACCTATGGAGAGGAGATTATTGATCATAAGATCATCAAATGTGAGCGGCGAGTTAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAGGATGTAGCAGCAGTTGACGTAAACATGGGATGCCCCAAGTCATTCTCTATTAGTGGAGGCATGGGTGCTGCACTGTTGAGCAAACCAGAGCTCATCCATGAT......................................................................................................ATTTTGACAACATTGCGAAGGAACTTGGATGTACCAATAACATGCAAAATTAGGTTATTAAAAGATCCGCAAGATACAGTGGAATTGGCACGACGAATTGAGATGACTGGTGTCTCTGCTCTTGCTGTCCATGGAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTTCCAGATAGGCCAAGAGATCCTGCAAAGTGGAATGAGATTGCTGATGTTGCTGCCGCTCTCTCTATTCCAGTTATAGCAAATGGTGATGTTTTTGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365632" ref_strand="+" ref_description="SGN-E365632 [cLPT-12-D6]">
      <seq>gctcgtcaattgcaaccactccgatactccgtcgtggttggtcgccgccggctgggaaaattcttcctctcttttcaagtcaagcatcgcactaacttatctgcctcgtcagaatgatggattacagaaacaggctagtcttggctccaatggtccgagtgggtacattgccgtttaggctgcttgctgcccaatatggagctgacataacctatggagaggagattattgatcataagatcatcaaatgtgagcggcgagttaatgaacgtgccccgaggagagaaatcgagttgtatttcagatgggcacttctgatgccatgagggctctcaaagctgctgaaatagtgtgtaaagatgtagcagcagtggacgtaaacatgggatgccccaagtcattctctattactggaggcatgggtgctgcactgttgagcaaaccagagctcatccatgatattttgacaacattgcgaaggaacttggatgtaccaataacatgcaaaattaggttattaaaagatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32400" stop="27343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32100" g_stop="32017" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32016" i_stop="31171" i_length="846">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31170" g_stop="31093" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="161" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31092" i_stop="30906" i_length="187">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30905" g_stop="30800" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="267" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30799" i_stop="29667" i_length="1133">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29666" g_stop="29583" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="351" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29582" i_stop="27922" i_length="1661">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27921" g_stop="27813" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="460" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27812" i_stop="27711" i_length="102">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.186" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27710" g_stop="27643" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="528" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E365632" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32100" e_stop="32017"/>
          <exon e_start="31170" e_stop="31093"/>
          <exon e_start="30905" e_stop="30800"/>
          <exon e_start="29666" e_stop="29583"/>
          <exon e_start="27921" e_stop="27813"/>
          <exon e_start="27710" e_stop="27643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCGTCAATTGCAACCACTCCGATACTCCGCCGTGGTTGGTCGCCGCCGGCTGGGAAAATTCTTCCTCTCTTTTCAAGTCAAGGTCAGTAACAACTGTTGACCTGCTCTTTCTCTTTACTGGTCAATGTTTATATTTAGAGACGAGAGACTCATCAGTATTATTTTTTTAAACTTTACTGAGCAAATACTGTAAGATCCGAAGCTATATATGTAAATTGTATCGTTGAAGTCTAATTGTCCCTCGGAATTTGCAATTGCTGAAACGTAGGTTGGCTTTGAGTGAGAGCATCAGGATTTTATTTGACAGCTGATGTTTTGATTGAATAAATTTCTGTTCTTAATTGTCCATATAACGTAAGATCCAAATCTGTATATACATTGTGTTTCTTAAATGCTAGCCATGGTCAGGAATTATGTACAATTTGTTACTTGCTCAGTCTATTTTTACTTGTCCATGAAACAAAGTCAATAATTTGGAAAATAAGTATAGATAATAATAAGGGTAAAATTATTTGGGATGACCTAGTGATTTGAGCTTGGGACTTCCACGTTGGATATCTCAAGTTTGTAACCCCTTGCCAATAAAAATAAGAGGTTTGCCTTTTGGGTTGAGCTCATTACCCGGGGCTTGCCTAATGCGGATTACCTATCGTGTGTAGTTTGGGAGCTGTGGTGTGCACCCAAAGGTAGCGGCTACAGTTTCCCTTGTCATATAAGAAAGAAAAAAAAAGTAATAAGGGTAAAATGGTAAATTATCTTTTAATTTTCTTAACTGGACTAGTAAAATTGGACATCTTTTTTAAGTGTAGTGGACAATAAAAATGGATGGAGAGAATAATTTATAAGCATAACAGCTATTCGTAACCTGTAACTCTTTGTACAGTATACTGACTATACTCAATTTGGTCAATGTATACTATTGTCTCAGGCATCGCACTAACTTATCTGCCTCGTCAGAATGATGGATTACAGAAACAAGCTAGTCTTGGCTCCAATGGTCCGAGTGGTAAGTACCTTCAAGTGAATTTAAATTAGAGCAGTCCTGTTTTGGTACTTCATGTTCCCATTTCTAGATGTGTGTGGCTCTTTTTAAATTCACCAGGAAGCATAGTTAAAACTGCTCTTAATGTGTTTTTTACTTTACTAAATGATGCTTTAAATGCCCATGTGTATTCTTCATTGCTTTTGGCCAGGGTACATTGCCGTTTAGGCTGCTTGCTGCCCAATATGGAGCTGACATAACCTATGGAGAGGAGATTATTGATCATAAGATCATCAAATGTGAGCGGCGAGTTAATGGTAATTTCTTGTTCATCCTTTTGCATCCTTCGTCTGGATTATCCTTGAACATTTTTCATGTAACATGTAAACTAAATACATACTACCTCTATTGAAAGAATGAAACGAACAGTTCCTAAAAATGCCAAGGCACCAATTACGTGACCACTATTGTTCTTATTCAAGACCCTTTCTTTGATGAATATAACCTTGGTTTGAATGTGATGTATATGTCAATTTGAGTACTTCTATATTTCTAATGGATTATCAGATCTTATGCTTTTATGTTAATGAAAGAAGGATGTGAACTCTTAATTTCATCATGTTATGGCTCTCTAGTCTCTATCAAGAAAATGAGCCTTTTATTTGAAGAAATTTGATAACGAGAAGTTTTACATGGATCTGTGGCTTAAATGGAATATTTGAGAGATGATTGAGCATTTACTGATGATAGTTAATATCGGAACGTTAAAACCTTGAACTGAATATTTTAGTGTGAGTTGATTGCCCCTCGAATACCAAACAAGGATTTGTAAATTATTATATAGGTCGTGTACAGTGGTGGAGCCACCTTGTTCTCACGGGGTTCATCCGAACCCCCTTCACCGGAAAATTAGTACTATTTATATATGGTTAAAATTATTTTTTAGGTATACATAGTAAATGTCGAACCCCCTCGACTATTTCGTTTGTCTATTTCTTCAGATTTTGAACCCCCTTATTGAAAAAATCTTCATGTATATTGACATAGTATAGATGACATCTGATACCTGATTCAGTAGCTTTCCAAGCGGAGAAGATTTATTCAAAGTCATTACTCTGTAAAGGCTTTATGACTTGCTGTATATGTTGTTGACTTTGCAGTTAGCATTATGCTTTATGCCTTGCATTTTACTTCATATTTTTATTTTTAGGTATTATGAGCATAGATGAATAGGATTCACAGTCACTTATGAAAAAGAAACGAAAAGATAAATATCATAGTGAAGCCTGCCTTTAGATGCAGGTTACCTAGTACATTTGAGATGGCAAAAGAAAAAAGTTGCTAAACTCGATGCTTCTAAAATATTTCTCATGAGTTTTACCCCTTATTCCTTAGATGTCTTAGGGACTACTGACATAGTGGAGAAGGGAACTGATAATGTTGTTTTCAGAACGTGCCCCGAGGAGAGAAATCGAGTTGTATTTCAGATGGGCACTTCTGATGCCATGAGGGCTCTCAAAGCTGCTGAAATAGTGTATGTTCCATTCAGTTCTTTCTTTTTTCCTCCCTTATCATAACTAATTTTCGTACTTTAAATCCATCTGCTCTCCTCCCCCCCCCCCTCCCCCCCCCTCACGCACACACAATCTGTTTTTCACATGGTCATACACAGAGTCTTATAGACAGACAGATTGGATTGGATTCCTATGATGAAATCTCGCTCTTGTTTCCACTTGTTTTATTTTCAATATGCGTCTTCTAGCATTTTTGGTGGTATTTCTTTTTAAGTAATGTGATGCATTATGTAGTATATCTCTGTTGGTTATGTAAGAACTCGTATGGTTGAGTTTATGAACAGACAAGCAGTTTCTCTAGCGAAACCAGATACCCTCACCTCCATCCACACCCAAAAAAGGCAAAAAAGACAAACATTCATTTTGAGCAAATACAAATGCCATTAATTAATAACTCCTTTCTGCCGGTTTGGGGTTCCTAATAGGTTGTGTCATTCTCTTGCTGAGTATAGTGGCACCTGCATAAGTCTTCTTGTGCCATGAAACGTTTTCTTGATAACAACAGATATTATTGGGGGGTTTTACAAGGGGTGAGGTAGAGTATGTATGTCCTAATTTCCATACTGAACATCAAGGTTAGAAGTGGTCTTGTTGGATTTAAGAGGTAGATTTCATATATTCCAGTTCTCTATATTATACATCAATGTTAGAAATGTTCTTGTTGGAATTCTTTACTAATTTGCTTGAGGAACTGTCCTTTTTCTTTGATGAAGTAATGTGTTTTGTTAAGGAGCATCTAGAAGATGCAACTTACTAAAGAAATCTGCTAGCAATTACTAGTAAAGTGAAGTTGCAATTCCTTATACAAAGTGCTACCCTAAGCGTAGGGAGCTTACAATCTGAAAAAATGGTCGGGGCTAGTTACAGACTCATAGGTGTCAATTTAATCAGGCAAAACAGACTTAGCAGTCACTTTGCTTTGAGGGAAGAGTTTTGAGTTGAAATACCATCAAAGCATCTACTGTTTCTTTCAATCCACAGACACCAAAAAATTTATTCCAGGAATCATTACCCGGATCTTCTTGATGGCCTTGTCAACTCTCAAGTGGCAGTGTGGCACCAGCTTGAATAAGCTTCCTTCACATGCACAACATCACCCATTTCAGCCCAAGGAGGAAAAATAGAAATTATTGAGGAACTGTTTTTGAAGCTGGACTCTCTGCTTTTGCTTTTCATTTTGTCAAATGATGTCATCGTTTTCTGCATTGGAAGTCTAGATTTTTAAGTTTTTCATGTTGTTAGCAGTATTTAGAATCGACTTTTCTGACATTAATTGGATGATGGATATAGCTGATGTTCGTTTATAAATAACAGGCTTGTCAGAGTTAAATTTATTAATGTTGAACTGCAACAAGCTGCAGTGATATGAATTCGCTTCTCCAACAATTTTCTCTATATTGAATAGCTATCATAATATTCTGTGAATTGCATTCTTATCATGATTCTTAATATACTTTCTTAAGATAGTGAAGAAACTTCAAAGCACATGCTTGAGTTTCTTTGCTCTTTTTAGGTCTTTACTTCTGACTTGGTCATGAAAGCTTAAACCAGCAATTATGCTCGATATGGGTAGGAAGTTAGTGCATCTGATCGAATTATTTGATGGTCTGTCCCTTTTCAGGTGTAAGGATGTAGCAGCAGTTGACGTAAACATGGGATGCCCCAAGTCATTCTCTATTAGTGGAGGCATGGGTGCTGCACTGTTGAGCAAACCAGAGCTCATCCATGATGTATGCAATTACTGTTGCTCCTTCATCAGTATCCGAGTTTCCTTCTAATATAGCATAGGAGTGCATGTCCTGTTCATAATGCTTCCCTTCTTCTGAACTCAGATTTTGACAACATTGCGAAGGAACTTGGATGTACCAATAACATGCAAAATTAGGTTATTAAAAGATCC</genome_strand>
        <mrna_strand>GCTCGTCAATTGCAACCACTCCGATACTCCGTCGTGGTTGGTCGCCGCCGGCTGGGAAAATTCTTCCTCTCTTTTCAAGTCAA-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGCACTAACTTATCTGCCTCGTCAGAATGATGGATTACAGAAACAGGCTAGTCTTGGCTCCAATGGTCCGAGTG...........................................................................................................................................................................................GGTACATTGCCGTTTAGGCTGCTTGCTGCCCAATATGGAGCTGACATAACCTATGGAGAGGAGATTATTGATCATAAGATCATCAAATGTGAGCGGCGAGTTAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTGCCCCGAGGAGAGAAATCGAGTTGTATTTCAGATGGGCACTTCTGATGCCATGAGGGCTCTCAAAGCTGCTGAAATAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAAGATGTAGCAGCAGTGGACGTAAACATGGGATGCCCCAAGTCATTCTCTATTACTGGAGGCATGGGTGCTGCACTGTTGAGCAAACCAGAGCTCATCCATGAT......................................................................................................ATTTTGACAACATTGCGAAGGAACTTGGATGTACCAATAACATGCAAAATTAGGTTATTAAAAGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287902" ref_strand="+" ref_description="SGN-E287902 [cLES-19-J5]">
      <seq>cggacccttccgcggcgccgctcgtcaattgcaaccactccgatactccgccgtggttggtcgccgccggctgggaaaattcttcctctcttttcaagtcaaggcatcgcactaacttatctgcctcgtcagaatgatggattacagaaacaagctagtcttggctccaatggtccgagtgggtacattgccgtttaggctgcttgctgcccaatatggagctgacataacctatggagaggagattattgatcataagatcatcaaatgtgagcggcgagttaatgaacgtgccccgaggagagaaatcgagttgtatttcagatgggcacttctgatgccatgagggctctcaaagctgctgaaatagtgtgtaaggatgtagcagcagttgacgtaaacatgggatgccccaagtcattctctattagtggaggcatgggtgctgcactgttgagcaaaccagagctcatccatgatattttgacaacattgcgaaggaacttggatgtaccaataacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32419" stop="27366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32119" g_stop="32017" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32016" i_stop="31171" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31170" g_stop="31093" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="181" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31092" i_stop="30906" i_length="187">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30905" g_stop="30800" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="287" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30799" i_stop="29667" i_length="1133">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29666" g_stop="29583" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="371" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29582" i_stop="27922" i_length="1661">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27921" g_stop="27813" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="480" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27812" i_stop="27711" i_length="102">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.186" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27710" g_stop="27666" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="525" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E287902" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32119" e_stop="32017"/>
          <exon e_start="31170" e_stop="31093"/>
          <exon e_start="30905" e_stop="30800"/>
          <exon e_start="29666" e_stop="29583"/>
          <exon e_start="27921" e_stop="27813"/>
          <exon e_start="27710" e_stop="27666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGACCCTTCCGCGGCGCCGCTCGTCAATTGCAACCACTCCGATACTCCGCCGTGGTTGGTCGCCGCCGGCTGGGAAAATTCTTCCTCTCTTTTCAAGTCAAGGTCAGTAACAACTGTTGACCTGCTCTTTCTCTTTACTGGTCAATGTTTATATTTAGAGACGAGAGACTCATCAGTATTATTTTTTTAAACTTTACTGAGCAAATACTGTAAGATCCGAAGCTATATATGTAAATTGTATCGTTGAAGTCTAATTGTCCCTCGGAATTTGCAATTGCTGAAACGTAGGTTGGCTTTGAGTGAGAGCATCAGGATTTTATTTGACAGCTGATGTTTTGATTGAATAAATTTCTGTTCTTAATTGTCCATATAACGTAAGATCCAAATCTGTATATACATTGTGTTTCTTAAATGCTAGCCATGGTCAGGAATTATGTACAATTTGTTACTTGCTCAGTCTATTTTTACTTGTCCATGAAACAAAGTCAATAATTTGGAAAATAAGTATAGATAATAATAAGGGTAAAATTATTTGGGATGACCTAGTGATTTGAGCTTGGGACTTCCACGTTGGATATCTCAAGTTTGTAACCCCTTGCCAATAAAAATAAGAGGTTTGCCTTTTGGGTTGAGCTCATTACCCGGGGCTTGCCTAATGCGGATTACCTATCGTGTGTAGTTTGGGAGCTGTGGTGTGCACCCAAAGGTAGCGGCTACAGTTTCCCTTGTCATATAAGAAAGAAAAAAAAAGTAATAAGGGTAAAATGGTAAATTATCTTTTAATTTTCTTAACTGGACTAGTAAAATTGGACATCTTTTTTAAGTGTAGTGGACAATAAAAATGGATGGAGAGAATAATTTATAAGCATAACAGCTATTCGTAACCTGTAACTCTTTGTACAGTATACTGACTATACTCAATTTGGTCAATGTATACTATTGTCTCAGGCATCGCACTAACTTATCTGCCTCGTCAGAATGATGGATTACAGAAACAAGCTAGTCTTGGCTCCAATGGTCCGAGTGGTAAGTACCTTCAAGTGAATTTAAATTAGAGCAGTCCTGTTTTGGTACTTCATGTTCCCATTTCTAGATGTGTGTGGCTCTTTTTAAATTCACCAGGAAGCATAGTTAAAACTGCTCTTAATGTGTTTTTTACTTTACTAAATGATGCTTTAAATGCCCATGTGTATTCTTCATTGCTTTTGGCCAGGGTACATTGCCGTTTAGGCTGCTTGCTGCCCAATATGGAGCTGACATAACCTATGGAGAGGAGATTATTGATCATAAGATCATCAAATGTGAGCGGCGAGTTAATGGTAATTTCTTGTTCATCCTTTTGCATCCTTCGTCTGGATTATCCTTGAACATTTTTCATGTAACATGTAAACTAAATACATACTACCTCTATTGAAAGAATGAAACGAACAGTTCCTAAAAATGCCAAGGCACCAATTACGTGACCACTATTGTTCTTATTCAAGACCCTTTCTTTGATGAATATAACCTTGGTTTGAATGTGATGTATATGTCAATTTGAGTACTTCTATATTTCTAATGGATTATCAGATCTTATGCTTTTATGTTAATGAAAGAAGGATGTGAACTCTTAATTTCATCATGTTATGGCTCTCTAGTCTCTATCAAGAAAATGAGCCTTTTATTTGAAGAAATTTGATAACGAGAAGTTTTACATGGATCTGTGGCTTAAATGGAATATTTGAGAGATGATTGAGCATTTACTGATGATAGTTAATATCGGAACGTTAAAACCTTGAACTGAATATTTTAGTGTGAGTTGATTGCCCCTCGAATACCAAACAAGGATTTGTAAATTATTATATAGGTCGTGTACAGTGGTGGAGCCACCTTGTTCTCACGGGGTTCATCCGAACCCCCTTCACCGGAAAATTAGTACTATTTATATATGGTTAAAATTATTTTTTAGGTATACATAGTAAATGTCGAACCCCCTCGACTATTTCGTTTGTCTATTTCTTCAGATTTTGAACCCCCTTATTGAAAAAATCTTCATGTATATTGACATAGTATAGATGACATCTGATACCTGATTCAGTAGCTTTCCAAGCGGAGAAGATTTATTCAAAGTCATTACTCTGTAAAGGCTTTATGACTTGCTGTATATGTTGTTGACTTTGCAGTTAGCATTATGCTTTATGCCTTGCATTTTACTTCATATTTTTATTTTTAGGTATTATGAGCATAGATGAATAGGATTCACAGTCACTTATGAAAAAGAAACGAAAAGATAAATATCATAGTGAAGCCTGCCTTTAGATGCAGGTTACCTAGTACATTTGAGATGGCAAAAGAAAAAAGTTGCTAAACTCGATGCTTCTAAAATATTTCTCATGAGTTTTACCCCTTATTCCTTAGATGTCTTAGGGACTACTGACATAGTGGAGAAGGGAACTGATAATGTTGTTTTCAGAACGTGCCCCGAGGAGAGAAATCGAGTTGTATTTCAGATGGGCACTTCTGATGCCATGAGGGCTCTCAAAGCTGCTGAAATAGTGTATGTTCCATTCAGTTCTTTCTTTTTTCCTCCCTTATCATAACTAATTTTCGTACTTTAAATCCATCTGCTCTCCTCCCCCCCCCCCTCCCCCCCCCTCACGCACACACAATCTGTTTTTCACATGGTCATACACAGAGTCTTATAGACAGACAGATTGGATTGGATTCCTATGATGAAATCTCGCTCTTGTTTCCACTTGTTTTATTTTCAATATGCGTCTTCTAGCATTTTTGGTGGTATTTCTTTTTAAGTAATGTGATGCATTATGTAGTATATCTCTGTTGGTTATGTAAGAACTCGTATGGTTGAGTTTATGAACAGACAAGCAGTTTCTCTAGCGAAACCAGATACCCTCACCTCCATCCACACCCAAAAAAGGCAAAAAAGACAAACATTCATTTTGAGCAAATACAAATGCCATTAATTAATAACTCCTTTCTGCCGGTTTGGGGTTCCTAATAGGTTGTGTCATTCTCTTGCTGAGTATAGTGGCACCTGCATAAGTCTTCTTGTGCCATGAAACGTTTTCTTGATAACAACAGATATTATTGGGGGGTTTTACAAGGGGTGAGGTAGAGTATGTATGTCCTAATTTCCATACTGAACATCAAGGTTAGAAGTGGTCTTGTTGGATTTAAGAGGTAGATTTCATATATTCCAGTTCTCTATATTATACATCAATGTTAGAAATGTTCTTGTTGGAATTCTTTACTAATTTGCTTGAGGAACTGTCCTTTTTCTTTGATGAAGTAATGTGTTTTGTTAAGGAGCATCTAGAAGATGCAACTTACTAAAGAAATCTGCTAGCAATTACTAGTAAAGTGAAGTTGCAATTCCTTATACAAAGTGCTACCCTAAGCGTAGGGAGCTTACAATCTGAAAAAATGGTCGGGGCTAGTTACAGACTCATAGGTGTCAATTTAATCAGGCAAAACAGACTTAGCAGTCACTTTGCTTTGAGGGAAGAGTTTTGAGTTGAAATACCATCAAAGCATCTACTGTTTCTTTCAATCCACAGACACCAAAAAATTTATTCCAGGAATCATTACCCGGATCTTCTTGATGGCCTTGTCAACTCTCAAGTGGCAGTGTGGCACCAGCTTGAATAAGCTTCCTTCACATGCACAACATCACCCATTTCAGCCCAAGGAGGAAAAATAGAAATTATTGAGGAACTGTTTTTGAAGCTGGACTCTCTGCTTTTGCTTTTCATTTTGTCAAATGATGTCATCGTTTTCTGCATTGGAAGTCTAGATTTTTAAGTTTTTCATGTTGTTAGCAGTATTTAGAATCGACTTTTCTGACATTAATTGGATGATGGATATAGCTGATGTTCGTTTATAAATAACAGGCTTGTCAGAGTTAAATTTATTAATGTTGAACTGCAACAAGCTGCAGTGATATGAATTCGCTTCTCCAACAATTTTCTCTATATTGAATAGCTATCATAATATTCTGTGAATTGCATTCTTATCATGATTCTTAATATACTTTCTTAAGATAGTGAAGAAACTTCAAAGCACATGCTTGAGTTTCTTTGCTCTTTTTAGGTCTTTACTTCTGACTTGGTCATGAAAGCTTAAACCAGCAATTATGCTCGATATGGGTAGGAAGTTAGTGCATCTGATCGAATTATTTGATGGTCTGTCCCTTTTCAGGTGTAAGGATGTAGCAGCAGTTGACGTAAACATGGGATGCCCCAAGTCATTCTCTATTAGTGGAGGCATGGGTGCTGCACTGTTGAGCAAACCAGAGCTCATCCATGATGTATGCAATTACTGTTGCTCCTTCATCAGTATCCGAGTTTCCTTCTAATATAGCATAGGAGTGCATGTCCTGTTCATAATGCTTCCCTTCTTCTGAACTCAGATTTTGACAACATTGCGAAGGAACTTGGATGTACCAATAACATGC</genome_strand>
        <mrna_strand>CGGACCCTTCCGCGGCGCCGCTCGTCAATTGCAACCACTCCGATACTCCGCCGTGGTTGGTCGCCGCCGGCTGGGAAAATTCTTCCTCTCTTTTCAAGTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGCACTAACTTATCTGCCTCGTCAGAATGATGGATTACAGAAACAAGCTAGTCTTGGCTCCAATGGTCCGAGTG...........................................................................................................................................................................................GGTACATTGCCGTTTAGGCTGCTTGCTGCCCAATATGGAGCTGACATAACCTATGGAGAGGAGATTATTGATCATAAGATCATCAAATGTGAGCGGCGAGTTAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTGCCCCGAGGAGAGAAATCGAGTTGTATTTCAGATGGGCACTTCTGATGCCATGAGGGCTCTCAAAGCTGCTGAAATAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAGGATGTAGCAGCAGTTGACGTAAACATGGGATGCCCCAAGTCATTCTCTATTAGTGGAGGCATGGGTGCTGCACTGTTGAGCAAACCAGAGCTCATCCATGAT......................................................................................................ATTTTGACAACATTGCGAAGGAACTTGGATGTACCAATAACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338930" ref_strand="+" ref_description="SGN-E338930 [cTOE-21-F22]">
      <seq>aaccactccgatactgcgccgtggttggtcgccgccggctgggaaaattcttcctctcttttcaagtcaaggcatcgcactaacttatctgcctcgtcagaatgatggattacagaaacaagctagtcctggctcccatggtccgagtgggtacattgccgtttaggctgcttgctgcccaatatggagctgacataacctatggagaggagattattgatcataagatcatcaaatgtgagcggcgagttaatgaacgtgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32387" stop="30500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32087" g_stop="32017" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32016" i_stop="31171" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31170" g_stop="31093" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="149" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31092" i_stop="30906" i_length="187">
            <donor d_prob="0.953" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30905" g_stop="30800" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="255" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E338930" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32087" e_stop="32017"/>
          <exon e_start="31170" e_stop="31093"/>
          <exon e_start="30905" e_stop="30800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCACTCCGATACTCCGCCGTGGTTGGTCGCCGCCGGCTGGGAAAATTCTTCCTCTCTTTTCAAGTCAAGGTCAGTAACAACTGTTGACCTGCTCTTTCTCTTTACTGGTCAATGTTTATATTTAGAGACGAGAGACTCATCAGTATTATTTTTTTAAACTTTACTGAGCAAATACTGTAAGATCCGAAGCTATATATGTAAATTGTATCGTTGAAGTCTAATTGTCCCTCGGAATTTGCAATTGCTGAAACGTAGGTTGGCTTTGAGTGAGAGCATCAGGATTTTATTTGACAGCTGATGTTTTGATTGAATAAATTTCTGTTCTTAATTGTCCATATAACGTAAGATCCAAATCTGTATATACATTGTGTTTCTTAAATGCTAGCCATGGTCAGGAATTATGTACAATTTGTTACTTGCTCAGTCTATTTTTACTTGTCCATGAAACAAAGTCAATAATTTGGAAAATAAGTATAGATAATAATAAGGGTAAAATTATTTGGGATGACCTAGTGATTTGAGCTTGGGACTTCCACGTTGGATATCTCAAGTTTGTAACCCCTTGCCAATAAAAATAAGAGGTTTGCCTTTTGGGTTGAGCTCATTACCCGGGGCTTGCCTAATGCGGATTACCTATCGTGTGTAGTTTGGGAGCTGTGGTGTGCACCCAAAGGTAGCGGCTACAGTTTCCCTTGTCATATAAGAAAGAAAAAAAAAGTAATAAGGGTAAAATGGTAAATTATCTTTTAATTTTCTTAACTGGACTAGTAAAATTGGACATCTTTTTTAAGTGTAGTGGACAATAAAAATGGATGGAGAGAATAATTTATAAGCATAACAGCTATTCGTAACCTGTAACTCTTTGTACAGTATACTGACTATACTCAATTTGGTCAATGTATACTATTGTCTCAGGCATCGCACTAACTTATCTGCCTCGTCAGAATGATGGATTACAGAAACAAGCTAGTCTTGGCTCCAATGGTCCGAGTGGTAAGTACCTTCAAGTGAATTTAAATTAGAGCAGTCCTGTTTTGGTACTTCATGTTCCCATTTCTAGATGTGTGTGGCTCTTTTTAAATTCACCAGGAAGCATAGTTAAAACTGCTCTTAATGTGTTTTTTACTTTACTAAATGATGCTTTAAATGCCCATGTGTATTCTTCATTGCTTTTGGCCAGGGTACATTGCCGTTTAGGCTGCTTGCTGCCCAATATGGAGCTGACATAACCTATGGAGAGGAGATTATTGATCATAAGATCATCAAATGTGAGCGGCGAGTTAATG</genome_strand>
        <mrna_strand>AACCACTCCGATACTGCGCCGTGGTTGGTCGCCGCCGGCTGGGAAAATTCTTCCTCTCTTTTCAAGTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGCACTAACTTATCTGCCTCGTCAGAATGATGGATTACAGAAACAAGCTAGTCCTGGCTCCCATGGTCCGAGTG...........................................................................................................................................................................................GGTACATTGCCGTTTAGGCTGCTTGCTGCCCAATATGGAGCTGACATAACCTATGGAGAGGAGATTATTGATCATAAGATCATCAAATGTGAGCGGCGAGTTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369052" ref_strand="+" ref_description="SGN-E369052 [TUS-25-L23]">
      <seq>tgaaaatgtgattggaggaagttccagtgaggaggcacttcaccaggtgcatgatgtcaaggtggatgaagaccttcctgaaagggaggaccttatattagaagaagcacaatctctcgataattcaacttcagatgaacctttcgttggcctggagtttgaatctgaagccgcagcacatgcattttataatgcatatgcaacaagggtgggttttatcatccgggttagtaagctttcgcgatctaggcgtgatggctccgccattggtcgagcactagtttgcaacaaggagggttttagaatgcctgataagcgggaaaagattgtgcgacagagagcagaaacaagggttggttgcagagcaatgatattagttagaaaaataagctctgggaaatgggttgtcacaaaatttgtcaaggagcactctcatccattgtgcccaggcaaaggtcgcagggacttgatctatgatcaatacccgaacgagcatgacaaaatccgggaactatctcaacaactggcagctgagaaaaagcgatctgctacatataagaggcatttggaaatgattttcgagcacattgaggagcacaatcaatctctgtctaagaagatccaagatattgtacacaatgttagggagttggagtccagagatgaacatcatcatagatagttttagcttaatatgcctttgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37721" stop="40857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38021" g_stop="38507" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38508" i_stop="40337" i_length="1830">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40338" g_stop="40557" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="707" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E369052" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38021" e_stop="38507"/>
          <exon e_start="40338" e_stop="40557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATGTGATTGGAGGAAGTTCCAGTGAGGAGGCACTTCACCAGGTGCATGATGTCAAGGTGGATGAAGACCTTCCTGAAAGGGAGGACCTTATATTAGAAGAAGCACAATCTCTCGATAATTCAACTTCAGATGAACCTTTCGTTGGCCTGGAGTTTGAATCTGAAGCCGCAGCACATGCATTTTATAATGCATATGCAACAAGGGTGGGTTTTATCATCCGGGTTAGTAAGCTTTCGCGATCTAGGCGTGATGGCTCCGCCATTGGTCGAGCACTAGTTTGCAACAAGGAGGGTTTTAGAATGCCTGATAAGCGGGAAAAGATTGTGCGACAGAGAGCAGAAACAAGGGTTGGTTGCAGAGCAATGATATTAGTTAGAAAAATAAGCTCTGGGAAATGGGTTGTCACAAAATTTGTCAAGGAGCACTCTCATCCATTGTGCCCAGGCAAAGGTCGCAGGGACTTGATCTATGATCAATACCCGGTTAGTTTTCTGCCTTATCTTTATTAAGGTCTTGTAACATAAGGTATCCTACTTTCTTTTTGTACATACATGTCATTTAATTTTCTAGACTATATCATCCTATTATTGCCTTTTGCCTTTGATTAAACGTCTTTTGTTTGTACCATTTGATGGAATCTGAAATTTTAAAGGAGGCAACAACATGTATGTTATAACTTATATGTACTAGTTTCTGGATACCGGCTTTGCATGTGTACCTCATTTAATTAGTACATGATTTTTAAAACTCACATAAATCTTAATAATCAATGTGTTTTAGTTATCAAATAAAATTTATAGAGAAATGGAAGTTTATGAAAATGATGAATATTGAACTCATTTAGCTAGCTCAATAAAGGAAGAAATCTTGTGCCACGGAGGTCCTCAAATGCCTTATTGCAAAATAGAGACACATATGGGAGCAAAGTTTCTTCTAAACTGAAATCTTAGTTTATCCCAAAACCTAATTAGAGAACATGTTTAGGACTACCAAATGCCGAATATAAATATTATGAAAATTGTAGTTAATAATGCTATTGTCGAGTTACTTATTTTGCTATTAAAAGACAAAAAGCAAGGCATGTTGGCAAATGTTTTTAAGTCATTGCCGCTTAATAAATTTTATTTCTATAACTTAAATTTAAAAGCCAAATGACGATATGAAACAGAGTGAACATGGCTGCTTCTCACTGAAATCACTTAAATTTATAAGTGAATGATTTCATGGATATATCAAGTGGGTGTCAACATTATATTCCACCTTCTTACTTTTTCCCTCACAAAGGCAACACCAGCTAAACATCATCCTTCTCAAACTTTCTACTGTTAGTATGCTGTGGCAAAATGGTATAAAGGATAGTTCCATTTTGGTATGAGGAACTTATGGTTATGAGAACAAAATGTTGTAGTAACCAAAAAAGGAACAACAGAATTTATATCTTACCTCTATAAGTGCAACCTCTATTTTGCTGGGGGGAGAGGCGTGTGTGCAAATATTTGCCCATTTTGCTTTCTTTTATAGCACCATTATCCTGCTGTTCTCTCAGAGCTACCATTTAAGGTGGAGTGCTAATTGAATTTTAAGAGAAATTCGACAAGAGAAAAATCATTACGAAGGAAAAGGGAGAAATTCGGCAAGATATATCCTTCTATGTTGTTTGGACTCACTATTCCTTGATTGCAAATACTAATAAATGGTAGTCCATCTTTCCATTTTGGGAGTTCTGTAAAAGTGATGGCGTGTTACTTATACAAATTTATTCAGTTAGCACTCTGTTATGTGGATAAAAGATGATATAAAGTGTTTTCATTTGTGTCTTTGGACAGGTTATATATTCGTGAGTCACCTTACCCTTCAATTTCCGTCATCATTCATATTGATATTACATGAACCTAGAAATGTAATCCTTTTTGGCTTCTTTGGTGTGCGAGAAGAAGTGTTTATAGAAGTCATGACCGTTGTGCTTTTGGTTGTAATATGCACTTAAAATACTGATCAAGTCGAAGTATCAAATTCAAATTTGAAAACGTTAACTCTAAATACTACAAATAGTTGGAGATGGTAAATCTGTCATAAAAGTACATATTATTGTCATCGCGAGGACATTTAAACTAGAAACTAGATCATATAAACTGGAGTGGGGGAAATTAGTCGATTTAACAATTGCCACTTGTAGCAGTAGTTTTAAAATTACTGATTTTCTCTGTCAATGCATCTAAAACTGAGTATCTTATGCCTAGTTCATCTTCAAAGAACTAACTTTACCCGATTTCAGCTAACACTTGTTTTGGTTTCTCAACTTCTTCCTGCAGAACGAGCATGACAAAATCCGGGAACTATCTCAACAACTGGCAGCTGAGAAAAAGCGATCTGCTACATATAAGAGGCATTTGGAAATGATTTTCGAGCACATTGAGGAGCACAATCAATCTCTGTCTAAGAAGATCCAAGATATTGTACACAATGTTAGGGAGTTGGAGTCCAGAGATGAACATCATCATAGATAGTTTTAGCTTAATATGCCTTTGTTGA</genome_strand>
        <mrna_strand>TGAAAATGTGATTGGAGGAAGTTCCAGTGAGGAGGCACTTCACCAGGTGCATGATGTCAAGGTGGATGAAGACCTTCCTGAAAGGGAGGACCTTATATTAGAAGAAGCACAATCTCTCGATAATTCAACTTCAGATGAACCTTTCGTTGGCCTGGAGTTTGAATCTGAAGCCGCAGCACATGCATTTTATAATGCATATGCAACAAGGGTGGGTTTTATCATCCGGGTTAGTAAGCTTTCGCGATCTAGGCGTGATGGCTCCGCCATTGGTCGAGCACTAGTTTGCAACAAGGAGGGTTTTAGAATGCCTGATAAGCGGGAAAAGATTGTGCGACAGAGAGCAGAAACAAGGGTTGGTTGCAGAGCAATGATATTAGTTAGAAAAATAAGCTCTGGGAAATGGGTTGTCACAAAATTTGTCAAGGAGCACTCTCATCCATTGTGCCCAGGCAAAGGTCGCAGGGACTTGATCTATGATCAATACCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAGCATGACAAAATCCGGGAACTATCTCAACAACTGGCAGCTGAGAAAAAGCGATCTGCTACATATAAGAGGCATTTGGAAATGATTTTCGAGCACATTGAGGAGCACAATCAATCTCTGTCTAAGAAGATCCAAGATATTGTACACAATGTTAGGGAGTTGGAGTCCAGAGATGAACATCATCATAGATAGTTTTAGCTTAATATGCCTTTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248934" ref_strand="+" ref_description="SGN-E248934 [cLEF-49-P19]">
      <seq>tgaaaatgtgattggaggaagttccagtgaggaagcacttcaccaggtgcatgatgtcaaagtggatgaagaccttcctgaaagggaggaccttatattagaagaagcacaatctctcgataattcaacttcagatgaacctttcgttggcctggagtttgaatctgaagccgcagcacatgcattttataatgcatatgcaacaagggtgggttttatcatccgggttagtaagctttcgcgatctaagcgtgatggctccgccattggtcgagcactagtttgcaacaaggagggttttagaatgcctgataagcgggaaaagattgtgcgacagagagcagaaacaagggttggttgcagagcaatgatattagttagaaaaataagctctgggaaatgggttgtcacaaaatttgtcaaggagcactctcatccattgtgcccaggcaaaggtcgcaaggacttgatctatgatcaatacccgaacgagcatgacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37721" stop="38807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38021" g_stop="38507" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E248934" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38021" e_stop="38507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATGTGATTGGAGGAAGTTCCAGTGAGGAGGCACTTCACCAGGTGCATGATGTCAAGGTGGATGAAGACCTTCCTGAAAGGGAGGACCTTATATTAGAAGAAGCACAATCTCTCGATAATTCAACTTCAGATGAACCTTTCGTTGGCCTGGAGTTTGAATCTGAAGCCGCAGCACATGCATTTTATAATGCATATGCAACAAGGGTGGGTTTTATCATCCGGGTTAGTAAGCTTTCGCGATCTAGGCGTGATGGCTCCGCCATTGGTCGAGCACTAGTTTGCAACAAGGAGGGTTTTAGAATGCCTGATAAGCGGGAAAAGATTGTGCGACAGAGAGCAGAAACAAGGGTTGGTTGCAGAGCAATGATATTAGTTAGAAAAATAAGCTCTGGGAAATGGGTTGTCACAAAATTTGTCAAGGAGCACTCTCATCCATTGTGCCCAGGCAAAGGTCGCAGGGACTTGATCTATGATCAATACCCG</genome_strand>
        <mrna_strand>TGAAAATGTGATTGGAGGAAGTTCCAGTGAGGAAGCACTTCACCAGGTGCATGATGTCAAAGTGGATGAAGACCTTCCTGAAAGGGAGGACCTTATATTAGAAGAAGCACAATCTCTCGATAATTCAACTTCAGATGAACCTTTCGTTGGCCTGGAGTTTGAATCTGAAGCCGCAGCACATGCATTTTATAATGCATATGCAACAAGGGTGGGTTTTATCATCCGGGTTAGTAAGCTTTCGCGATCTAAGCGTGATGGCTCCGCCATTGGTCGAGCACTAGTTTGCAACAAGGAGGGTTTTAGAATGCCTGATAAGCGGGAAAAGATTGTGCGACAGAGAGCAGAAACAAGGGTTGGTTGCAGAGCAATGATATTAGTTAGAAAAATAAGCTCTGGGAAATGGGTTGTCACAAAATTTGTCAAGGAGCACTCTCATCCATTGTGCCCAGGCAAAGGTCGCAAGGACTTGATCTATGATCAATACCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369051" ref_strand="+" ref_description="SGN-E369051 [TUS-25-L23](-)">
      <seq>gcattttataatgcatatgcaacaagggtgggttttatcatccgggttagtaagctttcgcgatctaggcgtgatggctccgccattggtcgagcactagtttgcaacaaggagggttttagaatgcctgataagcgggaaaagattgtgcgacagagagcagaaacaagggttggttgcagagcaatgatattagttagaaaaataagctttgggaaatgggttgtcacaaaatttgtcaaggagcactttcatccattgtgcccaggcaaaggtcgcagggacttgatttatgatcaatacccgaacgagcatgacaaaatccgggaactatttcaacaactggcagctgagaaaaagcgatttgctacatataaaaggcatttggaaatgattttcgagcacattgaggagcacaatcaatttctgtttaagaagatccaagatattgtacacaatgttagggagttggagtccaaagatgaacatcatcatagatagttttagcttaatatgcctttgttgatattagtgtagaacctaagttcagtaaagatcataatgattactgtcttgacttgcctttttttccctctccctgttatccttttcattttttttgggaagggtatgaaaaatttaaaacccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37902" stop="40986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38202" g_stop="38507" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38508" i_stop="40337" i_length="1830">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40338" g_stop="40678" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="647" r_length="341" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="649" polyA_stop="682"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E369051" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38202" e_stop="38507"/>
          <exon e_start="40338" e_stop="40678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTATAATGCATATGCAACAAGGGTGGGTTTTATCATCCGGGTTAGTAAGCTTTCGCGATCTAGGCGTGATGGCTCCGCCATTGGTCGAGCACTAGTTTGCAACAAGGAGGGTTTTAGAATGCCTGATAAGCGGGAAAAGATTGTGCGACAGAGAGCAGAAACAAGGGTTGGTTGCAGAGCAATGATATTAGTTAGAAAAATAAGCTCTGGGAAATGGGTTGTCACAAAATTTGTCAAGGAGCACTCTCATCCATTGTGCCCAGGCAAAGGTCGCAGGGACTTGATCTATGATCAATACCCGGTTAGTTTTCTGCCTTATCTTTATTAAGGTCTTGTAACATAAGGTATCCTACTTTCTTTTTGTACATACATGTCATTTAATTTTCTAGACTATATCATCCTATTATTGCCTTTTGCCTTTGATTAAACGTCTTTTGTTTGTACCATTTGATGGAATCTGAAATTTTAAAGGAGGCAACAACATGTATGTTATAACTTATATGTACTAGTTTCTGGATACCGGCTTTGCATGTGTACCTCATTTAATTAGTACATGATTTTTAAAACTCACATAAATCTTAATAATCAATGTGTTTTAGTTATCAAATAAAATTTATAGAGAAATGGAAGTTTATGAAAATGATGAATATTGAACTCATTTAGCTAGCTCAATAAAGGAAGAAATCTTGTGCCACGGAGGTCCTCAAATGCCTTATTGCAAAATAGAGACACATATGGGAGCAAAGTTTCTTCTAAACTGAAATCTTAGTTTATCCCAAAACCTAATTAGAGAACATGTTTAGGACTACCAAATGCCGAATATAAATATTATGAAAATTGTAGTTAATAATGCTATTGTCGAGTTACTTATTTTGCTATTAAAAGACAAAAAGCAAGGCATGTTGGCAAATGTTTTTAAGTCATTGCCGCTTAATAAATTTTATTTCTATAACTTAAATTTAAAAGCCAAATGACGATATGAAACAGAGTGAACATGGCTGCTTCTCACTGAAATCACTTAAATTTATAAGTGAATGATTTCATGGATATATCAAGTGGGTGTCAACATTATATTCCACCTTCTTACTTTTTCCCTCACAAAGGCAACACCAGCTAAACATCATCCTTCTCAAACTTTCTACTGTTAGTATGCTGTGGCAAAATGGTATAAAGGATAGTTCCATTTTGGTATGAGGAACTTATGGTTATGAGAACAAAATGTTGTAGTAACCAAAAAAGGAACAACAGAATTTATATCTTACCTCTATAAGTGCAACCTCTATTTTGCTGGGGGGAGAGGCGTGTGTGCAAATATTTGCCCATTTTGCTTTCTTTTATAGCACCATTATCCTGCTGTTCTCTCAGAGCTACCATTTAAGGTGGAGTGCTAATTGAATTTTAAGAGAAATTCGACAAGAGAAAAATCATTACGAAGGAAAAGGGAGAAATTCGGCAAGATATATCCTTCTATGTTGTTTGGACTCACTATTCCTTGATTGCAAATACTAATAAATGGTAGTCCATCTTTCCATTTTGGGAGTTCTGTAAAAGTGATGGCGTGTTACTTATACAAATTTATTCAGTTAGCACTCTGTTATGTGGATAAAAGATGATATAAAGTGTTTTCATTTGTGTCTTTGGACAGGTTATATATTCGTGAGTCACCTTACCCTTCAATTTCCGTCATCATTCATATTGATATTACATGAACCTAGAAATGTAATCCTTTTTGGCTTCTTTGGTGTGCGAGAAGAAGTGTTTATAGAAGTCATGACCGTTGTGCTTTTGGTTGTAATATGCACTTAAAATACTGATCAAGTCGAAGTATCAAATTCAAATTTGAAAACGTTAACTCTAAATACTACAAATAGTTGGAGATGGTAAATCTGTCATAAAAGTACATATTATTGTCATCGCGAGGACATTTAAACTAGAAACTAGATCATATAAACTGGAGTGGGGGAAATTAGTCGATTTAACAATTGCCACTTGTAGCAGTAGTTTTAAAATTACTGATTTTCTCTGTCAATGCATCTAAAACTGAGTATCTTATGCCTAGTTCATCTTCAAAGAACTAACTTTACCCGATTTCAGCTAACACTTGTTTTGGTTTCTCAACTTCTTCCTGCAGAACGAGCATGACAAAATCCGGGAACTATCTCAACAACTGGCAGCTGAGAAAAAGCGATCTGCTACATATAAGAGGCATTTGGAAATGATTTTCGAGCACATTGAGGAGCACAATCAATCTCTGTCTAAGAAGATCCAAGATATTGTACACAATGTTAGGGAGTTGGAGTCCAGAGATGAACATCATCATAGATAGTTTTAGCTTAATATGCCTTTGTTGATATTAGTGTAGAACCTAAGTTCAGTAAAGATCATAATGATTACTGTCTTGACTTGCCTTTTTTTCCCTCTCCCTGTTATCCTTTTCATTTTCTTTGGGAAGAGTATGAAAAATTTAAAACC</genome_strand>
        <mrna_strand>GCATTTTATAATGCATATGCAACAAGGGTGGGTTTTATCATCCGGGTTAGTAAGCTTTCGCGATCTAGGCGTGATGGCTCCGCCATTGGTCGAGCACTAGTTTGCAACAAGGAGGGTTTTAGAATGCCTGATAAGCGGGAAAAGATTGTGCGACAGAGAGCAGAAACAAGGGTTGGTTGCAGAGCAATGATATTAGTTAGAAAAATAAGCTTTGGGAAATGGGTTGTCACAAAATTTGTCAAGGAGCACTTTCATCCATTGTGCCCAGGCAAAGGTCGCAGGGACTTGATTTATGATCAATACCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAGCATGACAAAATCCGGGAACTATTTCAACAACTGGCAGCTGAGAAAAAGCGATTTGCTACATATAAAAGGCATTTGGAAATGATTTTCGAGCACATTGAGGAGCACAATCAATTTCTGTTTAAGAAGATCCAAGATATTGTACACAATGTTAGGGAGTTGGAGTCCAAAGATGAACATCATCATAGATAGTTTTAGCTTAATATGCCTTTGTTGATATTAGTGTAGAACCTAAGTTCAGTAAAGATCATAATGATTACTGTCTTGACTTGCCTTTTTTTCCCTCTCCCTGTTATCCTTTTCATTTTTTTTGGGAAGGGTATGAAAAATTTAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332782" ref_strand="+" ref_description="SGN-E332782 [cTOD-18-F7]">
      <seq>tcttccactcatttcattgtctatattcttcttcttttctactttctcctcccatttttcccattacaaacactacatttttctgtttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48456" stop="49465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48756" g_stop="49165" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E332782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48756" e_stop="49165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCACTCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCT</genome_strand>
        <mrna_strand>TCTTCCACTCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244389" ref_strand="+" ref_description="SGN-E244389 [cLEF-3-H13]">
      <seq>ttccactcatttcattgtctatattcttcttcttttctactttctcctcccatttttcccattacaaacactacatttttctgtttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggctttatcttcagtgcctatctaacaagcttcctccttgtgatatttggcaagataaagcagccttcatcttctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48458" stop="49600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48758" g_stop="49277" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E244389" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48758" e_stop="49277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCACTCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA</genome_strand>
        <mrna_strand>TTCCACTCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTTATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390107" ref_strand="+" ref_description="SGN-E390107 [TUS-17-G21]">
      <seq>tccactcatttcattgtctatattcttcttcttttctactttctcctcccatttttcccattacaaacactacatttttctgtttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgcaaggactgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttaaccactggaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48459" stop="51210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48759" g_stop="49277" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50788" g_stop="50910" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="642" r_length="123" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E390107" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48759" e_stop="49277"/>
          <exon e_start="50788" e_stop="50910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATTAGATTATTAATAATACCATTTCACATATAGTTAATTTTGTATTTCTATGTTTAGTATTAATCACTCTGTTTCTTTTAATTCGTGTGTCTTGTTACCTTTTTAGCTCCTGATCTTCAATTCCAACATGTGACATCTTTTAAGGTCATAGTATTTAAAGGGTGTAATGTTGCCCTCAAGTTTAAGACCACTCAAGTCTCTGGCCACTTAATTAAATTTCTTGATCTGTCAACCCGAAACGCAAAATGAAAGCAGAGGGAGCAAAGGCAGATCTAGGATTTGAATCGTAGAAAAAGGTTGCACCACAAAAACAATGTGTTAAGTGGAAAATTGATCCCGAGTTCTCTATTCGAATAACTTAGCATTCAACCAATCAAGTGCACCATTAGCTTTACAAAATACATACCTAAAATATCTAGTTTCACAGAGAGACCATGATTTACAAGCCCCAAAATTAGCATATAAATTTGCCACTGAGAGGCAGTATAGTATGATAACAAAGTTCTTGCTTTTCTAGCTAAAGATATAGGGGAGAGGGAGGAATGGAGGCTTACCAGACTGCGCATCTTAAACCTCATGTCATAACCACTAAGTATCTCAAACAAGAAAGAAGTTATAGGTGTAGATAGGGCATAGTGAAAATGATTTCATGGATATGGGATAGTTTCAGAGGGCTTTGGTTCAACATCAAAGGTAGTAAGTACAACATTGAATGTATGGTAGGCGCACGTCACAAGTTTTACCTTGATGGGAAACTAAGCCTAGTGTTGTAGTGGAGAAAAGTAGATGTGTGGACTTGTTAACCACCGAATTTCAGAGTTGGAATCAATACTTTTGTGATGGTATCAACCCTTTTGAAGACCCGAAAACTCAAAGATATTTCATGTCTATATTATTGCACATAGAATTTTTACCTTATATTTGAATTGGAATATGCATATGTAAGTCAATTGATAATTAAAAGTGATTTTTCTGAACATGGTTATATCTGTCAAAATGATGTAAACATACCCGAGAAAAAAGATTGGAAGTTAAAGATCAATGTCTTTTCCAGAAATTCTCTGACCATCTTTGCGAGACTTTTATATTTGCTTGCATTTAACTTGAACTGTTATGTATGCAGGATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATC</genome_strand>
        <mrna_strand>TCCACTCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAACCACTGGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210427" ref_strand="+" ref_description="SGN-E210427 [cLEC-35-G15]">
      <seq>ccactcatttcattgtctatattcttcttcttttctactttctcctcccatttttcccattacaaacactacatttttctgtttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagcttctgtgatttgctgtgctgatgaggctgctctgtgtgccaaatgtgatattgaagttcatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48460" stop="49497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48760" g_stop="49197" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E210427" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48760" e_stop="49197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTG</genome_strand>
        <mrna_strand>CCACTCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTTCTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCCAAATGTGATATTGAAGTTCATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735645" ref_strand="+" ref_description="SGN-E735645 [LC02BF11]">
      <seq>cgcttatttcattgtctatattcttcttcttttctactttctcctcccatttttcccattacaaacactacatttttctgtttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgcaaggactgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttagccactggaatccgtgtagccttgagctcaagctgtaataaggaatcagtaaaaaaccaactgcagccacaaccacctcagcagaattcccaacaagttggcttgaaaatgcctccacagcagttgtcctgtataacatcaccatcttggcctgtcgatgatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48461" stop="51365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48761" g_stop="49277" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50788" g_stop="51065" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="795" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E735645" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48761" e_stop="49277"/>
          <exon e_start="50788" e_stop="51065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATTAGATTATTAATAATACCATTTCACATATAGTTAATTTTGTATTTCTATGTTTAGTATTAATCACTCTGTTTCTTTTAATTCGTGTGTCTTGTTACCTTTTTAGCTCCTGATCTTCAATTCCAACATGTGACATCTTTTAAGGTCATAGTATTTAAAGGGTGTAATGTTGCCCTCAAGTTTAAGACCACTCAAGTCTCTGGCCACTTAATTAAATTTCTTGATCTGTCAACCCGAAACGCAAAATGAAAGCAGAGGGAGCAAAGGCAGATCTAGGATTTGAATCGTAGAAAAAGGTTGCACCACAAAAACAATGTGTTAAGTGGAAAATTGATCCCGAGTTCTCTATTCGAATAACTTAGCATTCAACCAATCAAGTGCACCATTAGCTTTACAAAATACATACCTAAAATATCTAGTTTCACAGAGAGACCATGATTTACAAGCCCCAAAATTAGCATATAAATTTGCCACTGAGAGGCAGTATAGTATGATAACAAAGTTCTTGCTTTTCTAGCTAAAGATATAGGGGAGAGGGAGGAATGGAGGCTTACCAGACTGCGCATCTTAAACCTCATGTCATAACCACTAAGTATCTCAAACAAGAAAGAAGTTATAGGTGTAGATAGGGCATAGTGAAAATGATTTCATGGATATGGGATAGTTTCAGAGGGCTTTGGTTCAACATCAAAGGTAGTAAGTACAACATTGAATGTATGGTAGGCGCACGTCACAAGTTTTACCTTGATGGGAAACTAAGCCTAGTGTTGTAGTGGAGAAAAGTAGATGTGTGGACTTGTTAACCACCGAATTTCAGAGTTGGAATCAATACTTTTGTGATGGTATCAACCCTTTTGAAGACCCGAAAACTCAAAGATATTTCATGTCTATATTATTGCACATAGAATTTTTACCTTATATTTGAATTGGAATATGCATATGTAAGTCAATTGATAATTAAAAGTGATTTTTCTGAACATGGTTATATCTGTCAAAATGATGTAAACATACCCGAGAAAAAAGATTGGAAGTTAAAGATCAATGTCTTTTCCAGAAATTCTCTGACCATCTTTGCGAGACTTTTATATTTGCTTGCATTTAACTTGAACTGTTATGTATGCAGGATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACT</genome_strand>
        <mrna_strand>CGCTTATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737311" ref_strand="+" ref_description="SGN-E737311 [LC09BA07]">
      <seq>ctcatttcattgtctatattcttcttcttttctactttctcctcccatttttcccattacaaacactacatttttctgtttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgcaaggactgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttagccactggaatccgtgtagccttgagctcaagctgtaataaggaatcagtaaaaaaccaactgcagccacaaccacctcagcagaattcccaacaagttggcttgaaaatgcctccacagcagttgtcctgtataacatcaccatcttggcctgtcgatgatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48463" stop="51365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48763" g_stop="49277" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50788" g_stop="51065" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="793" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E737311" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48763" e_stop="49277"/>
          <exon e_start="50788" e_stop="51065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATTAGATTATTAATAATACCATTTCACATATAGTTAATTTTGTATTTCTATGTTTAGTATTAATCACTCTGTTTCTTTTAATTCGTGTGTCTTGTTACCTTTTTAGCTCCTGATCTTCAATTCCAACATGTGACATCTTTTAAGGTCATAGTATTTAAAGGGTGTAATGTTGCCCTCAAGTTTAAGACCACTCAAGTCTCTGGCCACTTAATTAAATTTCTTGATCTGTCAACCCGAAACGCAAAATGAAAGCAGAGGGAGCAAAGGCAGATCTAGGATTTGAATCGTAGAAAAAGGTTGCACCACAAAAACAATGTGTTAAGTGGAAAATTGATCCCGAGTTCTCTATTCGAATAACTTAGCATTCAACCAATCAAGTGCACCATTAGCTTTACAAAATACATACCTAAAATATCTAGTTTCACAGAGAGACCATGATTTACAAGCCCCAAAATTAGCATATAAATTTGCCACTGAGAGGCAGTATAGTATGATAACAAAGTTCTTGCTTTTCTAGCTAAAGATATAGGGGAGAGGGAGGAATGGAGGCTTACCAGACTGCGCATCTTAAACCTCATGTCATAACCACTAAGTATCTCAAACAAGAAAGAAGTTATAGGTGTAGATAGGGCATAGTGAAAATGATTTCATGGATATGGGATAGTTTCAGAGGGCTTTGGTTCAACATCAAAGGTAGTAAGTACAACATTGAATGTATGGTAGGCGCACGTCACAAGTTTTACCTTGATGGGAAACTAAGCCTAGTGTTGTAGTGGAGAAAAGTAGATGTGTGGACTTGTTAACCACCGAATTTCAGAGTTGGAATCAATACTTTTGTGATGGTATCAACCCTTTTGAAGACCCGAAAACTCAAAGATATTTCATGTCTATATTATTGCACATAGAATTTTTACCTTATATTTGAATTGGAATATGCATATGTAAGTCAATTGATAATTAAAAGTGATTTTTCTGAACATGGTTATATCTGTCAAAATGATGTAAACATACCCGAGAAAAAAGATTGGAAGTTAAAGATCAATGTCTTTTCCAGAAATTCTCTGACCATCTTTGCGAGACTTTTATATTTGCTTGCATTTAACTTGAACTGTTATGTATGCAGGATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACT</genome_strand>
        <mrna_strand>CTCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544774" ref_strand="+" ref_description="SGN-E544774 [TUS-67-E12]">
      <seq>ctcatttcattgtctatattcttcttcttttctactttctcctcccatttttcccattacaaacactacatttttctgtttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgcaaggactgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttagccactggaatccgtgtagccttgagctcaagctgtaataaggaatcagtnaaaaaccaactgcagccacaaccacctcagcagaattccccacaagttggcttgaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48463" stop="51309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48763" g_stop="49277" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50788" g_stop="51009" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="737" r_length="222" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E544774" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48763" e_stop="49277"/>
          <exon e_start="50788" e_stop="51009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATTAGATTATTAATAATACCATTTCACATATAGTTAATTTTGTATTTCTATGTTTAGTATTAATCACTCTGTTTCTTTTAATTCGTGTGTCTTGTTACCTTTTTAGCTCCTGATCTTCAATTCCAACATGTGACATCTTTTAAGGTCATAGTATTTAAAGGGTGTAATGTTGCCCTCAAGTTTAAGACCACTCAAGTCTCTGGCCACTTAATTAAATTTCTTGATCTGTCAACCCGAAACGCAAAATGAAAGCAGAGGGAGCAAAGGCAGATCTAGGATTTGAATCGTAGAAAAAGGTTGCACCACAAAAACAATGTGTTAAGTGGAAAATTGATCCCGAGTTCTCTATTCGAATAACTTAGCATTCAACCAATCAAGTGCACCATTAGCTTTACAAAATACATACCTAAAATATCTAGTTTCACAGAGAGACCATGATTTACAAGCCCCAAAATTAGCATATAAATTTGCCACTGAGAGGCAGTATAGTATGATAACAAAGTTCTTGCTTTTCTAGCTAAAGATATAGGGGAGAGGGAGGAATGGAGGCTTACCAGACTGCGCATCTTAAACCTCATGTCATAACCACTAAGTATCTCAAACAAGAAAGAAGTTATAGGTGTAGATAGGGCATAGTGAAAATGATTTCATGGATATGGGATAGTTTCAGAGGGCTTTGGTTCAACATCAAAGGTAGTAAGTACAACATTGAATGTATGGTAGGCGCACGTCACAAGTTTTACCTTGATGGGAAACTAAGCCTAGTGTTGTAGTGGAGAAAAGTAGATGTGTGGACTTGTTAACCACCGAATTTCAGAGTTGGAATCAATACTTTTGTGATGGTATCAACCCTTTTGAAGACCCGAAAACTCAAAGATATTTCATGTCTATATTATTGCACATAGAATTTTTACCTTATATTTGAATTGGAATATGCATATGTAAGTCAATTGATAATTAAAAGTGATTTTTCTGAACATGGTTATATCTGTCAAAATGATGTAAACATACCCGAGAAAAAAGATTGGAAGTTAAAGATCAATGTCTTTTCCAGAAATTCTCTGACCATCTTTGCGAGACTTTTATATTTGCTTGCATTTAACTTGAACTGTTATGTATGCAGGATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATG</genome_strand>
        <mrna_strand>CTCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTNAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCCACAAGTTGGCTTGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307813" ref_strand="+" ref_description="SGN-E307813 [cLEY-20-M1]">
      <seq>tcatttcattgtctatattcttcttcttttctactttctcctcccatttttcccattacaaacactacatttttctgtttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgcaaggactgtgacgaagcaattcattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48464" stop="51162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48764" g_stop="49277" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50788" g_stop="50862" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="589" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E307813" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48764" e_stop="49277"/>
          <exon e_start="50788" e_stop="50862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATTAGATTATTAATAATACCATTTCACATATAGTTAATTTTGTATTTCTATGTTTAGTATTAATCACTCTGTTTCTTTTAATTCGTGTGTCTTGTTACCTTTTTAGCTCCTGATCTTCAATTCCAACATGTGACATCTTTTAAGGTCATAGTATTTAAAGGGTGTAATGTTGCCCTCAAGTTTAAGACCACTCAAGTCTCTGGCCACTTAATTAAATTTCTTGATCTGTCAACCCGAAACGCAAAATGAAAGCAGAGGGAGCAAAGGCAGATCTAGGATTTGAATCGTAGAAAAAGGTTGCACCACAAAAACAATGTGTTAAGTGGAAAATTGATCCCGAGTTCTCTATTCGAATAACTTAGCATTCAACCAATCAAGTGCACCATTAGCTTTACAAAATACATACCTAAAATATCTAGTTTCACAGAGAGACCATGATTTACAAGCCCCAAAATTAGCATATAAATTTGCCACTGAGAGGCAGTATAGTATGATAACAAAGTTCTTGCTTTTCTAGCTAAAGATATAGGGGAGAGGGAGGAATGGAGGCTTACCAGACTGCGCATCTTAAACCTCATGTCATAACCACTAAGTATCTCAAACAAGAAAGAAGTTATAGGTGTAGATAGGGCATAGTGAAAATGATTTCATGGATATGGGATAGTTTCAGAGGGCTTTGGTTCAACATCAAAGGTAGTAAGTACAACATTGAATGTATGGTAGGCGCACGTCACAAGTTTTACCTTGATGGGAAACTAAGCCTAGTGTTGTAGTGGAGAAAAGTAGATGTGTGGACTTGTTAACCACCGAATTTCAGAGTTGGAATCAATACTTTTGTGATGGTATCAACCCTTTTGAAGACCCGAAAACTCAAAGATATTTCATGTCTATATTATTGCACATAGAATTTTTACCTTATATTTGAATTGGAATATGCATATGTAAGTCAATTGATAATTAAAAGTGATTTTTCTGAACATGGTTATATCTGTCAAAATGATGTAAACATACCCGAGAAAAAAGATTGGAAGTTAAAGATCAATGTCTTTTCCAGAAATTCTCTGACCATCTTTGCGAGACTTTTATATTTGCTTGCATTTAACTTGAACTGTTATGTATGCAGGATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCA</genome_strand>
        <mrna_strand>TCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306612" ref_strand="+" ref_description="SGN-E306612 [cLEY-19-I11]">
      <seq>tcatttcattgtctatattcttcttcttttctactttctcctcccatttttcccattacaaacactacatttttctgtttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaagcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgcaaggactgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48464" stop="51146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48764" g_stop="49277" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50788" g_stop="50846" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="573" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E306612" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48764" e_stop="49277"/>
          <exon e_start="50788" e_stop="50846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATTAGATTATTAATAATACCATTTCACATATAGTTAATTTTGTATTTCTATGTTTAGTATTAATCACTCTGTTTCTTTTAATTCGTGTGTCTTGTTACCTTTTTAGCTCCTGATCTTCAATTCCAACATGTGACATCTTTTAAGGTCATAGTATTTAAAGGGTGTAATGTTGCCCTCAAGTTTAAGACCACTCAAGTCTCTGGCCACTTAATTAAATTTCTTGATCTGTCAACCCGAAACGCAAAATGAAAGCAGAGGGAGCAAAGGCAGATCTAGGATTTGAATCGTAGAAAAAGGTTGCACCACAAAAACAATGTGTTAAGTGGAAAATTGATCCCGAGTTCTCTATTCGAATAACTTAGCATTCAACCAATCAAGTGCACCATTAGCTTTACAAAATACATACCTAAAATATCTAGTTTCACAGAGAGACCATGATTTACAAGCCCCAAAATTAGCATATAAATTTGCCACTGAGAGGCAGTATAGTATGATAACAAAGTTCTTGCTTTTCTAGCTAAAGATATAGGGGAGAGGGAGGAATGGAGGCTTACCAGACTGCGCATCTTAAACCTCATGTCATAACCACTAAGTATCTCAAACAAGAAAGAAGTTATAGGTGTAGATAGGGCATAGTGAAAATGATTTCATGGATATGGGATAGTTTCAGAGGGCTTTGGTTCAACATCAAAGGTAGTAAGTACAACATTGAATGTATGGTAGGCGCACGTCACAAGTTTTACCTTGATGGGAAACTAAGCCTAGTGTTGTAGTGGAGAAAAGTAGATGTGTGGACTTGTTAACCACCGAATTTCAGAGTTGGAATCAATACTTTTGTGATGGTATCAACCCTTTTGAAGACCCGAAAACTCAAAGATATTTCATGTCTATATTATTGCACATAGAATTTTTACCTTATATTTGAATTGGAATATGCATATGTAAGTCAATTGATAATTAAAAGTGATTTTTCTGAACATGGTTATATCTGTCAAAATGATGTAAACATACCCGAGAAAAAAGATTGGAAGTTAAAGATCAATGTCTTTTCCAGAAATTCTCTGACCATCTTTGCGAGACTTTTATATTTGCTTGCATTTAACTTGAACTGTTATGTATGCAGGATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGA</genome_strand>
        <mrna_strand>TCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAAGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306685" ref_strand="+" ref_description="SGN-E306685 [cLEY-19-I9]">
      <seq>tcatttcattgtctatattcttcttcttttctactttctcctcccatttttcccattacaaacactacatttttctgtttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48464" stop="49602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48764" g_stop="49277" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E306685" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48764" e_stop="49277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA</genome_strand>
        <mrna_strand>TCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307879" ref_strand="+" ref_description="SGN-E307879 [cLEY-20-E2]">
      <seq>tcatttcattgtctatattcttcttcttttctactttctgctcccatggttcccattacaaacactacatttttctgtttttgattgaaagttctcatttttagtattttggactaaatcacctgctgtgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttagaatcttgaaaagttctgagttctcttcataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48464" stop="49291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48764" g_stop="48991" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E307879" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48764" e_stop="48991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAA</genome_strand>
        <mrna_strand>TCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTGCTCCCATGGTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTCTCATTTTTAGTATTTTGGACTAAATCACCTGCTGTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTAGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727715" ref_strand="+" ref_description="SGN-E727715 [LA15CB05]">
      <seq>atttcattgtctatattcttcttcttttctactttctcctcccatttttcccattacaaacactacatttttctgtttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgcaaggactgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttagccactggaatccgtgtagccttgagctcaagctgtaataaggaatcagtaaaaaaccaactgcagccacaaccacctcagcagaattcccaacaagttggcttgaaaatgcctccacagcagttgtcctgtataacatcaccatcttggcctgtcgatgatttactaagatttccagattatgagtcgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48466" stop="51390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48766" g_stop="49277" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50788" g_stop="51090" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="815" r_length="303" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E727715" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48766" e_stop="49277"/>
          <exon e_start="50788" e_stop="51090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATTAGATTATTAATAATACCATTTCACATATAGTTAATTTTGTATTTCTATGTTTAGTATTAATCACTCTGTTTCTTTTAATTCGTGTGTCTTGTTACCTTTTTAGCTCCTGATCTTCAATTCCAACATGTGACATCTTTTAAGGTCATAGTATTTAAAGGGTGTAATGTTGCCCTCAAGTTTAAGACCACTCAAGTCTCTGGCCACTTAATTAAATTTCTTGATCTGTCAACCCGAAACGCAAAATGAAAGCAGAGGGAGCAAAGGCAGATCTAGGATTTGAATCGTAGAAAAAGGTTGCACCACAAAAACAATGTGTTAAGTGGAAAATTGATCCCGAGTTCTCTATTCGAATAACTTAGCATTCAACCAATCAAGTGCACCATTAGCTTTACAAAATACATACCTAAAATATCTAGTTTCACAGAGAGACCATGATTTACAAGCCCCAAAATTAGCATATAAATTTGCCACTGAGAGGCAGTATAGTATGATAACAAAGTTCTTGCTTTTCTAGCTAAAGATATAGGGGAGAGGGAGGAATGGAGGCTTACCAGACTGCGCATCTTAAACCTCATGTCATAACCACTAAGTATCTCAAACAAGAAAGAAGTTATAGGTGTAGATAGGGCATAGTGAAAATGATTTCATGGATATGGGATAGTTTCAGAGGGCTTTGGTTCAACATCAAAGGTAGTAAGTACAACATTGAATGTATGGTAGGCGCACGTCACAAGTTTTACCTTGATGGGAAACTAAGCCTAGTGTTGTAGTGGAGAAAAGTAGATGTGTGGACTTGTTAACCACCGAATTTCAGAGTTGGAATCAATACTTTTGTGATGGTATCAACCCTTTTGAAGACCCGAAAACTCAAAGATATTTCATGTCTATATTATTGCACATAGAATTTTTACCTTATATTTGAATTGGAATATGCATATGTAAGTCAATTGATAATTAAAAGTGATTTTTCTGAACATGGTTATATCTGTCAAAATGATGTAAACATACCCGAGAAAAAAGATTGGAAGTTAAAGATCAATGTCTTTTCCAGAAATTCTCTGACCATCTTTGCGAGACTTTTATATTTGCTTGCATTTAACTTGAACTGTTATGTATGCAGGATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGT</genome_strand>
        <mrna_strand>ATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAAGATTTCCAGATTATGAGTCGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329597" ref_strand="+" ref_description="SGN-E329597 [cTOD-3-I7]">
      <seq>attgtctatattcttcttcttttctactttctcctcccatttttcccattacaaacactacatttttctgtttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgcaaggactgtgacgaagcaattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48471" stop="51159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48771" g_stop="49277" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50788" g_stop="50859" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="579" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E329597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48771" e_stop="49277"/>
          <exon e_start="50788" e_stop="50859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATTAGATTATTAATAATACCATTTCACATATAGTTAATTTTGTATTTCTATGTTTAGTATTAATCACTCTGTTTCTTTTAATTCGTGTGTCTTGTTACCTTTTTAGCTCCTGATCTTCAATTCCAACATGTGACATCTTTTAAGGTCATAGTATTTAAAGGGTGTAATGTTGCCCTCAAGTTTAAGACCACTCAAGTCTCTGGCCACTTAATTAAATTTCTTGATCTGTCAACCCGAAACGCAAAATGAAAGCAGAGGGAGCAAAGGCAGATCTAGGATTTGAATCGTAGAAAAAGGTTGCACCACAAAAACAATGTGTTAAGTGGAAAATTGATCCCGAGTTCTCTATTCGAATAACTTAGCATTCAACCAATCAAGTGCACCATTAGCTTTACAAAATACATACCTAAAATATCTAGTTTCACAGAGAGACCATGATTTACAAGCCCCAAAATTAGCATATAAATTTGCCACTGAGAGGCAGTATAGTATGATAACAAAGTTCTTGCTTTTCTAGCTAAAGATATAGGGGAGAGGGAGGAATGGAGGCTTACCAGACTGCGCATCTTAAACCTCATGTCATAACCACTAAGTATCTCAAACAAGAAAGAAGTTATAGGTGTAGATAGGGCATAGTGAAAATGATTTCATGGATATGGGATAGTTTCAGAGGGCTTTGGTTCAACATCAAAGGTAGTAAGTACAACATTGAATGTATGGTAGGCGCACGTCACAAGTTTTACCTTGATGGGAAACTAAGCCTAGTGTTGTAGTGGAGAAAAGTAGATGTGTGGACTTGTTAACCACCGAATTTCAGAGTTGGAATCAATACTTTTGTGATGGTATCAACCCTTTTGAAGACCCGAAAACTCAAAGATATTTCATGTCTATATTATTGCACATAGAATTTTTACCTTATATTTGAATTGGAATATGCATATGTAAGTCAATTGATAATTAAAAGTGATTTTTCTGAACATGGTTATATCTGTCAAAATGATGTAAACATACCCGAGAAAAAAGATTGGAAGTTAAAGATCAATGTCTTTTCCAGAAATTCTCTGACCATCTTTGCGAGACTTTTATATTTGCTTGCATTTAACTTGAACTGTTATGTATGCAGGATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCAT</genome_strand>
        <mrna_strand>ATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210197" ref_strand="+" ref_description="SGN-E210197 [cLEC-40-O21]">
      <seq>ttgtctatattcttcttcttttctactttctcctcccatttttcccattacaaacactacatttttctgtttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgggtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48472" stop="49546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48772" g_stop="49246" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E210197" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48772" e_stop="49246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATC</genome_strand>
        <mrna_strand>TTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGGGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747460" ref_strand="+" ref_description="SGN-E747460 [GI|45544864]">
      <seq>tgtctatattcttcttcttttctacttctcctcccatttttcccattacaaacactacatttttctgtttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgcaaggactgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttagccactggaatccgtgtagccttgagctcaagctgtaataaggaatcagtaaaaaaccaactgcagccacaaccacctcagcagaattcccaacaagttggcttgaaaatgcctccacagcagttgtcctgtataacatcaccatcttggcctgtcgatgatttactaggatttccagattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaagatactccttatcttgcttactttcgcagtgcgctcatattgtcaacagacatgttcagtaagtagaggaaacactattctgcttaagatatcctttatcttgcttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48473" stop="52216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48773" g_stop="49277" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50788" g_stop="51096" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="813" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51477" g_stop="51915" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="814" r_stop="1252" r_length="439" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1253" polyA_stop="1278"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E747460" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1253</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48773" e_stop="49277"/>
          <exon e_start="50788" e_stop="51096"/>
          <exon e_start="51477" e_stop="51915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATTAGATTATTAATAATACCATTTCACATATAGTTAATTTTGTATTTCTATGTTTAGTATTAATCACTCTGTTTCTTTTAATTCGTGTGTCTTGTTACCTTTTTAGCTCCTGATCTTCAATTCCAACATGTGACATCTTTTAAGGTCATAGTATTTAAAGGGTGTAATGTTGCCCTCAAGTTTAAGACCACTCAAGTCTCTGGCCACTTAATTAAATTTCTTGATCTGTCAACCCGAAACGCAAAATGAAAGCAGAGGGAGCAAAGGCAGATCTAGGATTTGAATCGTAGAAAAAGGTTGCACCACAAAAACAATGTGTTAAGTGGAAAATTGATCCCGAGTTCTCTATTCGAATAACTTAGCATTCAACCAATCAAGTGCACCATTAGCTTTACAAAATACATACCTAAAATATCTAGTTTCACAGAGAGACCATGATTTACAAGCCCCAAAATTAGCATATAAATTTGCCACTGAGAGGCAGTATAGTATGATAACAAAGTTCTTGCTTTTCTAGCTAAAGATATAGGGGAGAGGGAGGAATGGAGGCTTACCAGACTGCGCATCTTAAACCTCATGTCATAACCACTAAGTATCTCAAACAAGAAAGAAGTTATAGGTGTAGATAGGGCATAGTGAAAATGATTTCATGGATATGGGATAGTTTCAGAGGGCTTTGGTTCAACATCAAAGGTAGTAAGTACAACATTGAATGTATGGTAGGCGCACGTCACAAGTTTTACCTTGATGGGAAACTAAGCCTAGTGTTGTAGTGGAGAAAAGTAGATGTGTGGACTTGTTAACCACCGAATTTCAGAGTTGGAATCAATACTTTTGTGATGGTATCAACCCTTTTGAAGACCCGAAAACTCAAAGATATTTCATGTCTATATTATTGCACATAGAATTTTTACCTTATATTTGAATTGGAATATGCATATGTAAGTCAATTGATAATTAAAAGTGATTTTTCTGAACATGGTTATATCTGTCAAAATGATGTAAACATACCCGAGAAAAAAGATTGGAAGTTAAAGATCAATGTCTTTTCCAGAAATTCTCTGACCATCTTTGCGAGACTTTTATATTTGCTTGCATTTAACTTGAACTGTTATGTATGCAGGATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTAC</genome_strand>
        <mrna_strand>TGTCTATATTCTTCTTCTTTTCTAC-TTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379161" ref_strand="+" ref_description="SGN-E379161 [TUS-1-E11]">
      <seq>gtctatattcttcttcttttctactttctcctcccatttttcccattacaaacactacatttttctgtttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgcaaggactgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccacgcttcttagccactgggatccgtgtagcccttgagctcagctgtaataaaggatcagtaaaaaccaactgcagccacaccacctcagcagaatcccaacaagtggcttgaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48474" stop="51310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48774" g_stop="49277" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50788" g_stop="51010" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="721" r_length="217" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E379161" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48774" e_stop="49277"/>
          <exon e_start="50788" e_stop="51010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATTAGATTATTAATAATACCATTTCACATATAGTTAATTTTGTATTTCTATGTTTAGTATTAATCACTCTGTTTCTTTTAATTCGTGTGTCTTGTTACCTTTTTAGCTCCTGATCTTCAATTCCAACATGTGACATCTTTTAAGGTCATAGTATTTAAAGGGTGTAATGTTGCCCTCAAGTTTAAGACCACTCAAGTCTCTGGCCACTTAATTAAATTTCTTGATCTGTCAACCCGAAACGCAAAATGAAAGCAGAGGGAGCAAAGGCAGATCTAGGATTTGAATCGTAGAAAAAGGTTGCACCACAAAAACAATGTGTTAAGTGGAAAATTGATCCCGAGTTCTCTATTCGAATAACTTAGCATTCAACCAATCAAGTGCACCATTAGCTTTACAAAATACATACCTAAAATATCTAGTTTCACAGAGAGACCATGATTTACAAGCCCCAAAATTAGCATATAAATTTGCCACTGAGAGGCAGTATAGTATGATAACAAAGTTCTTGCTTTTCTAGCTAAAGATATAGGGGAGAGGGAGGAATGGAGGCTTACCAGACTGCGCATCTTAAACCTCATGTCATAACCACTAAGTATCTCAAACAAGAAAGAAGTTATAGGTGTAGATAGGGCATAGTGAAAATGATTTCATGGATATGGGATAGTTTCAGAGGGCTTTGGTTCAACATCAAAGGTAGTAAGTACAACATTGAATGTATGGTAGGCGCACGTCACAAGTTTTACCTTGATGGGAAACTAAGCCTAGTGTTGTAGTGGAGAAAAGTAGATGTGTGGACTTGTTAACCACCGAATTTCAGAGTTGGAATCAATACTTTTGTGATGGTATCAACCCTTTTGAAGACCCGAAAACTCAAAGATATTTCATGTCTATATTATTGCACATAGAATTTTTACCTTATATTTGAATTGGAATATGCATATGTAAGTCAATTGATAATTAAAAGTGATTTTTCTGAACATGGTTATATCTGTCAAAATGATGTAAACATACCCGAGAAAAAAGATTGGAAGTTAAAGATCAATGTCTTTTCCAGAAATTCTCTGACCATCTTTGCGAGACTTTTATATTTGCTTGCATTTAACTTGAACTGTTATGTATGCAGGATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAG-CCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGC</genome_strand>
        <mrna_strand>GTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACC-ACGCTTCTTAGCCACTGGGATCCGTGTAGCCCTTGAGCTC-AGCTGTAATAAAGGATCAGT-AAAAACCAACTGCAGCCAC-ACCACCTCAGCAGAA-TCCCAACAAG-TGGCTTG-AAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201507" ref_strand="+" ref_description="SGN-E201507 [cLEC-4-F3]">
      <seq>gtctatattcttcttcttttctactttctcctcccatttttcccattacaaacactacatttttctgtttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48474" stop="49419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48774" g_stop="49119" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E201507" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48774" e_stop="49119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTG</genome_strand>
        <mrna_strand>GTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717365" ref_strand="+" ref_description="SGN-E717365 [FC01AA09]">
      <seq>ccatggggatccgatctgttctatattcttcttcttttctactttctcctcccatttttcccattacaaacactacatttttctgtttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgcaaggactgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttagccactggaatccgtgtagccttgagctcaagctgtaataaggaatcagtaaaaaaccaactgcagccacaaccacctcagcagaattcccaacaagttggcttgaaaatgcctccacagcagttgtcctgtataacatcaccatcttggcctgtcgatgatttactaggatttccagattatgagtcgagtgacaagaaggatctacttgagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48468" stop="51795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48775" g_stop="49277" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="522" r_length="503" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50788" g_stop="51096" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="831" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51477" g_stop="51495" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="832" r_stop="850" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E717365" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48775" e_stop="49277"/>
          <exon e_start="50788" e_stop="51096"/>
          <exon e_start="51477" e_stop="51495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATTAGATTATTAATAATACCATTTCACATATAGTTAATTTTGTATTTCTATGTTTAGTATTAATCACTCTGTTTCTTTTAATTCGTGTGTCTTGTTACCTTTTTAGCTCCTGATCTTCAATTCCAACATGTGACATCTTTTAAGGTCATAGTATTTAAAGGGTGTAATGTTGCCCTCAAGTTTAAGACCACTCAAGTCTCTGGCCACTTAATTAAATTTCTTGATCTGTCAACCCGAAACGCAAAATGAAAGCAGAGGGAGCAAAGGCAGATCTAGGATTTGAATCGTAGAAAAAGGTTGCACCACAAAAACAATGTGTTAAGTGGAAAATTGATCCCGAGTTCTCTATTCGAATAACTTAGCATTCAACCAATCAAGTGCACCATTAGCTTTACAAAATACATACCTAAAATATCTAGTTTCACAGAGAGACCATGATTTACAAGCCCCAAAATTAGCATATAAATTTGCCACTGAGAGGCAGTATAGTATGATAACAAAGTTCTTGCTTTTCTAGCTAAAGATATAGGGGAGAGGGAGGAATGGAGGCTTACCAGACTGCGCATCTTAAACCTCATGTCATAACCACTAAGTATCTCAAACAAGAAAGAAGTTATAGGTGTAGATAGGGCATAGTGAAAATGATTTCATGGATATGGGATAGTTTCAGAGGGCTTTGGTTCAACATCAAAGGTAGTAAGTACAACATTGAATGTATGGTAGGCGCACGTCACAAGTTTTACCTTGATGGGAAACTAAGCCTAGTGTTGTAGTGGAGAAAAGTAGATGTGTGGACTTGTTAACCACCGAATTTCAGAGTTGGAATCAATACTTTTGTGATGGTATCAACCCTTTTGAAGACCCGAAAACTCAAAGATATTTCATGTCTATATTATTGCACATAGAATTTTTACCTTATATTTGAATTGGAATATGCATATGTAAGTCAATTGATAATTAAAAGTGATTTTTCTGAACATGGTTATATCTGTCAAAATGATGTAAACATACCCGAGAAAAAAGATTGGAAGTTAAAGATCAATGTCTTTTCCAGAAATTCTCTGACCATCTTTGCGAGACTTTTATATTTGCTTGCATTTAACTTGAACTGTTATGTATGCAGGATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTG</genome_strand>
        <mrna_strand>TCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348620" ref_strand="+" ref_description="SGN-E348620 [cTOF-30-I2]">
      <seq>tcttcttttcaactttctcctcccagttttcccttacaaaccacctacctttttctgtttttgattgaaagttttcatttttaagtattttggaactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagaataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgaaggactgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttagccactggattncgtgtagccttgagctcaagctgttatagggaatcagtaaaaaaccaactgcagccacaaccacctcagcagaattcccaacaagtttgcttgaaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48485" stop="51310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48785" g_stop="49277" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50788" g_stop="51010" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="719" r_length="222" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E348620" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48785" e_stop="49277"/>
          <exon e_start="50788" e_stop="51010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAA-CA-CTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTT-AGTATTTTGGA-CTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAG-ATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATTAGATTATTAATAATACCATTTCACATATAGTTAATTTTGTATTTCTATGTTTAGTATTAATCACTCTGTTTCTTTTAATTCGTGTGTCTTGTTACCTTTTTAGCTCCTGATCTTCAATTCCAACATGTGACATCTTTTAAGGTCATAGTATTTAAAGGGTGTAATGTTGCCCTCAAGTTTAAGACCACTCAAGTCTCTGGCCACTTAATTAAATTTCTTGATCTGTCAACCCGAAACGCAAAATGAAAGCAGAGGGAGCAAAGGCAGATCTAGGATTTGAATCGTAGAAAAAGGTTGCACCACAAAAACAATGTGTTAAGTGGAAAATTGATCCCGAGTTCTCTATTCGAATAACTTAGCATTCAACCAATCAAGTGCACCATTAGCTTTACAAAATACATACCTAAAATATCTAGTTTCACAGAGAGACCATGATTTACAAGCCCCAAAATTAGCATATAAATTTGCCACTGAGAGGCAGTATAGTATGATAACAAAGTTCTTGCTTTTCTAGCTAAAGATATAGGGGAGAGGGAGGAATGGAGGCTTACCAGACTGCGCATCTTAAACCTCATGTCATAACCACTAAGTATCTCAAACAAGAAAGAAGTTATAGGTGTAGATAGGGCATAGTGAAAATGATTTCATGGATATGGGATAGTTTCAGAGGGCTTTGGTTCAACATCAAAGGTAGTAAGTACAACATTGAATGTATGGTAGGCGCACGTCACAAGTTTTACCTTGATGGGAAACTAAGCCTAGTGTTGTAGTGGAGAAAAGTAGATGTGTGGACTTGTTAACCACCGAATTTCAGAGTTGGAATCAATACTTTTGTGATGGTATCAACCCTTTTGAAGACCCGAAAACTCAAAGATATTTCATGTCTATATTATTGCACATAGAATTTTTACCTTATATTTGAATTGGAATATGCATATGTAAGTCAATTGATAATTAAAAGTGATTTTTCTGAACATGGTTATATCTGTCAAAATGATGTAAACATACCCGAGAAAAAAGATTGGAAGTTAAAGATCAATGTCTTTTCCAGAAATTCTCTGACCATCTTTGCGAGACTTTTATATTTGCTTGCATTTAACTTGAACTGTTATGTATGCAGGATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGC</genome_strand>
        <mrna_strand>TCTTCTTTTCAACTTTCTCCTCCCAGTTTTCCC-TTACAAACCACCTACCTTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAAGTATTTTGGAACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGAATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTG-AAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGATTNCGTGTAGCCTTGAGCTCAAGCTGTTATAGGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTTGCTTGAAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700748" ref_strand="+" ref_description="SGN-E700748 [FA14AC01]">
      <seq>ctactttctcctcccatttttcccattacaaacactacatttttctgtttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagtaagggaacttcttctttttgttgccctgttcatggaataatttgtttttagtctagattgtgttactaatatttcaatgtggtagttgtgttgctccttgattaatggaaagttaacttgtgtaccctcccactggtttgggctttggactttcaacatggaagtctgaagtgccttctgggtcaatctcagtgcaccggacttgcctagtgctaattacatcttccatgtggtttgcaagctattatataggaacggggtttgcaagctgttaaataagagcggggttagcccctatgcgcactcaagggcagcggctgcgggtttccttgtcataaaaaaagttggaaagttaacttgtgatgttccttttgattaaactctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48494" stop="49967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48794" g_stop="49667" g_length="874"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="874" r_length="874" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E700748" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48794" e_stop="49667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATT</genome_strand>
        <mrna_strand>CTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAAACTCTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345660" ref_strand="+" ref_description="SGN-E345660 [cTOF-18-O8]">
      <seq>ttacaaacactacatttttctgtttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgcaaggactgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttagccactggaatccgtgtagccttgagctcaagctgtataaggaatcagtaaaaaaccaactgcagccacaaccacctcagcagaattcccaacaagttggcttgaaaatgcctccacagcagttgtcctgtataacatcaccatcttggcctgtcgatgatttactagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48519" stop="51369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48819" g_stop="49277" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50788" g_stop="51069" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="740" r_length="281" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E345660" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48819" e_stop="49277"/>
          <exon e_start="50788" e_stop="51069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATTAGATTATTAATAATACCATTTCACATATAGTTAATTTTGTATTTCTATGTTTAGTATTAATCACTCTGTTTCTTTTAATTCGTGTGTCTTGTTACCTTTTTAGCTCCTGATCTTCAATTCCAACATGTGACATCTTTTAAGGTCATAGTATTTAAAGGGTGTAATGTTGCCCTCAAGTTTAAGACCACTCAAGTCTCTGGCCACTTAATTAAATTTCTTGATCTGTCAACCCGAAACGCAAAATGAAAGCAGAGGGAGCAAAGGCAGATCTAGGATTTGAATCGTAGAAAAAGGTTGCACCACAAAAACAATGTGTTAAGTGGAAAATTGATCCCGAGTTCTCTATTCGAATAACTTAGCATTCAACCAATCAAGTGCACCATTAGCTTTACAAAATACATACCTAAAATATCTAGTTTCACAGAGAGACCATGATTTACAAGCCCCAAAATTAGCATATAAATTTGCCACTGAGAGGCAGTATAGTATGATAACAAAGTTCTTGCTTTTCTAGCTAAAGATATAGGGGAGAGGGAGGAATGGAGGCTTACCAGACTGCGCATCTTAAACCTCATGTCATAACCACTAAGTATCTCAAACAAGAAAGAAGTTATAGGTGTAGATAGGGCATAGTGAAAATGATTTCATGGATATGGGATAGTTTCAGAGGGCTTTGGTTCAACATCAAAGGTAGTAAGTACAACATTGAATGTATGGTAGGCGCACGTCACAAGTTTTACCTTGATGGGAAACTAAGCCTAGTGTTGTAGTGGAGAAAAGTAGATGTGTGGACTTGTTAACCACCGAATTTCAGAGTTGGAATCAATACTTTTGTGATGGTATCAACCCTTTTGAAGACCCGAAAACTCAAAGATATTTCATGTCTATATTATTGCACATAGAATTTTTACCTTATATTTGAATTGGAATATGCATATGTAAGTCAATTGATAATTAAAAGTGATTTTTCTGAACATGGTTATATCTGTCAAAATGATGTAAACATACCCGAGAAAAAAGATTGGAAGTTAAAGATCAATGTCTTTTCCAGAAATTCTCTGACCATCTTTGCGAGACTTTTATATTTGCTTGCATTTAACTTGAACTGTTATGTATGCAGGATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGA</genome_strand>
        <mrna_strand>TTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGT-ATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253809" ref_strand="+" ref_description="SGN-E253809 [cLEG-28-G18]">
      <seq>cactacatttttctgtttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgcaaggactgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttagccactggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48526" stop="51209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48826" g_stop="49277" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50788" g_stop="50909" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="574" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E253809" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48826" e_stop="49277"/>
          <exon e_start="50788" e_stop="50909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATTAGATTATTAATAATACCATTTCACATATAGTTAATTTTGTATTTCTATGTTTAGTATTAATCACTCTGTTTCTTTTAATTCGTGTGTCTTGTTACCTTTTTAGCTCCTGATCTTCAATTCCAACATGTGACATCTTTTAAGGTCATAGTATTTAAAGGGTGTAATGTTGCCCTCAAGTTTAAGACCACTCAAGTCTCTGGCCACTTAATTAAATTTCTTGATCTGTCAACCCGAAACGCAAAATGAAAGCAGAGGGAGCAAAGGCAGATCTAGGATTTGAATCGTAGAAAAAGGTTGCACCACAAAAACAATGTGTTAAGTGGAAAATTGATCCCGAGTTCTCTATTCGAATAACTTAGCATTCAACCAATCAAGTGCACCATTAGCTTTACAAAATACATACCTAAAATATCTAGTTTCACAGAGAGACCATGATTTACAAGCCCCAAAATTAGCATATAAATTTGCCACTGAGAGGCAGTATAGTATGATAACAAAGTTCTTGCTTTTCTAGCTAAAGATATAGGGGAGAGGGAGGAATGGAGGCTTACCAGACTGCGCATCTTAAACCTCATGTCATAACCACTAAGTATCTCAAACAAGAAAGAAGTTATAGGTGTAGATAGGGCATAGTGAAAATGATTTCATGGATATGGGATAGTTTCAGAGGGCTTTGGTTCAACATCAAAGGTAGTAAGTACAACATTGAATGTATGGTAGGCGCACGTCACAAGTTTTACCTTGATGGGAAACTAAGCCTAGTGTTGTAGTGGAGAAAAGTAGATGTGTGGACTTGTTAACCACCGAATTTCAGAGTTGGAATCAATACTTTTGTGATGGTATCAACCCTTTTGAAGACCCGAAAACTCAAAGATATTTCATGTCTATATTATTGCACATAGAATTTTTACCTTATATTTGAATTGGAATATGCATATGTAAGTCAATTGATAATTAAAAGTGATTTTTCTGAACATGGTTATATCTGTCAAAATGATGTAAACATACCCGAGAAAAAAGATTGGAAGTTAAAGATCAATGTCTTTTCCAGAAATTCTCTGACCATCTTTGCGAGACTTTTATATTTGCTTGCATTTAACTTGAACTGTTATGTATGCAGGATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAAT</genome_strand>
        <mrna_strand>CACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699062" ref_strand="+" ref_description="SGN-E699062 [FA08CA07]">
      <seq>ccttataggagccaaagttttcatttttagtattttggactacatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgcaaggactgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttagccactggaatccgtgtagccttgagctcaagctgtaataaggaatcagtaaaaaaccaactgcagccacaaccacctcagcagaattcccaacaagttggcttgaaaatgcctccacagcagttgtcctgtataacatcaccatcttggcctgtcgatgatttactaggatttccagattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48551" stop="51920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48838" g_stop="49277" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50788" g_stop="51096" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="749" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51477" g_stop="51620" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="893" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E699062" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48838" e_stop="49277"/>
          <exon e_start="50788" e_stop="51096"/>
          <exon e_start="51477" e_stop="51620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATTAGATTATTAATAATACCATTTCACATATAGTTAATTTTGTATTTCTATGTTTAGTATTAATCACTCTGTTTCTTTTAATTCGTGTGTCTTGTTACCTTTTTAGCTCCTGATCTTCAATTCCAACATGTGACATCTTTTAAGGTCATAGTATTTAAAGGGTGTAATGTTGCCCTCAAGTTTAAGACCACTCAAGTCTCTGGCCACTTAATTAAATTTCTTGATCTGTCAACCCGAAACGCAAAATGAAAGCAGAGGGAGCAAAGGCAGATCTAGGATTTGAATCGTAGAAAAAGGTTGCACCACAAAAACAATGTGTTAAGTGGAAAATTGATCCCGAGTTCTCTATTCGAATAACTTAGCATTCAACCAATCAAGTGCACCATTAGCTTTACAAAATACATACCTAAAATATCTAGTTTCACAGAGAGACCATGATTTACAAGCCCCAAAATTAGCATATAAATTTGCCACTGAGAGGCAGTATAGTATGATAACAAAGTTCTTGCTTTTCTAGCTAAAGATATAGGGGAGAGGGAGGAATGGAGGCTTACCAGACTGCGCATCTTAAACCTCATGTCATAACCACTAAGTATCTCAAACAAGAAAGAAGTTATAGGTGTAGATAGGGCATAGTGAAAATGATTTCATGGATATGGGATAGTTTCAGAGGGCTTTGGTTCAACATCAAAGGTAGTAAGTACAACATTGAATGTATGGTAGGCGCACGTCACAAGTTTTACCTTGATGGGAAACTAAGCCTAGTGTTGTAGTGGAGAAAAGTAGATGTGTGGACTTGTTAACCACCGAATTTCAGAGTTGGAATCAATACTTTTGTGATGGTATCAACCCTTTTGAAGACCCGAAAACTCAAAGATATTTCATGTCTATATTATTGCACATAGAATTTTTACCTTATATTTGAATTGGAATATGCATATGTAAGTCAATTGATAATTAAAAGTGATTTTTCTGAACATGGTTATATCTGTCAAAATGATGTAAACATACCCGAGAAAAAAGATTGGAAGTTAAAGATCAATGTCTTTTCCAGAAATTCTCTGACCATCTTTGCGAGACTTTTATATTTGCTTGCATTTAACTTGAACTGTTATGTATGCAGGATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCT</genome_strand>
        <mrna_strand>CCTTATAGGAGCCAAAGTTTTCATTTTTAGTATTTTGGACTACATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240645" ref_strand="+" ref_description="SGN-E240645 [cLED-21-N14]">
      <seq>ttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48542" stop="51136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48842" g_stop="49277" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50788" g_stop="50836" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="485" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E240645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48842" e_stop="49277"/>
          <exon e_start="50788" e_stop="50836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATTAGATTATTAATAATACCATTTCACATATAGTTAATTTTGTATTTCTATGTTTAGTATTAATCACTCTGTTTCTTTTAATTCGTGTGTCTTGTTACCTTTTTAGCTCCTGATCTTCAATTCCAACATGTGACATCTTTTAAGGTCATAGTATTTAAAGGGTGTAATGTTGCCCTCAAGTTTAAGACCACTCAAGTCTCTGGCCACTTAATTAAATTTCTTGATCTGTCAACCCGAAACGCAAAATGAAAGCAGAGGGAGCAAAGGCAGATCTAGGATTTGAATCGTAGAAAAAGGTTGCACCACAAAAACAATGTGTTAAGTGGAAAATTGATCCCGAGTTCTCTATTCGAATAACTTAGCATTCAACCAATCAAGTGCACCATTAGCTTTACAAAATACATACCTAAAATATCTAGTTTCACAGAGAGACCATGATTTACAAGCCCCAAAATTAGCATATAAATTTGCCACTGAGAGGCAGTATAGTATGATAACAAAGTTCTTGCTTTTCTAGCTAAAGATATAGGGGAGAGGGAGGAATGGAGGCTTACCAGACTGCGCATCTTAAACCTCATGTCATAACCACTAAGTATCTCAAACAAGAAAGAAGTTATAGGTGTAGATAGGGCATAGTGAAAATGATTTCATGGATATGGGATAGTTTCAGAGGGCTTTGGTTCAACATCAAAGGTAGTAAGTACAACATTGAATGTATGGTAGGCGCACGTCACAAGTTTTACCTTGATGGGAAACTAAGCCTAGTGTTGTAGTGGAGAAAAGTAGATGTGTGGACTTGTTAACCACCGAATTTCAGAGTTGGAATCAATACTTTTGTGATGGTATCAACCCTTTTGAAGACCCGAAAACTCAAAGATATTTCATGTCTATATTATTGCACATAGAATTTTTACCTTATATTTGAATTGGAATATGCATATGTAAGTCAATTGATAATTAAAAGTGATTTTTCTGAACATGGTTATATCTGTCAAAATGATGTAAACATACCCGAGAAAAAAGATTGGAAGTTAAAGATCAATGTCTTTTCCAGAAATTCTCTGACCATCTTTGCGAGACTTTTATATTTGCTTGCATTTAACTTGAACTGTTATGTATGCAGGATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCA</genome_strand>
        <mrna_strand>TTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240194" ref_strand="+" ref_description="SGN-E240194 [cLED-25-A12]">
      <seq>ttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48542" stop="51128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48842" g_stop="49277" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50788" g_stop="50828" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="477" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E240194" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48842" e_stop="49277"/>
          <exon e_start="50788" e_stop="50828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATTAGATTATTAATAATACCATTTCACATATAGTTAATTTTGTATTTCTATGTTTAGTATTAATCACTCTGTTTCTTTTAATTCGTGTGTCTTGTTACCTTTTTAGCTCCTGATCTTCAATTCCAACATGTGACATCTTTTAAGGTCATAGTATTTAAAGGGTGTAATGTTGCCCTCAAGTTTAAGACCACTCAAGTCTCTGGCCACTTAATTAAATTTCTTGATCTGTCAACCCGAAACGCAAAATGAAAGCAGAGGGAGCAAAGGCAGATCTAGGATTTGAATCGTAGAAAAAGGTTGCACCACAAAAACAATGTGTTAAGTGGAAAATTGATCCCGAGTTCTCTATTCGAATAACTTAGCATTCAACCAATCAAGTGCACCATTAGCTTTACAAAATACATACCTAAAATATCTAGTTTCACAGAGAGACCATGATTTACAAGCCCCAAAATTAGCATATAAATTTGCCACTGAGAGGCAGTATAGTATGATAACAAAGTTCTTGCTTTTCTAGCTAAAGATATAGGGGAGAGGGAGGAATGGAGGCTTACCAGACTGCGCATCTTAAACCTCATGTCATAACCACTAAGTATCTCAAACAAGAAAGAAGTTATAGGTGTAGATAGGGCATAGTGAAAATGATTTCATGGATATGGGATAGTTTCAGAGGGCTTTGGTTCAACATCAAAGGTAGTAAGTACAACATTGAATGTATGGTAGGCGCACGTCACAAGTTTTACCTTGATGGGAAACTAAGCCTAGTGTTGTAGTGGAGAAAAGTAGATGTGTGGACTTGTTAACCACCGAATTTCAGAGTTGGAATCAATACTTTTGTGATGGTATCAACCCTTTTGAAGACCCGAAAACTCAAAGATATTTCATGTCTATATTATTGCACATAGAATTTTTACCTTATATTTGAATTGGAATATGCATATGTAAGTCAATTGATAATTAAAAGTGATTTTTCTGAACATGGTTATATCTGTCAAAATGATGTAAACATACCCGAGAAAAAAGATTGGAAGTTAAAGATCAATGTCTTTTCCAGAAATTCTCTGACCATCTTTGCGAGACTTTTATATTTGCTTGCATTTAACTTGAACTGTTATGTATGCAGGATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCT</genome_strand>
        <mrna_strand>TTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240012" ref_strand="+" ref_description="SGN-E240012 [cLED-29-L12]">
      <seq>ttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48542" stop="49379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48842" g_stop="49079" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E240012" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48842" e_stop="49079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTA</genome_strand>
        <mrna_strand>TTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245735" ref_strand="+" ref_description="SGN-E245735 [cLEF-48-K22]">
      <seq>ttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgcaaggactgtgacgaagcaattcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48544" stop="51161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48844" g_stop="49277" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50788" g_stop="50861" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="508" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E245735" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48844" e_stop="49277"/>
          <exon e_start="50788" e_stop="50861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATTAGATTATTAATAATACCATTTCACATATAGTTAATTTTGTATTTCTATGTTTAGTATTAATCACTCTGTTTCTTTTAATTCGTGTGTCTTGTTACCTTTTTAGCTCCTGATCTTCAATTCCAACATGTGACATCTTTTAAGGTCATAGTATTTAAAGGGTGTAATGTTGCCCTCAAGTTTAAGACCACTCAAGTCTCTGGCCACTTAATTAAATTTCTTGATCTGTCAACCCGAAACGCAAAATGAAAGCAGAGGGAGCAAAGGCAGATCTAGGATTTGAATCGTAGAAAAAGGTTGCACCACAAAAACAATGTGTTAAGTGGAAAATTGATCCCGAGTTCTCTATTCGAATAACTTAGCATTCAACCAATCAAGTGCACCATTAGCTTTACAAAATACATACCTAAAATATCTAGTTTCACAGAGAGACCATGATTTACAAGCCCCAAAATTAGCATATAAATTTGCCACTGAGAGGCAGTATAGTATGATAACAAAGTTCTTGCTTTTCTAGCTAAAGATATAGGGGAGAGGGAGGAATGGAGGCTTACCAGACTGCGCATCTTAAACCTCATGTCATAACCACTAAGTATCTCAAACAAGAAAGAAGTTATAGGTGTAGATAGGGCATAGTGAAAATGATTTCATGGATATGGGATAGTTTCAGAGGGCTTTGGTTCAACATCAAAGGTAGTAAGTACAACATTGAATGTATGGTAGGCGCACGTCACAAGTTTTACCTTGATGGGAAACTAAGCCTAGTGTTGTAGTGGAGAAAAGTAGATGTGTGGACTTGTTAACCACCGAATTTCAGAGTTGGAATCAATACTTTTGTGATGGTATCAACCCTTTTGAAGACCCGAAAACTCAAAGATATTTCATGTCTATATTATTGCACATAGAATTTTTACCTTATATTTGAATTGGAATATGCATATGTAAGTCAATTGATAATTAAAAGTGATTTTTCTGAACATGGTTATATCTGTCAAAATGATGTAAACATACCCGAGAAAAAAGATTGGAAGTTAAAGATCAATGTCTTTTCCAGAAATTCTCTGACCATCTTTGCGAGACTTTTATATTTGCTTGCATTTAACTTGAACTGTTATGTATGCAGGATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTC</genome_strand>
        <mrna_strand>TTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712612" ref_strand="+" ref_description="SGN-E712612 [FB05BD01]">
      <seq>ctttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgcaaggactgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttagccactggaatccgtgtagccttgagctcaagctgtaataaggaatcagtaaaaaaccaactgcagccacaaccacctcagcagaattcccaacaagttggcttgaaaatgcctccacagcagttgtcctgtataacatcaccatcttggcctgtcgatgatttactaggatttccagattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatctttggtgaactccaacttcaagaagtttccaattaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcctactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaaaataaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48653" stop="52111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48952" g_stop="49277" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50788" g_stop="51096" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="635" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51477" g_stop="51808" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="966" r_length="331" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="967" polyA_stop="990"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E712612" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>967</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48952" e_stop="49277"/>
          <exon e_start="50788" e_stop="51096"/>
          <exon e_start="51477" e_stop="51808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATTAGATTATTAATAATACCATTTCACATATAGTTAATTTTGTATTTCTATGTTTAGTATTAATCACTCTGTTTCTTTTAATTCGTGTGTCTTGTTACCTTTTTAGCTCCTGATCTTCAATTCCAACATGTGACATCTTTTAAGGTCATAGTATTTAAAGGGTGTAATGTTGCCCTCAAGTTTAAGACCACTCAAGTCTCTGGCCACTTAATTAAATTTCTTGATCTGTCAACCCGAAACGCAAAATGAAAGCAGAGGGAGCAAAGGCAGATCTAGGATTTGAATCGTAGAAAAAGGTTGCACCACAAAAACAATGTGTTAAGTGGAAAATTGATCCCGAGTTCTCTATTCGAATAACTTAGCATTCAACCAATCAAGTGCACCATTAGCTTTACAAAATACATACCTAAAATATCTAGTTTCACAGAGAGACCATGATTTACAAGCCCCAAAATTAGCATATAAATTTGCCACTGAGAGGCAGTATAGTATGATAACAAAGTTCTTGCTTTTCTAGCTAAAGATATAGGGGAGAGGGAGGAATGGAGGCTTACCAGACTGCGCATCTTAAACCTCATGTCATAACCACTAAGTATCTCAAACAAGAAAGAAGTTATAGGTGTAGATAGGGCATAGTGAAAATGATTTCATGGATATGGGATAGTTTCAGAGGGCTTTGGTTCAACATCAAAGGTAGTAAGTACAACATTGAATGTATGGTAGGCGCACGTCACAAGTTTTACCTTGATGGGAAACTAAGCCTAGTGTTGTAGTGGAGAAAAGTAGATGTGTGGACTTGTTAACCACCGAATTTCAGAGTTGGAATCAATACTTTTGTGATGGTATCAACCCTTTTGAAGACCCGAAAACTCAAAGATATTTCATGTCTATATTATTGCACATAGAATTTTTACCTTATATTTGAATTGGAATATGCATATGTAAGTCAATTGATAATTAAAAGTGATTTTTCTGAACATGGTTATATCTGTCAAAATGATGTAAACATACCCGAGAAAAAAGATTGGAAGTTAAAGATCAATGTCTTTTCCAGAAATTCTCTGACCATCTTTGCGAGACTTTTATATTTGCTTGCATTTAACTTGAACTGTTATGTATGCAGGATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAG</genome_strand>
        <mrna_strand>CTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTTGGTGAACTCCAACTTCAAGAAGTTTCCAATT-AATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCCTACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706832" ref_strand="+" ref_description="SGN-E706832 [FA31AC04]">
      <seq>ataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgcaaggactgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttagccattggaatccgtgtagccttgagctcaagctgtaataaggaatcagtaaaaaaccaactgcagccacaaccacctcagcagaattcccaacaagttggcttgaaaatgcctccacagcagttgtcctgtataacatcaccatcttggcctgtcgatgatttactaggatttccagattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48685" stop="51912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48985" g_stop="49277" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50788" g_stop="51096" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="602" r_length="309" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51477" g_stop="51612" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="738" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E706832" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48985" e_stop="49277"/>
          <exon e_start="50788" e_stop="51096"/>
          <exon e_start="51477" e_stop="51612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATTAGATTATTAATAATACCATTTCACATATAGTTAATTTTGTATTTCTATGTTTAGTATTAATCACTCTGTTTCTTTTAATTCGTGTGTCTTGTTACCTTTTTAGCTCCTGATCTTCAATTCCAACATGTGACATCTTTTAAGGTCATAGTATTTAAAGGGTGTAATGTTGCCCTCAAGTTTAAGACCACTCAAGTCTCTGGCCACTTAATTAAATTTCTTGATCTGTCAACCCGAAACGCAAAATGAAAGCAGAGGGAGCAAAGGCAGATCTAGGATTTGAATCGTAGAAAAAGGTTGCACCACAAAAACAATGTGTTAAGTGGAAAATTGATCCCGAGTTCTCTATTCGAATAACTTAGCATTCAACCAATCAAGTGCACCATTAGCTTTACAAAATACATACCTAAAATATCTAGTTTCACAGAGAGACCATGATTTACAAGCCCCAAAATTAGCATATAAATTTGCCACTGAGAGGCAGTATAGTATGATAACAAAGTTCTTGCTTTTCTAGCTAAAGATATAGGGGAGAGGGAGGAATGGAGGCTTACCAGACTGCGCATCTTAAACCTCATGTCATAACCACTAAGTATCTCAAACAAGAAAGAAGTTATAGGTGTAGATAGGGCATAGTGAAAATGATTTCATGGATATGGGATAGTTTCAGAGGGCTTTGGTTCAACATCAAAGGTAGTAAGTACAACATTGAATGTATGGTAGGCGCACGTCACAAGTTTTACCTTGATGGGAAACTAAGCCTAGTGTTGTAGTGGAGAAAAGTAGATGTGTGGACTTGTTAACCACCGAATTTCAGAGTTGGAATCAATACTTTTGTGATGGTATCAACCCTTTTGAAGACCCGAAAACTCAAAGATATTTCATGTCTATATTATTGCACATAGAATTTTTACCTTATATTTGAATTGGAATATGCATATGTAAGTCAATTGATAATTAAAAGTGATTTTTCTGAACATGGTTATATCTGTCAAAATGATGTAAACATACCCGAGAAAAAAGATTGGAAGTTAAAGATCAATGTCTTTTCCAGAAATTCTCTGACCATCTTTGCGAGACTTTTATATTTGCTTGCATTTAACTTGAACTGTTATGTATGCAGGATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATC</genome_strand>
        <mrna_strand>ATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCATTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706393" ref_strand="+" ref_description="SGN-E706393 [FA29DD03]">
      <seq>cgttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgcaaggactgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttagccactggaatccgtgtagccttgagctcaagctgtaataaggaatcagtaaaaaaccaactgcagccacaaccacctcagcagaattcccaacaagttggcttgaaaatgcctccacagcagttgtcctgtataacatcaccatcttggcctgtcgatgatttactaggatttccagattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48716" stop="52062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49014" g_stop="49277" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50788" g_stop="51096" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="573" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51477" g_stop="51762" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="859" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E706393" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49014" e_stop="49277"/>
          <exon e_start="50788" e_stop="51096"/>
          <exon e_start="51477" e_stop="51762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATTAGATTATTAATAATACCATTTCACATATAGTTAATTTTGTATTTCTATGTTTAGTATTAATCACTCTGTTTCTTTTAATTCGTGTGTCTTGTTACCTTTTTAGCTCCTGATCTTCAATTCCAACATGTGACATCTTTTAAGGTCATAGTATTTAAAGGGTGTAATGTTGCCCTCAAGTTTAAGACCACTCAAGTCTCTGGCCACTTAATTAAATTTCTTGATCTGTCAACCCGAAACGCAAAATGAAAGCAGAGGGAGCAAAGGCAGATCTAGGATTTGAATCGTAGAAAAAGGTTGCACCACAAAAACAATGTGTTAAGTGGAAAATTGATCCCGAGTTCTCTATTCGAATAACTTAGCATTCAACCAATCAAGTGCACCATTAGCTTTACAAAATACATACCTAAAATATCTAGTTTCACAGAGAGACCATGATTTACAAGCCCCAAAATTAGCATATAAATTTGCCACTGAGAGGCAGTATAGTATGATAACAAAGTTCTTGCTTTTCTAGCTAAAGATATAGGGGAGAGGGAGGAATGGAGGCTTACCAGACTGCGCATCTTAAACCTCATGTCATAACCACTAAGTATCTCAAACAAGAAAGAAGTTATAGGTGTAGATAGGGCATAGTGAAAATGATTTCATGGATATGGGATAGTTTCAGAGGGCTTTGGTTCAACATCAAAGGTAGTAAGTACAACATTGAATGTATGGTAGGCGCACGTCACAAGTTTTACCTTGATGGGAAACTAAGCCTAGTGTTGTAGTGGAGAAAAGTAGATGTGTGGACTTGTTAACCACCGAATTTCAGAGTTGGAATCAATACTTTTGTGATGGTATCAACCCTTTTGAAGACCCGAAAACTCAAAGATATTTCATGTCTATATTATTGCACATAGAATTTTTACCTTATATTTGAATTGGAATATGCATATGTAAGTCAATTGATAATTAAAAGTGATTTTTCTGAACATGGTTATATCTGTCAAAATGATGTAAACATACCCGAGAAAAAAGATTGGAAGTTAAAGATCAATGTCTTTTCCAGAAATTCTCTGACCATCTTTGCGAGACTTTTATATTTGCTTGCATTTAACTTGAACTGTTATGTATGCAGGATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTG</genome_strand>
        <mrna_strand>CGTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706490" ref_strand="+" ref_description="SGN-E706490 [FA30AD11]">
      <seq>cgcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgcaaggactgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttagccactggaatccgtgtagccttgagctcaagctgtaataaggaatcagtaaaaaaccaactgcagccacaaccacctcagcagaattcccaacaagttggcttgaaaatgcctccacagcagttgtcctgtataacatcaccatcttggcctgtcgatgatttactaggatttccagattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48746" stop="52047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49044" g_stop="49277" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50788" g_stop="51096" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="543" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51477" g_stop="51747" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="814" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E706490" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49044" e_stop="49277"/>
          <exon e_start="50788" e_stop="51096"/>
          <exon e_start="51477" e_stop="51747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATTAGATTATTAATAATACCATTTCACATATAGTTAATTTTGTATTTCTATGTTTAGTATTAATCACTCTGTTTCTTTTAATTCGTGTGTCTTGTTACCTTTTTAGCTCCTGATCTTCAATTCCAACATGTGACATCTTTTAAGGTCATAGTATTTAAAGGGTGTAATGTTGCCCTCAAGTTTAAGACCACTCAAGTCTCTGGCCACTTAATTAAATTTCTTGATCTGTCAACCCGAAACGCAAAATGAAAGCAGAGGGAGCAAAGGCAGATCTAGGATTTGAATCGTAGAAAAAGGTTGCACCACAAAAACAATGTGTTAAGTGGAAAATTGATCCCGAGTTCTCTATTCGAATAACTTAGCATTCAACCAATCAAGTGCACCATTAGCTTTACAAAATACATACCTAAAATATCTAGTTTCACAGAGAGACCATGATTTACAAGCCCCAAAATTAGCATATAAATTTGCCACTGAGAGGCAGTATAGTATGATAACAAAGTTCTTGCTTTTCTAGCTAAAGATATAGGGGAGAGGGAGGAATGGAGGCTTACCAGACTGCGCATCTTAAACCTCATGTCATAACCACTAAGTATCTCAAACAAGAAAGAAGTTATAGGTGTAGATAGGGCATAGTGAAAATGATTTCATGGATATGGGATAGTTTCAGAGGGCTTTGGTTCAACATCAAAGGTAGTAAGTACAACATTGAATGTATGGTAGGCGCACGTCACAAGTTTTACCTTGATGGGAAACTAAGCCTAGTGTTGTAGTGGAGAAAAGTAGATGTGTGGACTTGTTAACCACCGAATTTCAGAGTTGGAATCAATACTTTTGTGATGGTATCAACCCTTTTGAAGACCCGAAAACTCAAAGATATTTCATGTCTATATTATTGCACATAGAATTTTTACCTTATATTTGAATTGGAATATGCATATGTAAGTCAATTGATAATTAAAAGTGATTTTTCTGAACATGGTTATATCTGTCAAAATGATGTAAACATACCCGAGAAAAAAGATTGGAAGTTAAAGATCAATGTCTTTTCCAGAAATTCTCTGACCATCTTTGCGAGACTTTTATATTTGCTTGCATTTAACTTGAACTGTTATGTATGCAGGATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATC</genome_strand>
        <mrna_strand>CGCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346580" ref_strand="+" ref_description="SGN-E346580 [cTOF-28-H9]">
      <seq>aaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgcaaggactgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttagccactggaatccgtgtagccttgagctcaagctgtaataaggaatcagtaaaaaaccaactgcagccacaaccacctcagcagaattcccaacaagttggcttgaaaatgcctccacagcagttgtcctgtataacatcaccatcttggcctgtcgatgatttactaggatttccagattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaacagcagctgaagtgcccgagctatcagtacctcagtcgagcatacaaatatttacaggacaaccaaatatcaaatgcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48767" stop="51922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49067" g_stop="49277" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50788" g_stop="51096" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="520" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51477" g_stop="51622" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="664" r_length="144" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E346580" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49067" e_stop="49277"/>
          <exon e_start="50788" e_stop="51096"/>
          <exon e_start="51477" e_stop="51622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATTAGATTATTAATAATACCATTTCACATATAGTTAATTTTGTATTTCTATGTTTAGTATTAATCACTCTGTTTCTTTTAATTCGTGTGTCTTGTTACCTTTTTAGCTCCTGATCTTCAATTCCAACATGTGACATCTTTTAAGGTCATAGTATTTAAAGGGTGTAATGTTGCCCTCAAGTTTAAGACCACTCAAGTCTCTGGCCACTTAATTAAATTTCTTGATCTGTCAACCCGAAACGCAAAATGAAAGCAGAGGGAGCAAAGGCAGATCTAGGATTTGAATCGTAGAAAAAGGTTGCACCACAAAAACAATGTGTTAAGTGGAAAATTGATCCCGAGTTCTCTATTCGAATAACTTAGCATTCAACCAATCAAGTGCACCATTAGCTTTACAAAATACATACCTAAAATATCTAGTTTCACAGAGAGACCATGATTTACAAGCCCCAAAATTAGCATATAAATTTGCCACTGAGAGGCAGTATAGTATGATAACAAAGTTCTTGCTTTTCTAGCTAAAGATATAGGGGAGAGGGAGGAATGGAGGCTTACCAGACTGCGCATCTTAAACCTCATGTCATAACCACTAAGTATCTCAAACAAGAAAGAAGTTATAGGTGTAGATAGGGCATAGTGAAAATGATTTCATGGATATGGGATAGTTTCAGAGGGCTTTGGTTCAACATCAAAGGTAGTAAGTACAACATTGAATGTATGGTAGGCGCACGTCACAAGTTTTACCTTGATGGGAAACTAAGCCTAGTGTTGTAGTGGAGAAAAGTAGATGTGTGGACTTGTTAACCACCGAATTTCAGAGTTGGAATCAATACTTTTGTGATGGTATCAACCCTTTTGAAGACCCGAAAACTCAAAGATATTTCATGTCTATATTATTGCACATAGAATTTTTACCTTATATTTGAATTGGAATATGCATATGTAAGTCAATTGATAATTAAAAGTGATTTTTCTGAACATGGTTATATCTGTCAAAATGATGTAAACATACCCGAGAAAAAAGATTGGAAGTTAAAGATCAATGTCTTTTCCAGAAATTCTCTGACCATCTTTGCGAGACTTTTATATTTGCTTGCATTTAACTTGAACTGTTATGTATGCAGGATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTA</genome_strand>
        <mrna_strand>AAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAAC-AACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGC-ATACAAATATTTACAGGACAACCAAATATCAAATGCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734267" ref_strand="+" ref_description="SGN-E734267 [LB12AH06]">
      <seq>ggaatcagtaaaaaaccaactgcagccacaaccacctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgcaaggactgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttagccactggaatccgtgtagccttgagctcaagctgtaataaggaatcagttgtcctgtataacatcaccatcttggcctgtcgatgatttactaggatttccagattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaagatactccttatcttgcttactttcgcagtgcgctcatattgtcaacagacatgttcagtaagtagaggaaacactattctgcttaagatatcctttatcttgcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50474" stop="52216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50788" g_stop="50944" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="212" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50945" i_stop="51018" i_length="74">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51019" g_stop="51096" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="290" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51477" g_stop="51915" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="729" r_length="439" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="730" polyA_stop="740"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E734267" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50788" e_stop="50944"/>
          <exon e_start="51019" e_stop="51096"/>
          <exon e_start="51477" e_stop="51915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTAC</genome_strand>
        <mrna_strand>GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAAT..........................................................................CAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379007" ref_strand="+" ref_description="SGN-E379007 [TUS-1-E11](-)">
      <seq>ctgtgttgaggatagagctctcttttgcaaggactgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttagccactggaatccgtgtagccttgagctcaagctgtaataaggaatcagtaaaaaaccaactgcagccacaaccacctcagcagaattcccaacaagttggcttgaaaatgcctccacagcagttgtcctgtataacatcaccatcttggcctgtcgatgatttactaggatttccagattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaagatactccttatcttgcttactttcgcagtgcggacatattgtcaacagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50508" stop="52158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50808" g_stop="51096" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51477" g_stop="51858" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="671" r_length="382" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E379007" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50808" e_stop="51096"/>
          <exon e_start="51477" e_stop="51858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGAC</genome_strand>
        <mrna_strand>CTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGGACATATTGTCAACAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544773" ref_strand="+" ref_description="SGN-E544773 [TUS-67-E12](-)">
      <seq>gttgaggatagagctctcttttgcaaggactgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttagccactggaatccgtgtagccttgagctcaagctgtaataaggaatcagtaaaaaaccaactgcagccacaaccacctcagcagaattcccaacaagttggcttgaaaatgcctccacagcagttgtcctgtataacatcaccatcttggcctgtcgatgatttactaggatttccagattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaagatactccttatcttgcttactttcgcagtgcgctcatattgtcaacagacatgttcagtaagtagaggaaacactattctgcttaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50512" stop="52198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50812" g_stop="51096" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51477" g_stop="51895" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="704" r_length="419" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="705" polyA_stop="718"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E544773" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50812" e_stop="51096"/>
          <exon e_start="51477" e_stop="51895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAG</genome_strand>
        <mrna_strand>GTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552126" ref_strand="+" ref_description="SGN-E552126 [cTSB-2-O24]">
      <seq>agctctcttttgcaaggactgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttacccactggaatccgtgtagccttgagctcaagctgtaataaggaatcagtaaaaaaccaactgcagccacaaccacctcagcagaattcccaacaagttggcttgaaaatgcctccacagcagttgtcctgtataacatcaccatcttggcctgtcgatgatttactaggatttccagattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaagatactccttatcttgcttactttcgcagtgcgctcatattgtcaacagacatgttcagtaagtagaggaaacactattctgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50523" stop="52192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50823" g_stop="51096" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51477" g_stop="51892" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="690" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E552126" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50823" e_stop="51096"/>
          <exon e_start="51477" e_stop="51892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTT</genome_strand>
        <mrna_strand>AGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTACCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552181" ref_strand="+" ref_description="SGN-E552181 [cTSB-3-B24]">
      <seq>agctctcttttgcaaggactgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttacccactggaatccgtgtagccttgagctcaagctgtaataaggaatcagtaaaaaaccaactgcagccacaaccacctcagcagaattcccaacaagttggcttgaaaatgcctccacagcagttgtcctgtataacatcaccatcttggcctgtcgatgatttactaggatttccagattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaagatactccttatcttgcttactttcgcagtgcgctcatattgtcaacagacatgttcagtaagtagaggaaacactattctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50523" stop="52191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50823" g_stop="51096" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51477" g_stop="51891" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="689" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E552181" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50823" e_stop="51096"/>
          <exon e_start="51477" e_stop="51891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCT</genome_strand>
        <mrna_strand>AGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTACCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696239" ref_strand="+" ref_description="SGN-E696239 [LH_Ea08J21](-)">
      <seq>gcaaggactgtgacgaagcaattcattcagccagcagcctcgttaagaaccaccaacgcttcttagccactggaatccgtgtagccttgagctcaagctgtaataaggaatcagtaaaaaaccaactgcagccacaaccacctgagcagaattcccaacaagttggcttgaaaatgcctccacagcaattgtccggtataacatcaccatcttggcctgtcgatgatttactaggatttccagattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttaggaggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagcccaggattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattattctgcttaagatactccttatcttgcttactttcgcagtgcgctcatattgtcaacagacatgttcagtaagtagaggaaacactattctgcttaagatatcctttatcttgcttactttttgcctccttggtagaattgcatcaattttttcttcttatagcaattgaagaacatattgatgcattcttggacatgctatgcatatagcgacatagtaaaatctggtttgtaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50534" stop="52340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50834" g_stop="51096" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51477" g_stop="52030" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="816" r_length="553" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="818" polyA_stop="841"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E696239" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50834" e_stop="51096"/>
          <exon e_start="51477" e_stop="52030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTACATTTCGCCTCCTTGGTAGAATTGCATCAATTTCTTCTTCTTATAGCAATTTTATAAACATATTGATGCATTCTTGGACATGCTATGCATATTGCTACATAGTAAAATCTGGTTTT</genome_strand>
        <mrna_strand>GCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGTTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTGAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAATTGTCCGGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGAGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGCCCAGGATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTATTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTACTTTTTGCCTCCTTGGTAGAATTGCATCAATTTTTTCTTCTTATAGCAA-TTGAAGAACATATTGATGCATTCTTGGACATGCTATGCATATAGCGACATAGTAAAATCTGGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540083" ref_strand="+" ref_description="SGN-E540083 [TUS-60-C21](-)">
      <seq>ctgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttagccactggaatccgtgtagccttgaaaatgcctccacagcagttgtcctgtataacatcaccatcttggcctgtcgatgatttactaggatttccagattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattttctgcttaaaaaaaaaaaaaagaaaaaaaaaaactcgaggggggcccggtccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50541" stop="62963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50841" g_stop="50913" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50914" i_stop="50994" i_length="81">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50995" g_stop="51096" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="175" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51477" g_stop="51809" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="507" r_length="332" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51810" i_stop="52535" i_length="726">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52536" g_stop="52578" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="550" r_length="43" r_score="0.605"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E540083" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50841" e_stop="50913"/>
          <exon e_start="50995" e_stop="51096"/>
          <exon e_start="51477" e_stop="51809"/>
          <exon e_start="52536" e_stop="52578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTACATTTCGCCTCCTTGGTAGAATTGCATCAATTTCTTCTTCTTATAGCAATTTTATAAACATATTGATGCATTCTTGGACATGCTATGCATATTGCTACATAGTAAAATCTGGTTTTGTTACAAGAACTACTCCACAGTTGTGATTTTACCTTGTAGACTCTACCCTAGGAACAAATTTTCTTGGCAACAACTCCTCTATCTCTAGTTGTGCTACAGCAATTGAGTTAGTAATTTTGCGCTGGTTATGCTCTATATTTTTGCAACATTCATGTTCCAAGCGCCAGTTTTCCTGGGAGCCTCTTGCAATCCTTCATCAATTACTGCACACAACAGTTGAAGCTATGATCGAACTCATGAACTCTTGGGCAAAATTCCCAACTTTACTAGGATTTGATGACAAATGAAATAGGTGAAAACTATGTCTACTAGAATATAGAATTGGATAATGAAATACTAGTATGATGATGTAAAGGAGAAGTTACAAGGAAGCTGCATATGAAGAAAGCTTAGTTTATTAAGTGTCTTGATGGACATTCATCACAACAAAACATTAAAATCCAAAACTGAAAAGGCTTCCTACTAGCTTCAAAAAAACTCATAAAGGGGGGGAAATATATGAAGATGGAAAAAAGAAAAAAGATAACACGATGTTTCTATGCTCCTC</genome_strand>
        <mrna_strand>CTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGT.................................................................................GTAGCCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATT-TTCTGCTTAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAGAAAAAAAAAAACTCGAGGGGGGCCCGGTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540086" ref_strand="+" ref_description="SGN-E540086 [TUS-60-C21]">
      <seq>ctgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttagccactggaatccgtgtagccttgaaaatgcctccacagcagttgtcctgtataacatcaccatcttggcctgtcgatgatttactaggatttccagattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50541" stop="52111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50841" g_stop="50913" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50914" i_stop="50994" i_length="81">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50995" g_stop="51096" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="175" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51477" g_stop="51808" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="507" r_length="332" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="523"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E540086" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50841" e_stop="50913"/>
          <exon e_start="50995" e_stop="51096"/>
          <exon e_start="51477" e_stop="51808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAG</genome_strand>
        <mrna_strand>CTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGT.................................................................................GTAGCCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696269" ref_strand="+" ref_description="SGN-E696269 [LH_Ea08L03](-)">
      <seq>aagcaattcattcagccagcagcctcgttaagaaccaccaacgcttcttagccactggaatccgtgtagccttgagctcaagctgtaataaggaatcagtaaaaaaccaactgcagccacaaccacctgagcagaattcccaacaagttggcttgaaaatgcctccacagcaattgtccggtataacatcaccatcttggcctgtcgatgatttactaggatttccagattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttaggaggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagcccaggattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattattctgcttaagatactccttatcttgcttactttcgcagtgcgctcatattgtcaacagacatgttcagtaagtagaggaaacactattctgcttaagatatcctttatcttgcttactttttgcctccttggtagaattgcatcaattttttcttcttatagcaattgaggaacatattgatgcattcttggacatgctatgcataaaacgacatagtaaaatctggtttgttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50549" stop="52340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50849" g_stop="51096" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51477" g_stop="52049" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="819" r_length="571" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E696269" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50849" e_stop="51096"/>
          <exon e_start="51477" e_stop="52049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTACATTTCGCCTCCTTGGTAGAATTGCATCAATTTCTTCTTCTTATAGCAATTTTATAAACATATTGATGCATTCTTGGACATGCTATGCATATTGCTACATAGTAAAATCTGGTTTTGTTACAAGAACTACTCCAC</genome_strand>
        <mrna_strand>AAGCAATTCATTCAGCCAGCAGCCTCGTTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTGAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAATTGTCCGGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGAGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGCCCAGGATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTATTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTACTTTTTGCCTCCTTGGTAGAATTGCATCAATTTTTTCTTCTTATAGCAA-TTGAGGAACATATTGATGCATTCTTGGACATGCTATGCATAAAACGACATAGTAAAATCTGG-TTTGTTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734858" ref_strand="+" ref_description="SGN-E734858 [LB13DB06]">
      <seq>gtagccttgagctcaagctgtaataaggaatcagtaaaaaaccaactgcagccacaaccacctcagcagaattcccaacaagttggcttgaaaatgcctccacagcagttgtcctgtataacatcaccatcttggcctgtcgatgatttactaggatttccagattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaagatactccttatcttgcttactttcgcagtgcgctcatattgtcaacagacatgttcagtaagtagaggaaacactattctgcttaagatatcctttatcttgcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50614" stop="52216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50914" g_stop="51096" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51477" g_stop="51915" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="622" r_length="439" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E734858" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50914" e_stop="51096"/>
          <exon e_start="51477" e_stop="51915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTAC</genome_strand>
        <mrna_strand>GTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230836" ref_strand="+" ref_description="SGN-E230836 [cLEL-35-I9](-)">
      <seq>cagtaaaaaaccaactgcagccacaaccacctcagcagaattcccaacaagttggcttgaaaatgcctccacagcagttgtcctgtataacatcaccatcttggcctgtcgatgatttactaggatttccagattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaagataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50645" stop="52111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50945" g_stop="51096" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51477" g_stop="51808" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="484" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="505"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E230836" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50945" e_stop="51096"/>
          <exon e_start="51477" e_stop="51808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAG</genome_strand>
        <mrna_strand>CAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230476" ref_strand="+" ref_description="SGN-E230476 [cLEL-35-I9](-)">
      <seq>ccagattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaagataccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50773" stop="52112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51073" g_stop="51096" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51477" g_stop="51812" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="360" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="362" polyA_stop="377"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E230476" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51073" e_stop="51096"/>
          <exon e_start="51477" e_stop="51812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATAC</genome_strand>
        <mrna_strand>CCAGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227224" ref_strand="+" ref_description="SGN-E227224 [cLEL-30-P20](-)">
      <seq>cagattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacagggcaaccaaatatcgaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaagatactccttatcttgcttactttcgcagtgcgctcatattgtcaacagacatgttcagtaagtagaggaaacactattctgcttaagatatcctttatcttgcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50774" stop="52216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51074" g_stop="51096" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51477" g_stop="51915" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="462" r_length="439" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="463" polyA_stop="478"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E227224" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51074" e_stop="51096"/>
          <exon e_start="51477" e_stop="51915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTAC</genome_strand>
        <mrna_strand>CAGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGGCAACCAAATATCGAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226594" ref_strand="+" ref_description="SGN-E226594 [cLEL-26-M14](-)">
      <seq>agattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggtcaaccaaatatcgaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaagatactccttatcttgcttactttcgcagtgcgctcatattgtcaacagacatgttcagtaagtagaggaaacactattctgaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50775" stop="52198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51075" g_stop="51096" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51477" g_stop="51895" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="441" r_length="419" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="442" polyA_stop="455"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E226594" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51075" e_stop="51096"/>
          <exon e_start="51477" e_stop="51895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAG</genome_strand>
        <mrna_strand>AGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGTCAACCAAATATCGAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303678" ref_strand="+" ref_description="SGN-E303678 [cLEY-7-E19]">
      <seq>agattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaagatactccttatcttgcttactttcgcagtgcgctcatattgtcaacagacatgttcagtaagtagaggaaacactattctgcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50775" stop="52198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51075" g_stop="51096" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51477" g_stop="51895" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="441" r_length="419" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E303678" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51075" e_stop="51096"/>
          <exon e_start="51477" e_stop="51895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAG</genome_strand>
        <mrna_strand>AGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390317" ref_strand="+" ref_description="SGN-E390317 [TUS-17-G21](-)">
      <seq>tttgcaagtatcctatattttctaccacttgggttggtggctggcggattgacgtatagaggacttctctagatgagaagctatcgattttcttggtaatgcagcttatgcatagcattgaacttgaatttgaaacactcaaatatgcaaaacgacttccttagattcctcgatacatagggagacattttatgacaccattacatgtatatacgaagttggccttgggtatattccggtgtcagtttaatatgtgaaactgtggtgaccattgattcagtatattacggtgtcattgtctgttcatttaatatgtaatgaataacctatatattggttgtttcaatttaatacagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50821" stop="52111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51121" g_stop="51808" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="689" polyA_stop="703"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E390317" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51121" e_stop="51808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAG</genome_strand>
        <mrna_strand>TTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTTTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATTTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATTTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226076" ref_strand="+" ref_description="SGN-E226076 [cLEL-31-O3](-)">
      <seq>gtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagagaaagtattgttctgcttaagatactccttatcttgcttactttcgcagtgcgctcatattgtcaacagacatgttcagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51196" stop="52181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51496" g_stop="51865" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="373" polyA_stop="389"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E226076" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51496" e_stop="51865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCA</genome_strand>
        <mrna_strand>GTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAGAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223853" ref_strand="+" ref_description="SGN-E223853 [cLEL-19-A5](-)">
      <seq>cccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaagatactccttatcttgcttactttcgcagtgcgctcatattgtcaacagacatgttcagtaagtagaggaaacactattctgcttaagatatcctttatcttgcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51255" stop="52216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51555" g_stop="51915" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="362" polyA_stop="376"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E223853" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51555" e_stop="51915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTAC</genome_strand>
        <mrna_strand>CCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227437" ref_strand="+" ref_description="SGN-E227437 [cLEL-30-P22](-)">
      <seq>gagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccnaaatatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaagatactccttatcttgcttactttcgcagtgcgctcatattgtcaacagacatgttcagtaagtagaggaaacactattctgcttaagatatcctttatcttgcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51258" stop="52216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51558" g_stop="51915" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="360" polyA_stop="375"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E227437" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51558" e_stop="51915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACC-AAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTAC</genome_strand>
        <mrna_strand>GAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCNAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229651" ref_strand="+" ref_description="SGN-E229651 [cLEL-4-M3](-)">
      <seq>tatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaagatactccttatcttgcttactttcgcagtgcgctcatattgtcaacagacatgttcagtaagtagaggaaacactattctgcttaagatatcctttatcttgattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51262" stop="52216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51562" g_stop="51895" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="353" polyA_stop="370"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E229651" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51562" e_stop="51895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAG</genome_strand>
        <mrna_strand>TATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220234" ref_strand="+" ref_description="SGN-E220234 [cLEL-12-A24](-)">
      <seq>tatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttcctgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagaaagtacccaaagtattgttctgcttaagataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51309" stop="52111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51609" g_stop="51808" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="201" polyA_stop="221"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E220234" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>200</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51609" e_stop="51808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAG</genome_strand>
        <mrna_strand>TATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTCCTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGAAAGTACCCAAAGTATTGTTCTGCTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224264" ref_strand="+" ref_description="SGN-E224264 [cLEL-19-A5](-)">
      <seq>caaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaagatactccttatcttgcttactttcgcagtgcgctcatattgtcaacagacatgttcagtaagtagaggaaacactattctgcttaagatatcctttatcttgcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51312" stop="52216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51612" g_stop="51915" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="305" polyA_stop="319"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E224264" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51612" e_stop="51915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTAC</genome_strand>
        <mrna_strand>CAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222698" ref_strand="+" ref_description="SGN-E222698 [cLEL-16-G4](-)">
      <seq>gaagtccagaattgaaatcccagatgatgatgcagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaagatactccttatcttgcttactttcgcagtgcgctcatattgtcaacagacatgttcagtaagtagaggaaacactattctgcttaagatatcctttatcttgcttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51326" stop="52216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51626" g_stop="51915" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="292" polyA_stop="310"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E222698" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51626" e_stop="51915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTCCAGAATTGAAATCCCAGATGATGATG-AGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTAC</genome_strand>
        <mrna_strand>GAAGTCCAGAATTGAAATCCCAGATGATGATGCAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226426" ref_strand="+" ref_description="SGN-E226426 [cLEL-26-M14](-)">
      <seq>agtccagaattgaaatcccagatcatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaagatactccttatcttgcttactttcgcagtgcgctcatattgtcaacagacatgttcagtaagtagaggaaacactattctgcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51328" stop="52198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51628" g_stop="51895" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="269" polyA_stop="282"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E226426" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51628" e_stop="51895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAG</genome_strand>
        <mrna_strand>AGTCCAGAATTGAAATCCCAGATCATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220250" ref_strand="+" ref_description="SGN-E220250 [cLEL-12-C8](-)">
      <seq>tgaaatcccagatgatgataagtattttactgtccccgatcttggttgaaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaagatactccttatcttgcttactttcgcagtgcgctcatattgtccccagacatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51338" stop="52163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51638" g_stop="51863" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E220250" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51638" e_stop="51863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTG-AACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTT</genome_strand>
        <mrna_strand>TGAAATCCCAGATGATGATAAGTATTTTACTGTCCCCGATCTTGGTTGAAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCCCCAGACATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308522" ref_strand="+" ref_description="SGN-E308522 [cLEY-21-L1]">
      <seq>aagtttccaattaaatgtgcatgtgtgccttgtgtgtagtacttaatcagtgctctcatacctgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaagatacctccttatcttgcttacctttcgcagtgcgctcatattgtcaacagacatgttcagtaagtagaggaaacactattctgcttaagatatcctttatcttgcttacatttcgcctccttggtagaattgcatcaatttcttcttcttatagcaattttataaacatattgatgcattcttggacatgctatgcatattgctacatagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51401" stop="52321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51701" g_stop="52020" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E308522" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51701" e_stop="52020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTCCAATTAAATGTGCATGTGTG-CTTGTGTGTAGTACTTAATCAGTGCTCTCATA-CTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATA-CTCCTTATCTTGCTTA-CTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTACATTTCGCCTCCTTGGTAGAATTGCATCAATTTCTTCTTCTTATAGCAATTTTATAAACATATTGATGCATTCTTGGACATGCTATGCATATTGCTACATAGTAAA</genome_strand>
        <mrna_strand>AAGTTTCCAATTAAATGTGCATGTGTGCCTTGTGTGTAGTACTTAATCAGTGCTCTCATACCTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACCTCCTTATCTTGCTTACCTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTACATTTCGCCTCCTTGGTAGAATTGCATCAATTTCTTCTTCTTATAGCAATTTTATAAACATATTGATGCATTCTTGGACATGCTATGCATATTGCTACATAGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222611" ref_strand="+" ref_description="SGN-E222611 [cLEL-16-G2](-)">
      <seq>gatatgttcagtaaagtagaaaaagtattgttctgcttaagatactccttatcttgcttactttcgcagtgcgctcataatgtcaacagacatgttcagtaagtagaggaaacactattctgcttaagatatcctttatcatgcctcccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51469" stop="57716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51769" g_stop="51915" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51916" i_stop="52538" i_length="623">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52539" g_stop="52557" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="167" r_length="19" r_score="0.789"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E222611" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>166</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51769" e_stop="51915"/>
          <exon e_start="52539" e_stop="52557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATGTTCAGT-AAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTACATTTCGCCTCCTTGGTAGAATTGCATCAATTTCTTCTTCTTATAGCAATTTTATAAACATATTGATGCATTCTTGGACATGCTATGCATATTGCTACATAGTAAAATCTGGTTTTGTTACAAGAACTACTCCACAGTTGTGATTTTACCTTGTAGACTCTACCCTAGGAACAAATTTTCTTGGCAACAACTCCTCTATCTCTAGTTGTGCTACAGCAATTGAGTTAGTAATTTTGCGCTGGTTATGCTCTATATTTTTGCAACATTCATGTTCCAAGCGCCAGTTTTCCTGGGAGCCTCTTGCAATCCTTCATCAATTACTGCACACAACAGTTGAAGCTATGATCGAACTCATGAACTCTTGGGCAAAATTCCCAACTTTACTAGGATTTGATGACAAATGAAATAGGTGAAAACTATGTCTACTAGAATATAGAATTGGATAATGAAATACTAGTATGATGATGTAAAGGAGAAGTTACAAGGAAGCTGCATATGAAGAAAGCTTAGTTTATTAAGTGTCTTGATGGACATTCATCACAACAAAACATTAAAATCCAAAACTGAAAAGGCTTCCTACTAGCTTCAAAAAAACTCATAAAGGGGGGGAAATATATGAAGATGGAAAAAAGAAAAAAGATAA</genome_strand>
        <mrna_strand>GATATGTTCAGTAAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATAATGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCATGCCTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303624" ref_strand="+" ref_description="SGN-E303624 [cLEY-6-M13]">
      <seq>tggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatctgaagccctcactttgctcaagggaggagcatagaaacatcgtgttatcttttttcttttttccatcttcatatatttccccccctttatgagtttttttgaagctagtaggaagccttttcagttttggattttaatgttttgttgtgatgaatgtccatcaagacacttaataaactaagctttcttcatatgcagcttccttgtaacttctcctttacatcatcatactagtatttcattatccaattctatattctagtagacatagttttcacctatttcatttgtcatcaaatcctagtaaagttgggaattttgcccaagagttnaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52955" stop="51969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52655" g_stop="52270" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="387" polyA_stop="402"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E303624" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52655" e_stop="52270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCATATGCAGCTTCCTTGTAACTTCTCCTTTACATCATCATACTAGTATTTCATTATCCAATTCTATATTCTAGTAGACATAGTTTTCACCTATTTCATTTGTCATCAAATCCTAGTAAAGTTGGGAATTTTGCCCAAGAGTTC</genome_strand>
        <mrna_strand>TGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCATATGCAGCTTCCTTGTAACTTCTCCTTTACATCATCATACTAGTATTTCATTATCCAATTCTATATTCTAGTAGACATAGTTTTCACCTATTTCATTTGTCATCAAATCCTAGTAAAGTTGGGAATTTTGCCCAAGAGTTN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303665" ref_strand="+" ref_description="SGN-E303665 [cLEY-6-M13](-)">
      <seq>gtggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatctgaagccctcactttgctcaagggaggagcatagaaacatcgtgttatcttttttcttttttccatcttcatatatttccccccctttatgagtttttttgaagctagtaggaagccttttcagttttggattttaatgttttgttgtgatgaatgtccatcaagacacttaataaactaagctttcttcatatgcagcttccttgtaacttctcctttacatcatcatactagtatttcattatccaattctatattctagtagacatagttttcacctatttcatttgtcatcaaatcctagtaaagttgggaattttgcccaagagttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52956" stop="51969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52656" g_stop="52274" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="387" polyA_stop="402"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E303665" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52656" e_stop="52274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCATATGCAGCTTCCTTGTAACTTCTCCTTTACATCATCATACTAGTATTTCATTATCCAATTCTATATTCTAGTAGACATAGTTTTCACCTATTTCATTTGTCATCAAATCCTAGTAAAGTTGGGAATTTTGCCCAAGA</genome_strand>
        <mrna_strand>GTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCATATGCAGCTTCCTTGTAACTTCTCCTTTACATCATCATACTAGTATTTCATTATCCAATTCTATATTCTAGTAGACATAGTTTTCACCTATTTCATTTGTCATCAAATCCTAGTAAAGTTGGGAATTTTGCCCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350794" ref_strand="+" ref_description="SGN-E350794 [cTOS-7-L14]">
      <seq>tcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggttgaaggaagtacttaggttttcatgtgcatgtggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatctgaagccctcactttgctcaagggaggagcatagaaacatcgtgttatcttttttcttttttccatcttcatatatttccccccctttatgagtttttttgaagctagtaggaagccttttcagntttggattttaatgttttgttgtgatgaatgtccatcaagacacttaataaactaagctttcttcatatgcagcttccttgtaacttctcctttacatcatcatactaggatttcattatcccaattctatattctagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53613" stop="52032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53313" g_stop="53204" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="227" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52699" g_stop="52328" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="600" r_length="373" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E350794" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53313" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCATATGCAGCTTCCTTGTAACTTCTCCTTTACATCATCATACTAGTATTTCATTAT-CCAATTCTATATTCTAGTAGACATAGTTT</genome_strand>
        <mrna_strand>TCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGNTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCATATGCAGCTTCCTTGTAACTTCTCCTTTACATCATCATACTAGGATTTCATTATCCCAATTCTATATTCTAGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716116" ref_strand="+" ref_description="SGN-E716116 [FB16AF08]">
      <seq>tgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggttgaaggaagtacttaggttttcatgtgcatgtggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatctgaagccctcactttgctcaagggaggagcatagaaacatcgtgttatcttttttcttttttccatcttcatatatttccccccctttatgagtttttttgaagctagtaggaagccttttcagttttggattttaatgttttgttgtgatgaatgtccatcaagacacttaataaactaagctttcttcatatgcagcttccttgtaacttctcctttacatcatcatactagtatttcattatccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53577" stop="52053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53277" g_stop="53204" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="191" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52699" g_stop="52345" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="546" r_length="355" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E716116" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53277" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCATATGCAGCTTCCTTGTAACTTCTCCTTTACATCATCATACTAGTATTTCATTATCCAATTCTATAT</genome_strand>
        <mrna_strand>TGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCATATGCAGCTTCCTTGTAACTTCTCCTTTACATCATCATACTAGTATTTCATTATCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744944" ref_strand="+" ref_description="SGN-E744944 [GI|2102692]">
      <seq>ggcacgagaaaatctatagatacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggttgaaggaagtacttaggttttcatgtgcatgtggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatctgaagccctcactttgctcaagggaggagcatagaaacatcgtgttatcttttttcttttttccatcttcatatatttccccccctttatgagtttttttgaagctagtaggaagccttttcagttttggattttaatgttttgttgtgatgaatgtccatcaagacacttaataaactaagctttcttcatatgcagcttccttgtaacttctcctttacatcatcatactagtatttcattatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55221" stop="52055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54929" g_stop="54464" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53204" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="799" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="916" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52699" g_stop="52355" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="917" r_stop="1261" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E744944" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54929" e_stop="54464"/>
          <exon e_start="53536" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCATATGCAGCTTCCTTGTAACTTCTCCTTTACATCATCATACTAGTATTTCATTATCC</genome_strand>
        <mrna_strand>GGCACGAGAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCATATGCAGCTTCCTTGTAACTTCTCCTTTACATCATCATACTAGTATTTCATTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744593" ref_strand="+" ref_description="SGN-E744593 [GI|1915973]">
      <seq>cggcacgagtacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggttgaaggaagtacttaggttttcatgtgcatgtggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatctgaagccctcactttgctcaagggaggagcatagaaacatcgtgttatcttttttcttttttccatcttcatatattccccccctttatgagtttttttgaagctagtaggaagccttttcagttttggattttaatgttttgttgtgatgaatgtccatcaagacacttaataaactaagctttcttcatatgcagcttccttgtaacttctcctttacatcatcatactagtatttcattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55211" stop="52058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54919" g_stop="54464" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53204" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="788" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="905" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52699" g_stop="52359" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="906" r_stop="1245" r_length="340" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1246" polyA_stop="1263"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E744593" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1247</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54919" e_stop="54464"/>
          <exon e_start="53536" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCATATGCAGCTTCCTTGTAACTTCTCCTTTACATCATCATACTAGTATTTCATT</genome_strand>
        <mrna_strand>CGGCACGAG-TACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATA-TTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCATATGCAGCTTCCTTGTAACTTCTCCTTTACATCATCATACTAGTATTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694560" ref_strand="+" ref_description="SGN-E694560 [LH_Ea04D22](-)">
      <seq>cctcgtgctgaattcggcacgaggtgtccttgtggcatcctaacttgaaggtactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggttgaaggaagtacttaggttttcatgtgcatgtggagccatcattacaaccaagaaaggagcaatcccagctttgcctactgcatctgaagccctcactttgttcaagggaggagcatagaaacatcatgttatcttttttcttttttccgtcttcatatatttccccccctttatgagttttttttaacttcgaagctagtaggaagccttttcagttatggattttaatgttttgttgtgatgaatgtccatccattaaaaggaataaactaagctttcttcataggcatcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53577" stop="52101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53277" g_stop="53204" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="98" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="215" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52699" g_stop="52397" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="526" r_length="311" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="527" polyA_stop="539"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E694560" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53277" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAG---TTTTT---TT-GAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCAT-CAAGACACTTAATAAACTAAGCTTTCTTCATATGCAGCTTCCTT</genome_strand>
        <mrna_strand>TGTCCTTGTGGCATCCTAACTTGAAGGTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCATTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGTTCAAGGGAGGAGCATAGAAACATCATGTTATCTTTTTTCTTTTTTCCGTCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTTAACTTCGAAGCTAGTAGGAAGCCTTTTCAGTTATGGATTTTAATGTTTTGTTGTGATGAATGTCCATCCATTAAAAGGAATAAACTAAGCTTTCTTCATAGGCATCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690720" ref_strand="+" ref_description="SGN-E690720 [LH_Ea04D22]">
      <seq>cccataaaggtgccgaattcggcacgaggggtccttgtggccttctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggttgaaggaagtacttatgttttcatgtgcatgtggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatctgaagccctcactttgctcaagggaggagcatagaaacatcatgttatcttttttcttttttccgtcttcatatatttccccccctttatgagttttttttaactttgaagctagtaggaagccttttcagttttggattttaatgttttgttgtgatgaatgtccatcgaggcacttaataaactaagctttcttcataggcatcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53576" stop="52101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53276" g_stop="53204" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="103" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="220" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52699" g_stop="52397" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="530" r_length="310" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E690720" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53276" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAG----TTTT---TTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCATATGCAGCTTCCTT</genome_strand>
        <mrna_strand>GTCCTTGTGGCCTTCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTATGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCATGTTATCTTTTTTCTTTTTTCCGTCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTTAACTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCGAGGCACTTAATAAACTAAGCTTTCTTCATAGGCATCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283372" ref_strand="+" ref_description="SGN-E283372 [cLER-12-A6]">
      <seq>ttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggttgaaggaagtacttaggttttcatgtgcatgtggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatctgaagccctcactttgctcaagggaggagcatagaaacatcgagttatcttttttcttttttccatcttcatatatttccccccctttatgagtttttttgaagctagtaggaagccttttcagttttggattttaatgttttgttgtgatgaatgtccatcaagacacttaataaactaagctttcttcatatgcagcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53135" stop="52101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52835" g_stop="52784" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52699" g_stop="52397" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="355" r_length="303" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E283372" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52835" e_stop="52784"/>
          <exon e_start="52699" e_stop="52397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCATATGCAGCTTCCTT</genome_strand>
        <mrna_strand>TTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGAGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCATATGCAGCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376471" ref_strand="+" ref_description="SGN-E376471 [TUS-17-J15](-)">
      <seq>agcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggttgaaggaagtacttaggttttcatgtgcatgtggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatctgaagccctcactttgctcaagggaggagcatagaaacatcgtgttatcttttttcttttttccatcttcatatatttccccccctttatgagtttttttgaagctagtaggaagccttttcagttttggattttaatgttttgttgtgatgaatgtccatcaagacacttaataaactaagctttcttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53783" stop="52109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53483" g_stop="53204" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="397" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52699" g_stop="52403" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="694" r_length="297" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E376471" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53483" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCATATGCAGC</genome_strand>
        <mrna_strand>AGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695762" ref_strand="+" ref_description="SGN-E695762 [LH_Ea07F24](-)">
      <seq>tcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagctaaggaggcaggggcattgctctcttatgaccctaaccttcgtttgccgttgtggccttcagcagaagaagccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattttcgaggatgaagcaaggttgaaggaagtacttaggttttcatgtgcatgtggagccatcactacaaccaagaaaggagcaatcccagctttgcctattgcatttgaagccctcactttgctcaagggaggagcatagaaacatcatgttatcttttttctgggttccgtcttcatatatttccccccctttatgagttttttttaactttgaagatagtaggaagcctttttaaagttggattttaatgttttgttntgatgaatggcccttaaaagttttaataaactaagctttcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53858" stop="52111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53536" g_stop="53204" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="352" r_length="333" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="469" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52699" g_stop="52411" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="765" r_length="296" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E695762" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53536" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAG----TTTT---TTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCA</genome_strand>
        <mrna_strand>GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCTAAGGAGGCAGGGGCATTGCTCTCTTATGACCCTAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAAGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTTTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTATTGCATTTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCATGTTATCTTTTTTCTGGGTTCCGTCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTTAACTTTGAAGATAGTAGGAAGCCTTTTTAAAGTTGGATTTTAATGTTTTGTTNTGATGAATGGCCCTTAAAAGTTTTAATAAACTAAGCTTTCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304591" ref_strand="+" ref_description="SGN-E304591 [cLEX-11-P3]">
      <seq>aatcccagctttgcctactgcatctgaagccctcactttgctcaagggaggagcatagaaacatcgcgttatctattttcttttatccatcttcatatatttccccccctttatgagtttttttgaagctagtaggaagccttttcagttctggattttaatgttttgttgtgatgaatgtccatcaagacacttaataaactaagctttcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52925" stop="52111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52625" g_stop="52411" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E304591" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>215</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52625" e_stop="52411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCA</genome_strand>
        <mrna_strand>AATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGCGTTATCTATTTTCTTTTATCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTCTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695341" ref_strand="+" ref_description="SGN-E695341 [LH_Ea06E11](-)">
      <seq>cagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagctaaggaggcaggggcattgctctcttatgaccctaaccttcgtttgccgttgtggccttcagcagaagaagccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggttgaaggaagtacttaggttttcatgtgcatgtggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatctgaagccctccctttgctcaagggaggagcatagaaacatcatgttatcttttttcttttttccgtcttcatatatttccccccctttatgagttttttttaactttgaagctagtaggaaacaggttcagttttggattttaatgttttgttgtgaagaatgaccggcaaggcacttaataaactaagctttcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54827" stop="52109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54527" g_stop="54464" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53204" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="397" r_length="333" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="514" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52699" g_stop="52412" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="809" r_length="295" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="810" polyA_stop="821"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E695341" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54527" e_stop="54464"/>
          <exon e_start="53536" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAG----TTTT---TTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTC</genome_strand>
        <mrna_strand>CAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCTAAGGAGGCAGGGGCATTGCTCTCTTATGACCCTAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAAGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCCCTTTGCTCAAGGGAGGAGCATAGAAACATCATGTTATCTTTTTTCTTTTTTCCGTCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTTAACTTTGAAGCTAGTAGGAAACAGGTTCAGTTTTGGATTTTAATGTTTTGTTGTGAAGAATGACCGGCAAGGCACTTAATAAACTAAGCTTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696519" ref_strand="+" ref_description="SGN-E696519 [LH_Ea09F13](-)">
      <seq>agaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagctaaggaggcaggggcattgctctcttatgaccctaaccttcgtttgccgttgtggccttcagcagaagaagccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggttgaaggaagtacttaggttttcatgtgcatgtggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatttgaagccctcactttgctcaagggaggagcatagaaacatcatgttatcttttttcttttttccgtcttcatatatttccccccctttatgagttttttttaactttgaagctagtaggaagccttttcagttttggattttaatgttttgttgtgatgaatgtccatcaaggcacttaataaactaagctttcttcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54826" stop="52109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54526" g_stop="54464" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53204" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="396" r_length="333" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="513" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52699" g_stop="52412" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="808" r_length="295" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="809" polyA_stop="829"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E696519" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54526" e_stop="54464"/>
          <exon e_start="53536" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAG----TTTT---TTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTC</genome_strand>
        <mrna_strand>AGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCTAAGGAGGCAGGGGCATTGCTCTCTTATGACCCTAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAAGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATTTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCATGTTATCTTTTTTCTTTTTTCCGTCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTTAACTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGGCACTTAATAAACTAAGCTTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696432" ref_strand="+" ref_description="SGN-E696432 [LH_Ea09B22](-)">
      <seq>aatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagctaaggaggcaggggcattgctctcttatgaccctaaccttcgtttgccgttgtggccttcagcagaagaagccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggttgaaggaagtacttaggttttcatgtgcatgtggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatctgaagccctcactttgctcaagggaggagcatagaaacatcatgttatcttttttcttttttccgtcttcatatatttccccccctttatgagttttttttaactttgaagctagtaggaagcatggtcagttttggattttaatgttttgttgtgatgaatgaacagcaaggcacttaataaactaagctttcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54823" stop="52109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54523" g_stop="54464" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53204" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="393" r_length="333" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="510" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52699" g_stop="52412" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="805" r_length="295" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="806" polyA_stop="817"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E696432" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54523" e_stop="54464"/>
          <exon e_start="53536" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAG----TTTT---TTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTC</genome_strand>
        <mrna_strand>AATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCTAAGGAGGCAGGGGCATTGCTCTCTTATGACCCTAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAAGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCATGTTATCTTTTTTCTTTTTTCCGTCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTTAACTTTGAAGCTAGTAGGAAGCATGGTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGAACAGCAAGGCACTTAATAAACTAAGCTTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577976" ref_strand="-" ref_description="SGN-E577976 [LE08CC09]">
      <seq>caattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggttgaaggaagtacttaggttttcatgtgcatgtggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatctgaagccctcactttgctcaagggaggagcatagaaacatcgtgttatcttttttcttttttccatcttcatatatttccccccctttatgagtttttttgaagctagtaggaagccttttcagttttggattttaatgttttgttgtgatgaatgtccatcaagacacttaataaactaagctttcttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53814" stop="52109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53514" g_stop="53204" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="428" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52699" g_stop="52412" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="716" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="717" polyA_stop="735"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E577976" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577976" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53514" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTC</genome_strand>
        <mrna_strand>CAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244314" ref_strand="+" ref_description="SGN-E244314 [cLEF-37-K23](-)">
      <seq>gtgaaaagggttgcaattactactccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacacccctggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattttcgaggattaagcaaggttgaaggaagtccttaggttttcatgggcatgtggagccatccctccaaccaagaaaggagcaatcccagctttgccgattgcatttgaagccctccctttgctcaagggaggagcatagaaacatcggggaatcttttttcttttttccatcttcaaaaatttccccccctttatgagtttttttgaagctagtaggaagccttttcagtttgggattttaatgttttggtgtgaagaatgtccaccaagtcccttaataaagtaagcttttttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53532" stop="52109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53232" g_stop="53204" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="146" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52699" g_stop="52412" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="434" r_length="288" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="435" polyA_stop="474"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E244314" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53232" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTC</genome_strand>
        <mrna_strand>GTGAAAAGGGTTGCAATTACTACTCCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCCCTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTTTCGAG....................................................................................GATTAAGCAAGGTTGAAGGAAGTCCTTAGGTTTTCATGGGCATGTGGAGCCATCCCTCCAACCAAGAAAGGAGCAATCCCAGCTTTGCCGATTGCATTTGAAGCCCTCCCTTTGCTCAAGGGAGGAGCATAGAAACATCGGGGAATCTTTTTTCTTTTTTCCATCTTCAAAAATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTGGGATTTTAATGTTTTGGTGTGAAGAATGTCCACCAAGTCCCTTAATAAAGTAAGCTTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374675" ref_strand="+" ref_description="SGN-E374675 [TUS-15-P11](-)">
      <seq>agaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggttgaaggaagtacttaggttttcatgtgcatgtggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatttgaagccctcactttggtcaagggaggagcatagaaacatcgggttatcttttttcttttttccatcttcatatatttccccccctttatgagtttttttgaagctagtaggaagccttttcagttttggattttaatgttttgttgtgatgaatgtccatcaagacacttaataaattaagcttttttcaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53202" stop="52109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52902" g_stop="52784" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52699" g_stop="52412" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="407" r_length="288" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="408" polyA_stop="433"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E374675" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52902" e_stop="52784"/>
          <exon e_start="52699" e_stop="52412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTC</genome_strand>
        <mrna_strand>AGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATTTGAAGCCCTCACTTTGGTCAAGGGAGGAGCATAGAAACATCGGGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAATTAAGCTTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215948" ref_strand="+" ref_description="SGN-E215948 [cLEL-13-C11](-)">
      <seq>aattactacaccaaaaattccatgaaccgttgaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggttgaaggaagtacttaggttttcatgtgcatgtggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatctgaagccctcactttgctcaagggaggagcatagaaacatcgtgttatcttttttcttttttccatcttcatatatttccccccctttatgagtttttttgaagctagtaggaagccttttcagttttggattttaatgttttgttgtgatgaatgtccatcaagacacttaataaactaagctttcttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53202" stop="52109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="129" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52699" g_stop="52412" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="417" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="418" polyA_stop="436"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E215948" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTC</genome_strand>
        <mrna_strand>AAATTCCAT-GAACCGTT-GAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216331" ref_strand="+" ref_description="SGN-E216331 [cLEL-13-C11](-)">
      <seq>catgtgcatgtggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatctgaagccctcactttgctcaagggaggagcatagaaacatcgtgttatcttttttcttttttccatcttcatatatttccccccctttatgagtttttttgaagctagtaggaagccttttcagttttggattttaatgttttgttgtgatgaatgtccatcaagacccttaataaactaagctttcttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52965" stop="52109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52665" g_stop="52412" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="255" polyA_stop="273"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E216331" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52665" e_stop="52412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTC</genome_strand>
        <mrna_strand>CATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACCCTTAATAAACTAAGCTTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302173" ref_strand="+" ref_description="SGN-E302173 [cLEW-19-L10]">
      <seq>aggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggttgaaggaagtacttaggttttcatgtgcatgtggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatctgaagccctcactttgctcaagggaggagcatagaaacatcgtgttatcttttttcttttttccatcttcatatatttccccccctttatgagtttttttgaagctagtaggaagccttttcagttttggattttaatgttttgttgtgatgaatgtccatcaagacacttaataaactaagctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53751" stop="52115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53451" g_stop="53204" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="365" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52699" g_stop="52415" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="650" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E302173" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53451" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTC</genome_strand>
        <mrna_strand>AGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550619" ref_strand="+" ref_description="SGN-E550619 [TUS-11-I18]">
      <seq>ctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggttgaaggaagtacttaggttttcatgtgcatgtggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatctgaagccctcactttgctcaagggaggagcatagaaacatcgtgttatcttttttcttttttccatcttcatatatttccccccctttatgagtttttttgaagctagtaggaagccttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53737" stop="52180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53437" g_stop="53204" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="351" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52699" g_stop="52480" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="571" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E550619" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53437" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTC</genome_strand>
        <mrna_strand>CTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688264" ref_strand="+" ref_description="SGN-E688264 [t3_tus_11_i18]">
      <seq>ctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggttgaaggaagtacttaggttttcatgtgcatgtggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatctgaagccctcactttgctcaagggaggagcatagaaacatcgtgttatcttttttcttttttccatcttcatatatttccccccctttatgagtttttttgaagctagtaggaagccttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53737" stop="52180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53437" g_stop="53204" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="351" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52699" g_stop="52480" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="571" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E688264" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53437" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTC</genome_strand>
        <mrna_strand>CTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272289" ref_strand="+" ref_description="SGN-E272289 [cLEM-19-L13]">
      <seq>tctcttatgacccaaaccttcgtttgccgttgtggccttgagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggttgaaggaagtacttaggttttcatgtgcatgtggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatctgaagccctcactttgctcaagggaggagcatagaaacatcgngttatcttttttcttttttccatcttcatatatttccccccctttatgagtttttttgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53736" stop="52197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53436" g_stop="53204" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="350" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52699" g_stop="52497" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="553" r_length="203" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E272289" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53436" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGC</genome_strand>
        <mrna_strand>TCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTGAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGNGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304385" ref_strand="+" ref_description="SGN-E304385 [cLEX-12-N4]">
      <seq>gcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggttgaaggaagtacttaggttttcatgtgcatgtggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatctgaagccctcactttgctcaagggaggagcatagaaacatcgnggtatcttttttcttttttccatcttcatatatttccccccctttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53758" stop="52210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53458" g_stop="53204" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="372" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52699" g_stop="52510" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="562" r_length="190" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E304385" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53458" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGA</genome_strand>
        <mrna_strand>GCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGNGGTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715814" ref_strand="+" ref_description="SGN-E715814 [FB15BD05]">
      <seq>cggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggttgaaggaagtacttaggttttcatgtgcatgtggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatctgaaaccctcactttgcttcagggaggagcataaaaacatcgggttatcttttttctttttccatcttcatatatttccccccctttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54959" stop="52212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54659" g_stop="54464" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53204" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="529" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="646" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52699" g_stop="52512" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="833" r_length="187" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E715814" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54659" e_stop="54464"/>
          <exon e_start="53536" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTAT</genome_strand>
        <mrna_strand>CGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAACCCTCACTTTGCTTCAGGGAGGAGCATAAAAACATCGGGTTATCTTTTTTC-TTTTTCCATCTTCATATATTTCCCCCCCTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211459" ref_strand="+" ref_description="SGN-E211459 [cLEC-67-D3]">
      <seq>cgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggttgaaggaagtacttangttttcatgtgcatgtggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatctgaagccctcactttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54812" stop="52284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54512" g_stop="54464" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53204" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="382" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="499" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52699" g_stop="52584" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="615" r_length="116" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E211459" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54512" e_stop="54464"/>
          <exon e_start="53536" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCT</genome_strand>
        <mrna_strand>CGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTANGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270097" ref_strand="+" ref_description="SGN-E270097 [cLEM-7-F17]">
      <seq>aagtagcaaaggaggcaggggcattgctctcttatgacccagaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggttgaaggaagtacttaggttttcatgtgcatgtggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatctgaagccctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53763" stop="52290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53463" g_stop="53204" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="377" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52699" g_stop="52590" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="487" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E270097" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53463" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCAC</genome_strand>
        <mrna_strand>AAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAGACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270881" ref_strand="+" ref_description="SGN-E270881 [cLEM-6-F5]">
      <seq>gagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaagtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaagtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggttgaaggaagtacttaagttttcatgtgcatgtggagccatcacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54849" stop="52342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54549" g_stop="54464" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53204" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="419" r_length="333" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="536" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52699" g_stop="52642" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="594" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E270881" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54549" e_stop="54464"/>
          <exon e_start="53536" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTA</genome_strand>
        <mrna_strand>GAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAAGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAAGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTAAGTTTTCATGTGCATGTGGAGCCATCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E556521" ref_strand="+" ref_description="SGN-E556521 [cTSD-3-L8]">
      <seq>gtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggtttgaaggaagtacttaggttttcatgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55132" stop="52359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54832" g_stop="54464" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53204" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="702" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="819" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52699" g_stop="52659" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="820" r_stop="861" r_length="42" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E556521" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54832" e_stop="54464"/>
          <exon e_start="53536" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGG-TTGAAGGAAGTACTTAGGTTTTCATGTGC</genome_strand>
        <mrna_strand>GTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTTGAAGGAAGTACTTAGGTTTTCATGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710534" ref_strand="+" ref_description="SGN-E710534 [FA55CH10]">
      <seq>cttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggggcccttctaaccaagattgttgatgatcaaacccttctcgaggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55114" stop="52478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54815" g_stop="54464" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53204" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="685" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="802" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52699" g_stop="52695" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="803" r_stop="807" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E710534" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54815" e_stop="54464"/>
          <exon e_start="53536" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGA</genome_strand>
        <mrna_strand>CTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGGGCCCTTCTAACCAAGATTGTTGATGATCAAACCCTTCTCGAG....................................................................................GATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713772" ref_strand="+" ref_description="SGN-E713772 [FB09CD12]">
      <seq>cgctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54880" stop="52490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54581" g_stop="54464" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53204" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="451" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52900" g_stop="52790" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="562" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E713772" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54581" e_stop="54464"/>
          <exon e_start="53536" e_stop="53204"/>
          <exon e_start="52900" e_stop="52790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATT</genome_strand>
        <mrna_strand>CGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705639" ref_strand="+" ref_description="SGN-E705639 [FA27CH08]">
      <seq>taaaaatctatagatacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccagattgttgatgatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55223" stop="52496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54923" g_stop="54464" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53204" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="793" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52900" g_stop="52796" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="794" r_stop="897" r_length="104" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E705639" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>898</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54923" e_stop="54464"/>
          <exon e_start="53536" e_stop="53204"/>
          <exon e_start="52900" e_stop="52796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAA</genome_strand>
        <mrna_strand>TAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACC-AGATTGTTGATGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691501" ref_strand="+" ref_description="SGN-E691501 [LH_Ea06E11]">
      <seq>ccgtttctggtatactatataaaaatctatagatacatatattcctctctattcatcgtcgccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtgtccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgatgggatcaattttgacaagggcgccaggacggctttggcgttcgtgactctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagctaaggaggcaggggcattgctctcttatgaccctaaccttcgtttgccgttgtggccttcagcagaagaagccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacacccagaaattccatggaaaccgttgggagattccatgtgaagactgttgacaccactggagctggggattcttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55218" stop="52530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54904" g_stop="54464" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="468" r_length="442" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53204" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="801" r_length="333" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52900" g_stop="52830" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="802" r_stop="873" r_length="72" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E691501" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54904" e_stop="54464"/>
          <exon e_start="53536" e_stop="53204"/>
          <exon e_start="52900" e_stop="52830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATAGATACATATATT-TTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGG-AACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGT</genome_strand>
        <mrna_strand>CTATAGATACATATATTCCTCTCTATTCATCGTCGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTGTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGATGGGATCAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACTCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCTAAGGAGGCAGGGGCATTGCTCTCTTATGACCCTAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAAGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCCAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAAACCGTTGGGAGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGGGATTCTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233162" ref_strand="+" ref_description="SGN-E233162 [cLED-6-M2]">
      <seq>gagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgctggaggattccatgtgaagactgttgacaccactggagctggtgattctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54849" stop="52532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54549" g_stop="54464" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53204" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="419" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52900" g_stop="52832" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="488" r_length="69" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E233162" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54549" e_stop="54464"/>
          <exon e_start="53536" e_stop="53204"/>
          <exon e_start="52900" e_stop="52832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTT</genome_strand>
        <mrna_strand>GAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGCTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241097" ref_strand="+" ref_description="SGN-E241097 [cLED-26-I22]">
      <seq>gagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54849" stop="52550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54549" g_stop="54464" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53204" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="419" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52900" g_stop="52850" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="470" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E241097" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54549" e_stop="54464"/>
          <exon e_start="53536" e_stop="53204"/>
          <exon e_start="52900" e_stop="52850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACT</genome_strand>
        <mrna_strand>GAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710983" ref_strand="+" ref_description="SGN-E710983 [FA57CD06]">
      <seq>gtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacacccaagaaattccatggaaccgttggaggattccatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55140" stop="52567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54840" g_stop="54464" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53204" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="711" r_length="334" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52900" g_stop="52867" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="745" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E710983" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54840" e_stop="54464"/>
          <exon e_start="53536" e_stop="53204"/>
          <exon e_start="52900" e_stop="52867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACA-CCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGA</genome_strand>
        <mrna_strand>GTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239651" ref_strand="+" ref_description="SGN-E239651 [cLED-33-C11]">
      <seq>acaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgaggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaatttcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54920" stop="52893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54620" g_stop="54464" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53204" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="490" r_length="333" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52900" g_stop="52893" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="498" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E239651" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54620" e_stop="54464"/>
          <exon e_start="53536" e_stop="53204"/>
          <exon e_start="52900" e_stop="52893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCA</genome_strand>
        <mrna_strand>ACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGAGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202348" ref_strand="+" ref_description="SGN-E202348 [cLEC-6-L19]">
      <seq>cgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54914" stop="52893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54614" g_stop="54464" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53204" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="484" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52900" g_stop="52893" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="492" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E202348" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54614" e_stop="54464"/>
          <exon e_start="53536" e_stop="53204"/>
          <exon e_start="52900" e_stop="52893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCA</genome_strand>
        <mrna_strand>CGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722928" ref_strand="+" ref_description="SGN-E722928 [FC18DB05]">
      <seq>gaattggcggccaatcggccgaattgctcttcttctctctgttatactatataaaaatctatagatacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55250" stop="52900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54948" g_stop="54464" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="511" r_length="485" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53204" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="844" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E722928" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54948" e_stop="54464"/>
          <exon e_start="53536" e_stop="53204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTTCTCTCTGTTATACTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG</genome_strand>
        <mrna_strand>CTCTTCTTCTCTCTGTTATACTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692679" ref_strand="+" ref_description="SGN-E692679 [LH_Ea09F13]">
      <seq>ttattttctctattcatcgtcgccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtgtccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgatgggatcaattttgacaagggcgccaggacggctttggcgttcgtgactctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagctaaggaggcaggggcattgctctcttatgaccctaaccttcgtttgccgttgtggccttcagcagaagaagccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55191" stop="52900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54892" g_stop="54464" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53204" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="762" r_length="333" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E692679" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54892" e_stop="54464"/>
          <exon e_start="53536" e_stop="53204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG</genome_strand>
        <mrna_strand>TTATTTTCTCTATTCATCGTCGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTGTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGATGGGATCAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACTCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCTAAGGAGGCAGGGGCATTGCTCTCTTATGACCCTAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAAGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247573" ref_strand="+" ref_description="SGN-E247573 [cLEF-42-F7]">
      <seq>atagtatagagtgtatcgaaatcgagtggagccaaaaggggtaggtggggaagtatagttaaattcatgtcaagtgtcattatcatggagtcagtcattaattgtagctcacaaactaattaatttttgtatggattatagtttaatttgtgaattttgtgtatataggctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54004" stop="52908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53704" g_stop="53208" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E247573" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53704" e_stop="53208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACAC</genome_strand>
        <mrna_strand>ATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAAGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724045" ref_strand="+" ref_description="SGN-E724045 [FC22DF01]">
      <seq>aatcggccgaattgctcctcttcttctctctgttatactatataaaaatctatagatacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55253" stop="52911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54965" g_stop="54464" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53211" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="828" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E724045" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54965" e_stop="54464"/>
          <exon e_start="53536" e_stop="53211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCACTTATCCTCCTCTTCTTCTCTCTGTTATACTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTA</genome_strand>
        <mrna_strand>AATCGGCCGAATTGCTCCTCTTCTTCTCTCTGTTATACTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721415" ref_strand="+" ref_description="SGN-E721415 [FC13DC10]">
      <seq>gctctctgttatactatataaaaatctatagatacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatccgtttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55240" stop="52911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54941" g_stop="54464" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53211" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="804" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E721415" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54941" e_stop="54464"/>
          <exon e_start="53536" e_stop="53211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTGTTATACTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTA</genome_strand>
        <mrna_strand>GCTCTCTGTTATACTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCCGTTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699965" ref_strand="+" ref_description="SGN-E699965 [FA11CH08]">
      <seq>atattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55192" stop="52928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54892" g_stop="54464" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53228" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="738" r_length="309" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E699965" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54892" e_stop="54464"/>
          <exon e_start="53536" e_stop="53228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAA</genome_strand>
        <mrna_strand>ATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276775" ref_strand="+" ref_description="SGN-E276775 [cLEN-14-E13]">
      <seq>cgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54914" stop="52935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54614" g_stop="54464" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53235" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="453" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E276775" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54614" e_stop="54464"/>
          <exon e_start="53536" e_stop="53235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCT</genome_strand>
        <mrna_strand>CGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691922" ref_strand="+" ref_description="SGN-E691922 [LH_Ea07F24]">
      <seq>ccgttaaagtgccgaattcggcacgaggtaaaaatctatagacccttatattttctctattcatcgtcgccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtgtccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgatgggatcaattttgacaagggcgccaggacggctttggcgttcgtgactctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagctaaggaggcaggggcattgctctcttatgaccctaaccttcgattgccgttgtggccttcagcagaagaagccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcaccgatgtggagctcgaattcctctctggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55213" stop="52936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54904" g_stop="54464" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="476" r_length="441" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53236" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="777" r_length="301" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E691922" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54904" e_stop="54464"/>
          <exon e_start="53536" e_stop="53236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTC</genome_strand>
        <mrna_strand>CTATAGACCCTTATATTTTCTCTATTCATCGTCGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTGTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGATGGGATCAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACTCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCTAAGGAGGCAGGGGCATTGCTCTCTTATGACCCTAACCTTCGATTGCCGTTGTGGCCTTCAGCAGAAGAAGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCACCGATGTGGAGCTCGAATTCCTCTCTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214051" ref_strand="+" ref_description="SGN-E214051 [cLEC-80-G19]">
      <seq>tacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaagtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaactgaagctactcttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55209" stop="52941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54909" g_stop="54464" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53241" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="741" r_length="295" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E214051" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54909" e_stop="54464"/>
          <exon e_start="53536" e_stop="53241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGT</genome_strand>
        <mrna_strand>TACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAAGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAAC-TGAAGCTACTCTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692592" ref_strand="+" ref_description="SGN-E692592 [LH_Ea09B22]">
      <seq>ttactatataaaaatctatagatacatatattttctctcttcttcgtcgccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtgtccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgatgggatcaattttgacaagggcgccaggacggctttggcgttcgtgactctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagctaaggaggcaggggcattgctctcttatgaccctaaccttcgtttgccgttgtggccttcagcagaagaagccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55216" stop="52954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54919" g_stop="54464" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53254" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="739" r_length="283" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E692592" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54919" e_stop="54464"/>
          <exon e_start="53536" e_stop="53254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGA</genome_strand>
        <mrna_strand>TTACTATATAAAAATCTATAGATACATATATTTTCTCTCTTCTTCGTCGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTGTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGATGGGATCAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACTCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCTAAGGAGGCAGGGGCATTGCTCTCTTATGACCCTAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAAGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705864" ref_strand="+" ref_description="SGN-E705864 [FA28BD12]">
      <seq>agggttatactatataaaaatctatagatacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55234" stop="52956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54937" g_stop="54464" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53256" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="755" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E705864" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54937" e_stop="54464"/>
          <exon e_start="53536" e_stop="53256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTATACTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTT</genome_strand>
        <mrna_strand>AGGGTTATACTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244313" ref_strand="+" ref_description="SGN-E244313 [cLEF-37-K23]">
      <seq>tcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54948" stop="52975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54648" g_stop="54464" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53275" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="447" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E244313" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54648" e_stop="54464"/>
          <exon e_start="53536" e_stop="53275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGT</genome_strand>
        <mrna_strand>TCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240933" ref_strand="+" ref_description="SGN-E240933 [cLED-24-E14]">
      <seq>gacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54970" stop="52984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54670" g_stop="54464" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53284" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="460" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E240933" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54670" e_stop="54464"/>
          <exon e_start="53536" e_stop="53284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAAT</genome_strand>
        <mrna_strand>GACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242501" ref_strand="+" ref_description="SGN-E242501 [cLED-30-A6]">
      <seq>acaagccgaaagaattaattttgactagggcgccaagacggttttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcgaatcaagagcatatgggactatgctgatgtgatcaaggtcagcgatgtggagcttcgattcctcactggaagcaacaagattgatgatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54920" stop="52984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54620" g_stop="54464" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53284" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="410" r_length="253" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E242501" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54620" e_stop="54464"/>
          <exon e_start="53536" e_stop="53284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAAT</genome_strand>
        <mrna_strand>ACAAGCCGAAAGAATTAATTTTGACTAGGGCGCCAAGACGGTTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCGAATCAAGAGCATATGGGACTATGCTGATGTGATCAAGGTCAGCGATGTGGAGCTTCGATTCCTCACTGGAAGCAACAAGATTGATGATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301962" ref_strand="+" ref_description="SGN-E301962 [cLEX-3-B4]">
      <seq>tttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatggggagctcgaattcctcactggaagcaacaagattgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55060" stop="52987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54760" g_stop="54464" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53287" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="547" r_length="250" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E301962" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54760" e_stop="54464"/>
          <exon e_start="53536" e_stop="53287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATG</genome_strand>
        <mrna_strand>TTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGGGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275477" ref_strand="+" ref_description="SGN-E275477 [cLEN-10-A19]">
      <seq>cggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaataggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54882" stop="53003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54582" g_stop="54464" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53303" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="353" r_length="234" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E275477" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54582" e_stop="54464"/>
          <exon e_start="53536" e_stop="53303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGC</genome_strand>
        <mrna_strand>CGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAATAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230998" ref_strand="+" ref_description="SGN-E230998 [cLED-5-C16]">
      <seq>acaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54920" stop="53036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54620" g_stop="54464" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53336" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="358" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E230998" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54620" e_stop="54464"/>
          <exon e_start="53536" e_stop="53336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTC</genome_strand>
        <mrna_strand>ACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721040" ref_strand="+" ref_description="SGN-E721040 [FC12CD07]">
      <seq>gctcttcttctctctgttatactatataaaaatctatagatacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcaaacgtcgctatcgcggtgacaaggctcggagggaagtcggcgttcgtcgggaaactcgtcgacaatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccaacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcaccacatttgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcaaaagaggccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55248" stop="53082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54949" g_stop="54464" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53382" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="641" r_length="155" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E721040" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54949" e_stop="54464"/>
          <exon e_start="53536" e_stop="53382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTCTTCTCTCTGTTATACTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAA</genome_strand>
        <mrna_strand>GCTCTTCTTCTCTCTGTTATACTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCAAACGTCGCTATCGCGGTGACAAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGTCGACAATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCAACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCACCACATTTGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAAAAGAGGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263619" ref_strand="+" ref_description="SGN-E263619 [cLEG-60-H24]">
      <seq>aacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaagggcattgctctcttatgacccaaaccttcgtttgccgttgaggcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55159" stop="53098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54859" g_stop="54464" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53398" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="535" r_length="139" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E263619" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54859" e_stop="54464"/>
          <exon e_start="53536" e_stop="53398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTT</genome_strand>
        <mrna_strand>AACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAAGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGAGGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376472" ref_strand="+" ref_description="SGN-E376472 [TUS-17-J15]">
      <seq>tacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgaccccaaaccttcgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55209" stop="53111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54909" g_stop="54464" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53411" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="573" r_length="127" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E376472" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54909" e_stop="54464"/>
          <exon e_start="53536" e_stop="53411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGA-CCCAAACCTTCGTTTG</genome_strand>
        <mrna_strand>TACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCCAAACCTTCGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210323" ref_strand="+" ref_description="SGN-E210323 [cLEC-35-M16]">
      <seq>tacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55209" stop="53112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54909" g_stop="54464" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53412" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="571" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E210323" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54909" e_stop="54464"/>
          <exon e_start="53536" e_stop="53412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTT</genome_strand>
        <mrna_strand>TACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304640" ref_strand="+" ref_description="SGN-E304640 [cLEX-11-C21]">
      <seq>aaaatctatagatacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55221" stop="53120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54921" g_stop="54464" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53420" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="575" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E304640" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54921" e_stop="54464"/>
          <exon e_start="53536" e_stop="53420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAAC</genome_strand>
        <mrna_strand>AAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310778" ref_strand="+" ref_description="SGN-E310778 [cLEZ-15-P1]">
      <seq>tacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacagagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55209" stop="53126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54909" g_stop="54464" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53426" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="557" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E310778" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54909" e_stop="54464"/>
          <exon e_start="53536" e_stop="53426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGAC</genome_strand>
        <mrna_strand>TACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACAGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307736" ref_strand="+" ref_description="SGN-E307736 [cLEY-16-M18]">
      <seq>gcttcttctggtttgatcgtcagtttcggggagatgttgagcgatttcgttccgacagtctgcggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgctaagcaacacatatgaaggcaatggaagtagccaaggaagcatgggcattgctctcttatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55149" stop="53126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54850" g_stop="54464" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53426" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="498" r_length="111" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E307736" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54850" e_stop="54464"/>
          <exon e_start="53536" e_stop="53426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGAC</genome_strand>
        <mrna_strand>GCTTCTTCTGGTTTGATCGTCAGTTTCGGGGAGATGTTGAGCGATTTCGTTCCGACAGTCTGCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGCTAAGCAACACATATGAAGGCAATGGAAGTAGCCAAGGAAGCATGGGCATTGCTCTCTTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697196" ref_strand="+" ref_description="SGN-E697196 [FA01AD09]">
      <seq>catatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcacttagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagttgcatacgaggcaggggcattgctctcttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55195" stop="53127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54895" g_stop="54464" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53427" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="542" r_length="110" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E697196" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54895" e_stop="54464"/>
          <exon e_start="53536" e_stop="53427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGA</genome_strand>
        <mrna_strand>CATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCACTTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTTGCATACGAGGCAGGGGCATTGCTCTCTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248555" ref_strand="+" ref_description="SGN-E248555 [cLEF-59-J20]">
      <seq>ctctctgttatactatataaaaatctatagatacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55240" stop="53133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54940" g_stop="54464" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53433" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="581" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E248555" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54940" e_stop="54464"/>
          <exon e_start="53536" e_stop="53433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTGTTATACTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTC</genome_strand>
        <mrna_strand>CTCTCTGTTATACTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239880" ref_strand="+" ref_description="SGN-E239880 [cLED-29-L2]">
      <seq>acaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctggtaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54920" stop="53140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54620" g_stop="54464" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53440" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="254" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E239880" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54620" e_stop="54464"/>
          <exon e_start="53536" e_stop="53440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCAT</genome_strand>
        <mrna_strand>ACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206985" ref_strand="+" ref_description="SGN-E206985 [cLEC-33-M20]">
      <seq>aaaaatctatagatacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55222" stop="53157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54922" g_stop="54464" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53457" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="539" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E206985" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54922" e_stop="54464"/>
          <exon e_start="53536" e_stop="53457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGC</genome_strand>
        <mrna_strand>AAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269589" ref_strand="+" ref_description="SGN-E269589 [cLEM-2-D1]">
      <seq>atacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55198" stop="53157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54898" g_stop="54464" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53457" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="515" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E269589" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54898" e_stop="54464"/>
          <exon e_start="53536" e_stop="53457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGC</genome_strand>
        <mrna_strand>ATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374676" ref_strand="+" ref_description="SGN-E374676 [TUS-15-P11]">
      <seq>ttcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgttcgtggagccatgtatagcagctcatatgaaggcaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55180" stop="53163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54880" g_stop="54464" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53463" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="491" r_length="74" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E374676" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54880" e_stop="54464"/>
          <exon e_start="53536" e_stop="53463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGA</genome_strand>
        <mrna_strand>TTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGTTCGTGGAGCCATGTATAGCAGCTCATATGAAGGCAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269533" ref_strand="+" ref_description="SGN-E269533 [cLEM-2-G15]">
      <seq>aaaaatctatagatacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55222" stop="53175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54922" g_stop="54464" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53475" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="521" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E269533" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54922" e_stop="54464"/>
          <exon e_start="53536" e_stop="53475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATAT</genome_strand>
        <mrna_strand>AAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294049" ref_strand="+" ref_description="SGN-E294049 [cLET-13-E23]">
      <seq>ataaaaatctatagatacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55224" stop="53176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54924" g_stop="54464" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53476" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="522" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E294049" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54924" e_stop="54464"/>
          <exon e_start="53536" e_stop="53476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATA</genome_strand>
        <mrna_strand>ATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268347" ref_strand="+" ref_description="SGN-E268347 [cLEI-13-K7]">
      <seq>atctatagatacacctatagatacatatattttgtctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55218" stop="53178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54918" g_stop="54464" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53478" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="514" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E268347" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54918" e_stop="54464"/>
          <exon e_start="53536" e_stop="53478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACA</genome_strand>
        <mrna_strand>ATCTATAGATACACCTATAGATACATATATTTTGTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266284" ref_strand="+" ref_description="SGN-E266284 [cLEI-3-N7]">
      <seq>aatctatagatacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55219" stop="53181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54919" g_stop="54464" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53481" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="512" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E266284" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54919" e_stop="54464"/>
          <exon e_start="53536" e_stop="53481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGC</genome_strand>
        <mrna_strand>AATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254435" ref_strand="+" ref_description="SGN-E254435 [cLEG-27-L19]">
      <seq>ttttctctattcatcgtagccatggcagttaacggtgcttgttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55189" stop="53199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54889" g_stop="54464" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53499" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="464" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E254435" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54889" e_stop="54464"/>
          <exon e_start="53536" e_stop="53499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGT</genome_strand>
        <mrna_strand>TTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTGTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246623" ref_strand="+" ref_description="SGN-E246623 [cLEF-45-N2]">
      <seq>ttctatataaagctccttataattttcacttatcctcctcttcttctctctgttatactatataaaaatctatagatacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55285" stop="53201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54985" g_stop="54464" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53501" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="558" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E246623" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54985" e_stop="54464"/>
          <exon e_start="53536" e_stop="53501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATATAAAGCTCCTTATAATTTTCACTTATCCTCCTCTTCTTCTCTCTGTTATACTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATC</genome_strand>
        <mrna_strand>TTCTATATAAAGCTCCTTATAATTTTCACTTATCCTCCTCTTCTTCTCTCTGTTATACTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272486" ref_strand="+" ref_description="SGN-E272486 [cLEM-19-J14]">
      <seq>atagatacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55214" stop="53201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54914" g_stop="54464" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53501" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="487" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E272486" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54914" e_stop="54464"/>
          <exon e_start="53536" e_stop="53501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATC</genome_strand>
        <mrna_strand>ATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310890" ref_strand="+" ref_description="SGN-E310890 [cLEZ-17-I15]">
      <seq>ctatataaaaatctatagatacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55228" stop="54164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54928" g_stop="54464" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E310890" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54928" e_stop="54464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT</genome_strand>
        <mrna_strand>CTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697420" ref_strand="+" ref_description="SGN-E697420 [FA02DD01]">
      <seq>tatataaaaatctatagatacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55227" stop="54160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54927" g_stop="54464" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E697420" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54927" e_stop="54464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT</genome_strand>
        <mrna_strand>TATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206701" ref_strand="+" ref_description="SGN-E206701 [cLEC-31-A22]">
      <seq>aaaatctatagatacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctactcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55221" stop="54166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54921" g_stop="54466" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E206701" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54921" e_stop="54466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGAT</genome_strand>
        <mrna_strand>AAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACTCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208286" ref_strand="+" ref_description="SGN-E208286 [cLEC-37-J2]">
      <seq>tctgttatactatataaaaatctatagatacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatctcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55237" stop="54169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54937" g_stop="54469" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E208286" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54937" e_stop="54469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTATACTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTA</genome_strand>
        <mrna_strand>TCTGTTATACTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCTCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307680" ref_strand="+" ref_description="SGN-E307680 [cLEY-16-A5]">
      <seq>tcgatttcgttcccacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaaccaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55110" stop="54228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54810" g_stop="54528" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E307680" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54810" e_stop="54528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTA</genome_strand>
        <mrna_strand>TCGATTTCGTTCCCACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACCAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308297" ref_strand="+" ref_description="SGN-E308297 [cLEZ-6-E7]">
      <seq>ttatactatataaaaatctatagatacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55233" stop="54309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54933" g_stop="54608" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E308297" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54933" e_stop="54608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATACTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGA</genome_strand>
        <mrna_strand>TTATACTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249647" ref_strand="+" ref_description="SGN-E249647 [cLEF-56-D7]">
      <seq>tatactatataaaaatctatagatacacctatagatacatatatttggtctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55232" stop="54360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54932" g_stop="54660" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-E249647" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54932" e_stop="54660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTT</genome_strand>
        <mrna_strand>TATACTATATAAAAATCTATAGATACACCTATAGATACATATATTTGGTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544418" ref_strand="+" ref_description="SGN-E544418 [TUS-66-L21]">
      <seq>atattttgtacttctgagactaatgcccaaacatccaaaatcaccaatctagattctaagatattctacacaaccagaacccctgatcaagctaaagtctatgctaaactcccaaatcaagccaaagtttatccctccaaaattcctaatcaagctaaggtctacacaaccaaaatccctaatctagattctaagatattctacgcgaccagaacccctgatcaagccaaggtctatccagctaatcttcccgaacaagctaaggtctatacatcaaaaatttatgcaacttcacactctcatagtcatcatcttggagaagtctctttcttcagagtctctaccctcaaacctggaaacacagtccatctagacaacttagtgaacccgttccctcatcgctcatttcttccatcacaaattgcctcaaagatctccattaactcaaaccatctccaacacttattccctcaaactttcacttcaccatacacaaaagataccacaaaaactaccatcctcaattgcaatgcacctactctaaaaggagaagttaaaacatgcgcgaaatccttggaagaaatgatagagttctcaaagagaagcttgaaacagaaccacctaatttcattgancacagaaagcatacaagggtcaggacagaaactaaaaatgagaaatttcataaaatcattccccaaggagtgtctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57368" stop="58681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57668" g_stop="58381" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E544418" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57668" e_stop="58381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTGTACTTCTGAGACTAATGCCCAAACATCCAAAATCACCAATCTAGATTCTAAGATATTCTACACAACCAGAACCCCTGATCAAGCTAAAGTCTATGCTAAACTCCCAAATCAAGCCAAAGTTTATCCCTCCAAAATTCCTAATCAAGCTAAGGTCTACACAACCAAAATCCCTAATCTAGATTCTAAGATATTCTACGCGACCAGAACCCCTGATCAAGCCAAGGTCTATCCAGCTAATCTTCCCGAACAAGCTAAGGTCTATACATCAAAAATTTATGCAACTTCACACTCTCATAGTCATCATCTTGGAGAAGTCTCTTTCTTCAGAGTCTCTACCCTCAAACCTGGAAACACAGTCCATCTAGACAACTTAGTGAACCCGTTCCCTCATCGCTCATTTCTTCCATCACAAATTGCCTCAAAGATCTCCATTAACTCAAACCATCTCCAACACTTATTCCCTCAAACTTTCACTTCACCATACACAAAAGATACCACAAAAACTACCATCCTCAATTGCAATGCACCTACTCTAAAAGGAGAAGTTAAAACATGCGCGAAATCCTTGGAAGAAATGATAGAGTTCTCAAAGAGAAGCTTGAAACAGAACCACCTAATTTCATTGACAACAGAAAGCATACAAGGGTCAGGACAGAAACTAAAAATTGAGAAATTTCATAAAATCAATTCCCAAAGGAGTGTCTCA</genome_strand>
        <mrna_strand>ATATTTTGTACTTCTGAGACTAATGCCCAAACATCCAAAATCACCAATCTAGATTCTAAGATATTCTACACAACCAGAACCCCTGATCAAGCTAAAGTCTATGCTAAACTCCCAAATCAAGCCAAAGTTTATCCCTCCAAAATTCCTAATCAAGCTAAGGTCTACACAACCAAAATCCCTAATCTAGATTCTAAGATATTCTACGCGACCAGAACCCCTGATCAAGCCAAGGTCTATCCAGCTAATCTTCCCGAACAAGCTAAGGTCTATACATCAAAAATTTATGCAACTTCACACTCTCATAGTCATCATCTTGGAGAAGTCTCTTTCTTCAGAGTCTCTACCCTCAAACCTGGAAACACAGTCCATCTAGACAACTTAGTGAACCCGTTCCCTCATCGCTCATTTCTTCCATCACAAATTGCCTCAAAGATCTCCATTAACTCAAACCATCTCCAACACTTATTCCCTCAAACTTTCACTTCACCATACACAAAAGATACCACAAAAACTACCATCCTCAATTGCAATGCACCTACTCTAAAAGGAGAAGTTAAAACATGCGCGAAATCCTTGGAAGAAATGATAGAGTTCTCAAAGAGAAGCTTGAAACAGAACCACCTAATTTCATTGANCACAGAAAGCATACAAGGGTCAGGACAGAAACTAAAAA-TGAGAAATTTCATAAAATC-ATTCCCCAAGGAGTGTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307998" ref_strand="+" ref_description="SGN-E307998 [cLEY-14-K17]">
      <seq>tattttgtacttctgagactaatgcccaaacatccaaaatcaccaatctagattctaagatattctacacaaccagaacccctgatcaagctaaagtctatgctaaactcccaaatcaagccaaagtttatccctccaaaattcctaatcaagctaaggtctacacaaccaaaatccctaatctagattctaagatattctacgcgaccagaacccctgatcaagccaaggtctatccagctaatcttcccgaacaagctaaggtctatacatcaaaaatttatgcaacttcacactctcatagtcatcatcttggagaagtctctttcttcagagtctctaccctcaaacctggaaacacagtccatctagacaacttagtgaacccgttccctcatcgctcatttcttccatcacaaattgcctcaaagatctccattaactcaaaccatctccaacacttattccctcaaactttcacttcaccatacacaaaagataccacaaaaactaccatcctcaattgcaatgcacctactctaaaaggagaagttaaaacatgcgcgaaatccttggaagaaatgatagagttctcaaagagaagcttgaaacagaaccacctaatttcattgacaacagaaagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57369" stop="58614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57669" g_stop="58314" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E307998" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57669" e_stop="58314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTGTACTTCTGAGACTAATGCCCAAACATCCAAAATCACCAATCTAGATTCTAAGATATTCTACACAACCAGAACCCCTGATCAAGCTAAAGTCTATGCTAAACTCCCAAATCAAGCCAAAGTTTATCCCTCCAAAATTCCTAATCAAGCTAAGGTCTACACAACCAAAATCCCTAATCTAGATTCTAAGATATTCTACGCGACCAGAACCCCTGATCAAGCCAAGGTCTATCCAGCTAATCTTCCCGAACAAGCTAAGGTCTATACATCAAAAATTTATGCAACTTCACACTCTCATAGTCATCATCTTGGAGAAGTCTCTTTCTTCAGAGTCTCTACCCTCAAACCTGGAAACACAGTCCATCTAGACAACTTAGTGAACCCGTTCCCTCATCGCTCATTTCTTCCATCACAAATTGCCTCAAAGATCTCCATTAACTCAAACCATCTCCAACACTTATTCCCTCAAACTTTCACTTCACCATACACAAAAGATACCACAAAAACTACCATCCTCAATTGCAATGCACCTACTCTAAAAGGAGAAGTTAAAACATGCGCGAAATCCTTGGAAGAAATGATAGAGTTCTCAAAGAGAAGCTTGAAACAGAACCACCTAATTTCATTGACAACAGAAAGCAT</genome_strand>
        <mrna_strand>TATTTTGTACTTCTGAGACTAATGCCCAAACATCCAAAATCACCAATCTAGATTCTAAGATATTCTACACAACCAGAACCCCTGATCAAGCTAAAGTCTATGCTAAACTCCCAAATCAAGCCAAAGTTTATCCCTCCAAAATTCCTAATCAAGCTAAGGTCTACACAACCAAAATCCCTAATCTAGATTCTAAGATATTCTACGCGACCAGAACCCCTGATCAAGCCAAGGTCTATCCAGCTAATCTTCCCGAACAAGCTAAGGTCTATACATCAAAAATTTATGCAACTTCACACTCTCATAGTCATCATCTTGGAGAAGTCTCTTTCTTCAGAGTCTCTACCCTCAAACCTGGAAACACAGTCCATCTAGACAACTTAGTGAACCCGTTCCCTCATCGCTCATTTCTTCCATCACAAATTGCCTCAAAGATCTCCATTAACTCAAACCATCTCCAACACTTATTCCCTCAAACTTTCACTTCACCATACACAAAAGATACCACAAAAACTACCATCCTCAATTGCAATGCACCTACTCTAAAAGGAGAAGTTAAAACATGCGCGAAATCCTTGGAAGAAATGATAGAGTTCTCAAAGAGAAGCTTGAAACAGAACCACCTAATTTCATTGACAACAGAAAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544417" ref_strand="+" ref_description="SGN-E544417 [TUS-66-L21](-)">
      <seq>aaaagataccacaaaaactaccatcctcaattgcaatgcacctactctaaaaggagaagttaaaacatgcgcgaaatccttggaagaaatgatagagttctcaaagagaagcttgaaacagaaccacctaatttcattgacaacagaaagcatacaagggtcaggacagaaactaaaaattgagaaatttcataaaatcaattcccaaaggagtgtctcatgccatgagatattccttccttttgctacatacttttgtcatttgctatcttcaactaacatttacgcggtggagctagttgatttaaacactaatgttcatgttaataaagctatggttgtttgtcatatggatacttcttcttggccagctgatcatccagttttcaaaaaattgaatttttcacctggaaatggagaggtttgtcattggatgtcacaagctgatcttgtttgggttggagatgatgcgcatgcataaaataattttttaaaaaaagtctacttatgttaattaagctttgagtttaattgtaaaaatggattgtcttttttcttgtttctatgtgtttaggaatagtaaggtattgtaattatggggaaaaaagtccaaatccttactttccctttcttgtgtgaagtgtgaattgtgatggtttttggtctttttatgtgtattttaataacttgcagttaatactcctattctaagttactggaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57862" stop="59182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58162" g_stop="58878" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="720" polyA_stop="732"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E544417" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58162" e_stop="58878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATACCACAAAAACTACCATCCTCAATTGCAATGCACCTACTCTAAAAGGAGAAGTTAAAACATGCGCGAAATCCTTGGAAGAAATGATAGAGTTCTCAAAGAGAAGCTTGAAACAGAACCACCTAATTTCATTGACAACAGAAAGCATACAAGGGTCAGGACAGAAACTAAAAATTGAGAAATTTCATAAAATCAATTCCCAAAGGAGTGTCTCATGCCATGAGATATTCCTTCCTTTTGCTACATACTTTTGTCATTTGCTATCTTCAACTAACATTTACGCGGTGGAGCTAGTTGATTTAAACACTAATGTTCATGTTAATAAAGCTATGGTTGTTTGTCATATGGATACTTCTTCTTGGCCAGCTGATCATCCAGTTTTCAAAAAATTGAATTTTTCACCTGGAAATGGAGAGGTTTGTCATTGGATGTCACAAGCTGATCTTGTTTGGGTTGGAGATGATGCGCATGCATAAAATAATTTTTTAAAAAAAGTCTACTTATGTTAATTAAGCTTTGAGTTTAATTGTAAAAATGGATTGTCTTTTTTCTTGTTTCTATGTGTTTAGGAATAGTAAGGTATTGTAATTATGGGGAAAAAAGTCCAAATCCTTACTTTCCCTTTCTTGTGTGAAGTGTGAATTGTGATGGTTTTTGGTCTTTTTATGTGTATTTTAATAACTTGCAGTTAATACTCCTATTCTAAGTTACT</genome_strand>
        <mrna_strand>AAAAGATACCACAAAAACTACCATCCTCAATTGCAATGCACCTACTCTAAAAGGAGAAGTTAAAACATGCGCGAAATCCTTGGAAGAAATGATAGAGTTCTCAAAGAGAAGCTTGAAACAGAACCACCTAATTTCATTGACAACAGAAAGCATACAAGGGTCAGGACAGAAACTAAAAATTGAGAAATTTCATAAAATCAATTCCCAAAGGAGTGTCTCATGCCATGAGATATTCCTTCCTTTTGCTACATACTTTTGTCATTTGCTATCTTCAACTAACATTTACGCGGTGGAGCTAGTTGATTTAAACACTAATGTTCATGTTAATAAAGCTATGGTTGTTTGTCATATGGATACTTCTTCTTGGCCAGCTGATCATCCAGTTTTCAAAAAATTGAATTTTTCACCTGGAAATGGAGAGGTTTGTCATTGGATGTCACAAGCTGATCTTGTTTGGGTTGGAGATGATGCGCATGCATAAAATAATTTTTTAAAAAAAGTCTACTTATGTTAATTAAGCTTTGAGTTTAATTGTAAAAATGGATTGTCTTTTTTCTTGTTTCTATGTGTTTAGGAATAGTAAGGTATTGTAATTATGGGGAAAAAAGTCCAAATCCTTACTTTCCCTTTCTTGTGTGAAGTGTGAATTGTGATGGTTTTTGGTCTTTTTATGTGTATTTTAATAACTTGCAGTTAATACTCCTATTCTAAGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724978" ref_strand="+" ref_description="SGN-E724978 [FC25CH05]">
      <seq>tcggccgaattgacagctatggggctctcagcttctaagagagttagcaattcactccaaaattcatccgaattcaactcggcatgtgattcagtctatgatgattgtctctccctatcacagcacgctttcgccggagtgaaaccctaccagcttttctccgccgtggaacgcctgcacgcttctctctctccctccgtacctctcataaaaaattgggttaaatcgcctccgacccgattacaggtcgataaggccttcaaaatcgtgtcaacgcgccgatccggcgaaaaggagagtgaaattgtgcttgggaacgaggaattcaaggagttctcagtggaggtattttcggacgctgtcgtttcgtgtgcagggaaagagcttctaaagcgggttccggttggtgctttggggatcgctggcgttggtgcggtggtgaagcctgggaaagaattaattgcggcggcgattggtgcttacgcgctcggtgttgcaacatcggtatacgtcagcttggcttaaacgtattttttttgtttttttttaaaattacaaaaatgaataaaagtttttacaagtttggttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60486" stop="61668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60789" g_stop="61368" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="590" r_length="580" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="591" polyA_stop="622"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E724978" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60789" e_stop="61368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAGCTATGGGGCTCTCAGCTTCTAAGAGAGTTAGCAATTCACTCCAAAATTCATCCGAATTCAACTCGGCATGTGATTCAGTCTATGATGATTGTCTCTCCCTATCACAGCACGCTTTCGCCGGAGTGAAACCCTACCAGCTTTTCTCCGCCGTGGAACGCCTGCACGCTTCTCTCTCTCCCTCCGTACCTCTCATAAAAAATTGGGTTAAATCGCCTCCGACCCGATTACAGGTCGATAAGGCCTTCAAAATCGTGTCAACGCGCCGATCCGGCGAAAAGGAGAGTGAAATTGTGCTTGGGAACGAGGAATTCAAGGAGTTCTCAGTGGAGGTATTTTCGGACGCTGTCGTTTCGTGTGCAGGGAAAGAGCTTCTAAAGCGGGTTCCGGTTGGTGCTTTGGGGATCGCTGGCGTTGGTGCGGTGGTGAAGCCTGGGAAAGAATTAATTGCGGCGGCGATTGGTGCTTACGCGCTCGGTGTTGCAACATCGGTATACGTCAGCTTGGCTTAAACGTATTTTTTTTGTTTTTTTTTAAAATTACAAAAATGAATAAAAGTTTTTACAAGTTTGGTTAA</genome_strand>
        <mrna_strand>TGACAGCTATGGGGCTCTCAGCTTCTAAGAGAGTTAGCAATTCACTCCAAAATTCATCCGAATTCAACTCGGCATGTGATTCAGTCTATGATGATTGTCTCTCCCTATCACAGCACGCTTTCGCCGGAGTGAAACCCTACCAGCTTTTCTCCGCCGTGGAACGCCTGCACGCTTCTCTCTCTCCCTCCGTACCTCTCATAAAAAATTGGGTTAAATCGCCTCCGACCCGATTACAGGTCGATAAGGCCTTCAAAATCGTGTCAACGCGCCGATCCGGCGAAAAGGAGAGTGAAATTGTGCTTGGGAACGAGGAATTCAAGGAGTTCTCAGTGGAGGTATTTTCGGACGCTGTCGTTTCGTGTGCAGGGAAAGAGCTTCTAAAGCGGGTTCCGGTTGGTGCTTTGGGGATCGCTGGCGTTGGTGCGGTGGTGAAGCCTGGGAAAGAATTAATTGCGGCGGCGATTGGTGCTTACGCGCTCGGTGTTGCAACATCGGTATACGTCAGCTTGGCTTAAACGTATTTTTTTTGTTTTTTTTTAAAATTACAAAAATGAATAAAAGTTTTTACAAGTTTGGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734324" ref_strand="+" ref_description="SGN-E734324 [LB12BE03]">
      <seq>ggggctctcagcttctaagagagttagcaattcactccaaaattcatccgaattcaactcggcatgtgattcagtctatgatgattgtctctccctatcacagcacgctttcgccggagtgaaaccctaccagcttttctccgccgtggaacgcctgcacgcttctctctctccctccgtacctctcataaaaaattgggttaaatcgcctccgacccgattacaggtcgataaggccttcaaaatcgtgtcaacgcgccgatccggcgaaaaggagagtgaaattgtgcttgggaacgaggaattcaaggagttctcagtggaggtattttcggacgctgtcgtttcgtgtgcagggaaagagcttctaaagcgggttccggttggtgctttggggatcgctggcgttggtgcggtggtgaagcctgggaaagaattaattgcggcggcgattggtgcttacgcgctcggtgttgcaacatcggtatacgtcagcttggcttaaacgtattttttttgtttttttttaaaattacaaaaatgaataaaagtttttacaagtttggttaagcccaaaagtacaaattagtcatgttttaaattattataacccctaataagagactgaaagcaagtagaataattgtaattagatgattaacagtctttatccacatttatataatttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60499" stop="61793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60799" g_stop="61486" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="690" polyA_stop="707"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E734324" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60799" e_stop="61486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGCTCTCAGCTTCTAAGAGAGTTAGCAATTCACTCCAAAATTCATCCGAATTCAACTCGGCATGTGATTCAGTCTATGATGATTGTCTCTCCCTATCACAGCACGCTTTCGCCGGAGTGAAACCCTACCAGCTTTTCTCCGCCGTGGAACGCCTGCACGCTTCTCTCTCTCCCTCCGTACCTCTCATAAAAAATTGGGTTAAATCGCCTCCGACCCGATTACAGGTCGATAAGGCCTTCAAAATCGTGTCAACGCGCCGATCCGGCGAAAAGGAGAGTGAAATTGTGCTTGGGAACGAGGAATTCAAGGAGTTCTCAGTGGAGGTATTTTCGGACGCTGTCGTTTCGTGTGCAGGGAAAGAGCTTCTAAAGCGGGTTCCGGTTGGTGCTTTGGGGATCGCTGGCGTTGGTGCGGTGGTGAAGCCTGGGAAAGAATTAATTGCGGCGGCGATTGGTGCTTACGCGCTCGGTGTTGCAACATCGGTATACGTCAGCTTGGCTTAAACGTATTTTTTTTGTTTTTTTTTAAAATTACAAAAATGAATAAAAGTTTTTACAAGTTTGGTTAAGCCCAAAAGTACAAATTAGTCATGTTTTAAATTATTATAACCCCTAATAAGAGACTGAAAGCAAGTAGAATAATTGTAATTAGATGATTAACAGTCTTTATCCACATTTATATAATTT</genome_strand>
        <mrna_strand>GGGGCTCTCAGCTTCTAAGAGAGTTAGCAATTCACTCCAAAATTCATCCGAATTCAACTCGGCATGTGATTCAGTCTATGATGATTGTCTCTCCCTATCACAGCACGCTTTCGCCGGAGTGAAACCCTACCAGCTTTTCTCCGCCGTGGAACGCCTGCACGCTTCTCTCTCTCCCTCCGTACCTCTCATAAAAAATTGGGTTAAATCGCCTCCGACCCGATTACAGGTCGATAAGGCCTTCAAAATCGTGTCAACGCGCCGATCCGGCGAAAAGGAGAGTGAAATTGTGCTTGGGAACGAGGAATTCAAGGAGTTCTCAGTGGAGGTATTTTCGGACGCTGTCGTTTCGTGTGCAGGGAAAGAGCTTCTAAAGCGGGTTCCGGTTGGTGCTTTGGGGATCGCTGGCGTTGGTGCGGTGGTGAAGCCTGGGAAAGAATTAATTGCGGCGGCGATTGGTGCTTACGCGCTCGGTGTTGCAACATCGGTATACGTCAGCTTGGCTTAAACGTATTTTTTTTGTTTTTTTTTAAAATTACAAAAATGAATAAAAGTTTTTACAAGTTTGGTTAAGCCCAAAAGTACAAATTAGTCATGTTTTAAATTATTATAACCCCTAATAAGAGACTGAAAGCAAGTAGAATAATTGTAATTAGATGATTAACAGTCTTTATCCACATTTATATAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374022" ref_strand="+" ref_description="SGN-E374022 [TUS-33-E17]">
      <seq>tctaagagagttagcaattcactccaaaattcatccgaattcaactcggcatgtgattcagtctatgatgattgtctctccctatcacagcacgctttcgccggagtgaaaccctaccagcttttctccgccgtggaacgcctgcacgcttctctctctccctccgtacctctcataaaaaattgggttaaatcgcctccgacccgattacaggtcgataaggccttcaaaatcgtgtcaacgcgccgatccggcgaaaaggagagtgaaattgtgcttgggaacgaggaattcaaggagttctcagtggaggtattttcggacgctgtcgtttcgtgtgcagggaaagagcttctaaagcgggttccggttggtgctttggggatcgctggcgttggtgcggtggtgaagcctgggaaagaattaattgcggcggcgattggtgcttacgcgctcggtgttgcaacatcggtatacgtcagcttggcttaaacgtatttttttttgtttttttttaaaattacaaaaatgaataaaagtttttacaagtttggttaagcccaaaagtacaaattagtcatgttttaaattattataacccctaataagagactgaaagcaagtagaataattgttattagatgattaacagtctttatccacatttatattatttgtataaattattttttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60512" stop="61821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60812" g_stop="61517" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="708" polyA_stop="730"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E374022" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60812" e_stop="61517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAGAGAGTTAGCAATTCACTCCAAAATTCATCCGAATTCAACTCGGCATGTGATTCAGTCTATGATGATTGTCTCTCCCTATCACAGCACGCTTTCGCCGGAGTGAAACCCTACCAGCTTTTCTCCGCCGTGGAACGCCTGCACGCTTCTCTCTCTCCCTCCGTACCTCTCATAAAAAATTGGGTTAAATCGCCTCCGACCCGATTACAGGTCGATAAGGCCTTCAAAATCGTGTCAACGCGCCGATCCGGCGAAAAGGAGAGTGAAATTGTGCTTGGGAACGAGGAATTCAAGGAGTTCTCAGTGGAGGTATTTTCGGACGCTGTCGTTTCGTGTGCAGGGAAAGAGCTTCTAAAGCGGGTTCCGGTTGGTGCTTTGGGGATCGCTGGCGTTGGTGCGGTGGTGAAGCCTGGGAAAGAATTAATTGCGGCGGCGATTGGTGCTTACGCGCTCGGTGTTGCAACATCGGTATACGTCAGCTTGGCTTAAACGTA-TTTTTTTTGTTTTTTTTTAAAATTACAAAAATGAATAAAAGTTTTTACAAGTTTGGTTAAGCCCAAAAGTACAAATTAGTCATGTTTTAAATTATTATAACCCCTAATAAGAGACTGAAAGCAAGTAGAATAATTGTAATTAGATGATTAACAGTCTTTATCCACATTTATATAATTTGTATAAATTATTTTTTTTTTATAAAAAAAAA</genome_strand>
        <mrna_strand>TCTAAGAGAGTTAGCAATTCACTCCAAAATTCATCCGAATTCAACTCGGCATGTGATTCAGTCTATGATGATTGTCTCTCCCTATCACAGCACGCTTTCGCCGGAGTGAAACCCTACCAGCTTTTCTCCGCCGTGGAACGCCTGCACGCTTCTCTCTCTCCCTCCGTACCTCTCATAAAAAATTGGGTTAAATCGCCTCCGACCCGATTACAGGTCGATAAGGCCTTCAAAATCGTGTCAACGCGCCGATCCGGCGAAAAGGAGAGTGAAATTGTGCTTGGGAACGAGGAATTCAAGGAGTTCTCAGTGGAGGTATTTTCGGACGCTGTCGTTTCGTGTGCAGGGAAAGAGCTTCTAAAGCGGGTTCCGGTTGGTGCTTTGGGGATCGCTGGCGTTGGTGCGGTGGTGAAGCCTGGGAAAGAATTAATTGCGGCGGCGATTGGTGCTTACGCGCTCGGTGTTGCAACATCGGTATACGTCAGCTTGGCTTAAACGTATTTTTTTTTGTTTTTTTTTAAAATTACAAAAATGAATAAAAGTTTTTACAAGTTTGGTTAAGCCCAAAAGTACAAATTAGTCATGTTTTAAATTATTATAACCCCTAATAAGAGACTGAAAGCAAGTAGAATAATTGTTATTAGATGATTAACAGTCTTTATCCACATTTATATTATTTGTATAAATTATTTTTTTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373610" ref_strand="+" ref_description="SGN-E373610 [TUS-33-G16]">
      <seq>tctaagagagtgagcaattcactccaacattcatccgaattcaactcggcatgtgattcactctatgatgattgtctctccctatcacagcacgctttcgccggagtgaaaccctaccagcttttctccgccgtggaacgcctgcacgcttgtctctctccctccgtacctctcataaaaaattgggttaaatcgcctccgacccgattacaggtcgataaggccttcaaaatcgtgtcaacgcgccgatccggcgaaaaggatagtgaaattgtgcttgggaacgaggaattcaaggagttctcagtggaggtattttcggacgctgtcgtttcgtgtgcagggaaagagcttctaaagcgggttccggttggtgctttggggatcgctggcgttggtgcggtggtgaagcctgggacagaattaattgcggcggcgattggtgcttacgcgctcggtgttgcaacatcggtatacgtcagcttggcttagacgtatttttttttgtttttttttaaacttacaagaatgaataaaagttttttacaagtttggttaaagcccaaaagtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60512" stop="61681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60812" g_stop="61381" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E373610" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60812" e_stop="61381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAGAGAGTTAGCAATTCACTCCAAAATTCATCCGAATTCAACTCGGCATGTGATTCAGTCTATGATGATTGTCTCTCCCTATCACAGCACGCTTTCGCCGGAGTGAAACCCTACCAGCTTTTCTCCGCCGTGGAACGCCTGCACGCTTCTCTCTCTCCCTCCGTACCTCTCATAAAAAATTGGGTTAAATCGCCTCCGACCCGATTACAGGTCGATAAGGCCTTCAAAATCGTGTCAACGCGCCGATCCGGCGAAAAGGAGAGTGAAATTGTGCTTGGGAACGAGGAATTCAAGGAGTTCTCAGTGGAGGTATTTTCGGACGCTGTCGTTTCGTGTGCAGGGAAAGAGCTTCTAAAGCGGGTTCCGGTTGGTGCTTTGGGGATCGCTGGCGTTGGTGCGGTGGTGAAGCCTGGGAAAGAATTAATTGCGGCGGCGATTGGTGCTTACGCGCTCGGTGTTGCAACATCGGTATACGTCAGCTTGGCTTAAACGTA-TTTTTTTTGTTTTTTTTTAAAATTACAAAAATGAATAAAAG-TTTTTACAAGTTTGGTT-AAGCCCAAAAGTACA</genome_strand>
        <mrna_strand>TCTAAGAGAGTGAGCAATTCACTCCAACATTCATCCGAATTCAACTCGGCATGTGATTCACTCTATGATGATTGTCTCTCCCTATCACAGCACGCTTTCGCCGGAGTGAAACCCTACCAGCTTTTCTCCGCCGTGGAACGCCTGCACGCTTGTCTCTCTCCCTCCGTACCTCTCATAAAAAATTGGGTTAAATCGCCTCCGACCCGATTACAGGTCGATAAGGCCTTCAAAATCGTGTCAACGCGCCGATCCGGCGAAAAGGATAGTGAAATTGTGCTTGGGAACGAGGAATTCAAGGAGTTCTCAGTGGAGGTATTTTCGGACGCTGTCGTTTCGTGTGCAGGGAAAGAGCTTCTAAAGCGGGTTCCGGTTGGTGCTTTGGGGATCGCTGGCGTTGGTGCGGTGGTGAAGCCTGGGACAGAATTAATTGCGGCGGCGATTGGTGCTTACGCGCTCGGTGTTGCAACATCGGTATACGTCAGCTTGGCTTAGACGTATTTTTTTTTGTTTTTTTTTAAACTTACAAGAATGAATAAAAGTTTTTTACAAGTTTGGTTAAAGCCCAAAAGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300467" ref_strand="+" ref_description="SGN-E300467 [cLET-45-L13]">
      <seq>tctaagagagttagcaattcactccaaaattcatccgaattcaactcggcatgtgattcagtctatgatgattgtctctccctatcacagcacgctttcgccggagtgaaaccctaccagcttttctccgccgtggaacgcctgcacgcttctctctctccctccgtacctctcataaaaaattgggttaaatcgcctccgacccgattacaggtcgataaggccttcaaaatcgtgtcaacgcgccgatccggcgaaaaggagagtgaaattgtgcttgggaacgaggaattcaaggagttctcagtggaggtattttcggacgctgtcgtttcgtgtgcacggaaagagcttctaaagcgggttccggttggtgctttggggatcgctggcgttggtgcggtggtgaagcctgagaaagaattaattgcggcggcgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60512" stop="61552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60812" g_stop="61252" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E300467" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60812" e_stop="61252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAGAGAGTTAGCAATTCACTCCAAAATTCATCCGAATTCAACTCGGCATGTGATTCAGTCTATGATGATTGTCTCTCCCTATCACAGCACGCTTTCGCCGGAGTGAAACCCTACCAGCTTTTCTCCGCCGTGGAACGCCTGCACGCTTCTCTCTCTCCCTCCGTACCTCTCATAAAAAATTGGGTTAAATCGCCTCCGACCCGATTACAGGTCGATAAGGCCTTCAAAATCGTGTCAACGCGCCGATCCGGCGAAAAGGAGAGTGAAATTGTGCTTGGGAACGAGGAATTCAAGGAGTTCTCAGTGGAGGTATTTTCGGACGCTGTCGTTTCGTGTGCAGGGAAAGAGCTTCTAAAGCGGGTTCCGGTTGGTGCTTTGGGGATCGCTGGCGTTGGTGCGGTGGTGAAGCCTGGGAAAGAATTAATTGCGGCGGCGATT</genome_strand>
        <mrna_strand>TCTAAGAGAGTTAGCAATTCACTCCAAAATTCATCCGAATTCAACTCGGCATGTGATTCAGTCTATGATGATTGTCTCTCCCTATCACAGCACGCTTTCGCCGGAGTGAAACCCTACCAGCTTTTCTCCGCCGTGGAACGCCTGCACGCTTCTCTCTCTCCCTCCGTACCTCTCATAAAAAATTGGGTTAAATCGCCTCCGACCCGATTACAGGTCGATAAGGCCTTCAAAATCGTGTCAACGCGCCGATCCGGCGAAAAGGAGAGTGAAATTGTGCTTGGGAACGAGGAATTCAAGGAGTTCTCAGTGGAGGTATTTTCGGACGCTGTCGTTTCGTGTGCACGGAAAGAGCTTCTAAAGCGGGTTCCGGTTGGTGCTTTGGGGATCGCTGGCGTTGGTGCGGTGGTGAAGCCTGAGAAAGAATTAATTGCGGCGGCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287550" ref_strand="+" ref_description="SGN-E287550 [cLES-9-L1]">
      <seq>agagttagcaattcactccaaaattcatccgaattcaactcggcatgtgattcagtctatgatgattgtctctccctatcacagcacgctttcgccggagtgaaaccctaccagcttttctccgccgtggaacgcctgcacgcttctctctctccctccgtacctctcataaaaaattgggttaaatcgcctccgacccgattacaggtcgataaggccttcaaaatcgtgtcaacgcgccgatccggcgaaaaggagagtgaaattgtgcttgggaacgaggaattcaaggagttctcagtggaggtattttcggacgctgtcgtttcgtgtgcagggaaagagcttctaaagcgggttccggttggtgctttggggatcgctggcgttggtgcggtggtgaagcctgggaaagaattaattgcggcggcgattggtgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60518" stop="61560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60818" g_stop="61260" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-E287550" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60818" e_stop="61260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTAGCAATTCACTCCAAAATTCATCCGAATTCAACTCGGCATGTGATTCAGTCTATGATGATTGTCTCTCCCTATCACAGCACGCTTTCGCCGGAGTGAAACCCTACCAGCTTTTCTCCGCCGTGGAACGCCTGCACGCTTCTCTCTCTCCCTCCGTACCTCTCATAAAAAATTGGGTTAAATCGCCTCCGACCCGATTACAGGTCGATAAGGCCTTCAAAATCGTGTCAACGCGCCGATCCGGCGAAAAGGAGAGTGAAATTGTGCTTGGGAACGAGGAATTCAAGGAGTTCTCAGTGGAGGTATTTTCGGACGCTGTCGTTTCGTGTGCAGGGAAAGAGCTTCTAAAGCGGGTTCCGGTTGGTGCTTTGGGGATCGCTGGCGTTGGTGCGGTGGTGAAGCCTGGGAAAGAATTAATTGCGGCGGCGATTGGTGCTTA</genome_strand>
        <mrna_strand>AGAGTTAGCAATTCACTCCAAAATTCATCCGAATTCAACTCGGCATGTGATTCAGTCTATGATGATTGTCTCTCCCTATCACAGCACGCTTTCGCCGGAGTGAAACCCTACCAGCTTTTCTCCGCCGTGGAACGCCTGCACGCTTCTCTCTCTCCCTCCGTACCTCTCATAAAAAATTGGGTTAAATCGCCTCCGACCCGATTACAGGTCGATAAGGCCTTCAAAATCGTGTCAACGCGCCGATCCGGCGAAAAGGAGAGTGAAATTGTGCTTGGGAACGAGGAATTCAAGGAGTTCTCAGTGGAGGTATTTTCGGACGCTGTCGTTTCGTGTGCAGGGAAAGAGCTTCTAAAGCGGGTTCCGGTTGGTGCTTTGGGGATCGCTGGCGTTGGTGCGGTGGTGAAGCCTGGGAAAGAATTAATTGCGGCGGCGATTGGTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>278</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1259" PGL_stop="361"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1259" e_stop="1061"/>
            <exon e_start="566" e_stop="361"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1259" e_stop="1061" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="1060" i_stop="567" i_length="494"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="566" e_stop="361" e_length="206"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1259" stop="1061"/>
              <exon start="566" stop="361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279552" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGTGTTCCTCGGACAGACATTATATTTTTCTGTTCGCCTAATAATCCAACTGGTTCGGCGGCATCTAGGGAGCAGCTGACTAAATTGGTGCAATTTGCTAAAGATAATGGCTCGATCCTTGTTTATGATTCTGCATATGCTATGTATATATGTGATGACAGTCCAAAGTCCATCTTTGAGATTCCTGGAGCCAAAGAG : GTTGCCATTGAGGTTTCATCATTTTCGAAGTATGCTGGGTTCACTGGTGTTCGTTTAGGGTGGACTGCCATTCCCAAAGCACTCCTATATTCTGATGGATTTCCTGTAGCAAAAGACTTCAATCGCATTGTTTGTACAAGCTTCAATGGTGCATCCAACATTGCTCAAGCTGGTGGTCTGGCTTGCCTTTCACCTGATGGTTTCAA</gDNA_template>
            <first_frame> Q  C  S  S  D  R  H  Y  I  F  L  F  A  *  *  S  N  W  F  G  G  I  *  G  A  A  D  *  I  G  A  I  C  *  R  *  W  L  D  P  C  L  *  F  C  I  C  Y  V  Y  M  *  *  Q  S  K  V  H  L  *  D  S  W  S  Q  R   : G  C  H  *  G  F  I  I  F  E  V  C  W  V  H  W  C  S  F  R  V  D  C  H  S  Q  S  T  P  I  F  *  W  I  S  C  S  K  R  L  Q  S  H  C  L  Y  K  L  Q  W  C  I  Q  H  C  S  S  W  W  S  G  L  P  F  T  *  W  F  Q </first_frame>
            <second_frame>  S  V  P  R  T  D  I  I  F  F  C  S  P  N  N  P  T  G  S  A  A  S  R  E  Q  L  T  K  L  V  Q  F  A  K  D  N  G  S  I  L  V  Y  D  S  A  Y  A  M  Y  I  C  D  D  S  P  K  S  I  F  E  I  P  G  A  K  E  :  V  A  I  E  V  S  S  F  S  K  Y  A  G  F  T  G  V  R  L  G  W  T  A  I  P  K  A  L  L  Y  S  D  G  F  P  V  A  K  D  F  N  R  I  V  C  T  S  F  N  G  A  S  N  I  A  Q  A  G  G  L  A  C  L  S  P  D  G  F   </second_frame>
            <third_frame>   V  F  L  G  Q  T  L  Y  F  S  V  R  L  I  I  Q  L  V  R  R  H  L  G  S  S  *  L  N  W  C  N  L  L  K  I  M  A  R  S  L  F  M  I  L  H  M  L  C  I  Y  V  M  T  V  Q  S  P  S  L  R  F  L  E  P  K  R :   L  P  L  R  F  H  H  F  R  S  M  L  G  S  L  V  F  V  *  G  G  L  P  F  P  K  H  S  Y  I  L  M  D  F  L  *  Q  K  T  S  I  A  L  F  V  Q  A  S  M  V  H  P  T  L  L  K  L  V  V  W  L  A  F  H  L  M  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1258" stop="1061"/>
                    <exon start="566" stop="363"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVPRTDIIFFCSPNNPTGSAASREQLTKLVQFAKDNGSILVYDSAYAMYICDDSPKSIFEIPGAKEVAIEVSSFSKYAGFTGVRLGWTAIPKALLYSDGFPVAKDFNRIVCTSFNGASNIAQAGGLACLSPDGF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="4769" PGL_stop="1293"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4769" e_stop="4609"/>
            <exon e_start="4001" e_stop="3925"/>
            <exon e_start="3551" e_stop="3484"/>
            <exon e_start="3110" e_stop="2994"/>
            <exon e_start="2660" e_stop="2598"/>
            <exon e_start="2036" e_stop="1932"/>
            <exon e_start="1844" e_stop="1794"/>
            <exon e_start="1381" e_stop="1293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.795" acc_prob="0.669" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.210" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4769" e_stop="4609" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4608" i_stop="4002" i_length="607"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4001" e_stop="3925" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.795" acc_prob="0.669">
            <gDNA_intron_boundary i_start="3924" i_stop="3552" i_length="373"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3551" e_stop="3484" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.210">
            <gDNA_intron_boundary i_start="3483" i_stop="3111" i_length="373"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3110" e_stop="2994" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="2993" i_stop="2661" i_length="333"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="2660" e_stop="2598" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.944">
            <gDNA_intron_boundary i_start="2597" i_stop="2037" i_length="561"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="2036" e_stop="1932" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.994">
            <gDNA_intron_boundary i_start="1931" i_stop="1845" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="1844" e_stop="1794" e_length="51"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="1793" i_stop="1382" i_length="412"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="1381" e_stop="1293" e_length="89"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4769" stop="4609"/>
              <exon start="4001" stop="3925"/>
              <exon start="3551" stop="3502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277807" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4764" stop="4609"/>
              <exon start="4001" stop="3925"/>
              <exon start="3551" stop="3484"/>
              <exon start="3110" stop="3007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4764" stop="4609"/>
              <exon start="4001" stop="3925"/>
              <exon start="3551" stop="3484"/>
              <exon start="3110" stop="3020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4760" stop="4609"/>
              <exon start="4001" stop="3925"/>
              <exon start="3551" stop="3484"/>
              <exon start="3110" stop="2994"/>
              <exon start="2660" stop="2598"/>
              <exon start="2036" stop="1932"/>
              <exon start="1844" stop="1794"/>
              <exon start="1381" stop="1327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4694" stop="4609"/>
              <exon start="4001" stop="3925"/>
              <exon start="3551" stop="3484"/>
              <exon start="3110" stop="2994"/>
              <exon start="2660" stop="2598"/>
              <exon start="2036" stop="1932"/>
              <exon start="1844" stop="1794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4694" stop="4609"/>
              <exon start="4001" stop="3925"/>
              <exon start="3551" stop="3484"/>
              <exon start="3110" stop="2994"/>
              <exon start="2660" stop="2598"/>
              <exon start="2036" stop="1932"/>
              <exon start="1844" stop="1794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4693" stop="4609"/>
              <exon start="4001" stop="3925"/>
              <exon start="3551" stop="3484"/>
              <exon start="3110" stop="2994"/>
              <exon start="2660" stop="2598"/>
              <exon start="2036" stop="1932"/>
              <exon start="1844" stop="1794"/>
              <exon start="1381" stop="1340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4693" stop="4609"/>
              <exon start="4001" stop="3925"/>
              <exon start="3551" stop="3484"/>
              <exon start="3110" stop="2994"/>
              <exon start="2660" stop="2598"/>
              <exon start="2036" stop="1932"/>
              <exon start="1844" stop="1794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4681" stop="4609"/>
              <exon start="4001" stop="3925"/>
              <exon start="3551" stop="3484"/>
              <exon start="3110" stop="2994"/>
              <exon start="2660" stop="2598"/>
              <exon start="2036" stop="1932"/>
              <exon start="1844" stop="1794"/>
              <exon start="1381" stop="1293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3960" stop="3925"/>
              <exon start="3551" stop="3484"/>
              <exon start="3110" stop="2994"/>
              <exon start="2660" stop="2598"/>
              <exon start="2036" stop="1932"/>
              <exon start="1844" stop="1794"/>
              <exon start="1381" stop="1296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326356" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGTGGAAGATTAGGGTTCTTTTAAAAGCAGCTTTTGGGTTCTGAGGGCTCTACTCCACTGAGCTACACAAGGAAAAAATGGCAGCTATTCAGCAAAGTCTTTCTACTTCAATCTCTTCATCAGCATCTACTTTTCTGGGTCAGAACAAACTCCGTTTCAG : GAATCAGAATGTGTCAATGCCAGGCAAAACCAGTGGTATTGTCAGATGTGTTGCAACACCCTCTACGGAGAAAACTT : CTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAG : ATCGCAAGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGGTGACACTACCGAGCCCATTCCTGAAGTCATAACTTCTGCCATGGCAAAG : AGAGCACATGAACTGTCAACATTAAATGGTTACAGTGGTTATGGTGCTGAGCAAGGAGAAAAA : CAACTTAGAGCCTCCATTGCTTCTACCTATTATGCAAATGTTGGACTAGAAGAAAATGAGATCTTCGTTTCTGATGGTGCCAAAAGTGATATATCTCGACTTCAG : GTTCTTTTTGGATCTAATGTGAGTATGGCTGTGCAAGATCCATCATACCCG : GCTTATGTGGACTCGAGTGTTATTATGGGTCAAACTGGTCAGTTTCAGAAGGATGTGGAGAAGTATGGGAATATTGCATACATGAGATG</gDNA_template>
            <first_frame> G  W  K  I  R  V  L  L  K  A  A  F  G  F  *  G  L  Y  S  T  E  L  H  K  E  K  M  A  A  I  Q  Q  S  L  S  T  S  I  S  S  S  A  S  T  F  L  G  Q  N  K  L  R  F  R :   N  Q  N  V  S  M  P  G  K  T  S  G  I  V  R  C  V  A  T  P  S  T  E  K  T   : S  Y  K  T  Q  V  S  R  N  E  N  L  A  K  L  Q  A  G  Y  L  F  P  E  :  I  A  R  R  R  S  A  H  M  L  K  H  P  D  A  Q  I  I  S  L  G  I  G  D  T  T  E  P  I  P  E  V  I  T  S  A  M  A  K  :  R  A  H  E  L  S  T  L  N  G  Y  S  G  Y  G  A  E  Q  G  E  K  :  Q  L  R  A  S  I  A  S  T  Y  Y  A  N  V  G  L  E  E  N  E  I  F  V  S  D  G  A  K  S  D  I  S  R  L  Q  :  V  L  F  G  S  N  V  S  M  A  V  Q  D  P  S  Y  P  :  A  Y  V  D  S  S  V  I  M  G  Q  T  G  Q  F  Q  K  D  V  E  K  Y  G  N  I  A  Y  M  R   </first_frame>
            <second_frame>  G  G  R  L  G  F  F  *  K  Q  L  L  G  S  E  G  S  T  P  L  S  Y  T  R  K  K  W  Q  L  F  S  K  V  F  L  L  Q  S  L  H  Q  H  L  L  F  W  V  R  T  N  S  V  S   : G  I  R  M  C  Q  C  Q  A  K  P  V  V  L  S  D  V  L  Q  H  P  L  R  R  K  L  :  L  T  R  H  R  S  P  A  M  K  T  *  R  N  F  K  L  V  I  C  F  L  R :   S  Q  E  G  D  L  H  T  C  *  N  I  L  M  L  K  L  *  A  L  E  L  V  T  L  P  S  P  F  L  K  S  *  L  L  P  W  Q  R :   E  H  M  N  C  Q  H  *  M  V  T  V  V  M  V  L  S  K  E  K  N :   N  L  E  P  P  L  L  L  P  I  M  Q  M  L  D  *  K  K  M  R  S  S  F  L  M  V  P  K  V  I  Y  L  D  F  R :   F  F  L  D  L  M  *  V  W  L  C  K  I  H  H  T  R :   L  M  W  T  R  V  L  L  W  V  K  L  V  S  F  R  R  M  W  R  S  M  G  I  L  H  T  *  D  </second_frame>
            <third_frame>   V  E  D  *  G  S  F  K  S  S  F  W  V  L  R  A  L  L  H  *  A  T  Q  G  K  N  G  S  Y  S  A  K  S  F  Y  F  N  L  F  I  S  I  Y  F  S  G  S  E  Q  T  P  F  Q  :  E  S  E  C  V  N  A  R  Q  N  Q  W  Y  C  Q  M  C  C  N  T  L  Y  G  E  N  F :   L  Q  D  T  G  L  P  Q  *  K  L  S  E  T  S  S  W  L  S  V  S  *   : D  R  K  K  E  I  C  T  H  V  E  T  S  *  C  S  N  Y  K  P  W  N  W  *  H  Y  R  A  H  S  *  S  H  N  F  C  H  G  K   : E  S  T  *  T  V  N  I  K  W  L  Q  W  L  W  C  *  A  R  R  K   : T  T  *  S  L  H  C  F  Y  L  L  C  K  C  W  T  R  R  K  *  D  L  R  F  *  W  C  Q  K  *  Y  I  S  T  S   : G  S  F  W  I  *  C  E  Y  G  C  A  R  S  I  I  P   : G  L  C  G  L  E  C  Y  Y  G  S  N  W  S  V  S  E  G  C  G  E  V  W  E  Y  C  I  H  E  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4724" stop="4609"/>
                    <exon start="4001" stop="3925"/>
                    <exon start="3551" stop="3484"/>
                    <exon start="3110" stop="2994"/>
                    <exon start="2660" stop="2598"/>
                    <exon start="2036" stop="1932"/>
                    <exon start="1844" stop="1794"/>
                    <exon start="1381" stop="1295"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLYSTELHKEKMAAIQQSLSTSISSSASTFLGQNKLRFRNQNVSMPGKTSGIVRCVATPSTEKTSYKTQVSRNENLAKLQAGYLFPEIARRRSAHMLKHPDAQIISLGIGDTTEPIPEVITSAMAKRAHELSTLNGYSGYGAEQGEKQLRASIASTYYANVGLEENEIFVSDGAKSDISRLQVLFGSNVSMAVQDPSYPAYVDSSVIMGQTGQFQKDVEKYGNIAYMR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="4769" e_stop="4609"/>
            <exon e_start="4001" e_stop="3925"/>
            <exon e_start="3551" e_stop="3484"/>
            <exon e_start="3110" e_stop="2994"/>
            <exon e_start="2660" e_stop="2323"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.795" acc_prob="0.669" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.210" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4769" e_stop="4609" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4608" i_stop="4002" i_length="607"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4001" e_stop="3925" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.795" acc_prob="0.669">
            <gDNA_intron_boundary i_start="3924" i_stop="3552" i_length="373"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3551" e_stop="3484" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.210">
            <gDNA_intron_boundary i_start="3483" i_stop="3111" i_length="373"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3110" e_stop="2994" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="2993" i_stop="2661" i_length="333"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="2660" e_stop="2323" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4769" stop="4609"/>
              <exon start="4001" stop="3925"/>
              <exon start="3551" stop="3502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277807" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4764" stop="4609"/>
              <exon start="4001" stop="3925"/>
              <exon start="3551" stop="3484"/>
              <exon start="3110" stop="3007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4764" stop="4609"/>
              <exon start="4001" stop="3925"/>
              <exon start="3551" stop="3484"/>
              <exon start="3110" stop="3020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3951" stop="3925"/>
              <exon start="3551" stop="3484"/>
              <exon start="3110" stop="2994"/>
              <exon start="2660" stop="2323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327331" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGTGGAAGATTAGGGTTCTTTTAAAAGCAGCTTTTGGGTTCTGAGGGCTCTACTCCACTGAGCTACACAAGGAAAAAATGGCAGCTATTCAGCAAAGTCTTTCTACTTCAATCTCTTCATCAGCATCTACTTTTCTGGGTCAGAACAAACTCCGTTTCAG : GAATCAGAATGTGTCAATGCCAGGCAAAACCAGTGGTATTGTCAGATGTGTTGCAACACCCTCTACGGAGAAAACTT : CTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAG : ATCGCAAGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGGTGACACTACCGAGCCCATTCCTGAAGTCATAACTTCTGCCATGGCAAAG : AGAGCACATGAACTGTCAACATTAAATGGTTACAGTGGTTATGGTGCTGAGCAAGGAGAAAAAGTAAGTAGTGCCCCCTCTCGTCATATTTCAGTAATATGATATTAGCTCTACTATTTATTGTCCAATCCTTGTTTCTCTTCCTTCTTTTGCTACAATAATAATGGTTCTGGCCTTCACTGATAGTTTGTCTTTCCTCGTTTTGTACCAATTTGATTGTTCATTTGTCCTTTTCTTTCCTCAAATACATTGCAATATTCTTTATTCAGGTATCCACTCAATAAAGTTAAAAAACTTCCTCTTCTATTCATAACGTCATTAAGGGATGTGCAGATGTG</gDNA_template>
            <first_frame> G  W  K  I  R  V  L  L  K  A  A  F  G  F  *  G  L  Y  S  T  E  L  H  K  E  K  M  A  A  I  Q  Q  S  L  S  T  S  I  S  S  S  A  S  T  F  L  G  Q  N  K  L  R  F  R :   N  Q  N  V  S  M  P  G  K  T  S  G  I  V  R  C  V  A  T  P  S  T  E  K  T   : S  Y  K  T  Q  V  S  R  N  E  N  L  A  K  L  Q  A  G  Y  L  F  P  E  :  I  A  R  R  R  S  A  H  M  L  K  H  P  D  A  Q  I  I  S  L  G  I  G  D  T  T  E  P  I  P  E  V  I  T  S  A  M  A  K  :  R  A  H  E  L  S  T  L  N  G  Y  S  G  Y  G  A  E  Q  G  E  K  V  S  S  A  P  S  R  H  I  S  V  I  *  Y  *  L  Y  Y  L  L  S  N  P  C  F  S  S  F  F  C  Y  N  N  N  G  S  G  L  H  *  *  F  V  F  P  R  F  V  P  I  *  L  F  I  C  P  F  L  S  S  N  T  L  Q  Y  S  L  F  R  Y  P  L  N  K  V  K  K  L  P  L  L  F  I  T  S  L  R  D  V  Q  M   </first_frame>
            <second_frame>  G  G  R  L  G  F  F  *  K  Q  L  L  G  S  E  G  S  T  P  L  S  Y  T  R  K  K  W  Q  L  F  S  K  V  F  L  L  Q  S  L  H  Q  H  L  L  F  W  V  R  T  N  S  V  S   : G  I  R  M  C  Q  C  Q  A  K  P  V  V  L  S  D  V  L  Q  H  P  L  R  R  K  L  :  L  T  R  H  R  S  P  A  M  K  T  *  R  N  F  K  L  V  I  C  F  L  R :   S  Q  E  G  D  L  H  T  C  *  N  I  L  M  L  K  L  *  A  L  E  L  V  T  L  P  S  P  F  L  K  S  *  L  L  P  W  Q  R :   E  H  M  N  C  Q  H  *  M  V  T  V  V  M  V  L  S  K  E  K  K  *  V  V  P  P  L  V  I  F  Q  *  Y  D  I  S  S  T  I  Y  C  P  I  L  V  S  L  P  S  F  A  T  I  I  M  V  L  A  F  T  D  S  L  S  F  L  V  L  Y  Q  F  D  C  S  F  V  L  F  F  P  Q  I  H  C  N  I  L  Y  S  G  I  H  S  I  K  L  K  N  F  L  F  Y  S  *  R  H  *  G  M  C  R  C  </second_frame>
            <third_frame>   V  E  D  *  G  S  F  K  S  S  F  W  V  L  R  A  L  L  H  *  A  T  Q  G  K  N  G  S  Y  S  A  K  S  F  Y  F  N  L  F  I  S  I  Y  F  S  G  S  E  Q  T  P  F  Q  :  E  S  E  C  V  N  A  R  Q  N  Q  W  Y  C  Q  M  C  C  N  T  L  Y  G  E  N  F :   L  Q  D  T  G  L  P  Q  *  K  L  S  E  T  S  S  W  L  S  V  S  *   : D  R  K  K  E  I  C  T  H  V  E  T  S  *  C  S  N  Y  K  P  W  N  W  *  H  Y  R  A  H  S  *  S  H  N  F  C  H  G  K   : E  S  T  *  T  V  N  I  K  W  L  Q  W  L  W  C  *  A  R  R  K  S  K  *  C  P  L  S  S  Y  F  S  N  M  I  L  A  L  L  F  I  V  Q  S  L  F  L  F  L  L  L  L  Q  *  *  W  F  W  P  S  L  I  V  C  L  S  S  F  C  T  N  L  I  V  H  L  S  F  S  F  L  K  Y  I  A  I  F  F  I  Q  V  S  T  Q  *  S  *  K  T  S  S  S  I  H  N  V  I  K  G  C  A  D  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4724" stop="4609"/>
                    <exon start="4001" stop="3925"/>
                    <exon start="3551" stop="3484"/>
                    <exon start="3110" stop="2994"/>
                    <exon start="2660" stop="2559"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLYSTELHKEKMAAIQQSLSTSISSSASTFLGQNKLRFRNQNVSMPGKTSGIVRCVATPSTEKTSYKTQVSRNENLAKLQAGYLFPEIARRRSAHMLKHPDAQIISLGIGDTTEPIPEVITSAMAKRAHELSTLNGYSGYGAEQGEKVSSAPSRHISVI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2563" stop="2348"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YDISSTIYCPILVSLPSFATIIMVLAFTDSLSFLVLYQFDCSFVLFFPQIHCNILYSGIHSIKLKNFLFYS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="6062" PGL_stop="9790"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6062" e_stop="6123"/>
            <exon e_start="8029" e_stop="8085"/>
            <exon e_start="8169" e_stop="8372"/>
            <exon e_start="8516" e_stop="8575"/>
            <exon e_start="8874" e_stop="9000"/>
            <exon e_start="9342" e_stop="9790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.930" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.748" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6062" e_stop="6123" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.930" acc_prob="0.986">
            <gDNA_intron_boundary i_start="6124" i_stop="8028" i_length="1905"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8029" e_stop="8085" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.980">
            <gDNA_intron_boundary i_start="8086" i_stop="8168" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8169" e_stop="8372" e_length="204"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.748">
            <gDNA_intron_boundary i_start="8373" i_stop="8515" i_length="143"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8516" e_stop="8575" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.986">
            <gDNA_intron_boundary i_start="8576" i_stop="8873" i_length="298"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8874" e_stop="9000" e_length="127"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9001" i_stop="9341" i_length="341"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="9342" e_stop="9790" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6062" stop="6123"/>
              <exon start="8029" stop="8085"/>
              <exon start="8169" stop="8372"/>
              <exon start="8516" stop="8575"/>
              <exon start="8874" stop="8895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6064" stop="6123"/>
              <exon start="8029" stop="8085"/>
              <exon start="8169" stop="8372"/>
              <exon start="8516" stop="8533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6065" stop="6123"/>
              <exon start="8029" stop="8085"/>
              <exon start="8169" stop="8372"/>
              <exon start="8516" stop="8575"/>
              <exon start="8874" stop="9000"/>
              <exon start="9342" stop="9676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6066" stop="6123"/>
              <exon start="8029" stop="8085"/>
              <exon start="8169" stop="8372"/>
              <exon start="8516" stop="8575"/>
              <exon start="8874" stop="9000"/>
              <exon start="9342" stop="9699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6071" stop="6123"/>
              <exon start="8029" stop="8085"/>
              <exon start="8169" stop="8372"/>
              <exon start="8516" stop="8534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6074" stop="6123"/>
              <exon start="8029" stop="8085"/>
              <exon start="8169" stop="8372"/>
              <exon start="8516" stop="8575"/>
              <exon start="8874" stop="9000"/>
              <exon start="9342" stop="9407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6080" stop="6123"/>
              <exon start="8029" stop="8085"/>
              <exon start="8169" stop="8372"/>
              <exon start="8516" stop="8575"/>
              <exon start="8874" stop="9000"/>
              <exon start="9342" stop="9475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6080" stop="6123"/>
              <exon start="8029" stop="8085"/>
              <exon start="8169" stop="8372"/>
              <exon start="8516" stop="8575"/>
              <exon start="8874" stop="8996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6082" stop="6123"/>
              <exon start="8029" stop="8085"/>
              <exon start="8169" stop="8372"/>
              <exon start="8516" stop="8575"/>
              <exon start="8874" stop="9000"/>
              <exon start="9342" stop="9514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6085" stop="6123"/>
              <exon start="8029" stop="8085"/>
              <exon start="8169" stop="8372"/>
              <exon start="8516" stop="8575"/>
              <exon start="8874" stop="9000"/>
              <exon start="9342" stop="9380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8029" stop="8085"/>
              <exon start="8169" stop="8372"/>
              <exon start="8516" stop="8575"/>
              <exon start="8874" stop="9000"/>
              <exon start="9342" stop="9700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8047" stop="8085"/>
              <exon start="8169" stop="8372"/>
              <exon start="8516" stop="8575"/>
              <exon start="8874" stop="9000"/>
              <exon start="9342" stop="9514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8279" stop="8372"/>
              <exon start="8516" stop="8575"/>
              <exon start="8874" stop="9000"/>
              <exon start="9342" stop="9700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9564" stop="9790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302829" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAGATCAGGCGAAATCCTAAGGAAAATTGATTTGAAAAATTCGACATGGATCTTAATCCA : CCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAG : GCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAG : TCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACA : GCTGTTGCTTGGTTCTTTCTCGCGATATTCTCCCTCATTAGGTTCCAAGCTGATTATCTTCTCGTTGTTGGAGTTTGCTTGACTCTCAGCGTCGCAAATATTGTTGGTTTTACTAGATGCCGCAAAG : ATGCTAAGAAGCAGCTTCAAGCATTTGCAACCCAGACCCTCACTTCTCGGTTCTCCTCTACTCTACAGTCGGCATTTAGTGTTGTTTGAACAATTAATACAGAACAAGCTACTCGTGAGAGGAAACTGGTCGTCAGTGTCCACCTCTACGAACAATCATGTATTGATTATATAATGGTGGTTTGTATACGCTGTGAAATTATGATGGCACATATCGGAAGGATGCTTAGGAGATTTTGACATGGTGTTAATTTGGACCTCTCCTTTATTGAGGTCTTGTACATGCAGAACATGAACGAACTGGGAAAACGTTTTTGTTCCTTTCAGTTTTCATGAATCCAATTGCTTCATTGTATTTTTATTTTTTTTGCACCGCACGGCTGGTGAATCGACGTATGGGCCATATGCATAAATGTATCTGAAATTTGCCATTCACGTTCTGCAGCAAGT</gDNA_template>
            <first_frame> E  R  S  G  E  I  L  R  K  I  D  L  K  N  S  T  W  I  L  I  H :   L  Q  G  R  T  M  H  T  H  R  Y  V  F  S  M  C  S  S  R :   Q  Q  H  *  R  F  I  F  C  Q  L  Y  L  L  I  V  L  L  S  S  L  W  *  L  F  F  *  L  L  L  T  F  G  W  L  R  T  S  V  D  V  F  L  W  V  *  G  G  G  M  K  *  M  T  M  A  R  V  C  G  D  L  S  A  L  I  K  S :   Q  W  L  A  *  T  R  R  I  P  G  C  F  G  G  L  C  T  *  Q :   L  L  L  G  S  F  S  R  Y  S  P  S  L  G  S  K  L  I  I  F  S  L  L  E  F  A  *  L  S  A  S  Q  I  L  L  V  L  L  D  A  A  K  :  M  L  R  S  S  F  K  H  L  Q  P  R  P  S  L  L  G  S  P  L  L  Y  S  R  H  L  V  L  F  E  Q  L  I  Q  N  K  L  L  V  R  G  N  W  S  S  V  S  T  S  T  N  N  H  V  L  I  I  *  W  W  F  V  Y  A  V  K  L  *  W  H  I  S  E  G  C  L  G  D  F  D  M  V  L  I  W  T  S  P  L  L  R  S  C  T  C  R  T  *  T  N  W  E  N  V  F  V  P  F  S  F  H  E  S  N  C  F  I  V  F  L  F  F  L  H  R  T  A  G  E  S  T  Y  G  P  Y  A  *  M  Y  L  K  F  A  I  H  V  L  Q  Q   </first_frame>
            <second_frame>  R  D  Q  A  K  S  *  G  K  L  I  *  K  I  R  H  G  S  *  S   : T  C  R  G  G  L  C  T  P  T  D  M  F  F  P  C  A  L  Q   : G  S  S  I  S  V  L  Y  S  V  S  F  I  C  *  *  F  C  Y  H  L  C  G  N  C  S  F  S  C  S  *  L  L  G  G  *  E  R  Q  W  T  Y  S  C  G  F  K  V  V  E  *  N  R  *  Q  W  R  E  C  V  E  I  *  V  P  *  S  R   : V  N  G  S  H  E  Q  E  G  F  L  A  V  L  V  D  F  V  P  N   : S  C  C  L  V  L  S  R  D  I  L  P  H  *  V  P  S  *  L  S  S  R  C  W  S  L  L  D  S  Q  R  R  K  Y  C  W  F  Y  *  M  P  Q  R :   C  *  E  A  A  S  S  I  C  N  P  D  P  H  F  S  V  L  L  Y  S  T  V  G  I  *  C  C  L  N  N  *  Y  R  T  S  Y  S  *  E  E  T  G  R  Q  C  P  P  L  R  T  I  M  Y  *  L  Y  N  G  G  L  Y  T  L  *  N  Y  D  G  T  Y  R  K  D  A  *  E  I  L  T  W  C  *  F  G  P  L  L  Y  *  G  L  V  H  A  E  H  E  R  T  G  K  T  F  L  F  L  S  V  F  M  N  P  I  A  S  L  Y  F  Y  F  F  C  T  A  R  L  V  N  R  R  M  G  H  M  H  K  C  I  *  N  L  P  F  T  F  C  S  K  </second_frame>
            <third_frame>   E  I  R  R  N  P  K  E  N  *  F  E  K  F  D  M  D  L  N  P  :  P  A  G  E  D  Y  A  H  P  Q  I  C  F  F  H  V  L  F  K  :  A  A  A  L  A  F  Y  I  L  S  A  L  F  V  D  S  F  V  I  I  F  V  V  T  V  L  L  A  A  L  D  F  W  V  V  K  N  V  S  G  R  I  L  V  G  L  R  W  W  N  E  I  D  D  N  G  E  S  V  W  R  F  E  C  L  D  Q  E  :  S  M  A  R  M  N  K  K  D  S  W  L  F  W  W  T  L  Y  L  T  :  A  V  A  W  F  F  L  A  I  F  S  L  I  R  F  Q  A  D  Y  L  L  V  V  G  V  C  L  T  L  S  V  A  N  I  V  G  F  T  R  C  R  K   : D  A  K  K  Q  L  Q  A  F  A  T  Q  T  L  T  S  R  F  S  S  T  L  Q  S  A  F  S  V  V  *  T  I  N  T  E  Q  A  T  R  E  R  K  L  V  V  S  V  H  L  Y  E  Q  S  C  I  D  Y  I  M  V  V  C  I  R  C  E  I  M  M  A  H  I  G  R  M  L  R  R  F  *  H  G  V  N  L  D  L  S  F  I  E  V  L  Y  M  Q  N  M  N  E  L  G  K  R  F  C  S  F  Q  F  S  *  I  Q  L  L  H  C  I  F  I  F  F  A  P  H  G  W  *  I  D  V  W  A  I  C  I  N  V  S  E  I  C  H  S  R  S  A  A  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6094" stop="6123"/>
                    <exon start="8029" stop="8085"/>
                    <exon start="8169" stop="8372"/>
                    <exon start="8516" stop="8575"/>
                    <exon start="8874" stop="9000"/>
                    <exon start="9342" stop="9430"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEKFDMDLNPPAGEDYAHPQICFFHVLFKAAALAFYILSALFVDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEIDDNGESVWRFECLDQESMARMNKKDSWLFWWTLYLTAVAWFFLAIFSLIRFQADYLLVVGVCLTLSVANIVGFTRCRKDAKKQLQAFATQTLTSRFSSTLQSAFSVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="10834" PGL_stop="14530"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10834" e_stop="11044"/>
            <exon e_start="11562" e_stop="11696"/>
            <exon e_start="11847" e_stop="11933"/>
            <exon e_start="12028" e_stop="12118"/>
            <exon e_start="12263" e_stop="12317"/>
            <exon e_start="12531" e_stop="12591"/>
            <exon e_start="13025" e_stop="13246"/>
            <exon e_start="13557" e_stop="13673"/>
            <exon e_start="13759" e_stop="13848"/>
            <exon e_start="14194" e_stop="14530"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.878" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.502" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.779" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.881" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10834" e_stop="11044" e_length="211"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.961">
            <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11562" e_stop="11696" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.878" acc_prob="0.988">
            <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11847" e_stop="11933" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.502">
            <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12028" e_stop="12118" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12263" e_stop="12317" e_length="55"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.779">
            <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12531" e_stop="12591" e_length="61"/>
          </exon>
          <intron i_serial="6" don_prob="0.864" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="13025" e_stop="13246" e_length="222"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="13247" i_stop="13556" i_length="310"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="13557" e_stop="13673" e_length="117"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="13674" i_stop="13758" i_length="85"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="13759" e_stop="13848" e_length="90"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.881">
            <gDNA_intron_boundary i_start="13849" i_stop="14193" i_length="345"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="14194" e_stop="14530" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10834" stop="11044"/>
              <exon start="11562" stop="11696"/>
              <exon start="11847" stop="11933"/>
              <exon start="12028" stop="12118"/>
              <exon start="12263" stop="12317"/>
              <exon start="12531" stop="12582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10847" stop="11044"/>
              <exon start="11562" stop="11696"/>
              <exon start="11847" stop="11933"/>
              <exon start="12028" stop="12118"/>
              <exon start="12263" stop="12317"/>
              <exon start="12531" stop="12591"/>
              <exon start="13025" stop="13211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10848" stop="11044"/>
              <exon start="11562" stop="11696"/>
              <exon start="11847" stop="11933"/>
              <exon start="12028" stop="12118"/>
              <exon start="12263" stop="12311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10857" stop="11044"/>
              <exon start="11562" stop="11634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10866" stop="11044"/>
              <exon start="11562" stop="11696"/>
              <exon start="11847" stop="11933"/>
              <exon start="12028" stop="12118"/>
              <exon start="12263" stop="12317"/>
              <exon start="12531" stop="12591"/>
              <exon start="13025" stop="13246"/>
              <exon start="13557" stop="13622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10867" stop="11044"/>
              <exon start="11562" stop="11696"/>
              <exon start="11847" stop="11933"/>
              <exon start="12028" stop="12118"/>
              <exon start="12263" stop="12317"/>
              <exon start="12531" stop="12591"/>
              <exon start="13025" stop="13153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10867" stop="11044"/>
              <exon start="11562" stop="11696"/>
              <exon start="11847" stop="11933"/>
              <exon start="12028" stop="12118"/>
              <exon start="12263" stop="12317"/>
              <exon start="12531" stop="12573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10867" stop="11044"/>
              <exon start="11562" stop="11696"/>
              <exon start="11847" stop="11933"/>
              <exon start="12028" stop="12109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10870" stop="11044"/>
              <exon start="11562" stop="11696"/>
              <exon start="11847" stop="11933"/>
              <exon start="12028" stop="12118"/>
              <exon start="12263" stop="12317"/>
              <exon start="12531" stop="12591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10870" stop="11044"/>
              <exon start="11562" stop="11696"/>
              <exon start="11847" stop="11933"/>
              <exon start="12028" stop="12118"/>
              <exon start="12263" stop="12311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10871" stop="11044"/>
              <exon start="11562" stop="11696"/>
              <exon start="11847" stop="11933"/>
              <exon start="12028" stop="12057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10872" stop="11044"/>
              <exon start="11562" stop="11696"/>
              <exon start="11847" stop="11933"/>
              <exon start="12028" stop="12118"/>
              <exon start="12263" stop="12317"/>
              <exon start="12531" stop="12591"/>
              <exon start="13025" stop="13246"/>
              <exon start="13557" stop="13642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10872" stop="11044"/>
              <exon start="11562" stop="11696"/>
              <exon start="11847" stop="11933"/>
              <exon start="12028" stop="12118"/>
              <exon start="12263" stop="12317"/>
              <exon start="12531" stop="12591"/>
              <exon start="13025" stop="13246"/>
              <exon start="13557" stop="13626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10872" stop="11044"/>
              <exon start="11562" stop="11696"/>
              <exon start="11847" stop="11933"/>
              <exon start="12028" stop="12118"/>
              <exon start="12263" stop="12317"/>
              <exon start="12531" stop="12591"/>
              <exon start="13025" stop="13246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10873" stop="11044"/>
              <exon start="11562" stop="11696"/>
              <exon start="11847" stop="11933"/>
              <exon start="12028" stop="12118"/>
              <exon start="12263" stop="12317"/>
              <exon start="12531" stop="12591"/>
              <exon start="13025" stop="13144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10876" stop="11044"/>
              <exon start="11562" stop="11696"/>
              <exon start="11847" stop="11933"/>
              <exon start="12028" stop="12118"/>
              <exon start="12263" stop="12317"/>
              <exon start="12531" stop="12591"/>
              <exon start="13025" stop="13125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10882" stop="11044"/>
              <exon start="11562" stop="11696"/>
              <exon start="11847" stop="11933"/>
              <exon start="12028" stop="12118"/>
              <exon start="12263" stop="12317"/>
              <exon start="12531" stop="12591"/>
              <exon start="13025" stop="13043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10884" stop="11044"/>
              <exon start="11562" stop="11696"/>
              <exon start="11847" stop="11933"/>
              <exon start="12028" stop="12118"/>
              <exon start="12263" stop="12317"/>
              <exon start="12531" stop="12591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10885" stop="11044"/>
              <exon start="11562" stop="11634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10890" stop="11044"/>
              <exon start="11562" stop="11696"/>
              <exon start="11847" stop="11933"/>
              <exon start="12028" stop="12118"/>
              <exon start="12263" stop="12317"/>
              <exon start="12531" stop="12591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10891" stop="11044"/>
              <exon start="11562" stop="11696"/>
              <exon start="11847" stop="11933"/>
              <exon start="12028" stop="12118"/>
              <exon start="12263" stop="12317"/>
              <exon start="12531" stop="12591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10893" stop="11044"/>
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            </gDNA_exon_coordinates>
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          </PGS_line>
          <PGS_line>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E365870" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358654" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266754" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            </gDNA_exon_coordinates>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292097" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294828" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293356" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E740937" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E296545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729774" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E295525" strand="+"/>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="12531" stop="12580"/>
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            <referenceDNA id="SGN-E291344" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E737297" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E366473" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E297834" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E295086" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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            <referenceDNA id="SGN-E321122" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E740270" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E713955" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E299196" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E373798" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E734700" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13585" stop="13673"/>
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            <referenceDNA id="SGN-E294060" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13592" stop="13673"/>
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            <referenceDNA id="SGN-E200470" strand="-"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13605" stop="13673"/>
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            <referenceDNA id="SGN-E292292" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13613" stop="13673"/>
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              <exon start="14194" stop="14523"/>
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            <referenceDNA id="SGN-E738883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13806" stop="13848"/>
              <exon start="14194" stop="14523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13819" stop="13848"/>
              <exon start="14194" stop="14527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13828" stop="13848"/>
              <exon start="14194" stop="14523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14194" stop="14524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230544" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATGGACATCAAGAAAATCATCATAGCCCTTCTTCTTCTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG : TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG : GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG : TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG : GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA : GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG : GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAG : GATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAG : GCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAG : CATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAACATTTTTT</gDNA_template>
            <first_frame> I  W  T  S  R  K  S  S  *  P  F  F  F  F  F  I  L  C  P  K  F  F  F  T  L  R  K  E  K  K  A  P  N  Q  Q  Q  H  G  *  F  G  C  Y  S  T  Q  T  A  F  F  L  S  P  S  F  F  Q  F  *  L  Q  W  C  Q  I  D  L  L  I  S   : V  *  E  E  T  M  L  V  K  R  S  I  A  S  Y  S  L  E  *  K  E  N  P  D  N  G  R  H  A  I  H  W  C  V  P  I  E  T  S  C  E  R  R  P  P   : G  Y  S  I  H  K  R  K  S  S  N  L  S  T  I  A  R  *  I  G  P  G  L  C  *  F  L  L  Q   : V  I  A  L  E  G  *  Q  N  G  F  R  F  C  E  E  Q  S  F  C  R  G  L  *  C  C  V  *  H  K  W :   T  *  S  N  *  S  G  A  N  I  G  C  I  T  *  S  R  T  :  V  H  L  L  L  F  S  W  C  I  P  *  N  *  L  F  T  T  F  *   : G  *  C  R  *  P  E  E  *  A  *  R  K  A  *  D  R  K  L  V  S  I  T  R  C  *  L  D  F  S  K  A  C  L  Y  L  W  A  T  *  L  Q  S  C  *  R  V  V  L  P  P  I  E  G  W  S  P  N  S  D  S  *  L  R  D  A  N  N  S  T  W  T  C  E   : G  S  C  K  G  F  C  S  G  S  W  K  *  E  S  K  Q  A  S  I  *  H  I  R  R  E  I  C  H  I  *  W  I  S  *  G  L  R  Q   : G  W  W  F  P  G  T  R  A  C  S  L  Q  P  *  G  V  R  F  W  Q  E  E  S  I  P  I  P  *  P   : A  F  L  Y  I  H  R  E  V  K  G  *  A  R  M  E  T  *  F  *  S  G  G  R  S  Y  R  L  L  Q  P  R  F  R  T  R  N  I  Q  E  S  S  *  F  L  Y  R  *  Y  D  S  *  K  E  T  S  S  P  E  L  I  F  L  F  F  I  S  L  V  L  V  S  C  F  F  S  K  K  F  T  S  H  *  W  Q  T  I  *  N  F  P  C  I  L  T  S  L  K  *  N  E  *  Q  L  L  S  F  C  H  Q  H  F   </first_frame>
            <second_frame>  Y  G  H  Q  E  N  H  H  S  P  S  S  S  S  L  F  S  A  P  S  S  S  S  H  *  G  R  K  K  R  H  Q  I  N  N  N  M  A  S  L  V  A  I  Q  P  K  Q  P  S  F  S  L  L  P  S  S  N  S  D  F  N  G  A  R  L  I  S  S  F  Q  :  Y  K  R  K  P  C  L  S  K  G  A  L  Q  V  T  A  S  S  E  K  K  I  L  I  M  G  G  T  R  F  I  G  V  F  L  S  R  L  L  V  K  E  G  H  Q  :  V  T  L  F  T  R  G  K  A  P  I  S  Q  Q  L  P  G  E  S  D  Q  D  Y  A  D  F  S  S  K  :  L  L  H  L  K  G  D  R  M  D  F  D  F  V  K  S  S  L  S  A  E  G  Y  D  V  V  Y  D  I  N   : G  R  E  A  T  E  V  E  P  I  L  D  A  L  P  N  L  E  Q :   Y  I  Y  C  S  S  A  G  V  Y  L  K  T  D  Y  L  P  H  F  E  :  V  D  A  G  D  P  K  S  R  H  K  G  K  L  E  T  E  S  L  L  V  S  R  D  V  N  W  T  S  L  R  P  V  Y  I  Y  G  P  L  N  Y  N  P  V  E  E  W  F  F  H  R  L  K  A  G  R  P  I  P  I  P  N  S  G  M  Q  I  T  Q  L  G  H  V  K  :  D  L  A  K  A  F  V  Q  V  L  G  N  E  K  A  S  K  Q  V  F  N  I  S  G  E  K  Y  V  T  F  D  G  L  A  K  A  C  A  K  :  A  G  G  F  P  E  P  E  L  V  H  Y  N  P  K  E  F  D  F  G  K  K  K  A  F  P  F  R  D  Q  :  H  F  F  T  S  I  E  K  S  K  A  E  L  G  W  K  P  D  F  D  L  V  E  G  L  T  D  S  Y  N  L  D  F  G  R  G  T  F  R  K  A  A  D  F  S  T  D  D  M  I  L  E  K  K  L  V  P  Q  S  *  Y  F  C  F  S  F  H  *  F  W  F  L  A  F  S  P  R  S  S  Q  V  I  S  G  K  L  F  E  I  F  L  V  Y  *  L  H  *  N  E  M  N  D  N  Y  C  H  F  A  I  N  I  F  </second_frame>
            <third_frame>   M  D  I  K  K  I  I  I  A  L  L  L  L  L  Y  S  L  P  Q  V  L  L  H  T  E  E  G  K  K  G  T  K  S  T  T  T  W  L  V  W  L  L  F  N  P  N  S  L  L  S  L  S  F  L  L  P  I  L  T  S  M  V  P  D  *  S  P  H  F  S :   I  R  G  N  H  A  C  Q  K  E  H  C  K  L  Q  P  R  V  K  R  K  S  *  *  W  E  A  R  D  S  L  V  C  S  Y  R  D  F  L  *  K  K  A  T  R :   L  L  Y  S  Q  E  E  K  L  Q  S  L  N  N  C  Q  V  N  R  T  R  I  M  L  I  S  P  P  S :   Y  C  T  *  R  V  T  E  W  I  S  I  L  *  R  A  V  F  L  Q  R  A  M  M  L  C  M  T  *  M  :  D  V  K  Q  L  K  W  S  Q  Y  W  M  H  Y  L  I  *  N   : S  T  S  T  A  L  Q  L  V  Y  T  L  K  L  I  I  Y  H  I  L  R :   L  M  Q  V  T  R  R  V  G  I  K  E  S  L  R  Q  K  A  C  *  Y  H  E  M  L  I  G  L  L  *  G  L  F  I  F  M  G  H  L  T  T  I  L  L  K  S  G  S  S  T  D  *  R  L  V  A  Q  F  R  F  L  T  Q  G  C  K  *  L  N  L  D  M  *  R :   I  L  Q  R  L  L  F  R  F  L  E  M  R  K  Q  A  S  K  Y  L  T  Y  P  E  R  N  M  S  H  L  M  D  *  L  R  L  A  P  R :   L  V  V  S  R  N  P  S  L  F  I  T  T  L  R  S  S  I  L  A  R  R  K  H  S  H  S  V  T  S :   I  S  L  H  P  S  R  S  Q  R  L  S  *  D  G  N  L  I  L  I  W  W  K  V  L  Q  T  L  T  T  *  I  S  D  E  E  H  S  G  K  Q  L  I  S  L  Q  M  I  *  F  L  K  R  N  *  F  P  R  A  N  I  S  V  F  H  F  I  S  F  G  F  L  L  F  L  Q  E  V  H  K  S  L  V  A  N  Y  L  K  F  S  L  Y  I  N  F  T  K  M  K  *  M  T  T  I  V  I  L  P  S  T  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10910" stop="11044"/>
                    <exon start="11562" stop="11696"/>
                    <exon start="11847" stop="11933"/>
                    <exon start="12028" stop="12118"/>
                    <exon start="12263" stop="12317"/>
                    <exon start="12531" stop="12591"/>
                    <exon start="13025" stop="13246"/>
                    <exon start="13557" stop="13673"/>
                    <exon start="13759" stop="13848"/>
                    <exon start="14194" stop="14373"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1170</number_coding_nucleotides>
                  <number_encoded_amino_acids>390</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRKKRHQINNNMASLVAIQPKQPSFSLLPSSNSDFNGARLISSFQYKRKPCLSKGALQVTASSEKKILIMGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPISQQLPGESDQDYADFSSKLLHLKGDRMDFDFVKSSLSAEGYDVVYDINGREATEVEPILDALPNLEQYIYCSSAGVYLKTDYLPHFEVDAGDPKSRHKGKLETESLLVSRDVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGMQITQLGHVKDLAKAFVQVLGNEKASKQVFNISGEKYVTFDGLAKACAKAGGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFTSIEKSKAELGWKPDFDLVEGLTDSYNLDFGRGTFRKAADFSTDDMILEKKLVPQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12262" e_stop="12317"/>
            <exon e_start="12531" e_stop="12591"/>
            <exon e_start="13025" e_stop="13246"/>
            <exon e_start="13557" e_stop="13673"/>
            <exon e_start="13759" e_stop="13848"/>
            <exon e_start="14194" e_stop="14530"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.779" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.881" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12262" e_stop="12317" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.779">
            <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12531" e_stop="12591" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.864" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13025" e_stop="13246" e_length="222"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="13247" i_stop="13556" i_length="310"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13557" e_stop="13673" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="13674" i_stop="13758" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="13759" e_stop="13848" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.881">
            <gDNA_intron_boundary i_start="13849" i_stop="14193" i_length="345"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="14194" e_stop="14530" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12262" stop="12317"/>
              <exon start="12531" stop="12591"/>
              <exon start="13025" stop="13246"/>
              <exon start="13557" stop="13673"/>
              <exon start="13759" stop="13800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12262" stop="12317"/>
              <exon start="12531" stop="12591"/>
              <exon start="13025" stop="13075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12541" stop="12591"/>
              <exon start="13025" stop="13246"/>
              <exon start="13557" stop="13673"/>
              <exon start="13759" stop="13848"/>
              <exon start="14194" stop="14261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12547" stop="12591"/>
              <exon start="13025" stop="13246"/>
              <exon start="13557" stop="13673"/>
              <exon start="13759" stop="13848"/>
              <exon start="14194" stop="14308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13025" stop="13246"/>
              <exon start="13557" stop="13673"/>
              <exon start="13759" stop="13848"/>
              <exon start="14194" stop="14530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13028" stop="13246"/>
              <exon start="13557" stop="13673"/>
              <exon start="13759" stop="13848"/>
              <exon start="14194" stop="14517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13092" stop="13246"/>
              <exon start="13557" stop="13673"/>
              <exon start="13759" stop="13848"/>
              <exon start="14194" stop="14352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13114" stop="13246"/>
              <exon start="13557" stop="13673"/>
              <exon start="13759" stop="13848"/>
              <exon start="14194" stop="14523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13557" stop="13673"/>
              <exon start="13759" stop="13848"/>
              <exon start="14194" stop="14529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13585" stop="13673"/>
              <exon start="13759" stop="13848"/>
              <exon start="14194" stop="14527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13592" stop="13673"/>
              <exon start="13759" stop="13848"/>
              <exon start="14194" stop="14523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200470" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13605" stop="13673"/>
              <exon start="13759" stop="13848"/>
              <exon start="14194" stop="14523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13613" stop="13673"/>
              <exon start="13759" stop="13848"/>
              <exon start="14194" stop="14523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13806" stop="13848"/>
              <exon start="14194" stop="14523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13819" stop="13848"/>
              <exon start="14194" stop="14527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13828" stop="13848"/>
              <exon start="14194" stop="14523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14194" stop="14524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230544" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA : GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG : GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAG : GATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAG : GCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAG : CATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAACATTTTTT</gDNA_template>
            <first_frame> G  R  E  A  T  E  V  E  P  I  L  D  A  L  P  N  L  E  Q :   Y  I  Y  C  S  S  A  G  V  Y  L  K  T  D  Y  L  P  H  F  E  :  V  D  A  G  D  P  K  S  R  H  K  G  K  L  E  T  E  S  L  L  V  S  R  D  V  N  W  T  S  L  R  P  V  Y  I  Y  G  P  L  N  Y  N  P  V  E  E  W  F  F  H  R  L  K  A  G  R  P  I  P  I  P  N  S  G  M  Q  I  T  Q  L  G  H  V  K  :  D  L  A  K  A  F  V  Q  V  L  G  N  E  K  A  S  K  Q  V  F  N  I  S  G  E  K  Y  V  T  F  D  G  L  A  K  A  C  A  K  :  A  G  G  F  P  E  P  E  L  V  H  Y  N  P  K  E  F  D  F  G  K  K  K  A  F  P  F  R  D  Q  :  H  F  F  T  S  I  E  K  S  K  A  E  L  G  W  K  P  D  F  D  L  V  E  G  L  T  D  S  Y  N  L  D  F  G  R  G  T  F  R  K  A  A  D  F  S  T  D  D  M  I  L  E  K  K  L  V  P  Q  S  *  Y  F  C  F  S  F  H  *  F  W  F  L  A  F  S  P  R  S  S  Q  V  I  S  G  K  L  F  E  I  F  L  V  Y  *  L  H  *  N  E  M  N  D  N  Y  C  H  F  A  I  N  I  F  </first_frame>
            <second_frame>  D  V  K  Q  L  K  W  S  Q  Y  W  M  H  Y  L  I  *  N   : S  T  S  T  A  L  Q  L  V  Y  T  L  K  L  I  I  Y  H  I  L  R :   L  M  Q  V  T  R  R  V  G  I  K  E  S  L  R  Q  K  A  C  *  Y  H  E  M  L  I  G  L  L  *  G  L  F  I  F  M  G  H  L  T  T  I  L  L  K  S  G  S  S  T  D  *  R  L  V  A  Q  F  R  F  L  T  Q  G  C  K  *  L  N  L  D  M  *  R :   I  L  Q  R  L  L  F  R  F  L  E  M  R  K  Q  A  S  K  Y  L  T  Y  P  E  R  N  M  S  H  L  M  D  *  L  R  L  A  P  R :   L  V  V  S  R  N  P  S  L  F  I  T  T  L  R  S  S  I  L  A  R  R  K  H  S  H  S  V  T  S :   I  S  L  H  P  S  R  S  Q  R  L  S  *  D  G  N  L  I  L  I  W  W  K  V  L  Q  T  L  T  T  *  I  S  D  E  E  H  S  G  K  Q  L  I  S  L  Q  M  I  *  F  L  K  R  N  *  F  P  R  A  N  I  S  V  F  H  F  I  S  F  G  F  L  L  F  L  Q  E  V  H  K  S  L  V  A  N  Y  L  K  F  S  L  Y  I  N  F  T  K  M  K  *  M  T  T  I  V  I  L  P  S  T  F  F </second_frame>
            <third_frame>   T  *  S  N  *  S  G  A  N  I  G  C  I  T  *  S  R  T  :  V  H  L  L  L  F  S  W  C  I  P  *  N  *  L  F  T  T  F  *   : G  *  C  R  *  P  E  E  *  A  *  R  K  A  *  D  R  K  L  V  S  I  T  R  C  *  L  D  F  S  K  A  C  L  Y  L  W  A  T  *  L  Q  S  C  *  R  V  V  L  P  P  I  E  G  W  S  P  N  S  D  S  *  L  R  D  A  N  N  S  T  W  T  C  E   : G  S  C  K  G  F  C  S  G  S  W  K  *  E  S  K  Q  A  S  I  *  H  I  R  R  E  I  C  H  I  *  W  I  S  *  G  L  R  Q   : G  W  W  F  P  G  T  R  A  C  S  L  Q  P  *  G  V  R  F  W  Q  E  E  S  I  P  I  P  *  P   : A  F  L  Y  I  H  R  E  V  K  G  *  A  R  M  E  T  *  F  *  S  G  G  R  S  Y  R  L  L  Q  P  R  F  R  T  R  N  I  Q  E  S  S  *  F  L  Y  R  *  Y  D  S  *  K  E  T  S  S  P  E  L  I  F  L  F  F  I  S  L  V  L  V  S  C  F  F  S  K  K  F  T  S  H  *  W  Q  T  I  *  N  F  P  C  I  L  T  S  L  K  *  N  E  *  Q  L  L  S  F  C  H  Q  H  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12262" stop="12317"/>
                    <exon start="12531" stop="12591"/>
                    <exon start="13025" stop="13246"/>
                    <exon start="13557" stop="13673"/>
                    <exon start="13759" stop="13848"/>
                    <exon start="14194" stop="14373"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GREATEVEPILDALPNLEQYIYCSSAGVYLKTDYLPHFEVDAGDPKSRHKGKLETESLLVSRDVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGMQITQLGHVKDLAKAFVQVLGNEKASKQVFNISGEKYVTFDGLAKACAKAGGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFTSIEKSKAELGWKPDFDLVEGLTDSYNLDFGRGTFRKAADFSTDDMILEKKLVPQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="13758" e_stop="13848"/>
            <exon e_start="14194" e_stop="14527"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.881" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13758" e_stop="13848" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.881">
            <gDNA_intron_boundary i_start="13849" i_stop="14193" i_length="345"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14194" e_stop="14527" e_length="334"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13758" stop="13848"/>
              <exon start="14194" stop="14523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13806" stop="13848"/>
              <exon start="14194" stop="14523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13819" stop="13848"/>
              <exon start="14194" stop="14527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13828" stop="13848"/>
              <exon start="14194" stop="14523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14194" stop="14524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230544" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAG : CATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAACATTT</gDNA_template>
            <first_frame> G  W  W  F  P  G  T  R  A  C  S  L  Q  P  *  G  V  R  F  W  Q  E  E  S  I  P  I  P  *  P   : A  F  L  Y  I  H  R  E  V  K  G  *  A  R  M  E  T  *  F  *  S  G  G  R  S  Y  R  L  L  Q  P  R  F  R  T  R  N  I  Q  E  S  S  *  F  L  Y  R  *  Y  D  S  *  K  E  T  S  S  P  E  L  I  F  L  F  F  I  S  L  V  L  V  S  C  F  F  S  K  K  F  T  S  H  *  W  Q  T  I  *  N  F  P  C  I  L  T  S  L  K  *  N  E  *  Q  L  L  S  F  C  H  Q  H   </first_frame>
            <second_frame>  A  G  G  F  P  E  P  E  L  V  H  Y  N  P  K  E  F  D  F  G  K  K  K  A  F  P  F  R  D  Q  :  H  F  F  T  S  I  E  K  S  K  A  E  L  G  W  K  P  D  F  D  L  V  E  G  L  T  D  S  Y  N  L  D  F  G  R  G  T  F  R  K  A  A  D  F  S  T  D  D  M  I  L  E  K  K  L  V  P  Q  S  *  Y  F  C  F  S  F  H  *  F  W  F  L  A  F  S  P  R  S  S  Q  V  I  S  G  K  L  F  E  I  F  L  V  Y  *  L  H  *  N  E  M  N  D  N  Y  C  H  F  A  I  N  I  </second_frame>
            <third_frame>   L  V  V  S  R  N  P  S  L  F  I  T  T  L  R  S  S  I  L  A  R  R  K  H  S  H  S  V  T  S :   I  S  L  H  P  S  R  S  Q  R  L  S  *  D  G  N  L  I  L  I  W  W  K  V  L  Q  T  L  T  T  *  I  S  D  E  E  H  S  G  K  Q  L  I  S  L  Q  M  I  *  F  L  K  R  N  *  F  P  R  A  N  I  S  V  F  H  F  I  S  F  G  F  L  L  F  L  Q  E  V  H  K  S  L  V  A  N  Y  L  K  F  S  L  Y  I  N  F  T  K  M  K  *  M  T  T  I  V  I  L  P  S  T  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13759" stop="13848"/>
                    <exon start="14194" stop="14373"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFTSIEKSKAELGWKPDFDLVEGLTDSYNLDFGRGTFRKAADFSTDDMILEKKLVPQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="18405" PGL_stop="19329"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18405" e_stop="19329"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="18405" e_stop="19329" e_length="925"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18405" stop="18670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18564" stop="19329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18568" stop="18920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18611" stop="19329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18727" stop="19188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364969" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAAACTTGCACTTTATATATTCTCCCAAAAGCTACTCCTAATTTGTCTCCTATTTTTTCTCAACAAAACAAACTACAACCACCCCTTAATAGTTTACAATCCAAAAACCAAATGCAATTCCCAGCCATTTTCTTCAAAACTCGTTGCATTTTCAATCTCTTCAACCCAATCCTCCTCTCCTTACTCCCAAAAAAACTCATCTCCTTCCTTCCTCCATCTTGGTTCCACCAAAAACGCATCCATTCGCGGTCACCGGCGCCGCCACAGCAGTCGCCGGTTTCCGTTTCCGACGCGGTTGAATCGCATCAGAAGAGAATGGACTCAGACGAACTCCGACGTATCTTCCAAATCTTCGATCGGAACGGCGACGGACGGATAACGAAGAATGAATTAAACAGTTCGTTAGAGAATATGGGGATATTCATACCAGATCCGGAATTAATCCAGATGATCGAGAAAATCGATGTGAATGGAGACGGTTGCGTTGACATAGATGAGTTCGGTTCGCTTTACCAGACCATCATGGATGAACGCGATGAAGAAGAAGATATGCGTGAGGCATTCAATGTGTTCGATCAAAACGGCGACGGATTCATTTGTGTTGAGGAATTGAAATCTGTTCTCGCATCGTTAGGGCTAAAACAGGGACGAACCGTAGAGGATTGTAAACAAATGATTAACAAAGTGGACATTGATGGAGATGGAATGGTTAATTATGATGAGTTTAAGCAGATGATGAGAGGAGGTGGTTTTGCTGCATTGAGTTAGTTTTATTTTTATTTTAATTATTTCGTCTGTTTTTTTACTCACTATTTTTATTATTAAAATAGACAAGGAAAGAATAACTTTTATTTTTATTTTTTTAATGTCATAGGCGGTGACATGTAAATAAATTGTTACTGCTATTATTTTATTTTTTCAATT</gDNA_template>
            <first_frame> P  N  L  H  F  I  Y  S  P  K  S  Y  S  *  F  V  S  Y  F  F  S  T  K  Q  T  T  T  T  P  *  *  F  T  I  Q  K  P  N  A  I  P  S  H  F  L  Q  N  S  L  H  F  Q  S  L  Q  P  N  P  P  L  L  T  P  K  K  T  H  L  L  P  S  S  I  L  V  P  P  K  T  H  P  F  A  V  T  G  A  A  T  A  V  A  G  F  R  F  R  R  G  *  I  A  S  E  E  N  G  L  R  R  T  P  T  Y  L  P  N  L  R  S  E  R  R  R  T  D  N  E  E  *  I  K  Q  F  V  R  E  Y  G  D  I  H  T  R  S  G  I  N  P  D  D  R  E  N  R  C  E  W  R  R  L  R  *  H  R  *  V  R  F  A  L  P  D  H  H  G  *  T  R  *  R  R  R  Y  A  *  G  I  Q  C  V  R  S  K  R  R  R  I  H  L  C  *  G  I  E  I  C  S  R  I  V  R  A  K  T  G  T  N  R  R  G  L  *  T  N  D  *  Q  S  G  H  *  W  R  W  N  G  *  L  *  *  V  *  A  D  D  E  R  R  W  F  C  C  I  E  L  V  L  F  L  F  *  L  F  R  L  F  F  Y  S  L  F  L  L  L  K  *  T  R  K  E  *  L  L  F  L  F  F  *  C  H  R  R  *  H  V  N  K  L  L  L  L  L  F  Y  F  F  N  </first_frame>
            <second_frame>  Q  T  C  T  L  Y  I  L  P  K  A  T  P  N  L  S  P  I  F  S  Q  Q  N  K  L  Q  P  P  L  N  S  L  Q  S  K  N  Q  M  Q  F  P  A  I  F  F  K  T  R  C  I  F  N  L  F  N  P  I  L  L  S  L  L  P  K  K  L  I  S  F  L  P  P  S  W  F  H  Q  K  R  I  H  S  R  S  P  A  P  P  Q  Q  S  P  V  S  V  S  D  A  V  E  S  H  Q  K  R  M  D  S  D  E  L  R  R  I  F  Q  I  F  D  R  N  G  D  G  R  I  T  K  N  E  L  N  S  S  L  E  N  M  G  I  F  I  P  D  P  E  L  I  Q  M  I  E  K  I  D  V  N  G  D  G  C  V  D  I  D  E  F  G  S  L  Y  Q  T  I  M  D  E  R  D  E  E  E  D  M  R  E  A  F  N  V  F  D  Q  N  G  D  G  F  I  C  V  E  E  L  K  S  V  L  A  S  L  G  L  K  Q  G  R  T  V  E  D  C  K  Q  M  I  N  K  V  D  I  D  G  D  G  M  V  N  Y  D  E  F  K  Q  M  M  R  G  G  G  F  A  A  L  S  *  F  Y  F  Y  F  N  Y  F  V  C  F  F  T  H  Y  F  Y  Y  *  N  R  Q  G  K  N  N  F  Y  F  Y  F  F  N  V  I  G  G  D  M  *  I  N  C  Y  C  Y  Y  F  I  F  S  I </second_frame>
            <third_frame>   K  L  A  L  Y  I  F  S  Q  K  L  L  L  I  C  L  L  F  F  L  N  K  T  N  Y  N  H  P  L  I  V  Y  N  P  K  T  K  C  N  S  Q  P  F  S  S  K  L  V  A  F  S  I  S  S  T  Q  S  S  S  P  Y  S  Q  K  N  S  S  P  S  F  L  H  L  G  S  T  K  N  A  S  I  R  G  H  R  R  R  H  S  S  R  R  F  P  F  P  T  R  L  N  R  I  R  R  E  W  T  Q  T  N  S  D  V  S  S  K  S  S  I  G  T  A  T  D  G  *  R  R  M  N  *  T  V  R  *  R  I  W  G  Y  S  Y  Q  I  R  N  *  S  R  *  S  R  K  S  M  *  M  E  T  V  A  L  T  *  M  S  S  V  R  F  T  R  P  S  W  M  N  A  M  K  K  K  I  C  V  R  H  S  M  C  S  I  K  T  A  T  D  S  F  V  L  R  N  *  N  L  F  S  H  R  *  G  *  N  R  D  E  P  *  R  I  V  N  K  *  L  T  K  W  T  L  M  E  M  E  W  L  I  M  M  S  L  S  R  *  *  E  E  V  V  L  L  H  *  V  S  F  I  F  I  L  I  I  S  S  V  F  L  L  T  I  F  I  I  K  I  D  K  E  R  I  T  F  I  F  I  F  L  M  S  *  A  V  T  C  K  *  I  V  T  A  I  I  L  F  F  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18406" stop="19173"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTCTLYILPKATPNLSPIFSQQNKLQPPLNSLQSKNQMQFPAIFFKTRCIFNLFNPILLSLLPKKLISFLPPSWFHQKRIHSRSPAPPQQSPVSVSDAVESHQKRMDSDELRRIFQIFDRNGDGRITKNELNSSLENMGIFIPDPELIQMIEKIDVNGDGCVDIDEFGSLYQTIMDERDEEEDMREAFNVFDQNGDGFICVEELKSVLASLGLKQGRTVEDCKQMINKVDIDGDGMVNYDEFKQMMRGGGFAALS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="21445" PGL_stop="23683"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21460" e_stop="21588"/>
            <exon e_start="22446" e_stop="23028"/>
            <exon e_start="23163" e_stop="23592"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.573" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.970"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21460" e_stop="21588" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.573" acc_prob="0.943">
            <gDNA_intron_boundary i_start="21589" i_stop="22445" i_length="857"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="22446" e_stop="23028" e_length="583"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23029" i_stop="23162" i_length="134"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="23163" e_stop="23592" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21460" stop="21588"/>
              <exon start="22446" stop="22599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22503" stop="23028"/>
              <exon start="23163" stop="23176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22558" stop="23028"/>
              <exon start="23163" stop="23302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22558" stop="23028"/>
              <exon start="23163" stop="23296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22558" stop="23028"/>
              <exon start="23163" stop="23268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22936" stop="23028"/>
              <exon start="23163" stop="23592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343461" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAACTCCTACTAGATCAGTGACCTTACGGCGTCGTTTGTTCATCTTCTCCGCAATTATTCTATTCTTCATTCGGATTCAGTTTCTTTGGAGAATTTACTTGGGTTTTTTGCTTAGTGTTAATTCCCTG : GTTAGAAAAAAACCGCTTTCAATCACAGCATCTTGACCTCTGAACTATGGACTCAACCGTGGAAAATGTAGCTTATTCTCCCAAAAATGTATTCATTCTATCTGGGCAAAGCAACATGGCTGGTCGTGGTGGAGTAGAAAAGCATCACTGGGATGGCGTTGTACCAAACGAGTGCCATCCAGATGCTTCTAGAATTTTCCGTCTTAGTGCACACCTCCATTATGAGGTGGCACGTGAGCCACTCCACCATGACATTGATGCGAAGAAGACATGTGGTGTTGGACCTGGAATGTCATTTGCAAATGCAATCAAGGACCGAGTGGAAGCTATTGGGTTAGTGCCATGTGCTGTAGGAGGAACTGCGATAAAGGAGTGGGCACACGGGCAACACTTGTATGTGAATATGATCAACAGAGCTAGAGCTGCCATGAGTCATGGAGGAGAAATCAAGGCATTGCTTTGGTATCAAGGAGAGAGTGATACATTATCTCAGCATTGCGTCGATACATATAAGGCTAATATGGAGAAGTTAATACATGATGTTCGTGCTGATTTGCATCTGCCATCTCTGCCAATTATTCAG : GTTGCAATTGCATCAGGAGATGAGAAGTATATTGAAAAGATTCGAGAAGCACAAAAGGCAATTGATCTTCCAAATGTTGTATGTGTTGATGCCATGGGATTGCAGCTAAAGGAAGATAATCTTCATTTAACTACAGAGGCTCAAGTTAAATTAGGCCAAATGTTGGCTGATGCATACCTTACCCATTTTGCACCACAAGAACCTTGTGTTGCTACATCTTGAGAAATTTGATGTATTATGTGTGTGTAAACTAAAAATTATTTAATCCTGGCTCATGAACATAACGTGAGTGGCTGAGTGCTCATATAAGTATGTTATTACTTTGAAGTAAGTTTACTCATTTTCTGTATCTCTTCATTTCTTTACTTTAAAATGAGTATTTCCTTGTCTGCATTTCTTCATTTAGCTTTCAAATATTTTCAATTGTACA</gDNA_template>
            <first_frame> T  T  P  T  R  S  V  T  L  R  R  R  L  F  I  F  S  A  I  I  L  F  F  I  R  I  Q  F  L  W  R  I  Y  L  G  F  L  L  S  V  N  S  L  :  V  R  K  K  P  L  S  I  T  A  S  *  P  L  N  Y  G  L  N  R  G  K  C  S  L  F  S  Q  K  C  I  H  S  I  W  A  K  Q  H  G  W  S  W  W  S  R  K  A  S  L  G  W  R  C  T  K  R  V  P  S  R  C  F  *  N  F  P  S  *  C  T  P  P  L  *  G  G  T  *  A  T  P  P  *  H  *  C  E  E  D  M  W  C  W  T  W  N  V  I  C  K  C  N  Q  G  P  S  G  S  Y  W  V  S  A  M  C  C  R  R  N  C  D  K  G  V  G  T  R  A  T  L  V  C  E  Y  D  Q  Q  S  *  S  C  H  E  S  W  R  R  N  Q  G  I  A  L  V  S  R  R  E  *  Y  I  I  S  A  L  R  R  Y  I  *  G  *  Y  G  E  V  N  T  *  C  S  C  *  F  A  S  A  I  S  A  N  Y  S   : G  C  N  C  I  R  R  *  E  V  Y  *  K  D  S  R  S  T  K  G  N  *  S  S  K  C  C  M  C  *  C  H  G  I  A  A  K  G  R  *  S  S  F  N  Y  R  G  S  S  *  I  R  P  N  V  G  *  C  I  P  Y  P  F  C  T  T  R  T  L  C  C  Y  I  L  R  N  L  M  Y  Y  V  C  V  N  *  K  L  F  N  P  G  S  *  T  *  R  E  W  L  S  A  H  I  S  M  L  L  L  *  S  K  F  T  H  F  L  Y  L  F  I  S  L  L  *  N  E  Y  F  L  V  C  I  S  S  F  S  F  Q  I  F  S  I  V   </first_frame>
            <second_frame>  Q  L  L  L  D  Q  *  P  Y  G  V  V  C  S  S  S  P  Q  L  F  Y  S  S  F  G  F  S  F  F  G  E  F  T  W  V  F  C  L  V  L  I  P  W :   L  E  K  N  R  F  Q  S  Q  H  L  D  L  *  T  M  D  S  T  V  E  N  V  A  Y  S  P  K  N  V  F  I  L  S  G  Q  S  N  M  A  G  R  G  G  V  E  K  H  H  W  D  G  V  V  P  N  E  C  H  P  D  A  S  R  I  F  R  L  S  A  H  L  H  Y  E  V  A  R  E  P  L  H  H  D  I  D  A  K  K  T  C  G  V  G  P  G  M  S  F  A  N  A  I  K  D  R  V  E  A  I  G  L  V  P  C  A  V  G  G  T  A  I  K  E  W  A  H  G  Q  H  L  Y  V  N  M  I  N  R  A  R  A  A  M  S  H  G  G  E  I  K  A  L  L  W  Y  Q  G  E  S  D  T  L  S  Q  H  C  V  D  T  Y  K  A  N  M  E  K  L  I  H  D  V  R  A  D  L  H  L  P  S  L  P  I  I  Q  :  V  A  I  A  S  G  D  E  K  Y  I  E  K  I  R  E  A  Q  K  A  I  D  L  P  N  V  V  C  V  D  A  M  G  L  Q  L  K  E  D  N  L  H  L  T  T  E  A  Q  V  K  L  G  Q  M  L  A  D  A  Y  L  T  H  F  A  P  Q  E  P  C  V  A  T  S  *  E  I  *  C  I  M  C  V  *  T  K  N  Y  L  I  L  A  H  E  H  N  V  S  G  *  V  L  I  *  V  C  Y  Y  F  E  V  S  L  L  I  F  C  I  S  S  F  L  Y  F  K  M  S  I  S  L  S  A  F  L  H  L  A  F  K  Y  F  Q  L  Y  </second_frame>
            <third_frame>   N  S  Y  *  I  S  D  L  T  A  S  F  V  H  L  L  R  N  Y  S  I  L  H  S  D  S  V  S  L  E  N  L  L  G  F  F  A  *  C  *  F  P   : G  *  K  K  T  A  F  N  H  S  I  L  T  S  E  L  W  T  Q  P  W  K  M  *  L  I  L  P  K  M  Y  S  F  Y  L  G  K  A  T  W  L  V  V  V  E  *  K  S  I  T  G  M  A  L  Y  Q  T  S  A  I  Q  M  L  L  E  F  S  V  L  V  H  T  S  I  M  R  W  H  V  S  H  S  T  M  T  L  M  R  R  R  H  V  V  L  D  L  E  C  H  L  Q  M  Q  S  R  T  E  W  K  L  L  G  *  C  H  V  L  *  E  E  L  R  *  R  S  G  H  T  G  N  T  C  M  *  I  *  S  T  E  L  E  L  P  *  V  M  E  E  K  S  R  H  C  F  G  I  K  E  R  V  I  H  Y  L  S  I  A  S  I  H  I  R  L  I  W  R  S  *  Y  M  M  F  V  L  I  C  I  C  H  L  C  Q  L  F  R :   L  Q  L  H  Q  E  M  R  S  I  L  K  R  F  E  K  H  K  R  Q  L  I  F  Q  M  L  Y  V  L  M  P  W  D  C  S  *  R  K  I  I  F  I  *  L  Q  R  L  K  L  N  *  A  K  C  W  L  M  H  T  L  P  I  L  H  H  K  N  L  V  L  L  H  L  E  K  F  D  V  L  C  V  C  K  L  K  I  I  *  S  W  L  M  N  I  T  *  V  A  E  C  S  Y  K  Y  V  I  T  L  K  *  V  Y  S  F  S  V  S  L  H  F  F  T  L  K  *  V  F  P  C  L  H  F  F  I  *  L  S  N  I  F  N  C  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22489" stop="23028"/>
                    <exon start="23163" stop="23384"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMDSTVENVAYSPKNVFILSGQSNMAGRGGVEKHHWDGVVPNECHPDASRIFRLSAHLHYEVAREPLHHDIDAKKTCGVGPGMSFANAIKDRVEAIGLVPCAVGGTAIKEWAHGQHLYVNMINRARAAMSHGGEIKALLWYQGESDTLSQHCVDTYKANMEKLIHDVRADLHLPSLPIIQVAIASGDEKYIEKIREAQKAIDLPNVVCVDAMGLQLKEDNLHLTTEAQVKLGQMLADAYLTHFAPQEPCVATS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="21445" e_stop="22165"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="21445" e_stop="22165" e_length="721"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21445" stop="22072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21456" stop="22165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21458" stop="21992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21458" stop="21938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305664" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTTTCGGAACCAAACAACTCCTACTAGATCAGTGACCTTACGGCGTCGTTTGTTCATCTTCTCCGCAATTATTCTATTCTTCATTCGGATTCAGTTTCTTTGGAGAATTTACTTGGGTTTTTTGCTTAGTGTTAATTCCCTGGTAATTCCTCTCCCTTGCCGATATAGTTCAATTTTTTTTATGTGGTGTTCCGTTGATTGGGCCTCAGTTTGAATTTTTTTTAATTTTAACTTACATTAGCATTAACAGCTATAATTTGCTGTGTTAATTAATCGTACATTGTTTGAATCTCATTAATTATGTGTAATTTAGTGGGTAAGTTGATGTTAACGGGGAAAAGATTATATTCCCGTAATATTTAAGGTAATAATCTAACAATTGATGGTTTATGAGCTGTTTAATGGCTTTGTTAAATGTATTTGATGCTTTGTAGAATTTAATCTCTCAGTAATAATATAACAATTGACTTCTGTGTTTTTTTTTTCTTTATTGACGTTGCGATTTGTATAATTTTCGATCTAGGTGAAATTCTATAGGTTTTGTGTTAAAATACAAACAATGTTTGTCTAGTTTTGGATATGAAATGCTAAGATGGAATTAGGAAGGGGAAGAGGTTTATTTTTGGAATTAGTGAAGGTATGATTGGATTAATCAGCATCGGAGTTTAGATGGAGTAACATGGTCAGTGATGATTCATATAGCGAGACGTAGTTATTTA</gDNA_template>
            <first_frame> L  F  R  N  Q  T  T  P  T  R  S  V  T  L  R  R  R  L  F  I  F  S  A  I  I  L  F  F  I  R  I  Q  F  L  W  R  I  Y  L  G  F  L  L  S  V  N  S  L  V  I  P  L  P  C  R  Y  S  S  I  F  F  M  W  C  S  V  D  W  A  S  V  *  I  F  F  N  F  N  L  H  *  H  *  Q  L  *  F  A  V  L  I  N  R  T  L  F  E  S  H  *  L  C  V  I  *  W  V  S  *  C  *  R  G  K  D  Y  I  P  V  I  F  K  V  I  I  *  Q  L  M  V  Y  E  L  F  N  G  F  V  K  C  I  *  C  F  V  E  F  N  L  S  V  I  I  *  Q  L  T  S  V  F  F  F  S  L  L  T  L  R  F  V  *  F  S  I  *  V  K  F  Y  R  F  C  V  K  I  Q  T  M  F  V  *  F  W  I  *  N  A  K  M  E  L  G  R  G  R  G  L  F  L  E  L  V  K  V  *  L  D  *  S  A  S  E  F  R  W  S  N  M  V  S  D  D  S  Y  S  E  T  *  L  F  </first_frame>
            <second_frame>  C  F  G  T  K  Q  L  L  L  D  Q  *  P  Y  G  V  V  C  S  S  S  P  Q  L  F  Y  S  S  F  G  F  S  F  F  G  E  F  T  W  V  F  C  L  V  L  I  P  W  *  F  L  S  L  A  D  I  V  Q  F  F  L  C  G  V  P  L  I  G  P  Q  F  E  F  F  L  I  L  T  Y  I  S  I  N  S  Y  N  L  L  C  *  L  I  V  H  C  L  N  L  I  N  Y  V  *  F  S  G  *  V  D  V  N  G  E  K  I  I  F  P  *  Y  L  R  *  *  S  N  N  *  W  F  M  S  C  L  M  A  L  L  N  V  F  D  A  L  *  N  L  I  S  Q  *  *  Y  N  N  *  L  L  C  F  F  F  L  Y  *  R  C  D  L  Y  N  F  R  S  R  *  N  S  I  G  F  V  L  K  Y  K  Q  C  L  S  S  F  G  Y  E  M  L  R  W  N  *  E  G  E  E  V  Y  F  W  N  *  *  R  Y  D  W  I  N  Q  H  R  S  L  D  G  V  T  W  S  V  M  I  H  I  A  R  R  S  Y  L </second_frame>
            <third_frame>   V  S  E  P  N  N  S  Y  *  I  S  D  L  T  A  S  F  V  H  L  L  R  N  Y  S  I  L  H  S  D  S  V  S  L  E  N  L  L  G  F  F  A  *  C  *  F  P  G  N  S  S  P  L  P  I  *  F  N  F  F  Y  V  V  F  R  *  L  G  L  S  L  N  F  F  *  F  *  L  T  L  A  L  T  A  I  I  C  C  V  N  *  S  Y  I  V  *  I  S  L  I  M  C  N  L  V  G  K  L  M  L  T  G  K  R  L  Y  S  R  N  I  *  G  N  N  L  T  I  D  G  L  *  A  V  *  W  L  C  *  M  Y  L  M  L  C  R  I  *  S  L  S  N  N  I  T  I  D  F  C  V  F  F  F  F  I  D  V  A  I  C  I  I  F  D  L  G  E  I  L  *  V  L  C  *  N  T  N  N  V  C  L  V  L  D  M  K  C  *  D  G  I  R  K  G  K  R  F  I  F  G  I  S  E  G  M  I  G  L  I  S  I  G  V  *  M  E  *  H  G  Q  *  *  F  I  *  R  D  V  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21445" stop="21660"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFRNQTTPTRSVTLRRRLFIFSAIILFFIRIQFLWRIYLGFLLSVNSLVIPLPCRYSSIFFMWCSVDWASV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="22996" e_stop="23683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="22996" e_stop="23683" e_length="688"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22996" stop="23683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373613" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTTGCATCTGCCATCTCTGCCAATTATTCAGGTTAGCTAACACAGTTTGCTTCAAGCCTGATGTGAAACTTTTCAAGGATTTTGGCAATTGTGGTTAGGTATTTCGTGGATCAAAGTAGTTGAACATTTTCACATGTTCTTTAACCATATTGCATTGTCGTATAGGTTGCAATTGCATCAGGAGATGAGAAGTATATTGAAAAGATTCGAGAAGCACAAAAGGCAATTGATCTTCCAAATGTTGTATGTGTTGATGCCATGGGATTGCAGCTAAAGGAAGATAATCTTCATTTAACTACAGAGGCTCAAGTTAAATTAGGCCAAATGTTGGCTGATGCATACCTTACCCATTTTGCACCACAAGAACCTTGTGTTGCTACATCTTGAGAAATTTGATGTATTATGTGTGTGTAAACTAAAAATTATTTAATCCTGGCTCATGAACATAACGTGAGTGGCTGAGTGCTCATATAAGTATGTTATTACTTTGAAGTAAGTTTACTCATTTTCTGTATCTCTTCATTTCTTTACTTTAAAATGAGTATTTCCTTGTCTGCATTTCTTCATTTAGCTTTCAAATATTTTCAATTGTACAATTATTGTGACATATAATACTTATATAGTTTTCAAATATGCAAATTTAATTTAAAAAAACTTTAAAGATAGCAAATTGGGCAACAACTTTG</gDNA_template>
            <first_frame> D  L  H  L  P  S  L  P  I  I  Q  V  S  *  H  S  L  L  Q  A  *  C  E  T  F  Q  G  F  W  Q  L  W  L  G  I  S  W  I  K  V  V  E  H  F  H  M  F  F  N  H  I  A  L  S  Y  R  L  Q  L  H  Q  E  M  R  S  I  L  K  R  F  E  K  H  K  R  Q  L  I  F  Q  M  L  Y  V  L  M  P  W  D  C  S  *  R  K  I  I  F  I  *  L  Q  R  L  K  L  N  *  A  K  C  W  L  M  H  T  L  P  I  L  H  H  K  N  L  V  L  L  H  L  E  K  F  D  V  L  C  V  C  K  L  K  I  I  *  S  W  L  M  N  I  T  *  V  A  E  C  S  Y  K  Y  V  I  T  L  K  *  V  Y  S  F  S  V  S  L  H  F  F  T  L  K  *  V  F  P  C  L  H  F  F  I  *  L  S  N  I  F  N  C  T  I  I  V  T  Y  N  T  Y  I  V  F  K  Y  A  N  L  I  *  K  N  F  K  D  S  K  L  G  N  N  F  </first_frame>
            <second_frame>  I  C  I  C  H  L  C  Q  L  F  R  L  A  N  T  V  C  F  K  P  D  V  K  L  F  K  D  F  G  N  C  G  *  V  F  R  G  S  K  *  L  N  I  F  T  C  S  L  T  I  L  H  C  R  I  G  C  N  C  I  R  R  *  E  V  Y  *  K  D  S  R  S  T  K  G  N  *  S  S  K  C  C  M  C  *  C  H  G  I  A  A  K  G  R  *  S  S  F  N  Y  R  G  S  S  *  I  R  P  N  V  G  *  C  I  P  Y  P  F  C  T  T  R  T  L  C  C  Y  I  L  R  N  L  M  Y  Y  V  C  V  N  *  K  L  F  N  P  G  S  *  T  *  R  E  W  L  S  A  H  I  S  M  L  L  L  *  S  K  F  T  H  F  L  Y  L  F  I  S  L  L  *  N  E  Y  F  L  V  C  I  S  S  F  S  F  Q  I  F  S  I  V  Q  L  L  *  H  I  I  L  I  *  F  S  N  M  Q  I  *  F  K  K  T  L  K  I  A  N  W  A  T  T  L </second_frame>
            <third_frame>   F  A  S  A  I  S  A  N  Y  S  G  *  L  T  Q  F  A  S  S  L  M  *  N  F  S  R  I  L  A  I  V  V  R  Y  F  V  D  Q  S  S  *  T  F  S  H  V  L  *  P  Y  C  I  V  V  *  V  A  I  A  S  G  D  E  K  Y  I  E  K  I  R  E  A  Q  K  A  I  D  L  P  N  V  V  C  V  D  A  M  G  L  Q  L  K  E  D  N  L  H  L  T  T  E  A  Q  V  K  L  G  Q  M  L  A  D  A  Y  L  T  H  F  A  P  Q  E  P  C  V  A  T  S  *  E  I  *  C  I  M  C  V  *  T  K  N  Y  L  I  L  A  H  E  H  N  V  S  G  *  V  L  I  *  V  C  Y  Y  F  E  V  S  L  L  I  F  C  I  S  S  F  L  Y  F  K  M  S  I  S  L  S  A  F  L  H  L  A  F  K  Y  F  Q  L  Y  N  Y  C  D  I  *  Y  L  Y  S  F  Q  I  C  K  F  N  L  K  K  L  *  R  *  Q  I  G  Q  Q  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23163" stop="23384"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAIASGDEKYIEKIREAQKAIDLPNVVCVDAMGLQLKEDNLHLTTEAQVKLGQMLADAYLTHFAPQEPCVATS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23059" stop="23271"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CETFQGFWQLWLGISWIKVVEHFHMFFNHIALSYRLQLHQEMRSILKRFEKHKRQLIFQMLYVLMPWDCS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="26306" PGL_stop="23872"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26306" e_stop="25874"/>
            <exon e_start="25671" e_stop="25544"/>
            <exon e_start="24388" e_stop="23872"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.825" acc_prob="0.942" e_score="0.991"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="26306" e_stop="25874" e_length="433"/>
          </exon>
          <intron i_serial="1" don_prob="0.825" acc_prob="0.942">
            <gDNA_intron_boundary i_start="25873" i_stop="25672" i_length="202"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25671" e_stop="25544" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="25543" i_stop="24389" i_length="1155"/>
          </intron>
          <exon e_serial="3" e_score="0.975">
            <gDNA_exon_boundary e_start="24388" e_stop="23872" e_length="517"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26306" stop="25874"/>
              <exon start="25671" stop="25544"/>
              <exon start="24388" stop="24224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26304" stop="25874"/>
              <exon start="25671" stop="25544"/>
              <exon start="24388" stop="24350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25544"/>
              <exon start="24388" stop="23872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213725" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAAGAGCCGTCACACCAGTTTCGGATCCTCCAAAAATGTGTTATATTTGAAGGAGATCTGACTTGGGGTGAGGTGATATTTTTAAAGGATCTGGGCAACATAGCCTCCAATTCAGAAGTTATAATCTGAGAGATGCTGTTGCCTCAGAAATACAAAATTAATCTTTGTAGGCATGCTTCCTTGTGACACATCAAATAATGAACAATCTGTATGAGAAAAGCATTTTTCATATATAGTTGATGATGGTTTTTCTATCTGTTTTTATGAATATCTACAGGTTGTTTCTGCTTATGTTTTGCAACATGTAACAACTTTATCTTATAGGTGCTTCATCTGTGATGGTTGCAAGAGGAGCCATGTGGAATGCTTCTATATTCTCTTCTGAGGGAAAAACACCATGGGAAGATGTCAAAAGAGAGTATGTGAGAAAG : AGTATATTGTGGGATAATGATATCAAAAGTACAAAGCACACCCTGAAGGAAATGATTACACACTATTCTTCCCTTGGGAGCCCAGAGGGGCTGGCAGTAATTAAATCAGATACCTTTGCAGATGTAGC : GAAACTTTATGGAGAAGAGGAATACTATGAATATGTCTCAGAAAGCCGGAGGAAGCAGCAGATGAAATAAGATAAGTAGTTCACCCTCACTAATCATACAAGTCAATACACCAAGGTGTCGATTAAATTGGACTACCGTTATAATTTATAAAGCAAGAGATAGAGGTGGACTTTGCACATGAGGTTGTTAATGAGTTCTGACTTCCTTCCCGTGACGCGACTATACCCAACTGCTATCCCTTGTTTGAGTTTGAAGTAACATTCCACAACCGCTGAACGAATCCATCAGTTTGAACAATATTCATTGTAGGCTGTACACTAAATTGAACTTAGTGGGTTTACCTAACCTGCATAAACCAACACGATAGCTATGTATCCGTTGGATCATAAGGGGGTACAATTGAAGTTTTTGCTTTATTCATGCTGCAGACATCATTTGCAAATTTAATATATTTATGTTTAGTGATATGACTGAAATCATGTACAACTAAACAAATTTGAAGTTAGTATAAAGTCT</gDNA_template>
            <first_frame> Q  K  S  R  H  T  S  F  G  S  S  K  N  V  L  Y  L  K  E  I  *  L  G  V  R  *  Y  F  *  R  I  W  A  T  *  P  P  I  Q  K  L  *  S  E  R  C  C  C  L  R  N  T  K  L  I  F  V  G  M  L  P  C  D  T  S  N  N  E  Q  S  V  *  E  K  H  F  S  Y  I  V  D  D  G  F  S  I  C  F  Y  E  Y  L  Q  V  V  S  A  Y  V  L  Q  H  V  T  T  L  S  Y  R  C  F  I  C  D  G  C  K  R  S  H  V  E  C  F  Y  I  L  F  *  G  K  N  T  M  G  R  C  Q  K  R  V  C  E  K   : E  Y  I  V  G  *  *  Y  Q  K  Y  K  A  H  P  E  G  N  D  Y  T  L  F  F  P  W  E  P  R  G  A  G  S  N  *  I  R  Y  L  C  R  C  S  :  E  T  L  W  R  R  G  I  L  *  I  C  L  R  K  P  E  E  A  A  D  E  I  R  *  V  V  H  P  H  *  S  Y  K  S  I  H  Q  G  V  D  *  I  G  L  P  L  *  F  I  K  Q  E  I  E  V  D  F  A  H  E  V  V  N  E  F  *  L  P  S  R  D  A  T  I  P  N  C  Y  P  L  F  E  F  E  V  T  F  H  N  R  *  T  N  P  S  V  *  T  I  F  I  V  G  C  T  L  N  *  T  *  W  V  Y  L  T  C  I  N  Q  H  D  S  Y  V  S  V  G  S  *  G  G  T  I  E  V  F  A  L  F  M  L  Q  T  S  F  A  N  L  I  Y  L  C  L  V  I  *  L  K  S  C  T  T  K  Q  I  *  S  *  Y  K  V  </first_frame>
            <second_frame>  R  R  A  V  T  P  V  S  D  P  P  K  M  C  Y  I  *  R  R  S  D  L  G  *  G  D  I  F  K  G  S  G  Q  H  S  L  Q  F  R  S  Y  N  L  R  D  A  V  A  S  E  I  Q  N  *  S  L  *  A  C  F  L  V  T  H  Q  I  M  N  N  L  Y  E  K  S  I  F  H  I  *  L  M  M  V  F  L  S  V  F  M  N  I  Y  R  L  F  L  L  M  F  C  N  M  *  Q  L  Y  L  I  G  A  S  S  V  M  V  A  R  G  A  M  W  N  A  S  I  F  S  S  E  G  K  T  P  W  E  D  V  K  R  E  Y  V  R  K  :  S  I  L  W  D  N  D  I  K  S  T  K  H  T  L  K  E  M  I  T  H  Y  S  S  L  G  S  P  E  G  L  A  V  I  K  S  D  T  F  A  D  V  A :   K  L  Y  G  E  E  E  Y  Y  E  Y  V  S  E  S  R  R  K  Q  Q  M  K  *  D  K  *  F  T  L  T  N  H  T  S  Q  Y  T  K  V  S  I  K  L  D  Y  R  Y  N  L  *  S  K  R  *  R  W  T  L  H  M  R  L  L  M  S  S  D  F  L  P  V  T  R  L  Y  P  T  A  I  P  C  L  S  L  K  *  H  S  T  T  A  E  R  I  H  Q  F  E  Q  Y  S  L  *  A  V  H  *  I  E  L  S  G  F  T  *  P  A  *  T  N  T  I  A  M  Y  P  L  D  H  K  G  V  Q  L  K  F  L  L  Y  S  C  C  R  H  H  L  Q  I  *  Y  I  Y  V  *  *  Y  D  *  N  H  V  Q  L  N  K  F  E  V  S  I  K  S </second_frame>
            <third_frame>   E  E  P  S  H  Q  F  R  I  L  Q  K  C  V  I  F  E  G  D  L  T  W  G  E  V  I  F  L  K  D  L  G  N  I  A  S  N  S  E  V  I  I  *  E  M  L  L  P  Q  K  Y  K  I  N  L  C  R  H  A  S  L  *  H  I  K  *  *  T  I  C  M  R  K  A  F  F  I  Y  S  *  *  W  F  F  Y  L  F  L  *  I  S  T  G  C  F  C  L  C  F  A  T  C  N  N  F  I  L  *  V  L  H  L  *  W  L  Q  E  E  P  C  G  M  L  L  Y  S  L  L  R  E  K  H  H  G  K  M  S  K  E  S  M  *  E  R :   V  Y  C  G  I  M  I  S  K  V  Q  S  T  P  *  R  K  *  L  H  T  I  L  P  L  G  A  Q  R  G  W  Q  *  L  N  Q  I  P  L  Q  M  *   : R  N  F  M  E  K  R  N  T  M  N  M  S  Q  K  A  G  G  S  S  R  *  N  K  I  S  S  S  P  S  L  I  I  Q  V  N  T  P  R  C  R  L  N  W  T  T  V  I  I  Y  K  A  R  D  R  G  G  L  C  T  *  G  C  *  *  V  L  T  S  F  P  *  R  D  Y  T  Q  L  L  S  L  V  *  V  *  S  N  I  P  Q  P  L  N  E  S  I  S  L  N  N  I  H  C  R  L  Y  T  K  L  N  L  V  G  L  P  N  L  H  K  P  T  R  *  L  C  I  R  W  I  I  R  G  Y  N  *  S  F  C  F  I  H  A  A  D  I  I  C  K  F  N  I  F  M  F  S  D  M  T  E  I  M  Y  N  *  T  N  L  K  L  V  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25996" stop="25874"/>
                    <exon start="25671" stop="25544"/>
                    <exon start="24388" stop="24319"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLYLIGASSVMVARGAMWNASIFSSEGKTPWEDVKREYVRKSILWDNDIKSTKHTLKEMITHYSSLGSPEGLAVIKSDTFADVAKLYGEEEYYEYVSESRRKQQMK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25953" e_stop="25874"/>
            <exon e_start="25671" e_stop="24684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.825" acc_prob="0.942" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="25953" e_stop="25874" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.825" acc_prob="0.942">
            <gDNA_intron_boundary i_start="25873" i_stop="25672" i_length="202"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25671" e_stop="24684" e_length="988"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25953" stop="25874"/>
              <exon start="25671" stop="25129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25198" stop="24684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCCATGTGGAATGCTTCTATATTCTCTTCTGAGGGAAAAACACCATGGGAAGATGTCAAAAGAGAGTATGTGAGAAAG : AGTATATTGTGGGATAATGATATCAAAAGTACAAAGCACACCCTGAAGGAAATGATTACACACTATTCTTCCCTTGGGAGCCCAGAGGGGCTGGCAGTAATTAAATCAGATACCTTTGCAGATGTAGCGTAAGTTTTTCTATCTGCTGCCGTTTACTTCCACCTGTGGTTACATGTGTTGGGATCAAATTTAGTTGCTGTTCAGTTAGTTTCCAAATTAAGTTGTTCATGTTCTGATAATGTATGACATCTGCTTCACCTCATCCCCTTGCTTCTTTTTTTACATAATTGCGTAGTCTGCTCATTCTAAAAGCTACTCAAAAGTTTGACTCAGTAAAAAGGAGGATTTATATTGTGAAAAGGTGCATGAGGTTCTTAATCTTCTCTTTCATCCTTGTACCATTATTCACTTTGAGATTTGTCCAGCATTGGCAGAGTCCATAAGTCCACAACCTTTACTATTATCATTGTTACAACTCTTCACAAATAAGCTGTCGATGGATATAACTAGCCAAGTAACTATGATTGGACTAATTACGTGTGAAATATGCTATATTTGAGAGGAGGTAACGAGAACAGGGAGAGAAGAACATTATTTCTCTCATTTGGCAAAAAAAGTTACTTATTGGAAGGAGTAACACCTTTTCCAACTCCTCTGTAAGTGGTCGAAGATGAGTTTGAGAGGGCATTTGGAAGATTTTATTCCCAAAGGTTTCTTCCTTGGACAGACAGCTACCTGTGAAGCAGTACTTATCCAAGATGATCTTCCCAATAAGAAGAGCATGAAGATTGTGGTTCTAATAGATAGTTCATGTGTGAATGGTATGAAAATTTTGCTAATCATCTTTCTTTGCTAAATGGGGTGGTGGAACATGTTCCTTTTCGTTTGGGATAGTGTATTACTGATGTCAGTGATGTGAGCATTTATTTGTATGGAGGGGTTATACTGTATGTACCACTGGTTAAGAATTTTGCACACTTCTCGCATG</gDNA_template>
            <first_frame> E  P  C  G  M  L  L  Y  S  L  L  R  E  K  H  H  G  K  M  S  K  E  S  M  *  E  R :   V  Y  C  G  I  M  I  S  K  V  Q  S  T  P  *  R  K  *  L  H  T  I  L  P  L  G  A  Q  R  G  W  Q  *  L  N  Q  I  P  L  Q  M  *  R  K  F  F  Y  L  L  P  F  T  S  T  C  G  Y  M  C  W  D  Q  I  *  L  L  F  S  *  F  P  N  *  V  V  H  V  L  I  M  Y  D  I  C  F  T  S  S  P  C  F  F  F  Y  I  I  A  *  S  A  H  S  K  S  Y  S  K  V  *  L  S  K  K  E  D  L  Y  C  E  K  V  H  E  V  L  N  L  L  F  H  P  C  T  I  I  H  F  E  I  C  P  A  L  A  E  S  I  S  P  Q  P  L  L  L  S  L  L  Q  L  F  T  N  K  L  S  M  D  I  T  S  Q  V  T  M  I  G  L  I  T  C  E  I  C  Y  I  *  E  E  V  T  R  T  G  R  E  E  H  Y  F  S  H  L  A  K  K  V  T  Y  W  K  E  *  H  L  F  Q  L  L  C  K  W  S  K  M  S  L  R  G  H  L  E  D  F  I  P  K  G  F  F  L  G  Q  T  A  T  C  E  A  V  L  I  Q  D  D  L  P  N  K  K  S  M  K  I  V  V  L  I  D  S  S  C  V  N  G  M  K  I  L  L  I  I  F  L  C  *  M  G  W  W  N  M  F  L  F  V  W  D  S  V  L  L  M  S  V  M  *  A  F  I  C  M  E  G  L  Y  C  M  Y  H  W  L  R  I  L  H  T  S  R  M </first_frame>
            <second_frame>  S  H  V  E  C  F  Y  I  L  F  *  G  K  N  T  M  G  R  C  Q  K  R  V  C  E  K   : E  Y  I  V  G  *  *  Y  Q  K  Y  K  A  H  P  E  G  N  D  Y  T  L  F  F  P  W  E  P  R  G  A  G  S  N  *  I  R  Y  L  C  R  C  S  V  S  F  S  I  C  C  R  L  L  P  P  V  V  T  C  V  G  I  K  F  S  C  C  S  V  S  F  Q  I  K  L  F  M  F  *  *  C  M  T  S  A  S  P  H  P  L  A  S  F  F  T  *  L  R  S  L  L  I  L  K  A  T  Q  K  F  D  S  V  K  R  R  I  Y  I  V  K  R  C  M  R  F  L  I  F  S  F  I  L  V  P  L  F  T  L  R  F  V  Q  H  W  Q  S  P  *  V  H  N  L  Y  Y  Y  H  C  Y  N  S  S  Q  I  S  C  R  W  I  *  L  A  K  *  L  *  L  D  *  L  R  V  K  Y  A  I  F  E  R  R  *  R  E  Q  G  E  K  N  I  I  S  L  I  W  Q  K  K  L  L  I  G  R  S  N  T  F  S  N  S  S  V  S  G  R  R  *  V  *  E  G  I  W  K  I  L  F  P  K  V  S  S  L  D  R  Q  L  P  V  K  Q  Y  L  S  K  M  I  F  P  I  R  R  A  *  R  L  W  F  *  *  I  V  H  V  *  M  V  *  K  F  C  *  S  S  F  F  A  K  W  G  G  G  T  C  S  F  S  F  G  I  V  Y  Y  *  C  Q  *  C  E  H  L  F  V  W  R  G  Y  T  V  C  T  T  G  *  E  F  C  T  L  L  A   </second_frame>
            <third_frame>   A  M  W  N  A  S  I  F  S  S  E  G  K  T  P  W  E  D  V  K  R  E  Y  V  R  K  :  S  I  L  W  D  N  D  I  K  S  T  K  H  T  L  K  E  M  I  T  H  Y  S  S  L  G  S  P  E  G  L  A  V  I  K  S  D  T  F  A  D  V  A  *  V  F  L  S  A  A  V  Y  F  H  L  W  L  H  V  L  G  S  N  L  V  A  V  Q  L  V  S  K  L  S  C  S  C  S  D  N  V  *  H  L  L  H  L  I  P  L  L  L  F  L  H  N  C  V  V  C  S  F  *  K  L  L  K  S  L  T  Q  *  K  G  G  F  I  L  *  K  G  A  *  G  S  *  S  S  L  S  S  L  Y  H  Y  S  L  *  D  L  S  S  I  G  R  V  H  K  S  T  T  F  T  I  I  I  V  T  T  L  H  K  *  A  V  D  G  Y  N  *  P  S  N  Y  D  W  T  N  Y  V  *  N  M  L  Y  L  R  G  G  N  E  N  R  E  R  R  T  L  F  L  S  F  G  K  K  S  Y  L  L  E  G  V  T  P  F  P  T  P  L  *  V  V  E  D  E  F  E  R  A  F  G  R  F  Y  S  Q  R  F  L  P  W  T  D  S  Y  L  *  S  S  T  Y  P  R  *  S  S  Q  *  E  E  H  E  D  C  G  S  N  R  *  F  M  C  E  W  Y  E  N  F  A  N  H  L  S  L  L  N  G  V  V  E  H  V  P  F  R  L  G  *  C  I  T  D  V  S  D  V  S  I  Y  L  Y  G  G  V  I  L  Y  V  P  L  V  K  N  F  A  H  F  S  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25343" stop="25113"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSKKEDLYCEKVHEVLNLLFHPCTIIHFEICPALAESISPQPLLLSLLQLFTNKLSMDITSQVTMIGLITCEICYI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25034" stop="24816"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLFQLLCKWSKMSLRGHLEDFIPKGFFLGQTATCEAVLIQDDLPNKKSMKIVVLIDSSCVNGMKILLIIFLC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25951" stop="25874"/>
                    <exon start="25671" stop="25540"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMWNASIFSSEGKTPWEDVKREYVRKSILWDNDIKSTKHTLKEMITHYSSLGSPEGLAVIKSDTFADVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="25680" e_stop="25544"/>
            <exon e_start="24388" e_stop="23872"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25680" e_stop="25544" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="25543" i_stop="24389" i_length="1155"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="24388" e_stop="23872" e_length="517"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25680" stop="25544"/>
              <exon start="24388" stop="23995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25544"/>
              <exon start="24388" stop="23872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213725" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATTTCAGAGTATATTGTGGGATAATGATATCAAAAGTACAAAGCACACCCTGAAGGAAATGATTACACACTATTCTTCCCTTGGGAGCCCAGAGGGGCTGGCAGTAATTAAATCAGATACCTTTGCAGATGTAGC : GAAACTTTATGGAGAAGAGGAATACTATGAATATGTCTCAGAAAGCCGGAGGAAGCAGCAGATGAAATAAGATAAGTAGTTCACCCTCACTAATCATACAAGTCAATACACCAAGGTGTCGATTAAATTGGACTACCGTTATAATTTATAAAGCAAGAGATAGAGGTGGACTTTGCACATGAGGTTGTTAATGAGTTCTGACTTCCTTCCCGTGACGCGACTATACCCAACTGCTATCCCTTGTTTGAGTTTGAAGTAACATTCCACAACCGCTGAACGAATCCATCAGTTTGAACAATATTCATTGTAGGCTGTACACTAAATTGAACTTAGTGGGTTTACCTAACCTGCATAAACCAACACGATAGCTATGTATCCGTTGGATCATAAGGGGGTACAATTGAAGTTTTTGCTTTATTCATGCTGCAGACATCATTTGCAAATTTAATATATTTATGTTTAGTGATATGACTGAAATCATGTACAACTAAACAAATTTGAAGTTAGTATAAAGTCT</gDNA_template>
            <first_frame> *  F  Q  S  I  L  W  D  N  D  I  K  S  T  K  H  T  L  K  E  M  I  T  H  Y  S  S  L  G  S  P  E  G  L  A  V  I  K  S  D  T  F  A  D  V  A :   K  L  Y  G  E  E  E  Y  Y  E  Y  V  S  E  S  R  R  K  Q  Q  M  K  *  D  K  *  F  T  L  T  N  H  T  S  Q  Y  T  K  V  S  I  K  L  D  Y  R  Y  N  L  *  S  K  R  *  R  W  T  L  H  M  R  L  L  M  S  S  D  F  L  P  V  T  R  L  Y  P  T  A  I  P  C  L  S  L  K  *  H  S  T  T  A  E  R  I  H  Q  F  E  Q  Y  S  L  *  A  V  H  *  I  E  L  S  G  F  T  *  P  A  *  T  N  T  I  A  M  Y  P  L  D  H  K  G  V  Q  L  K  F  L  L  Y  S  C  C  R  H  H  L  Q  I  *  Y  I  Y  V  *  *  Y  D  *  N  H  V  Q  L  N  K  F  E  V  S  I  K  S </first_frame>
            <second_frame>  D  F  R  V  Y  C  G  I  M  I  S  K  V  Q  S  T  P  *  R  K  *  L  H  T  I  L  P  L  G  A  Q  R  G  W  Q  *  L  N  Q  I  P  L  Q  M  *   : R  N  F  M  E  K  R  N  T  M  N  M  S  Q  K  A  G  G  S  S  R  *  N  K  I  S  S  S  P  S  L  I  I  Q  V  N  T  P  R  C  R  L  N  W  T  T  V  I  I  Y  K  A  R  D  R  G  G  L  C  T  *  G  C  *  *  V  L  T  S  F  P  *  R  D  Y  T  Q  L  L  S  L  V  *  V  *  S  N  I  P  Q  P  L  N  E  S  I  S  L  N  N  I  H  C  R  L  Y  T  K  L  N  L  V  G  L  P  N  L  H  K  P  T  R  *  L  C  I  R  W  I  I  R  G  Y  N  *  S  F  C  F  I  H  A  A  D  I  I  C  K  F  N  I  F  M  F  S  D  M  T  E  I  M  Y  N  *  T  N  L  K  L  V  *  S   </second_frame>
            <third_frame>   I  S  E  Y  I  V  G  *  *  Y  Q  K  Y  K  A  H  P  E  G  N  D  Y  T  L  F  F  P  W  E  P  R  G  A  G  S  N  *  I  R  Y  L  C  R  C  S  :  E  T  L  W  R  R  G  I  L  *  I  C  L  R  K  P  E  E  A  A  D  E  I  R  *  V  V  H  P  H  *  S  Y  K  S  I  H  Q  G  V  D  *  I  G  L  P  L  *  F  I  K  Q  E  I  E  V  D  F  A  H  E  V  V  N  E  F  *  L  P  S  R  D  A  T  I  P  N  C  Y  P  L  F  E  F  E  V  T  F  H  N  R  *  T  N  P  S  V  *  T  I  F  I  V  G  C  T  L  N  *  T  *  W  V  Y  L  T  C  I  N  Q  H  D  S  Y  V  S  V  G  S  *  G  G  T  I  E  V  F  A  L  F  M  L  Q  T  S  F  A  N  L  I  Y  L  C  L  V  I  *  L  K  S  C  T  T  K  Q  I  *  S  *  Y  K  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25677" stop="25544"/>
                    <exon start="24388" stop="24319"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQSILWDNDIKSTKHTLKEMITHYSSLGSPEGLAVIKSDTFADVAKLYGEEEYYEYVSESRRKQQMK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="32119" PGL_stop="26718"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32119" e_stop="32017"/>
            <exon e_start="31170" e_stop="31093"/>
            <exon e_start="30905" e_stop="30800"/>
            <exon e_start="29666" e_stop="29583"/>
            <exon e_start="27921" e_stop="27813"/>
            <exon e_start="27710" e_stop="27643"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.186" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32119" e_stop="32017" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="32016" i_stop="31171" i_length="846"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31170" e_stop="31093" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.953" acc_prob="0.997">
            <gDNA_intron_boundary i_start="31092" i_stop="30906" i_length="187"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30905" e_stop="30800" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30799" i_stop="29667" i_length="1133"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29666" e_stop="29583" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="29582" i_stop="27922" i_length="1661"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27921" e_stop="27813" e_length="109"/>
          </exon>
          <intron i_serial="5" don_prob="0.968" acc_prob="0.186">
            <gDNA_intron_boundary i_start="27812" i_stop="27711" i_length="102"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27710" e_stop="27643" e_length="68"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32119" stop="32017"/>
              <exon start="31170" stop="31093"/>
              <exon start="30905" stop="30800"/>
              <exon start="29666" stop="29583"/>
              <exon start="27921" stop="27813"/>
              <exon start="27710" stop="27666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32100" stop="32017"/>
              <exon start="31170" stop="31093"/>
              <exon start="30905" stop="30800"/>
              <exon start="29666" stop="29583"/>
              <exon start="27921" stop="27813"/>
              <exon start="27710" stop="27643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32087" stop="32017"/>
              <exon start="31170" stop="31093"/>
              <exon start="30905" stop="30800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338930" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGACCCTTCCGCGGCGCCGCTCGTCAATTGCAACCACTCCGATACTCCGCCGTGGTTGGTCGCCGCCGGCTGGGAAAATTCTTCCTCTCTTTTCAAGTCAAG : GCATCGCACTAACTTATCTGCCTCGTCAGAATGATGGATTACAGAAACAAGCTAGTCTTGGCTCCAATGGTCCGAGTG : GGTACATTGCCGTTTAGGCTGCTTGCTGCCCAATATGGAGCTGACATAACCTATGGAGAGGAGATTATTGATCATAAGATCATCAAATGTGAGCGGCGAGTTAATG : AACGTGCCCCGAGGAGAGAAATCGAGTTGTATTTCAGATGGGCACTTCTGATGCCATGAGGGCTCTCAAAGCTGCTGAAATAGT : GTGTAAGGATGTAGCAGCAGTTGACGTAAACATGGGATGCCCCAAGTCATTCTCTATTAGTGGAGGCATGGGTGCTGCACTGTTGAGCAAACCAGAGCTCATCCATGAT : ATTTTGACAACATTGCGAAGGAACTTGGATGTACCAATAACATGCAAAATTAGGTTATTAAAAGATCC</gDNA_template>
            <first_frame> R  T  L  P  R  R  R  S  S  I  A  T  T  P  I  L  R  R  G  W  S  P  P  A  G  K  I  L  P  L  F  S  S  Q   : G  I  A  L  T  Y  L  P  R  Q  N  D  G  L  Q  K  Q  A  S  L  G  S  N  G  P  S   : G  Y  I  A  V  *  A  A  C  C  P  I  W  S  *  H  N  L  W  R  G  D  Y  *  S  *  D  H  Q  M  *  A  A  S  *  * :   T  C  P  E  E  R  N  R  V  V  F  Q  M  G  T  S  D  A  M  R  A  L  K  A  A  E  I  V :   C  K  D  V  A  A  V  D  V  N  M  G  C  P  K  S  F  S  I  S  G  G  M  G  A  A  L  L  S  K  P  E  L  I  H  D  :  I  L  T  T  L  R  R  N  L  D  V  P  I  T  C  K  I  R  L  L  K  D   </first_frame>
            <second_frame>  G  P  F  R  G  A  A  R  Q  L  Q  P  L  R  Y  S  A  V  V  G  R  R  R  L  G  K  F  F  L  S  F  Q  V  K  :  A  S  H  *  L  I  C  L  V  R  M  M  D  Y  R  N  K  L  V  L  A  P  M  V  R  V  :  G  T  L  P  F  R  L  L  A  A  Q  Y  G  A  D  I  T  Y  G  E  E  I  I  D  H  K  I  I  K  C  E  R  R  V  N   : E  R  A  P  R  R  E  I  E  L  Y  F  R  W  A  L  L  M  P  *  G  L  S  K  L  L  K  *   : C  V  R  M  *  Q  Q  L  T  *  T  W  D  A  P  S  H  S  L  L  V  E  A  W  V  L  H  C  *  A  N  Q  S  S  S  M  I :   F  *  Q  H  C  E  G  T  W  M  Y  Q  *  H  A  K  L  G  Y  *  K  I  </second_frame>
            <third_frame>   D  P  S  A  A  P  L  V  N  C  N  H  S  D  T  P  P  W  L  V  A  A  G  W  E  N  S  S  S  L  F  K  S  R :   H  R  T  N  L  S  A  S  S  E  *  W  I  T  E  T  S  *  S  W  L  Q  W  S  E  W :   V  H  C  R  L  G  C  L  L  P  N  M  E  L  T  *  P  M  E  R  R  L  L  I  I  R  S  S  N  V  S  G  E  L  M  :  N  V  P  R  G  E  K  S  S  C  I  S  D  G  H  F  *  C  H  E  G  S  Q  S  C  *  N  S  :  V  *  G  C  S  S  S  *  R  K  H  G  M  P  Q  V  I  L  Y  *  W  R  H  G  C  C  T  V  E  Q  T  R  A  H  P  *   : Y  F  D  N  I  A  K  E  L  G  C  T  N  N  M  Q  N  *  V  I  K  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29665" stop="29583"/>
                    <exon start="27921" stop="27813"/>
                    <exon start="27710" stop="27645"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCPEERNRVVFQMGTSDAMRALKAAEIVCKDVAAVDVNMGCPKSFSISGGMGAALLSKPELIHDILTTLRRNLDVPITCKIRLLKD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31158" stop="31093"/>
                    <exon start="30905" stop="30800"/>
                    <exon start="29666" stop="29608"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LICLVRMMDYRNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKIIKCERRVNERAPRREIELYFRWALLMP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32119" stop="32017"/>
                    <exon start="31170" stop="31093"/>
                    <exon start="30905" stop="30889"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTLPRRRSSIATTPILRRGWSPPAGKILPLFSSQGIALTYLPRQNDGLQKQASLGSNGPSGYIAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32087" e_stop="32017"/>
            <exon e_start="31170" e_stop="31093"/>
            <exon e_start="30905" e_stop="30800"/>
            <exon e_start="27921" e_stop="27813"/>
            <exon e_start="27710" e_stop="27574"/>
            <exon e_start="26822" e_stop="26718"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="0.986"/>
          <exon-intron don_prob="0.953" acc_prob="0.997" e_score="0.974"/>
          <exon-intron don_prob="0.991" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.186" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="32087" e_stop="32017" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="32016" i_stop="31171" i_length="846"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="31170" e_stop="31093" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.953" acc_prob="0.997">
            <gDNA_intron_boundary i_start="31092" i_stop="30906" i_length="187"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30905" e_stop="30800" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.985">
            <gDNA_intron_boundary i_start="30799" i_stop="27922" i_length="2878"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27921" e_stop="27813" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.186">
            <gDNA_intron_boundary i_start="27812" i_stop="27711" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="27710" e_stop="27574" e_length="137"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27573" i_stop="26823" i_length="751"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26822" e_stop="26718" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32087" stop="32017"/>
              <exon start="31170" stop="31093"/>
              <exon start="30905" stop="30800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31134" stop="31093"/>
              <exon start="30905" stop="30800"/>
              <exon start="27921" stop="27813"/>
              <exon start="27710" stop="27574"/>
              <exon start="26822" stop="26718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313069" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACCACTCCGATACTCCGCCGTGGTTGGTCGCCGCCGGCTGGGAAAATTCTTCCTCTCTTTTCAAGTCAAG : GCATCGCACTAACTTATCTGCCTCGTCAGAATGATGGATTACAGAAACAAGCTAGTCTTGGCTCCAATGGTCCGAGTG : GGTACATTGCCGTTTAGGCTGCTTGCTGCCCAATATGGAGCTGACATAACCTATGGAGAGGAGATTATTGATCATAAGATCATCAAATGTGAGCGGCGAGTTAATG : GTGTAAGGATGTAGCAGCAGTTGACGTAAACATGGGATGCCCCAAGTCATTCTCTATTAGTGGAGGCATGGGTGCTGCACTGTTGAGCAAACCAGAGCTCATCCATGAT : ATTTTGACAACATTGCGAAGGAACTTGGATGTACCAATAACATGCAAAATTAGGTTATTAAAAGATCCGCAAGATACAGTGGAATTGGCACGACGAATTGAGATGACTGGTGTCTCTGCTCTTGCTGTCCATGGAAG : GAAAGTTCCAGATAGGCCAAGAGATCCTGCAAAGTGGAATGAGATTGCTGATGTTGCTGCCGCTCTCTCTATTCCAGTTATAGCAAATGGTGATGTTTTTGAATA</gDNA_template>
            <first_frame> N  H  S  D  T  P  P  W  L  V  A  A  G  W  E  N  S  S  S  L  F  K  S  R :   H  R  T  N  L  S  A  S  S  E  *  W  I  T  E  T  S  *  S  W  L  Q  W  S  E  W :   V  H  C  R  L  G  C  L  L  P  N  M  E  L  T  *  P  M  E  R  R  L  L  I  I  R  S  S  N  V  S  G  E  L  M  :  V  *  G  C  S  S  S  *  R  K  H  G  M  P  Q  V  I  L  Y  *  W  R  H  G  C  C  T  V  E  Q  T  R  A  H  P  *   : Y  F  D  N  I  A  K  E  L  G  C  T  N  N  M  Q  N  *  V  I  K  R  S  A  R  Y  S  G  I  G  T  T  N  *  D  D  W  C  L  C  S  C  C  P  W  K  :  E  S  S  R  *  A  K  R  S  C  K  V  E  *  D  C  *  C  C  C  R  S  L  Y  S  S  Y  S  K  W  *  C  F  *  I </first_frame>
            <second_frame>  T  T  P  I  L  R  R  G  W  S  P  P  A  G  K  I  L  P  L  F  S  S  Q   : G  I  A  L  T  Y  L  P  R  Q  N  D  G  L  Q  K  Q  A  S  L  G  S  N  G  P  S   : G  Y  I  A  V  *  A  A  C  C  P  I  W  S  *  H  N  L  W  R  G  D  Y  *  S  *  D  H  Q  M  *  A  A  S  *  W :   C  K  D  V  A  A  V  D  V  N  M  G  C  P  K  S  F  S  I  S  G  G  M  G  A  A  L  L  S  K  P  E  L  I  H  D  :  I  L  T  T  L  R  R  N  L  D  V  P  I  T  C  K  I  R  L  L  K  D  P  Q  D  T  V  E  L  A  R  R  I  E  M  T  G  V  S  A  L  A  V  H  G  R :   K  V  P  D  R  P  R  D  P  A  K  W  N  E  I  A  D  V  A  A  A  L  S  I  P  V  I  A  N  G  D  V  F  E   </second_frame>
            <third_frame>   P  L  R  Y  S  A  V  V  G  R  R  R  L  G  K  F  F  L  S  F  Q  V  K  :  A  S  H  *  L  I  C  L  V  R  M  M  D  Y  R  N  K  L  V  L  A  P  M  V  R  V  :  G  T  L  P  F  R  L  L  A  A  Q  Y  G  A  D  I  T  Y  G  E  E  I  I  D  H  K  I  I  K  C  E  R  R  V  N   : G  V  R  M  *  Q  Q  L  T  *  T  W  D  A  P  S  H  S  L  L  V  E  A  W  V  L  H  C  *  A  N  Q  S  S  S  M  I :   F  *  Q  H  C  E  G  T  W  M  Y  Q  *  H  A  K  L  G  Y  *  K  I  R  K  I  Q  W  N  W  H  D  E  L  R  *  L  V  S  L  L  L  L  S  M  E   : G  K  F  Q  I  G  Q  E  I  L  Q  S  G  M  R  L  L  M  L  L  P  L  S  L  F  Q  L  *  Q  M  V  M  F  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30801" stop="30800"/>
                    <exon start="27921" stop="27813"/>
                    <exon start="27710" stop="27574"/>
                    <exon start="26822" stop="26720"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WCKDVAAVDVNMGCPKSFSISGGMGAALLSKPELIHDILTTLRRNLDVPITCKIRLLKDPQDTVELARRIEMTGVSALAVHGRKVPDRPRDPAKWNEIADVAAALSIPVIANGDVFE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="38021" PGL_stop="40678"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38021" e_stop="38507"/>
            <exon e_start="40338" e_stop="40678"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38021" e_stop="38507" e_length="487"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.977">
            <gDNA_intron_boundary i_start="38508" i_stop="40337" i_length="1830"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="40338" e_stop="40678" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38021" stop="38507"/>
              <exon start="40338" stop="40557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38021" stop="38507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38202" stop="38507"/>
              <exon start="40338" stop="40678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369051" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAAATGTGATTGGAGGAAGTTCCAGTGAGGAGGCACTTCACCAGGTGCATGATGTCAAGGTGGATGAAGACCTTCCTGAAAGGGAGGACCTTATATTAGAAGAAGCACAATCTCTCGATAATTCAACTTCAGATGAACCTTTCGTTGGCCTGGAGTTTGAATCTGAAGCCGCAGCACATGCATTTTATAATGCATATGCAACAAGGGTGGGTTTTATCATCCGGGTTAGTAAGCTTTCGCGATCTAGGCGTGATGGCTCCGCCATTGGTCGAGCACTAGTTTGCAACAAGGAGGGTTTTAGAATGCCTGATAAGCGGGAAAAGATTGTGCGACAGAGAGCAGAAACAAGGGTTGGTTGCAGAGCAATGATATTAGTTAGAAAAATAAGCTCTGGGAAATGGGTTGTCACAAAATTTGTCAAGGAGCACTCTCATCCATTGTGCCCAGGCAAAGGTCGCAGGGACTTGATCTATGATCAATACCCG : AACGAGCATGACAAAATCCGGGAACTATCTCAACAACTGGCAGCTGAGAAAAAGCGATCTGCTACATATAAGAGGCATTTGGAAATGATTTTCGAGCACATTGAGGAGCACAATCAATCTCTGTCTAAGAAGATCCAAGATATTGTACACAATGTTAGGGAGTTGGAGTCCAGAGATGAACATCATCATAGATAGTTTTAGCTTAATATGCCTTTGTTGATATTAGTGTAGAACCTAAGTTCAGTAAAGATCATAATGATTACTGTCTTGACTTGCCTTTTTTTCCCTCTCCCTGTTATCCTTTTCATTTTCTTTGGGAAGAGTATGAAAAATTTAAAACC</gDNA_template>
            <first_frame> *  K  C  D  W  R  K  F  Q  *  G  G  T  S  P  G  A  *  C  Q  G  G  *  R  P  S  *  K  G  G  P  Y  I  R  R  S  T  I  S  R  *  F  N  F  R  *  T  F  R  W  P  G  V  *  I  *  S  R  S  T  C  I  L  *  C  I  C  N  K  G  G  F  Y  H  P  G  *  *  A  F  A  I  *  A  *  W  L  R  H  W  S  S  T  S  L  Q  Q  G  G  F  *  N  A  *  *  A  G  K  D  C  A  T  E  S  R  N  K  G  W  L  Q  S  N  D  I  S  *  K  N  K  L  W  E  M  G  C  H  K  I  C  Q  G  A  L  S  S  I  V  P  R  Q  R  S  Q  G  L  D  L  *  S  I  P   : E  R  A  *  Q  N  P  G  T  I  S  T  T  G  S  *  E  K  A  I  C  Y  I  *  E  A  F  G  N  D  F  R  A  H  *  G  A  Q  S  I  S  V  *  E  D  P  R  Y  C  T  Q  C  *  G  V  G  V  Q  R  *  T  S  S  *  I  V  L  A  *  Y  A  F  V  D  I  S  V  E  P  K  F  S  K  D  H  N  D  Y  C  L  D  L  P  F  F  P  S  P  C  Y  P  F  H  F  L  W  E  E  Y  E  K  F  K  T </first_frame>
            <second_frame>  E  N  V  I  G  G  S  S  S  E  E  A  L  H  Q  V  H  D  V  K  V  D  E  D  L  P  E  R  E  D  L  I  L  E  E  A  Q  S  L  D  N  S  T  S  D  E  P  F  V  G  L  E  F  E  S  E  A  A  A  H  A  F  Y  N  A  Y  A  T  R  V  G  F  I  I  R  V  S  K  L  S  R  S  R  R  D  G  S  A  I  G  R  A  L  V  C  N  K  E  G  F  R  M  P  D  K  R  E  K  I  V  R  Q  R  A  E  T  R  V  G  C  R  A  M  I  L  V  R  K  I  S  S  G  K  W  V  V  T  K  F  V  K  E  H  S  H  P  L  C  P  G  K  G  R  R  D  L  I  Y  D  Q  Y  P  :  N  E  H  D  K  I  R  E  L  S  Q  Q  L  A  A  E  K  K  R  S  A  T  Y  K  R  H  L  E  M  I  F  E  H  I  E  E  H  N  Q  S  L  S  K  K  I  Q  D  I  V  H  N  V  R  E  L  E  S  R  D  E  H  H  H  R  *  F  *  L  N  M  P  L  L  I  L  V  *  N  L  S  S  V  K  I  I  M  I  T  V  L  T  C  L  F  F  P  L  P  V  I  L  F  I  F  F  G  K  S  M  K  N  L  K   </second_frame>
            <third_frame>   K  M  *  L  E  E  V  P  V  R  R  H  F  T  R  C  M  M  S  R  W  M  K  T  F  L  K  G  R  T  L  Y  *  K  K  H  N  L  S  I  I  Q  L  Q  M  N  L  S  L  A  W  S  L  N  L  K  P  Q  H  M  H  F  I  M  H  M  Q  Q  G  W  V  L  S  S  G  L  V  S  F  R  D  L  G  V  M  A  P  P  L  V  E  H  *  F  A  T  R  R  V  L  E  C  L  I  S  G  K  R  L  C  D  R  E  Q  K  Q  G  L  V  A  E  Q  *  Y  *  L  E  K  *  A  L  G  N  G  L  S  Q  N  L  S  R  S  T  L  I  H  C  A  Q  A  K  V  A  G  T  *  S  M  I  N  T  R :   T  S  M  T  K  S  G  N  Y  L  N  N  W  Q  L  R  K  S  D  L  L  H  I  R  G  I  W  K  *  F  S  S  T  L  R  S  T  I  N  L  C  L  R  R  S  K  I  L  Y  T  M  L  G  S  W  S  P  E  M  N  I  I  I  D  S  F  S  L  I  C  L  C  *  Y  *  C  R  T  *  V  Q  *  R  S  *  *  L  L  S  *  L  A  F  F  S  L  S  L  L  S  F  S  F  S  L  G  R  V  *  K  I  *  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38022" stop="38507"/>
                    <exon start="40338" stop="40532"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENVIGGSSSEEALHQVHDVKVDEDLPEREDLILEEAQSLDNSTSDEPFVGLEFESEAAAHAFYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKREKIVRQRAETRVGCRAMILVRKISSGKWVVTKFVKEHSHPLCPGKGRRDLIYDQYPNEHDKIRELSQQLAAEKKRSATYKRHLEMIFEHIEEHNQSLSKKIQDIVHNVRELESRDEHHHR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="48756" PGL_stop="52578"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48756" e_stop="49277"/>
            <exon e_start="50788" e_stop="51096"/>
            <exon e_start="51477" e_stop="52049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.935" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48756" e_stop="49277" e_length="522"/>
          </exon>
          <intron i_serial="1" don_prob="0.935" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50788" e_stop="51096" e_length="309"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380"/>
          </intron>
          <exon e_serial="3" e_score="0.975">
            <gDNA_exon_boundary e_start="51477" e_stop="52049" e_length="573"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48756" stop="49165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48758" stop="49277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48759" stop="49277"/>
              <exon start="50788" stop="50910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48760" stop="49197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48761" stop="49277"/>
              <exon start="50788" stop="51065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48763" stop="49277"/>
              <exon start="50788" stop="51065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48763" stop="49277"/>
              <exon start="50788" stop="51009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48764" stop="49277"/>
              <exon start="50788" stop="50862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48764" stop="49277"/>
              <exon start="50788" stop="50846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48764" stop="49277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48764" stop="48991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48766" stop="49277"/>
              <exon start="50788" stop="51090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48771" stop="49277"/>
              <exon start="50788" stop="50859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48772" stop="49246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48773" stop="49277"/>
              <exon start="50788" stop="51096"/>
              <exon start="51477" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48774" stop="49277"/>
              <exon start="50788" stop="51010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48774" stop="49119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48775" stop="49277"/>
              <exon start="50788" stop="51096"/>
              <exon start="51477" stop="51495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48785" stop="49277"/>
              <exon start="50788" stop="51010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48819" stop="49277"/>
              <exon start="50788" stop="51069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48826" stop="49277"/>
              <exon start="50788" stop="50909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48838" stop="49277"/>
              <exon start="50788" stop="51096"/>
              <exon start="51477" stop="51620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48842" stop="49277"/>
              <exon start="50788" stop="50836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48842" stop="49277"/>
              <exon start="50788" stop="50828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48842" stop="49079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48844" stop="49277"/>
              <exon start="50788" stop="50861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48952" stop="49277"/>
              <exon start="50788" stop="51096"/>
              <exon start="51477" stop="51808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48985" stop="49277"/>
              <exon start="50788" stop="51096"/>
              <exon start="51477" stop="51612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49014" stop="49277"/>
              <exon start="50788" stop="51096"/>
              <exon start="51477" stop="51762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49044" stop="49277"/>
              <exon start="50788" stop="51096"/>
              <exon start="51477" stop="51747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49067" stop="49277"/>
              <exon start="50788" stop="51096"/>
              <exon start="51477" stop="51622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50808" stop="51096"/>
              <exon start="51477" stop="51858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50812" stop="51096"/>
              <exon start="51477" stop="51895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50823" stop="51096"/>
              <exon start="51477" stop="51892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50823" stop="51096"/>
              <exon start="51477" stop="51891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50834" stop="51096"/>
              <exon start="51477" stop="52030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50849" stop="51096"/>
              <exon start="51477" stop="52049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50914" stop="51096"/>
              <exon start="51477" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50945" stop="51096"/>
              <exon start="51477" stop="51808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51073" stop="51096"/>
              <exon start="51477" stop="51812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51074" stop="51096"/>
              <exon start="51477" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51075" stop="51096"/>
              <exon start="51477" stop="51895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51075" stop="51096"/>
              <exon start="51477" stop="51895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51496" stop="51865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51555" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51558" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51562" stop="51895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51609" stop="51808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51612" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51626" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51628" stop="51895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51638" stop="51863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51701" stop="52020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308522" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCCACTCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA : GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG : AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTACATTTCGCCTCCTTGGTAGAATTGCATCAATTTCTTCTTCTTATAGCAATTTTATAAACATATTGATGCATTCTTGGACATGCTATGCATATTGCTACATAGTAAAATCTGGTTTTGTTACAAGAACTACTCCAC</gDNA_template>
            <first_frame> S  S  T  H  F  I  V  Y  I  L  L  L  F  Y  F  L  L  P  F  F  P  L  Q  T  L  H  F  S  V  F  D  *  K  F  S  F  L  V  F  W  T  K  S  P  A  L  G  F  L  D  F  C  R  V  F  L  F  C  L  T  D  P  F  G  G  I  F  E  S  *  K  V  L  S  S  L  H  K  K  L  Q  D  T  I  F  S  I  F  L  V  *  N  S  N  G  Y  V  L  N  *  C  *  E  A  K  S  *  V  I  K  D  K  K  M  K  I  Q  C  D  V  C  E  K  A  Q  A  T  V  I  C  C  A  D  E  A  A  L  C  A  K  C  D  I  E  V  H  A  A  N  K  L  A  S  K  H  Q  R  L  H  L  Q  C  L  S  N  K  L  P  P  C  D  I  C  Q  :  D  K  A  A  F  I  F  C  V  E  D  R  A  L  F  C  K  D  C  D  E  A  I  H  S  A  S  S  L  A  K  N  H  Q  R  F  L  A  T  G  I  R  V  A  L  S  S  S  C  N  K  E  S  V  K  N  Q  L  Q  P  Q  P  P  Q  Q  N  S  Q  Q  V  G  L  K  M  P  P  Q  Q  L  S  C  I  T  S  P  S  W  P  V  D  D  L  L  G  F  P  D  Y  E  S  S  D  K  :  K  D  L  L  E  L  G  E  F  E  W  L  G  G  I  D  L  F  G  E  Q  T  A  A  E  V  P  E  L  S  V  P  Q  S  S  N  T  N  I  Y  R  T  T  K  Y  Q  M  P  Y  K  K  S  R  I  E  I  P  D  D  D  E  Y  F  T  V  P  D  L  G  *  T  P  T  S  R  S  F  Q  L  N  V  H  V  C  L  C  V  V  L  N  Q  C  S  H  T  V  N  R  Y  V  Q  *  V  E  K  V  L  F  C  L  R  Y  S  L  S  C  L  L  S  Q  C  A  H  I  V  N  R  H  V  Q  *  V  E  E  T  L  F  C  L  R  Y  P  L  S  C  L  H  F  A  S  L  V  E  L  H  Q  F  L  L  L  I  A  I  L  *  T  Y  *  C  I  L  G  H  A  M  H  I  A  T  *  *  N  L  V  L  L  Q  E  L  L  H </first_frame>
            <second_frame>  L  P  L  I  S  L  S  I  F  F  F  F  S  T  F  S  S  H  F  S  H  Y  K  H  Y  I  F  L  F  L  I  E  S  F  H  F  *  Y  F  G  L  N  H  L  L  W  V  F  L  I  F  A  G  F  F  F  F  V  *  L  T  L  L  G  V  F  S  N  L  E  K  F  *  V  L  F  I  K  S  F  K  T  L  F  F  Q  F  F  L  C  E  T  Q  M  G  M  S  *  I  S  V  R  R  Q  R  V  K  *  *  K  I  K  R  *  R  Y  S  V  M  C  V  R  K  L  K  L  L  *  F  A  V  L  M  R  L  L  C  V  Q  N  V  I  L  K  F  M  L  L  I  N  *  Q  A  S  T  K  G  F  I  F  S  A  Y  L  T  S  F  L  L  V  I  F  A  K :   I  K  Q  P  S  S  S  V  L  R  I  E  L  S  F  A  R  T  V  T  K  Q  F  I  Q  P  A  A  S  L  R  T  T  N  A  S  *  P  L  E  S  V  *  P  *  A  Q  A  V  I  R  N  Q  *  K  T  N  C  S  H  N  H  L  S  R  I  P  N  K  L  A  *  K  C  L  H  S  S  C  P  V  *  H  H  H  L  G  L  S  M  I  Y  *  D  F  Q  I  M  S  R  V  T  R :   R  I  Y  L  S  L  V  N  L  S  G  *  G  A  L  I  S  L  V  N  K  Q  Q  L  K  C  P  S  Y  Q  Y  L  S  R  A  I  Q  I  F  T  G  Q  P  N  I  K  C  L  T  R  S  P  E  L  K  S  Q  M  M  M  S  I  L  L  S  P  I  L  V  E  L  Q  L  Q  E  V  S  N  *  M  C  M  C  A  C  V  *  Y  L  I  S  A  L  I  L  S  T  D  M  F  S  K  *  K  K  Y  C  S  A  *  D  T  P  Y  L  A  Y  F  R  S  A  L  I  L  S  T  D  M  F  S  K  *  R  K  H  Y  S  A  *  D  I  L  Y  L  A  Y  I  S  P  P  W  *  N  C  I  N  F  F  F  L  *  Q  F  Y  K  H  I  D  A  F  L  D  M  L  C  I  L  L  H  S  K  I  W  F  C  Y  K  N  Y  S   </second_frame>
            <third_frame>   F  H  S  F  H  C  L  Y  S  S  S  F  L  L  S  P  P  I  F  P  I  T  N  T  T  F  F  C  F  *  L  K  V  F  I  F  S  I  L  D  *  I  T  C  F  G  F  S  *  F  L  Q  G  F  S  F  L  S  D  *  P  F  W  G  Y  F  R  I  L  K  S  S  E  F  S  S  *  K  A  S  R  H  Y  F  F  N  F  S  C  V  K  L  K  W  V  C  L  E  L  V  L  G  G  K  E  L  S  N  K  R  *  K  D  E  D  T  V  *  C  V  *  E  S  S  S  Y  C  D  L  L  C  *  *  G  C  S  V  C  K  M  *  Y  *  S  S  C  C  *  *  I  S  K  Q  A  P  K  A  S  S  S  V  P  I  *  Q  A  S  S  L  *  Y  L  P   : R  *  S  S  L  H  L  L  C  *  G  *  S  S  L  L  Q  G  L  *  R  S  N  S  F  S  Q  Q  P  R  *  E  P  P  T  L  L  S  H  W  N  P  C  S  L  E  L  K  L  *  *  G  I  S  K  K  P  T  A  A  T  T  T  S  A  E  F  P  T  S  W  L  E  N  A  S  T  A  V  V  L  Y  N  I  T  I  L  A  C  R  *  F  T  R  I  S  R  L  *  V  E  *  Q   : E  G  S  T  *  A  W  *  I  *  V  V  R  G  H  *  S  L  W  *  T  N  S  S  *  S  A  R  A  I  S  T  S  V  E  Q  Y  K  Y  L  Q  D  N  Q  I  S  N  A  L  Q  E  V  Q  N  *  N  P  R  *  *  *  V  F  Y  C  P  R  S  W  L  N  S  N  F  K  K  F  P  I  K  C  A  C  V  L  V  C  S  T  *  S  V  L  S  Y  C  Q  Q  I  C  S  V  S  R  K  S  I  V  L  L  K  I  L  L  I  L  L  T  F  A  V  R  S  Y  C  Q  Q  T  C  S  V  S  R  G  N  T  I  L  L  K  I  S  F  I  L  L  T  F  R  L  L  G  R  I  A  S  I  S  S  S  Y  S  N  F  I  N  I  L  M  H  S  W  T  C  Y  A  Y  C  Y  I  V  K  S  G  F  V  T  R  T  T  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49077" stop="49277"/>
                    <exon start="50788" stop="51096"/>
                    <exon start="51477" stop="51686"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIKDKKMKIQCDVCEKAQATVICCADEAALCAKCDIEVHAANKLASKHQRLHLQCLSNKLPPCDICQDKAAFIFCVEDRALFCKDCDEAIHSASSLAKNHQRFLATGIRVALSSSCNKESVKNQLQPQPPQQNSQQVGLKMPPQQLSCITSPSWPVDDLLGFPDYESSDKKDLLELGEFEWLGGIDLFGEQTAAEVPELSVPQSSNTNIYRTTKYQMPYKKSRIEIPDDDEYFTVPDLG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51746" stop="52048"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVLSYCQQICSVSRKSIVLLKILLILLTFAVRSYCQQTCSVSRGNTILLKISFILLTFRLLGRIASISSSYSNFINILMHSWTCYAYCYIVKSGFVTRTTP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="48756" e_stop="49277"/>
            <exon e_start="50788" e_stop="51096"/>
            <exon e_start="51477" e_stop="51915"/>
            <exon e_start="52539" e_stop="52557"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.935" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.789"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48756" e_stop="49277" e_length="522"/>
          </exon>
          <intron i_serial="1" don_prob="0.935" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50788" e_stop="51096" e_length="309"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51477" e_stop="51915" e_length="439"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="51916" i_stop="52538" i_length="623"/>
          </intron>
          <exon e_serial="4" e_score="0.789">
            <gDNA_exon_boundary e_start="52539" e_stop="52557" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48756" stop="49165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48758" stop="49277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48759" stop="49277"/>
              <exon start="50788" stop="50910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48760" stop="49197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48761" stop="49277"/>
              <exon start="50788" stop="51065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48763" stop="49277"/>
              <exon start="50788" stop="51065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48763" stop="49277"/>
              <exon start="50788" stop="51009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48764" stop="49277"/>
              <exon start="50788" stop="50862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48764" stop="49277"/>
              <exon start="50788" stop="50846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48764" stop="49277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48764" stop="48991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48766" stop="49277"/>
              <exon start="50788" stop="51090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48771" stop="49277"/>
              <exon start="50788" stop="50859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48772" stop="49246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48773" stop="49277"/>
              <exon start="50788" stop="51096"/>
              <exon start="51477" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48774" stop="49277"/>
              <exon start="50788" stop="51010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48774" stop="49119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48775" stop="49277"/>
              <exon start="50788" stop="51096"/>
              <exon start="51477" stop="51495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48785" stop="49277"/>
              <exon start="50788" stop="51010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48819" stop="49277"/>
              <exon start="50788" stop="51069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48826" stop="49277"/>
              <exon start="50788" stop="50909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48838" stop="49277"/>
              <exon start="50788" stop="51096"/>
              <exon start="51477" stop="51620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48842" stop="49277"/>
              <exon start="50788" stop="50836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48842" stop="49277"/>
              <exon start="50788" stop="50828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48842" stop="49079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48844" stop="49277"/>
              <exon start="50788" stop="50861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48952" stop="49277"/>
              <exon start="50788" stop="51096"/>
              <exon start="51477" stop="51808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48985" stop="49277"/>
              <exon start="50788" stop="51096"/>
              <exon start="51477" stop="51612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49014" stop="49277"/>
              <exon start="50788" stop="51096"/>
              <exon start="51477" stop="51762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49044" stop="49277"/>
              <exon start="50788" stop="51096"/>
              <exon start="51477" stop="51747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49067" stop="49277"/>
              <exon start="50788" stop="51096"/>
              <exon start="51477" stop="51622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50808" stop="51096"/>
              <exon start="51477" stop="51858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50812" stop="51096"/>
              <exon start="51477" stop="51895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50823" stop="51096"/>
              <exon start="51477" stop="51892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50823" stop="51096"/>
              <exon start="51477" stop="51891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50914" stop="51096"/>
              <exon start="51477" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50945" stop="51096"/>
              <exon start="51477" stop="51808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51073" stop="51096"/>
              <exon start="51477" stop="51812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51074" stop="51096"/>
              <exon start="51477" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51075" stop="51096"/>
              <exon start="51477" stop="51895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51075" stop="51096"/>
              <exon start="51477" stop="51895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51496" stop="51865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51555" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51558" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51562" stop="51895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51609" stop="51808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51612" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51626" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51628" stop="51895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51638" stop="51863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51769" stop="51915"/>
              <exon start="52539" stop="52557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222611" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCCACTCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA : GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG : AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTAC : GAAAAAAGAAAAAAGATAA</gDNA_template>
            <first_frame> S  S  T  H  F  I  V  Y  I  L  L  L  F  Y  F  L  L  P  F  F  P  L  Q  T  L  H  F  S  V  F  D  *  K  F  S  F  L  V  F  W  T  K  S  P  A  L  G  F  L  D  F  C  R  V  F  L  F  C  L  T  D  P  F  G  G  I  F  E  S  *  K  V  L  S  S  L  H  K  K  L  Q  D  T  I  F  S  I  F  L  V  *  N  S  N  G  Y  V  L  N  *  C  *  E  A  K  S  *  V  I  K  D  K  K  M  K  I  Q  C  D  V  C  E  K  A  Q  A  T  V  I  C  C  A  D  E  A  A  L  C  A  K  C  D  I  E  V  H  A  A  N  K  L  A  S  K  H  Q  R  L  H  L  Q  C  L  S  N  K  L  P  P  C  D  I  C  Q  :  D  K  A  A  F  I  F  C  V  E  D  R  A  L  F  C  K  D  C  D  E  A  I  H  S  A  S  S  L  A  K  N  H  Q  R  F  L  A  T  G  I  R  V  A  L  S  S  S  C  N  K  E  S  V  K  N  Q  L  Q  P  Q  P  P  Q  Q  N  S  Q  Q  V  G  L  K  M  P  P  Q  Q  L  S  C  I  T  S  P  S  W  P  V  D  D  L  L  G  F  P  D  Y  E  S  S  D  K  :  K  D  L  L  E  L  G  E  F  E  W  L  G  G  I  D  L  F  G  E  Q  T  A  A  E  V  P  E  L  S  V  P  Q  S  S  N  T  N  I  Y  R  T  T  K  Y  Q  M  P  Y  K  K  S  R  I  E  I  P  D  D  D  E  Y  F  T  V  P  D  L  G  *  T  P  T  S  R  S  F  Q  L  N  V  H  V  C  L  C  V  V  L  N  Q  C  S  H  T  V  N  R  Y  V  Q  *  V  E  K  V  L  F  C  L  R  Y  S  L  S  C  L  L  S  Q  C  A  H  I  V  N  R  H  V  Q  *  V  E  E  T  L  F  C  L  R  Y  P  L  S  C  L   : R  K  K  K  K  D   </first_frame>
            <second_frame>  L  P  L  I  S  L  S  I  F  F  F  F  S  T  F  S  S  H  F  S  H  Y  K  H  Y  I  F  L  F  L  I  E  S  F  H  F  *  Y  F  G  L  N  H  L  L  W  V  F  L  I  F  A  G  F  F  F  F  V  *  L  T  L  L  G  V  F  S  N  L  E  K  F  *  V  L  F  I  K  S  F  K  T  L  F  F  Q  F  F  L  C  E  T  Q  M  G  M  S  *  I  S  V  R  R  Q  R  V  K  *  *  K  I  K  R  *  R  Y  S  V  M  C  V  R  K  L  K  L  L  *  F  A  V  L  M  R  L  L  C  V  Q  N  V  I  L  K  F  M  L  L  I  N  *  Q  A  S  T  K  G  F  I  F  S  A  Y  L  T  S  F  L  L  V  I  F  A  K :   I  K  Q  P  S  S  S  V  L  R  I  E  L  S  F  A  R  T  V  T  K  Q  F  I  Q  P  A  A  S  L  R  T  T  N  A  S  *  P  L  E  S  V  *  P  *  A  Q  A  V  I  R  N  Q  *  K  T  N  C  S  H  N  H  L  S  R  I  P  N  K  L  A  *  K  C  L  H  S  S  C  P  V  *  H  H  H  L  G  L  S  M  I  Y  *  D  F  Q  I  M  S  R  V  T  R :   R  I  Y  L  S  L  V  N  L  S  G  *  G  A  L  I  S  L  V  N  K  Q  Q  L  K  C  P  S  Y  Q  Y  L  S  R  A  I  Q  I  F  T  G  Q  P  N  I  K  C  L  T  R  S  P  E  L  K  S  Q  M  M  M  S  I  L  L  S  P  I  L  V  E  L  Q  L  Q  E  V  S  N  *  M  C  M  C  A  C  V  *  Y  L  I  S  A  L  I  L  S  T  D  M  F  S  K  *  K  K  Y  C  S  A  *  D  T  P  Y  L  A  Y  F  R  S  A  L  I  L  S  T  D  M  F  S  K  *  R  K  H  Y  S  A  *  D  I  L  Y  L  A  Y  :  E  K  R  K  K  I  </second_frame>
            <third_frame>   F  H  S  F  H  C  L  Y  S  S  S  F  L  L  S  P  P  I  F  P  I  T  N  T  T  F  F  C  F  *  L  K  V  F  I  F  S  I  L  D  *  I  T  C  F  G  F  S  *  F  L  Q  G  F  S  F  L  S  D  *  P  F  W  G  Y  F  R  I  L  K  S  S  E  F  S  S  *  K  A  S  R  H  Y  F  F  N  F  S  C  V  K  L  K  W  V  C  L  E  L  V  L  G  G  K  E  L  S  N  K  R  *  K  D  E  D  T  V  *  C  V  *  E  S  S  S  Y  C  D  L  L  C  *  *  G  C  S  V  C  K  M  *  Y  *  S  S  C  C  *  *  I  S  K  Q  A  P  K  A  S  S  S  V  P  I  *  Q  A  S  S  L  *  Y  L  P   : R  *  S  S  L  H  L  L  C  *  G  *  S  S  L  L  Q  G  L  *  R  S  N  S  F  S  Q  Q  P  R  *  E  P  P  T  L  L  S  H  W  N  P  C  S  L  E  L  K  L  *  *  G  I  S  K  K  P  T  A  A  T  T  T  S  A  E  F  P  T  S  W  L  E  N  A  S  T  A  V  V  L  Y  N  I  T  I  L  A  C  R  *  F  T  R  I  S  R  L  *  V  E  *  Q   : E  G  S  T  *  A  W  *  I  *  V  V  R  G  H  *  S  L  W  *  T  N  S  S  *  S  A  R  A  I  S  T  S  V  E  Q  Y  K  Y  L  Q  D  N  Q  I  S  N  A  L  Q  E  V  Q  N  *  N  P  R  *  *  *  V  F  Y  C  P  R  S  W  L  N  S  N  F  K  K  F  P  I  K  C  A  C  V  L  V  C  S  T  *  S  V  L  S  Y  C  Q  Q  I  C  S  V  S  R  K  S  I  V  L  L  K  I  L  L  I  L  L  T  F  A  V  R  S  Y  C  Q  Q  T  C  S  V  S  R  G  N  T  I  L  L  K  I  S  F  I  L  L  T :   K  K  E  K  R  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49077" stop="49277"/>
                    <exon start="50788" stop="51096"/>
                    <exon start="51477" stop="51686"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIKDKKMKIQCDVCEKAQATVICCADEAALCAKCDIEVHAANKLASKHQRLHLQCLSNKLPPCDICQDKAAFIFCVEDRALFCKDCDEAIHSASSLAKNHQRFLATGIRVALSSSCNKESVKNQLQPQPPQQNSQQVGLKMPPQQLSCITSPSWPVDDLLGFPDYESSDKKDLLELGEFEWLGGIDLFGEQTAAEVPELSVPQSSNTNIYRTTKYQMPYKKSRIEIPDDDEYFTVPDLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="48756" e_stop="49277"/>
            <exon e_start="50788" e_stop="50913"/>
            <exon e_start="50995" e_stop="51096"/>
            <exon e_start="51477" e_stop="52020"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.935" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.980"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48756" e_stop="49277" e_length="522"/>
          </exon>
          <intron i_serial="1" don_prob="0.935" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50788" e_stop="50913" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50914" i_stop="50994" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="50995" e_stop="51096" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="51477" e_stop="52020" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48756" stop="49165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48758" stop="49277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48759" stop="49277"/>
              <exon start="50788" stop="50910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48760" stop="49197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48764" stop="49277"/>
              <exon start="50788" stop="50862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48764" stop="49277"/>
              <exon start="50788" stop="50846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48764" stop="49277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48764" stop="48991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48771" stop="49277"/>
              <exon start="50788" stop="50859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48772" stop="49246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48774" stop="49119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48826" stop="49277"/>
              <exon start="50788" stop="50909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48842" stop="49277"/>
              <exon start="50788" stop="50836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48842" stop="49277"/>
              <exon start="50788" stop="50828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48842" stop="49079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48844" stop="49277"/>
              <exon start="50788" stop="50861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50841" stop="50913"/>
              <exon start="50995" stop="51096"/>
              <exon start="51477" stop="51808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51073" stop="51096"/>
              <exon start="51477" stop="51812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51074" stop="51096"/>
              <exon start="51477" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51075" stop="51096"/>
              <exon start="51477" stop="51895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51075" stop="51096"/>
              <exon start="51477" stop="51895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51496" stop="51865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51555" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51558" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51562" stop="51895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51609" stop="51808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51612" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51626" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51628" stop="51895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51638" stop="51863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51701" stop="52020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308522" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCCACTCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA : GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGT : GTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG : AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTACATTTCGCCTCCTTGGTAGAATTGCATCAATTTCTTCTTCTTATAGCAATTTTATAAACATATTGATGCATTCTTGGACATGCTATGCATATTGCTACATAGTAAA</gDNA_template>
            <first_frame> S  S  T  H  F  I  V  Y  I  L  L  L  F  Y  F  L  L  P  F  F  P  L  Q  T  L  H  F  S  V  F  D  *  K  F  S  F  L  V  F  W  T  K  S  P  A  L  G  F  L  D  F  C  R  V  F  L  F  C  L  T  D  P  F  G  G  I  F  E  S  *  K  V  L  S  S  L  H  K  K  L  Q  D  T  I  F  S  I  F  L  V  *  N  S  N  G  Y  V  L  N  *  C  *  E  A  K  S  *  V  I  K  D  K  K  M  K  I  Q  C  D  V  C  E  K  A  Q  A  T  V  I  C  C  A  D  E  A  A  L  C  A  K  C  D  I  E  V  H  A  A  N  K  L  A  S  K  H  Q  R  L  H  L  Q  C  L  S  N  K  L  P  P  C  D  I  C  Q  :  D  K  A  A  F  I  F  C  V  E  D  R  A  L  F  C  K  D  C  D  E  A  I  H  S  A  S  S  L  A  K  N  H  Q  R  F  L  A  T  G  I  R  :  V  G  L  K  M  P  P  Q  Q  L  S  C  I  T  S  P  S  W  P  V  D  D  L  L  G  F  P  D  Y  E  S  S  D  K  :  K  D  L  L  E  L  G  E  F  E  W  L  G  G  I  D  L  F  G  E  Q  T  A  A  E  V  P  E  L  S  V  P  Q  S  S  N  T  N  I  Y  R  T  T  K  Y  Q  M  P  Y  K  K  S  R  I  E  I  P  D  D  D  E  Y  F  T  V  P  D  L  G  *  T  P  T  S  R  S  F  Q  L  N  V  H  V  C  L  C  V  V  L  N  Q  C  S  H  T  V  N  R  Y  V  Q  *  V  E  K  V  L  F  C  L  R  Y  S  L  S  C  L  L  S  Q  C  A  H  I  V  N  R  H  V  Q  *  V  E  E  T  L  F  C  L  R  Y  P  L  S  C  L  H  F  A  S  L  V  E  L  H  Q  F  L  L  L  I  A  I  L  *  T  Y  *  C  I  L  G  H  A  M  H  I  A  T  *  *  </first_frame>
            <second_frame>  L  P  L  I  S  L  S  I  F  F  F  F  S  T  F  S  S  H  F  S  H  Y  K  H  Y  I  F  L  F  L  I  E  S  F  H  F  *  Y  F  G  L  N  H  L  L  W  V  F  L  I  F  A  G  F  F  F  F  V  *  L  T  L  L  G  V  F  S  N  L  E  K  F  *  V  L  F  I  K  S  F  K  T  L  F  F  Q  F  F  L  C  E  T  Q  M  G  M  S  *  I  S  V  R  R  Q  R  V  K  *  *  K  I  K  R  *  R  Y  S  V  M  C  V  R  K  L  K  L  L  *  F  A  V  L  M  R  L  L  C  V  Q  N  V  I  L  K  F  M  L  L  I  N  *  Q  A  S  T  K  G  F  I  F  S  A  Y  L  T  S  F  L  L  V  I  F  A  K :   I  K  Q  P  S  S  S  V  L  R  I  E  L  S  F  A  R  T  V  T  K  Q  F  I  Q  P  A  A  S  L  R  T  T  N  A  S  *  P  L  E  S  V :   L  A  *  K  C  L  H  S  S  C  P  V  *  H  H  H  L  G  L  S  M  I  Y  *  D  F  Q  I  M  S  R  V  T  R :   R  I  Y  L  S  L  V  N  L  S  G  *  G  A  L  I  S  L  V  N  K  Q  Q  L  K  C  P  S  Y  Q  Y  L  S  R  A  I  Q  I  F  T  G  Q  P  N  I  K  C  L  T  R  S  P  E  L  K  S  Q  M  M  M  S  I  L  L  S  P  I  L  V  E  L  Q  L  Q  E  V  S  N  *  M  C  M  C  A  C  V  *  Y  L  I  S  A  L  I  L  S  T  D  M  F  S  K  *  K  K  Y  C  S  A  *  D  T  P  Y  L  A  Y  F  R  S  A  L  I  L  S  T  D  M  F  S  K  *  R  K  H  Y  S  A  *  D  I  L  Y  L  A  Y  I  S  P  P  W  *  N  C  I  N  F  F  F  L  *  Q  F  Y  K  H  I  D  A  F  L  D  M  L  C  I  L  L  H  S  K </second_frame>
            <third_frame>   F  H  S  F  H  C  L  Y  S  S  S  F  L  L  S  P  P  I  F  P  I  T  N  T  T  F  F  C  F  *  L  K  V  F  I  F  S  I  L  D  *  I  T  C  F  G  F  S  *  F  L  Q  G  F  S  F  L  S  D  *  P  F  W  G  Y  F  R  I  L  K  S  S  E  F  S  S  *  K  A  S  R  H  Y  F  F  N  F  S  C  V  K  L  K  W  V  C  L  E  L  V  L  G  G  K  E  L  S  N  K  R  *  K  D  E  D  T  V  *  C  V  *  E  S  S  S  Y  C  D  L  L  C  *  *  G  C  S  V  C  K  M  *  Y  *  S  S  C  C  *  *  I  S  K  Q  A  P  K  A  S  S  S  V  P  I  *  Q  A  S  S  L  *  Y  L  P   : R  *  S  S  L  H  L  L  C  *  G  *  S  S  L  L  Q  G  L  *  R  S  N  S  F  S  Q  Q  P  R  *  E  P  P  T  L  L  S  H  W  N  P   : C  W  L  E  N  A  S  T  A  V  V  L  Y  N  I  T  I  L  A  C  R  *  F  T  R  I  S  R  L  *  V  E  *  Q   : E  G  S  T  *  A  W  *  I  *  V  V  R  G  H  *  S  L  W  *  T  N  S  S  *  S  A  R  A  I  S  T  S  V  E  Q  Y  K  Y  L  Q  D  N  Q  I  S  N  A  L  Q  E  V  Q  N  *  N  P  R  *  *  *  V  F  Y  C  P  R  S  W  L  N  S  N  F  K  K  F  P  I  K  C  A  C  V  L  V  C  S  T  *  S  V  L  S  Y  C  Q  Q  I  C  S  V  S  R  K  S  I  V  L  L  K  I  L  L  I  L  L  T  F  A  V  R  S  Y  C  Q  Q  T  C  S  V  S  R  G  N  T  I  L  L  K  I  S  F  I  L  L  T  F  R  L  L  G  R  I  A  S  I  S  S  S  Y  S  N  F  I  N  I  L  M  H  S  W  T  C  Y  A  Y  C  Y  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49077" stop="49277"/>
                    <exon start="50788" stop="50913"/>
                    <exon start="50995" stop="51096"/>
                    <exon start="51477" stop="51686"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIKDKKMKIQCDVCEKAQATVICCADEAALCAKCDIEVHAANKLASKHQRLHLQCLSNKLPPCDICQDKAAFIFCVEDRALFCKDCDEAIHSASSLAKNHQRFLATGIRVGLKMPPQQLSCITSPSWPVDDLLGFPDYESSDKKDLLELGEFEWLGGIDLFGEQTAAEVPELSVPQSSNTNIYRTTKYQMPYKKSRIEIPDDDEYFTVPDLG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51746" stop="52018"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVLSYCQQICSVSRKSIVLLKILLILLTFAVRSYCQQTCSVSRGNTILLKISFILLTFRLLGRIASISSSYSNFINILMHSWTCYAYCYIV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="48756" e_stop="49277"/>
            <exon e_start="50788" e_stop="50944"/>
            <exon e_start="51019" e_stop="51096"/>
            <exon e_start="51477" e_stop="52020"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.935" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48756" e_stop="49277" e_length="522"/>
          </exon>
          <intron i_serial="1" don_prob="0.935" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50788" e_stop="50944" e_length="157"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50945" i_stop="51018" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51019" e_stop="51096" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="51477" e_stop="52020" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48756" stop="49165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48758" stop="49277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48759" stop="49277"/>
              <exon start="50788" stop="50910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48760" stop="49197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48764" stop="49277"/>
              <exon start="50788" stop="50862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48764" stop="49277"/>
              <exon start="50788" stop="50846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48764" stop="49277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48764" stop="48991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48771" stop="49277"/>
              <exon start="50788" stop="50859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48772" stop="49246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48774" stop="49119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48826" stop="49277"/>
              <exon start="50788" stop="50909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48842" stop="49277"/>
              <exon start="50788" stop="50836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48842" stop="49277"/>
              <exon start="50788" stop="50828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48842" stop="49079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48844" stop="49277"/>
              <exon start="50788" stop="50861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50788" stop="50944"/>
              <exon start="51019" stop="51096"/>
              <exon start="51477" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51073" stop="51096"/>
              <exon start="51477" stop="51812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51074" stop="51096"/>
              <exon start="51477" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51075" stop="51096"/>
              <exon start="51477" stop="51895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51075" stop="51096"/>
              <exon start="51477" stop="51895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51496" stop="51865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51555" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51558" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51562" stop="51895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51609" stop="51808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51612" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51626" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51628" stop="51895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51638" stop="51863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51701" stop="52020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308522" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCCACTCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA : GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAAT : CAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG : AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTACATTTCGCCTCCTTGGTAGAATTGCATCAATTTCTTCTTCTTATAGCAATTTTATAAACATATTGATGCATTCTTGGACATGCTATGCATATTGCTACATAGTAAA</gDNA_template>
            <first_frame> S  S  T  H  F  I  V  Y  I  L  L  L  F  Y  F  L  L  P  F  F  P  L  Q  T  L  H  F  S  V  F  D  *  K  F  S  F  L  V  F  W  T  K  S  P  A  L  G  F  L  D  F  C  R  V  F  L  F  C  L  T  D  P  F  G  G  I  F  E  S  *  K  V  L  S  S  L  H  K  K  L  Q  D  T  I  F  S  I  F  L  V  *  N  S  N  G  Y  V  L  N  *  C  *  E  A  K  S  *  V  I  K  D  K  K  M  K  I  Q  C  D  V  C  E  K  A  Q  A  T  V  I  C  C  A  D  E  A  A  L  C  A  K  C  D  I  E  V  H  A  A  N  K  L  A  S  K  H  Q  R  L  H  L  Q  C  L  S  N  K  L  P  P  C  D  I  C  Q  :  D  K  A  A  F  I  F  C  V  E  D  R  A  L  F  C  K  D  C  D  E  A  I  H  S  A  S  S  L  A  K  N  H  Q  R  F  L  A  T  G  I  R  V  A  L  S  S  S  C  N  K  E   : S  V  V  L  Y  N  I  T  I  L  A  C  R  *  F  T  R  I  S  R  L  *  V  E  *  Q   : E  G  S  T  *  A  W  *  I  *  V  V  R  G  H  *  S  L  W  *  T  N  S  S  *  S  A  R  A  I  S  T  S  V  E  Q  Y  K  Y  L  Q  D  N  Q  I  S  N  A  L  Q  E  V  Q  N  *  N  P  R  *  *  *  V  F  Y  C  P  R  S  W  L  N  S  N  F  K  K  F  P  I  K  C  A  C  V  L  V  C  S  T  *  S  V  L  S  Y  C  Q  Q  I  C  S  V  S  R  K  S  I  V  L  L  K  I  L  L  I  L  L  T  F  A  V  R  S  Y  C  Q  Q  T  C  S  V  S  R  G  N  T  I  L  L  K  I  S  F  I  L  L  T  F  R  L  L  G  R  I  A  S  I  S  S  S  Y  S  N  F  I  N  I  L  M  H  S  W  T  C  Y  A  Y  C  Y  I  V   </first_frame>
            <second_frame>  L  P  L  I  S  L  S  I  F  F  F  F  S  T  F  S  S  H  F  S  H  Y  K  H  Y  I  F  L  F  L  I  E  S  F  H  F  *  Y  F  G  L  N  H  L  L  W  V  F  L  I  F  A  G  F  F  F  F  V  *  L  T  L  L  G  V  F  S  N  L  E  K  F  *  V  L  F  I  K  S  F  K  T  L  F  F  Q  F  F  L  C  E  T  Q  M  G  M  S  *  I  S  V  R  R  Q  R  V  K  *  *  K  I  K  R  *  R  Y  S  V  M  C  V  R  K  L  K  L  L  *  F  A  V  L  M  R  L  L  C  V  Q  N  V  I  L  K  F  M  L  L  I  N  *  Q  A  S  T  K  G  F  I  F  S  A  Y  L  T  S  F  L  L  V  I  F  A  K :   I  K  Q  P  S  S  S  V  L  R  I  E  L  S  F  A  R  T  V  T  K  Q  F  I  Q  P  A  A  S  L  R  T  T  N  A  S  *  P  L  E  S  V  *  P  *  A  Q  A  V  I  R  N  :  Q  L  S  C  I  T  S  P  S  W  P  V  D  D  L  L  G  F  P  D  Y  E  S  S  D  K  :  K  D  L  L  E  L  G  E  F  E  W  L  G  G  I  D  L  F  G  E  Q  T  A  A  E  V  P  E  L  S  V  P  Q  S  S  N  T  N  I  Y  R  T  T  K  Y  Q  M  P  Y  K  K  S  R  I  E  I  P  D  D  D  E  Y  F  T  V  P  D  L  G  *  T  P  T  S  R  S  F  Q  L  N  V  H  V  C  L  C  V  V  L  N  Q  C  S  H  T  V  N  R  Y  V  Q  *  V  E  K  V  L  F  C  L  R  Y  S  L  S  C  L  L  S  Q  C  A  H  I  V  N  R  H  V  Q  *  V  E  E  T  L  F  C  L  R  Y  P  L  S  C  L  H  F  A  S  L  V  E  L  H  Q  F  L  L  L  I  A  I  L  *  T  Y  *  C  I  L  G  H  A  M  H  I  A  T  *  *  </second_frame>
            <third_frame>   F  H  S  F  H  C  L  Y  S  S  S  F  L  L  S  P  P  I  F  P  I  T  N  T  T  F  F  C  F  *  L  K  V  F  I  F  S  I  L  D  *  I  T  C  F  G  F  S  *  F  L  Q  G  F  S  F  L  S  D  *  P  F  W  G  Y  F  R  I  L  K  S  S  E  F  S  S  *  K  A  S  R  H  Y  F  F  N  F  S  C  V  K  L  K  W  V  C  L  E  L  V  L  G  G  K  E  L  S  N  K  R  *  K  D  E  D  T  V  *  C  V  *  E  S  S  S  Y  C  D  L  L  C  *  *  G  C  S  V  C  K  M  *  Y  *  S  S  C  C  *  *  I  S  K  Q  A  P  K  A  S  S  S  V  P  I  *  Q  A  S  S  L  *  Y  L  P   : R  *  S  S  L  H  L  L  C  *  G  *  S  S  L  L  Q  G  L  *  R  S  N  S  F  S  Q  Q  P  R  *  E  P  P  T  L  L  S  H  W  N  P  C  S  L  E  L  K  L  *  *  G  I :   S  C  P  V  *  H  H  H  L  G  L  S  M  I  Y  *  D  F  Q  I  M  S  R  V  T  R :   R  I  Y  L  S  L  V  N  L  S  G  *  G  A  L  I  S  L  V  N  K  Q  Q  L  K  C  P  S  Y  Q  Y  L  S  R  A  I  Q  I  F  T  G  Q  P  N  I  K  C  L  T  R  S  P  E  L  K  S  Q  M  M  M  S  I  L  L  S  P  I  L  V  E  L  Q  L  Q  E  V  S  N  *  M  C  M  C  A  C  V  *  Y  L  I  S  A  L  I  L  S  T  D  M  F  S  K  *  K  K  Y  C  S  A  *  D  T  P  Y  L  A  Y  F  R  S  A  L  I  L  S  T  D  M  F  S  K  *  R  K  H  Y  S  A  *  D  I  L  Y  L  A  Y  I  S  P  P  W  *  N  C  I  N  F  F  F  L  *  Q  F  Y  K  H  I  D  A  F  L  D  M  L  C  I  L  L  H  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49077" stop="49277"/>
                    <exon start="50788" stop="50944"/>
                    <exon start="51019" stop="51059"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIKDKKMKIQCDVCEKAQATVICCADEAALCAKCDIEVHAANKLASKHQRLHLQCLSNKLPPCDICQDKAAFIFCVEDRALFCKDCDEAIHSASSLAKNHQRFLATGIRVALSSSCNKESVVLYNITILACR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50924" stop="50944"/>
                    <exon start="51019" stop="51096"/>
                    <exon start="51477" stop="51686"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQAVIRNQLSCITSPSWPVDDLLGFPDYESSDKKDLLELGEFEWLGGIDLFGEQTAAEVPELSVPQSSNTNIYRTTKYQMPYKKSRIEIPDDDEYFTVPDLG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51746" stop="52018"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVLSYCQQICSVSRKSIVLLKILLILLTFAVRSYCQQTCSVSRGNTILLKISFILLTFRLLGRIASISSSYSNFINILMHSWTCYAYCYIV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="48756" e_stop="49277"/>
            <exon e_start="50788" e_stop="50913"/>
            <exon e_start="50995" e_stop="51096"/>
            <exon e_start="51477" e_stop="51809"/>
            <exon e_start="52536" e_stop="52578"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.935" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.980"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.605"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48756" e_stop="49277" e_length="522"/>
          </exon>
          <intron i_serial="1" don_prob="0.935" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50788" e_stop="50913" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50914" i_stop="50994" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="50995" e_stop="51096" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="51477" e_stop="51809" e_length="333"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="51810" i_stop="52535" i_length="726"/>
          </intron>
          <exon e_serial="5" e_score="0.605">
            <gDNA_exon_boundary e_start="52536" e_stop="52578" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48756" stop="49165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48758" stop="49277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48759" stop="49277"/>
              <exon start="50788" stop="50910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48760" stop="49197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48764" stop="49277"/>
              <exon start="50788" stop="50862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48764" stop="49277"/>
              <exon start="50788" stop="50846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48764" stop="49277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48764" stop="48991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48771" stop="49277"/>
              <exon start="50788" stop="50859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48772" stop="49246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48774" stop="49119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48826" stop="49277"/>
              <exon start="50788" stop="50909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48842" stop="49277"/>
              <exon start="50788" stop="50836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48842" stop="49277"/>
              <exon start="50788" stop="50828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48842" stop="49079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48844" stop="49277"/>
              <exon start="50788" stop="50861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50841" stop="50913"/>
              <exon start="50995" stop="51096"/>
              <exon start="51477" stop="51809"/>
              <exon start="52536" stop="52578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50841" stop="50913"/>
              <exon start="50995" stop="51096"/>
              <exon start="51477" stop="51808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51609" stop="51808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220234" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCCACTCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA : GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGT : GTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG : AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGA : ATGGAAAAAAGAAAAAAGATAACACGATGTTTCTATGCTCCTC</gDNA_template>
            <first_frame> S  S  T  H  F  I  V  Y  I  L  L  L  F  Y  F  L  L  P  F  F  P  L  Q  T  L  H  F  S  V  F  D  *  K  F  S  F  L  V  F  W  T  K  S  P  A  L  G  F  L  D  F  C  R  V  F  L  F  C  L  T  D  P  F  G  G  I  F  E  S  *  K  V  L  S  S  L  H  K  K  L  Q  D  T  I  F  S  I  F  L  V  *  N  S  N  G  Y  V  L  N  *  C  *  E  A  K  S  *  V  I  K  D  K  K  M  K  I  Q  C  D  V  C  E  K  A  Q  A  T  V  I  C  C  A  D  E  A  A  L  C  A  K  C  D  I  E  V  H  A  A  N  K  L  A  S  K  H  Q  R  L  H  L  Q  C  L  S  N  K  L  P  P  C  D  I  C  Q  :  D  K  A  A  F  I  F  C  V  E  D  R  A  L  F  C  K  D  C  D  E  A  I  H  S  A  S  S  L  A  K  N  H  Q  R  F  L  A  T  G  I  R  :  V  G  L  K  M  P  P  Q  Q  L  S  C  I  T  S  P  S  W  P  V  D  D  L  L  G  F  P  D  Y  E  S  S  D  K  :  K  D  L  L  E  L  G  E  F  E  W  L  G  G  I  D  L  F  G  E  Q  T  A  A  E  V  P  E  L  S  V  P  Q  S  S  N  T  N  I  Y  R  T  T  K  Y  Q  M  P  Y  K  K  S  R  I  E  I  P  D  D  D  E  Y  F  T  V  P  D  L  G  *  T  P  T  S  R  S  F  Q  L  N  V  H  V  C  L  C  V  V  L  N  Q  C  S  H  T  V  N  R  Y  V  Q  *  V  E  K  V  L  F  C  L  R  :  M  E  K  R  K  K  I  T  R  C  F  Y  A  P  </first_frame>
            <second_frame>  L  P  L  I  S  L  S  I  F  F  F  F  S  T  F  S  S  H  F  S  H  Y  K  H  Y  I  F  L  F  L  I  E  S  F  H  F  *  Y  F  G  L  N  H  L  L  W  V  F  L  I  F  A  G  F  F  F  F  V  *  L  T  L  L  G  V  F  S  N  L  E  K  F  *  V  L  F  I  K  S  F  K  T  L  F  F  Q  F  F  L  C  E  T  Q  M  G  M  S  *  I  S  V  R  R  Q  R  V  K  *  *  K  I  K  R  *  R  Y  S  V  M  C  V  R  K  L  K  L  L  *  F  A  V  L  M  R  L  L  C  V  Q  N  V  I  L  K  F  M  L  L  I  N  *  Q  A  S  T  K  G  F  I  F  S  A  Y  L  T  S  F  L  L  V  I  F  A  K :   I  K  Q  P  S  S  S  V  L  R  I  E  L  S  F  A  R  T  V  T  K  Q  F  I  Q  P  A  A  S  L  R  T  T  N  A  S  *  P  L  E  S  V :   L  A  *  K  C  L  H  S  S  C  P  V  *  H  H  H  L  G  L  S  M  I  Y  *  D  F  Q  I  M  S  R  V  T  R :   R  I  Y  L  S  L  V  N  L  S  G  *  G  A  L  I  S  L  V  N  K  Q  Q  L  K  C  P  S  Y  Q  Y  L  S  R  A  I  Q  I  F  T  G  Q  P  N  I  K  C  L  T  R  S  P  E  L  K  S  Q  M  M  M  S  I  L  L  S  P  I  L  V  E  L  Q  L  Q  E  V  S  N  *  M  C  M  C  A  C  V  *  Y  L  I  S  A  L  I  L  S  T  D  M  F  S  K  *  K  K  Y  C  S  A  *  E :   W  K  K  E  K  R  *  H  D  V  S  M  L  L </second_frame>
            <third_frame>   F  H  S  F  H  C  L  Y  S  S  S  F  L  L  S  P  P  I  F  P  I  T  N  T  T  F  F  C  F  *  L  K  V  F  I  F  S  I  L  D  *  I  T  C  F  G  F  S  *  F  L  Q  G  F  S  F  L  S  D  *  P  F  W  G  Y  F  R  I  L  K  S  S  E  F  S  S  *  K  A  S  R  H  Y  F  F  N  F  S  C  V  K  L  K  W  V  C  L  E  L  V  L  G  G  K  E  L  S  N  K  R  *  K  D  E  D  T  V  *  C  V  *  E  S  S  S  Y  C  D  L  L  C  *  *  G  C  S  V  C  K  M  *  Y  *  S  S  C  C  *  *  I  S  K  Q  A  P  K  A  S  S  S  V  P  I  *  Q  A  S  S  L  *  Y  L  P   : R  *  S  S  L  H  L  L  C  *  G  *  S  S  L  L  Q  G  L  *  R  S  N  S  F  S  Q  Q  P  R  *  E  P  P  T  L  L  S  H  W  N  P   : C  W  L  E  N  A  S  T  A  V  V  L  Y  N  I  T  I  L  A  C  R  *  F  T  R  I  S  R  L  *  V  E  *  Q   : E  G  S  T  *  A  W  *  I  *  V  V  R  G  H  *  S  L  W  *  T  N  S  S  *  S  A  R  A  I  S  T  S  V  E  Q  Y  K  Y  L  Q  D  N  Q  I  S  N  A  L  Q  E  V  Q  N  *  N  P  R  *  *  *  V  F  Y  C  P  R  S  W  L  N  S  N  F  K  K  F  P  I  K  C  A  C  V  L  V  C  S  T  *  S  V  L  S  Y  C  Q  Q  I  C  S  V  S  R  K  S  I  V  L  L  K   : N  G  K  K  K  K  D  N  T  M  F  L  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49077" stop="49277"/>
                    <exon start="50788" stop="50913"/>
                    <exon start="50995" stop="51096"/>
                    <exon start="51477" stop="51686"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIKDKKMKIQCDVCEKAQATVICCADEAALCAKCDIEVHAANKLASKHQRLHLQCLSNKLPPCDICQDKAAFIFCVEDRALFCKDCDEAIHSASSLAKNHQRFLATGIRVGLKMPPQQLSCITSPSWPVDDLLGFPDYESSDKKDLLELGEFEWLGGIDLFGEQTAAEVPELSVPQSSNTNIYRTTKYQMPYKKSRIEIPDDDEYFTVPDLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="51121" e_stop="52020"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="51121" e_stop="52020" e_length="900"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51121" stop="51808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51496" stop="51865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51555" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51558" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51562" stop="51895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51609" stop="51808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51612" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51626" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51628" stop="51895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51638" stop="51863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51701" stop="52020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308522" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTACATTTCGCCTCCTTGGTAGAATTGCATCAATTTCTTCTTCTTATAGCAATTTTATAAACATATTGATGCATTCTTGGACATGCTATGCATATTGCTACATAGTAAA</gDNA_template>
            <first_frame> F  A  S  I  L  Y  F  L  P  L  G  L  V  A  G  G  L  T  Y  R  G  L  L  *  M  R  S  Y  R  F  S  W  *  C  S  L  C  I  A  L  N  L  N  L  K  H  S  N  M  Q  N  D  F  L  R  F  L  D  T  *  G  D  I  L  *  H  H  Y  M  Y  I  R  S  W  P  W  V  Y  S  G  V  S  L  I  C  E  T  V  V  T  I  D  S  V  Y  Y  G  V  I  V  C  S  S  N  M  *  *  I  T  Y  I  L  V  V  S  I  *  Y  R  R  I  Y  L  S  L  V  N  L  S  G  *  G  A  L  I  S  L  V  N  K  Q  Q  L  K  C  P  S  Y  Q  Y  L  S  R  A  I  Q  I  F  T  G  Q  P  N  I  K  C  L  T  R  S  P  E  L  K  S  Q  M  M  M  S  I  L  L  S  P  I  L  V  E  L  Q  L  Q  E  V  S  N  *  M  C  M  C  A  C  V  *  Y  L  I  S  A  L  I  L  S  T  D  M  F  S  K  *  K  K  Y  C  S  A  *  D  T  P  Y  L  A  Y  F  R  S  A  L  I  L  S  T  D  M  F  S  K  *  R  K  H  Y  S  A  *  D  I  L  Y  L  A  Y  I  S  P  P  W  *  N  C  I  N  F  F  F  L  *  Q  F  Y  K  H  I  D  A  F  L  D  M  L  C  I  L  L  H  S  K </first_frame>
            <second_frame>  L  Q  V  S  Y  I  F  Y  H  L  G  W  W  L  A  D  *  R  I  E  D  F  S  R  *  E  A  I  D  F  L  G  N  A  A  Y  A  *  H  *  T  *  I  *  N  T  Q  I  C  K  T  T  S  L  D  S  S  I  H  R  E  T  F  Y  D  T  I  T  C  I  Y  E  V  G  L  G  Y  I  P  V  S  V  *  Y  V  K  L  W  *  P  L  I  Q  Y  I  T  V  S  L  S  V  H  L  I  C  N  E  *  P  I  Y  W  L  F  Q  S  N  T  E  G  S  T  *  A  W  *  I  *  V  V  R  G  H  *  S  L  W  *  T  N  S  S  *  S  A  R  A  I  S  T  S  V  E  Q  Y  K  Y  L  Q  D  N  Q  I  S  N  A  L  Q  E  V  Q  N  *  N  P  R  *  *  *  V  F  Y  C  P  R  S  W  L  N  S  N  F  K  K  F  P  I  K  C  A  C  V  L  V  C  S  T  *  S  V  L  S  Y  C  Q  Q  I  C  S  V  S  R  K  S  I  V  L  L  K  I  L  L  I  L  L  T  F  A  V  R  S  Y  C  Q  Q  T  C  S  V  S  R  G  N  T  I  L  L  K  I  S  F  I  L  L  T  F  R  L  L  G  R  I  A  S  I  S  S  S  Y  S  N  F  I  N  I  L  M  H  S  W  T  C  Y  A  Y  C  Y  I  V   </second_frame>
            <third_frame>   C  K  Y  P  I  F  S  T  T  W  V  G  G  W  R  I  D  V  *  R  T  S  L  D  E  K  L  S  I  F  L  V  M  Q  L  M  H  S  I  E  L  E  F  E  T  L  K  Y  A  K  R  L  P  *  I  P  R  Y  I  G  R  H  F  M  T  P  L  H  V  Y  T  K  L  A  L  G  I  F  R  C  Q  S  N  M  *  N  C  G  D  H  *  F  S  I  L  R  C  H  C  L  F  I  *  Y  V  M  N  N  L  Y  I  G  C  F  N  L  I  Q  K  D  L  L  E  L  G  E  F  E  W  L  G  G  I  D  L  F  G  E  Q  T  A  A  E  V  P  E  L  S  V  P  Q  S  S  N  T  N  I  Y  R  T  T  K  Y  Q  M  P  Y  K  K  S  R  I  E  I  P  D  D  D  E  Y  F  T  V  P  D  L  G  *  T  P  T  S  R  S  F  Q  L  N  V  H  V  C  L  C  V  V  L  N  Q  C  S  H  T  V  N  R  Y  V  Q  *  V  E  K  V  L  F  C  L  R  Y  S  L  S  C  L  L  S  Q  C  A  H  I  V  N  R  H  V  Q  *  V  E  E  T  L  F  C  L  R  Y  P  L  S  C  L  H  F  A  S  L  V  E  L  H  Q  F  L  L  L  I  A  I  L  *  T  Y  *  C  I  L  G  H  A  M  H  I  A  T  *  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51746" stop="52018"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVLSYCQQICSVSRKSIVLLKILLILLTFAVRSYCQQTCSVSRGNTILLKISFILLTFRLLGRIASISSSYSNFINILMHSWTCYAYCYIV</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51432" stop="51686"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVMNNLYIGCFNLIQKDLLELGEFEWLGGIDLFGEQTAAEVPELSVPQSSNTNIYRTTKYQMPYKKSRIEIPDDDEYFTVPDLG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="6" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51514" stop="51714"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GALISLVNKQQLKCPSYQYLSRAIQIFTGQPNIKCLTRSPELKSQMMMSILLSPILVELQLQEVSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="48756" e_stop="49667"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="48756" e_stop="49667" e_length="912"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48756" stop="49165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48758" stop="49277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48760" stop="49197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48764" stop="49277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48764" stop="48991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48772" stop="49246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48774" stop="49119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48794" stop="49667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48842" stop="49079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240012" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCCACTCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATT</gDNA_template>
            <first_frame> S  S  T  H  F  I  V  Y  I  L  L  L  F  Y  F  L  L  P  F  F  P  L  Q  T  L  H  F  S  V  F  D  *  K  F  S  F  L  V  F  W  T  K  S  P  A  L  G  F  L  D  F  C  R  V  F  L  F  C  L  T  D  P  F  G  G  I  F  E  S  *  K  V  L  S  S  L  H  K  K  L  Q  D  T  I  F  S  I  F  L  V  *  N  S  N  G  Y  V  L  N  *  C  *  E  A  K  S  *  V  I  K  D  K  K  M  K  I  Q  C  D  V  C  E  K  A  Q  A  T  V  I  C  C  A  D  E  A  A  L  C  A  K  C  D  I  E  V  H  A  A  N  K  L  A  S  K  H  Q  R  L  H  L  Q  C  L  S  N  K  L  P  P  C  D  I  C  Q  V  R  E  L  L  L  F  V  A  L  F  M  E  *  F  V  F  S  L  D  C  V  T  N  I  S  M  W  *  L  C  C  S  L  I  N  G  K  L  T  C  V  P  S  H  W  F  G  L  W  T  F  N  M  E  V  *  S  A  F  W  V  N  L  S  A  P  D  L  P  S  A  N  Y  I  F  H  V  V  C  K  L  L  Y  R  N  G  V  C  K  L  L  N  K  S  G  V  S  P  Y  A  H  S  R  A  A  A  A  G  F  L  V  I  K  K  V  G  K  L  T  C  D  V  P  F  D  *  T  L  I </first_frame>
            <second_frame>  L  P  L  I  S  L  S  I  F  F  F  F  S  T  F  S  S  H  F  S  H  Y  K  H  Y  I  F  L  F  L  I  E  S  F  H  F  *  Y  F  G  L  N  H  L  L  W  V  F  L  I  F  A  G  F  F  F  F  V  *  L  T  L  L  G  V  F  S  N  L  E  K  F  *  V  L  F  I  K  S  F  K  T  L  F  F  Q  F  F  L  C  E  T  Q  M  G  M  S  *  I  S  V  R  R  Q  R  V  K  *  *  K  I  K  R  *  R  Y  S  V  M  C  V  R  K  L  K  L  L  *  F  A  V  L  M  R  L  L  C  V  Q  N  V  I  L  K  F  M  L  L  I  N  *  Q  A  S  T  K  G  F  I  F  S  A  Y  L  T  S  F  L  L  V  I  F  A  K  *  G  N  F  F  F  L  L  P  C  S  W  N  N  L  F  L  V  *  I  V  L  L  I  F  Q  C  G  S  C  V  A  P  *  L  M  E  S  *  L  V  Y  P  P  T  G  L  G  F  G  L  S  T  W  K  S  E  V  P  S  G  S  I  S  V  H  R  T  C  L  V  L  I  T  S  S  M  W  F  A  S  Y  Y  I  G  T  G  F  A  S  C  *  I  R  A  G  L  A  P  M  R  T  Q  G  Q  R  L  R  V  S  L  S  *  K  K  L  E  S  *  L  V  M  F  L  L  I  R  L  *   </second_frame>
            <third_frame>   F  H  S  F  H  C  L  Y  S  S  S  F  L  L  S  P  P  I  F  P  I  T  N  T  T  F  F  C  F  *  L  K  V  F  I  F  S  I  L  D  *  I  T  C  F  G  F  S  *  F  L  Q  G  F  S  F  L  S  D  *  P  F  W  G  Y  F  R  I  L  K  S  S  E  F  S  S  *  K  A  S  R  H  Y  F  F  N  F  S  C  V  K  L  K  W  V  C  L  E  L  V  L  G  G  K  E  L  S  N  K  R  *  K  D  E  D  T  V  *  C  V  *  E  S  S  S  Y  C  D  L  L  C  *  *  G  C  S  V  C  K  M  *  Y  *  S  S  C  C  *  *  I  S  K  Q  A  P  K  A  S  S  S  V  P  I  *  Q  A  S  S  L  *  Y  L  P  S  K  G  T  S  S  F  C  C  P  V  H  G  I  I  C  F  *  S  R  L  C  Y  *  Y  F  N  V  V  V  V  L  L  L  D  *  W  K  V  N  L  C  T  L  P  L  V  W  A  L  D  F  Q  H  G  S  L  K  C  L  L  G  Q  S  Q  C  T  G  L  A  *  C  *  L  H  L  P  C  G  L  Q  A  I  I  *  E  R  G  L  Q  A  V  K  *  E  R  G  *  P  L  C  A  L  K  G  S  G  C  G  F  P  C  H  K  K  S  W  K  V  N  L  *  C  S  F  *  L  D  S  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49077" stop="49319"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIKDKKMKIQCDVCEKAQATVICCADEAALCAKCDIEVHAANKLASKHQRLHLQCLSNKLPPCDICQVRELLLFVALFME*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="7" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49449" stop="49658"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAFWVNLSAPDLPSANYIFHVVCKLLYRNGVCKLLNKSGVSPYAHSRAAAAGFLVIKKVGKLTCDVPFD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="54985" PGL_stop="52270"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54985" e_stop="54464"/>
            <exon e_start="53536" e_stop="53204"/>
            <exon e_start="52900" e_stop="52784"/>
            <exon e_start="52699" e_stop="52270"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54985" e_stop="54464" e_length="522"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.976">
            <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53536" e_stop="53204" e_length="333"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52900" e_stop="52784" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52699" e_stop="52270" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54985" stop="54464"/>
              <exon start="53536" stop="53501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54965" stop="54464"/>
              <exon start="53536" stop="53211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54949" stop="54464"/>
              <exon start="53536" stop="53382"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E216331" strand="+"/>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52655" stop="52270"/>
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            <referenceDNA id="SGN-E303624" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E304591" strand="+"/>
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        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTATATAAAGCTCCTTATAATTTTCACTTATCCTCCTCTTCTTCTCTCTGTTATACTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT : GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG : AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG : GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCATATGCAGCTTCCTTGTAACTTCTCCTTTACATCATCATACTAGTATTTCATTATCCAATTCTATATTCTAGTAGACATAGTTTTCACCTATTTCATTTGTCATCAAATCCTAGTAAAGTTGGGAATTTTGCCCAAGAGTTC</gDNA_template>
            <first_frame> F  Y  I  K  L  L  I  I  F  T  Y  P  P  L  L  L  S  V  I  L  Y  K  N  L  *  I  H  L  *  I  H  I  F  S  L  F  I  V  A  M  A  V  N  G  A  S  S  S  G  L  I  V  S  F  G  E  M  L  I  D  F  V  P  T  V  S  G  V  S  L  A  E  A  P  G  F  L  K  A  P  G  G  A  P  A  N  V  A  I  A  V  T  R  L  G  G  K  S  A  F  V  G  K  L  G  D  D  E  F  G  H  M  L  A  G  I  L  K  T  N  G  V  Q  A  E  G  I  N  F  D  K  G  A  R  T  A  L  A  F  V  T  L  R  A  D  G  E  R  E  F  M  F  Y  R  N  P  S  A  D  M  L  L  T  P  A  E  L  N  L  D  L  I  R  S  :  A  K  V  F  H  Y  G  S  I  S  L  I  V  E  P  C  R  A  A  H  M  K  A  M  E  V  A  K  E  A  G  A  L  L  S  Y  D  P  N  L  R  L  P  L  W  P  S  A  E  E  A  K  K  Q  I  K  S  I  W  D  S  A  D  V  I  K  V  S  D  V  E  L  E  F  L  T  G  S  N  K  I  D  D  E  S  A  M  S  L  W  H  P  N  L  K  L  L  L  V  T  L  G  E  K  G  C  N  Y  Y  T  K  :  K  F  H  G  T  V  G  G  F  H  V  K  T  V  D  T  T  G  A  G  D  S  F  V  G  A  L  L  T  K  I  V  D  D  Q  T  I  L  E  :  D  E  A  R  L  K  E  V  L  R  F  S  C  A  C  G  A  I  T  T  T  K  K  G  A  I  P  A  L  P  T  A  S  E  A  L  T  L  L  K  G  G  A  *  K  H  R  V  I  F  F  L  F  S  I  F  I  Y  F  P  P  F  M  S  F  F  E  A  S  R  K  P  F  Q  F  W  I  L  M  F  C  C  D  E  C  P  S  R  H  L  I  N  *  A  F  F  I  C  S  F  L  V  T  S  P  L  H  H  H  T  S  I  S  L  S  N  S  I  F  *  *  T  *  F  S  P  I  S  F  V  I  K  S  *  *  S  W  E  F  C  P  R  V  </first_frame>
            <second_frame>  S  I  *  S  S  L  *  F  S  L  I  L  L  F  F  S  L  L  Y  Y  I  K  I  Y  R  Y  T  Y  R  Y  I  Y  F  L  Y  S  S  *  P  W  Q  L  T  V  L  L  L  L  V  *  S  S  V  S  V  R  C  *  S  I  S  F  R  Q  S  P  A  Y  P  L  P  R  L  P  D  F  *  K  L  P  A  V  H  R  R  T  S  L  S  R  *  R  G  S  E  G  S  R  R  S  S  G  N  S  A  T  M  S  S  V  T  C  S  P  G  F  *  K  R  T  A  Y  K  P  K  E  L  I  L  T  R  A  P  G  R  L  W  R  S  *  R  Y  A  P  T  E  S  V  S  L  C  F  T  E  I  P  V  P  I  C  C  S  R  P  L  S  *  I  L  I  L  L  D  L :   L  R  C  S  T  M  D  Q  L  V  *  S  W  S  H  V  E  Q  H  I  *  R  Q  W  K  *  Q  R  R  Q  G  H  C  S  L  M  T  Q  T  F  V  C  R  C  G  L  Q  Q  K  R  P  R  S  K  S  R  A  Y  G  T  L  L  M  *  S  R  S  A  M  W  S  S  N  S  S  L  E  A  T  R  L  M  M  N  P  P  C  P  C  G  I  L  T  *  S  Y  S  W  S  L  L  V  K  R  V  A  I  T  T  P  R :   N  S  M  E  P  L  E  D  S  M  *  R  L  L  T  P  L  E  L  V  I  L  L  L  V  P  F  *  P  R  L  L  M  I  K  P  F  S  R :   M  K  Q  G  *  R  K  Y  L  G  F  H  V  H  V  E  P  S  L  Q  P  R  K  E  Q  S  Q  L  C  L  L  H  L  K  P  S  L  C  S  R  E  E  H  R  N  I  V  L  S  F  F  F  F  P  S  S  Y  I  S  P  P  L  *  V  F  L  K  L  V  G  S  L  F  S  F  G  F  *  C  F  V  V  M  N  V  H  Q  D  T  *  *  T  K  L  S  S  Y  A  A  S  L  *  L  L  L  Y  I  I  I  L  V  F  H  Y  P  I  L  Y  S  S  R  H  S  F  H  L  F  H  L  S  S  N  P  S  K  V  G  N  F  A  Q  E  F </second_frame>
            <third_frame>   L  Y  K  A  P  Y  N  F  H  L  S  S  S  S  S  L  C  Y  T  I  *  K  S  I  D  T  P  I  D  T  Y  I  F  S  I  H  R  S  H  G  S  *  R  C  F  F  F  W  F  D  R  Q  F  R  *  D  V  D  R  F  R  S  D  S  L  R  R  I  P  C  R  G  S  R  I  F  E  S  S  R  R  C  T  G  E  R  R  Y  R  G  D  E  A  R  R  E  V  G  V  R  R  E  T  R  R  R  *  V  R  S  H  A  R  R  D  S  E  N  E  R  R  T  S  R  R  N  *  F  *  Q  G  R  Q  D  G  F  G  V  R  D  A  T  R  R  R  R  A  *  V  Y  V  L  Q  K  S  Q  C  R  Y  V  A  H  A  R  *  V  E  S  *  S  Y  *  I   : C  *  G  V  P  L  W  I  N  *  F  D  R  G  A  M  *  S  S  T  Y  E  G  N  G  S  S  K  G  G  R  G  I  A  L  L  *  P  K  P  S  F  A  V  V  A  F  S  R  R  G  Q  E  A  N  Q  E  H  M  G  L  C  *  C  D  Q  G  Q  R  C  G  A  R  I  P  H  W  K  Q  Q  D  *  *  *  I  R  H  V  L  V  A  S  *  L  E  A  T  L  G  H  S  W  *  K  G  L  Q  L  L  H  Q   : E  I  P  W  N  R  W  R  I  P  C  E  D  C  *  H  H  W  S  W  *  F  F  C  W  C  P  S  N  Q  D  C  *  *  S  N  H  S  R   : G  *  S  K  V  E  G  S  T  *  V  F  M  C  M  W  S  H  H  Y  N  Q  E  R  S  N  P  S  F  A  Y  C  I  *  S  P  H  F  A  Q  G  R  S  I  E  T  S  C  Y  L  F  S  F  F  H  L  H  I  F  P  P  L  Y  E  F  F  *  S  *  *  E  A  F  S  V  L  D  F  N  V  L  L  *  *  M  S  I  K  T  L  N  K  L  S  F  L  H  M  Q  L  P  C  N  F  S  F  T  S  S  Y  *  Y  F  I  I  Q  F  Y  I  L  V  D  I  V  F  T  Y  F  I  C  H  Q  I  L  V  K  L  G  I  L  P  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54898" stop="54464"/>
                    <exon start="53536" stop="53204"/>
                    <exon start="52900" stop="52784"/>
                    <exon start="52699" stop="52568"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1014</number_coding_nucleotides>
                  <number_encoded_amino_acids>338</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IHIFSLFIVAMAVNGASSSGLIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVTRLGGKSAFVGKLGDDEFGHMLAGILKTNGVQAEGINFDKGARTALAFVTLRADGEREFMFYRNPSADMLLTPAELNLDLIRSAKVFHYGSISLIVEPCRAAHMKAMEVAKEAGALLSYDPNLRLPLWPSAEEAKKQIKSIWDSADVIKVSDVELEFLTGSNKIDDESAMSLWHPNLKLLLVTLGEKGCNYYTKKFHGTVGGFHVKTVDTTGAGDSFVGALLTKIVDDQTILEDEARLKEVLRFSCACGAITTTKKGAIPALPTASEALTLLKGGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="53704" e_stop="53204"/>
            <exon e_start="52900" e_stop="52784"/>
            <exon e_start="52699" e_stop="52270"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.998"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="53704" e_stop="53204" e_length="501"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52900" e_stop="52784" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52699" e_stop="52270" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53704" stop="53208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53536" stop="53204"/>
              <exon start="52900" stop="52784"/>
              <exon start="52699" stop="52411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53514" stop="53204"/>
              <exon start="52900" stop="52784"/>
              <exon start="52699" stop="52412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577976" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53483" stop="53204"/>
              <exon start="52900" stop="52784"/>
              <exon start="52699" stop="52403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53463" stop="53204"/>
              <exon start="52900" stop="52784"/>
              <exon start="52699" stop="52590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53458" stop="53204"/>
              <exon start="52900" stop="52784"/>
              <exon start="52699" stop="52510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53451" stop="53204"/>
              <exon start="52900" stop="52784"/>
              <exon start="52699" stop="52415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53437" stop="53204"/>
              <exon start="52900" stop="52784"/>
              <exon start="52699" stop="52480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53437" stop="53204"/>
              <exon start="52900" stop="52784"/>
              <exon start="52699" stop="52480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53436" stop="53204"/>
              <exon start="52900" stop="52784"/>
              <exon start="52699" stop="52497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53313" stop="53204"/>
              <exon start="52900" stop="52784"/>
              <exon start="52699" stop="52328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53277" stop="53204"/>
              <exon start="52900" stop="52784"/>
              <exon start="52699" stop="52345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53277" stop="53204"/>
              <exon start="52900" stop="52784"/>
              <exon start="52699" stop="52397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53276" stop="53204"/>
              <exon start="52900" stop="52784"/>
              <exon start="52699" stop="52397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53232" stop="53204"/>
              <exon start="52900" stop="52784"/>
              <exon start="52699" stop="52412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52900" stop="52784"/>
              <exon start="52699" stop="52412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52835" stop="52784"/>
              <exon start="52699" stop="52397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52665" stop="52412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52656" stop="52274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52655" stop="52270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52625" stop="52411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304591" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG : AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG : GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCATATGCAGCTTCCTTGTAACTTCTCCTTTACATCATCATACTAGTATTTCATTATCCAATTCTATATTCTAGTAGACATAGTTTTCACCTATTTCATTTGTCATCAAATCCTAGTAAAGTTGGGAATTTTGCCCAAGAGTTC</gDNA_template>
            <first_frame> I  V  *  S  V  S  K  S  S  G  A  K  R  G  R  W  G  S  I  V  K  F  M  S  G  V  I  I  M  E  S  V  I  N  C  S  S  Q  T  N  *  F  L  Y  G  L  *  F  N  L  *  I  L  C  I  *  A  K  V  F  H  Y  G  S  I  S  L  I  V  E  P  C  R  A  A  H  M  K  A  M  E  V  A  K  E  A  G  A  L  L  S  Y  D  P  N  L  R  L  P  L  W  P  S  A  E  E  A  K  K  Q  I  K  S  I  W  D  S  A  D  V  I  K  V  S  D  V  E  L  E  F  L  T  G  S  N  K  I  D  D  E  S  A  M  S  L  W  H  P  N  L  K  L  L  L  V  T  L  G  E  K  G  C  N  Y  Y  T  K  :  K  F  H  G  T  V  G  G  F  H  V  K  T  V  D  T  T  G  A  G  D  S  F  V  G  A  L  L  T  K  I  V  D  D  Q  T  I  L  E  :  D  E  A  R  L  K  E  V  L  R  F  S  C  A  C  G  A  I  T  T  T  K  K  G  A  I  P  A  L  P  T  A  S  E  A  L  T  L  L  K  G  G  A  *  K  H  R  V  I  F  F  L  F  S  I  F  I  Y  F  P  P  F  M  S  F  F  E  A  S  R  K  P  F  Q  F  W  I  L  M  F  C  C  D  E  C  P  S  R  H  L  I  N  *  A  F  F  I  C  S  F  L  V  T  S  P  L  H  H  H  T  S  I  S  L  S  N  S  I  F  *  *  T  *  F  S  P  I  S  F  V  I  K  S  *  *  S  W  E  F  C  P  R  V  </first_frame>
            <second_frame>  *  Y  R  V  Y  R  N  R  V  E  P  K  G  V  G  G  E  V  *  L  N  S  C  Q  V  S  L  S  W  S  Q  S  L  I  V  A  H  K  L  I  N  F  C  M  D  Y  S  L  I  C  E  F  C  V  Y  R  L  R  C  S  T  M  D  Q  L  V  *  S  W  S  H  V  E  Q  H  I  *  R  Q  W  K  *  Q  R  R  Q  G  H  C  S  L  M  T  Q  T  F  V  C  R  C  G  L  Q  Q  K  R  P  R  S  K  S  R  A  Y  G  T  L  L  M  *  S  R  S  A  M  W  S  S  N  S  S  L  E  A  T  R  L  M  M  N  P  P  C  P  C  G  I  L  T  *  S  Y  S  W  S  L  L  V  K  R  V  A  I  T  T  P  R :   N  S  M  E  P  L  E  D  S  M  *  R  L  L  T  P  L  E  L  V  I  L  L  L  V  P  F  *  P  R  L  L  M  I  K  P  F  S  R :   M  K  Q  G  *  R  K  Y  L  G  F  H  V  H  V  E  P  S  L  Q  P  R  K  E  Q  S  Q  L  C  L  L  H  L  K  P  S  L  C  S  R  E  E  H  R  N  I  V  L  S  F  F  F  F  P  S  S  Y  I  S  P  P  L  *  V  F  L  K  L  V  G  S  L  F  S  F  G  F  *  C  F  V  V  M  N  V  H  Q  D  T  *  *  T  K  L  S  S  Y  A  A  S  L  *  L  L  L  Y  I  I  I  L  V  F  H  Y  P  I  L  Y  S  S  R  H  S  F  H  L  F  H  L  S  S  N  P  S  K  V  G  N  F  A  Q  E  F </second_frame>
            <third_frame>   S  I  E  C  I  E  I  E  W  S  Q  K  G  *  V  G  K  Y  S  *  I  H  V  R  C  H  Y  H  G  V  S  H  *  L  *  L  T  N  *  L  I  F  V  W  I  I  V  *  F  V  N  F  V  Y  I  G  *  G  V  P  L  W  I  N  *  F  D  R  G  A  M  *  S  S  T  Y  E  G  N  G  S  S  K  G  G  R  G  I  A  L  L  *  P  K  P  S  F  A  V  V  A  F  S  R  R  G  Q  E  A  N  Q  E  H  M  G  L  C  *  C  D  Q  G  Q  R  C  G  A  R  I  P  H  W  K  Q  Q  D  *  *  *  I  R  H  V  L  V  A  S  *  L  E  A  T  L  G  H  S  W  *  K  G  L  Q  L  L  H  Q   : E  I  P  W  N  R  W  R  I  P  C  E  D  C  *  H  H  W  S  W  *  F  F  C  W  C  P  S  N  Q  D  C  *  *  S  N  H  S  R   : G  *  S  K  V  E  G  S  T  *  V  F  M  C  M  W  S  H  H  Y  N  Q  E  R  S  N  P  S  F  A  Y  C  I  *  S  P  H  F  A  Q  G  R  S  I  E  T  S  C  Y  L  F  S  F  F  H  L  H  I  F  P  P  L  Y  E  F  F  *  S  *  *  E  A  F  S  V  L  D  F  N  V  L  L  *  *  M  S  I  K  T  L  N  K  L  S  F  L  H  M  Q  L  P  C  N  F  S  F  T  S  S  Y  *  Y  F  I  I  Q  F  Y  I  L  V  D  I  V  F  T  Y  F  I  C  H  Q  I  L  V  K  L  G  I  L  P  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53536" stop="53204"/>
                    <exon start="52900" stop="52784"/>
                    <exon start="52699" stop="52568"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKVFHYGSISLIVEPCRAAHMKAMEVAKEAGALLSYDPNLRLPLWPSAEEAKKQIKSIWDSADVIKVSDVELEFLTGSNKIDDESAMSLWHPNLKLLLVTLGEKGCNYYTKKFHGTVGGFHVKTVDTTGAGDSFVGALLTKIVDDQTILEDEARLKEVLRFSCACGAITTTKKGAIPALPTASEALTLLKGGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="52902" e_stop="52784"/>
            <exon e_start="52699" e_stop="52270"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52902" e_stop="52784" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52699" e_stop="52270" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52902" stop="52784"/>
              <exon start="52699" stop="52412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52900" stop="52784"/>
              <exon start="52699" stop="52412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52835" stop="52784"/>
              <exon start="52699" stop="52397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52665" stop="52412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52656" stop="52274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52655" stop="52270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52625" stop="52411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304591" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG : GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCATATGCAGCTTCCTTGTAACTTCTCCTTTACATCATCATACTAGTATTTCATTATCCAATTCTATATTCTAGTAGACATAGTTTTCACCTATTTCATTTGTCATCAAATCCTAGTAAAGTTGGGAATTTTGCCCAAGAGTTC</gDNA_template>
            <first_frame> R  N  S  M  E  P  L  E  D  S  M  *  R  L  L  T  P  L  E  L  V  I  L  L  L  V  P  F  *  P  R  L  L  M  I  K  P  F  S  R :   M  K  Q  G  *  R  K  Y  L  G  F  H  V  H  V  E  P  S  L  Q  P  R  K  E  Q  S  Q  L  C  L  L  H  L  K  P  S  L  C  S  R  E  E  H  R  N  I  V  L  S  F  F  F  F  P  S  S  Y  I  S  P  P  L  *  V  F  L  K  L  V  G  S  L  F  S  F  G  F  *  C  F  V  V  M  N  V  H  Q  D  T  *  *  T  K  L  S  S  Y  A  A  S  L  *  L  L  L  Y  I  I  I  L  V  F  H  Y  P  I  L  Y  S  S  R  H  S  F  H  L  F  H  L  S  S  N  P  S  K  V  G  N  F  A  Q  E  F </first_frame>
            <second_frame>  E  I  P  W  N  R  W  R  I  P  C  E  D  C  *  H  H  W  S  W  *  F  F  C  W  C  P  S  N  Q  D  C  *  *  S  N  H  S  R   : G  *  S  K  V  E  G  S  T  *  V  F  M  C  M  W  S  H  H  Y  N  Q  E  R  S  N  P  S  F  A  Y  C  I  *  S  P  H  F  A  Q  G  R  S  I  E  T  S  C  Y  L  F  S  F  F  H  L  H  I  F  P  P  L  Y  E  F  F  *  S  *  *  E  A  F  S  V  L  D  F  N  V  L  L  *  *  M  S  I  K  T  L  N  K  L  S  F  L  H  M  Q  L  P  C  N  F  S  F  T  S  S  Y  *  Y  F  I  I  Q  F  Y  I  L  V  D  I  V  F  T  Y  F  I  C  H  Q  I  L  V  K  L  G  I  L  P  K  S   </second_frame>
            <third_frame>   K  F  H  G  T  V  G  G  F  H  V  K  T  V  D  T  T  G  A  G  D  S  F  V  G  A  L  L  T  K  I  V  D  D  Q  T  I  L  E  :  D  E  A  R  L  K  E  V  L  R  F  S  C  A  C  G  A  I  T  T  T  K  K  G  A  I  P  A  L  P  T  A  S  E  A  L  T  L  L  K  G  G  A  *  K  H  R  V  I  F  F  L  F  S  I  F  I  Y  F  P  P  F  M  S  F  F  E  A  S  R  K  P  F  Q  F  W  I  L  M  F  C  C  D  E  C  P  S  R  H  L  I  N  *  A  F  F  I  C  S  F  L  V  T  S  P  L  H  H  H  T  S  I  S  L  S  N  S  I  F  *  *  T  *  F  S  P  I  S  F  V  I  K  S  *  *  S  W  E  F  C  P  R  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52900" stop="52784"/>
                    <exon start="52699" stop="52568"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFHGTVGGFHVKTVDTTGAGDSFVGALLTKIVDDQTILEDEARLKEVLRFSCACGAITTTKKGAIPALPTASEALTLLKGGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="57668" PGL_stop="58878"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57668" e_stop="58878"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57668" e_stop="58878" e_length="1211"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57668" stop="58381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57669" stop="58314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58162" stop="58878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544417" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATTTTGTACTTCTGAGACTAATGCCCAAACATCCAAAATCACCAATCTAGATTCTAAGATATTCTACACAACCAGAACCCCTGATCAAGCTAAAGTCTATGCTAAACTCCCAAATCAAGCCAAAGTTTATCCCTCCAAAATTCCTAATCAAGCTAAGGTCTACACAACCAAAATCCCTAATCTAGATTCTAAGATATTCTACGCGACCAGAACCCCTGATCAAGCCAAGGTCTATCCAGCTAATCTTCCCGAACAAGCTAAGGTCTATACATCAAAAATTTATGCAACTTCACACTCTCATAGTCATCATCTTGGAGAAGTCTCTTTCTTCAGAGTCTCTACCCTCAAACCTGGAAACACAGTCCATCTAGACAACTTAGTGAACCCGTTCCCTCATCGCTCATTTCTTCCATCACAAATTGCCTCAAAGATCTCCATTAACTCAAACCATCTCCAACACTTATTCCCTCAAACTTTCACTTCACCATACACAAAAGATACCACAAAAACTACCATCCTCAATTGCAATGCACCTACTCTAAAAGGAGAAGTTAAAACATGCGCGAAATCCTTGGAAGAAATGATAGAGTTCTCAAAGAGAAGCTTGAAACAGAACCACCTAATTTCATTGACAACAGAAAGCATACAAGGGTCAGGACAGAAACTAAAAATTGAGAAATTTCATAAAATCAATTCCCAAAGGAGTGTCTCATGCCATGAGATATTCCTTCCTTTTGCTACATACTTTTGTCATTTGCTATCTTCAACTAACATTTACGCGGTGGAGCTAGTTGATTTAAACACTAATGTTCATGTTAATAAAGCTATGGTTGTTTGTCATATGGATACTTCTTCTTGGCCAGCTGATCATCCAGTTTTCAAAAAATTGAATTTTTCACCTGGAAATGGAGAGGTTTGTCATTGGATGTCACAAGCTGATCTTGTTTGGGTTGGAGATGATGCGCATGCATAAAATAATTTTTTAAAAAAAGTCTACTTATGTTAATTAAGCTTTGAGTTTAATTGTAAAAATGGATTGTCTTTTTTCTTGTTTCTATGTGTTTAGGAATAGTAAGGTATTGTAATTATGGGGAAAAAAGTCCAAATCCTTACTTTCCCTTTCTTGTGTGAAGTGTGAATTGTGATGGTTTTTGGTCTTTTTATGTGTATTTTAATAACTTGCAGTTAATACTCCTATTCTAAGTTACT</gDNA_template>
            <first_frame> I  F  C  T  S  E  T  N  A  Q  T  S  K  I  T  N  L  D  S  K  I  F  Y  T  T  R  T  P  D  Q  A  K  V  Y  A  K  L  P  N  Q  A  K  V  Y  P  S  K  I  P  N  Q  A  K  V  Y  T  T  K  I  P  N  L  D  S  K  I  F  Y  A  T  R  T  P  D  Q  A  K  V  Y  P  A  N  L  P  E  Q  A  K  V  Y  T  S  K  I  Y  A  T  S  H  S  H  S  H  H  L  G  E  V  S  F  F  R  V  S  T  L  K  P  G  N  T  V  H  L  D  N  L  V  N  P  F  P  H  R  S  F  L  P  S  Q  I  A  S  K  I  S  I  N  S  N  H  L  Q  H  L  F  P  Q  T  F  T  S  P  Y  T  K  D  T  T  K  T  T  I  L  N  C  N  A  P  T  L  K  G  E  V  K  T  C  A  K  S  L  E  E  M  I  E  F  S  K  R  S  L  K  Q  N  H  L  I  S  L  T  T  E  S  I  Q  G  S  G  Q  K  L  K  I  E  K  F  H  K  I  N  S  Q  R  S  V  S  C  H  E  I  F  L  P  F  A  T  Y  F  C  H  L  L  S  S  T  N  I  Y  A  V  E  L  V  D  L  N  T  N  V  H  V  N  K  A  M  V  V  C  H  M  D  T  S  S  W  P  A  D  H  P  V  F  K  K  L  N  F  S  P  G  N  G  E  V  C  H  W  M  S  Q  A  D  L  V  W  V  G  D  D  A  H  A  *  N  N  F  L  K  K  V  Y  L  C  *  L  S  F  E  F  N  C  K  N  G  L  S  F  F  L  F  L  C  V  *  E  *  *  G  I  V  I  M  G  K  K  V  Q  I  L  T  F  P  F  L  C  E  V  *  I  V  M  V  F  G  L  F  M  C  I  L  I  T  C  S  *  Y  S  Y  S  K  L   </first_frame>
            <second_frame>  Y  F  V  L  L  R  L  M  P  K  H  P  K  S  P  I  *  I  L  R  Y  S  T  Q  P  E  P  L  I  K  L  K  S  M  L  N  S  Q  I  K  P  K  F  I  P  P  K  F  L  I  K  L  R  S  T  Q  P  K  S  L  I  *  I  L  R  Y  S  T  R  P  E  P  L  I  K  P  R  S  I  Q  L  I  F  P  N  K  L  R  S  I  H  Q  K  F  M  Q  L  H  T  L  I  V  I  I  L  E  K  S  L  S  S  E  S  L  P  S  N  L  E  T  Q  S  I  *  T  T  *  *  T  R  S  L  I  A  H  F  F  H  H  K  L  P  Q  R  S  P  L  T  Q  T  I  S  N  T  Y  S  L  K  L  S  L  H  H  T  Q  K  I  P  Q  K  L  P  S  S  I  A  M  H  L  L  *  K  E  K  L  K  H  A  R  N  P  W  K  K  *  *  S  S  Q  R  E  A  *  N  R  T  T  *  F  H  *  Q  Q  K  A  Y  K  G  Q  D  R  N  *  K  L  R  N  F  I  K  S  I  P  K  G  V  S  H  A  M  R  Y  S  F  L  L  L  H  T  F  V  I  C  Y  L  Q  L  T  F  T  R  W  S  *  L  I  *  T  L  M  F  M  L  I  K  L  W  L  F  V  I  W  I  L  L  L  G  Q  L  I  I  Q  F  S  K  N  *  I  F  H  L  E  M  E  R  F  V  I  G  C  H  K  L  I  L  F  G  L  E  M  M  R  M  H  K  I  I  F  *  K  K  S  T  Y  V  N  *  A  L  S  L  I  V  K  M  D  C  L  F  S  C  F  Y  V  F  R  N  S  K  V  L  *  L  W  G  K  K  S  K  S  L  L  S  L  S  C  V  K  C  E  L  *  W  F  L  V  F  L  C  V  F  *  *  L  A  V  N  T  P  I  L  S  Y  </second_frame>
            <third_frame>   I  L  Y  F  *  D  *  C  P  N  I  Q  N  H  Q  S  R  F  *  D  I  L  H  N  Q  N  P  *  S  S  *  S  L  C  *  T  P  K  S  S  Q  S  L  S  L  Q  N  S  *  S  S  *  G  L  H  N  Q  N  P  *  S  R  F  *  D  I  L  R  D  Q  N  P  *  S  S  Q  G  L  S  S  *  S  S  R  T  S  *  G  L  Y  I  K  N  L  C  N  F  T  L  S  *  S  S  S  W  R  S  L  F  L  Q  S  L  Y  P  Q  T  W  K  H  S  P  S  R  Q  L  S  E  P  V  P  S  S  L  I  S  S  I  T  N  C  L  K  D  L  H  *  L  K  P  S  P  T  L  I  P  S  N  F  H  F  T  I  H  K  R  Y  H  K  N  Y  H  P  Q  L  Q  C  T  Y  S  K  R  R  S  *  N  M  R  E  I  L  G  R  N  D  R  V  L  K  E  K  L  E  T  E  P  P  N  F  I  D  N  R  K  H  T  R  V  R  T  E  T  K  N  *  E  I  S  *  N  Q  F  P  K  E  C  L  M  P  *  D  I  P  S  F  C  Y  I  L  L  S  F  A  I  F  N  *  H  L  R  G  G  A  S  *  F  K  H  *  C  S  C  *  *  S  Y  G  C  L  S  Y  G  Y  F  F  L  A  S  *  S  S  S  F  Q  K  I  E  F  F  T  W  K  W  R  G  L  S  L  D  V  T  S  *  S  C  L  G  W  R  *  C  A  C  I  K  *  F  F  K  K  S  L  L  M  L  I  K  L  *  V  *  L  *  K  W  I  V  F  F  L  V  S  M  C  L  G  I  V  R  Y  C  N  Y  G  E  K  S  P  N  P  Y  F  P  F  L  V  *  S  V  N  C  D  G  F  W  S  F  Y  V  Y  F  N  N  L  Q  L  I  L  L  F  *  V  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57668" stop="58642"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>972</number_coding_nucleotides>
                  <number_encoded_amino_acids>324</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFCTSETNAQTSKITNLDSKIFYTTRTPDQAKVYAKLPNQAKVYPSKIPNQAKVYTTKIPNLDSKIFYATRTPDQAKVYPANLPEQAKVYTSKIYATSHSHSHHLGEVSFFRVSTLKPGNTVHLDNLVNPFPHRSFLPSQIASKISINSNHLQHLFPQTFTSPYTKDTTKTTILNCNAPTLKGEVKTCAKSLEEMIEFSKRSLKQNHLISLTTESIQGSGQKLKIEKFHKINSQRSVSCHEIFLPFATYFCHLLSSTNIYAVELVDLNTNVHVNKAMVVCHMDTSSWPADHPVFKKLNFSPGNGEVCHWMSQADLVWVGDDAHA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="60789" PGL_stop="61517"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60789" e_stop="61517"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60789" e_stop="61517" e_length="729"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60789" stop="61368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60799" stop="61486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60812" stop="61517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60812" stop="61381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60812" stop="61252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60818" stop="61260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287550" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACAGCTATGGGGCTCTCAGCTTCTAAGAGAGTTAGCAATTCACTCCAAAATTCATCCGAATTCAACTCGGCATGTGATTCAGTCTATGATGATTGTCTCTCCCTATCACAGCACGCTTTCGCCGGAGTGAAACCCTACCAGCTTTTCTCCGCCGTGGAACGCCTGCACGCTTCTCTCTCTCCCTCCGTACCTCTCATAAAAAATTGGGTTAAATCGCCTCCGACCCGATTACAGGTCGATAAGGCCTTCAAAATCGTGTCAACGCGCCGATCCGGCGAAAAGGAGAGTGAAATTGTGCTTGGGAACGAGGAATTCAAGGAGTTCTCAGTGGAGGTATTTTCGGACGCTGTCGTTTCGTGTGCAGGGAAAGAGCTTCTAAAGCGGGTTCCGGTTGGTGCTTTGGGGATCGCTGGCGTTGGTGCGGTGGTGAAGCCTGGGAAAGAATTAATTGCGGCGGCGATTGGTGCTTACGCGCTCGGTGTTGCAACATCGGTATACGTCAGCTTGGCTTAAACGTATTTTTTTTGTTTTTTTTTAAAATTACAAAAATGAATAAAAGTTTTTACAAGTTTGGTTAAGCCCAAAAGTACAAATTAGTCATGTTTTAAATTATTATAACCCCTAATAAGAGACTGAAAGCAAGTAGAATAATTGTAATTAGATGATTAACAGTCTTTATCCACATTTATATAATTTGTATAAATTATTTTTTTTTTATAAAAAAAAA</gDNA_template>
            <first_frame> L  Q  L  W  G  S  Q  L  L  R  E  L  A  I  H  S  K  I  H  P  N  S  T  R  H  V  I  Q  S  M  M  I  V  S  P  Y  H  S  T  L  S  P  E  *  N  P  T  S  F  S  P  P  W  N  A  C  T  L  L  S  L  P  P  Y  L  S  *  K  I  G  L  N  R  L  R  P  D  Y  R  S  I  R  P  S  K  S  C  Q  R  A  D  P  A  K  R  R  V  K  L  C  L  G  T  R  N  S  R  S  S  Q  W  R  Y  F  R  T  L  S  F  R  V  Q  G  K  S  F  *  S  G  F  R  L  V  L  W  G  S  L  A  L  V  R  W  *  S  L  G  K  N  *  L  R  R  R  L  V  L  T  R  S  V  L  Q  H  R  Y  T  S  A  W  L  K  R  I  F  F  V  F  F  *  N  Y  K  N  E  *  K  F  L  Q  V  W  L  S  P  K  V  Q  I  S  H  V  L  N  Y  Y  N  P  *  *  E  T  E  S  K  *  N  N  C  N  *  M  I  N  S  L  Y  P  H  L  Y  N  L  Y  K  L  F  F  F  Y  K  K  K </first_frame>
            <second_frame>  Y  S  Y  G  A  L  S  F  *  E  S  *  Q  F  T  P  K  F  I  R  I  Q  L  G  M  *  F  S  L  *  *  L  S  L  P  I  T  A  R  F  R  R  S  E  T  L  P  A  F  L  R  R  G  T  P  A  R  F  S  L  S  L  R  T  S  H  K  K  L  G  *  I  A  S  D  P  I  T  G  R  *  G  L  Q  N  R  V  N  A  P  I  R  R  K  G  E  *  N  C  A  W  E  R  G  I  Q  G  V  L  S  G  G  I  F  G  R  C  R  F  V  C  R  E  R  A  S  K  A  G  S  G  W  C  F  G  D  R  W  R  W  C  G  G  E  A  W  E  R  I  N  C  G  G  D  W  C  L  R  A  R  C  C  N  I  G  I  R  Q  L  G  L  N  V  F  F  L  F  F  F  K  I  T  K  M  N  K  S  F  Y  K  F  G  *  A  Q  K  Y  K  L  V  M  F  *  I  I  I  T  P  N  K  R  L  K  A  S  R  I  I  V  I  R  *  L  T  V  F  I  H  I  Y  I  I  C  I  N  Y  F  F  F  I  K  K   </second_frame>
            <third_frame>   T  A  M  G  L  S  A  S  K  R  V  S  N  S  L  Q  N  S  S  E  F  N  S  A  C  D  S  V  Y  D  D  C  L  S  L  S  Q  H  A  F  A  G  V  K  P  Y  Q  L  F  S  A  V  E  R  L  H  A  S  L  S  P  S  V  P  L  I  K  N  W  V  K  S  P  P  T  R  L  Q  V  D  K  A  F  K  I  V  S  T  R  R  S  G  E  K  E  S  E  I  V  L  G  N  E  E  F  K  E  F  S  V  E  V  F  S  D  A  V  V  S  C  A  G  K  E  L  L  K  R  V  P  V  G  A  L  G  I  A  G  V  G  A  V  V  K  P  G  K  E  L  I  A  A  A  I  G  A  Y  A  L  G  V  A  T  S  V  Y  V  S  L  A  *  T  Y  F  F  C  F  F  L  K  L  Q  K  *  I  K  V  F  T  S  L  V  K  P  K  S  T  N  *  S  C  F  K  L  L  *  P  L  I  R  D  *  K  Q  V  E  *  L  *  L  D  D  *  Q  S  L  S  T  F  I  *  F  V  *  I  I  F  F  L  *  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60791" stop="61303"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TAMGLSASKRVSNSLQNSSEFNSACDSVYDDCLSLSQHAFAGVKPYQLFSAVERLHASLSPSVPLIKNWVKSPPTRLQVDKAFKIVSTRRSGEKESEIVLGNEEFKEFSVEVFSDAVVSCAGKELLKRVPVGALGIAGVGAVVKPGKELIAAAIGAYALGVATSVYVSLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 300 chains have been computed
$ 
$ memory statistics:
$ 604512 bytes spliced alignments in total
$ 278 spliced alignments have been stored
$ 2174 bytes was the average size of a spliced alignment
$ 27512 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 2116 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 315 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 20:38:54
-->
