<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 20:42:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336130" ref_strand="+" ref_description="SGN-U336130        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | aminotransferase class I and II family protein, low similarity to Aromatic Aminotransferase from Pyrococcus horikoshii GP:14278621; contains Pfam profile PF00155 aminotransferase, classes I and II | chr4:16171697-16174681 REVERSE | Aliases: T16L1.170, T16L1_170(evalue: 2e-38, score=156) genbank/nr: Aminotransferases(evalue: 2e-37, score=159)">
      <seq>ttgcaacaccctctacggagaaaacttcttacaagacacaggtctcccgcaatgaaaacttagcgaaacttcaagctggttatctgtttcctgagatcgcaagaaggagatctgcacacatgttgaaacatcctgatgctcaaattataagccttggaattggtgacactaccgagcccattcctgaagtcataacttctgccatggcaaagagagcacatgaactgtcaacattaaatggttacagtggttatggtgctgagcaaggagaaaaagtaagtagtgccccctctcgtcatatttcagtaatatgatattagctctactatttattgtccaatccttgtttctcttccttcttttgctacaataataatggttctggccttcactgatagtttgtctttcctcgttttgtaccaatttgattgttcatttgtccttttctttcctcaaatacattgcaatattctttattcaggtatccactcaataaagttaaaaaacttcctcttctattcataacgtcattaaaggatgtgcagatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4251" stop="2023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3951" g_stop="3925" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3924" i_stop="3552" i_length="373">
            <donor d_prob="0.795" d_score="0.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3551" g_stop="3484" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="95" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3483" i_stop="3111" i_length="373">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.210" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3110" g_stop="2994" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="212" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2993" i_stop="2661" i_length="333">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2660" g_stop="2323" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="550" r_length="338" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-U336130" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3951" e_stop="3925"/>
          <exon e_start="3551" e_stop="3484"/>
          <exon e_start="3110" e_stop="2994"/>
          <exon e_start="2660" e_stop="2323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAACACCCTCTACGGAGAAAACTTGTAAGCCTTTATTTTAGTGTTGGTTTCCAGTTATATATTGCCAAGTTGAAATGAGAATAGTAGACTTGCGAGCCTGTGCAATGTGGATCAGTTAGAGCCTTTGGCAATTAATGTTGAGAACTTTAAACTAATCAATGTATTGCATATAAATTATTTCAACTTGCTGAAAAAGCAAATTTAAGACTCAAAATGTTTGCTACATGCACGTTTTTGAAATGCAAGAATTGTAAAATTATTGTCTTTCAACAATAACAAAAAGAAAACAACTGTCAGTTTAGGTGAGGTCTTAGTCTCATCTGTATCAGTCCATTCAAATAGCTGTGCATTCTGTTAACATTTGACTGCGCTAACGAAATTTCTGTTTGTCTTGAAGCTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAGGTCTGTATTTCAACTGGTCAATTGTCATTAAGTTGATTGCTGTTTATCTGTATTTTTAAGGTACTTTGCTATAGAAGATGTAGCATTGCTTTTGGGAACATGCAAATAAAATATTGATTTAGATGAAATTGCAGTAATTTGGAATCACGATAAGCCAGTGAGCAAATTTAGTTACCTGAAGCAAAATTATTTGCTTTTTTAGCTGAATTTGGATGACTTATTATGTATCTTTACCTCTCTATGCTTCCATCCTGAAATAGGAGAAATAATTCAATTCTTTATAGTAATACACTCAAAGAGAACTCTTATTTTGTAAACCATCTCTCCTACCTGCATCGAGTTAAGTTCTAAACAATATCTTTGGTGAAGTTAGATCGCAAGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGGTGACACTACCGAGCCCATTCCTGAAGTCATAACTTCTGCCATGGCAAAGGTAATACTGATATCTCTATCATACTATAGTTTTTTGTTATGGGTCAAAACTTCGAAGTTTACTGTATTTTTGTGTCCTATTCTGCCTGACCAATGATGGGATTACTAACAAAAATCATGTAGCTGGTAACACTTGGTTTTATACTAGACATCTGTCTAAATATTTCTGTTGATGAAAAATAAAATATTTCTGTTGATAGATTTCAGCATATGCTTACATAGACTACCATTTAACTTGATAGGTAGTGTGTATTTTTAATCTATTCTGCTTATTGAACTATAAGTCGATAACTTACTTCCTGTTCTTGATTTTGTTTTCTTTGCTCATTTGCAGAGAGCACATGAACTGTCAACATTAAATGGTTACAGTGGTTATGGTGCTGAGCAAGGAGAAAAAGTAAGTAGTGCCCCCTCTCGTCATATTTCAGTAATATGATATTAGCTCTACTATTTATTGTCCAATCCTTGTTTCTCTTCCTTCTTTTGCTACAATAATAATGGTTCTGGCCTTCACTGATAGTTTGTCTTTCCTCGTTTTGTACCAATTTGATTGTTCATTTGTCCTTTTCTTTCCTCAAATACATTGCAATATTCTTTATTCAGGTATCCACTCAATAAAGTTAAAAAACTTCCTCTTCTATTCATAACGTCATTAAGGGATGTGCAGATGTG</genome_strand>
        <mrna_strand>TTGCAACACCCTCTACGGAGAAAACTT.....................................................................................................................................................................................................................................................................................................................................................................................CTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................ATCGCAAGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGGTGACACTACCGAGCCCATTCCTGAAGTCATAACTTCTGCCATGGCAAAG.............................................................................................................................................................................................................................................................................................................................................AGAGCACATGAACTGTCAACATTAAATGGTTACAGTGGTTATGGTGCTGAGCAAGGAGAAAAAGTAAGTAGTGCCCCCTCTCGTCATATTTCAGTAATATGATATTAGCTCTACTATTTATTGTCCAATCCTTGTTTCTCTTCCTTCTTTTGCTACAATAATAATGGTTCTGGCCTTCACTGATAGTTTGTCTTTCCTCGTTTTGTACCAATTTGATTGTTCATTTGTCCTTTTCTTTCCTCAAATACATTGCAATATTCTTTATTCAGGTATCCACTCAATAAAGTTAAAAAACTTCCTCTTCTATTCATAACGTCATTAAAGGATGTGCAGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319073" ref_strand="+" ref_description="SGN-U319073        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains 3 transmembrane domains; contains Pfam profile PF05832: Eukaryotic protein of unknown function | chr1:3012764-3015093 REVERSE | Aliases: T31J12.5, T31J12_5(evalue: 2e-82, score=302) genbank/nr: gi|18391009|ref|NP_563842.1| expressed protein [Arabidopsis thaliana] gi|38257656|sp|Q8LEK2|FA18_ARATH FAM18-like protein At1g09330 gi|21553515|gb|AAM62608.1| unknown [Arabidopsis thaliana] gi|28466859|gb|AAO44038.1| At1g09330 [Arabidopsis thaliana](evalue: 2e-80, score=302)">
      <seq>gagatcaggcgaaatcctaaggaaaattgatttgaaaaattcgacatggatcttaatccacctgcaggggaggactatgcacacccacagatatgttttttccatgtgctcttcaaggcagcagcattagcgttttatattctgtcagctttatttgttgatagttttgttatcatctttgtggtaactgttcttttagctgctcttgacttttgggtggttaagaacgtcagtggacgtattcttgtgggtttaaggtggtggaatgaaatagatgacaatggcgagagtgtgtggagatttgagtgccttgatcaagagtcaatggctcgcatgaacaagaaggattcctggctgttttggtggactttgtacctaacagctgttgcttggttctttctcgcgatattctccctcattaggttccaagctgattatcttctcgttgttggagtttgcttgactctcagcgtcgcaaatattgttggttttactagatgccgcaaagatgctaagaagcagcttcaagcatttgcaacccagaccctcacttctcggttctcctctactctacagtcggcatttagtgttgtttgaacaattaatacagaacaagctactcgtgagaggaaactggtcgtcagtgtccacctctacgaacaatcatgtattgattatataatggtggtttgtatacgctgtgaaattatgatggcacatatcggaaggatgcttaggagattttgacatggtgttaatttggacctctcctttattgaggtcttgtacatgcagaacatgaacgaactgggaaaacgtttttgttcctttcagttttcatgaatccaattgcttcattgtatttttattttttttgcaccgcacggctggtgaatcgacgtatgggccatatgcataaatgtatctgaaatttgccattcacgttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5764" stop="10080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6064" g_stop="6123" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6124" i_stop="8028" i_length="1905">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8029" g_stop="8085" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="117" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8086" i_stop="8168" i_length="83">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8169" g_stop="8372" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="321" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8373" i_stop="8515" i_length="143">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.748" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8516" g_stop="8575" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="381" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8576" i_stop="8873" i_length="298">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8874" g_stop="9000" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="508" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9001" i_stop="9341" i_length="341">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9342" g_stop="9790" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="957" r_length="449" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-U319073" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>957</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6064" e_stop="6123"/>
          <exon e_start="8029" e_stop="8085"/>
          <exon e_start="8169" e_stop="8372"/>
          <exon e_start="8516" e_stop="8575"/>
          <exon e_start="8874" e_stop="9000"/>
          <exon e_start="9342" e_stop="9790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATCAGGCGAAATCCTAAGGAAAATTGATTTGAAAAATTCGACATGGATCTTAATCCAGTAAGCGTCGTAGTTTTCCTTATTTGATTCATTTTTTCACCTAATGCTGTAAATTGATACTTTGAAATCTCACAATTGTTTTTTTTTTGTGTGGGAATGAGTTGCATTGATGTTAGGGTTTTGTTTGAGCTCGTAATTATTTTATTTGATCTGTTGATTTGCTCTTTTGTTTGGATTTTCGTGTTTCCATTACTTTTCTACTGCATATCATGTGTTACGGATCTGTCTTTGGGAATTGAAAATTTCTGCTTTAGTGAATTGTATTACCCGGTAGGTGAATAATTTGTTTTAGTTGGATGAATTGTTACTGCAAATCTAGGTGAAATAATGGAGTTAGTAGGAAGTGTTGATGTGCTAGGCTCAAGGATATTATGGTGTCATAGTCACAATTTGATGAGTTTAGTATGGGACGAGTAGTCGAGTACTCCCTCATGTTGATCCCCTTGTTTACCAAGCAAGATCGAAATGATTGGGCATAAAGTGTCTGTAGATGGTGTCTTAAGTTTTGTCATTGATTGCTTATTTAATATAGTTGTATCTCTTTTTGAGAGACGACATAGTATTCCTGCTTTGTTCTATTCTCAAATCAATGTGAGCATTGCACGGATTTCACATCCAGACAAAGGAGGGAAAGTGCGGTTGGTTTATGTCTAGCGTAAAAGAAATATCTTCTAAATGTTGAGATCCTAATTTGCTTCAAGGAACAAATTCTTTTACTTGGACTGGACCTAAGTATTGTAAAATGGATGTAGAGGACTTTTTAGCCAATCATTTTAGCTTGGGAATGGAGCTTGGTGATTGTTTTGTATTACATAGTTTCTTGTGTGTATATATTGATGCAACTCTGAAATTTAAACTTCTAAATGTGTTATTTAATTTAATTACCTATATTTATTTATTTTAAAATGTGCTATTAATTTTGGATGACAGGTAAGTCCCACTGTCCCTCTATATCATGTCAGTTTCATGATCGGTGTGGTTAAGTTTTAGGTTAGTTTAGTAAAAGGTACGAATAGCAGTCTAGCACACTTACCTTGGAGGATAGAATCACATGGATGAAAGTTGTTTCAAAAGACTTATAAATTCTCAAAATCTACCTGCACTTTAGAGAGAAAATGACGGAAGTAAAGATCCATATAGAAGATACTGGCTAGTTGGAATTATAATCTATGTTGCTCGTACTCTTCAAAATGTCGACAGGTGTGTGTCAGGTCCTCCAAAAGTAGTGGTTTTTTTGGAGTATTCGACACGGGTGGGGCAACATATTTGGAGAGTCTGGGCAACATAGATTAAAACTTATTTATATTGGCATGCTTACATTAGCTTAAACATTATAGTAGTTTTTCTTACCCCTTTTTTCCTTGTTTAGATATTCGTATGTTAGTAGAAAATCTAGAGAACTCTAGCGGTAGATAATCCCAAACTATTGAAGATTGGAATGAAACTGGTCAGAATGTGGCGAAATAGATCTATAGTGCCAATATCAACTAGCATGGGATTGAGTGATAGTTGTTTTGTTATTGTTGTAATCTTTAAGTTCGTTCCTTTTAGATCAATCATCTGGATAAAACGGTGATATATGATCTAGGATAAGCAATGCAGGTAAAATAGGATTTTTTATCGGATGTCCCCGAAGGTAATTTTCTTTTTTAAAAAATAAAAATGGTTAACCTTTTACATAATACTCTTTAGCTTAGAGGAGTTTGTGGCCTTCCAGTTATCTTACTTTTCTCTGTTACTTATTGTAGATGATCTTCCCTTCTTATTTTCTCTCTTTTACTACCCTTGCTGCTCCTTTCTCCTTGCACCCCTAAACGCTCTCCGCTGCAAGGAAAGGAGGGAGCACATAGAATTTGTTGACTGATTCTATCATAAAGTTAATTAAGCTGTCACATTCTTTCTCAGCCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAGGTCTAGCTTATTACATATGCTTTTTATTTTAATGTCTTAGGTTGTAATTGCTTTCATTTAATACATTTTCTTTGCATTGACAGGCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAGGTGAGAAATCTTGTTTCAGGTTCCTTAGCATACATCTTTACCTTCAGACATTCGTTTATTTTTGAAGTGCTTGCCCATTTAGTCATTTTAATAATTACCTTTGTTGCCTTGGACAAACCTTTTTCCTTCACTTCTCCTTTCAGTCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACAGTAAGTGAAGACTCTATCACACTGGCTGCTTATTCTAATGTTCAATATAACAAACTGAGCACATGTATTGTACAATCAGAAAACAAGAAAAATCGGCAACAGGCACAAAATATATGTGGATAAGAACAATGGCCCTTCACACCTTGGCTTCTCGATTTTTTTTTCAGTTTTTACTTTTTCAAGATTCAGGCTTCAAATATATTCTAGAACTTCTTTTCTTTCTATCTGTACCTTATTTTTGCAAAGTGAAATAGTTAGTTGTTGATGTGTTGCACCTGATCCGTGTACTTTGTTGTAGGCTGTTGCTTGGTTCTTTCTCGCGATATTCTCCCTCATTAGGTTCCAAGCTGATTATCTTCTCGTTGTTGGAGTTTGCTTGACTCTCAGCGTCGCAAATATTGTTGGTTTTACTAGATGCCGCAAAGGTGTGTACTTACTTTAACTTCTATGGATTCTGCCTCTAACAATATCTTTACCTCTGGAGTTTTACTTTGTTTGGGTGCTCCAGTTTTCATGCATGAGCATAATATGTATGATGATAGATGTTGTCAGGTTCCCTCATTAGTTTGTGTATTCTCTTATTCGCTTCTGTTATGTATATATGTATGTATGTTGTTGCTTCTGTCTTGCTCTGCTTGTTTCAGTTCTCATTTTTGTGTTTGGTAGTCATGATCAGATCTCTGTGTACTATTCTCTTTTGAATTCTGCTTTCCAGTACGCCCTTACTGTTTAATATTCATATATTTTTCTTCTTTCTAATATCCAGATGCTAAGAAGCAGCTTCAAGCATTTGCAACCCAGACCCTCACTTCTCGGTTCTCCTCTACTCTACAGTCGGCATTTAGTGTTGTTTGAACAATTAATACAGAACAAGCTACTCGTGAGAGGAAACTGGTCGTCAGTGTCCACCTCTACGAACAATCATGTATTGATTATATAATGGTGGTTTGTATACGCTGTGAAATTATGATGGCACATATCGGAAGGATGCTTAGGAGATTTTGACATGGTGTTAATTTGGACCTCTCCTTTATTGAGGTCTTGTACATGCAGAACATGAACGAACTGGGAAAACGTTTTTGTTCCTTTCAGTTTTCATGAATCCAATTGCTTCATTGTATTTTTATTTTTTTTGCACCGCACGGCTGGTGAATCGACGTATGGGCCATATGCATAAATGTATCTGAAATTTGCCATTCACGTTCTGCAGCAAGT</genome_strand>
        <mrna_strand>GAGATCAGGCGAAATCCTAAGGAAAATTGATTTGAAAAATTCGACATGGATCTTAATCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAG...................................................................................GCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAG...............................................................................................................................................TCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACA..........................................................................................................................................................................................................................................................................................................GCTGTTGCTTGGTTCTTTCTCGCGATATTCTCCCTCATTAGGTTCCAAGCTGATTATCTTCTCGTTGTTGGAGTTTGCTTGACTCTCAGCGTCGCAAATATTGTTGGTTTTACTAGATGCCGCAAAG.....................................................................................................................................................................................................................................................................................................................................................ATGCTAAGAAGCAGCTTCAAGCATTTGCAACCCAGACCCTCACTTCTCGGTTCTCCTCTACTCTACAGTCGGCATTTAGTGTTGTTTGAACAATTAATACAGAACAAGCTACTCGTGAGAGGAAACTGGTCGTCAGTGTCCACCTCTACGAACAATCATGTATTGATTATATAATGGTGGTTTGTATACGCTGTGAAATTATGATGGCACATATCGGAAGGATGCTTAGGAGATTTTGACATGGTGTTAATTTGGACCTCTCCTTTATTGAGGTCTTGTACATGCAGAACATGAACGAACTGGGAAAACGTTTTTGTTCCTTTCAGTTTTCATGAATCCAATTGCTTCATTGTATTTTTATTTTTTTTGCACCGCACGGCTGGTGAATCGACGTATGGGCCATATGCATAAATGTATCTGAAATTTGCCATTCACGTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313631" ref_strand="+" ref_description="SGN-U313631        Tomato 200607 #1 [74 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:3015388-3018236 FORWARD | Aliases: None(evalue: 0, score=649) genbank/nr: gi|15217485|ref|NP_172405.1| RNA-binding protein -related [Arabidopsis thaliana] gi|25402537|pir||E86226 hypothetical protein [imported] - Arabidopsis thaliana gi|4337177|gb|AAD18098.1| Identical to gb|Y10557 g5bf gene from Arabidopsis thaliana.  ESTs gb|R30578, gb|R90475, gb|T22384, gb|T22425, gb|N64934 and gb|T46767 come from this gene gi|11762234|gb|AAG40395.1| At1g09340 [Arabidopsis thaliana] gi|14334754|gb|AAK59555.1| putative RNA-binding protein [Arabidopsis thaliana] gi|16226247|gb|AAL16114.1| At1g09340/T31J12_6 [Arabidopsis thaliana] gi|17979099|gb|AAL47493.1| putative RNA-binding protein [Arabidopsis thaliana](evalue: 0, score=649)">
      <seq>atatggacatcaagaaaatcatcatagcccttcttcttcttctttattctctgccccaagttcttcttcacactgaggaaggaaaaaaaggcaccaaatcaacaacaacatggctagtttggttgctattcaacccaaacagccttctttctctctccttccttcttccaattctgacttcaatggtgccagattgatctcctcatttcagtataagaggaaaccatgcttgtcaaaaggagcattgcaagttacagcctcgagtgaaaagaaaatcctgataatgggaggcacgcgattcattggtgtgttcctatcgagacttcttgtgaaagaaggccaccaggttactctattcacaagaggaaaagctccaatctctcaacaattgccaggtgaatcggaccaggattatgctgatttctcctccaagttattgcacttgaagggtgacagaatggatttcgattttgtgaagagcagtctttctgcagagggctatgatgttgtgtatgacataaatggacgtgaagcaactgaagtggagccaatattggatgcattacctaatctagaacagtacatctactgctcttcagctggtgtataccttaaaactgattatttaccacattttgaggttgatgcaggtgacccgaagagtaggcataaaggaaagcttgagacagaaagcttgttagtatcacgagatgttaattggacttctctaaggcctgtttatatttatgggccacttaactacaatcctgttgaagagtggttcttccaccgattgaaggctggtcgcccaattccgattcctaactcagggatgcaaataactcaacttggacatgtgaaggatcttgcaaaggcttttgttcaggttcttggaaatgagaaagcaagcaagcaagtatttaacatatccggagagaaatatgtcacatttgatggattagctaaggcttgcgccaaggctggtggtttcccggaacccgagcttgttcattacaaccctaaggagttcgattttggcaagaagaaagcattcccattccgtgaccagcatttctttacatccatcgagaagtcaaaggctgagctaggatggaaacctgattttgatctggtggaaggtcttacagactcttacaacctagatttcggacgaggaacattcaggaaagcagctgatttctctacagatgatatgattcttgaaaagaaactagttccccagagctaatatttctgtttttcatttcattagttttggtttcttgctttttctccaagaagttcacaagtcattagtggcaaactatttgaaattttccttgtatattaacttcactaaaatgaaatgaatgacaactattgtcattttgccatcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattcccggggggggggcccggaccccctttccccctaaaggggggcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10534" stop="14824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10834" g_stop="11044" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11562" g_stop="11696" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="346" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="433" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12028" g_stop="12118" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="524" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12263" g_stop="12317" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="579" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12531" g_stop="12591" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="640" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13025" g_stop="13246" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="862" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="13247" i_stop="13556" i_length="310">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="13557" g_stop="13673" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="863" r_stop="979" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="13674" i_stop="13758" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="13759" g_stop="13848" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="980" r_stop="1069" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="13849" i_stop="14193" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="14194" g_stop="14523" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1070" r_stop="1399" r_length="330" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-U313631" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1399</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10834" e_stop="11044"/>
          <exon e_start="11562" e_stop="11696"/>
          <exon e_start="11847" e_stop="11933"/>
          <exon e_start="12028" e_stop="12118"/>
          <exon e_start="12263" e_stop="12317"/>
          <exon e_start="12531" e_stop="12591"/>
          <exon e_start="13025" e_stop="13246"/>
          <exon e_start="13557" e_stop="13673"/>
          <exon e_start="13759" e_stop="13848"/>
          <exon e_start="14194" e_stop="14523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGACATCAAGAAAATCATCATAGCCCTTCTTCTTCTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAGGTACCCACATATGTTGGGCTTTTTGTGGGTTTGGGTAGAATTTTTTTGTCACTCTGTTTGAATACTGGCTTGGGGTTTAGCTAGTATTTCGTAATTTGCATAAAAATCCTACCTTTATCTGTTATGGTTTCAAGAAGATTATAAAAATGTTTTCTTTACTACACATTAGGTTATACTATTGCGTGGTAATGTTTTTTTCAAATAACATGGTATCTGAACCAGTTTGTGCGATTAGTTACTTGGGTACGGGGTACCTACTACATTTCACCACTACATGTAGGATAACTCTGTCCAAAAAGTCTTGGACGGGGTGCTAACGTGATAGTGTTATCTTTGTCTTTTTAAGTTAATCTTTGGCTTATGCAAGACAGGAAGAGTGAGTATTAATTGTTTAGAATGCTGAGAATTGATGCTTTTCCATATTCCATATGTATCAAGAAGCTGCTACTTTTGCTTTGCTGCATAATGAGTTGATATGATGGGTTTTTCTGGTTTTAATTTTATATGATGGTTTTAGTATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAGGTAATCGACCCAGACTAAGCTCTCTCTAAAGTTCAAATCATTTTCTGACTTCTACGTTGTCATCCAAATTATTACCAGGCGAAGATTATAGTCTTTGATGTTTGAAGTTACCTTGGAAATTCACAATCTTTTAATGATGCACAAATGCAGGTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAGGTATGTTGGAATTCAATGAGCTCTAAAGCTTTGGGATTTCATGATTAGAGTTACTCTAAGAGTCTAAGGAATGAGAGTTTTGTTCGAACTGCAGTTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATGGTACTCATTATTAGTGTTTTATTCTATATCTCAATGTATTCCGCGTTTTGTGTTGTTGCAAACATTTTTTTCTGGTAGAAGTATGTTTCTATTGTTTCCTCCTTTTTTGGTCTATTGTTCATGAACAATTCTTTTTTTATTCAGGACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACAGTAAGCTGTGAATCCTCTTAATACATATCTGCTATGATTCTGTACCAGGAATCATTACTACTATACCAATTAGCTTGAACTATTTTACAATATTTGGTCATGAATTGGTCGCATTCATATGGCTTAGCCACTTTTTACTAGGTAAACATATTTGAATGACCGGATTGTGGTATTCCTTTTTATCTGATTATTTTAACTGCCTATGAATCTCAGGTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAGGTCAGTTTAGTAGCATATGATTATTTTAAAAGCTTATATTCTGTCTACTTGTGATACTATGTAGTAAATAACAATAGACAACAACACATTCATGACCGTCATTTTGGTTAGTAGACACATACAAACAATATTTTTGCTCAAACAAGGTGTAGTTTTACACAGGAGGTTATTGTCAATATTTCAGTTCCAAGTTCTTAAAACTAAGGTTCGACTGGAGGCACTTGCAAAATTCTTATTATTGAACCTTGTCTCCTGGCAGAGAGATTAGACTTCATAATTATCTCAGAGGTGTAACAAGTAGCAGCTTATCTGCTCGGTCCTATTTGCACCTTGCTTCAGCCTTTCTTCTAAGTTTTGGTCTTATCTTGTCCCTTATTCTTTATGTAGTTGTTTTCCCCAAGGTTAACAAAAACATCTTTCCCAATGTCAACAGGTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAGGTTAGTCAGCACATATTAAAAGAGTAGTTCACATCTTTCTATTGTAAACTTCAAGCAATGCTATCGCCCTAGAAGTTCAACGGAGATGTCTTTGCTTAGGTCCTATACATATCCAATCTTTGCAAGTGGCTTCCATTTAGTAAAAACCAGGAAATATGTCTTTTCAAATAGGAGCAACGTACTCCTTAGTTCACTTTCAGGCAATACTTCAGTTCGACAGCATTATAACATAATGAGCTTAGGAATCGTCTAAAGAATCACAGCCTTGCATCTATGTGATAATATTTTTGCTTTCGGTTGATATTGGCAGGATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAGGTAATTTTTTTTGGTCAATGTTAGCTTATATTGCTTGTAAAAGCTTTGAATGATATACAATTGACTCTCAATATTCCTAATCCAGGCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAGGTAAATATTAGTGTGTTGATTTCAGTTGTTTACCATTCATATTGAAATTCGAGACATTCTTTATCAAAGAATCAAATGATATGATCAAACTAAATGAATCATCAGTGAAGATTCACAACATGTTCACCGCCTCTTATCCTAGTCCCTTCCTAAAACACACATCAGTATGCTCACTAAAATTAACACACATTTTTGTACAATCAATCGTAGTCCAAACGAAATACTACAAGAAATATGGTTTATTTCCTCTGTTGAAGTTGTTAGCTTGTCTGTTTAATATCGGATTCTTGTCCAACACTAGTCTATCTATGTCTTCTCGTTGGTTTTAACATCGAATTTCTACAGCATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAAC</genome_strand>
        <mrna_strand>ATATGGACATCAAGAAAATCATCATAGCCCTTCTTCTTCTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG......................................................................................................................................................GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG..............................................................................................TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG................................................................................................................................................GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA.....................................................................................................................................................................................................................GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAG......................................................................................................................................................................................................................................................................................................................GATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAG.....................................................................................GCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................CATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324622" ref_strand="+" ref_description="SGN-U324622        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT3G07490.1 | Symbol: None | calcium-binding protein, putative, similar to calcium-binding protein GI:6580549 from (Lotus japonicus) | chr3:2391195-2391656 FORWARD | Aliases: F21O3.20 (evalue: 9e-58, score=220) genbank/nr: gi|28301674|emb|CAB63264.3| calcium-binding protein [Lotus corniculatus var. japonicus](evalue: 2e-58, score=229)">
      <seq>caaacttgcactttatatattctcccaaaagctactcctaatttgtctcctatttttttctcaacaaaacaaactacaaccaccccttaatagtttacaatccaaaaaccaaatgcaattcccagccattttcttcaaaactcggtgcattgtcaatctcttcaacccaatcctcctctccttactcccaaaaaaactcatctccttccttcctccatcttggttccaacaaaaacacatccattcgcggtcaccggcgccgccacaacagtcgccggtttccgtttccgacgccgttgaatcgcatcagaagagaatggactcagacgaactccgacgtatcttccaaatcttcgatcggaacggcgacggacggataacgaagaatgaattaaacagttcgttagagaatatggggatattcataccagatccggaattaatccagatgatcgagaaaatcgatgtgaatggagacggttgcgttgacatagatgagttcggttcgctttaccagaccatcatggatgaacgcgatgaagaagaagatatgcgtgaggcattcaatgtgttcgatcaaaacggcgacggattcatttgtgttgaggaattgaaatctgttctcgcatcgttagggctaaaacagggacgaacagtagaggattgtaaacaaatgattaacaaagtggacattgatggagatggaatggttaattatgctgagtttaagcagatgatgagaggaggtggttttgctgcattgagttagttttatttttattttaattatttcgtcttttttttctcactatttttatttattaaaatagacaaggaaagaataatttttatttttatttttttattgtcataggctgtgacatgtaaataaattgttactgctattattttatttttttaattgtaaaaaaaaaaaaaaaaaactcgaggggggcccggtccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18106" stop="19634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18406" g_stop="19329" g_length="924"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="924" r_length="924" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="927" polyA_stop="945"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-U324622" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>924</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18406" e_stop="19329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTGCACTTTATATATTCTCCCAAAAGCTACTCCTAATTTGTCTCCTA-TTTTTTCTCAACAAAACAAACTACAACCACCCCTTAATAGTTTACAATCCAAAAACCAAATGCAATTCCCAGCCATTTTCTTCAAAACTCGTTGCATTTTCAATCTCTTCAACCCAATCCTCCTCTCCTTACTCCCAAAAAAACTCATCTCCTTCCTTCCTCCATCTTGGTTCCACCAAAAACGCATCCATTCGCGGTCACCGGCGCCGCCACAGCAGTCGCCGGTTTCCGTTTCCGACGCGGTTGAATCGCATCAGAAGAGAATGGACTCAGACGAACTCCGACGTATCTTCCAAATCTTCGATCGGAACGGCGACGGACGGATAACGAAGAATGAATTAAACAGTTCGTTAGAGAATATGGGGATATTCATACCAGATCCGGAATTAATCCAGATGATCGAGAAAATCGATGTGAATGGAGACGGTTGCGTTGACATAGATGAGTTCGGTTCGCTTTACCAGACCATCATGGATGAACGCGATGAAGAAGAAGATATGCGTGAGGCATTCAATGTGTTCGATCAAAACGGCGACGGATTCATTTGTGTTGAGGAATTGAAATCTGTTCTCGCATCGTTAGGGCTAAAACAGGGACGAACCGTAGAGGATTGTAAACAAATGATTAACAAAGTGGACATTGATGGAGATGGAATGGTTAATTATGATGAGTTTAAGCAGATGATGAGAGGAGGTGGTTTTGCTGCATTGAGTTAGTTTTATTTTTATTTTAATTATTTCGTCTGTTTTTTTACTCACTATTTTTA-TTATTAAAATAGACAAGGAAAGAATAACTTTTATTTTTATTTTTTTAATGTCATAGGCGGTGACATGTAAATAAATTGTTACTGCTATTATTTTATTTTTTCAATT</genome_strand>
        <mrna_strand>CAAACTTGCACTTTATATATTCTCCCAAAAGCTACTCCTAATTTGTCTCCTATTTTTTTCTCAACAAAACAAACTACAACCACCCCTTAATAGTTTACAATCCAAAAACCAAATGCAATTCCCAGCCATTTTCTTCAAAACTCGGTGCATTGTCAATCTCTTCAACCCAATCCTCCTCTCCTTACTCCCAAAAAAACTCATCTCCTTCCTTCCTCCATCTTGGTTCCAACAAAAACACATCCATTCGCGGTCACCGGCGCCGCCACAACAGTCGCCGGTTTCCGTTTCCGACGCCGTTGAATCGCATCAGAAGAGAATGGACTCAGACGAACTCCGACGTATCTTCCAAATCTTCGATCGGAACGGCGACGGACGGATAACGAAGAATGAATTAAACAGTTCGTTAGAGAATATGGGGATATTCATACCAGATCCGGAATTAATCCAGATGATCGAGAAAATCGATGTGAATGGAGACGGTTGCGTTGACATAGATGAGTTCGGTTCGCTTTACCAGACCATCATGGATGAACGCGATGAAGAAGAAGATATGCGTGAGGCATTCAATGTGTTCGATCAAAACGGCGACGGATTCATTTGTGTTGAGGAATTGAAATCTGTTCTCGCATCGTTAGGGCTAAAACAGGGACGAACAGTAGAGGATTGTAAACAAATGATTAACAAAGTGGACATTGATGGAGATGGAATGGTTAATTATGCTGAGTTTAAGCAGATGATGAGAGGAGGTGGTTTTGCTGCATTGAGTTAGTTTTATTTTTATTTTAATTATTTCGTCT-TTTTTTT-CTCACTATTTTTATTTATTAAAATAGACAAGGAAAGAATAATTTTTATTTTTATTTTTTTATTGTCATAGGCTGTGACATGTAAATAAATTGTTACTGCTATTATTTTATTTTTTTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325731" ref_strand="+" ref_description="SGN-U325731        Tomato 200607 #1 [5 ESTs aligned]">
      <seq>ttgtttcggaaccaaacaactcctactagatcagtgaccttacggcgtcgtttgttcatcttctccgcaattattctattcttcattcggattcagtttctttggagaatttacttgggttttttgcttagtgttaattccctggtaattcctctctcttgccgatatagttcaattttttttatgtggtgttccgttgattgggcctcagtttgaattttttttaattttaacttacattagcattaacagctataatttgctgtgttaattaatcgtacattgtttgaatctcattaattatgtgtaatttagtgggtaagttgatgttaacggggaaaagattatattcccgtaatatttaaggtaataatctaacaattgatggtttatgagctgtttaatggctttgttaaatgtatttgatgctttgtagaatttaatctctcagtaataatataacaattgacttctgtgttttttttttctttattgacgttgcgatttgtataattttcgatctaggtgaaattctataggttttgtgttaaaatacaaacaatgtttgtctagttttggatatgaaatgctaagatggaattaggaaggggaagaggtttatttttggaattagtgaaggtatgattggattaatcagcatcggagtttagatggagtaacatggtcagtgatgattcatatagcgagacgtagttattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21145" stop="22465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21445" g_stop="22165" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-U325731" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21445" e_stop="22165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCGGAACCAAACAACTCCTACTAGATCAGTGACCTTACGGCGTCGTTTGTTCATCTTCTCCGCAATTATTCTATTCTTCATTCGGATTCAGTTTCTTTGGAGAATTTACTTGGGTTTTTTGCTTAGTGTTAATTCCCTGGTAATTCCTCTCCCTTGCCGATATAGTTCAATTTTTTTTATGTGGTGTTCCGTTGATTGGGCCTCAGTTTGAATTTTTTTTAATTTTAACTTACATTAGCATTAACAGCTATAATTTGCTGTGTTAATTAATCGTACATTGTTTGAATCTCATTAATTATGTGTAATTTAGTGGGTAAGTTGATGTTAACGGGGAAAAGATTATATTCCCGTAATATTTAAGGTAATAATCTAACAATTGATGGTTTATGAGCTGTTTAATGGCTTTGTTAAATGTATTTGATGCTTTGTAGAATTTAATCTCTCAGTAATAATATAACAATTGACTTCTGTGTTTTTTTTTTCTTTATTGACGTTGCGATTTGTATAATTTTCGATCTAGGTGAAATTCTATAGGTTTTGTGTTAAAATACAAACAATGTTTGTCTAGTTTTGGATATGAAATGCTAAGATGGAATTAGGAAGGGGAAGAGGTTTATTTTTGGAATTAGTGAAGGTATGATTGGATTAATCAGCATCGGAGTTTAGATGGAGTAACATGGTCAGTGATGATTCATATAGCGAGACGTAGTTATTTA</genome_strand>
        <mrna_strand>TTGTTTCGGAACCAAACAACTCCTACTAGATCAGTGACCTTACGGCGTCGTTTGTTCATCTTCTCCGCAATTATTCTATTCTTCATTCGGATTCAGTTTCTTTGGAGAATTTACTTGGGTTTTTTGCTTAGTGTTAATTCCCTGGTAATTCCTCTCTCTTGCCGATATAGTTCAATTTTTTTTATGTGGTGTTCCGTTGATTGGGCCTCAGTTTGAATTTTTTTTAATTTTAACTTACATTAGCATTAACAGCTATAATTTGCTGTGTTAATTAATCGTACATTGTTTGAATCTCATTAATTATGTGTAATTTAGTGGGTAAGTTGATGTTAACGGGGAAAAGATTATATTCCCGTAATATTTAAGGTAATAATCTAACAATTGATGGTTTATGAGCTGTTTAATGGCTTTGTTAAATGTATTTGATGCTTTGTAGAATTTAATCTCTCAGTAATAATATAACAATTGACTTCTGTGTTTTTTTTTTCTTTATTGACGTTGCGATTTGTATAATTTTCGATCTAGGTGAAATTCTATAGGTTTTGTGTTAAAATACAAACAATGTTTGTCTAGTTTTGGATATGAAATGCTAAGATGGAATTAGGAAGGGGAAGAGGTTTATTTTTGGAATTAGTGAAGGTATGATTGGATTAATCAGCATCGGAGTTTAGATGGAGTAACATGGTCAGTGATGATTCATATAGCGAGACGTAGTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323881" ref_strand="+" ref_description="SGN-U323881        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:16380081-16381311 REVERSE | Aliases: None(evalue: 6e-76, score=281) genbank/nr: gi|21594009|gb|AAM65927.1| unknown [Arabidopsis thaliana](evalue: 2e-74, score=282)">
      <seq>gtggaaaacgtagcttcttctcccaaaaagtcttcattctactctgggcaaagcaacatggctggtcgtggtggagtagaaaagcatcactgggatggcgttgtaccaaacgagtgccatccagatgcttctagaattttccgtcttagtgcacacctccattatgaggtggcacgtgagccactccaccatgacattgatgcgaagaagacatgtggtgttggacctggaatgtcatttgcaaatgcaatcaaggaccgagtggaagctattgggttagtgccatgtgctgtaggaggaactgcgataaaggagtgggcacacgggcaacacttgtatgtgaatatgatcaacagagctagagctgccatgagtcatggaggagaaatcaaggcattgctttggtatcaaggagagagtgatacattatctcagcattgcgtcgatacatataaggctaatatggagaagttaatacatgatgttcgtgctgatttgcatctgccatctctgccaattattcaggttgcaattgcatcaggagatgagaagtatattgaaaagattcgagaagcacaaaaggcaattgatcttccaaatgttgtatgtgttgatgccatgggattgcagctaaaggaagataatcttcatttaactacagaggctcaagttaaattaggccaaatgttggctgatgcataccttacccattttgcaccacaagaaccttgtgttgctacatcttgagaaatttgatgtattatgtgtgtgtaaactaaaaattatttaatcctggctcatgaacataacgtgagtggctgagtgctcatataagtatgttattactttgaagtaagtttactcattttctgtatctcttcatttctttactttaaaatgagtatttccttgtctgcatttcttcatttagctttcaaatattttcaattgtacaattattgtgacatataatacttatatagttttcaaatatgcaaatttaatttaaaaaaactttaaagatagcaaattgggcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22204" stop="23978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22504" g_stop="23028" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23029" i_stop="23162" i_length="134">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23163" g_stop="23683" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="1046" r_length="521" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-U323881" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1046</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22504" e_stop="23028"/>
          <exon e_start="23163" e_stop="23683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAAAATGTAGCTTATTCTCCCAAAAATGTATTCATTCTA-TCTGGGCAAAGCAACATGGCTGGTCGTGGTGGAGTAGAAAAGCATCACTGGGATGGCGTTGTACCAAACGAGTGCCATCCAGATGCTTCTAGAATTTTCCGTCTTAGTGCACACCTCCATTATGAGGTGGCACGTGAGCCACTCCACCATGACATTGATGCGAAGAAGACATGTGGTGTTGGACCTGGAATGTCATTTGCAAATGCAATCAAGGACCGAGTGGAAGCTATTGGGTTAGTGCCATGTGCTGTAGGAGGAACTGCGATAAAGGAGTGGGCACACGGGCAACACTTGTATGTGAATATGATCAACAGAGCTAGAGCTGCCATGAGTCATGGAGGAGAAATCAAGGCATTGCTTTGGTATCAAGGAGAGAGTGATACATTATCTCAGCATTGCGTCGATACATATAAGGCTAATATGGAGAAGTTAATACATGATGTTCGTGCTGATTTGCATCTGCCATCTCTGCCAATTATTCAGGTTAGCTAACACAGTTTGCTTCAAGCCTGATGTGAAACTTTTCAAGGATTTTGGCAATTGTGGTTAGGTATTTCGTGGATCAAAGTAGTTGAACATTTTCACATGTTCTTTAACCATATTGCATTGTCGTATAGGTTGCAATTGCATCAGGAGATGAGAAGTATATTGAAAAGATTCGAGAAGCACAAAAGGCAATTGATCTTCCAAATGTTGTATGTGTTGATGCCATGGGATTGCAGCTAAAGGAAGATAATCTTCATTTAACTACAGAGGCTCAAGTTAAATTAGGCCAAATGTTGGCTGATGCATACCTTACCCATTTTGCACCACAAGAACCTTGTGTTGCTACATCTTGAGAAATTTGATGTATTATGTGTGTGTAAACTAAAAATTATTTAATCCTGGCTCATGAACATAACGTGAGTGGCTGAGTGCTCATATAAGTATGTTATTACTTTGAAGTAAGTTTACTCATTTTCTGTATCTCTTCATTTCTTTACTTTAAAATGAGTATTTCCTTGTCTGCATTTCTTCATTTAGCTTTCAAATATTTTCAATTGTACAATTATTGTGACATATAATACTTATATAGTTTTCAAATATGCAAATTTAATTTAAAAAAACTTTAAAGATAGCAAATTGGGCAACAACTTTG</genome_strand>
        <mrna_strand>GTGGAAAACGTAGCTTCTTCTCCCAAAAA-GTCTTCATTCTACTCTGGGCAAAGCAACATGGCTGGTCGTGGTGGAGTAGAAAAGCATCACTGGGATGGCGTTGTACCAAACGAGTGCCATCCAGATGCTTCTAGAATTTTCCGTCTTAGTGCACACCTCCATTATGAGGTGGCACGTGAGCCACTCCACCATGACATTGATGCGAAGAAGACATGTGGTGTTGGACCTGGAATGTCATTTGCAAATGCAATCAAGGACCGAGTGGAAGCTATTGGGTTAGTGCCATGTGCTGTAGGAGGAACTGCGATAAAGGAGTGGGCACACGGGCAACACTTGTATGTGAATATGATCAACAGAGCTAGAGCTGCCATGAGTCATGGAGGAGAAATCAAGGCATTGCTTTGGTATCAAGGAGAGAGTGATACATTATCTCAGCATTGCGTCGATACATATAAGGCTAATATGGAGAAGTTAATACATGATGTTCGTGCTGATTTGCATCTGCCATCTCTGCCAATTATTCAG......................................................................................................................................GTTGCAATTGCATCAGGAGATGAGAAGTATATTGAAAAGATTCGAGAAGCACAAAAGGCAATTGATCTTCCAAATGTTGTATGTGTTGATGCCATGGGATTGCAGCTAAAGGAAGATAATCTTCATTTAACTACAGAGGCTCAAGTTAAATTAGGCCAAATGTTGGCTGATGCATACCTTACCCATTTTGCACCACAAGAACCTTGTGTTGCTACATCTTGAGAAATTTGATGTATTATGTGTGTGTAAACTAAAAATTATTTAATCCTGGCTCATGAACATAACGTGAGTGGCTGAGTGCTCATATAAGTATGTTATTACTTTGAAGTAAGTTTACTCATTTTCTGTATCTCTTCATTTCTTTACTTTAAAATGAGTATTTCCTTGTCTGCATTTCTTCATTTAGCTTTCAAATATTTTCAATTGTACAATTATTGTGACATATAATACTTATATAGTTTTCAAATATGCAAATTTAATTTAAAAAAACTTTAAAGATAGCAAATTGGGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324163" ref_strand="+" ref_description="SGN-U324163        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | nitrogen regulation family protein, similar to NITROGEN REGULATION PROTEIN NIFR3 (SP:Q08111) (Rhodobacter capsulatus); contains Pfam domain PF01207: Dihydrouridine synthase (Dus) | chr3:18411764-18415791 REVERSE | Aliases: T9C5.230(evalue: 2e-27, score=119) genbank/nr: gi|50926664|ref|XP_473279.1| OSJNBa0081C01.15 [Oryza sativa (japonica cultivar-group)] >gi|38346764|emb|CAD41143.2| OSJNBa0081C01.15 [Oryza sativa (japonica cultivar-group)] (evalue: 1e-29, score=133)">
      <seq>gaagagccgtcacaccagtttcgtatcctccaaaaatgtgttatatttgaaggagatctgacttggggtgaggtgatatttttagaggatctgggcaacatagcctccaattcagaagttataatctgagagatgctgttgcctcagaaatacaaaattaatctttgtaggcatgcttccttgtgacacatcaaataatgaacaatctgtatgagaaaagcattgttcatatatagttgatgatggtttttctatctgtttttatgaatatctacaggttgtttctgcttatgttttgcaacatgtaacaactttatcttataggtgcttcatctgtgatggttgcaagaggagccatgtggaatgcttctatattctcttctgagggaaaaacaccatgggaagatgtcaaaagagagtatgtgagaaagagtatattgtgggataatgatatcaaaagtacaaagcacaccctgaaggaaatgattacacactattcttcccttgggagcccagaggggctggcagtaattaaatcagatacctttgcagatctagcgaaactttatggagaagaggaatactatgaatatgtctcagaaagccggaggaagcagcagatgaaataagataagtagttcaccctcactaatcatacaagtcaatacaccaaggtgtcgattaaattggactaccgttataatttataaagcaagagatagaggtggactttgcacatgaggttgttaatgagttctgacttccttcccgtgacgcgactatacccaactgctatcccttgtttgagtttgaagtaacattccacaaccgctgaacgaatccatcagtttgaacaatattcattgtaagctgtacactaaattgaacttagtgggtttacctaacctgcataaaccaacacgatagctatgtatccgttggatcataaaggggtacaattgaagattttgctttattcatgctgcagacatcatttgcaaatttaatatatttatgtttagtgatatgactgaaatcatgtacaactaaaccaatgtggaggtagtataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26604" stop="23576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26304" g_stop="25874" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25873" i_stop="25672" i_length="202">
            <donor d_prob="0.825" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25671" g_stop="25544" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="559" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25543" i_stop="24389" i_length="1155">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24388" g_stop="23876" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="1072" r_length="513" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-U324163" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1072</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26304" e_stop="25874"/>
          <exon e_start="25671" e_stop="25544"/>
          <exon e_start="24388" e_stop="23876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGCCGTCACACCAGTTTCGGATCCTCCAAAAATGTGTTATATTTGAAGGAGATCTGACTTGGGGTGAGGTGATATTTTTAAAGGATCTGGGCAACATAGCCTCCAATTCAGAAGTTATAATCTGAGAGATGCTGTTGCCTCAGAAATACAAAATTAATCTTTGTAGGCATGCTTCCTTGTGACACATCAAATAATGAACAATCTGTATGAGAAAAGCATTTTTCATATATAGTTGATGATGGTTTTTCTATCTGTTTTTATGAATATCTACAGGTTGTTTCTGCTTATGTTTTGCAACATGTAACAACTTTATCTTATAGGTGCTTCATCTGTGATGGTTGCAAGAGGAGCCATGTGGAATGCTTCTATATTCTCTTCTGAGGGAAAAACACCATGGGAAGATGTCAAAAGAGAGTATGTGAGAAAGGTATTCGGCCTGTGAACTAGATGTGAATCAATCTCTTATTACATGTTAAATTAACTCTAAATTAAGTAGCCACTTTGTCCATCCAGCATATAAATGAAATAGACTAAAATATATCCAGCATTTGTTTGAAATTGAAGTCATTGACTTCCTATATGCTTTTCACTGCAAATGTAAGTGACAGGTCTGGGTGCTTTGATTTCAGAGTATATTGTGGGATAATGATATCAAAAGTACAAAGCACACCCTGAAGGAAATGATTACACACTATTCTTCCCTTGGGAGCCCAGAGGGGCTGGCAGTAATTAAATCAGATACCTTTGCAGATGTAGCGTAAGTTTTTCTATCTGCTGCCGTTTACTTCCACCTGTGGTTACATGTGTTGGGATCAAATTTAGTTGCTGTTCAGTTAGTTTCCAAATTAAGTTGTTCATGTTCTGATAATGTATGACATCTGCTTCACCTCATCCCCTTGCTTCTTTTTTTACATAATTGCGTAGTCTGCTCATTCTAAAAGCTACTCAAAAGTTTGACTCAGTAAAAAGGAGGATTTATATTGTGAAAAGGTGCATGAGGTTCTTAATCTTCTCTTTCATCCTTGTACCATTATTCACTTTGAGATTTGTCCAGCATTGGCAGAGTCCATAAGTCCACAACCTTTACTATTATCATTGTTACAACTCTTCACAAATAAGCTGTCGATGGATATAACTAGCCAAGTAACTATGATTGGACTAATTACGTGTGAAATATGCTATATTTGAGAGGAGGTAACGAGAACAGGGAGAGAAGAACATTATTTCTCTCATTTGGCAAAAAAAGTTACTTATTGGAAGGAGTAACACCTTTTCCAACTCCTCTGTAAGTGGTCGAAGATGAGTTTGAGAGGGCATTTGGAAGATTTTATTCCCAAAGGTTTCTTCCTTGGACAGACAGCTACCTGTGAAGCAGTACTTATCCAAGATGATCTTCCCAATAAGAAGAGCATGAAGATTGTGGTTCTAATAGATAGTTCATGTGTGAATGGTATGAAAATTTTGCTAATCATCTTTCTTTGCTAAATGGGGTGGTGGAACATGTTCCTTTTCGTTTGGGATAGTGTATTACTGATGTCAGTGATGTGAGCATTTATTTGTATGGAGGGGTTATACTGTATGTACCACTGGTTAAGAATTTTGCACACTTCTCGCATGCATCATGTGGCTGCTTCAAAAGAGTGAAATGGGGAATATATGTGCGAAGTCTATATTTAAAAAATTGCGTACCCAGAGAATTTTGATAGTAATAAGTAGGGAGTTGGTTGTATTATCTGTCTTGCATGTTCATTTGCTTCCAAGGCGCCACTGACATAAAGTCACGTCAACAGCCTAAGATTTTATCACTTCTTATATATGAAGTCATCGTCAAACATATTTTCTCCTTCCTCTGGGTGTTTCTTCTGTAGGGCACCTACTAATTTAACTGACTGCATACTTACTGACTTTTCAGGAAACTTTATGGAGAAGAGGAATACTATGAATATGTCTCAGAAAGCCGGAGGAAGCAGCAGATGAAATAAGATAAGTAGTTCACCCTCACTAATCATACAAGTCAATACACCAAGGTGTCGATTAAATTGGACTACCGTTATAATTTATAAAGCAAGAGATAGAGGTGGACTTTGCACATGAGGTTGTTAATGAGTTCTGACTTCCTTCCCGTGACGCGACTATACCCAACTGCTATCCCTTGTTTGAGTTTGAAGTAACATTCCACAACCGCTGAACGAATCCATCAGTTTGAACAATATTCATTGTAGGCTGTACACTAAATTGAACTTAGTGGGTTTACCTAACCTGCATAAACCAACACGATAGCTATGTATCCGTTGGATCATAAGGGGGTACAATTGAAGTTTTTGCTTTATTCATGCTGCAGACATCATTTGCAAATTTAATATATTTATGTTTAGTGATATGACTGAAATCATGTACAACTAAACAAATTTGAAGTTAGTATAAA</genome_strand>
        <mrna_strand>GAAGAGCCGTCACACCAGTTTCGTATCCTCCAAAAATGTGTTATATTTGAAGGAGATCTGACTTGGGGTGAGGTGATATTTTTAGAGGATCTGGGCAACATAGCCTCCAATTCAGAAGTTATAATCTGAGAGATGCTGTTGCCTCAGAAATACAAAATTAATCTTTGTAGGCATGCTTCCTTGTGACACATCAAATAATGAACAATCTGTATGAGAAAAGCATTGTTCATATATAGTTGATGATGGTTTTTCTATCTGTTTTTATGAATATCTACAGGTTGTTTCTGCTTATGTTTTGCAACATGTAACAACTTTATCTTATAGGTGCTTCATCTGTGATGGTTGCAAGAGGAGCCATGTGGAATGCTTCTATATTCTCTTCTGAGGGAAAAACACCATGGGAAGATGTCAAAAGAGAGTATGTGAGAAAG..........................................................................................................................................................................................................AGTATATTGTGGGATAATGATATCAAAAGTACAAAGCACACCCTGAAGGAAATGATTACACACTATTCTTCCCTTGGGAGCCCAGAGGGGCTGGCAGTAATTAAATCAGATACCTTTGCAGATCTAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTTATGGAGAAGAGGAATACTATGAATATGTCTCAGAAAGCCGGAGGAAGCAGCAGATGAAATAAGATAAGTAGTTCACCCTCACTAATCATACAAGTCAATACACCAAGGTGTCGATTAAATTGGACTACCGTTATAATTTATAAAGCAAGAGATAGAGGTGGACTTTGCACATGAGGTTGTTAATGAGTTCTGACTTCCTTCCCGTGACGCGACTATACCCAACTGCTATCCCTTGTTTGAGTTTGAAGTAACATTCCACAACCGCTGAACGAATCCATCAGTTTGAACAATATTCATTGTAAGCTGTACACTAAATTGAACTTAGTGGGTTTACCTAACCTGCATAAACCAACACGATAGCTATGTATCCGTTGGATCATAAAGGGGTACAATTGAAGATTTTGCTTTATTCATGCTGCAGACATCATTTGCAAATTTAATATATTTATGTTTAGTGATATGACTGAAATCATGTACAACTAAACCAATGTGGAGGTAGTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341362" ref_strand="+" ref_description="SGN-U341362        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aactcttcacaaataagctgtcgatggatataactagccaagtaactatgattggactaattacgtgtgaaatatgctatatttgagaggaggtaacgagaacagggagagaagaacattatttctctcatttggcaaaaaaagttacttattggaaggagtaacaccttttccaactcctctgtaagtggtcgaagatgagtttgagagggcatttggaagattttattcccaaaggtttcttccttggacagacagctacctgtgaagcagtacttatccaagatgatcttcccaataagaagagcatgaagattgtggttctaatagatagttcatgtgtgaatggtatgaaaattttgctaatcatctttctttgctaaatggggtggtggaacatgttccttttcgtttgggatagtgtattactgatgtcagtgatgtgagcatttatttgtatggaggggttatactgtatgtaccactggttaagaattttgcacacttctcgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25498" stop="24384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25198" g_stop="24684" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-U341362" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25198" e_stop="24684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTCACAAATAAGCTGTCGATGGATATAACTAGCCAAGTAACTATGATTGGACTAATTACGTGTGAAATATGCTATATTTGAGAGGAGGTAACGAGAACAGGGAGAGAAGAACATTATTTCTCTCATTTGGCAAAAAAAGTTACTTATTGGAAGGAGTAACACCTTTTCCAACTCCTCTGTAAGTGGTCGAAGATGAGTTTGAGAGGGCATTTGGAAGATTTTATTCCCAAAGGTTTCTTCCTTGGACAGACAGCTACCTGTGAAGCAGTACTTATCCAAGATGATCTTCCCAATAAGAAGAGCATGAAGATTGTGGTTCTAATAGATAGTTCATGTGTGAATGGTATGAAAATTTTGCTAATCATCTTTCTTTGCTAAATGGGGTGGTGGAACATGTTCCTTTTCGTTTGGGATAGTGTATTACTGATGTCAGTGATGTGAGCATTTATTTGTATGGAGGGGTTATACTGTATGTACCACTGGTTAAGAATTTTGCACACTTCTCGCATG</genome_strand>
        <mrna_strand>AACTCTTCACAAATAAGCTGTCGATGGATATAACTAGCCAAGTAACTATGATTGGACTAATTACGTGTGAAATATGCTATATTTGAGAGGAGGTAACGAGAACAGGGAGAGAAGAACATTATTTCTCTCATTTGGCAAAAAAAGTTACTTATTGGAAGGAGTAACACCTTTTCCAACTCCTCTGTAAGTGGTCGAAGATGAGTTTGAGAGGGCATTTGGAAGATTTTATTCCCAAAGGTTTCTTCCTTGGACAGACAGCTACCTGTGAAGCAGTACTTATCCAAGATGATCTTCCCAATAAGAAGAGCATGAAGATTGTGGTTCTAATAGATAGTTCATGTGTGAATGGTATGAAAATTTTGCTAATCATCTTTCTTTGCTAAATGGGGTGGTGGAACATGTTCCTTTTCGTTTGGGATAGTGTATTACTGATGTCAGTGATGTGAGCATTTATTTGTATGGAGGGGTTATACTGTATGTACCACTGGTTAAGAATTTTGCACACTTCTCGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337972" ref_strand="+" ref_description="SGN-U337972        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | nitrogen regulation family protein, similar to NITROGEN REGULATION PROTEIN NIFR3 (SP:Q08111) (Rhodobacter capsulatus); contains Pfam domain PF01207: Dihydrouridine synthase (Dus) | chr3:18411764-18415791 REVERSE | Aliases: T9C5.230(evalue: 1e-23, score=107) genbank/nr: gi|50926664|ref|XP_473279.1| OSJNBa0081C01.15 [Oryza sativa (japonica cultivar-group)] >gi|38346764|emb|CAD41143.2| OSJNBa0081C01.15 [Oryza sativa (japonica cultivar-group)] (evalue: 2e-24, score=116)">
      <seq>gagccatgtggaatgcttctattttctcttctgagggaaaaacaccatgggaagatgtcaaaagagagtatgtgagaaagagtatattgtgggataatgatatcaaaagtacaaagcacaccctgaaggaaatgataacacactattcttcccttgggcgcccggaggggctggcagtaattaaatcaaataccttggcagatctggcgtaagtttttatatcttctgccgttacttccacccgtggttacatgtgttgggatcaaatttagttgctgttcagttagtttccaaattaagttgttcatgttctgataatgtatgacatctgcttcacctcatccccttgcttgtttttttttacataattgcgtagtctgctcattctaaaagctactcaaaagtttgactcagtaaaaacgaggatttatattgtgaaaaggtgcatgaggttcttaatcttctctttcatccttgtattattcactttgagatttgtccaacattggcagagtccataagtccacaacctttactattatcattgttacaactcttcacatataagctgtcgatggatataactagccaattaactatgattggactaattagttgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26253" stop="24827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25953" g_stop="25874" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25873" i_stop="25672" i_length="202">
            <donor d_prob="0.825" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25671" g_stop="25129" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="621" r_length="541" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-U337972" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25953" e_stop="25874"/>
          <exon e_start="25671" e_stop="25129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCCATGTGGAATGCTTCTATATTCTCTTCTGAGGGAAAAACACCATGGGAAGATGTCAAAAGAGAGTATGTGAGAAAGGTATTCGGCCTGTGAACTAGATGTGAATCAATCTCTTATTACATGTTAAATTAACTCTAAATTAAGTAGCCACTTTGTCCATCCAGCATATAAATGAAATAGACTAAAATATATCCAGCATTTGTTTGAAATTGAAGTCATTGACTTCCTATATGCTTTTCACTGCAAATGTAAGTGACAGGTCTGGGTGCTTTGATTTCAGAGTATATTGTGGGATAATGATATCAAAAGTACAAAGCACACCCTGAAGGAAATGATTACACACTATTCTTCCCTTGGGAGCCCAGAGGGGCTGGCAGTAATTAAATCAGATACCTTTGCAGATGTAGCGTAAGTTTTTCTATCTGCTGCCGTTTACTTCCACCTGTGGTTACATGTGTTGGGATCAAATTTAGTTGCTGTTCAGTTAGTTTCCAAATTAAGTTGTTCATGTTCTGATAATGTATGACATCTGCTTCACCTCATCCCCTTGC-T-TCTTTTTTTACATAATTGCGTAGTCTGCTCATTCTAAAAGCTACTCAAAAGTTTGACTCAGTAAAAAGGAGGATTTATATTGTGAAAAGGTGCATGAGGTTCTTAATCTTCTCTTTCATCCTTGTACCATTATTCACTTTGAGATTTGTCCAGCATTGGCAGAGTCCATAAGTCCACAACCTTTACTATTATCATTGTTACAACTCTTCACAAATAAGCTGTCGATGGATATAACTAGCCAAGTAACTATGATTGGACTAATTACGTGTGA</genome_strand>
        <mrna_strand>GAGCCATGTGGAATGCTTCTATTTTCTCTTCTGAGGGAAAAACACCATGGGAAGATGTCAAAAGAGAGTATGTGAGAAAG..........................................................................................................................................................................................................AGTATATTGTGGGATAATGATATCAAAAGTACAAAGCACACCCTGAAGGAAATGATAACACACTATTCTTCCCTTGGGCGCCCGGAGGGGCTGGCAGTAATTAAATCAAATACCTTGGCAGATCTGGCGTAAGTTTTTATATCTTCTGCCG-TTACTTCCACCCGTGGTTACATGTGTTGGGATCAAATTTAGTTGCTGTTCAGTTAGTTTCCAAATTAAGTTGTTCATGTTCTGATAATGTATGACATCTGCTTCACCTCATCCCCTTGCTTGTTTTTTTTTACATAATTGCGTAGTCTGCTCATTCTAAAAGCTACTCAAAAGTTTGACTCAGTAAAAACGAGGATTTATATTGTGAAAAGGTGCATGAGGTTCTTAATCTTCTCTTTCATCCTTGT---ATTATTCACTTTGAGATTTGTCCAACATTGGCAGAGTCCATAAGTCCACAACCTTTACTATTATCATTGTTACAACTCTTCACATATAAGCTGTCGATGGATATAACTAGCCAATTAACTATGATTGGACTAATTAGTTGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326229" ref_strand="+" ref_description="SGN-U326229        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | nitrogen regulation family protein, similar to NITROGEN REGULATION PROTEIN NIFR3 (SP:Q08111) (Rhodobacter capsulatus); contains Pfam domain PF01207: Dihydrouridine synthase (Dus) | chr3:18411764-18415791 REVERSE | Aliases: T9C5.230(evalue: 4e-52, score=201) genbank/nr: gi|15229183|ref|NP_190533.1| nitrogen regulation protein family (NIFR3) [Arabidopsis thaliana] gi|11358454|pir||T46241 hypothetical protein T9C5.230 - Arabidopsis thaliana gi|6561964|emb|CAB62468.1| putative protein [Arabidopsis thaliana](evalue: 2e-50, score=201)">
      <seq>cggacccttccgcggcgccgctcgtcaattgcaaccactccgatactccgccgtggttggtcgccgccggctgggaaaattcttcctctcttttcaagtcaaggcatcgcactaacttatctgcctcgtcagaatgatggattacagaaacaagctagtcttggctccaatggtccgagtgggtacattgccgtttaggctgcttgctgcccaatatggagctgacataacctatggagaggagattattgatcataagatcatcaaatgtgagcggcgagttaatggtgtaaggatgtagcagcagttgacgtaaacatgggatgccccaagtcattctctattagtggaggcatgggtgctgcactgttgagcaaaccagagctcatccatgatattttgacaacattgcgaaggaacttggatgtaccaataacatgcaaaattaggttattaaaagatccgcaagatacagtggaattggcacgacgaattgagatgactggtgtctctgctcttgctgtccatggaaagaaagttccagataggccaagagatcctgcaaagtggaatgagattgctgatgttgctgccgctctctctattccagttatagcaaatggtgatgtttttgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32419" stop="26418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32119" g_stop="32017" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32016" i_stop="31171" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31170" g_stop="31093" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="181" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31092" i_stop="30906" i_length="187">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30905" g_stop="30800" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="287" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30799" i_stop="27922" i_length="2878">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27921" g_stop="27813" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="396" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27812" i_stop="27711" i_length="102">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.186" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27710" g_stop="27574" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="533" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27573" i_stop="26823" i_length="751">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26822" g_stop="26718" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="638" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-U326229" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32119" e_stop="32017"/>
          <exon e_start="31170" e_stop="31093"/>
          <exon e_start="30905" e_stop="30800"/>
          <exon e_start="27921" e_stop="27813"/>
          <exon e_start="27710" e_stop="27574"/>
          <exon e_start="26822" e_stop="26718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGACCCTTCCGCGGCGCCGCTCGTCAATTGCAACCACTCCGATACTCCGCCGTGGTTGGTCGCCGCCGGCTGGGAAAATTCTTCCTCTCTTTTCAAGTCAAGGTCAGTAACAACTGTTGACCTGCTCTTTCTCTTTACTGGTCAATGTTTATATTTAGAGACGAGAGACTCATCAGTATTATTTTTTTAAACTTTACTGAGCAAATACTGTAAGATCCGAAGCTATATATGTAAATTGTATCGTTGAAGTCTAATTGTCCCTCGGAATTTGCAATTGCTGAAACGTAGGTTGGCTTTGAGTGAGAGCATCAGGATTTTATTTGACAGCTGATGTTTTGATTGAATAAATTTCTGTTCTTAATTGTCCATATAACGTAAGATCCAAATCTGTATATACATTGTGTTTCTTAAATGCTAGCCATGGTCAGGAATTATGTACAATTTGTTACTTGCTCAGTCTATTTTTACTTGTCCATGAAACAAAGTCAATAATTTGGAAAATAAGTATAGATAATAATAAGGGTAAAATTATTTGGGATGACCTAGTGATTTGAGCTTGGGACTTCCACGTTGGATATCTCAAGTTTGTAACCCCTTGCCAATAAAAATAAGAGGTTTGCCTTTTGGGTTGAGCTCATTACCCGGGGCTTGCCTAATGCGGATTACCTATCGTGTGTAGTTTGGGAGCTGTGGTGTGCACCCAAAGGTAGCGGCTACAGTTTCCCTTGTCATATAAGAAAGAAAAAAAAAGTAATAAGGGTAAAATGGTAAATTATCTTTTAATTTTCTTAACTGGACTAGTAAAATTGGACATCTTTTTTAAGTGTAGTGGACAATAAAAATGGATGGAGAGAATAATTTATAAGCATAACAGCTATTCGTAACCTGTAACTCTTTGTACAGTATACTGACTATACTCAATTTGGTCAATGTATACTATTGTCTCAGGCATCGCACTAACTTATCTGCCTCGTCAGAATGATGGATTACAGAAACAAGCTAGTCTTGGCTCCAATGGTCCGAGTGGTAAGTACCTTCAAGTGAATTTAAATTAGAGCAGTCCTGTTTTGGTACTTCATGTTCCCATTTCTAGATGTGTGTGGCTCTTTTTAAATTCACCAGGAAGCATAGTTAAAACTGCTCTTAATGTGTTTTTTACTTTACTAAATGATGCTTTAAATGCCCATGTGTATTCTTCATTGCTTTTGGCCAGGGTACATTGCCGTTTAGGCTGCTTGCTGCCCAATATGGAGCTGACATAACCTATGGAGAGGAGATTATTGATCATAAGATCATCAAATGTGAGCGGCGAGTTAATGGTAATTTCTTGTTCATCCTTTTGCATCCTTCGTCTGGATTATCCTTGAACATTTTTCATGTAACATGTAAACTAAATACATACTACCTCTATTGAAAGAATGAAACGAACAGTTCCTAAAAATGCCAAGGCACCAATTACGTGACCACTATTGTTCTTATTCAAGACCCTTTCTTTGATGAATATAACCTTGGTTTGAATGTGATGTATATGTCAATTTGAGTACTTCTATATTTCTAATGGATTATCAGATCTTATGCTTTTATGTTAATGAAAGAAGGATGTGAACTCTTAATTTCATCATGTTATGGCTCTCTAGTCTCTATCAAGAAAATGAGCCTTTTATTTGAAGAAATTTGATAACGAGAAGTTTTACATGGATCTGTGGCTTAAATGGAATATTTGAGAGATGATTGAGCATTTACTGATGATAGTTAATATCGGAACGTTAAAACCTTGAACTGAATATTTTAGTGTGAGTTGATTGCCCCTCGAATACCAAACAAGGATTTGTAAATTATTATATAGGTCGTGTACAGTGGTGGAGCCACCTTGTTCTCACGGGGTTCATCCGAACCCCCTTCACCGGAAAATTAGTACTATTTATATATGGTTAAAATTATTTTTTAGGTATACATAGTAAATGTCGAACCCCCTCGACTATTTCGTTTGTCTATTTCTTCAGATTTTGAACCCCCTTATTGAAAAAATCTTCATGTATATTGACATAGTATAGATGACATCTGATACCTGATTCAGTAGCTTTCCAAGCGGAGAAGATTTATTCAAAGTCATTACTCTGTAAAGGCTTTATGACTTGCTGTATATGTTGTTGACTTTGCAGTTAGCATTATGCTTTATGCCTTGCATTTTACTTCATATTTTTATTTTTAGGTATTATGAGCATAGATGAATAGGATTCACAGTCACTTATGAAAAAGAAACGAAAAGATAAATATCATAGTGAAGCCTGCCTTTAGATGCAGGTTACCTAGTACATTTGAGATGGCAAAAGAAAAAAGTTGCTAAACTCGATGCTTCTAAAATATTTCTCATGAGTTTTACCCCTTATTCCTTAGATGTCTTAGGGACTACTGACATAGTGGAGAAGGGAACTGATAATGTTGTTTTCAGAACGTGCCCCGAGGAGAGAAATCGAGTTGTATTTCAGATGGGCACTTCTGATGCCATGAGGGCTCTCAAAGCTGCTGAAATAGTGTATGTTCCATTCAGTTCTTTCTTTTTTCCTCCCTTATCATAACTAATTTTCGTACTTTAAATCCATCTGCTCTCCTCCCCCCCCCCCTCCCCCCCCCTCACGCACACACAATCTGTTTTTCACATGGTCATACACAGAGTCTTATAGACAGACAGATTGGATTGGATTCCTATGATGAAATCTCGCTCTTGTTTCCACTTGTTTTATTTTCAATATGCGTCTTCTAGCATTTTTGGTGGTATTTCTTTTTAAGTAATGTGATGCATTATGTAGTATATCTCTGTTGGTTATGTAAGAACTCGTATGGTTGAGTTTATGAACAGACAAGCAGTTTCTCTAGCGAAACCAGATACCCTCACCTCCATCCACACCCAAAAAAGGCAAAAAAGACAAACATTCATTTTGAGCAAATACAAATGCCATTAATTAATAACTCCTTTCTGCCGGTTTGGGGTTCCTAATAGGTTGTGTCATTCTCTTGCTGAGTATAGTGGCACCTGCATAAGTCTTCTTGTGCCATGAAACGTTTTCTTGATAACAACAGATATTATTGGGGGGTTTTACAAGGGGTGAGGTAGAGTATGTATGTCCTAATTTCCATACTGAACATCAAGGTTAGAAGTGGTCTTGTTGGATTTAAGAGGTAGATTTCATATATTCCAGTTCTCTATATTATACATCAATGTTAGAAATGTTCTTGTTGGAATTCTTTACTAATTTGCTTGAGGAACTGTCCTTTTTCTTTGATGAAGTAATGTGTTTTGTTAAGGAGCATCTAGAAGATGCAACTTACTAAAGAAATCTGCTAGCAATTACTAGTAAAGTGAAGTTGCAATTCCTTATACAAAGTGCTACCCTAAGCGTAGGGAGCTTACAATCTGAAAAAATGGTCGGGGCTAGTTACAGACTCATAGGTGTCAATTTAATCAGGCAAAACAGACTTAGCAGTCACTTTGCTTTGAGGGAAGAGTTTTGAGTTGAAATACCATCAAAGCATCTACTGTTTCTTTCAATCCACAGACACCAAAAAATTTATTCCAGGAATCATTACCCGGATCTTCTTGATGGCCTTGTCAACTCTCAAGTGGCAGTGTGGCACCAGCTTGAATAAGCTTCCTTCACATGCACAACATCACCCATTTCAGCCCAAGGAGGAAAAATAGAAATTATTGAGGAACTGTTTTTGAAGCTGGACTCTCTGCTTTTGCTTTTCATTTTGTCAAATGATGTCATCGTTTTCTGCATTGGAAGTCTAGATTTTTAAGTTTTTCATGTTGTTAGCAGTATTTAGAATCGACTTTTCTGACATTAATTGGATGATGGATATAGCTGATGTTCGTTTATAAATAACAGGCTTGTCAGAGTTAAATTTATTAATGTTGAACTGCAACAAGCTGCAGTGATATGAATTCGCTTCTCCAACAATTTTCTCTATATTGAATAGCTATCATAATATTCTGTGAATTGCATTCTTATCATGATTCTTAATATACTTTCTTAAGATAGTGAAGAAACTTCAAAGCACATGCTTGAGTTTCTTTGCTCTTTTTAGGTCTTTACTTCTGACTTGGTCATGAAAGCTTAAACCAGCAATTATGCTCGATATGGGTAGGAAGTTAGTGCATCTGATCGAATTATTTGATGGTCTGTCCCTTTTCAGGTGTAAGGATGTAGCAGCAGTTGACGTAAACATGGGATGCCCCAAGTCATTCTCTATTAGTGGAGGCATGGGTGCTGCACTGTTGAGCAAACCAGAGCTCATCCATGATGTATGCAATTACTGTTGCTCCTTCATCAGTATCCGAGTTTCCTTCTAATATAGCATAGGAGTGCATGTCCTGTTCATAATGCTTCCCTTCTTCTGAACTCAGATTTTGACAACATTGCGAAGGAACTTGGATGTACCAATAACATGCAAAATTAGGTTATTAAAAGATCCGCAAGATACAGTGGAATTGGCACGACGAATTGAGATGACTGGTGTCTCTGCTCTTGCTGTCCATGGAAGGTACATGATTTCTGTATATCTGCTTCTCATGTTTTTTATAAACTTAACCTTGTGCTCTGTCATCAATTAAGCCTTTGTATATCCAGTAATCCAGATTCCTACTTTGATGGTCAAGTTATTTCATATAGTTGTTGGAGTATTTTTGTGAAACGAGGTGGGGCTTGCTGTAGATTCAAACAGTCCACCTTAGAAGCGAGAGAAGAACCATTTAGTCTGCTTCTTGGTTATGTTGGAAAGTATTGTCTCTTCTGTATGTTATTGCTACTTTCCCCGATTACTCTCTCCTTTCACTTTTTGTGATTGTGAATTTTAACTAATATTGAAGTTTCATTGTGAAGATGCCAATTCATGAATTACTAACCACATCTAGGGTTAACAGGATTGTTTTAGGTTCTGATCTTCCTTCCATTTGCTGAGGGGTGGGTTCCATGAATTATGTTGTGCTATCTTTATGTGTAGCCAGTGCTAGAAGATTTAAAATACAGAAATTGAACATGCTATACTTGGAAACGATGTCAAAACTGATTTATTGAGGGTGCAATTGATAATTCTCTCGCAGCTACTCTTACTATGTCTCTGTTACACAGAATATGGTCACGGCTCATTTTTGTTTGTTTTTTGTTTGGGATAAGGAGTCTTCACTGGTTGCTTGTTTGAGCTTCCTCCTATTTTGGGCTTTTAACTTGAAGTGGAGTGATATTAGTATTTCCTCTGACTAGCAAATGTTGCATGATTGTTGATTGAACTACAGGAAAGTTCCAGATAGGCCAAGAGATCCTGCAAAGTGGAATGAGATTGCTGATGTTGCTGCCGCTCTCTCTATTCCAGTTATAGCAAATGGTGATGTTTTTGAATA</genome_strand>
        <mrna_strand>CGGACCCTTCCGCGGCGCCGCTCGTCAATTGCAACCACTCCGATACTCCGCCGTGGTTGGTCGCCGCCGGCTGGGAAAATTCTTCCTCTCTTTTCAAGTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGCACTAACTTATCTGCCTCGTCAGAATGATGGATTACAGAAACAAGCTAGTCTTGGCTCCAATGGTCCGAGTG...........................................................................................................................................................................................GGTACATTGCCGTTTAGGCTGCTTGCTGCCCAATATGGAGCTGACATAACCTATGGAGAGGAGATTATTGATCATAAGATCATCAAATGTGAGCGGCGAGTTAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAGGATGTAGCAGCAGTTGACGTAAACATGGGATGCCCCAAGTCATTCTCTATTAGTGGAGGCATGGGTGCTGCACTGTTGAGCAAACCAGAGCTCATCCATGAT......................................................................................................ATTTTGACAACATTGCGAAGGAACTTGGATGTACCAATAACATGCAAAATTAGGTTATTAAAAGATCCGCAAGATACAGTGGAATTGGCACGACGAATTGAGATGACTGGTGTCTCTGCTCTTGCTGTCCATGGAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTTCCAGATAGGCCAAGAGATCCTGCAAAGTGGAATGAGATTGCTGATGTTGCTGCCGCTCTCTCTATTCCAGTTATAGCAAATGGTGATGTTTTTGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338317" ref_strand="+" ref_description="SGN-U338317        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | nitrogen regulation family protein, similar to NITROGEN REGULATION PROTEIN NIFR3 (SP:Q08111) (Rhodobacter capsulatus); contains Pfam domain PF01207: Dihydrouridine synthase (Dus) | chr3:18411764-18415791 REVERSE | Aliases: T9C5.230(evalue: 8e-75, score=201) genbank/nr: gi|15229183|ref|NP_190533.1| nitrogen regulation protein family (NIFR3) [Arabidopsis thaliana] gi|11358454|pir||T46241 hypothetical protein T9C5.230 - Arabidopsis thaliana gi|6561964|emb|CAB62468.1| putative protein [Arabidopsis thaliana](evalue: 6e-73, score=201)">
      <seq>gctcgtcaattgcaaccactccgatactccgtcgtggttggtcgccgccggctgggaaaattcttcctctcttttcaagtcaagcatcgcactaacttatctgcctcgtcagaatgatggattacagaaacaggctagtcttggctccaatggtccgagtgggtacattgccgtttaggctgcttgctgcccaatatggagctgacataacctatggagaggagattattgatcataagatcatcaaatgtgagcggcgagttaatgaacgtgccccgaggagagaaatcgagttgtatttcagatgggcacttctgatgccatgagggctctcaaagctgctgaaatagtgtgtaaagatgtagcagcagtggacgtaaacatgggatgccccaagtcattctctattactggaggcatgggtgctgcactgttgagcaaaccagagctcatccatgatattttgacaacattgcgaaggaacttggatgtaccaataacatgcaaaattaggttattaaaagatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32400" stop="27343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32100" g_stop="32017" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32016" i_stop="31171" i_length="846">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31170" g_stop="31093" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="161" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31092" i_stop="30906" i_length="187">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30905" g_stop="30800" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="267" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30799" i_stop="29667" i_length="1133">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29666" g_stop="29583" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="351" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29582" i_stop="27922" i_length="1661">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27921" g_stop="27813" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="460" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27812" i_stop="27711" i_length="102">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.186" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27710" g_stop="27643" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="528" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-U338317" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32100" e_stop="32017"/>
          <exon e_start="31170" e_stop="31093"/>
          <exon e_start="30905" e_stop="30800"/>
          <exon e_start="29666" e_stop="29583"/>
          <exon e_start="27921" e_stop="27813"/>
          <exon e_start="27710" e_stop="27643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCGTCAATTGCAACCACTCCGATACTCCGCCGTGGTTGGTCGCCGCCGGCTGGGAAAATTCTTCCTCTCTTTTCAAGTCAAGGTCAGTAACAACTGTTGACCTGCTCTTTCTCTTTACTGGTCAATGTTTATATTTAGAGACGAGAGACTCATCAGTATTATTTTTTTAAACTTTACTGAGCAAATACTGTAAGATCCGAAGCTATATATGTAAATTGTATCGTTGAAGTCTAATTGTCCCTCGGAATTTGCAATTGCTGAAACGTAGGTTGGCTTTGAGTGAGAGCATCAGGATTTTATTTGACAGCTGATGTTTTGATTGAATAAATTTCTGTTCTTAATTGTCCATATAACGTAAGATCCAAATCTGTATATACATTGTGTTTCTTAAATGCTAGCCATGGTCAGGAATTATGTACAATTTGTTACTTGCTCAGTCTATTTTTACTTGTCCATGAAACAAAGTCAATAATTTGGAAAATAAGTATAGATAATAATAAGGGTAAAATTATTTGGGATGACCTAGTGATTTGAGCTTGGGACTTCCACGTTGGATATCTCAAGTTTGTAACCCCTTGCCAATAAAAATAAGAGGTTTGCCTTTTGGGTTGAGCTCATTACCCGGGGCTTGCCTAATGCGGATTACCTATCGTGTGTAGTTTGGGAGCTGTGGTGTGCACCCAAAGGTAGCGGCTACAGTTTCCCTTGTCATATAAGAAAGAAAAAAAAAGTAATAAGGGTAAAATGGTAAATTATCTTTTAATTTTCTTAACTGGACTAGTAAAATTGGACATCTTTTTTAAGTGTAGTGGACAATAAAAATGGATGGAGAGAATAATTTATAAGCATAACAGCTATTCGTAACCTGTAACTCTTTGTACAGTATACTGACTATACTCAATTTGGTCAATGTATACTATTGTCTCAGGCATCGCACTAACTTATCTGCCTCGTCAGAATGATGGATTACAGAAACAAGCTAGTCTTGGCTCCAATGGTCCGAGTGGTAAGTACCTTCAAGTGAATTTAAATTAGAGCAGTCCTGTTTTGGTACTTCATGTTCCCATTTCTAGATGTGTGTGGCTCTTTTTAAATTCACCAGGAAGCATAGTTAAAACTGCTCTTAATGTGTTTTTTACTTTACTAAATGATGCTTTAAATGCCCATGTGTATTCTTCATTGCTTTTGGCCAGGGTACATTGCCGTTTAGGCTGCTTGCTGCCCAATATGGAGCTGACATAACCTATGGAGAGGAGATTATTGATCATAAGATCATCAAATGTGAGCGGCGAGTTAATGGTAATTTCTTGTTCATCCTTTTGCATCCTTCGTCTGGATTATCCTTGAACATTTTTCATGTAACATGTAAACTAAATACATACTACCTCTATTGAAAGAATGAAACGAACAGTTCCTAAAAATGCCAAGGCACCAATTACGTGACCACTATTGTTCTTATTCAAGACCCTTTCTTTGATGAATATAACCTTGGTTTGAATGTGATGTATATGTCAATTTGAGTACTTCTATATTTCTAATGGATTATCAGATCTTATGCTTTTATGTTAATGAAAGAAGGATGTGAACTCTTAATTTCATCATGTTATGGCTCTCTAGTCTCTATCAAGAAAATGAGCCTTTTATTTGAAGAAATTTGATAACGAGAAGTTTTACATGGATCTGTGGCTTAAATGGAATATTTGAGAGATGATTGAGCATTTACTGATGATAGTTAATATCGGAACGTTAAAACCTTGAACTGAATATTTTAGTGTGAGTTGATTGCCCCTCGAATACCAAACAAGGATTTGTAAATTATTATATAGGTCGTGTACAGTGGTGGAGCCACCTTGTTCTCACGGGGTTCATCCGAACCCCCTTCACCGGAAAATTAGTACTATTTATATATGGTTAAAATTATTTTTTAGGTATACATAGTAAATGTCGAACCCCCTCGACTATTTCGTTTGTCTATTTCTTCAGATTTTGAACCCCCTTATTGAAAAAATCTTCATGTATATTGACATAGTATAGATGACATCTGATACCTGATTCAGTAGCTTTCCAAGCGGAGAAGATTTATTCAAAGTCATTACTCTGTAAAGGCTTTATGACTTGCTGTATATGTTGTTGACTTTGCAGTTAGCATTATGCTTTATGCCTTGCATTTTACTTCATATTTTTATTTTTAGGTATTATGAGCATAGATGAATAGGATTCACAGTCACTTATGAAAAAGAAACGAAAAGATAAATATCATAGTGAAGCCTGCCTTTAGATGCAGGTTACCTAGTACATTTGAGATGGCAAAAGAAAAAAGTTGCTAAACTCGATGCTTCTAAAATATTTCTCATGAGTTTTACCCCTTATTCCTTAGATGTCTTAGGGACTACTGACATAGTGGAGAAGGGAACTGATAATGTTGTTTTCAGAACGTGCCCCGAGGAGAGAAATCGAGTTGTATTTCAGATGGGCACTTCTGATGCCATGAGGGCTCTCAAAGCTGCTGAAATAGTGTATGTTCCATTCAGTTCTTTCTTTTTTCCTCCCTTATCATAACTAATTTTCGTACTTTAAATCCATCTGCTCTCCTCCCCCCCCCCCTCCCCCCCCCTCACGCACACACAATCTGTTTTTCACATGGTCATACACAGAGTCTTATAGACAGACAGATTGGATTGGATTCCTATGATGAAATCTCGCTCTTGTTTCCACTTGTTTTATTTTCAATATGCGTCTTCTAGCATTTTTGGTGGTATTTCTTTTTAAGTAATGTGATGCATTATGTAGTATATCTCTGTTGGTTATGTAAGAACTCGTATGGTTGAGTTTATGAACAGACAAGCAGTTTCTCTAGCGAAACCAGATACCCTCACCTCCATCCACACCCAAAAAAGGCAAAAAAGACAAACATTCATTTTGAGCAAATACAAATGCCATTAATTAATAACTCCTTTCTGCCGGTTTGGGGTTCCTAATAGGTTGTGTCATTCTCTTGCTGAGTATAGTGGCACCTGCATAAGTCTTCTTGTGCCATGAAACGTTTTCTTGATAACAACAGATATTATTGGGGGGTTTTACAAGGGGTGAGGTAGAGTATGTATGTCCTAATTTCCATACTGAACATCAAGGTTAGAAGTGGTCTTGTTGGATTTAAGAGGTAGATTTCATATATTCCAGTTCTCTATATTATACATCAATGTTAGAAATGTTCTTGTTGGAATTCTTTACTAATTTGCTTGAGGAACTGTCCTTTTTCTTTGATGAAGTAATGTGTTTTGTTAAGGAGCATCTAGAAGATGCAACTTACTAAAGAAATCTGCTAGCAATTACTAGTAAAGTGAAGTTGCAATTCCTTATACAAAGTGCTACCCTAAGCGTAGGGAGCTTACAATCTGAAAAAATGGTCGGGGCTAGTTACAGACTCATAGGTGTCAATTTAATCAGGCAAAACAGACTTAGCAGTCACTTTGCTTTGAGGGAAGAGTTTTGAGTTGAAATACCATCAAAGCATCTACTGTTTCTTTCAATCCACAGACACCAAAAAATTTATTCCAGGAATCATTACCCGGATCTTCTTGATGGCCTTGTCAACTCTCAAGTGGCAGTGTGGCACCAGCTTGAATAAGCTTCCTTCACATGCACAACATCACCCATTTCAGCCCAAGGAGGAAAAATAGAAATTATTGAGGAACTGTTTTTGAAGCTGGACTCTCTGCTTTTGCTTTTCATTTTGTCAAATGATGTCATCGTTTTCTGCATTGGAAGTCTAGATTTTTAAGTTTTTCATGTTGTTAGCAGTATTTAGAATCGACTTTTCTGACATTAATTGGATGATGGATATAGCTGATGTTCGTTTATAAATAACAGGCTTGTCAGAGTTAAATTTATTAATGTTGAACTGCAACAAGCTGCAGTGATATGAATTCGCTTCTCCAACAATTTTCTCTATATTGAATAGCTATCATAATATTCTGTGAATTGCATTCTTATCATGATTCTTAATATACTTTCTTAAGATAGTGAAGAAACTTCAAAGCACATGCTTGAGTTTCTTTGCTCTTTTTAGGTCTTTACTTCTGACTTGGTCATGAAAGCTTAAACCAGCAATTATGCTCGATATGGGTAGGAAGTTAGTGCATCTGATCGAATTATTTGATGGTCTGTCCCTTTTCAGGTGTAAGGATGTAGCAGCAGTTGACGTAAACATGGGATGCCCCAAGTCATTCTCTATTAGTGGAGGCATGGGTGCTGCACTGTTGAGCAAACCAGAGCTCATCCATGATGTATGCAATTACTGTTGCTCCTTCATCAGTATCCGAGTTTCCTTCTAATATAGCATAGGAGTGCATGTCCTGTTCATAATGCTTCCCTTCTTCTGAACTCAGATTTTGACAACATTGCGAAGGAACTTGGATGTACCAATAACATGCAAAATTAGGTTATTAAAAGATCC</genome_strand>
        <mrna_strand>GCTCGTCAATTGCAACCACTCCGATACTCCGTCGTGGTTGGTCGCCGCCGGCTGGGAAAATTCTTCCTCTCTTTTCAAGTCAA-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGCACTAACTTATCTGCCTCGTCAGAATGATGGATTACAGAAACAGGCTAGTCTTGGCTCCAATGGTCCGAGTG...........................................................................................................................................................................................GGTACATTGCCGTTTAGGCTGCTTGCTGCCCAATATGGAGCTGACATAACCTATGGAGAGGAGATTATTGATCATAAGATCATCAAATGTGAGCGGCGAGTTAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTGCCCCGAGGAGAGAAATCGAGTTGTATTTCAGATGGGCACTTCTGATGCCATGAGGGCTCTCAAAGCTGCTGAAATAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAAGATGTAGCAGCAGTGGACGTAAACATGGGATGCCCCAAGTCATTCTCTATTACTGGAGGCATGGGTGCTGCACTGTTGAGCAAACCAGAGCTCATCCATGAT......................................................................................................ATTTTGACAACATTGCGAAGGAACTTGGATGTACCAATAACATGCAAAATTAGGTTATTAAAAGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327900" ref_strand="+" ref_description="SGN-U327900        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | far-red impaired responsive family protein / FAR1 family protein, weak similarity to far-red impaired response protein (Arabidopsis thaliana) GI:5764395; contains Pfam profile PF03101: FAR1 family | chr3:21989938-21991521 REVERSE | Aliases: T16L24.20(evalue: 6e-73, score=270) genbank/nr: gi|6996283|emb|CAB75444.1| putative protein [Arabidopsis thaliana] (evalue: 5e-71, score=270)">
      <seq>tgaaaatgtgattggaggaagttccagtgaggaggcacttcaccaggtgcatgatgtcaaggtggatgaagaccttcctgaaagggaggaccttatattagaagaagcacaatctctcgataattcaacttcagatgaacctttcgttggcctggagtttgaatctgaagccgcagcacatgcattttataatgcatatgcaacaagggtgggttttatcatccgggttagtaagctttcgcgatctaggcgtgatggctccgccattggtcgagcactagtttgcaacaaggagggttttagaatgcctgataagcgggaaaagattgtgcgacagagagcagaaacaagggttggttgcagagcaatgatattagttagaaaaataagctctgggaaatgggttgtcacaaaatttgtcaaggagcactctcatccattgtgcccaggcaaaggtcgcagggacttgatctatgatcaatacccgaacgagcatgacaaaatccgggaactatctcaacaactggcagctgagaaaaagcgatctgctacatataagaggcatttggaaatgattttcgagcacattgaggagcacaatcaatctctgtttaagaagatccaagatattgtacacaatgttagggagttggagtccaaagatgaacatcatcatagatagttttagcttaatatgcctttgttgatattagtgtagaacctaagttcagtaaagatcataatgattactgtcttgacttgcctttttttccctctccctgttatccttttcattttttttgggaagggtatgaaaaatttaaaacccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37721" stop="40986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38021" g_stop="38507" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38508" i_stop="40337" i_length="1830">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40338" g_stop="40678" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="828" r_length="341" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="830" polyA_stop="863"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-U327900" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38021" e_stop="38507"/>
          <exon e_start="40338" e_stop="40678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATGTGATTGGAGGAAGTTCCAGTGAGGAGGCACTTCACCAGGTGCATGATGTCAAGGTGGATGAAGACCTTCCTGAAAGGGAGGACCTTATATTAGAAGAAGCACAATCTCTCGATAATTCAACTTCAGATGAACCTTTCGTTGGCCTGGAGTTTGAATCTGAAGCCGCAGCACATGCATTTTATAATGCATATGCAACAAGGGTGGGTTTTATCATCCGGGTTAGTAAGCTTTCGCGATCTAGGCGTGATGGCTCCGCCATTGGTCGAGCACTAGTTTGCAACAAGGAGGGTTTTAGAATGCCTGATAAGCGGGAAAAGATTGTGCGACAGAGAGCAGAAACAAGGGTTGGTTGCAGAGCAATGATATTAGTTAGAAAAATAAGCTCTGGGAAATGGGTTGTCACAAAATTTGTCAAGGAGCACTCTCATCCATTGTGCCCAGGCAAAGGTCGCAGGGACTTGATCTATGATCAATACCCGGTTAGTTTTCTGCCTTATCTTTATTAAGGTCTTGTAACATAAGGTATCCTACTTTCTTTTTGTACATACATGTCATTTAATTTTCTAGACTATATCATCCTATTATTGCCTTTTGCCTTTGATTAAACGTCTTTTGTTTGTACCATTTGATGGAATCTGAAATTTTAAAGGAGGCAACAACATGTATGTTATAACTTATATGTACTAGTTTCTGGATACCGGCTTTGCATGTGTACCTCATTTAATTAGTACATGATTTTTAAAACTCACATAAATCTTAATAATCAATGTGTTTTAGTTATCAAATAAAATTTATAGAGAAATGGAAGTTTATGAAAATGATGAATATTGAACTCATTTAGCTAGCTCAATAAAGGAAGAAATCTTGTGCCACGGAGGTCCTCAAATGCCTTATTGCAAAATAGAGACACATATGGGAGCAAAGTTTCTTCTAAACTGAAATCTTAGTTTATCCCAAAACCTAATTAGAGAACATGTTTAGGACTACCAAATGCCGAATATAAATATTATGAAAATTGTAGTTAATAATGCTATTGTCGAGTTACTTATTTTGCTATTAAAAGACAAAAAGCAAGGCATGTTGGCAAATGTTTTTAAGTCATTGCCGCTTAATAAATTTTATTTCTATAACTTAAATTTAAAAGCCAAATGACGATATGAAACAGAGTGAACATGGCTGCTTCTCACTGAAATCACTTAAATTTATAAGTGAATGATTTCATGGATATATCAAGTGGGTGTCAACATTATATTCCACCTTCTTACTTTTTCCCTCACAAAGGCAACACCAGCTAAACATCATCCTTCTCAAACTTTCTACTGTTAGTATGCTGTGGCAAAATGGTATAAAGGATAGTTCCATTTTGGTATGAGGAACTTATGGTTATGAGAACAAAATGTTGTAGTAACCAAAAAAGGAACAACAGAATTTATATCTTACCTCTATAAGTGCAACCTCTATTTTGCTGGGGGGAGAGGCGTGTGTGCAAATATTTGCCCATTTTGCTTTCTTTTATAGCACCATTATCCTGCTGTTCTCTCAGAGCTACCATTTAAGGTGGAGTGCTAATTGAATTTTAAGAGAAATTCGACAAGAGAAAAATCATTACGAAGGAAAAGGGAGAAATTCGGCAAGATATATCCTTCTATGTTGTTTGGACTCACTATTCCTTGATTGCAAATACTAATAAATGGTAGTCCATCTTTCCATTTTGGGAGTTCTGTAAAAGTGATGGCGTGTTACTTATACAAATTTATTCAGTTAGCACTCTGTTATGTGGATAAAAGATGATATAAAGTGTTTTCATTTGTGTCTTTGGACAGGTTATATATTCGTGAGTCACCTTACCCTTCAATTTCCGTCATCATTCATATTGATATTACATGAACCTAGAAATGTAATCCTTTTTGGCTTCTTTGGTGTGCGAGAAGAAGTGTTTATAGAAGTCATGACCGTTGTGCTTTTGGTTGTAATATGCACTTAAAATACTGATCAAGTCGAAGTATCAAATTCAAATTTGAAAACGTTAACTCTAAATACTACAAATAGTTGGAGATGGTAAATCTGTCATAAAAGTACATATTATTGTCATCGCGAGGACATTTAAACTAGAAACTAGATCATATAAACTGGAGTGGGGGAAATTAGTCGATTTAACAATTGCCACTTGTAGCAGTAGTTTTAAAATTACTGATTTTCTCTGTCAATGCATCTAAAACTGAGTATCTTATGCCTAGTTCATCTTCAAAGAACTAACTTTACCCGATTTCAGCTAACACTTGTTTTGGTTTCTCAACTTCTTCCTGCAGAACGAGCATGACAAAATCCGGGAACTATCTCAACAACTGGCAGCTGAGAAAAAGCGATCTGCTACATATAAGAGGCATTTGGAAATGATTTTCGAGCACATTGAGGAGCACAATCAATCTCTGTCTAAGAAGATCCAAGATATTGTACACAATGTTAGGGAGTTGGAGTCCAGAGATGAACATCATCATAGATAGTTTTAGCTTAATATGCCTTTGTTGATATTAGTGTAGAACCTAAGTTCAGTAAAGATCATAATGATTACTGTCTTGACTTGCCTTTTTTTCCCTCTCCCTGTTATCCTTTTCATTTTCTTTGGGAAGAGTATGAAAAATTTAAAACC</genome_strand>
        <mrna_strand>TGAAAATGTGATTGGAGGAAGTTCCAGTGAGGAGGCACTTCACCAGGTGCATGATGTCAAGGTGGATGAAGACCTTCCTGAAAGGGAGGACCTTATATTAGAAGAAGCACAATCTCTCGATAATTCAACTTCAGATGAACCTTTCGTTGGCCTGGAGTTTGAATCTGAAGCCGCAGCACATGCATTTTATAATGCATATGCAACAAGGGTGGGTTTTATCATCCGGGTTAGTAAGCTTTCGCGATCTAGGCGTGATGGCTCCGCCATTGGTCGAGCACTAGTTTGCAACAAGGAGGGTTTTAGAATGCCTGATAAGCGGGAAAAGATTGTGCGACAGAGAGCAGAAACAAGGGTTGGTTGCAGAGCAATGATATTAGTTAGAAAAATAAGCTCTGGGAAATGGGTTGTCACAAAATTTGTCAAGGAGCACTCTCATCCATTGTGCCCAGGCAAAGGTCGCAGGGACTTGATCTATGATCAATACCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAGCATGACAAAATCCGGGAACTATCTCAACAACTGGCAGCTGAGAAAAAGCGATCTGCTACATATAAGAGGCATTTGGAAATGATTTTCGAGCACATTGAGGAGCACAATCAATCTCTGTTTAAGAAGATCCAAGATATTGTACACAATGTTAGGGAGTTGGAGTCCAAAGATGAACATCATCATAGATAGTTTTAGCTTAATATGCCTTTGTTGATATTAGTGTAGAACCTAAGTTCAGTAAAGATCATAATGATTACTGTCTTGACTTGCCTTTTTTTCCCTCTCCCTGTTATCCTTTTCATTTTTTTTGGGAAGGGTATGAAAAATTTAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313843" ref_strand="+" ref_description="SGN-U313843        Tomato 200607 #1 [54 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (B-box type) family protein / salt-tolerance protein (STO), identical to SP:Q96288 Salt-tolerance protein (Arabidopsis thaliana); contains Pfam profile PF00643: B-box zinc finger | chr1:1828412-1829889 REVERSE | Aliases: T21E18.9, T21E18_9(evalue: 2e-65, score=246) genbank/nr: CONSTANS(evalue: 3e-116, score=421)">
      <seq>tcttccactcatttcattgtctatattcttcttcttttctactttctcctcccatttttcccattacaaacactacatttttctgtttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgcaaggactgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttagccactggaatccgtgtagccttgagctcaagctgtaataaggaatcagtaaaaaaccaactgcagccacaaccacctcagcagaattcccaacaagttggcttgaaaatgcctccacagcagttgtcctgtataacatcaccatcttggcctgtcgatgatttactaggatttccagattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaagatactccttatcttgcttactttcgcagtgcgctcatattgtcaacagacatgttcagtaagtagaggaaacactattctgcttaagatatcctttatcttgcttaaaaaaaaaaaaaaaaaaagaattgcatcaattttttcttcttatagcaattttataaacatattgatgcattcttggacatgctatgcatattgctacatagtaaaatctggtttgtaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48456" stop="52340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48756" g_stop="49277" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50788" g_stop="51096" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="831" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51477" g_stop="52030" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="832" r_stop="1385" r_length="554" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1387" polyA_stop="1409"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-U313843" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>1385</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48756" e_stop="49277"/>
          <exon e_start="50788" e_stop="51096"/>
          <exon e_start="51477" e_stop="52030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCACTCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATTAGATTATTAATAATACCATTTCACATATAGTTAATTTTGTATTTCTATGTTTAGTATTAATCACTCTGTTTCTTTTAATTCGTGTGTCTTGTTACCTTTTTAGCTCCTGATCTTCAATTCCAACATGTGACATCTTTTAAGGTCATAGTATTTAAAGGGTGTAATGTTGCCCTCAAGTTTAAGACCACTCAAGTCTCTGGCCACTTAATTAAATTTCTTGATCTGTCAACCCGAAACGCAAAATGAAAGCAGAGGGAGCAAAGGCAGATCTAGGATTTGAATCGTAGAAAAAGGTTGCACCACAAAAACAATGTGTTAAGTGGAAAATTGATCCCGAGTTCTCTATTCGAATAACTTAGCATTCAACCAATCAAGTGCACCATTAGCTTTACAAAATACATACCTAAAATATCTAGTTTCACAGAGAGACCATGATTTACAAGCCCCAAAATTAGCATATAAATTTGCCACTGAGAGGCAGTATAGTATGATAACAAAGTTCTTGCTTTTCTAGCTAAAGATATAGGGGAGAGGGAGGAATGGAGGCTTACCAGACTGCGCATCTTAAACCTCATGTCATAACCACTAAGTATCTCAAACAAGAAAGAAGTTATAGGTGTAGATAGGGCATAGTGAAAATGATTTCATGGATATGGGATAGTTTCAGAGGGCTTTGGTTCAACATCAAAGGTAGTAAGTACAACATTGAATGTATGGTAGGCGCACGTCACAAGTTTTACCTTGATGGGAAACTAAGCCTAGTGTTGTAGTGGAGAAAAGTAGATGTGTGGACTTGTTAACCACCGAATTTCAGAGTTGGAATCAATACTTTTGTGATGGTATCAACCCTTTTGAAGACCCGAAAACTCAAAGATATTTCATGTCTATATTATTGCACATAGAATTTTTACCTTATATTTGAATTGGAATATGCATATGTAAGTCAATTGATAATTAAAAGTGATTTTTCTGAACATGGTTATATCTGTCAAAATGATGTAAACATACCCGAGAAAAAAGATTGGAAGTTAAAGATCAATGTCTTTTCCAGAAATTCTCTGACCATCTTTGCGAGACTTTTATATTTGCTTGCATTTAACTTGAACTGTTATGTATGCAGGATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTACATTTCGCCTCCTTGGTAGAATTGCATCAATTTCTTCTTCTTATAGCAATTTTATAAACATATTGATGCATTCTTGGACATGCTATGCATATTGCTACATAGTAAAATCTGGTTTT</genome_strand>
        <mrna_strand>TCTTCCACTCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTAAAAAAAAAAAAAAAAAAAGAATTGCATCAATTTTTTCTTCTTATAGCAATTTTATAAACATATTGATGCATTCTTGGACATGCTATGCATATTGCTACATAGTAAAATCTGGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334622" ref_strand="+" ref_description="SGN-U334622        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (B-box type) family protein / salt-tolerance protein (STO), identical to SP:Q96288 Salt-tolerance protein (Arabidopsis thaliana); contains Pfam profile PF00643: B-box zinc finger | chr1:1828412-1829889 REVERSE | Aliases: None(evalue: 2e-26, score=117) genbank/nr: gi|76160970|gb|ABA40448.1| fructokinase 2-like protein [Solanum tuberosum] (evalue: 3e-30, score=135)">
      <seq>ctactttctcctcccatttttcccattacaaacactacatttttctgtttttgattgaaagttttcatttttagtattttggactaaatcacctgctttgggttttcttgatttttgcagggtttttcttttttgtctgactgacccttttgggggtattttcgaatcttgaaaagttctgagttctcttcataaaaagcttcaagacactattttttcaatttttcttgtgtgaaactcaaatgggtatgtcttgaattagtgttaggaggcaaagagttaagtaataaaagataaaaagatgaagatacagtgtgatgtgtgtgagaaagctcaagctactgtgatttgctgtgctgatgaggctgctctgtgtgcaaaatgtgatattgaagttcatgctgctaataaattagcaagcaagcaccaaaggcttcatcttcagtgcctatctaacaagcttcctccttgtgatatttgccaagtaagggaacttcttctttttgttgccctgttcatggaataatttgtttttagtctagattgtgttactaatatttcaatgtggtagttgtgttgctccttgattaatggaaagttaacttgtgtaccctcccactggtttgggctttggactttcaacatggaagtctgaagtgccttctgggtcaatctcagtgcaccggacttgcctagtgctaattacatcttccatgtggtttgcaagctattatataggaacggggtttgcaagctgttaaataagagcggggttagcccctatgcgcactcaagggcagcggctgcgggtttccttgtcataaaaaaagttggaaagttaacttgtgatgttccttttgattaaactctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48494" stop="49967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48794" g_stop="49667" g_length="874"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="874" r_length="874" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-U334622" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48794" e_stop="49667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATT</genome_strand>
        <mrna_strand>CTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAAACTCTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334620" ref_strand="+" ref_description="SGN-U334620        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (B-box type) family protein / salt-tolerance protein (STO), identical to SP:Q96288 Salt-tolerance protein (Arabidopsis thaliana); contains Pfam profile PF00643: B-box zinc finger | chr1:1828412-1829889 REVERSE | Aliases: None(evalue: 3e-22, score=95.9) genbank/nr: CONSTANS(evalue: 2e-71, score=170)">
      <seq>ggaatcagtaaaaaaccaactgcagccacaaccacctccttgtgatatttgccaagataaagcagccttcatcttctgtgttgaggatagagctctcttttgcaaggactgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttagccactggaatccgtgtagccttgagctcaagctgtaataaggaatcagttgtcctgtataacatcaccatcttggcctgtcgatgatttactaggatttccagattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaagatactccttatcttgcttactttcgcagtgcgctcatattgtcaacagacatgttcagtaagtagaggaaacactattctgcttaagatatcctttatcttgcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50474" stop="52216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50788" g_stop="50944" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="212" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50945" i_stop="51018" i_length="74">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51019" g_stop="51096" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="290" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51477" g_stop="51915" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="729" r_length="439" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="730" polyA_stop="740"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-U334620" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50788" e_stop="50944"/>
          <exon e_start="51019" e_stop="51096"/>
          <exon e_start="51477" e_stop="51915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTAC</genome_strand>
        <mrna_strand>GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAAT..........................................................................CAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313842" ref_strand="+" ref_description="SGN-U313842        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (B-box type) family protein / salt-tolerance protein (STO), identical to SP:Q96288 Salt-tolerance protein (Arabidopsis thaliana); contains Pfam profile PF00643: B-box zinc finger | chr1:1828412-1829889 REVERSE | Aliases: T21E18.9, T21E18_9(evalue: 3e-18, score=88.2) genbank/nr: CONSTANS(evalue: 7e-56, score=218)">
      <seq>ctgtgacgaagcaattcattcagccagcagcctcgctaagaaccaccaacgcttcttagccactggaatccgtgtagccttgaaaatgcctccacagcagttgtcctgtataacatcaccatcttggcctgtcgatgatttactaggatttccagattatgagtcgagtgacaagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaagataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50541" stop="52111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50841" g_stop="50913" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50914" i_stop="50994" i_length="81">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50995" g_stop="51096" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="175" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51477" g_stop="51808" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="507" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="528"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-U313842" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50841" e_stop="50913"/>
          <exon e_start="50995" e_stop="51096"/>
          <exon e_start="51477" e_stop="51808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAGGTAATACAAACTTATTCCTTTCATTTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAG</genome_strand>
        <mrna_strand>CTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGT.................................................................................GTAGCCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG............................................................................................................................................................................................................................................................................................................................................................................................AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334623" ref_strand="-" ref_description="SGN-U334623        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (B-box type) family protein / salt-tolerance protein (STO), identical to SP:Q96288 Salt-tolerance protein (Arabidopsis thaliana); contains Pfam profile PF00643: B-box zinc finger | chr1:1828412-1829889 REVERSE | Aliases: T21E18.9, T21E18_9(evalue: 3e-05, score=45.8) genbank/nr: CONSTANS(evalue: 2e-24, score=115)">
      <seq>tttgcaagtatcctatattttctaccacttgggttggtggctggcggattgacgtatagaggacttctctagatgagaagctatcgattttcttggtaatgcagcttatgcatagcattgaacttgaatttgaaacactcaaatatgcaaaacgacttccttagattcctcgatacatagggagacattttatgacaccattacatgtatatacgaagttggccttgggtatattccggtgtcagtttaatatgtgaaactgtggtgaccattgattcagtatattacggtgtcattgtctgttcatttaatatgtaatgaataacctatatattggttgtttcaatttaatacagaaggatctacttgagcttggtgaatttgagtggttagggggcattgatctctttggtgaacaaacagcagctgaagtgcccgagctatcagtacctcagtcgagcaatacaaatatttacaggacaaccaaatatcaaatgccttacaagaagtccagaattgaaatcccagatgatgatgagtattttactgtccccgatcttggttgaactccaacttcaagaagtttccaattaaatgtgcatgtgtgcttgtgtgtagtacttaatcagtgctctcatactgtcaacagatatgttcagtaagtagaaaaagtattgttctgcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50821" stop="52111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51121" g_stop="51808" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="689" polyA_stop="703"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-U334623" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334623" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51121" e_stop="51808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAG</genome_strand>
        <mrna_strand>TTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTTTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATTTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATTTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313491" ref_strand="+" ref_description="SGN-U313491        Tomato 200607 #1 [84 ESTs aligned] arabidopsis/peptide: | Symbol: None | pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinase | chr3:21993998-21995572 FORWARD | Aliases: T16L24.30(evalue: 1e-153, score=540) genbank/nr: gi|1915974|gb|AAB51108.1| fructokinase [Lycopersicon esculentum] gi|2102693|gb|AAB57734.1| fructokinase(evalue: 0, score=645)">
      <seq>ttctatataaagctccttataattttcacttatcctcctcttcttctctctgttatactatataaaaatctatagatacacctatagatacatatattttctctattcatcgtagccatggcagttaacggtgcttcttcttctggtttgatcgtcagtttcggtgagatgttgatcgatttcgttccgacagtctccggcgtatcccttgccgaggctcccggatttttgaaagctcccggcggtgcaccggcgaacgtcgctatcgcggtgacgaggctcggagggaagtcggcgttcgtcgggaaactcggcgacgatgagttcggtcacatgctcgccgggattctgaaaacgaacggcgtacaagccgaaggaattaattttgacaagggcgccaggacggctttggcgttcgtgacgctacgcgccgacggagagcgtgagtttatgttttacagaaatcccagtgccgatatgttgctcacgcccgctgagttgaatcttgatcttattagatctgctaaggtgttccactatggatcaattagtttgatcgtggagccatgtagagcagcacatatgaaggcaatggaagtagcaaaggaggcaggggcattgctctcttatgacccaaaccttcgtttgccgttgtggccttcagcagaagaggccaagaagcaaatcaagagcatatgggactctgctgatgtgatcaaggtcagcgatgtggagctcgaattcctcactggaagcaacaagattgatgatgaatccgccatgtccttgtggcatcctaacttgaagctactcttggtcactcttggtgaaaagggttgcaattactacaccaagaaattccatggaaccgttggaggattccatgtgaagactgttgacaccactggagctggtgattcttttgttggtgcccttctaaccaagattgttgatgatcaaaccattctcgaggatgaagcaaggttgaaggaagtacttaggttttcatgtgcatgtggagccatcactacaaccaagaaaggagcaatcccagctttgcctactgcatctgaagccctcactttgctcaagggaggagcatagaaacatcgtgttatcttttttcttttttccatcttcatatatttccccccctttatgagtttttttgaagctagtaggaagccttttcagttttggattttaatgttttgttgtgatgaatgtccatcaagacacttaataaactaagctttcttcaaaaaaaaaaaaaaaaaaacttctcctttacatcatcatactagtatttcattatccaattctatattctagtagacatagttttcacctatttcatttgtcatcaaatcctagtaaagttgggaattttgcccaagagttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="-" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55285" stop="51969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54985" g_stop="54464" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53536" g_stop="53204" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="855" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52900" g_stop="52784" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="856" r_stop="972" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52699" g_stop="52274" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="973" r_stop="1398" r_length="426" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1402" polyA_stop="1417"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="-" ref_id="SGN-U313491" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1398</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54985" e_stop="54464"/>
          <exon e_start="53536" e_stop="53204"/>
          <exon e_start="52900" e_stop="52784"/>
          <exon e_start="52699" e_stop="52274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATATAAAGCTCCTTATAATTTTCACTTATCCTCCTCTTCTTCTCTCTGTTATACTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCTGTAAGTTATTTAATCTGTTTTTTTCTTCCCAACTCGCATTGGATTTGATGATCTGTGCGTGTTTCTCACGTGCAATTTCGTAGTTTTGTGATCACGAAGAAGCTGGTGAGTTTGTTGTTGTTTGTTTTTGACTCAACTGTAGTAATTAATTAATAAATTGAAAAAGACGTAAAACTTATTTTTATTTTTAGGTGGGTTGGTTTGGTGTCTTTTTTTTTTTCGACTTTACTGTCATTTTTCTAATTAACAACGTATCATTTTTTTGGATCCGATCCGGAATCGCTTAGTATGCCCACACATCCATTTCAATAGCGATTTCGCTTTTGTAAGTAAAAGGTGATCCCTATCCACTTTTTTAAAATTTTGTTTGTTTAAAGAGAGACAGCTAGAATTTTGTCACTTAGGATTTTAGTTAGAGATAAAATTAGGAATTATTGTGTTGCATGCAATTAAGATGAAGGTGTAAGTGACACGGATTTTTCTTGAAGAGTGGGTGAGTGTTGTCTGTTAGCTTAACACAACTTTTCCTGCCTTTCATGTGTTGAAATCTCAAAAACCTATGCTTTGTCTCTTTCTCTTTTGTTCCCACTTGCCTCTTATATTGTAGATTTTTAGTTCACATGATATTTGCTACAAAACCAAATTGATTTGTTTGCATTCAAATGGGTAGTTTATGTGTTTATTTTTTCATATTTTGAATCAAGCGAAAATTCTAGCTTCACGGAAAAAAGTGTATAATGACGATACATACTAGGAGGAATAGTATAGAGTGTATCGAAATCGAGTGGAGCCAAAAGGGGTAGGTGGGGAAGTATAGTTAAATTCATGTCAGGTGTCATTATCATGGAGTCAGTCATTAATTGTAGCTCACAAACTAATTAATTTTTGTATGGATTATAGTTTAATTTGTGAATTTTGTGTATATAGGCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAGGTATATTCTATCTTTTGGTATTTCGTTTTTTAAATAATTTTTATACTCGTAATCGTTCCTATTTTATTTAATTGCTTATTATTGAATTCTCTAGTAGATAGCTGTAAAGTGGTAGGTAAGAACAACTTAGACGAACCATTGTTGTTTAATTTGTAATTAAAGTAAGCCAAGGAGGACCTACAACACTAAATTAGTGTGTCCCCTCATGCCTAATAAAGGCGTTTATTTTTTAAATTAGAATAGAGAATATTGTGTAATTGGTTTTGATAATTTGATCTGACTTAGTTCTTTTTTGGGGTGTAGAAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAGGTAAAATAATTACCTTTTCTTAGAACTAATTTAAGCGATAACGTGTCGTATAATATACTAATTTGTGTGGAAAAAAAAATGCAGGATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCATATGCAGCTTCCTTGTAACTTCTCCTTTACATCATCATACTAGTATTTCATTATCCAATTCTATATTCTAGTAGACATAGTTTTCACCTATTTCATTTGTCATCAAATCCTAGTAAAGTTGGGAATTTTGCCCAAGA</genome_strand>
        <mrna_strand>TTCTATATAAAGCTCCTTATAATTTTCACTTATCCTCCTCTTCTTCTCTCTGTTATACTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG...............................................................................................................................................................................................................................................................................................................AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG....................................................................................GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCAAAAAAAAAAAAAAAAAAACTTCTCCTTTACATCATCATACTAGTATTTCATTATCCAATTCTATATTCTAGTAGACATAGTTTTCACCTATTTCATTTGTCATCAAATCCTAGTAAAGTTGGGAATTTTGCCCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327524" ref_strand="+" ref_description="SGN-U327524        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | BURP domain-containing protein / polygalacturonase, putative, similar to polygalacturonase isoenzyme 1 beta subunit (Lycopersicon esculentum) GI:170480; contains Pfam profile PF03181: BURP domain | chr1:26516385-26518851 REVERSE | Aliases: F17O7.9, F17O7_9(evalue: 5e-35, score=145) genbank/nr: gi|15223133|ref|NP_177194.1| aromatic rich glyco protein -related [Arabidopsis thaliana] gi|7488153|pir||T01485 probable polygalacturonase (EC 3.2.1.15) 1 beta chain F17O7.9 - Arabidopsis thaliana gi|3176680|gb|AAC18803.1| Identical to polygalacuronase isoenzyme 1 beta subunit homolog mRNA gb|U63373.  EST gb|AA404878 comes from this gene. [Arabidopsis thaliana](evalue: 4e-33, score=145)">
      <seq>atattttgtacttctgagactaatgcccaaacatccaaaatcaccaatctagattctaagatattctacacaaccagaacccctgatcaagctaaagtctatgctaaactcccaaatcaagccaaagtttatccctccaaaattcctaatcaagctaaggtctacacaaccaaaatccctaatctagattctaagatattctacgcgaccagaacccctgatcaagccaaggtctatccagctaatcttcccgaacaagctaaggtctatacatcaaaaatttatgcaacttcacactctcatagtcatcatcttggagaagtctctttcttcagagtctctaccctcaaacctggaaacacagtccatctagacaacttagtgaacccgttccctcatcgctcatttcttccatcacaaattgcctcaaagatctccattaactcaaaccatctccaacacttattccctcaaactttcacttcaccatacacaaaagataccacaaaaactaccatcctcaattgcaatgcacctactctaaaaggagaagttaaaacatgcgcgaaatccttggaagaaatgatagagttctcaaagagaagcttgaaacagaaccacctaatttcattgacaacagaaagcatacaagggtcaggacagaaactaaaaattgagaaatttcataaaatcaattcccaaaggagtgtctcatgccatgagatattccttccttttgctacatacttttgtcatttgctatcttcaactaacatttacgcggtggagctagttgatttaaacactaatgttcatgttaataaagctatggttgtttgtcatatggatacttcttcttggccagctgatcatccagttttcaaaaaattgaatttttcacctggaaatggagaggtttgtcattggatgtcacaagctgatcttgtttgggttggagatgatgcgcatgcataaaataattttttaaaaaaagtctacttatgttaattaagctttgagtttaattgtaaaaatggattgtcttttttcttgtttctatgtgtttaggaatagtaaggtattgtaattatggggaaaaaagtccaaatccttactttccctttcttgtgtgaagtgtgaattgtgatggtttttggtctttttatgtgtattttaataacttgcagttaatactcctattctaagttactggaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57368" stop="59182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57668" g_stop="58878" g_length="1211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1211" r_length="1211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1214" polyA_stop="1226"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-U327524" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1211</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57668" e_stop="58878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTGTACTTCTGAGACTAATGCCCAAACATCCAAAATCACCAATCTAGATTCTAAGATATTCTACACAACCAGAACCCCTGATCAAGCTAAAGTCTATGCTAAACTCCCAAATCAAGCCAAAGTTTATCCCTCCAAAATTCCTAATCAAGCTAAGGTCTACACAACCAAAATCCCTAATCTAGATTCTAAGATATTCTACGCGACCAGAACCCCTGATCAAGCCAAGGTCTATCCAGCTAATCTTCCCGAACAAGCTAAGGTCTATACATCAAAAATTTATGCAACTTCACACTCTCATAGTCATCATCTTGGAGAAGTCTCTTTCTTCAGAGTCTCTACCCTCAAACCTGGAAACACAGTCCATCTAGACAACTTAGTGAACCCGTTCCCTCATCGCTCATTTCTTCCATCACAAATTGCCTCAAAGATCTCCATTAACTCAAACCATCTCCAACACTTATTCCCTCAAACTTTCACTTCACCATACACAAAAGATACCACAAAAACTACCATCCTCAATTGCAATGCACCTACTCTAAAAGGAGAAGTTAAAACATGCGCGAAATCCTTGGAAGAAATGATAGAGTTCTCAAAGAGAAGCTTGAAACAGAACCACCTAATTTCATTGACAACAGAAAGCATACAAGGGTCAGGACAGAAACTAAAAATTGAGAAATTTCATAAAATCAATTCCCAAAGGAGTGTCTCATGCCATGAGATATTCCTTCCTTTTGCTACATACTTTTGTCATTTGCTATCTTCAACTAACATTTACGCGGTGGAGCTAGTTGATTTAAACACTAATGTTCATGTTAATAAAGCTATGGTTGTTTGTCATATGGATACTTCTTCTTGGCCAGCTGATCATCCAGTTTTCAAAAAATTGAATTTTTCACCTGGAAATGGAGAGGTTTGTCATTGGATGTCACAAGCTGATCTTGTTTGGGTTGGAGATGATGCGCATGCATAAAATAATTTTTTAAAAAAAGTCTACTTATGTTAATTAAGCTTTGAGTTTAATTGTAAAAATGGATTGTCTTTTTTCTTGTTTCTATGTGTTTAGGAATAGTAAGGTATTGTAATTATGGGGAAAAAAGTCCAAATCCTTACTTTCCCTTTCTTGTGTGAAGTGTGAATTGTGATGGTTTTTGGTCTTTTTATGTGTATTTTAATAACTTGCAGTTAATACTCCTATTCTAAGTTACT</genome_strand>
        <mrna_strand>ATATTTTGTACTTCTGAGACTAATGCCCAAACATCCAAAATCACCAATCTAGATTCTAAGATATTCTACACAACCAGAACCCCTGATCAAGCTAAAGTCTATGCTAAACTCCCAAATCAAGCCAAAGTTTATCCCTCCAAAATTCCTAATCAAGCTAAGGTCTACACAACCAAAATCCCTAATCTAGATTCTAAGATATTCTACGCGACCAGAACCCCTGATCAAGCCAAGGTCTATCCAGCTAATCTTCCCGAACAAGCTAAGGTCTATACATCAAAAATTTATGCAACTTCACACTCTCATAGTCATCATCTTGGAGAAGTCTCTTTCTTCAGAGTCTCTACCCTCAAACCTGGAAACACAGTCCATCTAGACAACTTAGTGAACCCGTTCCCTCATCGCTCATTTCTTCCATCACAAATTGCCTCAAAGATCTCCATTAACTCAAACCATCTCCAACACTTATTCCCTCAAACTTTCACTTCACCATACACAAAAGATACCACAAAAACTACCATCCTCAATTGCAATGCACCTACTCTAAAAGGAGAAGTTAAAACATGCGCGAAATCCTTGGAAGAAATGATAGAGTTCTCAAAGAGAAGCTTGAAACAGAACCACCTAATTTCATTGACAACAGAAAGCATACAAGGGTCAGGACAGAAACTAAAAATTGAGAAATTTCATAAAATCAATTCCCAAAGGAGTGTCTCATGCCATGAGATATTCCTTCCTTTTGCTACATACTTTTGTCATTTGCTATCTTCAACTAACATTTACGCGGTGGAGCTAGTTGATTTAAACACTAATGTTCATGTTAATAAAGCTATGGTTGTTTGTCATATGGATACTTCTTCTTGGCCAGCTGATCATCCAGTTTTCAAAAAATTGAATTTTTCACCTGGAAATGGAGAGGTTTGTCATTGGATGTCACAAGCTGATCTTGTTTGGGTTGGAGATGATGCGCATGCATAAAATAATTTTTTAAAAAAAGTCTACTTATGTTAATTAAGCTTTGAGTTTAATTGTAAAAATGGATTGTCTTTTTTCTTGTTTCTATGTGTTTAGGAATAGTAAGGTATTGTAATTATGGGGAAAAAAGTCCAAATCCTTACTTTCCCTTTCTTGTGTGAAGTGTGAATTGTGATGGTTTTTGGTCTTTTTATGTGTATTTTAATAACTTGCAGTTAATACTCCTATTCTAAGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324014" ref_strand="+" ref_description="SGN-U324014        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:18079448-18080040 FORWARD | Aliases: T1O24.28(evalue: 2e-27, score=119) genbank/nr: gi|18406272|ref|NP_566001.1| expressed protein [Arabidopsis thaliana] gi|25370827|pir||D84867 hypothetical protein At2g43540 [imported] - Arabidopsis thaliana gi|2288994|gb|AAB64323.1| expressed protein [Arabidopsis thaliana] gi|21555198|gb|AAM63802.1| unknown [Arabidopsis thaliana](evalue: 1e-25, score=119)">
      <seq>cggccgaattgacagctatggggctctcagcttctaagagagttagcaattcactccaaaattcatccgaattcaactcggcatgtgattcagtctatgatgattgtctctccctatcacagcacgctttcgccggagtgaaaccctaccagcttttctccgccgtggaacgcctgcacgcttctctctctccctccgtacctctcataaaaaattgggttaaatcgcctccgacccgattacaggtcgataaggccttcaaaatcgtgtcaacgcgccgatccggcgaaaaggagagtgaaattgtgcttgggaacgaggaattcaaggagttctcagtggaggtattttcggacgctgtcgtttcgtgtgcagggaaagagcttctaaagcgggttccggttggtgctttggggatcgctggcgttggtgcggtggtgaagcctgggaaagaattaattgcggcggcgattggtgcttacgcgctcggtgttgcaacatcggtatacgtcagcttggcttaaacgtattttttttgtttttttttaaaattacaaaaatgaataaaagtttttacaagtttggttaagcccaaaagtacaaattagtcatgttttaaattattataacccctaataagagactgaaagcaagtagaataattgtaattagatgattaacagtctttatccacatttatataatttgtataaattattttttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0246E15-XNAz8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0246E15.1" temp_strand="+" temp_description="C06HBa0246E15.1  AC211065.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0246E15 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60486" stop="61821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60789" g_stop="61517" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="738" r_length="729" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="739" polyA_stop="761"/>
      <MATCH_line gen_id="C06HBa0246E15.1" gen_strand="+" ref_id="SGN-U324014" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0246E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60789" e_stop="61517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAGCTATGGGGCTCTCAGCTTCTAAGAGAGTTAGCAATTCACTCCAAAATTCATCCGAATTCAACTCGGCATGTGATTCAGTCTATGATGATTGTCTCTCCCTATCACAGCACGCTTTCGCCGGAGTGAAACCCTACCAGCTTTTCTCCGCCGTGGAACGCCTGCACGCTTCTCTCTCTCCCTCCGTACCTCTCATAAAAAATTGGGTTAAATCGCCTCCGACCCGATTACAGGTCGATAAGGCCTTCAAAATCGTGTCAACGCGCCGATCCGGCGAAAAGGAGAGTGAAATTGTGCTTGGGAACGAGGAATTCAAGGAGTTCTCAGTGGAGGTATTTTCGGACGCTGTCGTTTCGTGTGCAGGGAAAGAGCTTCTAAAGCGGGTTCCGGTTGGTGCTTTGGGGATCGCTGGCGTTGGTGCGGTGGTGAAGCCTGGGAAAGAATTAATTGCGGCGGCGATTGGTGCTTACGCGCTCGGTGTTGCAACATCGGTATACGTCAGCTTGGCTTAAACGTATTTTTTTTGTTTTTTTTTAAAATTACAAAAATGAATAAAAGTTTTTACAAGTTTGGTTAAGCCCAAAAGTACAAATTAGTCATGTTTTAAATTATTATAACCCCTAATAAGAGACTGAAAGCAAGTAGAATAATTGTAATTAGATGATTAACAGTCTTTATCCACATTTATATAATTTGTATAAATTATTTTTTTTTTATAAAAAAAAA</genome_strand>
        <mrna_strand>TGACAGCTATGGGGCTCTCAGCTTCTAAGAGAGTTAGCAATTCACTCCAAAATTCATCCGAATTCAACTCGGCATGTGATTCAGTCTATGATGATTGTCTCTCCCTATCACAGCACGCTTTCGCCGGAGTGAAACCCTACCAGCTTTTCTCCGCCGTGGAACGCCTGCACGCTTCTCTCTCTCCCTCCGTACCTCTCATAAAAAATTGGGTTAAATCGCCTCCGACCCGATTACAGGTCGATAAGGCCTTCAAAATCGTGTCAACGCGCCGATCCGGCGAAAAGGAGAGTGAAATTGTGCTTGGGAACGAGGAATTCAAGGAGTTCTCAGTGGAGGTATTTTCGGACGCTGTCGTTTCGTGTGCAGGGAAAGAGCTTCTAAAGCGGGTTCCGGTTGGTGCTTTGGGGATCGCTGGCGTTGGTGCGGTGGTGAAGCCTGGGAAAGAATTAATTGCGGCGGCGATTGGTGCTTACGCGCTCGGTGTTGCAACATCGGTATACGTCAGCTTGGCTTAAACGTATTTTTTTTGTTTTTTTTTAAAATTACAAAAATGAATAAAAGTTTTTACAAGTTTGGTTAAGCCCAAAAGTACAAATTAGTCATGTTTTAAATTATTATAACCCCTAATAAGAGACTGAAAGCAAGTAGAATAATTGTAATTAGATGATTAACAGTCTTTATCCACATTTATATAATTTGTATAAATTATTTTTTTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>20</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3951" PGL_stop="2323"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3951" e_stop="3925"/>
            <exon e_start="3551" e_stop="3484"/>
            <exon e_start="3110" e_stop="2994"/>
            <exon e_start="2660" e_stop="2323"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.795" acc_prob="0.669" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.210" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3951" e_stop="3925" e_length="27"/>
          </exon>
          <intron i_serial="1" don_prob="0.795" acc_prob="0.669">
            <gDNA_intron_boundary i_start="3924" i_stop="3552" i_length="373"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3551" e_stop="3484" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.210">
            <gDNA_intron_boundary i_start="3483" i_stop="3111" i_length="373"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3110" e_stop="2994" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="2993" i_stop="2661" i_length="333"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="2660" e_stop="2323" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3951" stop="3925"/>
              <exon start="3551" stop="3484"/>
              <exon start="3110" stop="2994"/>
              <exon start="2660" stop="2323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336130" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGCAACACCCTCTACGGAGAAAACTT : CTTACAAGACACAGGTCTCCCGCAATGAAAACTTAGCGAAACTTCAAGCTGGTTATCTGTTTCCTGAG : ATCGCAAGAAGGAGATCTGCACACATGTTGAAACATCCTGATGCTCAAATTATAAGCCTTGGAATTGGTGACACTACCGAGCCCATTCCTGAAGTCATAACTTCTGCCATGGCAAAG : AGAGCACATGAACTGTCAACATTAAATGGTTACAGTGGTTATGGTGCTGAGCAAGGAGAAAAAGTAAGTAGTGCCCCCTCTCGTCATATTTCAGTAATATGATATTAGCTCTACTATTTATTGTCCAATCCTTGTTTCTCTTCCTTCTTTTGCTACAATAATAATGGTTCTGGCCTTCACTGATAGTTTGTCTTTCCTCGTTTTGTACCAATTTGATTGTTCATTTGTCCTTTTCTTTCCTCAAATACATTGCAATATTCTTTATTCAGGTATCCACTCAATAAAGTTAAAAAACTTCCTCTTCTATTCATAACGTCATTAAGGGATGTGCAGATGTG</gDNA_template>
            <first_frame> L  Q  H  P  L  R  R  K  L  :  L  T  R  H  R  S  P  A  M  K  T  *  R  N  F  K  L  V  I  C  F  L  R :   S  Q  E  G  D  L  H  T  C  *  N  I  L  M  L  K  L  *  A  L  E  L  V  T  L  P  S  P  F  L  K  S  *  L  L  P  W  Q  R :   E  H  M  N  C  Q  H  *  M  V  T  V  V  M  V  L  S  K  E  K  K  *  V  V  P  P  L  V  I  F  Q  *  Y  D  I  S  S  T  I  Y  C  P  I  L  V  S  L  P  S  F  A  T  I  I  M  V  L  A  F  T  D  S  L  S  F  L  V  L  Y  Q  F  D  C  S  F  V  L  F  F  P  Q  I  H  C  N  I  L  Y  S  G  I  H  S  I  K  L  K  N  F  L  F  Y  S  *  R  H  *  G  M  C  R  C  </first_frame>
            <second_frame>  C  N  T  L  Y  G  E  N  F :   L  Q  D  T  G  L  P  Q  *  K  L  S  E  T  S  S  W  L  S  V  S  *   : D  R  K  K  E  I  C  T  H  V  E  T  S  *  C  S  N  Y  K  P  W  N  W  *  H  Y  R  A  H  S  *  S  H  N  F  C  H  G  K   : E  S  T  *  T  V  N  I  K  W  L  Q  W  L  W  C  *  A  R  R  K  S  K  *  C  P  L  S  S  Y  F  S  N  M  I  L  A  L  L  F  I  V  Q  S  L  F  L  F  L  L  L  L  Q  *  *  W  F  W  P  S  L  I  V  C  L  S  S  F  C  T  N  L  I  V  H  L  S  F  S  F  L  K  Y  I  A  I  F  F  I  Q  V  S  T  Q  *  S  *  K  T  S  S  S  I  H  N  V  I  K  G  C  A  D  V </second_frame>
            <third_frame>   A  T  P  S  T  E  K  T   : S  Y  K  T  Q  V  S  R  N  E  N  L  A  K  L  Q  A  G  Y  L  F  P  E  :  I  A  R  R  R  S  A  H  M  L  K  H  P  D  A  Q  I  I  S  L  G  I  G  D  T  T  E  P  I  P  E  V  I  T  S  A  M  A  K  :  R  A  H  E  L  S  T  L  N  G  Y  S  G  Y  G  A  E  Q  G  E  K  V  S  S  A  P  S  R  H  I  S  V  I  *  Y  *  L  Y  Y  L  L  S  N  P  C  F  S  S  F  F  C  Y  N  N  N  G  S  G  L  H  *  *  F  V  F  P  R  F  V  P  I  *  L  F  I  C  P  F  L  S  S  N  T  L  Q  Y  S  L  F  R  Y  P  L  N  K  V  K  K  L  P  L  L  F  I  T  S  L  R  D  V  Q  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3949" stop="3925"/>
                    <exon start="3551" stop="3484"/>
                    <exon start="3110" stop="2994"/>
                    <exon start="2660" stop="2559"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATPSTEKTSYKTQVSRNENLAKLQAGYLFPEIARRRSAHMLKHPDAQIISLGIGDTTEPIPEVITSAMAKRAHELSTLNGYSGYGAEQGEKVSSAPSRHISVI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2563" stop="2348"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YDISSTIYCPILVSLPSFATIIMVLAFTDSLSFLVLYQFDCSFVLFFPQIHCNILYSGIHSIKLKNFLFYS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6064" PGL_stop="9790"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6064" e_stop="6123"/>
            <exon e_start="8029" e_stop="8085"/>
            <exon e_start="8169" e_stop="8372"/>
            <exon e_start="8516" e_stop="8575"/>
            <exon e_start="8874" e_stop="9000"/>
            <exon e_start="9342" e_stop="9790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.930" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.748" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6064" e_stop="6123" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.930" acc_prob="0.986">
            <gDNA_intron_boundary i_start="6124" i_stop="8028" i_length="1905"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8029" e_stop="8085" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.980">
            <gDNA_intron_boundary i_start="8086" i_stop="8168" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8169" e_stop="8372" e_length="204"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.748">
            <gDNA_intron_boundary i_start="8373" i_stop="8515" i_length="143"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8516" e_stop="8575" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.986">
            <gDNA_intron_boundary i_start="8576" i_stop="8873" i_length="298"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8874" e_stop="9000" e_length="127"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9001" i_stop="9341" i_length="341"/>
          </intron>
          <exon e_serial="6" e_score="0.984">
            <gDNA_exon_boundary e_start="9342" e_stop="9790" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6064" stop="6123"/>
              <exon start="8029" stop="8085"/>
              <exon start="8169" stop="8372"/>
              <exon start="8516" stop="8575"/>
              <exon start="8874" stop="9000"/>
              <exon start="9342" stop="9790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGATCAGGCGAAATCCTAAGGAAAATTGATTTGAAAAATTCGACATGGATCTTAATCCA : CCTGCAGGGGAGGACTATGCACACCCACAGATATGTTTTTTCCATGTGCTCTTCAAG : GCAGCAGCATTAGCGTTTTATATTCTGTCAGCTTTATTTGTTGATAGTTTTGTTATCATCTTTGTGGTAACTGTTCTTTTAGCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATGAAATAGATGACAATGGCGAGAGTGTGTGGAGATTTGAGTGCCTTGATCAAGAG : TCAATGGCTCGCATGAACAAGAAGGATTCCTGGCTGTTTTGGTGGACTTTGTACCTAACA : GCTGTTGCTTGGTTCTTTCTCGCGATATTCTCCCTCATTAGGTTCCAAGCTGATTATCTTCTCGTTGTTGGAGTTTGCTTGACTCTCAGCGTCGCAAATATTGTTGGTTTTACTAGATGCCGCAAAG : ATGCTAAGAAGCAGCTTCAAGCATTTGCAACCCAGACCCTCACTTCTCGGTTCTCCTCTACTCTACAGTCGGCATTTAGTGTTGTTTGAACAATTAATACAGAACAAGCTACTCGTGAGAGGAAACTGGTCGTCAGTGTCCACCTCTACGAACAATCATGTATTGATTATATAATGGTGGTTTGTATACGCTGTGAAATTATGATGGCACATATCGGAAGGATGCTTAGGAGATTTTGACATGGTGTTAATTTGGACCTCTCCTTTATTGAGGTCTTGTACATGCAGAACATGAACGAACTGGGAAAACGTTTTTGTTCCTTTCAGTTTTCATGAATCCAATTGCTTCATTGTATTTTTATTTTTTTTGCACCGCACGGCTGGTGAATCGACGTATGGGCCATATGCATAAATGTATCTGAAATTTGCCATTCACGTTCTGCAGCAAGT</gDNA_template>
            <first_frame> E  I  R  R  N  P  K  E  N  *  F  E  K  F  D  M  D  L  N  P  :  P  A  G  E  D  Y  A  H  P  Q  I  C  F  F  H  V  L  F  K  :  A  A  A  L  A  F  Y  I  L  S  A  L  F  V  D  S  F  V  I  I  F  V  V  T  V  L  L  A  A  L  D  F  W  V  V  K  N  V  S  G  R  I  L  V  G  L  R  W  W  N  E  I  D  D  N  G  E  S  V  W  R  F  E  C  L  D  Q  E  :  S  M  A  R  M  N  K  K  D  S  W  L  F  W  W  T  L  Y  L  T  :  A  V  A  W  F  F  L  A  I  F  S  L  I  R  F  Q  A  D  Y  L  L  V  V  G  V  C  L  T  L  S  V  A  N  I  V  G  F  T  R  C  R  K   : D  A  K  K  Q  L  Q  A  F  A  T  Q  T  L  T  S  R  F  S  S  T  L  Q  S  A  F  S  V  V  *  T  I  N  T  E  Q  A  T  R  E  R  K  L  V  V  S  V  H  L  Y  E  Q  S  C  I  D  Y  I  M  V  V  C  I  R  C  E  I  M  M  A  H  I  G  R  M  L  R  R  F  *  H  G  V  N  L  D  L  S  F  I  E  V  L  Y  M  Q  N  M  N  E  L  G  K  R  F  C  S  F  Q  F  S  *  I  Q  L  L  H  C  I  F  I  F  F  A  P  H  G  W  *  I  D  V  W  A  I  C  I  N  V  S  E  I  C  H  S  R  S  A  A  S </first_frame>
            <second_frame>  R  S  G  E  I  L  R  K  I  D  L  K  N  S  T  W  I  L  I  H :   L  Q  G  R  T  M  H  T  H  R  Y  V  F  S  M  C  S  S  R :   Q  Q  H  *  R  F  I  F  C  Q  L  Y  L  L  I  V  L  L  S  S  L  W  *  L  F  F  *  L  L  L  T  F  G  W  L  R  T  S  V  D  V  F  L  W  V  *  G  G  G  M  K  *  M  T  M  A  R  V  C  G  D  L  S  A  L  I  K  S :   Q  W  L  A  *  T  R  R  I  P  G  C  F  G  G  L  C  T  *  Q :   L  L  L  G  S  F  S  R  Y  S  P  S  L  G  S  K  L  I  I  F  S  L  L  E  F  A  *  L  S  A  S  Q  I  L  L  V  L  L  D  A  A  K  :  M  L  R  S  S  F  K  H  L  Q  P  R  P  S  L  L  G  S  P  L  L  Y  S  R  H  L  V  L  F  E  Q  L  I  Q  N  K  L  L  V  R  G  N  W  S  S  V  S  T  S  T  N  N  H  V  L  I  I  *  W  W  F  V  Y  A  V  K  L  *  W  H  I  S  E  G  C  L  G  D  F  D  M  V  L  I  W  T  S  P  L  L  R  S  C  T  C  R  T  *  T  N  W  E  N  V  F  V  P  F  S  F  H  E  S  N  C  F  I  V  F  L  F  F  L  H  R  T  A  G  E  S  T  Y  G  P  Y  A  *  M  Y  L  K  F  A  I  H  V  L  Q  Q   </second_frame>
            <third_frame>   D  Q  A  K  S  *  G  K  L  I  *  K  I  R  H  G  S  *  S   : T  C  R  G  G  L  C  T  P  T  D  M  F  F  P  C  A  L  Q   : G  S  S  I  S  V  L  Y  S  V  S  F  I  C  *  *  F  C  Y  H  L  C  G  N  C  S  F  S  C  S  *  L  L  G  G  *  E  R  Q  W  T  Y  S  C  G  F  K  V  V  E  *  N  R  *  Q  W  R  E  C  V  E  I  *  V  P  *  S  R   : V  N  G  S  H  E  Q  E  G  F  L  A  V  L  V  D  F  V  P  N   : S  C  C  L  V  L  S  R  D  I  L  P  H  *  V  P  S  *  L  S  S  R  C  W  S  L  L  D  S  Q  R  R  K  Y  C  W  F  Y  *  M  P  Q  R :   C  *  E  A  A  S  S  I  C  N  P  D  P  H  F  S  V  L  L  Y  S  T  V  G  I  *  C  C  L  N  N  *  Y  R  T  S  Y  S  *  E  E  T  G  R  Q  C  P  P  L  R  T  I  M  Y  *  L  Y  N  G  G  L  Y  T  L  *  N  Y  D  G  T  Y  R  K  D  A  *  E  I  L  T  W  C  *  F  G  P  L  L  Y  *  G  L  V  H  A  E  H  E  R  T  G  K  T  F  L  F  L  S  V  F  M  N  P  I  A  S  L  Y  F  Y  F  F  C  T  A  R  L  V  N  R  R  M  G  H  M  H  K  C  I  *  N  L  P  F  T  F  C  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6094" stop="6123"/>
                    <exon start="8029" stop="8085"/>
                    <exon start="8169" stop="8372"/>
                    <exon start="8516" stop="8575"/>
                    <exon start="8874" stop="9000"/>
                    <exon start="9342" stop="9430"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEKFDMDLNPPAGEDYAHPQICFFHVLFKAAALAFYILSALFVDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEIDDNGESVWRFECLDQESMARMNKKDSWLFWWTLYLTAVAWFFLAIFSLIRFQADYLLVVGVCLTLSVANIVGFTRCRKDAKKQLQAFATQTLTSRFSSTLQSAFSVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="10834" PGL_stop="14523"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10834" e_stop="11044"/>
            <exon e_start="11562" e_stop="11696"/>
            <exon e_start="11847" e_stop="11933"/>
            <exon e_start="12028" e_stop="12118"/>
            <exon e_start="12263" e_stop="12317"/>
            <exon e_start="12531" e_stop="12591"/>
            <exon e_start="13025" e_stop="13246"/>
            <exon e_start="13557" e_stop="13673"/>
            <exon e_start="13759" e_stop="13848"/>
            <exon e_start="14194" e_stop="14523"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.878" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.502" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.779" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.881" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10834" e_stop="11044" e_length="211"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.961">
            <gDNA_intron_boundary i_start="11045" i_stop="11561" i_length="517"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11562" e_stop="11696" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.878" acc_prob="0.988">
            <gDNA_intron_boundary i_start="11697" i_stop="11846" i_length="150"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11847" e_stop="11933" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.502">
            <gDNA_intron_boundary i_start="11934" i_stop="12027" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12028" e_stop="12118" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="12119" i_stop="12262" i_length="144"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12263" e_stop="12317" e_length="55"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.779">
            <gDNA_intron_boundary i_start="12318" i_stop="12530" i_length="213"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12531" e_stop="12591" e_length="61"/>
          </exon>
          <intron i_serial="6" don_prob="0.864" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12592" i_stop="13024" i_length="433"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="13025" e_stop="13246" e_length="222"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="13247" i_stop="13556" i_length="310"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="13557" e_stop="13673" e_length="117"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="13674" i_stop="13758" i_length="85"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="13759" e_stop="13848" e_length="90"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.881">
            <gDNA_intron_boundary i_start="13849" i_stop="14193" i_length="345"/>
          </intron>
          <exon e_serial="10" e_score="0.997">
            <gDNA_exon_boundary e_start="14194" e_stop="14523" e_length="330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10834" stop="11044"/>
              <exon start="11562" stop="11696"/>
              <exon start="11847" stop="11933"/>
              <exon start="12028" stop="12118"/>
              <exon start="12263" stop="12317"/>
              <exon start="12531" stop="12591"/>
              <exon start="13025" stop="13246"/>
              <exon start="13557" stop="13673"/>
              <exon start="13759" stop="13848"/>
              <exon start="14194" stop="14523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313631" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATGGACATCAAGAAAATCATCATAGCCCTTCTTCTTCTTCTTTATTCTCTGCCCCAAGTTCTTCTTCACACTGAGGAAGGAAAAAAAGGCACCAAATCAACAACAACATGGCTAGTTTGGTTGCTATTCAACCCAAACAGCCTTCTTTCTCTCTCCTTCCTTCTTCCAATTCTGACTTCAATGGTGCCAGATTGATCTCCTCATTTCAG : TATAAGAGGAAACCATGCTTGTCAAAAGGAGCATTGCAAGTTACAGCCTCGAGTGAAAAGAAAATCCTGATAATGGGAGGCACGCGATTCATTGGTGTGTTCCTATCGAGACTTCTTGTGAAAGAAGGCCACCAG : GTTACTCTATTCACAAGAGGAAAAGCTCCAATCTCTCAACAATTGCCAGGTGAATCGGACCAGGATTATGCTGATTTCTCCTCCAAG : TTATTGCACTTGAAGGGTGACAGAATGGATTTCGATTTTGTGAAGAGCAGTCTTTCTGCAGAGGGCTATGATGTTGTGTATGACATAAATG : GACGTGAAGCAACTGAAGTGGAGCCAATATTGGATGCATTACCTAATCTAGAACA : GTACATCTACTGCTCTTCAGCTGGTGTATACCTTAAAACTGATTATTTACCACATTTTGAG : GTTGATGCAGGTGACCCGAAGAGTAGGCATAAAGGAAAGCTTGAGACAGAAAGCTTGTTAGTATCACGAGATGTTAATTGGACTTCTCTAAGGCCTGTTTATATTTATGGGCCACTTAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGATTGAAGGCTGGTCGCCCAATTCCGATTCCTAACTCAGGGATGCAAATAACTCAACTTGGACATGTGAAG : GATCTTGCAAAGGCTTTTGTTCAGGTTCTTGGAAATGAGAAAGCAAGCAAGCAAGTATTTAACATATCCGGAGAGAAATATGTCACATTTGATGGATTAGCTAAGGCTTGCGCCAAG : GCTGGTGGTTTCCCGGAACCCGAGCTTGTTCATTACAACCCTAAGGAGTTCGATTTTGGCAAGAAGAAAGCATTCCCATTCCGTGACCAG : CATTTCTTTACATCCATCGAGAAGTCAAAGGCTGAGCTAGGATGGAAACCTGATTTTGATCTGGTGGAAGGTCTTACAGACTCTTACAACCTAGATTTCGGACGAGGAACATTCAGGAAAGCAGCTGATTTCTCTACAGATGATATGATTCTTGAAAAGAAACTAGTTCCCCAGAGCTAATATTTCTGTTTTTCATTTCATTAGTTTTGGTTTCTTGCTTTTTCTCCAAGAAGTTCACAAGTCATTAGTGGCAAACTATTTGAAATTTTCCTTGTATATTAACTTCACTAAAATGAAATGAATGACAACTATTGTCATTTTGCCATCAAC</gDNA_template>
            <first_frame> I  W  T  S  R  K  S  S  *  P  F  F  F  F  F  I  L  C  P  K  F  F  F  T  L  R  K  E  K  K  A  P  N  Q  Q  Q  H  G  *  F  G  C  Y  S  T  Q  T  A  F  F  L  S  P  S  F  F  Q  F  *  L  Q  W  C  Q  I  D  L  L  I  S   : V  *  E  E  T  M  L  V  K  R  S  I  A  S  Y  S  L  E  *  K  E  N  P  D  N  G  R  H  A  I  H  W  C  V  P  I  E  T  S  C  E  R  R  P  P   : G  Y  S  I  H  K  R  K  S  S  N  L  S  T  I  A  R  *  I  G  P  G  L  C  *  F  L  L  Q   : V  I  A  L  E  G  *  Q  N  G  F  R  F  C  E  E  Q  S  F  C  R  G  L  *  C  C  V  *  H  K  W :   T  *  S  N  *  S  G  A  N  I  G  C  I  T  *  S  R  T  :  V  H  L  L  L  F  S  W  C  I  P  *  N  *  L  F  T  T  F  *   : G  *  C  R  *  P  E  E  *  A  *  R  K  A  *  D  R  K  L  V  S  I  T  R  C  *  L  D  F  S  K  A  C  L  Y  L  W  A  T  *  L  Q  S  C  *  R  V  V  L  P  P  I  E  G  W  S  P  N  S  D  S  *  L  R  D  A  N  N  S  T  W  T  C  E   : G  S  C  K  G  F  C  S  G  S  W  K  *  E  S  K  Q  A  S  I  *  H  I  R  R  E  I  C  H  I  *  W  I  S  *  G  L  R  Q   : G  W  W  F  P  G  T  R  A  C  S  L  Q  P  *  G  V  R  F  W  Q  E  E  S  I  P  I  P  *  P   : A  F  L  Y  I  H  R  E  V  K  G  *  A  R  M  E  T  *  F  *  S  G  G  R  S  Y  R  L  L  Q  P  R  F  R  T  R  N  I  Q  E  S  S  *  F  L  Y  R  *  Y  D  S  *  K  E  T  S  S  P  E  L  I  F  L  F  F  I  S  L  V  L  V  S  C  F  F  S  K  K  F  T  S  H  *  W  Q  T  I  *  N  F  P  C  I  L  T  S  L  K  *  N  E  *  Q  L  L  S  F  C  H  Q  </first_frame>
            <second_frame>  Y  G  H  Q  E  N  H  H  S  P  S  S  S  S  L  F  S  A  P  S  S  S  S  H  *  G  R  K  K  R  H  Q  I  N  N  N  M  A  S  L  V  A  I  Q  P  K  Q  P  S  F  S  L  L  P  S  S  N  S  D  F  N  G  A  R  L  I  S  S  F  Q  :  Y  K  R  K  P  C  L  S  K  G  A  L  Q  V  T  A  S  S  E  K  K  I  L  I  M  G  G  T  R  F  I  G  V  F  L  S  R  L  L  V  K  E  G  H  Q  :  V  T  L  F  T  R  G  K  A  P  I  S  Q  Q  L  P  G  E  S  D  Q  D  Y  A  D  F  S  S  K  :  L  L  H  L  K  G  D  R  M  D  F  D  F  V  K  S  S  L  S  A  E  G  Y  D  V  V  Y  D  I  N   : G  R  E  A  T  E  V  E  P  I  L  D  A  L  P  N  L  E  Q :   Y  I  Y  C  S  S  A  G  V  Y  L  K  T  D  Y  L  P  H  F  E  :  V  D  A  G  D  P  K  S  R  H  K  G  K  L  E  T  E  S  L  L  V  S  R  D  V  N  W  T  S  L  R  P  V  Y  I  Y  G  P  L  N  Y  N  P  V  E  E  W  F  F  H  R  L  K  A  G  R  P  I  P  I  P  N  S  G  M  Q  I  T  Q  L  G  H  V  K  :  D  L  A  K  A  F  V  Q  V  L  G  N  E  K  A  S  K  Q  V  F  N  I  S  G  E  K  Y  V  T  F  D  G  L  A  K  A  C  A  K  :  A  G  G  F  P  E  P  E  L  V  H  Y  N  P  K  E  F  D  F  G  K  K  K  A  F  P  F  R  D  Q  :  H  F  F  T  S  I  E  K  S  K  A  E  L  G  W  K  P  D  F  D  L  V  E  G  L  T  D  S  Y  N  L  D  F  G  R  G  T  F  R  K  A  A  D  F  S  T  D  D  M  I  L  E  K  K  L  V  P  Q  S  *  Y  F  C  F  S  F  H  *  F  W  F  L  A  F  S  P  R  S  S  Q  V  I  S  G  K  L  F  E  I  F  L  V  Y  *  L  H  *  N  E  M  N  D  N  Y  C  H  F  A  I  N </second_frame>
            <third_frame>   M  D  I  K  K  I  I  I  A  L  L  L  L  L  Y  S  L  P  Q  V  L  L  H  T  E  E  G  K  K  G  T  K  S  T  T  T  W  L  V  W  L  L  F  N  P  N  S  L  L  S  L  S  F  L  L  P  I  L  T  S  M  V  P  D  *  S  P  H  F  S :   I  R  G  N  H  A  C  Q  K  E  H  C  K  L  Q  P  R  V  K  R  K  S  *  *  W  E  A  R  D  S  L  V  C  S  Y  R  D  F  L  *  K  K  A  T  R :   L  L  Y  S  Q  E  E  K  L  Q  S  L  N  N  C  Q  V  N  R  T  R  I  M  L  I  S  P  P  S :   Y  C  T  *  R  V  T  E  W  I  S  I  L  *  R  A  V  F  L  Q  R  A  M  M  L  C  M  T  *  M  :  D  V  K  Q  L  K  W  S  Q  Y  W  M  H  Y  L  I  *  N   : S  T  S  T  A  L  Q  L  V  Y  T  L  K  L  I  I  Y  H  I  L  R :   L  M  Q  V  T  R  R  V  G  I  K  E  S  L  R  Q  K  A  C  *  Y  H  E  M  L  I  G  L  L  *  G  L  F  I  F  M  G  H  L  T  T  I  L  L  K  S  G  S  S  T  D  *  R  L  V  A  Q  F  R  F  L  T  Q  G  C  K  *  L  N  L  D  M  *  R :   I  L  Q  R  L  L  F  R  F  L  E  M  R  K  Q  A  S  K  Y  L  T  Y  P  E  R  N  M  S  H  L  M  D  *  L  R  L  A  P  R :   L  V  V  S  R  N  P  S  L  F  I  T  T  L  R  S  S  I  L  A  R  R  K  H  S  H  S  V  T  S :   I  S  L  H  P  S  R  S  Q  R  L  S  *  D  G  N  L  I  L  I  W  W  K  V  L  Q  T  L  T  T  *  I  S  D  E  E  H  S  G  K  Q  L  I  S  L  Q  M  I  *  F  L  K  R  N  *  F  P  R  A  N  I  S  V  F  H  F  I  S  F  G  F  L  L  F  L  Q  E  V  H  K  S  L  V  A  N  Y  L  K  F  S  L  Y  I  N  F  T  K  M  K  *  M  T  T  I  V  I  L  P  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10910" stop="11044"/>
                    <exon start="11562" stop="11696"/>
                    <exon start="11847" stop="11933"/>
                    <exon start="12028" stop="12118"/>
                    <exon start="12263" stop="12317"/>
                    <exon start="12531" stop="12591"/>
                    <exon start="13025" stop="13246"/>
                    <exon start="13557" stop="13673"/>
                    <exon start="13759" stop="13848"/>
                    <exon start="14194" stop="14373"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1170</number_coding_nucleotides>
                  <number_encoded_amino_acids>390</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRKKRHQINNNMASLVAIQPKQPSFSLLPSSNSDFNGARLISSFQYKRKPCLSKGALQVTASSEKKILIMGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPISQQLPGESDQDYADFSSKLLHLKGDRMDFDFVKSSLSAEGYDVVYDINGREATEVEPILDALPNLEQYIYCSSAGVYLKTDYLPHFEVDAGDPKSRHKGKLETESLLVSRDVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGMQITQLGHVKDLAKAFVQVLGNEKASKQVFNISGEKYVTFDGLAKACAKAGGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFTSIEKSKAELGWKPDFDLVEGLTDSYNLDFGRGTFRKAADFSTDDMILEKKLVPQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="18406" PGL_stop="19329"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18406" e_stop="19329"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="18406" e_stop="19329" e_length="924"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18406" stop="19329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324622" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAACTTGCACTTTATATATTCTCCCAAAAGCTACTCCTAATTTGTCTCCTATTTTTTCTCAACAAAACAAACTACAACCACCCCTTAATAGTTTACAATCCAAAAACCAAATGCAATTCCCAGCCATTTTCTTCAAAACTCGTTGCATTTTCAATCTCTTCAACCCAATCCTCCTCTCCTTACTCCCAAAAAAACTCATCTCCTTCCTTCCTCCATCTTGGTTCCACCAAAAACGCATCCATTCGCGGTCACCGGCGCCGCCACAGCAGTCGCCGGTTTCCGTTTCCGACGCGGTTGAATCGCATCAGAAGAGAATGGACTCAGACGAACTCCGACGTATCTTCCAAATCTTCGATCGGAACGGCGACGGACGGATAACGAAGAATGAATTAAACAGTTCGTTAGAGAATATGGGGATATTCATACCAGATCCGGAATTAATCCAGATGATCGAGAAAATCGATGTGAATGGAGACGGTTGCGTTGACATAGATGAGTTCGGTTCGCTTTACCAGACCATCATGGATGAACGCGATGAAGAAGAAGATATGCGTGAGGCATTCAATGTGTTCGATCAAAACGGCGACGGATTCATTTGTGTTGAGGAATTGAAATCTGTTCTCGCATCGTTAGGGCTAAAACAGGGACGAACCGTAGAGGATTGTAAACAAATGATTAACAAAGTGGACATTGATGGAGATGGAATGGTTAATTATGATGAGTTTAAGCAGATGATGAGAGGAGGTGGTTTTGCTGCATTGAGTTAGTTTTATTTTTATTTTAATTATTTCGTCTGTTTTTTTACTCACTATTTTTATTATTAAAATAGACAAGGAAAGAATAACTTTTATTTTTATTTTTTTAATGTCATAGGCGGTGACATGTAAATAAATTGTTACTGCTATTATTTTATTTTTTCAATT</gDNA_template>
            <first_frame> Q  T  C  T  L  Y  I  L  P  K  A  T  P  N  L  S  P  I  F  S  Q  Q  N  K  L  Q  P  P  L  N  S  L  Q  S  K  N  Q  M  Q  F  P  A  I  F  F  K  T  R  C  I  F  N  L  F  N  P  I  L  L  S  L  L  P  K  K  L  I  S  F  L  P  P  S  W  F  H  Q  K  R  I  H  S  R  S  P  A  P  P  Q  Q  S  P  V  S  V  S  D  A  V  E  S  H  Q  K  R  M  D  S  D  E  L  R  R  I  F  Q  I  F  D  R  N  G  D  G  R  I  T  K  N  E  L  N  S  S  L  E  N  M  G  I  F  I  P  D  P  E  L  I  Q  M  I  E  K  I  D  V  N  G  D  G  C  V  D  I  D  E  F  G  S  L  Y  Q  T  I  M  D  E  R  D  E  E  E  D  M  R  E  A  F  N  V  F  D  Q  N  G  D  G  F  I  C  V  E  E  L  K  S  V  L  A  S  L  G  L  K  Q  G  R  T  V  E  D  C  K  Q  M  I  N  K  V  D  I  D  G  D  G  M  V  N  Y  D  E  F  K  Q  M  M  R  G  G  G  F  A  A  L  S  *  F  Y  F  Y  F  N  Y  F  V  C  F  F  T  H  Y  F  Y  Y  *  N  R  Q  G  K  N  N  F  Y  F  Y  F  F  N  V  I  G  G  D  M  *  I  N  C  Y  C  Y  Y  F  I  F  S  I </first_frame>
            <second_frame>  K  L  A  L  Y  I  F  S  Q  K  L  L  L  I  C  L  L  F  F  L  N  K  T  N  Y  N  H  P  L  I  V  Y  N  P  K  T  K  C  N  S  Q  P  F  S  S  K  L  V  A  F  S  I  S  S  T  Q  S  S  S  P  Y  S  Q  K  N  S  S  P  S  F  L  H  L  G  S  T  K  N  A  S  I  R  G  H  R  R  R  H  S  S  R  R  F  P  F  P  T  R  L  N  R  I  R  R  E  W  T  Q  T  N  S  D  V  S  S  K  S  S  I  G  T  A  T  D  G  *  R  R  M  N  *  T  V  R  *  R  I  W  G  Y  S  Y  Q  I  R  N  *  S  R  *  S  R  K  S  M  *  M  E  T  V  A  L  T  *  M  S  S  V  R  F  T  R  P  S  W  M  N  A  M  K  K  K  I  C  V  R  H  S  M  C  S  I  K  T  A  T  D  S  F  V  L  R  N  *  N  L  F  S  H  R  *  G  *  N  R  D  E  P  *  R  I  V  N  K  *  L  T  K  W  T  L  M  E  M  E  W  L  I  M  M  S  L  S  R  *  *  E  E  V  V  L  L  H  *  V  S  F  I  F  I  L  I  I  S  S  V  F  L  L  T  I  F  I  I  K  I  D  K  E  R  I  T  F  I  F  I  F  L  M  S  *  A  V  T  C  K  *  I  V  T  A  I  I  L  F  F  Q   </second_frame>
            <third_frame>   N  L  H  F  I  Y  S  P  K  S  Y  S  *  F  V  S  Y  F  F  S  T  K  Q  T  T  T  T  P  *  *  F  T  I  Q  K  P  N  A  I  P  S  H  F  L  Q  N  S  L  H  F  Q  S  L  Q  P  N  P  P  L  L  T  P  K  K  T  H  L  L  P  S  S  I  L  V  P  P  K  T  H  P  F  A  V  T  G  A  A  T  A  V  A  G  F  R  F  R  R  G  *  I  A  S  E  E  N  G  L  R  R  T  P  T  Y  L  P  N  L  R  S  E  R  R  R  T  D  N  E  E  *  I  K  Q  F  V  R  E  Y  G  D  I  H  T  R  S  G  I  N  P  D  D  R  E  N  R  C  E  W  R  R  L  R  *  H  R  *  V  R  F  A  L  P  D  H  H  G  *  T  R  *  R  R  R  Y  A  *  G  I  Q  C  V  R  S  K  R  R  R  I  H  L  C  *  G  I  E  I  C  S  R  I  V  R  A  K  T  G  T  N  R  R  G  L  *  T  N  D  *  Q  S  G  H  *  W  R  W  N  G  *  L  *  *  V  *  A  D  D  E  R  R  W  F  C  C  I  E  L  V  L  F  L  F  *  L  F  R  L  F  F  Y  S  L  F  L  L  L  K  *  T  R  K  E  *  L  L  F  L  F  F  *  C  H  R  R  *  H  V  N  K  L  L  L  L  L  F  Y  F  F  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18406" stop="19173"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTCTLYILPKATPNLSPIFSQQNKLQPPLNSLQSKNQMQFPAIFFKTRCIFNLFNPILLSLLPKKLISFLPPSWFHQKRIHSRSPAPPQQSPVSVSDAVESHQKRMDSDELRRIFQIFDRNGDGRITKNELNSSLENMGIFIPDPELIQMIEKIDVNGDGCVDIDEFGSLYQTIMDERDEEEDMREAFNVFDQNGDGFICVEELKSVLASLGLKQGRTVEDCKQMINKVDIDGDGMVNYDEFKQMMRGGGFAALS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="21445" PGL_stop="22165"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21445" e_stop="22165"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="21445" e_stop="22165" e_length="721"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21445" stop="22165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325731" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTTTCGGAACCAAACAACTCCTACTAGATCAGTGACCTTACGGCGTCGTTTGTTCATCTTCTCCGCAATTATTCTATTCTTCATTCGGATTCAGTTTCTTTGGAGAATTTACTTGGGTTTTTTGCTTAGTGTTAATTCCCTGGTAATTCCTCTCCCTTGCCGATATAGTTCAATTTTTTTTATGTGGTGTTCCGTTGATTGGGCCTCAGTTTGAATTTTTTTTAATTTTAACTTACATTAGCATTAACAGCTATAATTTGCTGTGTTAATTAATCGTACATTGTTTGAATCTCATTAATTATGTGTAATTTAGTGGGTAAGTTGATGTTAACGGGGAAAAGATTATATTCCCGTAATATTTAAGGTAATAATCTAACAATTGATGGTTTATGAGCTGTTTAATGGCTTTGTTAAATGTATTTGATGCTTTGTAGAATTTAATCTCTCAGTAATAATATAACAATTGACTTCTGTGTTTTTTTTTTCTTTATTGACGTTGCGATTTGTATAATTTTCGATCTAGGTGAAATTCTATAGGTTTTGTGTTAAAATACAAACAATGTTTGTCTAGTTTTGGATATGAAATGCTAAGATGGAATTAGGAAGGGGAAGAGGTTTATTTTTGGAATTAGTGAAGGTATGATTGGATTAATCAGCATCGGAGTTTAGATGGAGTAACATGGTCAGTGATGATTCATATAGCGAGACGTAGTTATTTA</gDNA_template>
            <first_frame> L  F  R  N  Q  T  T  P  T  R  S  V  T  L  R  R  R  L  F  I  F  S  A  I  I  L  F  F  I  R  I  Q  F  L  W  R  I  Y  L  G  F  L  L  S  V  N  S  L  V  I  P  L  P  C  R  Y  S  S  I  F  F  M  W  C  S  V  D  W  A  S  V  *  I  F  F  N  F  N  L  H  *  H  *  Q  L  *  F  A  V  L  I  N  R  T  L  F  E  S  H  *  L  C  V  I  *  W  V  S  *  C  *  R  G  K  D  Y  I  P  V  I  F  K  V  I  I  *  Q  L  M  V  Y  E  L  F  N  G  F  V  K  C  I  *  C  F  V  E  F  N  L  S  V  I  I  *  Q  L  T  S  V  F  F  F  S  L  L  T  L  R  F  V  *  F  S  I  *  V  K  F  Y  R  F  C  V  K  I  Q  T  M  F  V  *  F  W  I  *  N  A  K  M  E  L  G  R  G  R  G  L  F  L  E  L  V  K  V  *  L  D  *  S  A  S  E  F  R  W  S  N  M  V  S  D  D  S  Y  S  E  T  *  L  F  </first_frame>
            <second_frame>  C  F  G  T  K  Q  L  L  L  D  Q  *  P  Y  G  V  V  C  S  S  S  P  Q  L  F  Y  S  S  F  G  F  S  F  F  G  E  F  T  W  V  F  C  L  V  L  I  P  W  *  F  L  S  L  A  D  I  V  Q  F  F  L  C  G  V  P  L  I  G  P  Q  F  E  F  F  L  I  L  T  Y  I  S  I  N  S  Y  N  L  L  C  *  L  I  V  H  C  L  N  L  I  N  Y  V  *  F  S  G  *  V  D  V  N  G  E  K  I  I  F  P  *  Y  L  R  *  *  S  N  N  *  W  F  M  S  C  L  M  A  L  L  N  V  F  D  A  L  *  N  L  I  S  Q  *  *  Y  N  N  *  L  L  C  F  F  F  L  Y  *  R  C  D  L  Y  N  F  R  S  R  *  N  S  I  G  F  V  L  K  Y  K  Q  C  L  S  S  F  G  Y  E  M  L  R  W  N  *  E  G  E  E  V  Y  F  W  N  *  *  R  Y  D  W  I  N  Q  H  R  S  L  D  G  V  T  W  S  V  M  I  H  I  A  R  R  S  Y  L </second_frame>
            <third_frame>   V  S  E  P  N  N  S  Y  *  I  S  D  L  T  A  S  F  V  H  L  L  R  N  Y  S  I  L  H  S  D  S  V  S  L  E  N  L  L  G  F  F  A  *  C  *  F  P  G  N  S  S  P  L  P  I  *  F  N  F  F  Y  V  V  F  R  *  L  G  L  S  L  N  F  F  *  F  *  L  T  L  A  L  T  A  I  I  C  C  V  N  *  S  Y  I  V  *  I  S  L  I  M  C  N  L  V  G  K  L  M  L  T  G  K  R  L  Y  S  R  N  I  *  G  N  N  L  T  I  D  G  L  *  A  V  *  W  L  C  *  M  Y  L  M  L  C  R  I  *  S  L  S  N  N  I  T  I  D  F  C  V  F  F  F  F  I  D  V  A  I  C  I  I  F  D  L  G  E  I  L  *  V  L  C  *  N  T  N  N  V  C  L  V  L  D  M  K  C  *  D  G  I  R  K  G  K  R  F  I  F  G  I  S  E  G  M  I  G  L  I  S  I  G  V  *  M  E  *  H  G  Q  *  *  F  I  *  R  D  V  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21445" stop="21660"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFRNQTTPTRSVTLRRRLFIFSAIILFFIRIQFLWRIYLGFLLSVNSLVIPLPCRYSSIFFMWCSVDWASV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="22504" PGL_stop="23683"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22504" e_stop="23028"/>
            <exon e_start="23163" e_stop="23683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.989"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="22504" e_stop="23028" e_length="525"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23029" i_stop="23162" i_length="134"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="23163" e_stop="23683" e_length="521"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22504" stop="23028"/>
              <exon start="23163" stop="23683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323881" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGGAAAATGTAGCTTATTCTCCCAAAAATGTATTCATTCTATCTGGGCAAAGCAACATGGCTGGTCGTGGTGGAGTAGAAAAGCATCACTGGGATGGCGTTGTACCAAACGAGTGCCATCCAGATGCTTCTAGAATTTTCCGTCTTAGTGCACACCTCCATTATGAGGTGGCACGTGAGCCACTCCACCATGACATTGATGCGAAGAAGACATGTGGTGTTGGACCTGGAATGTCATTTGCAAATGCAATCAAGGACCGAGTGGAAGCTATTGGGTTAGTGCCATGTGCTGTAGGAGGAACTGCGATAAAGGAGTGGGCACACGGGCAACACTTGTATGTGAATATGATCAACAGAGCTAGAGCTGCCATGAGTCATGGAGGAGAAATCAAGGCATTGCTTTGGTATCAAGGAGAGAGTGATACATTATCTCAGCATTGCGTCGATACATATAAGGCTAATATGGAGAAGTTAATACATGATGTTCGTGCTGATTTGCATCTGCCATCTCTGCCAATTATTCAG : GTTGCAATTGCATCAGGAGATGAGAAGTATATTGAAAAGATTCGAGAAGCACAAAAGGCAATTGATCTTCCAAATGTTGTATGTGTTGATGCCATGGGATTGCAGCTAAAGGAAGATAATCTTCATTTAACTACAGAGGCTCAAGTTAAATTAGGCCAAATGTTGGCTGATGCATACCTTACCCATTTTGCACCACAAGAACCTTGTGTTGCTACATCTTGAGAAATTTGATGTATTATGTGTGTGTAAACTAAAAATTATTTAATCCTGGCTCATGAACATAACGTGAGTGGCTGAGTGCTCATATAAGTATGTTATTACTTTGAAGTAAGTTTACTCATTTTCTGTATCTCTTCATTTCTTTACTTTAAAATGAGTATTTCCTTGTCTGCATTTCTTCATTTAGCTTTCAAATATTTTCAATTGTACAATTATTGTGACATATAATACTTATATAGTTTTCAAATATGCAAATTTAATTTAAAAAAACTTTAAAGATAGCAAATTGGGCAACAACTTTG</gDNA_template>
            <first_frame> V  E  N  V  A  Y  S  P  K  N  V  F  I  L  S  G  Q  S  N  M  A  G  R  G  G  V  E  K  H  H  W  D  G  V  V  P  N  E  C  H  P  D  A  S  R  I  F  R  L  S  A  H  L  H  Y  E  V  A  R  E  P  L  H  H  D  I  D  A  K  K  T  C  G  V  G  P  G  M  S  F  A  N  A  I  K  D  R  V  E  A  I  G  L  V  P  C  A  V  G  G  T  A  I  K  E  W  A  H  G  Q  H  L  Y  V  N  M  I  N  R  A  R  A  A  M  S  H  G  G  E  I  K  A  L  L  W  Y  Q  G  E  S  D  T  L  S  Q  H  C  V  D  T  Y  K  A  N  M  E  K  L  I  H  D  V  R  A  D  L  H  L  P  S  L  P  I  I  Q  :  V  A  I  A  S  G  D  E  K  Y  I  E  K  I  R  E  A  Q  K  A  I  D  L  P  N  V  V  C  V  D  A  M  G  L  Q  L  K  E  D  N  L  H  L  T  T  E  A  Q  V  K  L  G  Q  M  L  A  D  A  Y  L  T  H  F  A  P  Q  E  P  C  V  A  T  S  *  E  I  *  C  I  M  C  V  *  T  K  N  Y  L  I  L  A  H  E  H  N  V  S  G  *  V  L  I  *  V  C  Y  Y  F  E  V  S  L  L  I  F  C  I  S  S  F  L  Y  F  K  M  S  I  S  L  S  A  F  L  H  L  A  F  K  Y  F  Q  L  Y  N  Y  C  D  I  *  Y  L  Y  S  F  Q  I  C  K  F  N  L  K  K  L  *  R  *  Q  I  G  Q  Q  L   </first_frame>
            <second_frame>  W  K  M  *  L  I  L  P  K  M  Y  S  F  Y  L  G  K  A  T  W  L  V  V  V  E  *  K  S  I  T  G  M  A  L  Y  Q  T  S  A  I  Q  M  L  L  E  F  S  V  L  V  H  T  S  I  M  R  W  H  V  S  H  S  T  M  T  L  M  R  R  R  H  V  V  L  D  L  E  C  H  L  Q  M  Q  S  R  T  E  W  K  L  L  G  *  C  H  V  L  *  E  E  L  R  *  R  S  G  H  T  G  N  T  C  M  *  I  *  S  T  E  L  E  L  P  *  V  M  E  E  K  S  R  H  C  F  G  I  K  E  R  V  I  H  Y  L  S  I  A  S  I  H  I  R  L  I  W  R  S  *  Y  M  M  F  V  L  I  C  I  C  H  L  C  Q  L  F  R :   L  Q  L  H  Q  E  M  R  S  I  L  K  R  F  E  K  H  K  R  Q  L  I  F  Q  M  L  Y  V  L  M  P  W  D  C  S  *  R  K  I  I  F  I  *  L  Q  R  L  K  L  N  *  A  K  C  W  L  M  H  T  L  P  I  L  H  H  K  N  L  V  L  L  H  L  E  K  F  D  V  L  C  V  C  K  L  K  I  I  *  S  W  L  M  N  I  T  *  V  A  E  C  S  Y  K  Y  V  I  T  L  K  *  V  Y  S  F  S  V  S  L  H  F  F  T  L  K  *  V  F  P  C  L  H  F  F  I  *  L  S  N  I  F  N  C  T  I  I  V  T  Y  N  T  Y  I  V  F  K  Y  A  N  L  I  *  K  N  F  K  D  S  K  L  G  N  N  F  </second_frame>
            <third_frame>   G  K  C  S  L  F  S  Q  K  C  I  H  S  I  W  A  K  Q  H  G  W  S  W  W  S  R  K  A  S  L  G  W  R  C  T  K  R  V  P  S  R  C  F  *  N  F  P  S  *  C  T  P  P  L  *  G  G  T  *  A  T  P  P  *  H  *  C  E  E  D  M  W  C  W  T  W  N  V  I  C  K  C  N  Q  G  P  S  G  S  Y  W  V  S  A  M  C  C  R  R  N  C  D  K  G  V  G  T  R  A  T  L  V  C  E  Y  D  Q  Q  S  *  S  C  H  E  S  W  R  R  N  Q  G  I  A  L  V  S  R  R  E  *  Y  I  I  S  A  L  R  R  Y  I  *  G  *  Y  G  E  V  N  T  *  C  S  C  *  F  A  S  A  I  S  A  N  Y  S   : G  C  N  C  I  R  R  *  E  V  Y  *  K  D  S  R  S  T  K  G  N  *  S  S  K  C  C  M  C  *  C  H  G  I  A  A  K  G  R  *  S  S  F  N  Y  R  G  S  S  *  I  R  P  N  V  G  *  C  I  P  Y  P  F  C  T  T  R  T  L  C  C  Y  I  L  R  N  L  M  Y  Y  V  C  V  N  *  K  L  F  N  P  G  S  *  T  *  R  E  W  L  S  A  H  I  S  M  L  L  L  *  S  K  F  T  H  F  L  Y  L  F  I  S  L  L  *  N  E  Y  F  L  V  C  I  S  S  F  S  F  Q  I  F  S  I  V  Q  L  L  *  H  I  I  L  I  *  F  S  N  M  Q  I  *  F  K  K  T  L  K  I  A  N  W  A  T  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22504" stop="23028"/>
                    <exon start="23163" stop="23384"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VENVAYSPKNVFILSGQSNMAGRGGVEKHHWDGVVPNECHPDASRIFRLSAHLHYEVAREPLHHDIDAKKTCGVGPGMSFANAIKDRVEAIGLVPCAVGGTAIKEWAHGQHLYVNMINRARAAMSHGGEIKALLWYQGESDTLSQHCVDTYKANMEKLIHDVRADLHLPSLPIIQVAIASGDEKYIEKIREAQKAIDLPNVVCVDAMGLQLKEDNLHLTTEAQVKLGQMLADAYLTHFAPQEPCVATS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="26304" PGL_stop="23876"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25953" e_stop="25874"/>
            <exon e_start="25671" e_stop="24684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.825" acc_prob="0.942" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="25953" e_stop="25874" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.825" acc_prob="0.942">
            <gDNA_intron_boundary i_start="25873" i_stop="25672" i_length="202"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25671" e_stop="24684" e_length="988"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25953" stop="25874"/>
              <exon start="25671" stop="25129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25198" stop="24684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCCATGTGGAATGCTTCTATATTCTCTTCTGAGGGAAAAACACCATGGGAAGATGTCAAAAGAGAGTATGTGAGAAAG : AGTATATTGTGGGATAATGATATCAAAAGTACAAAGCACACCCTGAAGGAAATGATTACACACTATTCTTCCCTTGGGAGCCCAGAGGGGCTGGCAGTAATTAAATCAGATACCTTTGCAGATGTAGCGTAAGTTTTTCTATCTGCTGCCGTTTACTTCCACCTGTGGTTACATGTGTTGGGATCAAATTTAGTTGCTGTTCAGTTAGTTTCCAAATTAAGTTGTTCATGTTCTGATAATGTATGACATCTGCTTCACCTCATCCCCTTGCTTCTTTTTTTACATAATTGCGTAGTCTGCTCATTCTAAAAGCTACTCAAAAGTTTGACTCAGTAAAAAGGAGGATTTATATTGTGAAAAGGTGCATGAGGTTCTTAATCTTCTCTTTCATCCTTGTACCATTATTCACTTTGAGATTTGTCCAGCATTGGCAGAGTCCATAAGTCCACAACCTTTACTATTATCATTGTTACAACTCTTCACAAATAAGCTGTCGATGGATATAACTAGCCAAGTAACTATGATTGGACTAATTACGTGTGAAATATGCTATATTTGAGAGGAGGTAACGAGAACAGGGAGAGAAGAACATTATTTCTCTCATTTGGCAAAAAAAGTTACTTATTGGAAGGAGTAACACCTTTTCCAACTCCTCTGTAAGTGGTCGAAGATGAGTTTGAGAGGGCATTTGGAAGATTTTATTCCCAAAGGTTTCTTCCTTGGACAGACAGCTACCTGTGAAGCAGTACTTATCCAAGATGATCTTCCCAATAAGAAGAGCATGAAGATTGTGGTTCTAATAGATAGTTCATGTGTGAATGGTATGAAAATTTTGCTAATCATCTTTCTTTGCTAAATGGGGTGGTGGAACATGTTCCTTTTCGTTTGGGATAGTGTATTACTGATGTCAGTGATGTGAGCATTTATTTGTATGGAGGGGTTATACTGTATGTACCACTGGTTAAGAATTTTGCACACTTCTCGCATG</gDNA_template>
            <first_frame> E  P  C  G  M  L  L  Y  S  L  L  R  E  K  H  H  G  K  M  S  K  E  S  M  *  E  R :   V  Y  C  G  I  M  I  S  K  V  Q  S  T  P  *  R  K  *  L  H  T  I  L  P  L  G  A  Q  R  G  W  Q  *  L  N  Q  I  P  L  Q  M  *  R  K  F  F  Y  L  L  P  F  T  S  T  C  G  Y  M  C  W  D  Q  I  *  L  L  F  S  *  F  P  N  *  V  V  H  V  L  I  M  Y  D  I  C  F  T  S  S  P  C  F  F  F  Y  I  I  A  *  S  A  H  S  K  S  Y  S  K  V  *  L  S  K  K  E  D  L  Y  C  E  K  V  H  E  V  L  N  L  L  F  H  P  C  T  I  I  H  F  E  I  C  P  A  L  A  E  S  I  S  P  Q  P  L  L  L  S  L  L  Q  L  F  T  N  K  L  S  M  D  I  T  S  Q  V  T  M  I  G  L  I  T  C  E  I  C  Y  I  *  E  E  V  T  R  T  G  R  E  E  H  Y  F  S  H  L  A  K  K  V  T  Y  W  K  E  *  H  L  F  Q  L  L  C  K  W  S  K  M  S  L  R  G  H  L  E  D  F  I  P  K  G  F  F  L  G  Q  T  A  T  C  E  A  V  L  I  Q  D  D  L  P  N  K  K  S  M  K  I  V  V  L  I  D  S  S  C  V  N  G  M  K  I  L  L  I  I  F  L  C  *  M  G  W  W  N  M  F  L  F  V  W  D  S  V  L  L  M  S  V  M  *  A  F  I  C  M  E  G  L  Y  C  M  Y  H  W  L  R  I  L  H  T  S  R  M </first_frame>
            <second_frame>  S  H  V  E  C  F  Y  I  L  F  *  G  K  N  T  M  G  R  C  Q  K  R  V  C  E  K   : E  Y  I  V  G  *  *  Y  Q  K  Y  K  A  H  P  E  G  N  D  Y  T  L  F  F  P  W  E  P  R  G  A  G  S  N  *  I  R  Y  L  C  R  C  S  V  S  F  S  I  C  C  R  L  L  P  P  V  V  T  C  V  G  I  K  F  S  C  C  S  V  S  F  Q  I  K  L  F  M  F  *  *  C  M  T  S  A  S  P  H  P  L  A  S  F  F  T  *  L  R  S  L  L  I  L  K  A  T  Q  K  F  D  S  V  K  R  R  I  Y  I  V  K  R  C  M  R  F  L  I  F  S  F  I  L  V  P  L  F  T  L  R  F  V  Q  H  W  Q  S  P  *  V  H  N  L  Y  Y  Y  H  C  Y  N  S  S  Q  I  S  C  R  W  I  *  L  A  K  *  L  *  L  D  *  L  R  V  K  Y  A  I  F  E  R  R  *  R  E  Q  G  E  K  N  I  I  S  L  I  W  Q  K  K  L  L  I  G  R  S  N  T  F  S  N  S  S  V  S  G  R  R  *  V  *  E  G  I  W  K  I  L  F  P  K  V  S  S  L  D  R  Q  L  P  V  K  Q  Y  L  S  K  M  I  F  P  I  R  R  A  *  R  L  W  F  *  *  I  V  H  V  *  M  V  *  K  F  C  *  S  S  F  F  A  K  W  G  G  G  T  C  S  F  S  F  G  I  V  Y  Y  *  C  Q  *  C  E  H  L  F  V  W  R  G  Y  T  V  C  T  T  G  *  E  F  C  T  L  L  A   </second_frame>
            <third_frame>   A  M  W  N  A  S  I  F  S  S  E  G  K  T  P  W  E  D  V  K  R  E  Y  V  R  K  :  S  I  L  W  D  N  D  I  K  S  T  K  H  T  L  K  E  M  I  T  H  Y  S  S  L  G  S  P  E  G  L  A  V  I  K  S  D  T  F  A  D  V  A  *  V  F  L  S  A  A  V  Y  F  H  L  W  L  H  V  L  G  S  N  L  V  A  V  Q  L  V  S  K  L  S  C  S  C  S  D  N  V  *  H  L  L  H  L  I  P  L  L  L  F  L  H  N  C  V  V  C  S  F  *  K  L  L  K  S  L  T  Q  *  K  G  G  F  I  L  *  K  G  A  *  G  S  *  S  S  L  S  S  L  Y  H  Y  S  L  *  D  L  S  S  I  G  R  V  H  K  S  T  T  F  T  I  I  I  V  T  T  L  H  K  *  A  V  D  G  Y  N  *  P  S  N  Y  D  W  T  N  Y  V  *  N  M  L  Y  L  R  G  G  N  E  N  R  E  R  R  T  L  F  L  S  F  G  K  K  S  Y  L  L  E  G  V  T  P  F  P  T  P  L  *  V  V  E  D  E  F  E  R  A  F  G  R  F  Y  S  Q  R  F  L  P  W  T  D  S  Y  L  *  S  S  T  Y  P  R  *  S  S  Q  *  E  E  H  E  D  C  G  S  N  R  *  F  M  C  E  W  Y  E  N  F  A  N  H  L  S  L  L  N  G  V  V  E  H  V  P  F  R  L  G  *  C  I  T  D  V  S  D  V  S  I  Y  L  Y  G  G  V  I  L  Y  V  P  L  V  K  N  F  A  H  F  S  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25343" stop="25113"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSKKEDLYCEKVHEVLNLLFHPCTIIHFEICPALAESISPQPLLLSLLQLFTNKLSMDITSQVTMIGLITCEICYI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25034" stop="24816"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLFQLLCKWSKMSLRGHLEDFIPKGFFLGQTATCEAVLIQDDLPNKKSMKIVVLIDSSCVNGMKILLIIFLC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25951" stop="25874"/>
                    <exon start="25671" stop="25540"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMWNASIFSSEGKTPWEDVKREYVRKSILWDNDIKSTKHTLKEMITHYSSLGSPEGLAVIKSDTFADVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26304" e_stop="25874"/>
            <exon e_start="25671" e_stop="25544"/>
            <exon e_start="24388" e_stop="23876"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.825" acc_prob="0.942" e_score="0.993"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="0.992"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="26304" e_stop="25874" e_length="431"/>
          </exon>
          <intron i_serial="1" don_prob="0.825" acc_prob="0.942">
            <gDNA_intron_boundary i_start="25873" i_stop="25672" i_length="202"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="25671" e_stop="25544" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="25543" i_stop="24389" i_length="1155"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="24388" e_stop="23876" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26304" stop="25874"/>
              <exon start="25671" stop="25544"/>
              <exon start="24388" stop="23876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324163" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGAGCCGTCACACCAGTTTCGGATCCTCCAAAAATGTGTTATATTTGAAGGAGATCTGACTTGGGGTGAGGTGATATTTTTAAAGGATCTGGGCAACATAGCCTCCAATTCAGAAGTTATAATCTGAGAGATGCTGTTGCCTCAGAAATACAAAATTAATCTTTGTAGGCATGCTTCCTTGTGACACATCAAATAATGAACAATCTGTATGAGAAAAGCATTTTTCATATATAGTTGATGATGGTTTTTCTATCTGTTTTTATGAATATCTACAGGTTGTTTCTGCTTATGTTTTGCAACATGTAACAACTTTATCTTATAGGTGCTTCATCTGTGATGGTTGCAAGAGGAGCCATGTGGAATGCTTCTATATTCTCTTCTGAGGGAAAAACACCATGGGAAGATGTCAAAAGAGAGTATGTGAGAAAG : AGTATATTGTGGGATAATGATATCAAAAGTACAAAGCACACCCTGAAGGAAATGATTACACACTATTCTTCCCTTGGGAGCCCAGAGGGGCTGGCAGTAATTAAATCAGATACCTTTGCAGATGTAGC : GAAACTTTATGGAGAAGAGGAATACTATGAATATGTCTCAGAAAGCCGGAGGAAGCAGCAGATGAAATAAGATAAGTAGTTCACCCTCACTAATCATACAAGTCAATACACCAAGGTGTCGATTAAATTGGACTACCGTTATAATTTATAAAGCAAGAGATAGAGGTGGACTTTGCACATGAGGTTGTTAATGAGTTCTGACTTCCTTCCCGTGACGCGACTATACCCAACTGCTATCCCTTGTTTGAGTTTGAAGTAACATTCCACAACCGCTGAACGAATCCATCAGTTTGAACAATATTCATTGTAGGCTGTACACTAAATTGAACTTAGTGGGTTTACCTAACCTGCATAAACCAACACGATAGCTATGTATCCGTTGGATCATAAGGGGGTACAATTGAAGTTTTTGCTTTATTCATGCTGCAGACATCATTTGCAAATTTAATATATTTATGTTTAGTGATATGACTGAAATCATGTACAACTAAACAAATTTGAAGTTAGTATAAA</gDNA_template>
            <first_frame> E  E  P  S  H  Q  F  R  I  L  Q  K  C  V  I  F  E  G  D  L  T  W  G  E  V  I  F  L  K  D  L  G  N  I  A  S  N  S  E  V  I  I  *  E  M  L  L  P  Q  K  Y  K  I  N  L  C  R  H  A  S  L  *  H  I  K  *  *  T  I  C  M  R  K  A  F  F  I  Y  S  *  *  W  F  F  Y  L  F  L  *  I  S  T  G  C  F  C  L  C  F  A  T  C  N  N  F  I  L  *  V  L  H  L  *  W  L  Q  E  E  P  C  G  M  L  L  Y  S  L  L  R  E  K  H  H  G  K  M  S  K  E  S  M  *  E  R :   V  Y  C  G  I  M  I  S  K  V  Q  S  T  P  *  R  K  *  L  H  T  I  L  P  L  G  A  Q  R  G  W  Q  *  L  N  Q  I  P  L  Q  M  *   : R  N  F  M  E  K  R  N  T  M  N  M  S  Q  K  A  G  G  S  S  R  *  N  K  I  S  S  S  P  S  L  I  I  Q  V  N  T  P  R  C  R  L  N  W  T  T  V  I  I  Y  K  A  R  D  R  G  G  L  C  T  *  G  C  *  *  V  L  T  S  F  P  *  R  D  Y  T  Q  L  L  S  L  V  *  V  *  S  N  I  P  Q  P  L  N  E  S  I  S  L  N  N  I  H  C  R  L  Y  T  K  L  N  L  V  G  L  P  N  L  H  K  P  T  R  *  L  C  I  R  W  I  I  R  G  Y  N  *  S  F  C  F  I  H  A  A  D  I  I  C  K  F  N  I  F  M  F  S  D  M  T  E  I  M  Y  N  *  T  N  L  K  L  V  *  </first_frame>
            <second_frame>  K  S  R  H  T  S  F  G  S  S  K  N  V  L  Y  L  K  E  I  *  L  G  V  R  *  Y  F  *  R  I  W  A  T  *  P  P  I  Q  K  L  *  S  E  R  C  C  C  L  R  N  T  K  L  I  F  V  G  M  L  P  C  D  T  S  N  N  E  Q  S  V  *  E  K  H  F  S  Y  I  V  D  D  G  F  S  I  C  F  Y  E  Y  L  Q  V  V  S  A  Y  V  L  Q  H  V  T  T  L  S  Y  R  C  F  I  C  D  G  C  K  R  S  H  V  E  C  F  Y  I  L  F  *  G  K  N  T  M  G  R  C  Q  K  R  V  C  E  K   : E  Y  I  V  G  *  *  Y  Q  K  Y  K  A  H  P  E  G  N  D  Y  T  L  F  F  P  W  E  P  R  G  A  G  S  N  *  I  R  Y  L  C  R  C  S  :  E  T  L  W  R  R  G  I  L  *  I  C  L  R  K  P  E  E  A  A  D  E  I  R  *  V  V  H  P  H  *  S  Y  K  S  I  H  Q  G  V  D  *  I  G  L  P  L  *  F  I  K  Q  E  I  E  V  D  F  A  H  E  V  V  N  E  F  *  L  P  S  R  D  A  T  I  P  N  C  Y  P  L  F  E  F  E  V  T  F  H  N  R  *  T  N  P  S  V  *  T  I  F  I  V  G  C  T  L  N  *  T  *  W  V  Y  L  T  C  I  N  Q  H  D  S  Y  V  S  V  G  S  *  G  G  T  I  E  V  F  A  L  F  M  L  Q  T  S  F  A  N  L  I  Y  L  C  L  V  I  *  L  K  S  C  T  T  K  Q  I  *  S  *  Y  K </second_frame>
            <third_frame>   R  A  V  T  P  V  S  D  P  P  K  M  C  Y  I  *  R  R  S  D  L  G  *  G  D  I  F  K  G  S  G  Q  H  S  L  Q  F  R  S  Y  N  L  R  D  A  V  A  S  E  I  Q  N  *  S  L  *  A  C  F  L  V  T  H  Q  I  M  N  N  L  Y  E  K  S  I  F  H  I  *  L  M  M  V  F  L  S  V  F  M  N  I  Y  R  L  F  L  L  M  F  C  N  M  *  Q  L  Y  L  I  G  A  S  S  V  M  V  A  R  G  A  M  W  N  A  S  I  F  S  S  E  G  K  T  P  W  E  D  V  K  R  E  Y  V  R  K  :  S  I  L  W  D  N  D  I  K  S  T  K  H  T  L  K  E  M  I  T  H  Y  S  S  L  G  S  P  E  G  L  A  V  I  K  S  D  T  F  A  D  V  A :   K  L  Y  G  E  E  E  Y  Y  E  Y  V  S  E  S  R  R  K  Q  Q  M  K  *  D  K  *  F  T  L  T  N  H  T  S  Q  Y  T  K  V  S  I  K  L  D  Y  R  Y  N  L  *  S  K  R  *  R  W  T  L  H  M  R  L  L  M  S  S  D  F  L  P  V  T  R  L  Y  P  T  A  I  P  C  L  S  L  K  *  H  S  T  T  A  E  R  I  H  Q  F  E  Q  Y  S  L  *  A  V  H  *  I  E  L  S  G  F  T  *  P  A  *  T  N  T  I  A  M  Y  P  L  D  H  K  G  V  Q  L  K  F  L  L  Y  S  C  C  R  H  H  L  Q  I  *  Y  I  Y  V  *  *  Y  D  *  N  H  V  Q  L  N  K  F  E  V  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25996" stop="25874"/>
                    <exon start="25671" stop="25544"/>
                    <exon start="24388" stop="24319"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLYLIGASSVMVARGAMWNASIFSSEGKTPWEDVKREYVRKSILWDNDIKSTKHTLKEMITHYSSLGSPEGLAVIKSDTFADVAKLYGEEEYYEYVSESRRKQQMK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="32119" PGL_stop="26718"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32119" e_stop="32017"/>
            <exon e_start="31170" e_stop="31093"/>
            <exon e_start="30905" e_stop="30800"/>
            <exon e_start="27921" e_stop="27813"/>
            <exon e_start="27710" e_stop="27574"/>
            <exon e_start="26822" e_stop="26718"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.186" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32119" e_stop="32017" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="32016" i_stop="31171" i_length="846"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31170" e_stop="31093" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.953" acc_prob="0.997">
            <gDNA_intron_boundary i_start="31092" i_stop="30906" i_length="187"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30905" e_stop="30800" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.985">
            <gDNA_intron_boundary i_start="30799" i_stop="27922" i_length="2878"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27921" e_stop="27813" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.186">
            <gDNA_intron_boundary i_start="27812" i_stop="27711" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="27710" e_stop="27574" e_length="137"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27573" i_stop="26823" i_length="751"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26822" e_stop="26718" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32119" stop="32017"/>
              <exon start="31170" stop="31093"/>
              <exon start="30905" stop="30800"/>
              <exon start="27921" stop="27813"/>
              <exon start="27710" stop="27574"/>
              <exon start="26822" stop="26718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326229" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGACCCTTCCGCGGCGCCGCTCGTCAATTGCAACCACTCCGATACTCCGCCGTGGTTGGTCGCCGCCGGCTGGGAAAATTCTTCCTCTCTTTTCAAGTCAAG : GCATCGCACTAACTTATCTGCCTCGTCAGAATGATGGATTACAGAAACAAGCTAGTCTTGGCTCCAATGGTCCGAGTG : GGTACATTGCCGTTTAGGCTGCTTGCTGCCCAATATGGAGCTGACATAACCTATGGAGAGGAGATTATTGATCATAAGATCATCAAATGTGAGCGGCGAGTTAATG : GTGTAAGGATGTAGCAGCAGTTGACGTAAACATGGGATGCCCCAAGTCATTCTCTATTAGTGGAGGCATGGGTGCTGCACTGTTGAGCAAACCAGAGCTCATCCATGAT : ATTTTGACAACATTGCGAAGGAACTTGGATGTACCAATAACATGCAAAATTAGGTTATTAAAAGATCCGCAAGATACAGTGGAATTGGCACGACGAATTGAGATGACTGGTGTCTCTGCTCTTGCTGTCCATGGAAG : GAAAGTTCCAGATAGGCCAAGAGATCCTGCAAAGTGGAATGAGATTGCTGATGTTGCTGCCGCTCTCTCTATTCCAGTTATAGCAAATGGTGATGTTTTTGAATA</gDNA_template>
            <first_frame> R  T  L  P  R  R  R  S  S  I  A  T  T  P  I  L  R  R  G  W  S  P  P  A  G  K  I  L  P  L  F  S  S  Q   : G  I  A  L  T  Y  L  P  R  Q  N  D  G  L  Q  K  Q  A  S  L  G  S  N  G  P  S   : G  Y  I  A  V  *  A  A  C  C  P  I  W  S  *  H  N  L  W  R  G  D  Y  *  S  *  D  H  Q  M  *  A  A  S  *  W :   C  K  D  V  A  A  V  D  V  N  M  G  C  P  K  S  F  S  I  S  G  G  M  G  A  A  L  L  S  K  P  E  L  I  H  D  :  I  L  T  T  L  R  R  N  L  D  V  P  I  T  C  K  I  R  L  L  K  D  P  Q  D  T  V  E  L  A  R  R  I  E  M  T  G  V  S  A  L  A  V  H  G  R :   K  V  P  D  R  P  R  D  P  A  K  W  N  E  I  A  D  V  A  A  A  L  S  I  P  V  I  A  N  G  D  V  F  E   </first_frame>
            <second_frame>  G  P  F  R  G  A  A  R  Q  L  Q  P  L  R  Y  S  A  V  V  G  R  R  R  L  G  K  F  F  L  S  F  Q  V  K  :  A  S  H  *  L  I  C  L  V  R  M  M  D  Y  R  N  K  L  V  L  A  P  M  V  R  V  :  G  T  L  P  F  R  L  L  A  A  Q  Y  G  A  D  I  T  Y  G  E  E  I  I  D  H  K  I  I  K  C  E  R  R  V  N   : G  V  R  M  *  Q  Q  L  T  *  T  W  D  A  P  S  H  S  L  L  V  E  A  W  V  L  H  C  *  A  N  Q  S  S  S  M  I :   F  *  Q  H  C  E  G  T  W  M  Y  Q  *  H  A  K  L  G  Y  *  K  I  R  K  I  Q  W  N  W  H  D  E  L  R  *  L  V  S  L  L  L  L  S  M  E   : G  K  F  Q  I  G  Q  E  I  L  Q  S  G  M  R  L  L  M  L  L  P  L  S  L  F  Q  L  *  Q  M  V  M  F  L  N  </second_frame>
            <third_frame>   D  P  S  A  A  P  L  V  N  C  N  H  S  D  T  P  P  W  L  V  A  A  G  W  E  N  S  S  S  L  F  K  S  R :   H  R  T  N  L  S  A  S  S  E  *  W  I  T  E  T  S  *  S  W  L  Q  W  S  E  W :   V  H  C  R  L  G  C  L  L  P  N  M  E  L  T  *  P  M  E  R  R  L  L  I  I  R  S  S  N  V  S  G  E  L  M  :  V  *  G  C  S  S  S  *  R  K  H  G  M  P  Q  V  I  L  Y  *  W  R  H  G  C  C  T  V  E  Q  T  R  A  H  P  *   : Y  F  D  N  I  A  K  E  L  G  C  T  N  N  M  Q  N  *  V  I  K  R  S  A  R  Y  S  G  I  G  T  T  N  *  D  D  W  C  L  C  S  C  C  P  W  K  :  E  S  S  R  *  A  K  R  S  C  K  V  E  *  D  C  *  C  C  C  R  S  L  Y  S  S  Y  S  K  W  *  C  F  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30801" stop="30800"/>
                    <exon start="27921" stop="27813"/>
                    <exon start="27710" stop="27574"/>
                    <exon start="26822" stop="26720"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WCKDVAAVDVNMGCPKSFSISGGMGAALLSKPELIHDILTTLRRNLDVPITCKIRLLKDPQDTVELARRIEMTGVSALAVHGRKVPDRPRDPAKWNEIADVAAALSIPVIANGDVFE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32119" stop="32017"/>
                    <exon start="31170" stop="31093"/>
                    <exon start="30905" stop="30889"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTLPRRRSSIATTPILRRGWSPPAGKILPLFSSQGIALTYLPRQNDGLQKQASLGSNGPSGYIAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32100" e_stop="32017"/>
            <exon e_start="31170" e_stop="31093"/>
            <exon e_start="30905" e_stop="30800"/>
            <exon e_start="29666" e_stop="29583"/>
            <exon e_start="27921" e_stop="27813"/>
            <exon e_start="27710" e_stop="27643"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="0.976"/>
          <exon-intron don_prob="0.953" acc_prob="0.997" e_score="0.987"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.186" e_score="0.972"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="32100" e_stop="32017" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="32016" i_stop="31171" i_length="846"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="31170" e_stop="31093" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.953" acc_prob="0.997">
            <gDNA_intron_boundary i_start="31092" i_stop="30906" i_length="187"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30905" e_stop="30800" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30799" i_stop="29667" i_length="1133"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29666" e_stop="29583" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="29582" i_stop="27922" i_length="1661"/>
          </intron>
          <exon e_serial="5" e_score="0.972">
            <gDNA_exon_boundary e_start="27921" e_stop="27813" e_length="109"/>
          </exon>
          <intron i_serial="5" don_prob="0.968" acc_prob="0.186">
            <gDNA_intron_boundary i_start="27812" i_stop="27711" i_length="102"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27710" e_stop="27643" e_length="68"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32100" stop="32017"/>
              <exon start="31170" stop="31093"/>
              <exon start="30905" stop="30800"/>
              <exon start="29666" stop="29583"/>
              <exon start="27921" stop="27813"/>
              <exon start="27710" stop="27643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338317" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTCGTCAATTGCAACCACTCCGATACTCCGCCGTGGTTGGTCGCCGCCGGCTGGGAAAATTCTTCCTCTCTTTTCAAGTCAAG : GCATCGCACTAACTTATCTGCCTCGTCAGAATGATGGATTACAGAAACAAGCTAGTCTTGGCTCCAATGGTCCGAGTG : GGTACATTGCCGTTTAGGCTGCTTGCTGCCCAATATGGAGCTGACATAACCTATGGAGAGGAGATTATTGATCATAAGATCATCAAATGTGAGCGGCGAGTTAATG : AACGTGCCCCGAGGAGAGAAATCGAGTTGTATTTCAGATGGGCACTTCTGATGCCATGAGGGCTCTCAAAGCTGCTGAAATAGT : GTGTAAGGATGTAGCAGCAGTTGACGTAAACATGGGATGCCCCAAGTCATTCTCTATTAGTGGAGGCATGGGTGCTGCACTGTTGAGCAAACCAGAGCTCATCCATGAT : ATTTTGACAACATTGCGAAGGAACTTGGATGTACCAATAACATGCAAAATTAGGTTATTAAAAGATCC</gDNA_template>
            <first_frame> A  R  Q  L  Q  P  L  R  Y  S  A  V  V  G  R  R  R  L  G  K  F  F  L  S  F  Q  V  K  :  A  S  H  *  L  I  C  L  V  R  M  M  D  Y  R  N  K  L  V  L  A  P  M  V  R  V  :  G  T  L  P  F  R  L  L  A  A  Q  Y  G  A  D  I  T  Y  G  E  E  I  I  D  H  K  I  I  K  C  E  R  R  V  N   : E  R  A  P  R  R  E  I  E  L  Y  F  R  W  A  L  L  M  P  *  G  L  S  K  L  L  K  *   : C  V  R  M  *  Q  Q  L  T  *  T  W  D  A  P  S  H  S  L  L  V  E  A  W  V  L  H  C  *  A  N  Q  S  S  S  M  I :   F  *  Q  H  C  E  G  T  W  M  Y  Q  *  H  A  K  L  G  Y  *  K  I  </first_frame>
            <second_frame>  L  V  N  C  N  H  S  D  T  P  P  W  L  V  A  A  G  W  E  N  S  S  S  L  F  K  S  R :   H  R  T  N  L  S  A  S  S  E  *  W  I  T  E  T  S  *  S  W  L  Q  W  S  E  W :   V  H  C  R  L  G  C  L  L  P  N  M  E  L  T  *  P  M  E  R  R  L  L  I  I  R  S  S  N  V  S  G  E  L  M  :  N  V  P  R  G  E  K  S  S  C  I  S  D  G  H  F  *  C  H  E  G  S  Q  S  C  *  N  S  :  V  *  G  C  S  S  S  *  R  K  H  G  M  P  Q  V  I  L  Y  *  W  R  H  G  C  C  T  V  E  Q  T  R  A  H  P  *   : Y  F  D  N  I  A  K  E  L  G  C  T  N  N  M  Q  N  *  V  I  K  R  S </second_frame>
            <third_frame>   S  S  I  A  T  T  P  I  L  R  R  G  W  S  P  P  A  G  K  I  L  P  L  F  S  S  Q   : G  I  A  L  T  Y  L  P  R  Q  N  D  G  L  Q  K  Q  A  S  L  G  S  N  G  P  S   : G  Y  I  A  V  *  A  A  C  C  P  I  W  S  *  H  N  L  W  R  G  D  Y  *  S  *  D  H  Q  M  *  A  A  S  *  * :   T  C  P  E  E  R  N  R  V  V  F  Q  M  G  T  S  D  A  M  R  A  L  K  A  A  E  I  V :   C  K  D  V  A  A  V  D  V  N  M  G  C  P  K  S  F  S  I  S  G  G  M  G  A  A  L  L  S  K  P  E  L  I  H  D  :  I  L  T  T  L  R  R  N  L  D  V  P  I  T  C  K  I  R  L  L  K  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29665" stop="29583"/>
                    <exon start="27921" stop="27813"/>
                    <exon start="27710" stop="27645"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCPEERNRVVFQMGTSDAMRALKAAEIVCKDVAAVDVNMGCPKSFSISGGMGAALLSKPELIHDILTTLRRNLDVPITCKIRLLKD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31158" stop="31093"/>
                    <exon start="30905" stop="30800"/>
                    <exon start="29666" stop="29608"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LICLVRMMDYRNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKIIKCERRVNERAPRREIELYFRWALLMP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="38021" PGL_stop="40678"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38021" e_stop="38507"/>
            <exon e_start="40338" e_stop="40678"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38021" e_stop="38507" e_length="487"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.977">
            <gDNA_intron_boundary i_start="38508" i_stop="40337" i_length="1830"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="40338" e_stop="40678" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38021" stop="38507"/>
              <exon start="40338" stop="40678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327900" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAAATGTGATTGGAGGAAGTTCCAGTGAGGAGGCACTTCACCAGGTGCATGATGTCAAGGTGGATGAAGACCTTCCTGAAAGGGAGGACCTTATATTAGAAGAAGCACAATCTCTCGATAATTCAACTTCAGATGAACCTTTCGTTGGCCTGGAGTTTGAATCTGAAGCCGCAGCACATGCATTTTATAATGCATATGCAACAAGGGTGGGTTTTATCATCCGGGTTAGTAAGCTTTCGCGATCTAGGCGTGATGGCTCCGCCATTGGTCGAGCACTAGTTTGCAACAAGGAGGGTTTTAGAATGCCTGATAAGCGGGAAAAGATTGTGCGACAGAGAGCAGAAACAAGGGTTGGTTGCAGAGCAATGATATTAGTTAGAAAAATAAGCTCTGGGAAATGGGTTGTCACAAAATTTGTCAAGGAGCACTCTCATCCATTGTGCCCAGGCAAAGGTCGCAGGGACTTGATCTATGATCAATACCCG : AACGAGCATGACAAAATCCGGGAACTATCTCAACAACTGGCAGCTGAGAAAAAGCGATCTGCTACATATAAGAGGCATTTGGAAATGATTTTCGAGCACATTGAGGAGCACAATCAATCTCTGTCTAAGAAGATCCAAGATATTGTACACAATGTTAGGGAGTTGGAGTCCAGAGATGAACATCATCATAGATAGTTTTAGCTTAATATGCCTTTGTTGATATTAGTGTAGAACCTAAGTTCAGTAAAGATCATAATGATTACTGTCTTGACTTGCCTTTTTTTCCCTCTCCCTGTTATCCTTTTCATTTTCTTTGGGAAGAGTATGAAAAATTTAAAACC</gDNA_template>
            <first_frame> *  K  C  D  W  R  K  F  Q  *  G  G  T  S  P  G  A  *  C  Q  G  G  *  R  P  S  *  K  G  G  P  Y  I  R  R  S  T  I  S  R  *  F  N  F  R  *  T  F  R  W  P  G  V  *  I  *  S  R  S  T  C  I  L  *  C  I  C  N  K  G  G  F  Y  H  P  G  *  *  A  F  A  I  *  A  *  W  L  R  H  W  S  S  T  S  L  Q  Q  G  G  F  *  N  A  *  *  A  G  K  D  C  A  T  E  S  R  N  K  G  W  L  Q  S  N  D  I  S  *  K  N  K  L  W  E  M  G  C  H  K  I  C  Q  G  A  L  S  S  I  V  P  R  Q  R  S  Q  G  L  D  L  *  S  I  P   : E  R  A  *  Q  N  P  G  T  I  S  T  T  G  S  *  E  K  A  I  C  Y  I  *  E  A  F  G  N  D  F  R  A  H  *  G  A  Q  S  I  S  V  *  E  D  P  R  Y  C  T  Q  C  *  G  V  G  V  Q  R  *  T  S  S  *  I  V  L  A  *  Y  A  F  V  D  I  S  V  E  P  K  F  S  K  D  H  N  D  Y  C  L  D  L  P  F  F  P  S  P  C  Y  P  F  H  F  L  W  E  E  Y  E  K  F  K  T </first_frame>
            <second_frame>  E  N  V  I  G  G  S  S  S  E  E  A  L  H  Q  V  H  D  V  K  V  D  E  D  L  P  E  R  E  D  L  I  L  E  E  A  Q  S  L  D  N  S  T  S  D  E  P  F  V  G  L  E  F  E  S  E  A  A  A  H  A  F  Y  N  A  Y  A  T  R  V  G  F  I  I  R  V  S  K  L  S  R  S  R  R  D  G  S  A  I  G  R  A  L  V  C  N  K  E  G  F  R  M  P  D  K  R  E  K  I  V  R  Q  R  A  E  T  R  V  G  C  R  A  M  I  L  V  R  K  I  S  S  G  K  W  V  V  T  K  F  V  K  E  H  S  H  P  L  C  P  G  K  G  R  R  D  L  I  Y  D  Q  Y  P  :  N  E  H  D  K  I  R  E  L  S  Q  Q  L  A  A  E  K  K  R  S  A  T  Y  K  R  H  L  E  M  I  F  E  H  I  E  E  H  N  Q  S  L  S  K  K  I  Q  D  I  V  H  N  V  R  E  L  E  S  R  D  E  H  H  H  R  *  F  *  L  N  M  P  L  L  I  L  V  *  N  L  S  S  V  K  I  I  M  I  T  V  L  T  C  L  F  F  P  L  P  V  I  L  F  I  F  F  G  K  S  M  K  N  L  K   </second_frame>
            <third_frame>   K  M  *  L  E  E  V  P  V  R  R  H  F  T  R  C  M  M  S  R  W  M  K  T  F  L  K  G  R  T  L  Y  *  K  K  H  N  L  S  I  I  Q  L  Q  M  N  L  S  L  A  W  S  L  N  L  K  P  Q  H  M  H  F  I  M  H  M  Q  Q  G  W  V  L  S  S  G  L  V  S  F  R  D  L  G  V  M  A  P  P  L  V  E  H  *  F  A  T  R  R  V  L  E  C  L  I  S  G  K  R  L  C  D  R  E  Q  K  Q  G  L  V  A  E  Q  *  Y  *  L  E  K  *  A  L  G  N  G  L  S  Q  N  L  S  R  S  T  L  I  H  C  A  Q  A  K  V  A  G  T  *  S  M  I  N  T  R :   T  S  M  T  K  S  G  N  Y  L  N  N  W  Q  L  R  K  S  D  L  L  H  I  R  G  I  W  K  *  F  S  S  T  L  R  S  T  I  N  L  C  L  R  R  S  K  I  L  Y  T  M  L  G  S  W  S  P  E  M  N  I  I  I  D  S  F  S  L  I  C  L  C  *  Y  *  C  R  T  *  V  Q  *  R  S  *  *  L  L  S  *  L  A  F  F  S  L  S  L  L  S  F  S  F  S  L  G  R  V  *  K  I  *  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38022" stop="38507"/>
                    <exon start="40338" stop="40532"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENVIGGSSSEEALHQVHDVKVDEDLPEREDLILEEAQSLDNSTSDEPFVGLEFESEAAAHAFYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKREKIVRQRAETRVGCRAMILVRKISSGKWVVTKFVKEHSHPLCPGKGRRDLIYDQYPNEHDKIRELSQQLAAEKKRSATYKRHLEMIFEHIEEHNQSLSKKIQDIVHNVRELESRDEHHHR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="48756" PGL_stop="52030"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48756" e_stop="49277"/>
            <exon e_start="50788" e_stop="51096"/>
            <exon e_start="51477" e_stop="52030"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.935" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48756" e_stop="49277" e_length="522"/>
          </exon>
          <intron i_serial="1" don_prob="0.935" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49278" i_stop="50787" i_length="1510"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50788" e_stop="51096" e_length="309"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380"/>
          </intron>
          <exon e_serial="3" e_score="0.968">
            <gDNA_exon_boundary e_start="51477" e_stop="52030" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48756" stop="49277"/>
              <exon start="50788" stop="51096"/>
              <exon start="51477" stop="52030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313843" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCCACTCATTTCATTGTCTATATTCTTCTTCTTTTCTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAA : GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAATCAGTAAAAAACCAACTGCAGCCACAACCACCTCAGCAGAATTCCCAACAAGTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG : AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTACATTTCGCCTCCTTGGTAGAATTGCATCAATTTCTTCTTCTTATAGCAATTTTATAAACATATTGATGCATTCTTGGACATGCTATGCATATTGCTACATAGTAAAATCTGGTTTT</gDNA_template>
            <first_frame> S  S  T  H  F  I  V  Y  I  L  L  L  F  Y  F  L  L  P  F  F  P  L  Q  T  L  H  F  S  V  F  D  *  K  F  S  F  L  V  F  W  T  K  S  P  A  L  G  F  L  D  F  C  R  V  F  L  F  C  L  T  D  P  F  G  G  I  F  E  S  *  K  V  L  S  S  L  H  K  K  L  Q  D  T  I  F  S  I  F  L  V  *  N  S  N  G  Y  V  L  N  *  C  *  E  A  K  S  *  V  I  K  D  K  K  M  K  I  Q  C  D  V  C  E  K  A  Q  A  T  V  I  C  C  A  D  E  A  A  L  C  A  K  C  D  I  E  V  H  A  A  N  K  L  A  S  K  H  Q  R  L  H  L  Q  C  L  S  N  K  L  P  P  C  D  I  C  Q  :  D  K  A  A  F  I  F  C  V  E  D  R  A  L  F  C  K  D  C  D  E  A  I  H  S  A  S  S  L  A  K  N  H  Q  R  F  L  A  T  G  I  R  V  A  L  S  S  S  C  N  K  E  S  V  K  N  Q  L  Q  P  Q  P  P  Q  Q  N  S  Q  Q  V  G  L  K  M  P  P  Q  Q  L  S  C  I  T  S  P  S  W  P  V  D  D  L  L  G  F  P  D  Y  E  S  S  D  K  :  K  D  L  L  E  L  G  E  F  E  W  L  G  G  I  D  L  F  G  E  Q  T  A  A  E  V  P  E  L  S  V  P  Q  S  S  N  T  N  I  Y  R  T  T  K  Y  Q  M  P  Y  K  K  S  R  I  E  I  P  D  D  D  E  Y  F  T  V  P  D  L  G  *  T  P  T  S  R  S  F  Q  L  N  V  H  V  C  L  C  V  V  L  N  Q  C  S  H  T  V  N  R  Y  V  Q  *  V  E  K  V  L  F  C  L  R  Y  S  L  S  C  L  L  S  Q  C  A  H  I  V  N  R  H  V  Q  *  V  E  E  T  L  F  C  L  R  Y  P  L  S  C  L  H  F  A  S  L  V  E  L  H  Q  F  L  L  L  I  A  I  L  *  T  Y  *  C  I  L  G  H  A  M  H  I  A  T  *  *  N  L  V   </first_frame>
            <second_frame>  L  P  L  I  S  L  S  I  F  F  F  F  S  T  F  S  S  H  F  S  H  Y  K  H  Y  I  F  L  F  L  I  E  S  F  H  F  *  Y  F  G  L  N  H  L  L  W  V  F  L  I  F  A  G  F  F  F  F  V  *  L  T  L  L  G  V  F  S  N  L  E  K  F  *  V  L  F  I  K  S  F  K  T  L  F  F  Q  F  F  L  C  E  T  Q  M  G  M  S  *  I  S  V  R  R  Q  R  V  K  *  *  K  I  K  R  *  R  Y  S  V  M  C  V  R  K  L  K  L  L  *  F  A  V  L  M  R  L  L  C  V  Q  N  V  I  L  K  F  M  L  L  I  N  *  Q  A  S  T  K  G  F  I  F  S  A  Y  L  T  S  F  L  L  V  I  F  A  K :   I  K  Q  P  S  S  S  V  L  R  I  E  L  S  F  A  R  T  V  T  K  Q  F  I  Q  P  A  A  S  L  R  T  T  N  A  S  *  P  L  E  S  V  *  P  *  A  Q  A  V  I  R  N  Q  *  K  T  N  C  S  H  N  H  L  S  R  I  P  N  K  L  A  *  K  C  L  H  S  S  C  P  V  *  H  H  H  L  G  L  S  M  I  Y  *  D  F  Q  I  M  S  R  V  T  R :   R  I  Y  L  S  L  V  N  L  S  G  *  G  A  L  I  S  L  V  N  K  Q  Q  L  K  C  P  S  Y  Q  Y  L  S  R  A  I  Q  I  F  T  G  Q  P  N  I  K  C  L  T  R  S  P  E  L  K  S  Q  M  M  M  S  I  L  L  S  P  I  L  V  E  L  Q  L  Q  E  V  S  N  *  M  C  M  C  A  C  V  *  Y  L  I  S  A  L  I  L  S  T  D  M  F  S  K  *  K  K  Y  C  S  A  *  D  T  P  Y  L  A  Y  F  R  S  A  L  I  L  S  T  D  M  F  S  K  *  R  K  H  Y  S  A  *  D  I  L  Y  L  A  Y  I  S  P  P  W  *  N  C  I  N  F  F  F  L  *  Q  F  Y  K  H  I  D  A  F  L  D  M  L  C  I  L  L  H  S  K  I  W  F  </second_frame>
            <third_frame>   F  H  S  F  H  C  L  Y  S  S  S  F  L  L  S  P  P  I  F  P  I  T  N  T  T  F  F  C  F  *  L  K  V  F  I  F  S  I  L  D  *  I  T  C  F  G  F  S  *  F  L  Q  G  F  S  F  L  S  D  *  P  F  W  G  Y  F  R  I  L  K  S  S  E  F  S  S  *  K  A  S  R  H  Y  F  F  N  F  S  C  V  K  L  K  W  V  C  L  E  L  V  L  G  G  K  E  L  S  N  K  R  *  K  D  E  D  T  V  *  C  V  *  E  S  S  S  Y  C  D  L  L  C  *  *  G  C  S  V  C  K  M  *  Y  *  S  S  C  C  *  *  I  S  K  Q  A  P  K  A  S  S  S  V  P  I  *  Q  A  S  S  L  *  Y  L  P   : R  *  S  S  L  H  L  L  C  *  G  *  S  S  L  L  Q  G  L  *  R  S  N  S  F  S  Q  Q  P  R  *  E  P  P  T  L  L  S  H  W  N  P  C  S  L  E  L  K  L  *  *  G  I  S  K  K  P  T  A  A  T  T  T  S  A  E  F  P  T  S  W  L  E  N  A  S  T  A  V  V  L  Y  N  I  T  I  L  A  C  R  *  F  T  R  I  S  R  L  *  V  E  *  Q   : E  G  S  T  *  A  W  *  I  *  V  V  R  G  H  *  S  L  W  *  T  N  S  S  *  S  A  R  A  I  S  T  S  V  E  Q  Y  K  Y  L  Q  D  N  Q  I  S  N  A  L  Q  E  V  Q  N  *  N  P  R  *  *  *  V  F  Y  C  P  R  S  W  L  N  S  N  F  K  K  F  P  I  K  C  A  C  V  L  V  C  S  T  *  S  V  L  S  Y  C  Q  Q  I  C  S  V  S  R  K  S  I  V  L  L  K  I  L  L  I  L  L  T  F  A  V  R  S  Y  C  Q  Q  T  C  S  V  S  R  G  N  T  I  L  L  K  I  S  F  I  L  L  T  F  R  L  L  G  R  I  A  S  I  S  S  S  Y  S  N  F  I  N  I  L  M  H  S  W  T  C  Y  A  Y  C  Y  I  V  K  S  G  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49077" stop="49277"/>
                    <exon start="50788" stop="51096"/>
                    <exon start="51477" stop="51686"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIKDKKMKIQCDVCEKAQATVICCADEAALCAKCDIEVHAANKLASKHQRLHLQCLSNKLPPCDICQDKAAFIFCVEDRALFCKDCDEAIHSASSLAKNHQRFLATGIRVALSSSCNKESVKNQLQPQPPQQNSQQVGLKMPPQQLSCITSPSWPVDDLLGFPDYESSDKKDLLELGEFEWLGGIDLFGEQTAAEVPELSVPQSSNTNIYRTTKYQMPYKKSRIEIPDDDEYFTVPDLG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51746" stop="52030"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVLSYCQQICSVSRKSIVLLKILLILLTFAVRSYCQQTCSVSRGNTILLKISFILLTFRLLGRIASISSSYSNFINILMHSWTCYAYCYIVKSGF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="51121" e_stop="51808"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="51121" e_stop="51808" e_length="688"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51121" stop="51808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334623" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGCAAGTATCCTATATTTTCTACCACTTGGGTTGGTGGCTGGCGGATTGACGTATAGAGGACTTCTCTAGATGAGAAGCTATCGATTTTCTTGGTAATGCAGCTTATGCATAGCATTGAACTTGAATTTGAAACACTCAAATATGCAAAACGACTTCCTTAGATTCCTCGATACATAGGGAGACATTTTATGACACCATTACATGTATATACGAAGTTGGCCTTGGGTATATTCCGGTGTCAGTCTAATATGTGAAACTGTGGTGACCATTGATTCAGTATATTACGGTGTCATTGTCTGTTCATCTAATATGTAATGAATAACCTATATATTGGTTGTTTCAATCTAATACAGAAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAG</gDNA_template>
            <first_frame> F  A  S  I  L  Y  F  L  P  L  G  L  V  A  G  G  L  T  Y  R  G  L  L  *  M  R  S  Y  R  F  S  W  *  C  S  L  C  I  A  L  N  L  N  L  K  H  S  N  M  Q  N  D  F  L  R  F  L  D  T  *  G  D  I  L  *  H  H  Y  M  Y  I  R  S  W  P  W  V  Y  S  G  V  S  L  I  C  E  T  V  V  T  I  D  S  V  Y  Y  G  V  I  V  C  S  S  N  M  *  *  I  T  Y  I  L  V  V  S  I  *  Y  R  R  I  Y  L  S  L  V  N  L  S  G  *  G  A  L  I  S  L  V  N  K  Q  Q  L  K  C  P  S  Y  Q  Y  L  S  R  A  I  Q  I  F  T  G  Q  P  N  I  K  C  L  T  R  S  P  E  L  K  S  Q  M  M  M  S  I  L  L  S  P  I  L  V  E  L  Q  L  Q  E  V  S  N  *  M  C  M  C  A  C  V  *  Y  L  I  S  A  L  I  L  S  T  D  M  F  S  K  *  K  K  Y  C  S  A  *  </first_frame>
            <second_frame>  L  Q  V  S  Y  I  F  Y  H  L  G  W  W  L  A  D  *  R  I  E  D  F  S  R  *  E  A  I  D  F  L  G  N  A  A  Y  A  *  H  *  T  *  I  *  N  T  Q  I  C  K  T  T  S  L  D  S  S  I  H  R  E  T  F  Y  D  T  I  T  C  I  Y  E  V  G  L  G  Y  I  P  V  S  V  *  Y  V  K  L  W  *  P  L  I  Q  Y  I  T  V  S  L  S  V  H  L  I  C  N  E  *  P  I  Y  W  L  F  Q  S  N  T  E  G  S  T  *  A  W  *  I  *  V  V  R  G  H  *  S  L  W  *  T  N  S  S  *  S  A  R  A  I  S  T  S  V  E  Q  Y  K  Y  L  Q  D  N  Q  I  S  N  A  L  Q  E  V  Q  N  *  N  P  R  *  *  *  V  F  Y  C  P  R  S  W  L  N  S  N  F  K  K  F  P  I  K  C  A  C  V  L  V  C  S  T  *  S  V  L  S  Y  C  Q  Q  I  C  S  V  S  R  K  S  I  V  L  L  K </second_frame>
            <third_frame>   C  K  Y  P  I  F  S  T  T  W  V  G  G  W  R  I  D  V  *  R  T  S  L  D  E  K  L  S  I  F  L  V  M  Q  L  M  H  S  I  E  L  E  F  E  T  L  K  Y  A  K  R  L  P  *  I  P  R  Y  I  G  R  H  F  M  T  P  L  H  V  Y  T  K  L  A  L  G  I  F  R  C  Q  S  N  M  *  N  C  G  D  H  *  F  S  I  L  R  C  H  C  L  F  I  *  Y  V  M  N  N  L  Y  I  G  C  F  N  L  I  Q  K  D  L  L  E  L  G  E  F  E  W  L  G  G  I  D  L  F  G  E  Q  T  A  A  E  V  P  E  L  S  V  P  Q  S  S  N  T  N  I  Y  R  T  T  K  Y  Q  M  P  Y  K  K  S  R  I  E  I  P  D  D  D  E  Y  F  T  V  P  D  L  G  *  T  P  T  S  R  S  F  Q  L  N  V  H  V  C  L  C  V  V  L  N  Q  C  S  H  T  V  N  R  Y  V  Q  *  V  E  K  V  L  F  C  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51432" stop="51686"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVMNNLYIGCFNLIQKDLLELGEFEWLGGIDLFGEQTAAEVPELSVPQSSNTNIYRTTKYQMPYKKSRIEIPDDDEYFTVPDLG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51514" stop="51714"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GALISLVNKQQLKCPSYQYLSRAIQIFTGQPNIKCLTRSPELKSQMMMSILLSPILVELQLQEVSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="50841" e_stop="50913"/>
            <exon e_start="50995" e_stop="51096"/>
            <exon e_start="51477" e_stop="51808"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.980"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50841" e_stop="50913" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50914" i_stop="50994" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="50995" e_stop="51096" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51477" e_stop="51808" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50841" stop="50913"/>
              <exon start="50995" stop="51096"/>
              <exon start="51477" stop="51808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313842" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGT : GTTGGCTTGAAAATGCCTCCACAGCAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG : AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAG</gDNA_template>
            <first_frame> L  *  R  S  N  S  F  S  Q  Q  P  R  *  E  P  P  T  L  L  S  H  W  N  P   : C  W  L  E  N  A  S  T  A  V  V  L  Y  N  I  T  I  L  A  C  R  *  F  T  R  I  S  R  L  *  V  E  *  Q   : E  G  S  T  *  A  W  *  I  *  V  V  R  G  H  *  S  L  W  *  T  N  S  S  *  S  A  R  A  I  S  T  S  V  E  Q  Y  K  Y  L  Q  D  N  Q  I  S  N  A  L  Q  E  V  Q  N  *  N  P  R  *  *  *  V  F  Y  C  P  R  S  W  L  N  S  N  F  K  K  F  P  I  K  C  A  C  V  L  V  C  S  T  *  S  V  L  S  Y  C  Q  Q  I  C  S  V  S  R  K  S  I  V  L  L  K </first_frame>
            <second_frame>  C  D  E  A  I  H  S  A  S  S  L  A  K  N  H  Q  R  F  L  A  T  G  I  R  :  V  G  L  K  M  P  P  Q  Q  L  S  C  I  T  S  P  S  W  P  V  D  D  L  L  G  F  P  D  Y  E  S  S  D  K  :  K  D  L  L  E  L  G  E  F  E  W  L  G  G  I  D  L  F  G  E  Q  T  A  A  E  V  P  E  L  S  V  P  Q  S  S  N  T  N  I  Y  R  T  T  K  Y  Q  M  P  Y  K  K  S  R  I  E  I  P  D  D  D  E  Y  F  T  V  P  D  L  G  *  T  P  T  S  R  S  F  Q  L  N  V  H  V  C  L  C  V  V  L  N  Q  C  S  H  T  V  N  R  Y  V  Q  *  V  E  K  V  L  F  C  L   </second_frame>
            <third_frame>   V  T  K  Q  F  I  Q  P  A  A  S  L  R  T  T  N  A  S  *  P  L  E  S  V :   L  A  *  K  C  L  H  S  S  C  P  V  *  H  H  H  L  G  L  S  M  I  Y  *  D  F  Q  I  M  S  R  V  T  R :   R  I  Y  L  S  L  V  N  L  S  G  *  G  A  L  I  S  L  V  N  K  Q  Q  L  K  C  P  S  Y  Q  Y  L  S  R  A  I  Q  I  F  T  G  Q  P  N  I  K  C  L  T  R  S  P  E  L  K  S  Q  M  M  M  S  I  L  L  S  P  I  L  V  E  L  Q  L  Q  E  V  S  N  *  M  C  M  C  A  C  V  *  Y  L  I  S  A  L  I  L  S  T  D  M  F  S  K  *  K  K  Y  C  S  A  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50842" stop="50913"/>
                    <exon start="50995" stop="51096"/>
                    <exon start="51477" stop="51686"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CDEAIHSASSLAKNHQRFLATGIRVGLKMPPQQLSCITSPSWPVDDLLGFPDYESSDKKDLLELGEFEWLGGIDLFGEQTAAEVPELSVPQSSNTNIYRTTKYQMPYKKSRIEIPDDDEYFTVPDLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="50788" e_stop="50944"/>
            <exon e_start="51019" e_stop="51096"/>
            <exon e_start="51477" e_stop="51915"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50788" e_stop="50944" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50945" i_stop="51018" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51019" e_stop="51096" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51097" i_stop="51476" i_length="380"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="51477" e_stop="51915" e_length="439"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50788" stop="50944"/>
              <exon start="51019" stop="51096"/>
              <exon start="51477" stop="51915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334620" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAAAGCAGCCTTCATCTTCTGTGTTGAGGATAGAGCTCTCTTTTGCAAGGACTGTGACGAAGCAATTCATTCAGCCAGCAGCCTCGCTAAGAACCACCAACGCTTCTTAGCCACTGGAATCCGTGTAGCCTTGAGCTCAAGCTGTAATAAGGAAT : CAGTTGTCCTGTATAACATCACCATCTTGGCCTGTCGATGATTTACTAGGATTTCCAGATTATGAGTCGAGTGACAAG : AAGGATCTACTTGAGCTTGGTGAATTTGAGTGGTTAGGGGGCATTGATCTCTTTGGTGAACAAACAGCAGCTGAAGTGCCCGAGCTATCAGTACCTCAGTCGAGCAATACAAATATTTACAGGACAACCAAATATCAAATGCCTTACAAGAAGTCCAGAATTGAAATCCCAGATGATGATGAGTATTTTACTGTCCCCGATCTTGGTTGAACTCCAACTTCAAGAAGTTTCCAATTAAATGTGCATGTGTGCTTGTGTGTAGTACTTAATCAGTGCTCTCATACTGTCAACAGATATGTTCAGTAAGTAGAAAAAGTATTGTTCTGCTTAAGATACTCCTTATCTTGCTTACTTTCGCAGTGCGCTCATATTGTCAACAGACATGTTCAGTAAGTAGAGGAAACACTATTCTGCTTAAGATATCCTTTATCTTGCTTAC</gDNA_template>
            <first_frame> D  K  A  A  F  I  F  C  V  E  D  R  A  L  F  C  K  D  C  D  E  A  I  H  S  A  S  S  L  A  K  N  H  Q  R  F  L  A  T  G  I  R  V  A  L  S  S  S  C  N  K  E   : S  V  V  L  Y  N  I  T  I  L  A  C  R  *  F  T  R  I  S  R  L  *  V  E  *  Q   : E  G  S  T  *  A  W  *  I  *  V  V  R  G  H  *  S  L  W  *  T  N  S  S  *  S  A  R  A  I  S  T  S  V  E  Q  Y  K  Y  L  Q  D  N  Q  I  S  N  A  L  Q  E  V  Q  N  *  N  P  R  *  *  *  V  F  Y  C  P  R  S  W  L  N  S  N  F  K  K  F  P  I  K  C  A  C  V  L  V  C  S  T  *  S  V  L  S  Y  C  Q  Q  I  C  S  V  S  R  K  S  I  V  L  L  K  I  L  L  I  L  L  T  F  A  V  R  S  Y  C  Q  Q  T  C  S  V  S  R  G  N  T  I  L  L  K  I  S  F  I  L  L   </first_frame>
            <second_frame>  I  K  Q  P  S  S  S  V  L  R  I  E  L  S  F  A  R  T  V  T  K  Q  F  I  Q  P  A  A  S  L  R  T  T  N  A  S  *  P  L  E  S  V  *  P  *  A  Q  A  V  I  R  N  :  Q  L  S  C  I  T  S  P  S  W  P  V  D  D  L  L  G  F  P  D  Y  E  S  S  D  K  :  K  D  L  L  E  L  G  E  F  E  W  L  G  G  I  D  L  F  G  E  Q  T  A  A  E  V  P  E  L  S  V  P  Q  S  S  N  T  N  I  Y  R  T  T  K  Y  Q  M  P  Y  K  K  S  R  I  E  I  P  D  D  D  E  Y  F  T  V  P  D  L  G  *  T  P  T  S  R  S  F  Q  L  N  V  H  V  C  L  C  V  V  L  N  Q  C  S  H  T  V  N  R  Y  V  Q  *  V  E  K  V  L  F  C  L  R  Y  S  L  S  C  L  L  S  Q  C  A  H  I  V  N  R  H  V  Q  *  V  E  E  T  L  F  C  L  R  Y  P  L  S  C  L  </second_frame>
            <third_frame>   *  S  S  L  H  L  L  C  *  G  *  S  S  L  L  Q  G  L  *  R  S  N  S  F  S  Q  Q  P  R  *  E  P  P  T  L  L  S  H  W  N  P  C  S  L  E  L  K  L  *  *  G  I :   S  C  P  V  *  H  H  H  L  G  L  S  M  I  Y  *  D  F  Q  I  M  S  R  V  T  R :   R  I  Y  L  S  L  V  N  L  S  G  *  G  A  L  I  S  L  V  N  K  Q  Q  L  K  C  P  S  Y  Q  Y  L  S  R  A  I  Q  I  F  T  G  Q  P  N  I  K  C  L  T  R  S  P  E  L  K  S  Q  M  M  M  S  I  L  L  S  P  I  L  V  E  L  Q  L  Q  E  V  S  N  *  M  C  M  C  A  C  V  *  Y  L  I  S  A  L  I  L  S  T  D  M  F  S  K  *  K  K  Y  C  S  A  *  D  T  P  Y  L  A  Y  F  R  S  A  L  I  L  S  T  D  M  F  S  K  *  R  K  H  Y  S  A  *  D  I  L  Y  L  A  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50924" stop="50944"/>
                    <exon start="51019" stop="51096"/>
                    <exon start="51477" stop="51686"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQAVIRNQLSCITSPSWPVDDLLGFPDYESSDKKDLLELGEFEWLGGIDLFGEQTAAEVPELSVPQSSNTNIYRTTKYQMPYKKSRIEIPDDDEYFTVPDLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="48794" e_stop="49667"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="48794" e_stop="49667" e_length="874"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48794" stop="49667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334622" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACTTTCTCCTCCCATTTTTCCCATTACAAACACTACATTTTTCTGTTTTTGATTGAAAGTTTTCATTTTTAGTATTTTGGACTAAATCACCTGCTTTGGGTTTTCTTGATTTTTGCAGGGTTTTTCTTTTTTGTCTGACTGACCCTTTTGGGGGTATTTTCGAATCTTGAAAAGTTCTGAGTTCTCTTCATAAAAAGCTTCAAGACACTATTTTTTCAATTTTTCTTGTGTGAAACTCAAATGGGTATGTCTTGAATTAGTGTTAGGAGGCAAAGAGTTAAGTAATAAAAGATAAAAAGATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCAAGCTACTGTGATTTGCTGTGCTGATGAGGCTGCTCTGTGTGCAAAATGTGATATTGAAGTTCATGCTGCTAATAAATTAGCAAGCAAGCACCAAAGGCTTCATCTTCAGTGCCTATCTAACAAGCTTCCTCCTTGTGATATTTGCCAAGTAAGGGAACTTCTTCTTTTTGTTGCCCTGTTCATGGAATAATTTGTTTTTAGTCTAGATTGTGTTACTAATATTTCAATGTGGTAGTTGTGTTGCTCCTTGATTAATGGAAAGTTAACTTGTGTACCCTCCCACTGGTTTGGGCTTTGGACTTTCAACATGGAAGTCTGAAGTGCCTTCTGGGTCAATCTCAGTGCACCGGACTTGCCTAGTGCTAATTACATCTTCCATGTGGTTTGCAAGCTATTATATAGGAACGGGGTTTGCAAGCTGTTAAATAAGAGCGGGGTTAGCCCCTATGCGCACTCAAGGGCAGCGGCTGCGGGTTTCCTTGTCATAAAAAAAGTTGGAAAGTTAACTTGTGATGTTCCTTTTGATTAGACTCTGATT</gDNA_template>
            <first_frame> L  L  S  P  P  I  F  P  I  T  N  T  T  F  F  C  F  *  L  K  V  F  I  F  S  I  L  D  *  I  T  C  F  G  F  S  *  F  L  Q  G  F  S  F  L  S  D  *  P  F  W  G  Y  F  R  I  L  K  S  S  E  F  S  S  *  K  A  S  R  H  Y  F  F  N  F  S  C  V  K  L  K  W  V  C  L  E  L  V  L  G  G  K  E  L  S  N  K  R  *  K  D  E  D  T  V  *  C  V  *  E  S  S  S  Y  C  D  L  L  C  *  *  G  C  S  V  C  K  M  *  Y  *  S  S  C  C  *  *  I  S  K  Q  A  P  K  A  S  S  S  V  P  I  *  Q  A  S  S  L  *  Y  L  P  S  K  G  T  S  S  F  C  C  P  V  H  G  I  I  C  F  *  S  R  L  C  Y  *  Y  F  N  V  V  V  V  L  L  L  D  *  W  K  V  N  L  C  T  L  P  L  V  W  A  L  D  F  Q  H  G  S  L  K  C  L  L  G  Q  S  Q  C  T  G  L  A  *  C  *  L  H  L  P  C  G  L  Q  A  I  I  *  E  R  G  L  Q  A  V  K  *  E  R  G  *  P  L  C  A  L  K  G  S  G  C  G  F  P  C  H  K  K  S  W  K  V  N  L  *  C  S  F  *  L  D  S  D  </first_frame>
            <second_frame>  Y  F  L  L  P  F  F  P  L  Q  T  L  H  F  S  V  F  D  *  K  F  S  F  L  V  F  W  T  K  S  P  A  L  G  F  L  D  F  C  R  V  F  L  F  C  L  T  D  P  F  G  G  I  F  E  S  *  K  V  L  S  S  L  H  K  K  L  Q  D  T  I  F  S  I  F  L  V  *  N  S  N  G  Y  V  L  N  *  C  *  E  A  K  S  *  V  I  K  D  K  K  M  K  I  Q  C  D  V  C  E  K  A  Q  A  T  V  I  C  C  A  D  E  A  A  L  C  A  K  C  D  I  E  V  H  A  A  N  K  L  A  S  K  H  Q  R  L  H  L  Q  C  L  S  N  K  L  P  P  C  D  I  C  Q  V  R  E  L  L  L  F  V  A  L  F  M  E  *  F  V  F  S  L  D  C  V  T  N  I  S  M  W  *  L  C  C  S  L  I  N  G  K  L  T  C  V  P  S  H  W  F  G  L  W  T  F  N  M  E  V  *  S  A  F  W  V  N  L  S  A  P  D  L  P  S  A  N  Y  I  F  H  V  V  C  K  L  L  Y  R  N  G  V  C  K  L  L  N  K  S  G  V  S  P  Y  A  H  S  R  A  A  A  A  G  F  L  V  I  K  K  V  G  K  L  T  C  D  V  P  F  D  *  T  L  I </second_frame>
            <third_frame>   T  F  S  S  H  F  S  H  Y  K  H  Y  I  F  L  F  L  I  E  S  F  H  F  *  Y  F  G  L  N  H  L  L  W  V  F  L  I  F  A  G  F  F  F  F  V  *  L  T  L  L  G  V  F  S  N  L  E  K  F  *  V  L  F  I  K  S  F  K  T  L  F  F  Q  F  F  L  C  E  T  Q  M  G  M  S  *  I  S  V  R  R  Q  R  V  K  *  *  K  I  K  R  *  R  Y  S  V  M  C  V  R  K  L  K  L  L  *  F  A  V  L  M  R  L  L  C  V  Q  N  V  I  L  K  F  M  L  L  I  N  *  Q  A  S  T  K  G  F  I  F  S  A  Y  L  T  S  F  L  L  V  I  F  A  K  *  G  N  F  F  F  L  L  P  C  S  W  N  N  L  F  L  V  *  I  V  L  L  I  F  Q  C  G  S  C  V  A  P  *  L  M  E  S  *  L  V  Y  P  P  T  G  L  G  F  G  L  S  T  W  K  S  E  V  P  S  G  S  I  S  V  H  R  T  C  L  V  L  I  T  S  S  M  W  F  A  S  Y  Y  I  G  T  G  F  A  S  C  *  I  R  A  G  L  A  P  M  R  T  Q  G  Q  R  L  R  V  S  L  S  *  K  K  L  E  S  *  L  V  M  F  L  L  I  R  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49077" stop="49319"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIKDKKMKIQCDVCEKAQATVICCADEAALCAKCDIEVHAANKLASKHQRLHLQCLSNKLPPCDICQVRELLLFVALFME*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49449" stop="49658"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAFWVNLSAPDLPSANYIFHVVCKLLYRNGVCKLLNKSGVSPYAHSRAAAAGFLVIKKVGKLTCDVPFD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="54985" PGL_stop="52274"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54985" e_stop="54464"/>
            <exon e_start="53536" e_stop="53204"/>
            <exon e_start="52900" e_stop="52784"/>
            <exon e_start="52699" e_stop="52274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54985" e_stop="54464" e_length="522"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.976">
            <gDNA_intron_boundary i_start="54463" i_stop="53537" i_length="927"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53536" e_stop="53204" e_length="333"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="53203" i_stop="52901" i_length="303"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52900" e_stop="52784" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="52783" i_stop="52700" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="0.967">
            <gDNA_exon_boundary e_start="52699" e_stop="52274" e_length="426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54985" stop="54464"/>
              <exon start="53536" stop="53204"/>
              <exon start="52900" stop="52784"/>
              <exon start="52699" stop="52274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313491" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTATATAAAGCTCCTTATAATTTTCACTTATCCTCCTCTTCTTCTCTCTGTTATACTATATAAAAATCTATAGATACACCTATAGATACATATATTTTCTCTATTCATCGTAGCCATGGCAGTTAACGGTGCTTCTTCTTCTGGTTTGATCGTCAGTTTCGGTGAGATGTTGATCGATTTCGTTCCGACAGTCTCCGGCGTATCCCTTGCCGAGGCTCCCGGATTTTTGAAAGCTCCCGGCGGTGCACCGGCGAACGTCGCTATCGCGGTGACGAGGCTCGGAGGGAAGTCGGCGTTCGTCGGGAAACTCGGCGACGATGAGTTCGGTCACATGCTCGCCGGGATTCTGAAAACGAACGGCGTACAAGCCGAAGGAATTAATTTTGACAAGGGCGCCAGGACGGCTTTGGCGTTCGTGACGCTACGCGCCGACGGAGAGCGTGAGTTTATGTTTTACAGAAATCCCAGTGCCGATATGTTGCTCACGCCCGCTGAGTTGAATCTTGATCTTATTAGATCT : GCTAAGGTGTTCCACTATGGATCAATTAGTTTGATCGTGGAGCCATGTAGAGCAGCACATATGAAGGCAATGGAAGTAGCAAAGGAGGCAGGGGCATTGCTCTCTTATGACCCAAACCTTCGTTTGCCGTTGTGGCCTTCAGCAGAAGAGGCCAAGAAGCAAATCAAGAGCATATGGGACTCTGCTGATGTGATCAAGGTCAGCGATGTGGAGCTCGAATTCCTCACTGGAAGCAACAAGATTGATGATGAATCCGCCATGTCCTTGTGGCATCCTAACTTGAAGCTACTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTACTACACCAAG : AAATTCCATGGAACCGTTGGAGGATTCCATGTGAAGACTGTTGACACCACTGGAGCTGGTGATTCTTTTGTTGGTGCCCTTCTAACCAAGATTGTTGATGATCAAACCATTCTCGAG : GATGAAGCAAGGTTGAAGGAAGTACTTAGGTTTTCATGTGCATGTGGAGCCATCACTACAACCAAGAAAGGAGCAATCCCAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTTTTTTCTTTTTTCCATCTTCATATATTTCCCCCCCTTTATGAGTTTTTTTGAAGCTAGTAGGAAGCCTTTTCAGTTTTGGATTTTAATGTTTTGTTGTGATGAATGTCCATCAAGACACTTAATAAACTAAGCTTTCTTCATATGCAGCTTCCTTGTAACTTCTCCTTTACATCATCATACTAGTATTTCATTATCCAATTCTATATTCTAGTAGACATAGTTTTCACCTATTTCATTTGTCATCAAATCCTAGTAAAGTTGGGAATTTTGCCCAAGA</gDNA_template>
            <first_frame> F  Y  I  K  L  L  I  I  F  T  Y  P  P  L  L  L  S  V  I  L  Y  K  N  L  *  I  H  L  *  I  H  I  F  S  L  F  I  V  A  M  A  V  N  G  A  S  S  S  G  L  I  V  S  F  G  E  M  L  I  D  F  V  P  T  V  S  G  V  S  L  A  E  A  P  G  F  L  K  A  P  G  G  A  P  A  N  V  A  I  A  V  T  R  L  G  G  K  S  A  F  V  G  K  L  G  D  D  E  F  G  H  M  L  A  G  I  L  K  T  N  G  V  Q  A  E  G  I  N  F  D  K  G  A  R  T  A  L  A  F  V  T  L  R  A  D  G  E  R  E  F  M  F  Y  R  N  P  S  A  D  M  L  L  T  P  A  E  L  N  L  D  L  I  R  S  :  A  K  V  F  H  Y  G  S  I  S  L  I  V  E  P  C  R  A  A  H  M  K  A  M  E  V  A  K  E  A  G  A  L  L  S  Y  D  P  N  L  R  L  P  L  W  P  S  A  E  E  A  K  K  Q  I  K  S  I  W  D  S  A  D  V  I  K  V  S  D  V  E  L  E  F  L  T  G  S  N  K  I  D  D  E  S  A  M  S  L  W  H  P  N  L  K  L  L  L  V  T  L  G  E  K  G  C  N  Y  Y  T  K  :  K  F  H  G  T  V  G  G  F  H  V  K  T  V  D  T  T  G  A  G  D  S  F  V  G  A  L  L  T  K  I  V  D  D  Q  T  I  L  E  :  D  E  A  R  L  K  E  V  L  R  F  S  C  A  C  G  A  I  T  T  T  K  K  G  A  I  P  A  L  P  T  A  S  E  A  L  T  L  L  K  G  G  A  *  K  H  R  V  I  F  F  L  F  S  I  F  I  Y  F  P  P  F  M  S  F  F  E  A  S  R  K  P  F  Q  F  W  I  L  M  F  C  C  D  E  C  P  S  R  H  L  I  N  *  A  F  F  I  C  S  F  L  V  T  S  P  L  H  H  H  T  S  I  S  L  S  N  S  I  F  *  *  T  *  F  S  P  I  S  F  V  I  K  S  *  *  S  W  E  F  C  P  R </first_frame>
            <second_frame>  S  I  *  S  S  L  *  F  S  L  I  L  L  F  F  S  L  L  Y  Y  I  K  I  Y  R  Y  T  Y  R  Y  I  Y  F  L  Y  S  S  *  P  W  Q  L  T  V  L  L  L  L  V  *  S  S  V  S  V  R  C  *  S  I  S  F  R  Q  S  P  A  Y  P  L  P  R  L  P  D  F  *  K  L  P  A  V  H  R  R  T  S  L  S  R  *  R  G  S  E  G  S  R  R  S  S  G  N  S  A  T  M  S  S  V  T  C  S  P  G  F  *  K  R  T  A  Y  K  P  K  E  L  I  L  T  R  A  P  G  R  L  W  R  S  *  R  Y  A  P  T  E  S  V  S  L  C  F  T  E  I  P  V  P  I  C  C  S  R  P  L  S  *  I  L  I  L  L  D  L :   L  R  C  S  T  M  D  Q  L  V  *  S  W  S  H  V  E  Q  H  I  *  R  Q  W  K  *  Q  R  R  Q  G  H  C  S  L  M  T  Q  T  F  V  C  R  C  G  L  Q  Q  K  R  P  R  S  K  S  R  A  Y  G  T  L  L  M  *  S  R  S  A  M  W  S  S  N  S  S  L  E  A  T  R  L  M  M  N  P  P  C  P  C  G  I  L  T  *  S  Y  S  W  S  L  L  V  K  R  V  A  I  T  T  P  R :   N  S  M  E  P  L  E  D  S  M  *  R  L  L  T  P  L  E  L  V  I  L  L  L  V  P  F  *  P  R  L  L  M  I  K  P  F  S  R :   M  K  Q  G  *  R  K  Y  L  G  F  H  V  H  V  E  P  S  L  Q  P  R  K  E  Q  S  Q  L  C  L  L  H  L  K  P  S  L  C  S  R  E  E  H  R  N  I  V  L  S  F  F  F  F  P  S  S  Y  I  S  P  P  L  *  V  F  L  K  L  V  G  S  L  F  S  F  G  F  *  C  F  V  V  M  N  V  H  Q  D  T  *  *  T  K  L  S  S  Y  A  A  S  L  *  L  L  L  Y  I  I  I  L  V  F  H  Y  P  I  L  Y  S  S  R  H  S  F  H  L  F  H  L  S  S  N  P  S  K  V  G  N  F  A  Q   </second_frame>
            <third_frame>   L  Y  K  A  P  Y  N  F  H  L  S  S  S  S  S  L  C  Y  T  I  *  K  S  I  D  T  P  I  D  T  Y  I  F  S  I  H  R  S  H  G  S  *  R  C  F  F  F  W  F  D  R  Q  F  R  *  D  V  D  R  F  R  S  D  S  L  R  R  I  P  C  R  G  S  R  I  F  E  S  S  R  R  C  T  G  E  R  R  Y  R  G  D  E  A  R  R  E  V  G  V  R  R  E  T  R  R  R  *  V  R  S  H  A  R  R  D  S  E  N  E  R  R  T  S  R  R  N  *  F  *  Q  G  R  Q  D  G  F  G  V  R  D  A  T  R  R  R  R  A  *  V  Y  V  L  Q  K  S  Q  C  R  Y  V  A  H  A  R  *  V  E  S  *  S  Y  *  I   : C  *  G  V  P  L  W  I  N  *  F  D  R  G  A  M  *  S  S  T  Y  E  G  N  G  S  S  K  G  G  R  G  I  A  L  L  *  P  K  P  S  F  A  V  V  A  F  S  R  R  G  Q  E  A  N  Q  E  H  M  G  L  C  *  C  D  Q  G  Q  R  C  G  A  R  I  P  H  W  K  Q  Q  D  *  *  *  I  R  H  V  L  V  A  S  *  L  E  A  T  L  G  H  S  W  *  K  G  L  Q  L  L  H  Q   : E  I  P  W  N  R  W  R  I  P  C  E  D  C  *  H  H  W  S  W  *  F  F  C  W  C  P  S  N  Q  D  C  *  *  S  N  H  S  R   : G  *  S  K  V  E  G  S  T  *  V  F  M  C  M  W  S  H  H  Y  N  Q  E  R  S  N  P  S  F  A  Y  C  I  *  S  P  H  F  A  Q  G  R  S  I  E  T  S  C  Y  L  F  S  F  F  H  L  H  I  F  P  P  L  Y  E  F  F  *  S  *  *  E  A  F  S  V  L  D  F  N  V  L  L  *  *  M  S  I  K  T  L  N  K  L  S  F  L  H  M  Q  L  P  C  N  F  S  F  T  S  S  Y  *  Y  F  I  I  Q  F  Y  I  L  V  D  I  V  F  T  Y  F  I  C  H  Q  I  L  V  K  L  G  I  L  P  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54898" stop="54464"/>
                    <exon start="53536" stop="53204"/>
                    <exon start="52900" stop="52784"/>
                    <exon start="52699" stop="52568"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1014</number_coding_nucleotides>
                  <number_encoded_amino_acids>338</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IHIFSLFIVAMAVNGASSSGLIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVTRLGGKSAFVGKLGDDEFGHMLAGILKTNGVQAEGINFDKGARTALAFVTLRADGEREFMFYRNPSADMLLTPAELNLDLIRSAKVFHYGSISLIVEPCRAAHMKAMEVAKEAGALLSYDPNLRLPLWPSAEEAKKQIKSIWDSADVIKVSDVELEFLTGSNKIDDESAMSLWHPNLKLLLVTLGEKGCNYYTKKFHGTVGGFHVKTVDTTGAGDSFVGALLTKIVDDQTILEDEARLKEVLRFSCACGAITTTKKGAIPALPTASEALTLLKGGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="57668" PGL_stop="58878"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57668" e_stop="58878"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57668" e_stop="58878" e_length="1211"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57668" stop="58878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327524" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATTTTGTACTTCTGAGACTAATGCCCAAACATCCAAAATCACCAATCTAGATTCTAAGATATTCTACACAACCAGAACCCCTGATCAAGCTAAAGTCTATGCTAAACTCCCAAATCAAGCCAAAGTTTATCCCTCCAAAATTCCTAATCAAGCTAAGGTCTACACAACCAAAATCCCTAATCTAGATTCTAAGATATTCTACGCGACCAGAACCCCTGATCAAGCCAAGGTCTATCCAGCTAATCTTCCCGAACAAGCTAAGGTCTATACATCAAAAATTTATGCAACTTCACACTCTCATAGTCATCATCTTGGAGAAGTCTCTTTCTTCAGAGTCTCTACCCTCAAACCTGGAAACACAGTCCATCTAGACAACTTAGTGAACCCGTTCCCTCATCGCTCATTTCTTCCATCACAAATTGCCTCAAAGATCTCCATTAACTCAAACCATCTCCAACACTTATTCCCTCAAACTTTCACTTCACCATACACAAAAGATACCACAAAAACTACCATCCTCAATTGCAATGCACCTACTCTAAAAGGAGAAGTTAAAACATGCGCGAAATCCTTGGAAGAAATGATAGAGTTCTCAAAGAGAAGCTTGAAACAGAACCACCTAATTTCATTGACAACAGAAAGCATACAAGGGTCAGGACAGAAACTAAAAATTGAGAAATTTCATAAAATCAATTCCCAAAGGAGTGTCTCATGCCATGAGATATTCCTTCCTTTTGCTACATACTTTTGTCATTTGCTATCTTCAACTAACATTTACGCGGTGGAGCTAGTTGATTTAAACACTAATGTTCATGTTAATAAAGCTATGGTTGTTTGTCATATGGATACTTCTTCTTGGCCAGCTGATCATCCAGTTTTCAAAAAATTGAATTTTTCACCTGGAAATGGAGAGGTTTGTCATTGGATGTCACAAGCTGATCTTGTTTGGGTTGGAGATGATGCGCATGCATAAAATAATTTTTTAAAAAAAGTCTACTTATGTTAATTAAGCTTTGAGTTTAATTGTAAAAATGGATTGTCTTTTTTCTTGTTTCTATGTGTTTAGGAATAGTAAGGTATTGTAATTATGGGGAAAAAAGTCCAAATCCTTACTTTCCCTTTCTTGTGTGAAGTGTGAATTGTGATGGTTTTTGGTCTTTTTATGTGTATTTTAATAACTTGCAGTTAATACTCCTATTCTAAGTTACT</gDNA_template>
            <first_frame> I  F  C  T  S  E  T  N  A  Q  T  S  K  I  T  N  L  D  S  K  I  F  Y  T  T  R  T  P  D  Q  A  K  V  Y  A  K  L  P  N  Q  A  K  V  Y  P  S  K  I  P  N  Q  A  K  V  Y  T  T  K  I  P  N  L  D  S  K  I  F  Y  A  T  R  T  P  D  Q  A  K  V  Y  P  A  N  L  P  E  Q  A  K  V  Y  T  S  K  I  Y  A  T  S  H  S  H  S  H  H  L  G  E  V  S  F  F  R  V  S  T  L  K  P  G  N  T  V  H  L  D  N  L  V  N  P  F  P  H  R  S  F  L  P  S  Q  I  A  S  K  I  S  I  N  S  N  H  L  Q  H  L  F  P  Q  T  F  T  S  P  Y  T  K  D  T  T  K  T  T  I  L  N  C  N  A  P  T  L  K  G  E  V  K  T  C  A  K  S  L  E  E  M  I  E  F  S  K  R  S  L  K  Q  N  H  L  I  S  L  T  T  E  S  I  Q  G  S  G  Q  K  L  K  I  E  K  F  H  K  I  N  S  Q  R  S  V  S  C  H  E  I  F  L  P  F  A  T  Y  F  C  H  L  L  S  S  T  N  I  Y  A  V  E  L  V  D  L  N  T  N  V  H  V  N  K  A  M  V  V  C  H  M  D  T  S  S  W  P  A  D  H  P  V  F  K  K  L  N  F  S  P  G  N  G  E  V  C  H  W  M  S  Q  A  D  L  V  W  V  G  D  D  A  H  A  *  N  N  F  L  K  K  V  Y  L  C  *  L  S  F  E  F  N  C  K  N  G  L  S  F  F  L  F  L  C  V  *  E  *  *  G  I  V  I  M  G  K  K  V  Q  I  L  T  F  P  F  L  C  E  V  *  I  V  M  V  F  G  L  F  M  C  I  L  I  T  C  S  *  Y  S  Y  S  K  L   </first_frame>
            <second_frame>  Y  F  V  L  L  R  L  M  P  K  H  P  K  S  P  I  *  I  L  R  Y  S  T  Q  P  E  P  L  I  K  L  K  S  M  L  N  S  Q  I  K  P  K  F  I  P  P  K  F  L  I  K  L  R  S  T  Q  P  K  S  L  I  *  I  L  R  Y  S  T  R  P  E  P  L  I  K  P  R  S  I  Q  L  I  F  P  N  K  L  R  S  I  H  Q  K  F  M  Q  L  H  T  L  I  V  I  I  L  E  K  S  L  S  S  E  S  L  P  S  N  L  E  T  Q  S  I  *  T  T  *  *  T  R  S  L  I  A  H  F  F  H  H  K  L  P  Q  R  S  P  L  T  Q  T  I  S  N  T  Y  S  L  K  L  S  L  H  H  T  Q  K  I  P  Q  K  L  P  S  S  I  A  M  H  L  L  *  K  E  K  L  K  H  A  R  N  P  W  K  K  *  *  S  S  Q  R  E  A  *  N  R  T  T  *  F  H  *  Q  Q  K  A  Y  K  G  Q  D  R  N  *  K  L  R  N  F  I  K  S  I  P  K  G  V  S  H  A  M  R  Y  S  F  L  L  L  H  T  F  V  I  C  Y  L  Q  L  T  F  T  R  W  S  *  L  I  *  T  L  M  F  M  L  I  K  L  W  L  F  V  I  W  I  L  L  L  G  Q  L  I  I  Q  F  S  K  N  *  I  F  H  L  E  M  E  R  F  V  I  G  C  H  K  L  I  L  F  G  L  E  M  M  R  M  H  K  I  I  F  *  K  K  S  T  Y  V  N  *  A  L  S  L  I  V  K  M  D  C  L  F  S  C  F  Y  V  F  R  N  S  K  V  L  *  L  W  G  K  K  S  K  S  L  L  S  L  S  C  V  K  C  E  L  *  W  F  L  V  F  L  C  V  F  *  *  L  A  V  N  T  P  I  L  S  Y  </second_frame>
            <third_frame>   I  L  Y  F  *  D  *  C  P  N  I  Q  N  H  Q  S  R  F  *  D  I  L  H  N  Q  N  P  *  S  S  *  S  L  C  *  T  P  K  S  S  Q  S  L  S  L  Q  N  S  *  S  S  *  G  L  H  N  Q  N  P  *  S  R  F  *  D  I  L  R  D  Q  N  P  *  S  S  Q  G  L  S  S  *  S  S  R  T  S  *  G  L  Y  I  K  N  L  C  N  F  T  L  S  *  S  S  S  W  R  S  L  F  L  Q  S  L  Y  P  Q  T  W  K  H  S  P  S  R  Q  L  S  E  P  V  P  S  S  L  I  S  S  I  T  N  C  L  K  D  L  H  *  L  K  P  S  P  T  L  I  P  S  N  F  H  F  T  I  H  K  R  Y  H  K  N  Y  H  P  Q  L  Q  C  T  Y  S  K  R  R  S  *  N  M  R  E  I  L  G  R  N  D  R  V  L  K  E  K  L  E  T  E  P  P  N  F  I  D  N  R  K  H  T  R  V  R  T  E  T  K  N  *  E  I  S  *  N  Q  F  P  K  E  C  L  M  P  *  D  I  P  S  F  C  Y  I  L  L  S  F  A  I  F  N  *  H  L  R  G  G  A  S  *  F  K  H  *  C  S  C  *  *  S  Y  G  C  L  S  Y  G  Y  F  F  L  A  S  *  S  S  S  F  Q  K  I  E  F  F  T  W  K  W  R  G  L  S  L  D  V  T  S  *  S  C  L  G  W  R  *  C  A  C  I  K  *  F  F  K  K  S  L  L  M  L  I  K  L  *  V  *  L  *  K  W  I  V  F  F  L  V  S  M  C  L  G  I  V  R  Y  C  N  Y  G  E  K  S  P  N  P  Y  F  P  F  L  V  *  S  V  N  C  D  G  F  W  S  F  Y  V  Y  F  N  N  L  Q  L  I  L  L  F  *  V  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57668" stop="58642"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>972</number_coding_nucleotides>
                  <number_encoded_amino_acids>324</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFCTSETNAQTSKITNLDSKIFYTTRTPDQAKVYAKLPNQAKVYPSKIPNQAKVYTTKIPNLDSKIFYATRTPDQAKVYPANLPEQAKVYTSKIYATSHSHSHHLGEVSFFRVSTLKPGNTVHLDNLVNPFPHRSFLPSQIASKISINSNHLQHLFPQTFTSPYTKDTTKTTILNCNAPTLKGEVKTCAKSLEEMIEFSKRSLKQNHLISLTTESIQGSGQKLKIEKFHKINSQRSVSCHEIFLPFATYFCHLLSSTNIYAVELVDLNTNVHVNKAMVVCHMDTSSWPADHPVFKKLNFSPGNGEVCHWMSQADLVWVGDDAHA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="60789" PGL_stop="61517"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60789" e_stop="61517"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="60789" e_stop="61517" e_length="729"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60789" stop="61517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324014" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACAGCTATGGGGCTCTCAGCTTCTAAGAGAGTTAGCAATTCACTCCAAAATTCATCCGAATTCAACTCGGCATGTGATTCAGTCTATGATGATTGTCTCTCCCTATCACAGCACGCTTTCGCCGGAGTGAAACCCTACCAGCTTTTCTCCGCCGTGGAACGCCTGCACGCTTCTCTCTCTCCCTCCGTACCTCTCATAAAAAATTGGGTTAAATCGCCTCCGACCCGATTACAGGTCGATAAGGCCTTCAAAATCGTGTCAACGCGCCGATCCGGCGAAAAGGAGAGTGAAATTGTGCTTGGGAACGAGGAATTCAAGGAGTTCTCAGTGGAGGTATTTTCGGACGCTGTCGTTTCGTGTGCAGGGAAAGAGCTTCTAAAGCGGGTTCCGGTTGGTGCTTTGGGGATCGCTGGCGTTGGTGCGGTGGTGAAGCCTGGGAAAGAATTAATTGCGGCGGCGATTGGTGCTTACGCGCTCGGTGTTGCAACATCGGTATACGTCAGCTTGGCTTAAACGTATTTTTTTTGTTTTTTTTTAAAATTACAAAAATGAATAAAAGTTTTTACAAGTTTGGTTAAGCCCAAAAGTACAAATTAGTCATGTTTTAAATTATTATAACCCCTAATAAGAGACTGAAAGCAAGTAGAATAATTGTAATTAGATGATTAACAGTCTTTATCCACATTTATATAATTTGTATAAATTATTTTTTTTTTATAAAAAAAAA</gDNA_template>
            <first_frame> L  Q  L  W  G  S  Q  L  L  R  E  L  A  I  H  S  K  I  H  P  N  S  T  R  H  V  I  Q  S  M  M  I  V  S  P  Y  H  S  T  L  S  P  E  *  N  P  T  S  F  S  P  P  W  N  A  C  T  L  L  S  L  P  P  Y  L  S  *  K  I  G  L  N  R  L  R  P  D  Y  R  S  I  R  P  S  K  S  C  Q  R  A  D  P  A  K  R  R  V  K  L  C  L  G  T  R  N  S  R  S  S  Q  W  R  Y  F  R  T  L  S  F  R  V  Q  G  K  S  F  *  S  G  F  R  L  V  L  W  G  S  L  A  L  V  R  W  *  S  L  G  K  N  *  L  R  R  R  L  V  L  T  R  S  V  L  Q  H  R  Y  T  S  A  W  L  K  R  I  F  F  V  F  F  *  N  Y  K  N  E  *  K  F  L  Q  V  W  L  S  P  K  V  Q  I  S  H  V  L  N  Y  Y  N  P  *  *  E  T  E  S  K  *  N  N  C  N  *  M  I  N  S  L  Y  P  H  L  Y  N  L  Y  K  L  F  F  F  Y  K  K  K </first_frame>
            <second_frame>  Y  S  Y  G  A  L  S  F  *  E  S  *  Q  F  T  P  K  F  I  R  I  Q  L  G  M  *  F  S  L  *  *  L  S  L  P  I  T  A  R  F  R  R  S  E  T  L  P  A  F  L  R  R  G  T  P  A  R  F  S  L  S  L  R  T  S  H  K  K  L  G  *  I  A  S  D  P  I  T  G  R  *  G  L  Q  N  R  V  N  A  P  I  R  R  K  G  E  *  N  C  A  W  E  R  G  I  Q  G  V  L  S  G  G  I  F  G  R  C  R  F  V  C  R  E  R  A  S  K  A  G  S  G  W  C  F  G  D  R  W  R  W  C  G  G  E  A  W  E  R  I  N  C  G  G  D  W  C  L  R  A  R  C  C  N  I  G  I  R  Q  L  G  L  N  V  F  F  L  F  F  F  K  I  T  K  M  N  K  S  F  Y  K  F  G  *  A  Q  K  Y  K  L  V  M  F  *  I  I  I  T  P  N  K  R  L  K  A  S  R  I  I  V  I  R  *  L  T  V  F  I  H  I  Y  I  I  C  I  N  Y  F  F  F  I  K  K   </second_frame>
            <third_frame>   T  A  M  G  L  S  A  S  K  R  V  S  N  S  L  Q  N  S  S  E  F  N  S  A  C  D  S  V  Y  D  D  C  L  S  L  S  Q  H  A  F  A  G  V  K  P  Y  Q  L  F  S  A  V  E  R  L  H  A  S  L  S  P  S  V  P  L  I  K  N  W  V  K  S  P  P  T  R  L  Q  V  D  K  A  F  K  I  V  S  T  R  R  S  G  E  K  E  S  E  I  V  L  G  N  E  E  F  K  E  F  S  V  E  V  F  S  D  A  V  V  S  C  A  G  K  E  L  L  K  R  V  P  V  G  A  L  G  I  A  G  V  G  A  V  V  K  P  G  K  E  L  I  A  A  A  I  G  A  Y  A  L  G  V  A  T  S  V  Y  V  S  L  A  *  T  Y  F  F  C  F  F  L  K  L  Q  K  *  I  K  V  F  T  S  L  V  K  P  K  S  T  N  *  S  C  F  K  L  L  *  P  L  I  R  D  *  K  Q  V  E  *  L  *  L  D  D  *  Q  S  L  S  T  F  I  *  F  V  *  I  I  F  F  L  *  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0246E15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60791" stop="61303"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TAMGLSASKRVSNSLQNSSEFNSACDSVYDDCLSLSQHAFAGVKPYQLFSAVERLHASLSPSVPLIKNWVKSPPTRLQVDKAFKIVSTRRSGEKESEIVLGNEEFKEFSVEVFSDAVVSCAGKELLKRVPVGALGIAGVGAVVKPGKELIAAAIGAYALGVATSVYVSLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 24 chains have been computed
$ 
$ memory statistics:
$ 38288 bytes spliced alignments in total
$ 20 spliced alignments have been stored
$ 1914 bytes was the average size of a spliced alignment
$ 21480 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1652 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 27 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 20:42:21
-->
