<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 08:44:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548801" ref_strand="+" ref_description="SGN-E548801 [TUS-64-I18]">
      <seq>gaagaggttaataaactgtggaagcaacaaagaagcagattctttgtatatataattgggtaattagactaaaaaaaaagagtctaaaaggagcaccaagtttatggtagtattagtataactaagtggaggaagaaaagggagagagattctagagagagaagggtagctcaagttttgcttttgggtttcttgttggacttggctttttggctttggtttcagctttttctctgaaagggggttttaatggaggactttaaacataacttgagggtgacacagtaatgctagaaacatgggggaaaaaggcagttggttttatgccctcaaaagggtttttacgtgtaactccaagaagaagtctgcctatggatcagggaagaaaactgcaaaggaaaagaagaagggtcgtagaatactgaggcatggagagttcaaatcattcctcttcagagaaccaagcagtattgagaaaatactgggtgaggttgatgatcagaacctacttgttaggcctcctacttctgaacaatctggcattccatctgcattccctgtggcaccaacttctccaagaatcaattcacctagagatgcgtctcctcagagttcttatagggctacatctcctggtgtcacttctccgagggtcgcctctccaagggttgtctctcctaaggcagcttctccaaaggttacctctccccaggaagcttctcccgaggttacatctcccagggaagcttatccaaaggctacctctgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="2441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="202" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="275" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="203" i_stop="1347" i_length="1145">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1348" g_stop="1445" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="373" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1446" i_stop="1765" i_length="320">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1766" g_stop="2162" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="770" r_length="397" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E548801" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="202"/>
          <exon e_start="1348" e_stop="1445"/>
          <exon e_start="1766" e_stop="2162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAGTCTAAAAGGAGCACCAAGTTTATGGTAGTATTAGTATAACTAAGTGGAGGAAGAAAAGGGAGAGAGATTCTAGAGAGAGAAGGGTAGCTCAAGTTTTGCTTTTGGGTTTCTTGTTGGACTTGGCTTTTTGGCTTTGGTTTCAGCTTTTTCTCTGAAAGGGGGTTTTAATGGAGGACTTTAAACATAACTTGAGGTATTTGGGGTTTCTATCTTTCATAAATTAATTTACTTTCTGTAGACTCTGCAAGTTTGGATGGTGATTTTAGGGCATAAAAATGTGTTCTTTACTCCTTTGTGAACTAAAAATTTGATTTTTATTTTTGTGTGTCTTTATATGTGGTGTAGAATTTGGGGGTTTGTTTTTTGATTTTGATTTTATAATTTCTTGATATTATTTGTCTGTTACATTCTTGGTAGTTGTCAAGGAAATAAGGACAAAACAACAAATTTCATCATCAGAATGTAATTTTAGCATCTATTTGTAAAAAAAATATCTATTTTTTTCTGCCCCTTGTGTTTCTCTCTTCTGATCTCATCACCATCTTGAAGAAGGTTGAAAAGCAGCAAGGAATTTATTTTGTTTTTGAAAAAAAAGGAAGAGTATTATGAAATCATCTGGATGATGATGATGATGACATGAACTTGTGTGTTATTGTCTTTAGCTAGTTTAAAAATTGGACCTTTCTTTAGTTTGATTCCTTCTTGTTCTTGAAGTTTGAATTTTAAAGTCAACTCAAAGAATGAAATATCTAGAAAAGAAATTAAAGGGACCTAAAAACTAAGTTGGACAGTTTCTTCACTTTCGACGTTGCACCCATGCCGGATTATCCAAAAATACACTATTTTTGAAGAAACTTTTAGAGATTTGGACACATTTTTGAAGAGTTTGAGCAACATAGACTAAAAATTCATTTCCCTGTTTGCCTTTTCCTTTATTCATTTTTTGGTTTTCCCATTTCTATGTGGTGAATAATTTTCCTCTCCCTTGATCAACTTATGACAGCTAAATGTGTGAATCCCAAATTTGAACTTATGGAAATATCTTCTTTAAATAATACTGATGACTTTACTTCAAGATGCTTATCAACAAGGGGACCTAACTGAGTAAATTAGATGATTTGCAAATTTTTGATGTATTTGGTTTTAGGTGCGCAATCTATGTTTTTTATGGAGTGCTTGCGTTGCATTCTCCGAGGCGGCTCGAAATGCCTCTATCTTGGGTTTCGTTCTAGAATATCTCTGTTCAATACAATGAGTGTATGAAGTTGCTTTCGCACTGCATGTGTTCAATTAAGTTCTTTTTGAATGACAATTACGTTAAGTTTCCTTCTCTTTCAGGGTGACACAGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTATGTAAGTTTTAAAAGTTTGGTTTCTTGAACTTGATATTCTCATATTACTTGTATCTGTCCCAGAAGTTGTTATTTTATGATGAAATAAACCAACTTCAATAATTGATGTAGTTTCTGTCAATCTAACTACTAATCCTGGTTGAGAATTGTGTTTATAAAGTGGACCAAGGGTGAACTAAGTATTTGGAAAAATTCAGCTCTGGCCTGATTTCCTTAAATATTCCCTTACAAATCATACTAAGATGGTGGGAAGAACTTGCTGGATATCTATGCTTCTAACATTATTATACAATCCTTAGCTAAGTTGGATGATTGTTACAGGGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTCTCCGAGGGTCGCCTCTCCAAGGGTTGTCTCTCCTAAGGCAGCTTCTCCAAAGGTTACCTCTCCCAAGGAAGCTTCTCCGAAGGTTACATCTCCCAGGGAAGCTTNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>AAAAAAGAGTCTAAAAGGAGCACCAAGTTTATGGTAGTATTAGTATAACTAAGTGGAGGAAGAAAAGGGAGAGAGATTCTAGAGAGAGAAGGGTAGCTCAAGTTTTGCTTTTGGGTTTCTTGTTGGACTTGGCTTTTTGGCTTTGGTTTCAGCTTTTTCTCTGAAAGGGGGTTTTAATGGAGGACTTTAAACATAACTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACACAGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTAT................................................................................................................................................................................................................................................................................................................................GGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTCTCCGAGGGTCGCCTCTCCAAGGGTTGTCTCTCCTAAGGCAGCTTCTCCAAAGGTTACCTCTCCCCAGGAAGCTTCTCCCGAGGTTACATCTCCCAGGGAAGCTTATCCAAAGGCTACCTCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210201" ref_strand="+" ref_description="SGN-E210201 [cLEC-40-C14]">
      <seq>agcaccaagtttatggtagtattagtataactaagtggaggaagaaaagggagagagattctagagagagaagggtagctcaagttttgcttttgggtttcttgttggacttggctttttggctttggtttcagctttttctctgaaagggggttttaatggaggactttaaacataacttgagggtgacacagtaatgctagaaacatgggggaaaaaggcagttggttttatgccctcaaaagggtttttacgtgtaactccaagaagaagtctgcctatggatcagggaagaaaactgcaaaggaaaagaagaagggtcgtagaatactgaggcatggagagttcaaatcattcctcttcagagaaccaagcagtattgagaaaatactgggtgaggttgatgatcagaacctacttgttaggcctcctacttctgaacaatctggcattccatctgcattccctgtggcaccaacttctccaagaatcaattcacctagagatgcgtctcctcagagttcttatagggctacatctcctggtgtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="2334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19" g_stop="202" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="203" i_stop="1347" i_length="1145">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1348" g_stop="1445" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="282" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1446" i_stop="1765" i_length="320">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1766" g_stop="2034" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="551" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E210201" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19" e_stop="202"/>
          <exon e_start="1348" e_stop="1445"/>
          <exon e_start="1766" e_stop="2034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACCAAGTTTATGGTAGTATTAGTATAACTAAGTGGAGGAAGAAAAGGGAGAGAGATTCTAGAGAGAGAAGGGTAGCTCAAGTTTTGCTTTTGGGTTTCTTGTTGGACTTGGCTTTTTGGCTTTGGTTTCAGCTTTTTCTCTGAAAGGGGGTTTTAATGGAGGACTTTAAACATAACTTGAGGTATTTGGGGTTTCTATCTTTCATAAATTAATTTACTTTCTGTAGACTCTGCAAGTTTGGATGGTGATTTTAGGGCATAAAAATGTGTTCTTTACTCCTTTGTGAACTAAAAATTTGATTTTTATTTTTGTGTGTCTTTATATGTGGTGTAGAATTTGGGGGTTTGTTTTTTGATTTTGATTTTATAATTTCTTGATATTATTTGTCTGTTACATTCTTGGTAGTTGTCAAGGAAATAAGGACAAAACAACAAATTTCATCATCAGAATGTAATTTTAGCATCTATTTGTAAAAAAAATATCTATTTTTTTCTGCCCCTTGTGTTTCTCTCTTCTGATCTCATCACCATCTTGAAGAAGGTTGAAAAGCAGCAAGGAATTTATTTTGTTTTTGAAAAAAAAGGAAGAGTATTATGAAATCATCTGGATGATGATGATGATGACATGAACTTGTGTGTTATTGTCTTTAGCTAGTTTAAAAATTGGACCTTTCTTTAGTTTGATTCCTTCTTGTTCTTGAAGTTTGAATTTTAAAGTCAACTCAAAGAATGAAATATCTAGAAAAGAAATTAAAGGGACCTAAAAACTAAGTTGGACAGTTTCTTCACTTTCGACGTTGCACCCATGCCGGATTATCCAAAAATACACTATTTTTGAAGAAACTTTTAGAGATTTGGACACATTTTTGAAGAGTTTGAGCAACATAGACTAAAAATTCATTTCCCTGTTTGCCTTTTCCTTTATTCATTTTTTGGTTTTCCCATTTCTATGTGGTGAATAATTTTCCTCTCCCTTGATCAACTTATGACAGCTAAATGTGTGAATCCCAAATTTGAACTTATGGAAATATCTTCTTTAAATAATACTGATGACTTTACTTCAAGATGCTTATCAACAAGGGGACCTAACTGAGTAAATTAGATGATTTGCAAATTTTTGATGTATTTGGTTTTAGGTGCGCAATCTATGTTTTTTATGGAGTGCTTGCGTTGCATTCTCCGAGGCGGCTCGAAATGCCTCTATCTTGGGTTTCGTTCTAGAATATCTCTGTTCAATACAATGAGTGTATGAAGTTGCTTTCGCACTGCATGTGTTCAATTAAGTTCTTTTTGAATGACAATTACGTTAAGTTTCCTTCTCTTTCAGGGTGACACAGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTATGTAAGTTTTAAAAGTTTGGTTTCTTGAACTTGATATTCTCATATTACTTGTATCTGTCCCAGAAGTTGTTATTTTATGATGAAATAAACCAACTTCAATAATTGATGTAGTTTCTGTCAATCTAACTACTAATCCTGGTTGAGAATTGTGTTTATAAAGTGGACCAAGGGTGAACTAAGTATTTGGAAAAATTCAGCTCTGGCCTGATTTCCTTAAATATTCCCTTACAAATCATACTAAGATGGTGGGAAGAACTTGCTGGATATCTATGCTTCTAACATTATTATACAATCCTTAGCTAAGTTGGATGATTGTTACAGGGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCAC</genome_strand>
        <mrna_strand>AGCACCAAGTTTATGGTAGTATTAGTATAACTAAGTGGAGGAAGAAAAGGGAGAGAGATTCTAGAGAGAGAAGGGTAGCTCAAGTTTTGCTTTTGGGTTTCTTGTTGGACTTGGCTTTTTGGCTTTGGTTTCAGCTTTTTCTCTGAAAGGGGGTTTTAATGGAGGACTTTAAACATAACTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACACAGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTAT................................................................................................................................................................................................................................................................................................................................GGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333967" ref_strand="+" ref_description="SGN-E333967 [cTOD-24-P21]">
      <seq>ggtagtattagtataactaagtggaggaagaaaagggagagagattctagagagagaagggtagctcaagttttgcttttgggtttcttgttggacttggctttttggctttggtttcagctttttctctgaaagggggttttaatggaggactttaaacataacttgagggtgacacagtaatgctagaaacatgggggaaaaaggcagttggttttatgccctcaaaagggtttttacgtgtaactccaagaagaagtctgcctatggatcagggaagaaaactgcaaaggaaaagaagaagggtcgtagaatactgaggcatggagagttcaaatcattcctcttcagagaaccaagcagtattgagaaaatactgggtgaggttgatgatcagaacctacttgttaggcctcctacttctgaacaatctggcattccatctgcattccctgtggcaccaacttctccaagaatcaattcacctagagatgcgtctcctcagagttcttatagggctacatctcctggtgtcacttctccgagggtcgcctctccaagggttgtctctcctaaggcagcttctccaaaggttacctctcccaaggaagcttctccgaaggttacatctcccagggaagcttatccaaaggctacctctgctagtgctccttccctaaaggctctctctcctanggaagcttctccaaaggcgaactctgctagtgctccttcccagaaagctactgctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="2441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33" g_stop="202" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="203" i_stop="1347" i_length="1145">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1348" g_stop="1445" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="268" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1446" i_stop="1765" i_length="320">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1766" g_stop="2250" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="753" r_length="485" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E333967" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33" e_stop="202"/>
          <exon e_start="1348" e_stop="1445"/>
          <exon e_start="1766" e_stop="2250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGTATTAGTATAACTAAGTGGAGGAAGAAAAGGGAGAGAGATTCTAGAGAGAGAAGGGTAGCTCAAGTTTTGCTTTTGGGTTTCTTGTTGGACTTGGCTTTTTGGCTTTGGTTTCAGCTTTTTCTCTGAAAGGGGGTTTTAATGGAGGACTTTAAACATAACTTGAGGTATTTGGGGTTTCTATCTTTCATAAATTAATTTACTTTCTGTAGACTCTGCAAGTTTGGATGGTGATTTTAGGGCATAAAAATGTGTTCTTTACTCCTTTGTGAACTAAAAATTTGATTTTTATTTTTGTGTGTCTTTATATGTGGTGTAGAATTTGGGGGTTTGTTTTTTGATTTTGATTTTATAATTTCTTGATATTATTTGTCTGTTACATTCTTGGTAGTTGTCAAGGAAATAAGGACAAAACAACAAATTTCATCATCAGAATGTAATTTTAGCATCTATTTGTAAAAAAAATATCTATTTTTTTCTGCCCCTTGTGTTTCTCTCTTCTGATCTCATCACCATCTTGAAGAAGGTTGAAAAGCAGCAAGGAATTTATTTTGTTTTTGAAAAAAAAGGAAGAGTATTATGAAATCATCTGGATGATGATGATGATGACATGAACTTGTGTGTTATTGTCTTTAGCTAGTTTAAAAATTGGACCTTTCTTTAGTTTGATTCCTTCTTGTTCTTGAAGTTTGAATTTTAAAGTCAACTCAAAGAATGAAATATCTAGAAAAGAAATTAAAGGGACCTAAAAACTAAGTTGGACAGTTTCTTCACTTTCGACGTTGCACCCATGCCGGATTATCCAAAAATACACTATTTTTGAAGAAACTTTTAGAGATTTGGACACATTTTTGAAGAGTTTGAGCAACATAGACTAAAAATTCATTTCCCTGTTTGCCTTTTCCTTTATTCATTTTTTGGTTTTCCCATTTCTATGTGGTGAATAATTTTCCTCTCCCTTGATCAACTTATGACAGCTAAATGTGTGAATCCCAAATTTGAACTTATGGAAATATCTTCTTTAAATAATACTGATGACTTTACTTCAAGATGCTTATCAACAAGGGGACCTAACTGAGTAAATTAGATGATTTGCAAATTTTTGATGTATTTGGTTTTAGGTGCGCAATCTATGTTTTTTATGGAGTGCTTGCGTTGCATTCTCCGAGGCGGCTCGAAATGCCTCTATCTTGGGTTTCGTTCTAGAATATCTCTGTTCAATACAATGAGTGTATGAAGTTGCTTTCGCACTGCATGTGTTCAATTAAGTTCTTTTTGAATGACAATTACGTTAAGTTTCCTTCTCTTTCAGGGTGACACAGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTATGTAAGTTTTAAAAGTTTGGTTTCTTGAACTTGATATTCTCATATTACTTGTATCTGTCCCAGAAGTTGTTATTTTATGATGAAATAAACCAACTTCAATAATTGATGTAGTTTCTGTCAATCTAACTACTAATCCTGGTTGAGAATTGTGTTTATAAAGTGGACCAAGGGTGAACTAAGTATTTGGAAAAATTCAGCTCTGGCCTGATTTCCTTAAATATTCCCTTACAAATCATACTAAGATGGTGGGAAGAACTTGCTGGATATCTATGCTTCTAACATTATTATACAATCCTTAGCTAAGTTGGATGATTGTTACAGGGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTCTCCGAGGGTCGCCTCTCCAAGGGTTGTCTCTCCTAAGGCAGCTTCTCCAAAGGTTACCTCTCCCAAGGAAGCTTCTCCGAAGGTTACATCTCCCAGGGAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTATTTT</genome_strand>
        <mrna_strand>GGTAGTATTAGTATAACTAAGTGGAGGAAGAAAAGGGAGAGAGATTCTAGAGAGAGAAGGGTAGCTCAAGTTTTGCTTTTGGGTTTCTTGTTGGACTTGGCTTTTTGGCTTTGGTTTCAGCTTTTTCTCTGAAAGGGGGTTTTAATGGAGGACTTTAAACATAACTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACACAGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTAT................................................................................................................................................................................................................................................................................................................................GGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTCTCCGAGGGTCGCCTCTCCAAGGGTTGTCTCTCCTAAGGCAGCTTCTCCAAAGGTTACCTCTCCCAAGGAAGCTTCTCCGAAGGTTACATCTCCCAGGGAAGCTTATCCAAAGGCTACCTCTGCTAGTGCTCCTTCCCTAAAGGCTCTCTCTCCTANGGAAGCTTCTCCAAAGGCGAACTCTGCTAGTGCTCCTTCCCAGAAAGCTACTGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211683" ref_strand="+" ref_description="SGN-E211683 [cLEC-67-L6]">
      <seq>aaagggagagagattctagagagagaagggtagctcaagttttgcttttgggtttcttgttggacttggctttttggctttggtttcagctttttctctgaaagggggttttaatggaggactttaaacataacttgggggtgacacagtaatgctagaaacatgggggaaaaaggcagttggttttatgccctcaaaagggtttttacgtgtaactccaagaagaagtctgcctatggatcagggaagaaaactgcaaaggaaaagaagaagggtcgtagaatactgaggcatggagagttcaaatcattcctcttcagagaaccaagcagtattgagaaaatactgggtgaggttgatgatcagaacctacttgttaggcctcctacttctgaacaatctggcattccatctgcattccctgtggcaccaacttctccaagaatcaattcacctagagatgcgtctcctcagagttcttatagggctacatctcctggtgtcacttctccgagggtcgcctctccaagggttgtctctcctaaagcagcttctccaaaggttacctctcccaaggaagcttctccgaaggttacatctcccagggaagcttatccaaaggctacctctgctagtgctccttcctaaaggctctctctcctagggaagcttctccaaaggcgaactctgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="2441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64" g_stop="202" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="203" i_stop="1347" i_length="1145">
            <donor d_prob="0.927" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1348" g_stop="1445" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="237" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1446" i_stop="1765" i_length="320">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1766" g_stop="2221" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="693" r_length="456" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E211683" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64" e_stop="202"/>
          <exon e_start="1348" e_stop="1445"/>
          <exon e_start="1766" e_stop="2221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGGAGAGAGATTCTAGAGAGAGAAGGGTAGCTCAAGTTTTGCTTTTGGGTTTCTTGTTGGACTTGGCTTTTTGGCTTTGGTTTCAGCTTTTTCTCTGAAAGGGGGTTTTAATGGAGGACTTTAAACATAACTTGAGGTATTTGGGGTTTCTATCTTTCATAAATTAATTTACTTTCTGTAGACTCTGCAAGTTTGGATGGTGATTTTAGGGCATAAAAATGTGTTCTTTACTCCTTTGTGAACTAAAAATTTGATTTTTATTTTTGTGTGTCTTTATATGTGGTGTAGAATTTGGGGGTTTGTTTTTTGATTTTGATTTTATAATTTCTTGATATTATTTGTCTGTTACATTCTTGGTAGTTGTCAAGGAAATAAGGACAAAACAACAAATTTCATCATCAGAATGTAATTTTAGCATCTATTTGTAAAAAAAATATCTATTTTTTTCTGCCCCTTGTGTTTCTCTCTTCTGATCTCATCACCATCTTGAAGAAGGTTGAAAAGCAGCAAGGAATTTATTTTGTTTTTGAAAAAAAAGGAAGAGTATTATGAAATCATCTGGATGATGATGATGATGACATGAACTTGTGTGTTATTGTCTTTAGCTAGTTTAAAAATTGGACCTTTCTTTAGTTTGATTCCTTCTTGTTCTTGAAGTTTGAATTTTAAAGTCAACTCAAAGAATGAAATATCTAGAAAAGAAATTAAAGGGACCTAAAAACTAAGTTGGACAGTTTCTTCACTTTCGACGTTGCACCCATGCCGGATTATCCAAAAATACACTATTTTTGAAGAAACTTTTAGAGATTTGGACACATTTTTGAAGAGTTTGAGCAACATAGACTAAAAATTCATTTCCCTGTTTGCCTTTTCCTTTATTCATTTTTTGGTTTTCCCATTTCTATGTGGTGAATAATTTTCCTCTCCCTTGATCAACTTATGACAGCTAAATGTGTGAATCCCAAATTTGAACTTATGGAAATATCTTCTTTAAATAATACTGATGACTTTACTTCAAGATGCTTATCAACAAGGGGACCTAACTGAGTAAATTAGATGATTTGCAAATTTTTGATGTATTTGGTTTTAGGTGCGCAATCTATGTTTTTTATGGAGTGCTTGCGTTGCATTCTCCGAGGCGGCTCGAAATGCCTCTATCTTGGGTTTCGTTCTAGAATATCTCTGTTCAATACAATGAGTGTATGAAGTTGCTTTCGCACTGCATGTGTTCAATTAAGTTCTTTTTGAATGACAATTACGTTAAGTTTCCTTCTCTTTCAGGGTGACACAGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTATGTAAGTTTTAAAAGTTTGGTTTCTTGAACTTGATATTCTCATATTACTTGTATCTGTCCCAGAAGTTGTTATTTTATGATGAAATAAACCAACTTCAATAATTGATGTAGTTTCTGTCAATCTAACTACTAATCCTGGTTGAGAATTGTGTTTATAAAGTGGACCAAGGGTGAACTAAGTATTTGGAAAAATTCAGCTCTGGCCTGATTTCCTTAAATATTCCCTTACAAATCATACTAAGATGGTGGGAAGAACTTGCTGGATATCTATGCTTCTAACATTATTATACAATCCTTAGCTAAGTTGGATGATTGTTACAGGGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTCTCCGAGGGTCGCCTCTCCAAGGGTTGTCTCTCCTAAGGCAGCTTCTCCAAAGGTTACCTCTCCCAAGGAAGCTTCTCCGAAGGTTACATCTCCCAGGGAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>AAAGGGAGAGAGATTCTAGAGAGAGAAGGGTAGCTCAAGTTTTGCTTTTGGGTTTCTTGTTGGACTTGGCTTTTTGGCTTTGGTTTCAGCTTTTTCTCTGAAAGGGGGTTTTAATGGAGGACTTTAAACATAACTTGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACACAGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTAT................................................................................................................................................................................................................................................................................................................................GGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTCTCCGAGGGTCGCCTCTCCAAGGGTTGTCTCTCCTAAAGCAGCTTCTCCAAAGGTTACCTCTCCCAAGGAAGCTTCTCCGAAGGTTACATCTCCCAGGGAAGCTTATCCAAAGGCTACCTCTGCTAGTGCTCCTTCCTAAAGGCTCTCTCTCCTAGGGAAGCTTCTCCAAAGGCGAACTCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333830" ref_strand="+" ref_description="SGN-E333830 [cTOD-22-P6]">
      <seq>ttctagagagagaagggtagctcaagttttgcttttgggtttcttgttggacttggctttttggctttggtttcagctttttctctgaaagggggttttaatggaggactttaaacataacttgagggtgacacagtaatgctagaaacatgggggaaaaaggcagttggttttatgccctcaaaagggtttttacgtgtaactccaagaagaagtctgcctatggatcagggaagaaaactgcaaaggaaaagaagaagggtcgtagaatactgaggcatggagagttcaaatcattcctcttcagagaaccaagcagtattgagaaaatactgggtgaggttgatgatcagaacctacttgttaggcctcctacttctgaacaatctggcattccatctgcattccctgtggcaccaacttctccaagaatcaattcacctagagatgcgtctcctcagagttcttatagggctacatctcctggtgtcacttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="2339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77" g_stop="202" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="203" i_stop="1347" i_length="1145">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1348" g_stop="1445" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="224" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1446" i_stop="1765" i_length="320">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1766" g_stop="2039" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="498" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E333830" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77" e_stop="202"/>
          <exon e_start="1348" e_stop="1445"/>
          <exon e_start="1766" e_stop="2039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAGAGAGAGAAGGGTAGCTCAAGTTTTGCTTTTGGGTTTCTTGTTGGACTTGGCTTTTTGGCTTTGGTTTCAGCTTTTTCTCTGAAAGGGGGTTTTAATGGAGGACTTTAAACATAACTTGAGGTATTTGGGGTTTCTATCTTTCATAAATTAATTTACTTTCTGTAGACTCTGCAAGTTTGGATGGTGATTTTAGGGCATAAAAATGTGTTCTTTACTCCTTTGTGAACTAAAAATTTGATTTTTATTTTTGTGTGTCTTTATATGTGGTGTAGAATTTGGGGGTTTGTTTTTTGATTTTGATTTTATAATTTCTTGATATTATTTGTCTGTTACATTCTTGGTAGTTGTCAAGGAAATAAGGACAAAACAACAAATTTCATCATCAGAATGTAATTTTAGCATCTATTTGTAAAAAAAATATCTATTTTTTTCTGCCCCTTGTGTTTCTCTCTTCTGATCTCATCACCATCTTGAAGAAGGTTGAAAAGCAGCAAGGAATTTATTTTGTTTTTGAAAAAAAAGGAAGAGTATTATGAAATCATCTGGATGATGATGATGATGACATGAACTTGTGTGTTATTGTCTTTAGCTAGTTTAAAAATTGGACCTTTCTTTAGTTTGATTCCTTCTTGTTCTTGAAGTTTGAATTTTAAAGTCAACTCAAAGAATGAAATATCTAGAAAAGAAATTAAAGGGACCTAAAAACTAAGTTGGACAGTTTCTTCACTTTCGACGTTGCACCCATGCCGGATTATCCAAAAATACACTATTTTTGAAGAAACTTTTAGAGATTTGGACACATTTTTGAAGAGTTTGAGCAACATAGACTAAAAATTCATTTCCCTGTTTGCCTTTTCCTTTATTCATTTTTTGGTTTTCCCATTTCTATGTGGTGAATAATTTTCCTCTCCCTTGATCAACTTATGACAGCTAAATGTGTGAATCCCAAATTTGAACTTATGGAAATATCTTCTTTAAATAATACTGATGACTTTACTTCAAGATGCTTATCAACAAGGGGACCTAACTGAGTAAATTAGATGATTTGCAAATTTTTGATGTATTTGGTTTTAGGTGCGCAATCTATGTTTTTTATGGAGTGCTTGCGTTGCATTCTCCGAGGCGGCTCGAAATGCCTCTATCTTGGGTTTCGTTCTAGAATATCTCTGTTCAATACAATGAGTGTATGAAGTTGCTTTCGCACTGCATGTGTTCAATTAAGTTCTTTTTGAATGACAATTACGTTAAGTTTCCTTCTCTTTCAGGGTGACACAGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTATGTAAGTTTTAAAAGTTTGGTTTCTTGAACTTGATATTCTCATATTACTTGTATCTGTCCCAGAAGTTGTTATTTTATGATGAAATAAACCAACTTCAATAATTGATGTAGTTTCTGTCAATCTAACTACTAATCCTGGTTGAGAATTGTGTTTATAAAGTGGACCAAGGGTGAACTAAGTATTTGGAAAAATTCAGCTCTGGCCTGATTTCCTTAAATATTCCCTTACAAATCATACTAAGATGGTGGGAAGAACTTGCTGGATATCTATGCTTCTAACATTATTATACAATCCTTAGCTAAGTTGGATGATTGTTACAGGGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTCTC</genome_strand>
        <mrna_strand>TTCTAGAGAGAGAAGGGTAGCTCAAGTTTTGCTTTTGGGTTTCTTGTTGGACTTGGCTTTTTGGCTTTGGTTTCAGCTTTTTCTCTGAAAGGGGGTTTTAATGGAGGACTTTAAACATAACTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACACAGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTAT................................................................................................................................................................................................................................................................................................................................GGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340917" ref_strand="+" ref_description="SGN-E340917 [cTOF-5-M21]">
      <seq>agaagggtagctcaagttttgcttttgggtttcttgttggacttggctttttggctttggtttcagctttttctctgaaagggggttttaatggaggactttaaacataacttgagggtgacacagtaatgctagaaacatgggggaaaaaggcagttggttttatgccctcaaaagggtttttacgtgtaactccaagaagaagtctgcctatggatcagggaagaaaactgcaaaggaaaagaagaagggtcgtagaatactgaggcatggagagttcaaatcattcctcttcagagaaccaagcagtattgagaaaatactgggtgaggttgatgatcagaacctacttgttaggcctcctacttctgaacaatctggcattccatctgcattccctgtggcaccaacttctccaagaatcaattcacctagagatgcgtctcctcagagttcttatagggctacatctcctggtgtcacttctccgagggtcgcctctccaagggttgtctctcctaaggcagcttctccaaaggttacctctcccaaggaagcttctccgaaggttacatctcccagggaagcttatccaaaggctacctctgctagtgctccttccctaaggctctctctcctagggaagcttctccaaaggcgaactctgctagtgctccttcccagaaagctactgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="2441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87" g_stop="202" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="203" i_stop="1347" i_length="1145">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1348" g_stop="1445" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="214" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1446" i_stop="1765" i_length="320">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1766" g_stop="2249" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="697" r_length="483" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E340917" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87" e_stop="202"/>
          <exon e_start="1348" e_stop="1445"/>
          <exon e_start="1766" e_stop="2249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGGTAGCTCAAGTTTTGCTTTTGGGTTTCTTGTTGGACTTGGCTTTTTGGCTTTGGTTTCAGCTTTTTCTCTGAAAGGGGGTTTTAATGGAGGACTTTAAACATAACTTGAGGTATTTGGGGTTTCTATCTTTCATAAATTAATTTACTTTCTGTAGACTCTGCAAGTTTGGATGGTGATTTTAGGGCATAAAAATGTGTTCTTTACTCCTTTGTGAACTAAAAATTTGATTTTTATTTTTGTGTGTCTTTATATGTGGTGTAGAATTTGGGGGTTTGTTTTTTGATTTTGATTTTATAATTTCTTGATATTATTTGTCTGTTACATTCTTGGTAGTTGTCAAGGAAATAAGGACAAAACAACAAATTTCATCATCAGAATGTAATTTTAGCATCTATTTGTAAAAAAAATATCTATTTTTTTCTGCCCCTTGTGTTTCTCTCTTCTGATCTCATCACCATCTTGAAGAAGGTTGAAAAGCAGCAAGGAATTTATTTTGTTTTTGAAAAAAAAGGAAGAGTATTATGAAATCATCTGGATGATGATGATGATGACATGAACTTGTGTGTTATTGTCTTTAGCTAGTTTAAAAATTGGACCTTTCTTTAGTTTGATTCCTTCTTGTTCTTGAAGTTTGAATTTTAAAGTCAACTCAAAGAATGAAATATCTAGAAAAGAAATTAAAGGGACCTAAAAACTAAGTTGGACAGTTTCTTCACTTTCGACGTTGCACCCATGCCGGATTATCCAAAAATACACTATTTTTGAAGAAACTTTTAGAGATTTGGACACATTTTTGAAGAGTTTGAGCAACATAGACTAAAAATTCATTTCCCTGTTTGCCTTTTCCTTTATTCATTTTTTGGTTTTCCCATTTCTATGTGGTGAATAATTTTCCTCTCCCTTGATCAACTTATGACAGCTAAATGTGTGAATCCCAAATTTGAACTTATGGAAATATCTTCTTTAAATAATACTGATGACTTTACTTCAAGATGCTTATCAACAAGGGGACCTAACTGAGTAAATTAGATGATTTGCAAATTTTTGATGTATTTGGTTTTAGGTGCGCAATCTATGTTTTTTATGGAGTGCTTGCGTTGCATTCTCCGAGGCGGCTCGAAATGCCTCTATCTTGGGTTTCGTTCTAGAATATCTCTGTTCAATACAATGAGTGTATGAAGTTGCTTTCGCACTGCATGTGTTCAATTAAGTTCTTTTTGAATGACAATTACGTTAAGTTTCCTTCTCTTTCAGGGTGACACAGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTATGTAAGTTTTAAAAGTTTGGTTTCTTGAACTTGATATTCTCATATTACTTGTATCTGTCCCAGAAGTTGTTATTTTATGATGAAATAAACCAACTTCAATAATTGATGTAGTTTCTGTCAATCTAACTACTAATCCTGGTTGAGAATTGTGTTTATAAAGTGGACCAAGGGTGAACTAAGTATTTGGAAAAATTCAGCTCTGGCCTGATTTCCTTAAATATTCCCTTACAAATCATACTAAGATGGTGGGAAGAACTTGCTGGATATCTATGCTTCTAACATTATTATACAATCCTTAGCTAAGTTGGATGATTGTTACAGGGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTCTCCGAGGGTCGCCTCTCCAAGGGTTGTCTCTCCTAAGGCAGCTTCTCCAAAGGTTACCTCTCCCAAGGAAGCTTCTCCGAAGGTTACATCTCCCAGGGAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTATTT</genome_strand>
        <mrna_strand>AGAAGGGTAGCTCAAGTTTTGCTTTTGGGTTTCTTGTTGGACTTGGCTTTTTGGCTTTGGTTTCAGCTTTTTCTCTGAAAGGGGGTTTTAATGGAGGACTTTAAACATAACTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACACAGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTAT................................................................................................................................................................................................................................................................................................................................GGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTCTCCGAGGGTCGCCTCTCCAAGGGTTGTCTCTCCTAAGGCAGCTTCTCCAAAGGTTACCTCTCCCAAGGAAGCTTCTCCGAAGGTTACATCTCCCAGGGAAGCTT-ATCCAAAGGCTACCTCTGCTAGTGCTCCTTCCCTAAGGCTCTCTCTCCTAGGGAAGCTTCTCCAAAGGCGAACTCTGCTAGTGCTCCTTCCCAGAAAGCTACTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276263" ref_strand="+" ref_description="SGN-E276263 [cLEN-21-A20]">
      <seq>gaagggtagctcaagttttgcttttgggtttcttgttggacttggctttttggctttggtttcagctttttctctgaaagggggttttaatggaggactttaaacataacttgagggtgacacagtaatgctagaaacatgggggaaaaaggcagttggttttatgccctcaaaagggtttttacgtgtaactccaagaagaagtctgcctatggatcagggaagaaaactgcaaaggaaaagaagaagggtcgtagaatactgaggcatggagagttcaaatcattcctcttcagagaaccaagcagtattgagaaaatactgggtgaggttgatgatcagaacctacttgttaggcctcctacttctgaacaatctggcattccatctgcattccctgtggcaccaacttctccaagaatcaattcacctagagatgcgtctcctcagagttcttatagggctacatctcctggtgtcacttctccgagggtcgcctctccaagggttgtctctcctaaggcagcttctccaaaggttacctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="2397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88" g_stop="202" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="203" i_stop="1347" i_length="1145">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1348" g_stop="1445" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="213" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1446" i_stop="1765" i_length="320">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1766" g_stop="2097" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="545" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E276263" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88" e_stop="202"/>
          <exon e_start="1348" e_stop="1445"/>
          <exon e_start="1766" e_stop="2097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGGTAGCTCAAGTTTTGCTTTTGGGTTTCTTGTTGGACTTGGCTTTTTGGCTTTGGTTTCAGCTTTTTCTCTGAAAGGGGGTTTTAATGGAGGACTTTAAACATAACTTGAGGTATTTGGGGTTTCTATCTTTCATAAATTAATTTACTTTCTGTAGACTCTGCAAGTTTGGATGGTGATTTTAGGGCATAAAAATGTGTTCTTTACTCCTTTGTGAACTAAAAATTTGATTTTTATTTTTGTGTGTCTTTATATGTGGTGTAGAATTTGGGGGTTTGTTTTTTGATTTTGATTTTATAATTTCTTGATATTATTTGTCTGTTACATTCTTGGTAGTTGTCAAGGAAATAAGGACAAAACAACAAATTTCATCATCAGAATGTAATTTTAGCATCTATTTGTAAAAAAAATATCTATTTTTTTCTGCCCCTTGTGTTTCTCTCTTCTGATCTCATCACCATCTTGAAGAAGGTTGAAAAGCAGCAAGGAATTTATTTTGTTTTTGAAAAAAAAGGAAGAGTATTATGAAATCATCTGGATGATGATGATGATGACATGAACTTGTGTGTTATTGTCTTTAGCTAGTTTAAAAATTGGACCTTTCTTTAGTTTGATTCCTTCTTGTTCTTGAAGTTTGAATTTTAAAGTCAACTCAAAGAATGAAATATCTAGAAAAGAAATTAAAGGGACCTAAAAACTAAGTTGGACAGTTTCTTCACTTTCGACGTTGCACCCATGCCGGATTATCCAAAAATACACTATTTTTGAAGAAACTTTTAGAGATTTGGACACATTTTTGAAGAGTTTGAGCAACATAGACTAAAAATTCATTTCCCTGTTTGCCTTTTCCTTTATTCATTTTTTGGTTTTCCCATTTCTATGTGGTGAATAATTTTCCTCTCCCTTGATCAACTTATGACAGCTAAATGTGTGAATCCCAAATTTGAACTTATGGAAATATCTTCTTTAAATAATACTGATGACTTTACTTCAAGATGCTTATCAACAAGGGGACCTAACTGAGTAAATTAGATGATTTGCAAATTTTTGATGTATTTGGTTTTAGGTGCGCAATCTATGTTTTTTATGGAGTGCTTGCGTTGCATTCTCCGAGGCGGCTCGAAATGCCTCTATCTTGGGTTTCGTTCTAGAATATCTCTGTTCAATACAATGAGTGTATGAAGTTGCTTTCGCACTGCATGTGTTCAATTAAGTTCTTTTTGAATGACAATTACGTTAAGTTTCCTTCTCTTTCAGGGTGACACAGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTATGTAAGTTTTAAAAGTTTGGTTTCTTGAACTTGATATTCTCATATTACTTGTATCTGTCCCAGAAGTTGTTATTTTATGATGAAATAAACCAACTTCAATAATTGATGTAGTTTCTGTCAATCTAACTACTAATCCTGGTTGAGAATTGTGTTTATAAAGTGGACCAAGGGTGAACTAAGTATTTGGAAAAATTCAGCTCTGGCCTGATTTCCTTAAATATTCCCTTACAAATCATACTAAGATGGTGGGAAGAACTTGCTGGATATCTATGCTTCTAACATTATTATACAATCCTTAGCTAAGTTGGATGATTGTTACAGGGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTCTCCGAGGGTCGCCTCTCCAAGGGTTGTCTCTCCTAAGGCAGCTTCTCCAAAGGTTACCTC</genome_strand>
        <mrna_strand>GAAGGGTAGCTCAAGTTTTGCTTTTGGGTTTCTTGTTGGACTTGGCTTTTTGGCTTTGGTTTCAGCTTTTTCTCTGAAAGGGGGTTTTAATGGAGGACTTTAAACATAACTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACACAGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTAT................................................................................................................................................................................................................................................................................................................................GGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTCTCCGAGGGTCGCCTCTCCAAGGGTTGTCTCTCCTAAGGCAGCTTCTCCAAAGGTTACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251134" ref_strand="+" ref_description="SGN-E251134 [cLEG-10-O11]">
      <seq>aagggtagctcaagttttgcttttgggtttcttgttggacttggctttttggctttggttgcagctttttctctgaaagggggttttaatggaggactttaaacataacttgagggtgacacagtaatgctagaaacatgggggaaaaaggcagttggttttatgccctcaaaagggtttttacgtgtaactccaagaagaagtctgcctatggatcagggaagaaaactgcaaaggaaaagaagaagggtcgtagaatactgaggcatggagagttcaaatcattcctcttcagagaaccaagcagtattgagaaaatactgggtgaggttgatgatcagaacctacttgttaggcctcctacttctgaacaatctggcattccatctgcattccctgtggcaccaacttctccaagaatcaattcacctagagatgcgtctcctcagagttcttatagggctacatctcctggtgtcacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="2337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89" g_stop="202" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="203" i_stop="1347" i_length="1145">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1348" g_stop="1445" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="212" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1446" i_stop="1765" i_length="320">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1766" g_stop="2037" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="484" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E251134" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89" e_stop="202"/>
          <exon e_start="1348" e_stop="1445"/>
          <exon e_start="1766" e_stop="2037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGTAGCTCAAGTTTTGCTTTTGGGTTTCTTGTTGGACTTGGCTTTTTGGCTTTGGTTTCAGCTTTTTCTCTGAAAGGGGGTTTTAATGGAGGACTTTAAACATAACTTGAGGTATTTGGGGTTTCTATCTTTCATAAATTAATTTACTTTCTGTAGACTCTGCAAGTTTGGATGGTGATTTTAGGGCATAAAAATGTGTTCTTTACTCCTTTGTGAACTAAAAATTTGATTTTTATTTTTGTGTGTCTTTATATGTGGTGTAGAATTTGGGGGTTTGTTTTTTGATTTTGATTTTATAATTTCTTGATATTATTTGTCTGTTACATTCTTGGTAGTTGTCAAGGAAATAAGGACAAAACAACAAATTTCATCATCAGAATGTAATTTTAGCATCTATTTGTAAAAAAAATATCTATTTTTTTCTGCCCCTTGTGTTTCTCTCTTCTGATCTCATCACCATCTTGAAGAAGGTTGAAAAGCAGCAAGGAATTTATTTTGTTTTTGAAAAAAAAGGAAGAGTATTATGAAATCATCTGGATGATGATGATGATGACATGAACTTGTGTGTTATTGTCTTTAGCTAGTTTAAAAATTGGACCTTTCTTTAGTTTGATTCCTTCTTGTTCTTGAAGTTTGAATTTTAAAGTCAACTCAAAGAATGAAATATCTAGAAAAGAAATTAAAGGGACCTAAAAACTAAGTTGGACAGTTTCTTCACTTTCGACGTTGCACCCATGCCGGATTATCCAAAAATACACTATTTTTGAAGAAACTTTTAGAGATTTGGACACATTTTTGAAGAGTTTGAGCAACATAGACTAAAAATTCATTTCCCTGTTTGCCTTTTCCTTTATTCATTTTTTGGTTTTCCCATTTCTATGTGGTGAATAATTTTCCTCTCCCTTGATCAACTTATGACAGCTAAATGTGTGAATCCCAAATTTGAACTTATGGAAATATCTTCTTTAAATAATACTGATGACTTTACTTCAAGATGCTTATCAACAAGGGGACCTAACTGAGTAAATTAGATGATTTGCAAATTTTTGATGTATTTGGTTTTAGGTGCGCAATCTATGTTTTTTATGGAGTGCTTGCGTTGCATTCTCCGAGGCGGCTCGAAATGCCTCTATCTTGGGTTTCGTTCTAGAATATCTCTGTTCAATACAATGAGTGTATGAAGTTGCTTTCGCACTGCATGTGTTCAATTAAGTTCTTTTTGAATGACAATTACGTTAAGTTTCCTTCTCTTTCAGGGTGACACAGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTATGTAAGTTTTAAAAGTTTGGTTTCTTGAACTTGATATTCTCATATTACTTGTATCTGTCCCAGAAGTTGTTATTTTATGATGAAATAAACCAACTTCAATAATTGATGTAGTTTCTGTCAATCTAACTACTAATCCTGGTTGAGAATTGTGTTTATAAAGTGGACCAAGGGTGAACTAAGTATTTGGAAAAATTCAGCTCTGGCCTGATTTCCTTAAATATTCCCTTACAAATCATACTAAGATGGTGGGAAGAACTTGCTGGATATCTATGCTTCTAACATTATTATACAATCCTTAGCTAAGTTGGATGATTGTTACAGGGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTC</genome_strand>
        <mrna_strand>AAGGGTAGCTCAAGTTTTGCTTTTGGGTTTCTTGTTGGACTTGGCTTTTTGGCTTTGGTTGCAGCTTTTTCTCTGAAAGGGGGTTTTAATGGAGGACTTTAAACATAACTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACACAGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTAT................................................................................................................................................................................................................................................................................................................................GGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211310" ref_strand="+" ref_description="SGN-E211310 [cLEC-70-H15]">
      <seq>ctttggtttcagctttttctctgaaagggggttttaatggaggactttaaacataacttgagggtgacacagtaatgctagaaacatgggggaaaaaggcagttggttttatgccctcaaaagggtttttacgtgtaactccaagaagaagtctgcctatggatcagggaagaaaactgcaaaggaaaagaagaagggtcgtagaatactgaggcatggagagttcaaatcattcctcttcagagaaccaagcagtattgagaaaatactgggtgaggttgatgatcagaacctacttgttaggcctcctacttctgaacaatctggcattccatctgcattccctgtggcaccaacttctccaagaatcaattcacctagagatgcgtctcctcagagttcttatagggctacatctcctggtgtcacttctccgagggtcgcctctccaagggttgtctctcctaaggcagcttctccaaaggttacctctcccaaggaagcttctccgaangttacatctcccagggaagcttatccaaaggctacctctgctagtgctccttccctaaaggctctctctcctanggaagcttctccaaaggcgaactctgctagtgctccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="2441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141" g_stop="202" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="203" i_stop="1347" i_length="1145">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1348" g_stop="1445" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="160" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1446" i_stop="1765" i_length="320">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1766" g_stop="2232" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="627" r_length="467" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E211310" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141" e_stop="202"/>
          <exon e_start="1348" e_stop="1445"/>
          <exon e_start="1766" e_stop="2232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGTTTCAGCTTTTTCTCTGAAAGGGGGTTTTAATGGAGGACTTTAAACATAACTTGAGGTATTTGGGGTTTCTATCTTTCATAAATTAATTTACTTTCTGTAGACTCTGCAAGTTTGGATGGTGATTTTAGGGCATAAAAATGTGTTCTTTACTCCTTTGTGAACTAAAAATTTGATTTTTATTTTTGTGTGTCTTTATATGTGGTGTAGAATTTGGGGGTTTGTTTTTTGATTTTGATTTTATAATTTCTTGATATTATTTGTCTGTTACATTCTTGGTAGTTGTCAAGGAAATAAGGACAAAACAACAAATTTCATCATCAGAATGTAATTTTAGCATCTATTTGTAAAAAAAATATCTATTTTTTTCTGCCCCTTGTGTTTCTCTCTTCTGATCTCATCACCATCTTGAAGAAGGTTGAAAAGCAGCAAGGAATTTATTTTGTTTTTGAAAAAAAAGGAAGAGTATTATGAAATCATCTGGATGATGATGATGATGACATGAACTTGTGTGTTATTGTCTTTAGCTAGTTTAAAAATTGGACCTTTCTTTAGTTTGATTCCTTCTTGTTCTTGAAGTTTGAATTTTAAAGTCAACTCAAAGAATGAAATATCTAGAAAAGAAATTAAAGGGACCTAAAAACTAAGTTGGACAGTTTCTTCACTTTCGACGTTGCACCCATGCCGGATTATCCAAAAATACACTATTTTTGAAGAAACTTTTAGAGATTTGGACACATTTTTGAAGAGTTTGAGCAACATAGACTAAAAATTCATTTCCCTGTTTGCCTTTTCCTTTATTCATTTTTTGGTTTTCCCATTTCTATGTGGTGAATAATTTTCCTCTCCCTTGATCAACTTATGACAGCTAAATGTGTGAATCCCAAATTTGAACTTATGGAAATATCTTCTTTAAATAATACTGATGACTTTACTTCAAGATGCTTATCAACAAGGGGACCTAACTGAGTAAATTAGATGATTTGCAAATTTTTGATGTATTTGGTTTTAGGTGCGCAATCTATGTTTTTTATGGAGTGCTTGCGTTGCATTCTCCGAGGCGGCTCGAAATGCCTCTATCTTGGGTTTCGTTCTAGAATATCTCTGTTCAATACAATGAGTGTATGAAGTTGCTTTCGCACTGCATGTGTTCAATTAAGTTCTTTTTGAATGACAATTACGTTAAGTTTCCTTCTCTTTCAGGGTGACACAGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTATGTAAGTTTTAAAAGTTTGGTTTCTTGAACTTGATATTCTCATATTACTTGTATCTGTCCCAGAAGTTGTTATTTTATGATGAAATAAACCAACTTCAATAATTGATGTAGTTTCTGTCAATCTAACTACTAATCCTGGTTGAGAATTGTGTTTATAAAGTGGACCAAGGGTGAACTAAGTATTTGGAAAAATTCAGCTCTGGCCTGATTTCCTTAAATATTCCCTTACAAATCATACTAAGATGGTGGGAAGAACTTGCTGGATATCTATGCTTCTAACATTATTATACAATCCTTAGCTAAGTTGGATGATTGTTACAGGGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTCTCCGAGGGTCGCCTCTCCAAGGGTTGTCTCTCCTAAGGCAGCTTCTCCAAAGGTTACCTCTCCCAAGGAAGCTTCTCCGAAGGTTACATCTCCCAGGGAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>CTTTGGTTTCAGCTTTTTCTCTGAAAGGGGGTTTTAATGGAGGACTTTAAACATAACTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACACAGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTAT................................................................................................................................................................................................................................................................................................................................GGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTCTCCGAGGGTCGCCTCTCCAAGGGTTGTCTCTCCTAAGGCAGCTTCTCCAAAGGTTACCTCTCCCAAGGAAGCTTCTCCGAANGTTACATCTCCCAGGGAAGCTTATCCAAAGGCTACCTCTGCTAGTGCTCCTTCCCTAAAGGCTCTCTCTCCTANGGAAGCTTCTCCAAAGGCGAACTCTGCTAGTGCTCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332773" ref_strand="+" ref_description="SGN-E332773 [cTOD-18-D3]">
      <seq>tgaaagggggttttaatggaggactttaaacataacttgagggtgacacagtaatgctagaaacatgggggaaaaaggcagttggttttatgccctcaaaagggtttttacgtgtaactccaagaagaagtctgcctatggatcagggaagaaaactgcaaaggaaaagaagaagggtcgtagaatactgaagcatggagagttcaaatcattcctcttcagagaccaagcagtattgagaaaatactgggtgaggttgatgatcagaacctacttgttaggcctcctacttctgaacaatctggcattccatctgcattccctgtggcaccaacttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="2267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162" g_stop="202" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="203" i_stop="1347" i_length="1145">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1348" g_stop="1445" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="139" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1446" i_stop="1765" i_length="320">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1766" g_stop="1967" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="340" r_length="201" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E332773" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162" e_stop="202"/>
          <exon e_start="1348" e_stop="1445"/>
          <exon e_start="1766" e_stop="1967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGGGGGTTTTAATGGAGGACTTTAAACATAACTTGAGGTATTTGGGGTTTCTATCTTTCATAAATTAATTTACTTTCTGTAGACTCTGCAAGTTTGGATGGTGATTTTAGGGCATAAAAATGTGTTCTTTACTCCTTTGTGAACTAAAAATTTGATTTTTATTTTTGTGTGTCTTTATATGTGGTGTAGAATTTGGGGGTTTGTTTTTTGATTTTGATTTTATAATTTCTTGATATTATTTGTCTGTTACATTCTTGGTAGTTGTCAAGGAAATAAGGACAAAACAACAAATTTCATCATCAGAATGTAATTTTAGCATCTATTTGTAAAAAAAATATCTATTTTTTTCTGCCCCTTGTGTTTCTCTCTTCTGATCTCATCACCATCTTGAAGAAGGTTGAAAAGCAGCAAGGAATTTATTTTGTTTTTGAAAAAAAAGGAAGAGTATTATGAAATCATCTGGATGATGATGATGATGACATGAACTTGTGTGTTATTGTCTTTAGCTAGTTTAAAAATTGGACCTTTCTTTAGTTTGATTCCTTCTTGTTCTTGAAGTTTGAATTTTAAAGTCAACTCAAAGAATGAAATATCTAGAAAAGAAATTAAAGGGACCTAAAAACTAAGTTGGACAGTTTCTTCACTTTCGACGTTGCACCCATGCCGGATTATCCAAAAATACACTATTTTTGAAGAAACTTTTAGAGATTTGGACACATTTTTGAAGAGTTTGAGCAACATAGACTAAAAATTCATTTCCCTGTTTGCCTTTTCCTTTATTCATTTTTTGGTTTTCCCATTTCTATGTGGTGAATAATTTTCCTCTCCCTTGATCAACTTATGACAGCTAAATGTGTGAATCCCAAATTTGAACTTATGGAAATATCTTCTTTAAATAATACTGATGACTTTACTTCAAGATGCTTATCAACAAGGGGACCTAACTGAGTAAATTAGATGATTTGCAAATTTTTGATGTATTTGGTTTTAGGTGCGCAATCTATGTTTTTTATGGAGTGCTTGCGTTGCATTCTCCGAGGCGGCTCGAAATGCCTCTATCTTGGGTTTCGTTCTAGAATATCTCTGTTCAATACAATGAGTGTATGAAGTTGCTTTCGCACTGCATGTGTTCAATTAAGTTCTTTTTGAATGACAATTACGTTAAGTTTCCTTCTCTTTCAGGGTGACACAGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTATGTAAGTTTTAAAAGTTTGGTTTCTTGAACTTGATATTCTCATATTACTTGTATCTGTCCCAGAAGTTGTTATTTTATGATGAAATAAACCAACTTCAATAATTGATGTAGTTTCTGTCAATCTAACTACTAATCCTGGTTGAGAATTGTGTTTATAAAGTGGACCAAGGGTGAACTAAGTATTTGGAAAAATTCAGCTCTGGCCTGATTTCCTTAAATATTCCCTTACAAATCATACTAAGATGGTGGGAAGAACTTGCTGGATATCTATGCTTCTAACATTATTATACAATCCTTAGCTAAGTTGGATGATTGTTACAGGGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTC</genome_strand>
        <mrna_strand>TGAAAGGGGGTTTTAATGGAGGACTTTAAACATAACTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACACAGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTAT................................................................................................................................................................................................................................................................................................................................GGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAAGCATGGAGAGTTCAAATCATTCCTCTTCAGAG-ACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315137" ref_strand="+" ref_description="SGN-E315137 [cTOA-24-G16]">
      <seq>taaattaatttactttctgtagactctgcaagtttggatggtgattttagggcataaaaatgtgttctttactcctttgtgaactaaaaatttgatttttatttttgtgtgtctttatatgtggtgtagaatttgggggtttgttttttgattttgattttataatttcttgatattatttgtctgttacattcttggtagttgtcaaggaaataaggacaaaacaacaaatttcatcatcagaatgtaattttagcatctatttgtaaaaaaaatatctatttttttctgccccttgtgtttctctcttctgatctcatcaccatcttgaagaaggttgaaaagcagcaaggaatttattttgtttttgaaaaaaaaggaagagtattatgaaatcatctggatgatgatgatgatgacatgaacttgtgtgttattgtctttagctagtttaaaaattggacctttctttagtttgattccttcttgttcttgaagtttgaattttaaagtcaactcaaagaatgaaatatctagaaaagaaattaaagggacctaaaaactaagttggacagtttcttcactttcgacgttgcacccatgccggattatccaaaaatacactatttttgaagaaacttttagagatttggacacattttttgaagaagtttgagcacatagactaaaaattcatttccctgtttgccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="1237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="226" g_stop="937" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E315137" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="226" e_stop="937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTAATTTACTTTCTGTAGACTCTGCAAGTTTGGATGGTGATTTTAGGGCATAAAAATGTGTTCTTTACTCCTTTGTGAACTAAAAATTTGATTTTTATTTTTGTGTGTCTTTATATGTGGTGTAGAATTTGGGGGTTTGTTTTTTGATTTTGATTTTATAATTTCTTGATATTATTTGTCTGTTACATTCTTGGTAGTTGTCAAGGAAATAAGGACAAAACAACAAATTTCATCATCAGAATGTAATTTTAGCATCTATTTGTAAAAAAAATATCTATTTTTTTCTGCCCCTTGTGTTTCTCTCTTCTGATCTCATCACCATCTTGAAGAAGGTTGAAAAGCAGCAAGGAATTTATTTTGTTTTTGAAAAAAAAGGAAGAGTATTATGAAATCATCTGGATGATGATGATGATGACATGAACTTGTGTGTTATTGTCTTTAGCTAGTTTAAAAATTGGACCTTTCTTTAGTTTGATTCCTTCTTGTTCTTGAAGTTTGAATTTTAAAGTCAACTCAAAGAATGAAATATCTAGAAAAGAAATTAAAGGGACCTAAAAACTAAGTTGGACAGTTTCTTCACTTTCGACGTTGCACCCATGCCGGATTATCCAAAAATACACTATTTTTGAAGAAACTTTTAGAGATTTGGACACA-TTTTTGAAG-AGTTTGAGCAACATAGACTAAAAATTCATTTCCCTGTTTGCCTTT</genome_strand>
        <mrna_strand>TAAATTAATTTACTTTCTGTAGACTCTGCAAGTTTGGATGGTGATTTTAGGGCATAAAAATGTGTTCTTTACTCCTTTGTGAACTAAAAATTTGATTTTTATTTTTGTGTGTCTTTATATGTGGTGTAGAATTTGGGGGTTTGTTTTTTGATTTTGATTTTATAATTTCTTGATATTATTTGTCTGTTACATTCTTGGTAGTTGTCAAGGAAATAAGGACAAAACAACAAATTTCATCATCAGAATGTAATTTTAGCATCTATTTGTAAAAAAAATATCTATTTTTTTCTGCCCCTTGTGTTTCTCTCTTCTGATCTCATCACCATCTTGAAGAAGGTTGAAAAGCAGCAAGGAATTTATTTTGTTTTTGAAAAAAAAGGAAGAGTATTATGAAATCATCTGGATGATGATGATGATGACATGAACTTGTGTGTTATTGTCTTTAGCTAGTTTAAAAATTGGACCTTTCTTTAGTTTGATTCCTTCTTGTTCTTGAAGTTTGAATTTTAAAGTCAACTCAAAGAATGAAATATCTAGAAAAGAAATTAAAGGGACCTAAAAACTAAGTTGGACAGTTTCTTCACTTTCGACGTTGCACCCATGCCGGATTATCCAAAAATACACTATTTTTGAAGAAACTTTTAGAGATTTGGACACATTTTTTGAAGAAGTTTGAGC-ACATAGACTAAAAATTCATTTCCCTGTTTGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="-" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4671" stop="3588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4371" g_stop="4186" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4185" i_stop="4154" i_length="32">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4153" g_stop="3888" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="450" r_length="264" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4371" e_stop="4186"/>
          <exon e_start="4153" e_stop="3888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACATAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCGTTGGTCTTTTTCTCTGCAATATTTGTATAAAATTTGCATTTGTCTACAATTAAATTGAAGTAAAATGTTTGTAAATTGTATATTTAAGTGTATAACACGAAGATATATGTTTTTTCATGTATATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAAAAATTATACACTTTTGTGTATAAAGCGAGAGAGGTGAGCGAGAATGGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGGCGCCTGACAAACTTTGGCTAAAGTTTGCTATGAAGCAAAATTAAATCAAACCCTAGCTACTCCATTTATTTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTT................................GAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAAT-GGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTTA-GTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="-" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4672" stop="3742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4372" g_stop="4186" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4185" i_stop="4154" i_length="32">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4153" g_stop="4016" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="325" r_length="138" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4372" e_stop="4186"/>
          <exon e_start="4153" e_stop="4016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACATAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCGTTGGTCTTTTTCTCTGCAATATTTGTATAAAATTTGCATTTGTCTACAATTAAATTGAAGTAAAATGTTTGTAAATTGTATATTTAAGTGTATAACACGAAGATATATGTTTTTTCATGTATATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAAAAATTATACACTTTTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTT................................GAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="-" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4672" stop="3920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4372" g_stop="4220" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="-" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4372" e_stop="4220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACATAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11645" stop="12955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11945" g_stop="12655" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11945" e_stop="12655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCTTTGACAAATCAACGGTAGTAGCTAGCTAGACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCATTGTCTCAATCTTAGAAGGATCCACCATCACCCCGTCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCCAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGTTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTAATACAAATTCGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCTCTTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCTATGCGAGGAATGGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGATATTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCAC-AA-ATAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAACCTTTACTTAACAACTCTTGAAGTTGGTCCTTTAACTCTCTTAACTCCACGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGC-TCACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11645" stop="12840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11945" g_stop="12540" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11945" e_stop="12540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCTTTGACAAATCAACGGTAGTAGCTAGCTAGACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCATTGTCTCAATCTTAGAAGGATCCACCATCACCCCGTCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCCAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGTTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTAATACAAATTCGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCTCTTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCTATGCGAGGAATGGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGATATTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11645" stop="12770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11945" g_stop="12470" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11945" e_stop="12470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCTTTGACAAATCAACGGTAGTAGCTAGCTAGACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCATTGTCTCAATCTTAGAAGGATCCACCATCACCCCGTCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCCAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGTTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTAATACAAATTCGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCTCTTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCTATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11716" stop="12992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12016" g_stop="12693" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12016" e_stop="12693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCATTGTCTCAATCTTAGAAGGATCCACCATCACCCCGTCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCCAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGTTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTAATACAAATTCGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCTCTTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCTATGCGAGGAATGGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGATATTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAA--TAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAACCTTTACTTAACAACTCTTGAAGTTGGTCCTTTAACTCTCTTAACTCCACGGGATACATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11716" stop="12674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12016" g_stop="12374" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12016" e_stop="12374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCATTGTCTCAATCTTAGAAGGATCCACCATCACCCCGTCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCCAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGTTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTAATACAAATTCGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="-" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14258" stop="12253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13958" g_stop="13787" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13786" i_stop="13043" i_length="744">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13042" g_stop="12564" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="652" r_length="479" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13958" e_stop="13787"/>
          <exon e_start="13042" e_stop="12564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCAGGTATGCCAC-CAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAACTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTTCAAGAAGTGGTAGACTTTGTGATAGAGGTGGAGGGAGTGAAGCCAGATGACTTCACCATGGCATCGACATCAAATAGGTTTCGAAAGGGAGGTGAGTTTAATGGCTCTTACTCTAGAGGACAAGGTTCAGGAGGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCCATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGAGACTGGAGACATTAGGAGGAATTGTCCGAAACAGAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCCTTATTCTGGAGGACGTGGTGGCCGAGGTAATGGTGGTCATCAAAACGGCCGGGGTGACGGACAAATGGGAACTACTGCAGCGCAACATGGTAGGGGCAACGGGCAAGCAGGTGATAGGTCCCATTGTTACGCTTTTCCTGGGCGGTCGGAAGCGGAGACATCAGATGCTGTTATCACATGTAATCTTTTGGTTTGTGATTGTATGGCTTCTGTATTATTTGACCCTGGCTCTACATTTTCATATGTATCCTCCGCATTTGCTAATGGTCTTAATTTACATTGTGAATTGCTTGACATACCTATTCGTGTGTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAAGTATATAGGTCTTGTTTGATAACTTTTGTGGAGAGCAATACTTATGTAGACTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCTAAATTTTGCGATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCTTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCATATCATCTTCTTTCTTCGTGCTAAGAAAATGGTTAGTAAGGTTTGTTTAGCGTTCTTGGCACATCTCAGGGATGATACTACCTAAGTACCTCCAATTGAGTCGGTCTCGATAGTTCGTGAGTTTTTAGATGTGTTTCCCGCAGACCTTCCGGGTATGCCACCGGATAGAGATATTTACTTCTGCATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGTATCCCGTGGAGTTAAGAGAGTTAAAGGACCAACTTCAAGAGTTGTTAAGTAAAGGTTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTT</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12635" stop="13565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12935" g_stop="13265" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12935" e_stop="13265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAAGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTTAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCTCCACAAAAGTTATCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGACACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAGGATACATATGAAAATGTAGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E741064" ref_strand="+" ref_description="SGN-E741064 [GI|2213883]">
      <seq>tctcttacttgaattttcagtctcttctcccagccgccattaaaaccagcactcgcaaactccaatttctcttctccggcaatggcgtctatcaccgcaaatcatccaatctccggtaaaccattaatctcattccgtcccaaaaaccctttacttcaaacccaaactctcttcaatttcaaaccatcaatctccaagcactccaattcttcattttccattcccgttgtccgctgctcaatccgccgtataccggaatatactccgagtcacattcccgatccaaactacgtccggatattcgacaccactctccgtgatggcgaacaatcaccaggggctacaatgactacaaaggagaaactggatgttgcgcgtcagtcagctaagcttggtgttgatataattgaggctggttttcctgcttcttctgaagctgatcttgaagctgtgaaattgatagctaaggaagttgggaatggtgtttatgaagaggaatacgttccggttatttgtggattggcgaggtgtaataagaaggatattgataaggcgtgggaggctgtgaagtatgctaagaaaccgaggattcatacgtttattgctacaagtgaggtacatatgaattataagctgaaaatgagtagagatcaagttgttgagaaagctaggagtatggtggcttatgcaaggagtattgggtgtgaggatgttgaatttagccctgaagatgctggaagatctgatccggagtttctttatcatatcttgggagaggttatcaaagctggggcaacaacccttaacatccctgatactgttggatacactgtacccgaagaatttggacaattgattgctaaaataaaagcgaataccccaggagttgaagatgtgatcatttcaacacactgccagaacgatcttgggctttctactgccaacaccttagctggagcatgtgcaggtgcaagacaattggaagtgaccatcaatggaattggtgaaagagctggaaatgcttctttagaggaggttgtaatggccttaaagtgtcgtggagagcaagtactaggtggcctatatacagggattaatacacaacatatactcatgtcaagcaagatggtagagggtatttcgggacttcatgtgcaaccacacaaggccattgttggagctaatgcttttgttcatgaaagtggcatccatcaggatggaatgttaaaacacaaagatacatatgagattatatctcctgaagatattgggcttaatcgtgctaatgaatctggtattgtcttcgggaaactcagtggggtcatgctttgcaagccaaaaatgcttgagcttggatacgagattgagggaaaagaacttgatgacctgttctggcgattcaaatctgtggctgagaagaaaaagaaaattacagatgatgacctggtagcactgatgtcagatgaagttttccagcctcaatttgtgtggcaacttcaaaatgtacaggttacttgtggaagtcttggcctttctacagcaaccgttaagcttattgatgctgatggtcgagagcatatttcttgttctgttggaacggggccagttgacgcggcttataaggcagttgatctcattgttaaggttcctgtaacactccttgagtattccatgaatgcagtcacacaaggtatagatgctatagcttcaaccagagtcttgattcgtggagaaaatggccatacatcaacccatgccttaactggagagactgttcaccgtacatttagtggaaccggagcagatatggatattgtcatctccagtgtccgagcctatgttggtgcattgaataagatgatgagtttcagaaaattaatggcgaaaaataacaaacccgaaagcagtgcagtcatataggaacttctgtgcaaatcaaggttatggaacttttgcaactgcactggagctttgtcatttgtacaaaatgtaggaggctgttcaaagaatttgagcctgtagttttcaagaaaacaaagcttatatgtttggtagtgcttgaaaatcatttaagtttatggtgtatcagttggaacattagacacattgtccatataactttgttcatgctcccgtttgactaatttatgaatttacataccacgaagattttcgaaatgnaaaaaaaaaaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41298" stop="51779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41598" g_stop="42337" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="740" r_length="740" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42338" i_stop="43314" i_length="977">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43315" g_stop="43528" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="954" r_length="214" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43529" i_stop="43609" i_length="81">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43610" g_stop="43690" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="955" r_stop="1035" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43691" i_stop="44195" i_length="505">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44196" g_stop="44288" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1036" r_stop="1128" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44289" i_stop="44373" i_length="85">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44374" g_stop="44460" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1129" r_stop="1215" r_length="87" r_score="0.908"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44461" i_stop="47244" i_length="2784">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47245" g_stop="47345" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1216" r_stop="1316" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47346" i_stop="47810" i_length="465">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47811" g_stop="47844" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1317" r_stop="1350" r_length="34" r_score="0.912"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47845" i_stop="47921" i_length="77">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.668" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47922" g_stop="47996" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1351" r_stop="1425" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="47997" i_stop="48740" i_length="744">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="48741" g_stop="48824" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1426" r_stop="1509" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="48825" i_stop="48922" i_length="98">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.667" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="48923" g_stop="49057" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1510" r_stop="1644" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="49058" i_stop="50359" i_length="1302">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="50360" g_stop="50505" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1645" r_stop="1790" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="50506" i_stop="51087" i_length="582">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="51088" g_stop="51462" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1791" r_stop="2164" r_length="374" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2194" polyA_stop="2235"/>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E741064" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>2165</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E741064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41598" e_stop="42337"/>
          <exon e_start="43315" e_stop="43528"/>
          <exon e_start="43610" e_stop="43690"/>
          <exon e_start="44196" e_stop="44288"/>
          <exon e_start="44374" e_stop="44460"/>
          <exon e_start="47245" e_stop="47345"/>
          <exon e_start="47811" e_stop="47844"/>
          <exon e_start="47922" e_stop="47996"/>
          <exon e_start="48741" e_stop="48824"/>
          <exon e_start="48923" e_stop="49057"/>
          <exon e_start="50360" e_stop="50505"/>
          <exon e_start="51088" e_stop="51462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTACTTGAATTTTCAGTCTCTTCTCCCAGCCGCCATTAAAACCAGCACTCGCAAACTCCAATTTCTCTTCTCCGGCAATGGCGTCTATCACCGCAAATCATCCAATCTCCGGTAAACCATTAATCTCATTCCGTCCCAAAAACCCTTTACTTCAAACCCAAACTCTCTTCAATTTCAAACCATCAATCTCCAAGCACTCCAATTCTTCATTTTCCATTCCCGTTGTCCGCTGCTCAATCCGCCGTAGACCGGAATATACTCCGAGTCACATTCCCGATCCAAACTATGTCCGGATATTCGACACCACTCTCCGTGATGGCGAACAATCACCAGGGGCTACAATGACTACAAAGGAGAAACTGGATGTTGCACGTCAGTTAGCTAAGCTTGGTGTTGATATAATTGAGGCTGGTTTTCCTGCTTCTTCTGAAGCTGATCTTGAAGCTGTGAAATTGATAGCTAAGGAAGTTGGGAATGGTGTTTATGAAGAGGGATATGTTCCGGTTATTTGTGGATTGGCGAGGTGTAATAAGAAGGATATTGATAAGGCGTGGGAGGCTGTGAAGTATGCTAAGAAACCGAGGATTCATACGTTTATTGCTACAAGTGAGATACATATGAATTATAAGCTGAAAATGAGTAGAGATCAAGTTGTTGAGAAAGCTAGGAGTATGGTGGCTTATGCAAGGAGTATTGGGTGTGAGGATGTTGAATTTAGCCCTGAAGATGCTGGAAGGTTTGGACTTTTACGCCTACACATTAAAAACTTCCAAAATTTCATTTCTATACATTTTTACAACTTTCAAAAATGTAAAGTTATTCAAAATTTGAACTTTGATGTGTTGACTGGACTCTTTACCATCACTTTGCTATTTTTTCATTTTCAGTAGTTTAATATAAAATTGATAATATAATATTTATGTTAATTAGCATCTAAACTTTTCGTTCTCCCATCACATAGCATTATATACTTGCTTTGAGCTATCATCATTGATAGAATTGTTGATTCTGGGACTTTTTCTTCTTGAATGGAGATAATTATTGAGTTTAGGCTAGCTATCCACAAAGTTGCCAATGGGGGACTAAGGAATAGATTGGACTTATTTCCTTGTTTCTTTTTTGGATTAATCATGCTCGTTATGGTCTTATATGTTGAACTGATAGTTGTATGCAGATAGTGTTATATAAATTCAGATGTTTATTTAAAAGTGTCTCGTAATTTAGCTGGCGAATGATCCTGAAAAATCCTGAAAAGTTTCTGGAGAAAATTTCATCAAGAGTCTGTTAACACCAAACTTGTCTTATTAAACAGACATGTTTATGGCATTCTTTTTAACAAGCGCATGGGAGACCTTGAAATTATGACTCTTTTCCCTTTCAACCGAACACTTAAAAGATAATAAGACCTTGTGTACTGTAATTTGCCTTTTCCTATCAAGAAGTTCTTTGGTATGATGCTTTGAGATCTCAAAGAAGAGGGTTAAACTACCATGTTTTATTCTGTTGCCATGTATAAAAGTTTGTAGACTAGCTCAGTGATTAGAATCGACAATGGGAACCACTTTCATGCATTGTGCTAACTGGGATCTGTTCTTTTTGCTGATCTGAGCCTTGTTTTCCTGTTTATTTGCACTACCTCCTTGGTACTAGCTTTAATAATATTAATTTACTTTATGAAAAAAAAAAAACTTATTTCCTGTTTTTTCCTCTCAGATCTGATCCAGAGTTTCTTTATCATATCCTTGGAGAGGTTATCAAAGCTGGGGCAACAACCCTTAACATCCCTGATACTGTTGGATACACTGTACCCGAAGAATTTGGACAATTGATTGCTAAAATAAAAGCGAATACCCCAGGAGTTGAAGATGTGATCATTTCAACACACTGCCAGAACGATCTTGGGCTTTCTACTGCCAACACCTTAGCTGTATGTGGTTCAATGTTGATGAGAACCTAGATGTTTATGCCATCTTAAGTTGTATGCACATTAAAGCGTGTCCAATTTCAGGGAGCATGTGCAGGTGCAAGACAATTGGAAGTGACCATCAATGGAATTGGTGAAAGAGCTGGAAATGCTTCTTTAGAGGAGGTGTGTGAGGGCTTTCCGCTGAGAAATTTCAGTTCTCTTATGTGCATGATTTGGGCTCCAAAATTTGAGGGGTGGAATCACTAATTAAACAACCTTGACTATAAGTTCCCCTCTGTTCTTTCCTTGAAAAAAAGTTAGGTCTTCAAAGAAATTTCCCATAATTGCGTAAGGCATTCTCCACACAAAAGGAACTATTCCACCTCTTCCTAGAGTAAATTAACATCTTTAATTTAGACTGAATGACTGATACTAGAGTAGAAGTTGTGTGGTATGTAATATTATTCTTTTGCAAAACAATAGTTGCAAACATGCAACCGTATTTTGCCATTTTGGTCTTTGGAGCCAATTTCTGCCATTGGTTGTGTTATGTGCTGTTTAAACTGACAAACTACTGACGTTCATGAGACTCCTTTTTCCTCTGTGGTACTTGTTTGTCTTTGGTTTTCATCTTGGGCATGTCGGGCCTTCATTTTCTAACCTTTTACCATGTCCAATGCCGGAATAGGTTGTAATGGCCTTAAAGTGTCGTGGAGAGCAAGTACTAGGTGGCCTATATACAGGGATTAATACACAACATATACTCATGTCAAGCAAGATGGTTTGTACCCCTACTATCTCATAGTATGGTGATCTTTTACTGGTTAATATTCTTCCAATATGCATTCTGACCCTTTATCGTGCAGGTAGAGGAGTA-TTCCGGACTTCATGTGCAGCCACACAAAGCCATTGTTGGAGCTAATGCCTTTGCTCATGAAAGTGGCATCCATCAGGTTTGTGTAATTTGCTCTCGTTTATTGTTGAAAGAAACAATTCCTGAAAGAGGCAAATCTTCTTACCAGTTTATGGACATCTTTTCTTTTCAACGATCAACCAAATTACTGATGGAATGGTGTTCCAAGTTCCCTGATTTACTTCCCCAGACCTCATAGATTTCAGCTTAACAGCAGCTCTTCTGTAGTCCTGAGAAAGAGACTCTAGCTCTATGAGTTGAAGGAGCAATGAAGAAATAAATGGTTGAGTCGTCACTTTGCTTTCAACGAAGGCAAACCAAATACATATATTGAAACCCCTTTTCTGAAGATTTTCATGTTTAGGGCGAGGTTCTTTTGTCATCAACCAAGCAAAACAATCGAACTTTCAGAGGTTCCCTATTTTCCCAAATGCATTTCCAAGGCCAATTTTCAATGACAGCGGGATTTATCCCTGATAACAGGATTTGACCGTGAAAATTCCGTTAAGATCATATTTTCACTTTAGAGAATCAGACCGGAGTTGAAGGGTGGGGGGTGGTTCTATGGCGTCTGAGAAGCAAAAAGCACAGTTATCCAATTCCCAATCATTAATATTGAGCATGAATCTGATGTTCCAGCCTTTTTCACTCCTGTAATCTGACAGAGATGCTTCAGAATTTGGCGCCATAGTGAATAATGTTGGGTACTGGTTTTTGGAGGTTATTGCACAAGTCACATATCTATCCAAGACCTTACTTTCCAGCCATTTTCAATTACAGTTGAGGTCTTGGATAGAAAGAGTCCTACTGTGCACTCATATGCCTCCATACACCACATGAATTAGGAAAATTTGGATGTTTCGTAATCCATGGGTTGGAAAGTCTGTATTTAGCCGTAATAACATCTCTCCATAAAGCTCCCTCCTCCCTATTAAATCTCTAGAGCCGTTTGTGTTGCAAGAAAATACTATGAACCCTCAGATATTTGTTCCCCATGCCCCCAGCCTTCTTGTCAGTAGAAACCGTATCCCTTTTTGAAAGACTTGTTTTGTCTATTCCCTTGTCACAGAAAATCCCTTTACACACTATTGATTAGTACTAGCCTACCTTCCAATGAGTGATGTTATGATAACTTCCTTTTTGCACTTTTCCTCCCATCCCAGATTGTAGTGGCTTGAGACTTTGACCCCAAAGGAAGGCTGAAAGCCTAATTGTTTAATGGGAAAAGAGCCTACTCCACAACTCAAGGTGTCAGCTATTTCCTATAAGTTGATCATTTCGTTCACAGGACAAAAAACACTCTTTGTATAATTAACTTGAAGACCATAATTCGCTTTGAAGAACAAAGTACCATATGAAGTTGTACAATCTGATCATTTCAGTTTTGCAAAAAAAATAAAATAAAAAAATAGAGTGAATCATCTGCATAGAAAAGGCAAGTAAGATGCAGTTTTCCTTGATTTCTCAGACTTGGGTTAAAGCCTTTTATCTTGTCATGTAGTTTTGCTGTTGACAACATTCTTCTTAGACATAACATATCCAAGATAAACAGAAAAGGAGAAAGCGAATCTTCTTGTCTAAAACCTTTTGGTGAAGCAAAAAAGTCTTTAGGTGATCCATTTATGATAATGGATGACATGACAATGGAGATGCAAAATTGGATCCACTTGATTTATTTATTGCCGGAGCTCATGAATTTTAATATGTTGACAAGGATAGGGTGGCAATGGGGCAGGTCATGGGCGGGGCTGGGCAGGGTAAAGAATTAACTTGGCAGGGTGGGGCAATATTTAAATGGGGCAGGGCAGGACAGGTCATAGCTAATATTTTTTTAAAATTTTAATAGTGCAGGGCAGGTGTGAGTTCATGAGAGGTTCCTTAGTGTTTTGAACACTGTAGCTTGCTAGCAATGCTTAGGTTGAATCCCGAAGGAAGTTTTCCGATGTTTCTGAGCATATAATTATCCTTTATTCGGGTTATTTGATTAACAAAAAATTTAAGAATTCATTTGCGTTTTGAACACTGTAGCTTTTTACTTATATTTAACCAGTTTATCACTTTGTGTTATTTAAAAGTTAAACAGAACATTAAAAAGTGGGAAAAATAAATTAACACTTAAATGGGGCAGGGCGGGCAAAATGTTGGAAAATTCTAGGCAGAGCAGGGTAGGGCGGGTTAAATTCTTAACGGGTCAAGGCTTGCTCAGCGCTAGCCATCCCTATCGCCATCCCTGGATAAGGGATTCCAATGAACGTTGTCAAAGACTTTCTCGCTCACAGCTTAACGTGAGACGTTTAAGATAAACTGAGAAGCCTCAAAGACCCAACAAACAATTAGAAGTTGCTCCAAGTTTTCCTTCTTGGGGCATTAGATTATAATAAACATTTGGTACCAATATTCCAGGAGGTGCAGAGATATTATACCTACTGACGTAAAAGAACTTCCATCAGGAGTTTGAATCTGCTTACTCTTTTATATTTCTGATTATTCATTTGTTTATGGCCCTTCTCATTTTAGATGTGTAGTTACTGATCTTATATTTGAATATCTATGGATAAATCTTCCACATATTTAGTTAGAGCTCGATTAATTGTCCTGTTAGCATTTGTTTTTGATTCATCTTCAAATGCATAAAGTTTTTCAGTTAAACTTCTTTGAATATATGTAGTATATTATGTCTCTCCTCCCGTTTCTTCCTTACCTCAAAGCTGGATTCGCACCTTTTTGTAACCGTTCAGTTGTGAATCAAAAAAAAAAGGAAAAAATATTTCAGTTTTTCCTTTTCAATCTCTTCTCCTTCTTAAACTACTTTTATGCTCTTTAGGATGGAATGTTAAAACACAAAGATACATATGAGATTATATCTCCTGAAGATATTGGGCTTAATCGTGCTAATGAATCTGGTATTGTCCTTGGGAAACTCAGGTATGTGATTTACCAATCAATGCTTATTGCTGTGATAGCTTAAGTGTTAGATTTCTGCGCTGTTTGAGTTTTTAGTTTTTATCCCTTGATTATTGAACTTGCTTAGCAAAGTACATTCTTTTAGTTGCTATGAGGTTAGTATTTCTTTAGTACTTGAGTAAGGCTTCCCTGATCCATAGACACTCACACAGTTGCTGTTTCAAATAGTGAATCATACCTTTGTTGTTTTAAAACAGTGTGGAGGTATATAGGAACTTCCTCTCTTCTATGGAGAGGTAAAGTAGAAGCTTATTGAGTTTGCCTCACTTTAATATGGTCAGAGCCACAATTGCATGAAATAATTATCATCACAGTCTGTAACTTAATCCCTCTCGTGCCCTCCTTCCTAACCTGCTCTATTCATTATTTACATTGAATTACATCATGTCTTCAAGGAAATTGATACGTTGAACATTTTTTTTGTAGTGGGCGTCATGCTTTGCAAGCC-AAAATGCTTGAGGTAAATTGCATGCTCTGAGAATTTTGTTTATTTCTTAAATTTAAGAGCACGAGACAAATCGTTTTAGTCCTATGCAGCTTGGATACGAGATTGAGGGCAAAGAACTTGATGACCTGTTCTGGCGATTCAAATCTGTGGCTGAGAAGAAAAAGGTGAATTAAGATTTTGAAATTTCCACTGTTGTTTGGTATATTTACGTCATCATTCAAATGCATTTGGAGTGGTGGAGTTTAGTAAATTTGCTACATTGAAAATTCATGGAAGGGGATTGATGGCTGGAACATTTTCTCCTTTCTAGGTAACCTAGTGACTAGAACATGAGCTAAAAATATAGTTACGATCTCTCTCTCTCTCTCTCCCTTTTCACATTCAGTAAATCTTAAGTACGTCACATCTTCAAATTTTGTGAATTTTAGTGTCTTTATTCATCTATGTATCTGGGTTGTACATTAATTTTTGTGGAGTAGGAAACAACTGGTGTGTAAGAACTTCTAAGATATTGTGAAGTGAGATGAACTAAAGTATCAGAAAAGGTGGAAGTGAGAGTAGAAACAGATAAAGAAAATTGAGCATGAATGCGAATGGAAAGATTGGGCAGAGTTCAGGATACCTTCTGAACCAAGATAATCTGTCCTATTATTACTGGTATATTATAAAGTATAAACTACAGCTTTTCTCAAGGTGGGGAAACTGTCAAATTTGTGCTAAGACCCTTTAAACCTTCTTTTGGTTGTCAAAGTTTCCTCTGCTCATTTGAAAGGGTTATTTGGCTAATTATACTTTTATCAGTTAAATTATAATTAAAATTAAGGTTAAGAACTGTGTGGATCTCATATGATATTGGTATCGTGGACATATTTTTTGGCCATCTATTTATCTCCACGCTGCTATTTCAGAAAATTACAGATGATGACCTGGTAGCACTGATGTCAGATGAGGTTTTCCAGCCTCAATTTGTGTGGCAACTTCAAAATGTACAGGTAGATATTAATGTTGACTATATCTGCACTGTTTTAACTTTGATCTGGATTAAAAAGGATGGTTCAGCTGATTGAAAGACTTCCTGCTCTATGGACAGGTTACTTCTGGAAGTCTTGGCCTTTCTACAGCAACTGTTAAGCTCATTGATGCTGATGGTCGAGAGCATATTTCTTGTTCTGTTGGAACGGGGCCAGTTGACGCGGCTTATAAGGCAGTTGATCTCATTGTTAAGGTATGAAATAGAAATGAAACTCCTAATAATAAATAATCTTGTCACAGTGCTAGGACCCATGTTGATTGCAAGCCGATCAGTATGTTATATTCAACTATAAATGGTTAATTACAAACTCATTTGGTGAATCTCTTTTATGCAAATCGTATTCATAATTATACATATACTAATATTATTTTTCCCCAGGCTATAGATGCATCAAGTTTGAGTTCTGTTGAGCAAAATATTTGGAAGCTCGTGATTTTTGATATATTGTCTTGTTGTGTCCTCTTACCTGTACTTTTTCCTCCGTCATATGTACTACATATAAAGTTGTCTTAGGGTGCACCAAGGTATGGACTAATGGTAAAAGAAGTGGGTTTAGAACTATGAGGTCTCGGGTTCAAATTCCTCAGAGACAAAACAAATAGGTGATTTCTTCTCATCTGTCCTAGCCTTAGTGGACAGATTACCTCATACCTATCCCGTGGAATTAGTCGAGTTGTCTGAAAGCTGGTCCAGACACCACGGTTATCCAAAAATAAAAGTTACCTTAGGGTCAATTGTTCTTTTGTACAACAGTATTCTTGCTGTTGAAGAAGTCGGGTCAACCCAAGTATATGTTGTACTTAAAAACTAAGAGCCTGTTTGGATTCACTTGAAAGTTGGTCAAACCTACTTTTAAGTCATTTTTAGTTTTGGGGATTGTTTGACATGGTTAAAAATAAGTTTAAAATGACCCAATCCAAACGGGCTCTAAGACTACATAATAAACCTCATGTGGAGTCCTATTCTAAAGCTAGTCCAAACCTAACCCAGCATCTAGTGCTGTATTCAATGATGACATCAGCAGACAACCCAAATCCTACATAACAAATGCAATTTTGCTATAATGTGCTGGGAAGATATTGCCGAGAATCTATTGGAAATAACCTCTCAACCTTTACAAGGCAGGGGCAAGGCTACGTACACACCACCCTCCCCAGACCCCACTTGTTTACACTGGGTGTGTTGTTGTACTGCGAAGATATCTTTTAAGAGCAGTTTTATCATTTTCCATATAATTGATGGACCTACTAGCTTTATAATAACTTCCCAAAAATAATTAAAACTATATTTGATATGCATTTTGAGTAGGAATTTTTACATTTTGAATTTGACTTACAAGCAGTTTTCTATATATCTTGAGAGAACCCAACTTTTTTGTTCGAGAAGATGGTGTTTGCCTCTAAATCAGCAGTCAAACTTGTCTCTATTTAATAATCTCTTTGGTTTAATGTGTATTATGGTCTGGTAATTCTAGTGTTCATGCATTTTGTGCAGGTACCTGTAACACTCCTTGAGTATTCCATGAATGCAGTCACACAAGGTATAGATGCTATAGCTTCAACCAGAGTCTTAATTCGTGGAGAAAATGGCCATACATCAACCCATGCCGTAACTGGAGAGACTATTCACCGTACATTTAGGTATGAAATGTACCAGCCATGTTGTTTGCATTTATTCTTCTTTCGCTGATAGAACCTAGGGAACATGGAGAGAGAGGGAGGGGGGCATGTAGGTGTTGACACAGTAAATTTTAGAATTGGCGACATGACATCAATGAGCCAAATTTATATGTTTTCAATAAAGCATAACCACAGTAGTCACAAGATTCATGTTTACTCTCCCCTTCTCTTCACCATTCTTCTATAATGCAGCCTTCACCCAACAAAAGATCAACTTCCAGGCCTCTTGCTTATTTTCTCCATTGACTGCCCTCACCCTTTGTGTTTCCTCATCACTGCAACCCCTCACATGACTGCTCCCAACTGTTACTCTCGTGCCTCCAAGTTCTTTCTTCAATCTCCCATTTTTCCATTAGACTTGTCCAAAAGAAACACCAGTGTTAGTGTGTGTATCAAGTAGAAGAGTCAAAATCCGTAGTAGATATGCTTGGCTGGATGTCAATCATGTGTTCAACGTCACTTTTTTCTGGGGCAAGTCTGTGAAATATCACCTTTCATTTCTCTCATTAGAAAAGGCTTTTTATATCTTCTATCTTCTTCCAGTGGAACCGGAGCAGATATGGATATTGTCATCTCCAGTGTCCGAGCCTATGTTGGTGCATTGAATAAGATGATGAGTTTCAGAAAACTAATGGCGAAAAATAACAAACCCGAAAGCAGTGCAGTCGTATAGGTACTTCTGTGCAAATCAAGGTTATGGAACTTTTGCAACTGCACTGGAGCTTTATCATTTGTACAAAATGTAGGAGTCTGTTCAAAGAATTTGAGCCTGTAGTTTTCAAGAAAACAAAGCTTAATATGTCTGGTAGTGCTTGAAAATCATCTAAGTTTATGGTGTATCAGTTGGAACATTAGACACATTGTCCATATAACTTTGTTCATGCTCCCGTTTAACTAATTTATGAATCTACATACCAC</genome_strand>
        <mrna_strand>TCTCTTACTTGAATTTTCAGTCTCTTCTCCCAGCCGCCATTAAAACCAGCACTCGCAAACTCCAATTTCTCTTCTCCGGCAATGGCGTCTATCACCGCAAATCATCCAATCTCCGGTAAACCATTAATCTCATTCCGTCCCAAAAACCCTTTACTTCAAACCCAAACTCTCTTCAATTTCAAACCATCAATCTCCAAGCACTCCAATTCTTCATTTTCCATTCCCGTTGTCCGCTGCTCAATCCGCCGTATACCGGAATATACTCCGAGTCACATTCCCGATCCAAACTACGTCCGGATATTCGACACCACTCTCCGTGATGGCGAACAATCACCAGGGGCTACAATGACTACAAAGGAGAAACTGGATGTTGCGCGTCAGTCAGCTAAGCTTGGTGTTGATATAATTGAGGCTGGTTTTCCTGCTTCTTCTGAAGCTGATCTTGAAGCTGTGAAATTGATAGCTAAGGAAGTTGGGAATGGTGTTTATGAAGAGGAATACGTTCCGGTTATTTGTGGATTGGCGAGGTGTAATAAGAAGGATATTGATAAGGCGTGGGAGGCTGTGAAGTATGCTAAGAAACCGAGGATTCATACGTTTATTGCTACAAGTGAGGTACATATGAATTATAAGCTGAAAATGAGTAGAGATCAAGTTGTTGAGAAAGCTAGGAGTATGGTGGCTTATGCAAGGAGTATTGGGTGTGAGGATGTTGAATTTAGCCCTGAAGATGCTGGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGATCCGGAGTTTCTTTATCATATCTTGGGAGAGGTTATCAAAGCTGGGGCAACAACCCTTAACATCCCTGATACTGTTGGATACACTGTACCCGAAGAATTTGGACAATTGATTGCTAAAATAAAAGCGAATACCCCAGGAGTTGAAGATGTGATCATTTCAACACACTGCCAGAACGATCTTGGGCTTTCTACTGCCAACACCTTAGCT.................................................................................GGAGCATGTGCAGGTGCAAGACAATTGGAAGTGACCATCAATGGAATTGGTGAAAGAGCTGGAAATGCTTCTTTAGAGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAATGGCCTTAAAGTGTCGTGGAGAGCAAGTACTAGGTGGCCTATATACAGGGATTAATACACAACATATACTCATGTCAAGCAAGATG.....................................................................................GTAGAGG-GTATTTCGGGACTTCATGTGCAACCACACAAGGCCATTGTTGGAGCTAATGCTTTTGTTCATGAAAGTGGCATCCATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAATGTTAAAACACAAAGATACATATGAGATTATATCTCCTGAAGATATTGGGCTTAATCGTGCTAATGAATCTGGTATTGTCTTCGGGAAACTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGG-GTCATGCTTTGCAAGCCAAAAATGCTTGAG.............................................................................CTTGGATACGAGATTGAGGGAAAAGAACTTGATGACCTGTTCTGGCGATTCAAATCTGTGGCTGAGAAGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTACAGATGATGACCTGGTAGCACTGATGTCAGATGAAGTTTTCCAGCCTCAATTTGTGTGGCAACTTCAAAATGTACAG..................................................................................................GTTACTTGTGGAAGTCTTGGCCTTTCTACAGCAACCGTTAAGCTTATTGATGCTGATGGTCGAGAGCATATTTCTTGTTCTGTTGGAACGGGGCCAGTTGACGCGGCTTATAAGGCAGTTGATCTCATTGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGTAACACTCCTTGAGTATTCCATGAATGCAGTCACACAAGGTATAGATGCTATAGCTTCAACCAGAGTCTTGATTCGTGGAGAAAATGGCCATACATCAACCCATGCCTTAACTGGAGAGACTGTTCACCGTACATTTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCGGAGCAGATATGGATATTGTCATCTCCAGTGTCCGAGCCTATGTTGGTGCATTGAATAAGATGATGAGTTTCAGAAAATTAATGGCGAAAAATAACAAACCCGAAAGCAGTGCAGTCATATAGGAACTTCTGTGCAAATCAAGGTTATGGAACTTTTGCAACTGCACTGGAGCTTTGTCATTTGTACAAAATGTAGGAGGCTGTTCAAAGAATTTGAGCCTGTAGTTTTCAAGAAAACAAAGCTT-ATATGTTTGGTAGTGCTTGAAAATCATTTAAGTTTATGGTGTATCAGTTGGAACATTAGACACATTGTCCATATAACTTTGTTCATGCTCCCGTTTGACTAATTTATGAATTTACATACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314837" ref_strand="+" ref_description="SGN-E314837 [cTOA-20-H12]">
      <seq>ccattaaaaccagcactcgcaaactccaatttctcttctccggcaatggcgtctatcaccgcaaatcatccaatctccggtaaaccattaatctcattccgtcccaaaaaccctttacttcaaacccaaactctcttcaatttcaaaccatcaatctccaagcactccaattcttcattttccattcccgttgtccgctgctcaatccgccgtagaccggaatatactccgagtcacattcccgatccaaactatgtccggatattcgacaccactctccgtgatggcgaacaatcaccaggggctacaatgactacaaaggagaaactggatgttgcacgtcagttagctaagcttggtgttgatataattgaggctggttttcctgcttcttctgaagctgatcttgaagctgtgaaattgatagctaaggaagttgggaatggtgtttatgaagagggatatgttccggttatttgtggattggcgaggtgtaataagaaggatattgataaggcgtgggaggctgtgaagtatgctaagaaaccgaggattcatacgtttattgctacaagtgagatacatatgaattataagctgaaaatgagtagagatcaagttgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41334" stop="42558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41634" g_stop="42258" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E314837" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41634" e_stop="42258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTAAAACCAGCACTCGCAAACTCCAATTTCTCTTCTCCGGCAATGGCGTCTATCACCGCAAATCATCCAATCTCCGGTAAACCATTAATCTCATTCCGTCCCAAAAACCCTTTACTTCAAACCCAAACTCTCTTCAATTTCAAACCATCAATCTCCAAGCACTCCAATTCTTCATTTTCCATTCCCGTTGTCCGCTGCTCAATCCGCCGTAGACCGGAATATACTCCGAGTCACATTCCCGATCCAAACTATGTCCGGATATTCGACACCACTCTCCGTGATGGCGAACAATCACCAGGGGCTACAATGACTACAAAGGAGAAACTGGATGTTGCACGTCAGTTAGCTAAGCTTGGTGTTGATATAATTGAGGCTGGTTTTCCTGCTTCTTCTGAAGCTGATCTTGAAGCTGTGAAATTGATAGCTAAGGAAGTTGGGAATGGTGTTTATGAAGAGGGATATGTTCCGGTTATTTGTGGATTGGCGAGGTGTAATAAGAAGGATATTGATAAGGCGTGGGAGGCTGTGAAGTATGCTAAGAAACCGAGGATTCATACGTTTATTGCTACAAGTGAGATACATATGAATTATAAGCTGAAAATGAGTAGAGATCAAGTTGTTG</genome_strand>
        <mrna_strand>CCATTAAAACCAGCACTCGCAAACTCCAATTTCTCTTCTCCGGCAATGGCGTCTATCACCGCAAATCATCCAATCTCCGGTAAACCATTAATCTCATTCCGTCCCAAAAACCCTTTACTTCAAACCCAAACTCTCTTCAATTTCAAACCATCAATCTCCAAGCACTCCAATTCTTCATTTTCCATTCCCGTTGTCCGCTGCTCAATCCGCCGTAGACCGGAATATACTCCGAGTCACATTCCCGATCCAAACTATGTCCGGATATTCGACACCACTCTCCGTGATGGCGAACAATCACCAGGGGCTACAATGACTACAAAGGAGAAACTGGATGTTGCACGTCAGTTAGCTAAGCTTGGTGTTGATATAATTGAGGCTGGTTTTCCTGCTTCTTCTGAAGCTGATCTTGAAGCTGTGAAATTGATAGCTAAGGAAGTTGGGAATGGTGTTTATGAAGAGGGATATGTTCCGGTTATTTGTGGATTGGCGAGGTGTAATAAGAAGGATATTGATAAGGCGTGGGAGGCTGTGAAGTATGCTAAGAAACCGAGGATTCATACGTTTATTGCTACAAGTGAGATACATATGAATTATAAGCTGAAAATGAGTAGAGATCAAGTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317994" ref_strand="+" ref_description="SGN-E317994 [cTOA-30-L17]">
      <seq>ttaaaaccagcactcgcaaactccaatttctcttctccggcaatggcgtctatcaccgcaaatcatccaatctccggtaaaccattaatctcattccgtcccaaaaaccctttacttcaaacccaaactctcttcaatttcaaaccatcaatctccaagcactccaattcttcattttccattcccgttgtccgctgctcaatccgccgtagaccggaatatactccgagtcacattcccgatccaaactatgtccggatattcgacaccactctccgtgatggcgaacaatcaccaggggctacaatgactacaaaggagaaactggatgttgcacgtcagttagctaagcttggtgttgatataattgaggctggttttcctgcttcttctgaagctgatcttgaagctgtgaaattgatagctaaggaagttgggaatggtgtttatgaagagggatatgttccggttatttgtggattggcgaggtgtaataagaaggatattgataaggcgtgggaggctgtgaagtatgctaagaaaccgaggattcatacgtttattgctacaagtgagatacatatgaattataagctgaaaatgagtagagatcaagttgttgagaaagctangagtatggtggcttatgcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41337" stop="42590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41637" g_stop="42290" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E317994" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41637" e_stop="42290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAACCAGCACTCGCAAACTCCAATTTCTCTTCTCCGGCAATGGCGTCTATCACCGCAAATCATCCAATCTCCGGTAAACCATTAATCTCATTCCGTCCCAAAAACCCTTTACTTCAAACCCAAACTCTCTTCAATTTCAAACCATCAATCTCCAAGCACTCCAATTCTTCATTTTCCATTCCCGTTGTCCGCTGCTCAATCCGCCGTAGACCGGAATATACTCCGAGTCACATTCCCGATCCAAACTATGTCCGGATATTCGACACCACTCTCCGTGATGGCGAACAATCACCAGGGGCTACAATGACTACAAAGGAGAAACTGGATGTTGCACGTCAGTTAGCTAAGCTTGGTGTTGATATAATTGAGGCTGGTTTTCCTGCTTCTTCTGAAGCTGATCTTGAAGCTGTGAAATTGATAGCTAAGGAAGTTGGGAATGGTGTTTATGAAGAGGGATATGTTCCGGTTATTTGTGGATTGGCGAGGTGTAATAAGAAGGATATTGATAAGGCGTGGGAGGCTGTGAAGTATGCTAAGAAACCGAGGATTCATACGTTTATTGCTACAAGTGAGATACATATGAATTATAAGCTGAAAATGAGTAGAGATCAAGTTGTTGAGAAAGCTAGGAGTATGGTGGCTTATGCAAGG</genome_strand>
        <mrna_strand>TTAAAACCAGCACTCGCAAACTCCAATTTCTCTTCTCCGGCAATGGCGTCTATCACCGCAAATCATCCAATCTCCGGTAAACCATTAATCTCATTCCGTCCCAAAAACCCTTTACTTCAAACCCAAACTCTCTTCAATTTCAAACCATCAATCTCCAAGCACTCCAATTCTTCATTTTCCATTCCCGTTGTCCGCTGCTCAATCCGCCGTAGACCGGAATATACTCCGAGTCACATTCCCGATCCAAACTATGTCCGGATATTCGACACCACTCTCCGTGATGGCGAACAATCACCAGGGGCTACAATGACTACAAAGGAGAAACTGGATGTTGCACGTCAGTTAGCTAAGCTTGGTGTTGATATAATTGAGGCTGGTTTTCCTGCTTCTTCTGAAGCTGATCTTGAAGCTGTGAAATTGATAGCTAAGGAAGTTGGGAATGGTGTTTATGAAGAGGGATATGTTCCGGTTATTTGTGGATTGGCGAGGTGTAATAAGAAGGATATTGATAAGGCGTGGGAGGCTGTGAAGTATGCTAAGAAACCGAGGATTCATACGTTTATTGCTACAAGTGAGATACATATGAATTATAAGCTGAAAATGAGTAGAGATCAAGTTGTTGAGAAAGCTANGAGTATGGTGGCTTATGCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210230" ref_strand="+" ref_description="SGN-E210230 [cLEC-40-F8]">
      <seq>actcgcaaactccaatttctcttctccggcaatggcgtctatcaccgcaaatcatccaatctccggtaaaccattaatctcattccgtcccaaaaaccctttacttcaaacccaaactctcttcaatttcaaaccatcaatctccaagcactccaattcttcattttccattcccgttgtccgctgctcaatccgccgtagaccggaatatactccgagtcacattcccgatccaaactatgtccggatattcgacaccactctccgtgatggcgaacaatcaccaggggctacaatgactacaaaggagaaactggatgttgcacgtcagttagctaagcttggtgttgatataattgaggctggttttcctgcttcttctgaagctgatcttgaagctgtgaaattgatagctaaggaagttgggaatggtgtttatgaagagggatatgttccggttatttgtggattggcgaggtgtaataagaaggatattgataaggcgtgggaggctgtgaagtatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41348" stop="42472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41648" g_stop="42172" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E210230" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41648" e_stop="42172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCGCAAACTCCAATTTCTCTTCTCCGGCAATGGCGTCTATCACCGCAAATCATCCAATCTCCGGTAAACCATTAATCTCATTCCGTCCCAAAAACCCTTTACTTCAAACCCAAACTCTCTTCAATTTCAAACCATCAATCTCCAAGCACTCCAATTCTTCATTTTCCATTCCCGTTGTCCGCTGCTCAATCCGCCGTAGACCGGAATATACTCCGAGTCACATTCCCGATCCAAACTATGTCCGGATATTCGACACCACTCTCCGTGATGGCGAACAATCACCAGGGGCTACAATGACTACAAAGGAGAAACTGGATGTTGCACGTCAGTTAGCTAAGCTTGGTGTTGATATAATTGAGGCTGGTTTTCCTGCTTCTTCTGAAGCTGATCTTGAAGCTGTGAAATTGATAGCTAAGGAAGTTGGGAATGGTGTTTATGAAGAGGGATATGTTCCGGTTATTTGTGGATTGGCGAGGTGTAATAAGAAGGATATTGATAAGGCGTGGGAGGCTGTGAAGTATGC</genome_strand>
        <mrna_strand>ACTCGCAAACTCCAATTTCTCTTCTCCGGCAATGGCGTCTATCACCGCAAATCATCCAATCTCCGGTAAACCATTAATCTCATTCCGTCCCAAAAACCCTTTACTTCAAACCCAAACTCTCTTCAATTTCAAACCATCAATCTCCAAGCACTCCAATTCTTCATTTTCCATTCCCGTTGTCCGCTGCTCAATCCGCCGTAGACCGGAATATACTCCGAGTCACATTCCCGATCCAAACTATGTCCGGATATTCGACACCACTCTCCGTGATGGCGAACAATCACCAGGGGCTACAATGACTACAAAGGAGAAACTGGATGTTGCACGTCAGTTAGCTAAGCTTGGTGTTGATATAATTGAGGCTGGTTTTCCTGCTTCTTCTGAAGCTGATCTTGAAGCTGTGAAATTGATAGCTAAGGAAGTTGGGAATGGTGTTTATGAAGAGGGATATGTTCCGGTTATTTGTGGATTGGCGAGGTGTAATAAGAAGGATATTGATAAGGCGTGGGAGGCTGTGAAGTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689371" ref_strand="+" ref_description="SGN-E689371 [t3_tus_84_G09]">
      <seq>atggaattggtgaaagagctggaaatgcttctttagaggaggttgtaatggccttaaagtgtcgtggagagcaagtactaggtggcctatatacagggattaatacacaacatatactcatgtcaagcaagatggtagaggagtattccggacttcatgtgcagccacacaaagccattgttggagctaatgcctttgctcatgaaagtggcatccatcaggatggaatgttaaaacacaaagatacatatgagattatatctcctgaagatattgggcttaatcgtgctaatgaatctggtattgtccttgggaaactcagtgggcgtcatgctttgcaagccaaaatgcttgagcttggatacgagattgagggcaaagaacttgatgacctgttctggcgattcaaatctgtggctgagaagaaaaagaaaattacagatgatgacctggtagcactgatgtcagatgaggttttccagcctcaatttgtgtggcaacttcaaaatgtacaggttacttctggaagtcttggcctttctacagcaactgttaagctcattgatgctgatggtcgagagcatatttcttgttctgttggaacggggccagttgacgcggcttataaggcagttgatctcattgttaaggtacctgtaacactccttgagtattccatgaatgcagtcacacaaggtatagatgctatagcttcaaccagagtcttaattcgtggagaaaatggccatacatcaacccatgccgtaactggagagactattcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43350" stop="50795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43650" g_stop="43690" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43691" i_stop="44195" i_length="505">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44196" g_stop="44288" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="134" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44289" i_stop="44373" i_length="85">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44374" g_stop="44460" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="221" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44461" i_stop="47244" i_length="2784">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47245" g_stop="47345" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="322" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47346" i_stop="47810" i_length="465">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47811" g_stop="47844" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="356" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47845" i_stop="47921" i_length="77">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47922" g_stop="47996" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="431" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47997" i_stop="48740" i_length="744">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48741" g_stop="48824" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="515" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="48825" i_stop="48922" i_length="98">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.667" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="48923" g_stop="49057" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="650" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="49058" i_stop="50359" i_length="1302">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="50360" g_stop="50495" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="786" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E689371" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43650" e_stop="43690"/>
          <exon e_start="44196" e_stop="44288"/>
          <exon e_start="44374" e_stop="44460"/>
          <exon e_start="47245" e_stop="47345"/>
          <exon e_start="47811" e_stop="47844"/>
          <exon e_start="47922" e_stop="47996"/>
          <exon e_start="48741" e_stop="48824"/>
          <exon e_start="48923" e_stop="49057"/>
          <exon e_start="50360" e_stop="50495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAATTGGTGAAAGAGCTGGAAATGCTTCTTTAGAGGAGGTGTGTGAGGGCTTTCCGCTGAGAAATTTCAGTTCTCTTATGTGCATGATTTGGGCTCCAAAATTTGAGGGGTGGAATCACTAATTAAACAACCTTGACTATAAGTTCCCCTCTGTTCTTTCCTTGAAAAAAAGTTAGGTCTTCAAAGAAATTTCCCATAATTGCGTAAGGCATTCTCCACACAAAAGGAACTATTCCACCTCTTCCTAGAGTAAATTAACATCTTTAATTTAGACTGAATGACTGATACTAGAGTAGAAGTTGTGTGGTATGTAATATTATTCTTTTGCAAAACAATAGTTGCAAACATGCAACCGTATTTTGCCATTTTGGTCTTTGGAGCCAATTTCTGCCATTGGTTGTGTTATGTGCTGTTTAAACTGACAAACTACTGACGTTCATGAGACTCCTTTTTCCTCTGTGGTACTTGTTTGTCTTTGGTTTTCATCTTGGGCATGTCGGGCCTTCATTTTCTAACCTTTTACCATGTCCAATGCCGGAATAGGTTGTAATGGCCTTAAAGTGTCGTGGAGAGCAAGTACTAGGTGGCCTATATACAGGGATTAATACACAACATATACTCATGTCAAGCAAGATGGTTTGTACCCCTACTATCTCATAGTATGGTGATCTTTTACTGGTTAATATTCTTCCAATATGCATTCTGACCCTTTATCGTGCAGGTAGAGGAGTATTCCGGACTTCATGTGCAGCCACACAAAGCCATTGTTGGAGCTAATGCCTTTGCTCATGAAAGTGGCATCCATCAGGTTTGTGTAATTTGCTCTCGTTTATTGTTGAAAGAAACAATTCCTGAAAGAGGCAAATCTTCTTACCAGTTTATGGACATCTTTTCTTTTCAACGATCAACCAAATTACTGATGGAATGGTGTTCCAAGTTCCCTGATTTACTTCCCCAGACCTCATAGATTTCAGCTTAACAGCAGCTCTTCTGTAGTCCTGAGAAAGAGACTCTAGCTCTATGAGTTGAAGGAGCAATGAAGAAATAAATGGTTGAGTCGTCACTTTGCTTTCAACGAAGGCAAACCAAATACATATATTGAAACCCCTTTTCTGAAGATTTTCATGTTTAGGGCGAGGTTCTTTTGTCATCAACCAAGCAAAACAATCGAACTTTCAGAGGTTCCCTATTTTCCCAAATGCATTTCCAAGGCCAATTTTCAATGACAGCGGGATTTATCCCTGATAACAGGATTTGACCGTGAAAATTCCGTTAAGATCATATTTTCACTTTAGAGAATCAGACCGGAGTTGAAGGGTGGGGGGTGGTTCTATGGCGTCTGAGAAGCAAAAAGCACAGTTATCCAATTCCCAATCATTAATATTGAGCATGAATCTGATGTTCCAGCCTTTTTCACTCCTGTAATCTGACAGAGATGCTTCAGAATTTGGCGCCATAGTGAATAATGTTGGGTACTGGTTTTTGGAGGTTATTGCACAAGTCACATATCTATCCAAGACCTTACTTTCCAGCCATTTTCAATTACAGTTGAGGTCTTGGATAGAAAGAGTCCTACTGTGCACTCATATGCCTCCATACACCACATGAATTAGGAAAATTTGGATGTTTCGTAATCCATGGGTTGGAAAGTCTGTATTTAGCCGTAATAACATCTCTCCATAAAGCTCCCTCCTCCCTATTAAATCTCTAGAGCCGTTTGTGTTGCAAGAAAATACTATGAACCCTCAGATATTTGTTCCCCATGCCCCCAGCCTTCTTGTCAGTAGAAACCGTATCCCTTTTTGAAAGACTTGTTTTGTCTATTCCCTTGTCACAGAAAATCCCTTTACACACTATTGATTAGTACTAGCCTACCTTCCAATGAGTGATGTTATGATAACTTCCTTTTTGCACTTTTCCTCCCATCCCAGATTGTAGTGGCTTGAGACTTTGACCCCAAAGGAAGGCTGAAAGCCTAATTGTTTAATGGGAAAAGAGCCTACTCCACAACTCAAGGTGTCAGCTATTTCCTATAAGTTGATCATTTCGTTCACAGGACAAAAAACACTCTTTGTATAATTAACTTGAAGACCATAATTCGCTTTGAAGAACAAAGTACCATATGAAGTTGTACAATCTGATCATTTCAGTTTTGCAAAAAAAATAAAATAAAAAAATAGAGTGAATCATCTGCATAGAAAAGGCAAGTAAGATGCAGTTTTCCTTGATTTCTCAGACTTGGGTTAAAGCCTTTTATCTTGTCATGTAGTTTTGCTGTTGACAACATTCTTCTTAGACATAACATATCCAAGATAAACAGAAAAGGAGAAAGCGAATCTTCTTGTCTAAAACCTTTTGGTGAAGCAAAAAAGTCTTTAGGTGATCCATTTATGATAATGGATGACATGACAATGGAGATGCAAAATTGGATCCACTTGATTTATTTATTGCCGGAGCTCATGAATTTTAATATGTTGACAAGGATAGGGTGGCAATGGGGCAGGTCATGGGCGGGGCTGGGCAGGGTAAAGAATTAACTTGGCAGGGTGGGGCAATATTTAAATGGGGCAGGGCAGGACAGGTCATAGCTAATATTTTTTTAAAATTTTAATAGTGCAGGGCAGGTGTGAGTTCATGAGAGGTTCCTTAGTGTTTTGAACACTGTAGCTTGCTAGCAATGCTTAGGTTGAATCCCGAAGGAAGTTTTCCGATGTTTCTGAGCATATAATTATCCTTTATTCGGGTTATTTGATTAACAAAAAATTTAAGAATTCATTTGCGTTTTGAACACTGTAGCTTTTTACTTATATTTAACCAGTTTATCACTTTGTGTTATTTAAAAGTTAAACAGAACATTAAAAAGTGGGAAAAATAAATTAACACTTAAATGGGGCAGGGCGGGCAAAATGTTGGAAAATTCTAGGCAGAGCAGGGTAGGGCGGGTTAAATTCTTAACGGGTCAAGGCTTGCTCAGCGCTAGCCATCCCTATCGCCATCCCTGGATAAGGGATTCCAATGAACGTTGTCAAAGACTTTCTCGCTCACAGCTTAACGTGAGACGTTTAAGATAAACTGAGAAGCCTCAAAGACCCAACAAACAATTAGAAGTTGCTCCAAGTTTTCCTTCTTGGGGCATTAGATTATAATAAACATTTGGTACCAATATTCCAGGAGGTGCAGAGATATTATACCTACTGACGTAAAAGAACTTCCATCAGGAGTTTGAATCTGCTTACTCTTTTATATTTCTGATTATTCATTTGTTTATGGCCCTTCTCATTTTAGATGTGTAGTTACTGATCTTATATTTGAATATCTATGGATAAATCTTCCACATATTTAGTTAGAGCTCGATTAATTGTCCTGTTAGCATTTGTTTTTGATTCATCTTCAAATGCATAAAGTTTTTCAGTTAAACTTCTTTGAATATATGTAGTATATTATGTCTCTCCTCCCGTTTCTTCCTTACCTCAAAGCTGGATTCGCACCTTTTTGTAACCGTTCAGTTGTGAATCAAAAAAAAAAGGAAAAAATATTTCAGTTTTTCCTTTTCAATCTCTTCTCCTTCTTAAACTACTTTTATGCTCTTTAGGATGGAATGTTAAAACACAAAGATACATATGAGATTATATCTCCTGAAGATATTGGGCTTAATCGTGCTAATGAATCTGGTATTGTCCTTGGGAAACTCAGGTATGTGATTTACCAATCAATGCTTATTGCTGTGATAGCTTAAGTGTTAGATTTCTGCGCTGTTTGAGTTTTTAGTTTTTATCCCTTGATTATTGAACTTGCTTAGCAAAGTACATTCTTTTAGTTGCTATGAGGTTAGTATTTCTTTAGTACTTGAGTAAGGCTTCCCTGATCCATAGACACTCACACAGTTGCTGTTTCAAATAGTGAATCATACCTTTGTTGTTTTAAAACAGTGTGGAGGTATATAGGAACTTCCTCTCTTCTATGGAGAGGTAAAGTAGAAGCTTATTGAGTTTGCCTCACTTTAATATGGTCAGAGCCACAATTGCATGAAATAATTATCATCACAGTCTGTAACTTAATCCCTCTCGTGCCCTCCTTCCTAACCTGCTCTATTCATTATTTACATTGAATTACATCATGTCTTCAAGGAAATTGATACGTTGAACATTTTTTTTGTAGTGGGCGTCATGCTTTGCAAGCCAAAATGCTTGAGGTAAATTGCATGCTCTGAGAATTTTGTTTATTTCTTAAATTTAAGAGCACGAGACAAATCGTTTTAGTCCTATGCAGCTTGGATACGAGATTGAGGGCAAAGAACTTGATGACCTGTTCTGGCGATTCAAATCTGTGGCTGAGAAGAAAAAGGTGAATTAAGATTTTGAAATTTCCACTGTTGTTTGGTATATTTACGTCATCATTCAAATGCATTTGGAGTGGTGGAGTTTAGTAAATTTGCTACATTGAAAATTCATGGAAGGGGATTGATGGCTGGAACATTTTCTCCTTTCTAGGTAACCTAGTGACTAGAACATGAGCTAAAAATATAGTTACGATCTCTCTCTCTCTCTCTCCCTTTTCACATTCAGTAAATCTTAAGTACGTCACATCTTCAAATTTTGTGAATTTTAGTGTCTTTATTCATCTATGTATCTGGGTTGTACATTAATTTTTGTGGAGTAGGAAACAACTGGTGTGTAAGAACTTCTAAGATATTGTGAAGTGAGATGAACTAAAGTATCAGAAAAGGTGGAAGTGAGAGTAGAAACAGATAAAGAAAATTGAGCATGAATGCGAATGGAAAGATTGGGCAGAGTTCAGGATACCTTCTGAACCAAGATAATCTGTCCTATTATTACTGGTATATTATAAAGTATAAACTACAGCTTTTCTCAAGGTGGGGAAACTGTCAAATTTGTGCTAAGACCCTTTAAACCTTCTTTTGGTTGTCAAAGTTTCCTCTGCTCATTTGAAAGGGTTATTTGGCTAATTATACTTTTATCAGTTAAATTATAATTAAAATTAAGGTTAAGAACTGTGTGGATCTCATATGATATTGGTATCGTGGACATATTTTTTGGCCATCTATTTATCTCCACGCTGCTATTTCAGAAAATTACAGATGATGACCTGGTAGCACTGATGTCAGATGAGGTTTTCCAGCCTCAATTTGTGTGGCAACTTCAAAATGTACAGGTAGATATTAATGTTGACTATATCTGCACTGTTTTAACTTTGATCTGGATTAAAAAGGATGGTTCAGCTGATTGAAAGACTTCCTGCTCTATGGACAGGTTACTTCTGGAAGTCTTGGCCTTTCTACAGCAACTGTTAAGCTCATTGATGCTGATGGTCGAGAGCATATTTCTTGTTCTGTTGGAACGGGGCCAGTTGACGCGGCTTATAAGGCAGTTGATCTCATTGTTAAGGTATGAAATAGAAATGAAACTCCTAATAATAAATAATCTTGTCACAGTGCTAGGACCCATGTTGATTGCAAGCCGATCAGTATGTTATATTCAACTATAAATGGTTAATTACAAACTCATTTGGTGAATCTCTTTTATGCAAATCGTATTCATAATTATACATATACTAATATTATTTTTCCCCAGGCTATAGATGCATCAAGTTTGAGTTCTGTTGAGCAAAATATTTGGAAGCTCGTGATTTTTGATATATTGTCTTGTTGTGTCCTCTTACCTGTACTTTTTCCTCCGTCATATGTACTACATATAAAGTTGTCTTAGGGTGCACCAAGGTATGGACTAATGGTAAAAGAAGTGGGTTTAGAACTATGAGGTCTCGGGTTCAAATTCCTCAGAGACAAAACAAATAGGTGATTTCTTCTCATCTGTCCTAGCCTTAGTGGACAGATTACCTCATACCTATCCCGTGGAATTAGTCGAGTTGTCTGAAAGCTGGTCCAGACACCACGGTTATCCAAAAATAAAAGTTACCTTAGGGTCAATTGTTCTTTTGTACAACAGTATTCTTGCTGTTGAAGAAGTCGGGTCAACCCAAGTATATGTTGTACTTAAAAACTAAGAGCCTGTTTGGATTCACTTGAAAGTTGGTCAAACCTACTTTTAAGTCATTTTTAGTTTTGGGGATTGTTTGACATGGTTAAAAATAAGTTTAAAATGACCCAATCCAAACGGGCTCTAAGACTACATAATAAACCTCATGTGGAGTCCTATTCTAAAGCTAGTCCAAACCTAACCCAGCATCTAGTGCTGTATTCAATGATGACATCAGCAGACAACCCAAATCCTACATAACAAATGCAATTTTGCTATAATGTGCTGGGAAGATATTGCCGAGAATCTATTGGAAATAACCTCTCAACCTTTACAAGGCAGGGGCAAGGCTACGTACACACCACCCTCCCCAGACCCCACTTGTTTACACTGGGTGTGTTGTTGTACTGCGAAGATATCTTTTAAGAGCAGTTTTATCATTTTCCATATAATTGATGGACCTACTAGCTTTATAATAACTTCCCAAAAATAATTAAAACTATATTTGATATGCATTTTGAGTAGGAATTTTTACATTTTGAATTTGACTTACAAGCAGTTTTCTATATATCTTGAGAGAACCCAACTTTTTTGTTCGAGAAGATGGTGTTTGCCTCTAAATCAGCAGTCAAACTTGTCTCTATTTAATAATCTCTTTGGTTTAATGTGTATTATGGTCTGGTAATTCTAGTGTTCATGCATTTTGTGCAGGTACCTGTAACACTCCTTGAGTATTCCATGAATGCAGTCACACAAGGTATAGATGCTATAGCTTCAACCAGAGTCTTAATTCGTGGAGAAAATGGCCATACATCAACCCATGCCGTAACTGGAGAGACTATTCACC</genome_strand>
        <mrna_strand>ATGGAATTGGTGAAAGAGCTGGAAATGCTTCTTTAGAGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAATGGCCTTAAAGTGTCGTGGAGAGCAAGTACTAGGTGGCCTATATACAGGGATTAATACACAACATATACTCATGTCAAGCAAGATG.....................................................................................GTAGAGGAGTATTCCGGACTTCATGTGCAGCCACACAAAGCCATTGTTGGAGCTAATGCCTTTGCTCATGAAAGTGGCATCCATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAATGTTAAAACACAAAGATACATATGAGATTATATCTCCTGAAGATATTGGGCTTAATCGTGCTAATGAATCTGGTATTGTCCTTGGGAAACTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCGTCATGCTTTGCAAGCCAAAATGCTTGAG.............................................................................CTTGGATACGAGATTGAGGGCAAAGAACTTGATGACCTGTTCTGGCGATTCAAATCTGTGGCTGAGAAGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTACAGATGATGACCTGGTAGCACTGATGTCAGATGAGGTTTTCCAGCCTCAATTTGTGTGGCAACTTCAAAATGTACAG..................................................................................................GTTACTTCTGGAAGTCTTGGCCTTTCTACAGCAACTGTTAAGCTCATTGATGCTGATGGTCGAGAGCATATTTCTTGTTCTGTTGGAACGGGGCCAGTTGACGCGGCTTATAAGGCAGTTGATCTCATTGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGTAACACTCCTTGAGTATTCCATGAATGCAGTCACACAAGGTATAGATGCTATAGCTTCAACCAGAGTCTTAATTCGTGGAGAAAATGGCCATACATCAACCCATGCCGTAACTGGAGAGACTATTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332971" ref_strand="+" ref_description="SGN-E332971 [cTOD-19-N9]">
      <seq>tggaattggtgaaagagctggaaatgcttctttagaggaggttgtaatggccttaaagtgtcgtggagaagcaagtactaggtggcctatatacagggattaatacacaacatatactcatgtcaagcaagatggtagaggagtatttccggacttcatgtgcagccacacaaagccattgttggagctaatgcctttgctcatgaaagtggcatccatcaggatggaatgttanaacacaaagatacatatgagattatatctcctgaagatattgngcttaatcgtgctaatgaatctggtattgtccttgggaaactcagtgggcgtcatgctttgcaagccaaaatgcttgagcttggatacgagattgagggcaaagaacttgatgacctgttctggcgattcaaatctgtggctgagaagaaaagaaaattacagatgatgacctggtagcactgatgtcagatgangttttccagcctcaatttgtgtggcaacttcaaaatgtacaggttacttctggaagtcttggcctttctacagcaactgttaagctcattgatgctgatggtcgagagcatatttcttgttctgttggaaacgggccagttgacgcggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43351" stop="49330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43651" g_stop="43690" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43691" i_stop="44195" i_length="505">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44196" g_stop="44288" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="134" r_length="94" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44289" i_stop="44373" i_length="85">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44374" g_stop="44460" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="222" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44461" i_stop="47244" i_length="2784">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47245" g_stop="47345" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="323" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47346" i_stop="47810" i_length="465">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47811" g_stop="47844" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="357" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47845" i_stop="47921" i_length="77">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47922" g_stop="47996" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="431" r_length="74" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47997" i_stop="48740" i_length="744">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48741" g_stop="48824" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="515" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="48825" i_stop="48922" i_length="98">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.667" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="48923" g_stop="49030" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="623" r_length="108" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E332971" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43651" e_stop="43690"/>
          <exon e_start="44196" e_stop="44288"/>
          <exon e_start="44374" e_stop="44460"/>
          <exon e_start="47245" e_stop="47345"/>
          <exon e_start="47811" e_stop="47844"/>
          <exon e_start="47922" e_stop="47996"/>
          <exon e_start="48741" e_stop="48824"/>
          <exon e_start="48923" e_stop="49030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTGGTGAAAGAGCTGGAAATGCTTCTTTAGAGGAGGTGTGTGAGGGCTTTCCGCTGAGAAATTTCAGTTCTCTTATGTGCATGATTTGGGCTCCAAAATTTGAGGGGTGGAATCACTAATTAAACAACCTTGACTATAAGTTCCCCTCTGTTCTTTCCTTGAAAAAAAGTTAGGTCTTCAAAGAAATTTCCCATAATTGCGTAAGGCATTCTCCACACAAAAGGAACTATTCCACCTCTTCCTAGAGTAAATTAACATCTTTAATTTAGACTGAATGACTGATACTAGAGTAGAAGTTGTGTGGTATGTAATATTATTCTTTTGCAAAACAATAGTTGCAAACATGCAACCGTATTTTGCCATTTTGGTCTTTGGAGCCAATTTCTGCCATTGGTTGTGTTATGTGCTGTTTAAACTGACAAACTACTGACGTTCATGAGACTCCTTTTTCCTCTGTGGTACTTGTTTGTCTTTGGTTTTCATCTTGGGCATGTCGGGCCTTCATTTTCTAACCTTTTACCATGTCCAATGCCGGAATAGGTTGTAATGGCCTTAAAGTGTCGTGGAGA-GCAAGTACTAGGTGGCCTATATACAGGGATTAATACACAACATATACTCATGTCAAGCAAGATGGTTTGTACCCCTACTATCTCATAGTATGGTGATCTTTTACTGGTTAATATTCTTCCAATATGCATTCTGACCCTTTATCGTGCAGGTAGAGGAGTA-TTCCGGACTTCATGTGCAGCCACACAAAGCCATTGTTGGAGCTAATGCCTTTGCTCATGAAAGTGGCATCCATCAGGTTTGTGTAATTTGCTCTCGTTTATTGTTGAAAGAAACAATTCCTGAAAGAGGCAAATCTTCTTACCAGTTTATGGACATCTTTTCTTTTCAACGATCAACCAAATTACTGATGGAATGGTGTTCCAAGTTCCCTGATTTACTTCCCCAGACCTCATAGATTTCAGCTTAACAGCAGCTCTTCTGTAGTCCTGAGAAAGAGACTCTAGCTCTATGAGTTGAAGGAGCAATGAAGAAATAAATGGTTGAGTCGTCACTTTGCTTTCAACGAAGGCAAACCAAATACATATATTGAAACCCCTTTTCTGAAGATTTTCATGTTTAGGGCGAGGTTCTTTTGTCATCAACCAAGCAAAACAATCGAACTTTCAGAGGTTCCCTATTTTCCCAAATGCATTTCCAAGGCCAATTTTCAATGACAGCGGGATTTATCCCTGATAACAGGATTTGACCGTGAAAATTCCGTTAAGATCATATTTTCACTTTAGAGAATCAGACCGGAGTTGAAGGGTGGGGGGTGGTTCTATGGCGTCTGAGAAGCAAAAAGCACAGTTATCCAATTCCCAATCATTAATATTGAGCATGAATCTGATGTTCCAGCCTTTTTCACTCCTGTAATCTGACAGAGATGCTTCAGAATTTGGCGCCATAGTGAATAATGTTGGGTACTGGTTTTTGGAGGTTATTGCACAAGTCACATATCTATCCAAGACCTTACTTTCCAGCCATTTTCAATTACAGTTGAGGTCTTGGATAGAAAGAGTCCTACTGTGCACTCATATGCCTCCATACACCACATGAATTAGGAAAATTTGGATGTTTCGTAATCCATGGGTTGGAAAGTCTGTATTTAGCCGTAATAACATCTCTCCATAAAGCTCCCTCCTCCCTATTAAATCTCTAGAGCCGTTTGTGTTGCAAGAAAATACTATGAACCCTCAGATATTTGTTCCCCATGCCCCCAGCCTTCTTGTCAGTAGAAACCGTATCCCTTTTTGAAAGACTTGTTTTGTCTATTCCCTTGTCACAGAAAATCCCTTTACACACTATTGATTAGTACTAGCCTACCTTCCAATGAGTGATGTTATGATAACTTCCTTTTTGCACTTTTCCTCCCATCCCAGATTGTAGTGGCTTGAGACTTTGACCCCAAAGGAAGGCTGAAAGCCTAATTGTTTAATGGGAAAAGAGCCTACTCCACAACTCAAGGTGTCAGCTATTTCCTATAAGTTGATCATTTCGTTCACAGGACAAAAAACACTCTTTGTATAATTAACTTGAAGACCATAATTCGCTTTGAAGAACAAAGTACCATATGAAGTTGTACAATCTGATCATTTCAGTTTTGCAAAAAAAATAAAATAAAAAAATAGAGTGAATCATCTGCATAGAAAAGGCAAGTAAGATGCAGTTTTCCTTGATTTCTCAGACTTGGGTTAAAGCCTTTTATCTTGTCATGTAGTTTTGCTGTTGACAACATTCTTCTTAGACATAACATATCCAAGATAAACAGAAAAGGAGAAAGCGAATCTTCTTGTCTAAAACCTTTTGGTGAAGCAAAAAAGTCTTTAGGTGATCCATTTATGATAATGGATGACATGACAATGGAGATGCAAAATTGGATCCACTTGATTTATTTATTGCCGGAGCTCATGAATTTTAATATGTTGACAAGGATAGGGTGGCAATGGGGCAGGTCATGGGCGGGGCTGGGCAGGGTAAAGAATTAACTTGGCAGGGTGGGGCAATATTTAAATGGGGCAGGGCAGGACAGGTCATAGCTAATATTTTTTTAAAATTTTAATAGTGCAGGGCAGGTGTGAGTTCATGAGAGGTTCCTTAGTGTTTTGAACACTGTAGCTTGCTAGCAATGCTTAGGTTGAATCCCGAAGGAAGTTTTCCGATGTTTCTGAGCATATAATTATCCTTTATTCGGGTTATTTGATTAACAAAAAATTTAAGAATTCATTTGCGTTTTGAACACTGTAGCTTTTTACTTATATTTAACCAGTTTATCACTTTGTGTTATTTAAAAGTTAAACAGAACATTAAAAAGTGGGAAAAATAAATTAACACTTAAATGGGGCAGGGCGGGCAAAATGTTGGAAAATTCTAGGCAGAGCAGGGTAGGGCGGGTTAAATTCTTAACGGGTCAAGGCTTGCTCAGCGCTAGCCATCCCTATCGCCATCCCTGGATAAGGGATTCCAATGAACGTTGTCAAAGACTTTCTCGCTCACAGCTTAACGTGAGACGTTTAAGATAAACTGAGAAGCCTCAAAGACCCAACAAACAATTAGAAGTTGCTCCAAGTTTTCCTTCTTGGGGCATTAGATTATAATAAACATTTGGTACCAATATTCCAGGAGGTGCAGAGATATTATACCTACTGACGTAAAAGAACTTCCATCAGGAGTTTGAATCTGCTTACTCTTTTATATTTCTGATTATTCATTTGTTTATGGCCCTTCTCATTTTAGATGTGTAGTTACTGATCTTATATTTGAATATCTATGGATAAATCTTCCACATATTTAGTTAGAGCTCGATTAATTGTCCTGTTAGCATTTGTTTTTGATTCATCTTCAAATGCATAAAGTTTTTCAGTTAAACTTCTTTGAATATATGTAGTATATTATGTCTCTCCTCCCGTTTCTTCCTTACCTCAAAGCTGGATTCGCACCTTTTTGTAACCGTTCAGTTGTGAATCAAAAAAAAAAGGAAAAAATATTTCAGTTTTTCCTTTTCAATCTCTTCTCCTTCTTAAACTACTTTTATGCTCTTTAGGATGGAATGTTAAAACACAAAGATACATATGAGATTATATCTCCTGAAGATATTGGGCTTAATCGTGCTAATGAATCTGGTATTGTCCTTGGGAAACTCAGGTATGTGATTTACCAATCAATGCTTATTGCTGTGATAGCTTAAGTGTTAGATTTCTGCGCTGTTTGAGTTTTTAGTTTTTATCCCTTGATTATTGAACTTGCTTAGCAAAGTACATTCTTTTAGTTGCTATGAGGTTAGTATTTCTTTAGTACTTGAGTAAGGCTTCCCTGATCCATAGACACTCACACAGTTGCTGTTTCAAATAGTGAATCATACCTTTGTTGTTTTAAAACAGTGTGGAGGTATATAGGAACTTCCTCTCTTCTATGGAGAGGTAAAGTAGAAGCTTATTGAGTTTGCCTCACTTTAATATGGTCAGAGCCACAATTGCATGAAATAATTATCATCACAGTCTGTAACTTAATCCCTCTCGTGCCCTCCTTCCTAACCTGCTCTATTCATTATTTACATTGAATTACATCATGTCTTCAAGGAAATTGATACGTTGAACATTTTTTTTGTAGTGGGCGTCATGCTTTGCAAGCCAAAATGCTTGAGGTAAATTGCATGCTCTGAGAATTTTGTTTATTTCTTAAATTTAAGAGCACGAGACAAATCGTTTTAGTCCTATGCAGCTTGGATACGAGATTGAGGGCAAAGAACTTGATGACCTGTTCTGGCGATTCAAATCTGTGGCTGAGAAGAAAAAGGTGAATTAAGATTTTGAAATTTCCACTGTTGTTTGGTATATTTACGTCATCATTCAAATGCATTTGGAGTGGTGGAGTTTAGTAAATTTGCTACATTGAAAATTCATGGAAGGGGATTGATGGCTGGAACATTTTCTCCTTTCTAGGTAACCTAGTGACTAGAACATGAGCTAAAAATATAGTTACGATCTCTCTCTCTCTCTCTCCCTTTTCACATTCAGTAAATCTTAAGTACGTCACATCTTCAAATTTTGTGAATTTTAGTGTCTTTATTCATCTATGTATCTGGGTTGTACATTAATTTTTGTGGAGTAGGAAACAACTGGTGTGTAAGAACTTCTAAGATATTGTGAAGTGAGATGAACTAAAGTATCAGAAAAGGTGGAAGTGAGAGTAGAAACAGATAAAGAAAATTGAGCATGAATGCGAATGGAAAGATTGGGCAGAGTTCAGGATACCTTCTGAACCAAGATAATCTGTCCTATTATTACTGGTATATTATAAAGTATAAACTACAGCTTTTCTCAAGGTGGGGAAACTGTCAAATTTGTGCTAAGACCCTTTAAACCTTCTTTTGGTTGTCAAAGTTTCCTCTGCTCATTTGAAAGGGTTATTTGGCTAATTATACTTTTATCAGTTAAATTATAATTAAAATTAAGGTTAAGAACTGTGTGGATCTCATATGATATTGGTATCGTGGACATATTTTTTGGCCATCTATTTATCTCCACGCTGCTATTTCAGAAAATTACAGATGATGACCTGGTAGCACTGATGTCAGATGAGGTTTTCCAGCCTCAATTTGTGTGGCAACTTCAAAATGTACAGGTAGATATTAATGTTGACTATATCTGCACTGTTTTAACTTTGATCTGGATTAAAAAGGATGGTTCAGCTGATTGAAAGACTTCCTGCTCTATGGACAGGTTACTTCTGGAAGTCTTGGCCTTTCTACAGCAACTGTTAAGCTCATTGATGCTGATGGTCGAGAGCATATTTCTTGTTCTGTTGGAACGGGGCCAGTTGACGCGGCT</genome_strand>
        <mrna_strand>TGGAATTGGTGAAAGAGCTGGAAATGCTTCTTTAGAGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAATGGCCTTAAAGTGTCGTGGAGAAGCAAGTACTAGGTGGCCTATATACAGGGATTAATACACAACATATACTCATGTCAAGCAAGATG.....................................................................................GTAGAGGAGTATTTCCGGACTTCATGTGCAGCCACACAAAGCCATTGTTGGAGCTAATGCCTTTGCTCATGAAAGTGGCATCCATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAATGTTANAACACAAAGATACATATGAGATTATATCTCCTGAAGATATTGNGCTTAATCGTGCTAATGAATCTGGTATTGTCCTTGGGAAACTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCGTCATGCTTTGCAAGCCAAAATGCTTGAG.............................................................................CTTGGATACGAGATTGAGGGCAAAGAACTTGATGACCTGTTCTGGCGATTCAAATCTGTGGCTGAGAAG-AAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTACAGATGATGACCTGGTAGCACTGATGTCAGATGANGTTTTCCAGCCTCAATTTGTGTGGCAACTTCAAAATGTACAG..................................................................................................GTTACTTCTGGAAGTCTTGGCCTTTCTACAGCAACTGTTAAGCTCATTGATGCTGATGGTCGAGAGCATATTTCTTGTTCTGTTGGAAACGGGCCAGTTGACGCGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732107" ref_strand="+" ref_description="SGN-E732107 [LB01BB11]">
      <seq>acgtgattgagggcaaagaacttgatgacctgttctggcgattcaaatctgtggctgagaagaaaaagaaaattacagatgatgacctggtagcactgatgtcagatgaggttttccagcctcaatttgtgtggcaacttcaaaatgtacaggttacttctggaagtcttggcctttctacagcaactgttaagctcattgatgctgatggtcgagagcatatttcttgttctgttggaacggggccagttgacgcggcttataaggcagttgatctcattgttaaggtacctgtaacactccttgagtattccatgaatgcagtcacacaaggtatagatgctatagcttcaaccagagtcttaattcgtggagaaaatggccatacatcaacccatgccgtaactggagagactattcaccgtacatttagtggaaccggagcagatatggatattgtcatctccagtgtccgagcctatgttggtgcattgaataagatgatgagtttcagaaaactaatggcgaaaaataacaaacccgaaagcagtgcagtcgtataggtacttctgtgcaaatcaaggttatggaacttttgcaactgcactggagctttatcatttgtacaaaatgtaggagtctgttcaaagaatttgagcctgtagttttcaagaaaacaaagcttaatatgtctggtagtgcttgaaaatcatctaagtttatggtgtatcagttggaacattagacacattgtccatataactttgttcatgctcccgtttaactaatttatgaatctacataccacgcaagattttcgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47629" stop="51777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47929" g_stop="47996" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47997" i_stop="48740" i_length="744">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48741" g_stop="48824" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="152" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48825" i_stop="48922" i_length="98">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.667" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48923" g_stop="49057" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="287" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49058" i_stop="50359" i_length="1302">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50360" g_stop="50505" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="433" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50506" i_stop="51087" i_length="582">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51088" g_stop="51462" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="808" r_length="375" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="821" polyA_stop="833"/>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E732107" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47929" e_stop="47996"/>
          <exon e_start="48741" e_stop="48824"/>
          <exon e_start="48923" e_stop="49057"/>
          <exon e_start="50360" e_stop="50505"/>
          <exon e_start="51088" e_stop="51462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGATTGAGGGCAAAGAACTTGATGACCTGTTCTGGCGATTCAAATCTGTGGCTGAGAAGAAAAAGGTGAATTAAGATTTTGAAATTTCCACTGTTGTTTGGTATATTTACGTCATCATTCAAATGCATTTGGAGTGGTGGAGTTTAGTAAATTTGCTACATTGAAAATTCATGGAAGGGGATTGATGGCTGGAACATTTTCTCCTTTCTAGGTAACCTAGTGACTAGAACATGAGCTAAAAATATAGTTACGATCTCTCTCTCTCTCTCTCCCTTTTCACATTCAGTAAATCTTAAGTACGTCACATCTTCAAATTTTGTGAATTTTAGTGTCTTTATTCATCTATGTATCTGGGTTGTACATTAATTTTTGTGGAGTAGGAAACAACTGGTGTGTAAGAACTTCTAAGATATTGTGAAGTGAGATGAACTAAAGTATCAGAAAAGGTGGAAGTGAGAGTAGAAACAGATAAAGAAAATTGAGCATGAATGCGAATGGAAAGATTGGGCAGAGTTCAGGATACCTTCTGAACCAAGATAATCTGTCCTATTATTACTGGTATATTATAAAGTATAAACTACAGCTTTTCTCAAGGTGGGGAAACTGTCAAATTTGTGCTAAGACCCTTTAAACCTTCTTTTGGTTGTCAAAGTTTCCTCTGCTCATTTGAAAGGGTTATTTGGCTAATTATACTTTTATCAGTTAAATTATAATTAAAATTAAGGTTAAGAACTGTGTGGATCTCATATGATATTGGTATCGTGGACATATTTTTTGGCCATCTATTTATCTCCACGCTGCTATTTCAGAAAATTACAGATGATGACCTGGTAGCACTGATGTCAGATGAGGTTTTCCAGCCTCAATTTGTGTGGCAACTTCAAAATGTACAGGTAGATATTAATGTTGACTATATCTGCACTGTTTTAACTTTGATCTGGATTAAAAAGGATGGTTCAGCTGATTGAAAGACTTCCTGCTCTATGGACAGGTTACTTCTGGAAGTCTTGGCCTTTCTACAGCAACTGTTAAGCTCATTGATGCTGATGGTCGAGAGCATATTTCTTGTTCTGTTGGAACGGGGCCAGTTGACGCGGCTTATAAGGCAGTTGATCTCATTGTTAAGGTATGAAATAGAAATGAAACTCCTAATAATAAATAATCTTGTCACAGTGCTAGGACCCATGTTGATTGCAAGCCGATCAGTATGTTATATTCAACTATAAATGGTTAATTACAAACTCATTTGGTGAATCTCTTTTATGCAAATCGTATTCATAATTATACATATACTAATATTATTTTTCCCCAGGCTATAGATGCATCAAGTTTGAGTTCTGTTGAGCAAAATATTTGGAAGCTCGTGATTTTTGATATATTGTCTTGTTGTGTCCTCTTACCTGTACTTTTTCCTCCGTCATATGTACTACATATAAAGTTGTCTTAGGGTGCACCAAGGTATGGACTAATGGTAAAAGAAGTGGGTTTAGAACTATGAGGTCTCGGGTTCAAATTCCTCAGAGACAAAACAAATAGGTGATTTCTTCTCATCTGTCCTAGCCTTAGTGGACAGATTACCTCATACCTATCCCGTGGAATTAGTCGAGTTGTCTGAAAGCTGGTCCAGACACCACGGTTATCCAAAAATAAAAGTTACCTTAGGGTCAATTGTTCTTTTGTACAACAGTATTCTTGCTGTTGAAGAAGTCGGGTCAACCCAAGTATATGTTGTACTTAAAAACTAAGAGCCTGTTTGGATTCACTTGAAAGTTGGTCAAACCTACTTTTAAGTCATTTTTAGTTTTGGGGATTGTTTGACATGGTTAAAAATAAGTTTAAAATGACCCAATCCAAACGGGCTCTAAGACTACATAATAAACCTCATGTGGAGTCCTATTCTAAAGCTAGTCCAAACCTAACCCAGCATCTAGTGCTGTATTCAATGATGACATCAGCAGACAACCCAAATCCTACATAACAAATGCAATTTTGCTATAATGTGCTGGGAAGATATTGCCGAGAATCTATTGGAAATAACCTCTCAACCTTTACAAGGCAGGGGCAAGGCTACGTACACACCACCCTCCCCAGACCCCACTTGTTTACACTGGGTGTGTTGTTGTACTGCGAAGATATCTTTTAAGAGCAGTTTTATCATTTTCCATATAATTGATGGACCTACTAGCTTTATAATAACTTCCCAAAAATAATTAAAACTATATTTGATATGCATTTTGAGTAGGAATTTTTACATTTTGAATTTGACTTACAAGCAGTTTTCTATATATCTTGAGAGAACCCAACTTTTTTGTTCGAGAAGATGGTGTTTGCCTCTAAATCAGCAGTCAAACTTGTCTCTATTTAATAATCTCTTTGGTTTAATGTGTATTATGGTCTGGTAATTCTAGTGTTCATGCATTTTGTGCAGGTACCTGTAACACTCCTTGAGTATTCCATGAATGCAGTCACACAAGGTATAGATGCTATAGCTTCAACCAGAGTCTTAATTCGTGGAGAAAATGGCCATACATCAACCCATGCCGTAACTGGAGAGACTATTCACCGTACATTTAGGTATGAAATGTACCAGCCATGTTGTTTGCATTTATTCTTCTTTCGCTGATAGAACCTAGGGAACATGGAGAGAGAGGGAGGGGGGCATGTAGGTGTTGACACAGTAAATTTTAGAATTGGCGACATGACATCAATGAGCCAAATTTATATGTTTTCAATAAAGCATAACCACAGTAGTCACAAGATTCATGTTTACTCTCCCCTTCTCTTCACCATTCTTCTATAATGCAGCCTTCACCCAACAAAAGATCAACTTCCAGGCCTCTTGCTTATTTTCTCCATTGACTGCCCTCACCCTTTGTGTTTCCTCATCACTGCAACCCCTCACATGACTGCTCCCAACTGTTACTCTCGTGCCTCCAAGTTCTTTCTTCAATCTCCCATTTTTCCATTAGACTTGTCCAAAAGAAACACCAGTGTTAGTGTGTGTATCAAGTAGAAGAGTCAAAATCCGTAGTAGATATGCTTGGCTGGATGTCAATCATGTGTTCAACGTCACTTTTTTCTGGGGCAAGTCTGTGAAATATCACCTTTCATTTCTCTCATTAGAAAAGGCTTTTTATATCTTCTATCTTCTTCCAGTGGAACCGGAGCAGATATGGATATTGTCATCTCCAGTGTCCGAGCCTATGTTGGTGCATTGAATAAGATGATGAGTTTCAGAAAACTAATGGCGAAAAATAACAAACCCGAAAGCAGTGCAGTCGTATAGGTACTTCTGTGCAAATCAAGGTTATGGAACTTTTGCAACTGCACTGGAGCTTTATCATTTGTACAAAATGTAGGAGTCTGTTCAAAGAATTTGAGCCTGTAGTTTTCAAGAAAACAAAGCTTAATATGTCTGGTAGTGCTTGAAAATCATCTAAGTTTATGGTGTATCAGTTGGAACATTAGACACATTGTCCATATAACTTTGTTCATGCTCCCGTTTAACTAATTTATGAATCTACATACCAC</genome_strand>
        <mrna_strand>ACGTGATTGAGGGCAAAGAACTTGATGACCTGTTCTGGCGATTCAAATCTGTGGCTGAGAAGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTACAGATGATGACCTGGTAGCACTGATGTCAGATGAGGTTTTCCAGCCTCAATTTGTGTGGCAACTTCAAAATGTACAG..................................................................................................GTTACTTCTGGAAGTCTTGGCCTTTCTACAGCAACTGTTAAGCTCATTGATGCTGATGGTCGAGAGCATATTTCTTGTTCTGTTGGAACGGGGCCAGTTGACGCGGCTTATAAGGCAGTTGATCTCATTGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGTAACACTCCTTGAGTATTCCATGAATGCAGTCACACAAGGTATAGATGCTATAGCTTCAACCAGAGTCTTAATTCGTGGAGAAAATGGCCATACATCAACCCATGCCGTAACTGGAGAGACTATTCACCGTACATTTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCGGAGCAGATATGGATATTGTCATCTCCAGTGTCCGAGCCTATGTTGGTGCATTGAATAAGATGATGAGTTTCAGAAAACTAATGGCGAAAAATAACAAACCCGAAAGCAGTGCAGTCGTATAGGTACTTCTGTGCAAATCAAGGTTATGGAACTTTTGCAACTGCACTGGAGCTTTATCATTTGTACAAAATGTAGGAGTCTGTTCAAAGAATTTGAGCCTGTAGTTTTCAAGAAAACAAAGCTTAATATGTCTGGTAGTGCTTGAAAATCATCTAAGTTTATGGTGTATCAGTTGGAACATTAGACACATTGTCCATATAACTTTGTTCATGCTCCCGTTTAACTAATTTATGAATCTACATACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224934" ref_strand="+" ref_description="SGN-E224934 [cLEL-27-P24](-)">
      <seq>agtgtccgagcctatgttggtgcattgaataagatgatgagtctcagaaaactaatggcgaaaaataacaaaccccaaagcagtgcagtcgtataggtacttctgtgcaaatcaaggttatggaacttttgcaactgccctggagctttatcatttgtacaaaatgtaggagtctgttcaaagaatttgagcctgtagttttcaagaaaacaaagcttaatatgtctggtagtgcttgaaaatcatctaagtttatggtgtatcagttggaacattagacacattgtccatacaactttgttcatgctcccgtttaactaatttatgaatctacataccacgcaagatttttgaaatgatttcaggaattatgtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50822" stop="51798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51122" g_stop="51497" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="377" polyA_stop="393"/>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E224934" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51122" e_stop="51497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTCCGAGCCTATGTTGGTGCATTGAATAAGATGATGAGTTTCAGAAAACTAATGGCGAAAAATAACAAACCCGAAAGCAGTGCAGTCGTATAGGTACTTCTGTGCAAATCAAGGTTATGGAACTTTTGCAACTGCACTGGAGCTTTATCATTTGTACAAAATGTAGGAGTCTGTTCAAAGAATTTGAGCCTGTAGTTTTCAAGAAAACAAAGCTTAATATGTCTGGTAGTGCTTGAAAATCATCTAAGTTTATGGTGTATCAGTTGGAACATTAGACACATTGTCCATATAACTTTGTTCATGCTCCCGTTTAACTAATTTATGAATCTACATACCACGCAAGATTTTCGAAATGATTTCAGAAATTATGAAA</genome_strand>
        <mrna_strand>AGTGTCCGAGCCTATGTTGGTGCATTGAATAAGATGATGAGTCTCAGAAAACTAATGGCGAAAAATAACAAACCCCAAAGCAGTGCAGTCGTATAGGTACTTCTGTGCAAATCAAGGTTATGGAACTTTTGCAACTGCCCTGGAGCTTTATCATTTGTACAAAATGTAGGAGTCTGTTCAAAGAATTTGAGCCTGTAGTTTTCAAGAAAACAAAGCTTAATATGTCTGGTAGTGCTTGAAAATCATCTAAGTTTATGGTGTATCAGTTGGAACATTAGACACATTGTCCATACAACTTTGTTCATGCTCCCGTTTAACTAATTTATGAATCTACATACCACGCAAGATTTTTGAAATGATTTCAGGAATTATGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229911" ref_strand="+" ref_description="SGN-E229911 [cLEL-33-M3](-)">
      <seq>tgtccgagcctatgttggtgcattgaataaaatgatgagtttcagaaaactaatggcgaaaaataacaaatcccaaagcagtgcagtcgtataggtacttctgtgcaaatcaaggttatggaacttttgcaactgcactggagctttatcatttgtacaaaatgtaggagtctgttcaaagaatttgagcctgtagttttcaagaaaacaaagcttaatatgtctggtagtgcttgaaaatcatctaagtttatggtgtatcagttggaacattagacacattgtccatataactttgttcatgctcccgtttaactaatttatgaatctacataccacgcaagattttcgaaatgatttcagaaattatgaaaatctctgtattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50824" stop="51810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51124" g_stop="51503" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="386" polyA_stop="403"/>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E229911" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51124" e_stop="51503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCGAGCCTATGTTGGTGCATTGAATAAGATGATGAGTTTCAGAAAACTAATGGCGAAAAATAACAAACCCGAAAGCAGTGCAGTCGTATAGGTACTTCTGTGCAAATCAAGGTTATGGAACTTTTGCAACTGCACTGGAGCTTTATCATTTGTACAAAATGTAGGAGTCTGTTCAAAGAATTTGAGCCTGTAGTTTTCAAGAAAACAAAGCTTAATATGTCTGGTAGTGCTTGAAAATCATCTAAGTTTATGGTGTATCAGTTGGAACATTAGACACATTGTCCATATAACTTTGTTCATGCTCCCGTTTAACTAATTTATGAATCTACATACCACGCAAGATTTTCGAAATGATTTCAGAAATTATGAAAATCTCT</genome_strand>
        <mrna_strand>TGTCCGAGCCTATGTTGGTGCATTGAATAAAATGATGAGTTTCAGAAAACTAATGGCGAAAAATAACAAATCCCAAAGCAGTGCAGTCGTATAGGTACTTCTGTGCAAATCAAGGTTATGGAACTTTTGCAACTGCACTGGAGCTTTATCATTTGTACAAAATGTAGGAGTCTGTTCAAAGAATTTGAGCCTGTAGTTTTCAAGAAAACAAAGCTTAATATGTCTGGTAGTGCTTGAAAATCATCTAAGTTTATGGTGTATCAGTTGGAACATTAGACACATTGTCCATATAACTTTGTTCATGCTCCCGTTTAACTAATTTATGAATCTACATACCACGCAAGATTTTCGAAATGATTTCAGAAATTATGAAAATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717453" ref_strand="+" ref_description="SGN-E717453 [FC01BA12]">
      <seq>gggcgattggcggccaatcggccgaattcccatggggatccgatcgatagagagagaaatgggtgtgatccaggtagcattgctgtgctttgttgttggagttttgggggcaaaagctgagcagttgagcacgaaagagtgtgaaaatctcgggtttacgggtttagctctatgctccgattgtaggactcttgctgagtatgtcaaagatcaagagttggtgtctgaatgtttgagctgttgcacagaagactctgatgatgccatgagtaaggttgtttattctggagcagttttggaagtctgcatgagaaaactagttttctatcccgaagtcgttgggttcattgaagaagagaaagaccaattcccttttgtaaaagttcaatatgcatttaattctccaccaaagttgatcatgttggatgatcacggagagcaaaaggaaaccattagaattgataactggaaacgtgagcacatattgcagttcttgaaagagaaggttaagccatcatccgatatctaatgtggctggtaatctagtcccgttttgatcaagagcagtgttaagtgttcagcctgcatctagtttcagaaaactccagttccccacttattgtttttaagaaactgtgagatgagattaattgctacacacaagttcaaaagctactttcatttacaaaacatgcaactggatccttgtgcttttgacgtatcgtttggtttcgtcagtcctgctctctctctctctctctttttctataactttctttaattactcattaccagattattgttaggaataccccagagaaaggaacacatcatattatgaaggataattacatgaggagttggaatatccagttagctgtgcaagcctgcttctctataata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80820" stop="87583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81123" g_stop="81289" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="215" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81290" i_stop="85028" i_length="3739">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85029" g_stop="85087" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="274" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85088" i_stop="86174" i_length="1087">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86175" g_stop="86356" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="456" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86357" i_stop="86836" i_length="480">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86837" g_stop="87283" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="903" r_length="447" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E717453" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81123" e_stop="81289"/>
          <exon e_start="85029" e_stop="85087"/>
          <exon e_start="86175" e_stop="86356"/>
          <exon e_start="86837" e_stop="87283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAAATGGGTGTGATCCAGGTAGCATTGCTGTGCTTTGTTGTTGGAGTTTTGGGGGCAAAAGCTGAGCAGTTGAGCACGAAAGAGTGTGAAAATCTCGGGTTTACGGGTTTAGCTCTATGCTCCGATTGTAGGACTCTTGCTGAGTATGTCAAAGATCAAGGTTCTTTCTAAAACTCTCCATCTTTTGTTGTCTCTCTATATATGTAAATTAAATGCAGATAATTTCTGGGTTTTTGTTAAATTTAGTGTATGAGTAGTGGGGTAAAAGGTTTGTGGGATTGAGGGAATTTATTGACCTTGACATTGTTTTCAAGGAGACTGAAGATGAGTTTTGATCTTTTATAAGTTTTGGATATGAGATGGCCTCAGGTGTAGTTTTTATAAGGTTAGAGCAAATGGGTTCAGAAGGGGATGATTAAAAGAGCTATATCCAGGGCTGATTAGCTTCCTGAATGAGTTGGAGAAAAAACCTTGAAGACTGCAGTTTAATTGAAAGAGAACAGGGAACTGGAGGAATTGGATATAAGGGCTTAGATTAAAAAAATCAAGTGATATTGTTTATCTTATATGTGGAGAACCTTGTAATGGAAGAAATTCGGTAAAGAACCATAAACAAGATCAGAATTCTTTTTTTTAAGAGTTACAGAATCCTACACTAGGTAATAGCATAAGTGGGAGATCTCTCTCCCTCTTCGTGCATGCCAAACAACTTTTACATACTAATCTCTTAGAAAATATGACAATATTGACAATGAACCTAAGGAGAACATAAGCAACTTATCAAATAAACCTGTGCCATGGTGAGCCACTGCTTTGAAAGCAATTTCGGCTTAACTAGGGTGGTAATCGTGTGAGACTGGTCACTGGTCACTCCTAAAGTCATGGCTAGAAGTTTGGAGTTTGCAGAAATACAATTGAGAGTAACAAGATTGAGAAGAACAACTTTGAGGGAATGAGAGGGTTCTTTCGTAATTGATAATTCACAAGATTGGTTTAGCTTTGGAAAGACTATAACCCTTTTCTTCTTTTTTTGTAAATATGGTTTTTGAATACTACCTATGTACTGACCGAAATAAAAATGTTACTAGTGTCAAAAAAAAAAAAGGGCTACTTCTATAGGCTAAGTTGTTGAGTTATTATAGAAACAAAAAATTATTCAAAGAGTTGGGTTACAAAATTTGTTTTGGTGCAATTACATAGTGCAAGAAAATGATAAGAAAAAAAAGTCAGGCTAAAAGGGTGAGCCATTCCACAACGCGCACGCATCAAGACCATGAGTCGAGCTAGGCGACATATTTTGTAATTACCTATTTAAGGTGATGTCCTTGGTAAGTTGAAATTGTGTCATGTTGTGTACTTTTCCCTAATCACGTCTCATCAATACTTCTTTGGTCTACTCTACATCTCATGAAACCACGCATGGCCAACCTCTCGCCATCCGTGCATCTCGCCACATGCCCGAATCATCTCAGTCTTGCTTTCCTCCTCTTGTCCTCCACCAAAGTCACTCCCACCTAGTACCGGATATCCTCATTTGTAATCTTACCTCATTATGCCCACACATCTATCACATCATCCTCATATCTGACACTATCTTTCTGAATGTGAGAGTTCTTGACTAGAACACTTTGCTGTATACTACAAAGCTGGTTTAACTACCACATTGTAGAATTTGTCTTTTAAGTGTTTGTGCACTTTCTTATTACACATGACTCCAAATGTGAGCCTCCATTTCAGCAACCCTGCACCAATATGGTGAGTGACGTCATCGTCAATCTCCCAGTTACCTTGGATAATAGATCCAAGATACTTGAAACTTCCTCTCTTTTGCTTGACCATTGTATCGTGAGCCCTTTAGAAAGACTACCCAAGTCTTCCGTAAAAGGCAACCAAACCTTTATGATCATGTAGGTGATTCCATCGAGTCTATCTCAACACATGCATTAAGTGCAAAATGAGCTCAATCTTACAAAGTACCAAGAGACTTCAGAGGGATAGGAAATGTAGTGCATATCGAAGGCTCGTATAACTTCATTTGATCACAGATTGTTACCTTTGCCTTAGTGGGGAAATGTTGGTTTTATTCAAAATTTGTTGGTAATGCGAAGCCATAGAATTGTTTGTCGCTCCCTTTTGCACTGCTCTGTCTTGTGTAGTAGACAAAAGTTCCGTTTAGAAAGATTAAATTTATTGTGAGCACTTTATACACAAACTTTTCTTATGGGATTAGTTGAGTTCCCTCCATGCTTGTTGAGGCGAAACTTGACAACCACACACGTATCGCTGCCCTCTCCATTCGTCCGACTCAGCTCGTGAGGCGTGCGCGATGCAACTGCTGCAAAATGAATTTTGTAACTGCTACTTGAATAAGTCCGATAACAACAGAGTTTATTTTCTATAACAGCTACAAATTAATTCGTGTAAAGTTGTAGTTGTTTCTTTCATAACAACTCTAGCAGATGGCCTAGAAAAGCGGATCTGTATGAATTATCAAATACAGAAAAAAGTCATTCTCATTTCCTCAAAGTCGTTGGGCAATCGTATTTATGCGAACTCCAAACTTTCAACCACGAGTGCTCGTTTTGGGATTGCGCCTGTAACTTGGGGATCAACCAGTCTCAAACAATTTACATCATGGTTTAGGCCGAAATCACTTTCATGGGAGTGGCTCTCTATGACACAATGTTTTATTCAATAAGTTGCCTCTGTTACTGTCAATAGTTTCCAAATCATGCTTACTCGGCTTTTCTGCTGGGCACCAGTAATGGTATTTGATATTTGCTGTAACTCATCCAAGAAGAGATTTTTCCTACATACATGGATAATTAAGATTTGTTGTTTTTGCTCTAGGCAACCAAATGTTTGATACTTGCTTTTAATCACAGCTGTGTTTGGATTTGTTTAACTAGTTCTAGTCTGGGAAAGAAACAATAATGGACCAATATCAGGAGTCAATCTAAAGCCCGAATTAATGATGTACTGCTACATAAAAACTATCATTATGGGGCAAACAAACCTGCAATGATTTATCTATGCTATAAATATCAAATAGCTTAAGGATCACTACACCATGTACCCAGTTGGTGGGATTTCGATAAGTTTGAAAATTTCAAGGAAAAGATCATACAAGTACTAAATTGACATTGAAAAGCTTTGTGGAACATTGGTAAAAACGATCTGGAAGGTAGTGGAAATACCAGCTTACTCGCTTATCTTTAGTGTTGCAAATTCACAAATATTTTGCTTCAATTATGCAACCCTCTGTAAGTGCATGAATAACTTTTTCATTTTTTTCTTTAATGTATGCATTTCACATTTGCTACCTCTGTATCTTTGCCCTCATCCTTGCACTGCAAAAAAGTTTTCTTAATTTCTATGCAAATACTGGGACCTCTAAAAAAATTGGGATGTATTGTTTGCTGAACTTAAGTCTTAATGTGAAAGGATTATATGGATATCTAAAAGCCGTGTATCGTGCTGTCTGATTGTGATTAGAAATGTTTGAACTTATTTAACCTTTCACCATGTCCTGTAAATTGAATACTGAATTTGACTAATCATTATGATTTATTGAGAAAAAGGACTATGCATAGTTAGAGAGAGCAATTTCATCAAATGAAAAGAGGAAAAAAACTAGAACCATGGCGCTAATTTAGAAAACTTGACCAAATAAAGTATATTAATAGAAGTCATGCTCCATATTTGGATGCAGGAGCTATTGCTGTTTTATTGGTTCTTTCCTCTTTTTTTTGTGGATTGTTAGGAGTTTATAATGACCTAATGGACTGCTCTTCTCTCCATGTCCTTGTGTAATTATTTTTTCCTAATTTGATTTCAAATGCATGTTGACAAGTATAATTATTTCTTGCTAAACAGTATTGATTACCTGTTTCCTACAGAGTTGGTGTCTGAATGTTTGAGCTGTTGCACAGAAGACTCTGATGATGCCATGAGTAAGGTACAGATGCGACTGAGATATTTCATCTGCTAGAGGTTATTTTTAGCAGTTATATTTCAGGTCGTATATAGAGTTTTGAAGAGTCTCCTCTGAGTTTCTGGTCTCTAGTGTTGCCCAATATTTTTGAAAATCATGGCTTCCATGTAAACATTGTAGAGGTAAGAGATTCATATTAAGATGGTTTTGATAAGGATGTTTGCACCCAAATAATAGTTCAAAAAAATTGAGGCAAAACTTAAACAGAAGATGAAAACACTTATCTGCCTTCCCCTTGTTCCTCATCTATTTTTTTTCTTTTGGTTTGCTTGTTTATGTCAGGGAAGTTGAAAATTTAAACTTTTTGGGTTTCGATACCTGCCTCAAAGTCCCCTAGGCCCTAGTATATGGGAAATGAATAAAGCGGTAAAATATGAGAAGTGGACCACTCGAGTCTTCTTTTTGTAAGCACCTTGACCAAAAAGGTAGGGGGGGGGGGGTGGAGGGAGAAAATAAGATGCCAAAATATCACTTTGGAGAAGGGTGTCTTTTCTTTTTTTTTTTTTTCCTTTTTTGAATAATCGAGAATCCGCTCGGGCCAATGGAGCATAATTTGGAACTCGCTGGATAATAGCTTACTCTACCTTTCTCCACTTAAATACCATGTTTTTGTCTGTAGCAGCGTACGAACCATGACATTTGTCTAACCCACACATTACGTGTAGCGTTCTTACCCCTAGATCAAACTAATGGGGGCATTTTTCATTTCTTTTTTTTAATCCATCCTTTTCTCATACTTGGTGGATGGTGGAATTCTTAAAGATTCTACTGTTGCACCAAGTACATGACATGCTATCTCATAACAGTCAACTAATGGCTAGAGTAAATCATGAACTTCCTGAAAGGCCAGACTAATGGCTAGAGTAAATCATGAACTTCCTGAAATGCCAGACTAACATATGAGCTGTCACATTTTCTCTCAAAAAAATAAATAACATATGAGCTGTTACATCTATGGCAAAGGTGGTACTTCTTTACTGATTGATCAACATGATGGCTTTACTTTGAAATGGTACTTCTTAATTTTAATCTACTCTAATTGTGAATGCAGGTTGTTTATTCTGGAGCAGTTTTGGAAGTCTGCATGAGAAAACTAGTTTTCTATCCCGAAGTCGTTGGGTTCATTGAAGAAGAGAAAGACCAATTCCCTTTTGTAAAAGTTCAATATGCATTTAATTCTCCACCAAAGTTGATCATGTTGGATGATCACGGAGAGCAAAAGGAAACCATTAGGTCATCTTCCTTCATCTCTGTTTCCCTTCTTTCCTTAGTGTTTTGAGTCTGAGCACTACAGATTTGTGTTTCTATAATACCTCTACATTGCATTGAGCATGTTCTGTATTAGTCATCAGGACCGTTATGGCCAGATATATTTTCTAAATCCTCCTCTTTCATGTCTTCCTATTCCATTTTCGGGAAACATGATTATATTCAGCCATACAGGTAGACAGTCATCTAGTTGTCACCAAAAATTAACTTTTGGGTCATGAGTCATGAGTGTGTGGCACATGCTAAAAGATTTCAGAGAACTTAGTGTCCTCGGGAAGCCTGAGTACATGGAGTTGCAATTCACAGCTTTAAGTAAATTTTTCCTGATGAAAATTAGTTTGCACCCTGTGCATTGCATCAAGTAGAATCATTCCTTTTGTACGCATGTTTGATAACAGCCAAATCTTTATTCTGGTTATCTAATGTATTCGATACATTTTACAGAATTGATAACTGGAAACGTGAGCACATATTGCAGTTCTTGAAAGAGAAGGTTAAGCCATCATCCGATATCTAATGTGGCTGGTAATCTAGTCCCGTTTTGATCAAGAGCAGTGTTAAGTGTTCAGCCTGCATCTAGTTTCAGAAAACTCCAGTTCCCCACTTATTGTTTTTAAGAAACTGTGAGATGAGATTAATTGCTACACACAAGTTCAAAAGCTACTTTCATTTACAAAACATGCAACTGGATCCTTGTGCTTTTGACGTATCGTTTGGTTTCGTCAGTCCTGCTCTCTCTCTCTCTCTCTTTTTCTATAACTTTCTTTAATTACTCATTACCAGATTATTGTTAGGAATACCCCAGAGAAGGGAACACATCATATTATGAAGGATAATTACATGAGGAGTTGGAATATCCAGTTAGCTGTGCAAGCCTGCTTCTCTATAATA</genome_strand>
        <mrna_strand>AGAGAGAGAAATGGGTGTGATCCAGGTAGCATTGCTGTGCTTTGTTGTTGGAGTTTTGGGGGCAAAAGCTGAGCAGTTGAGCACGAAAGAGTGTGAAAATCTCGGGTTTACGGGTTTAGCTCTATGCTCCGATTGTAGGACTCTTGCTGAGTATGTCAAAGATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTGTCTGAATGTTTGAGCTGTTGCACAGAAGACTCTGATGATGCCATGAGTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTATTCTGGAGCAGTTTTGGAAGTCTGCATGAGAAAACTAGTTTTCTATCCCGAAGTCGTTGGGTTCATTGAAGAAGAGAAAGACCAATTCCCTTTTGTAAAAGTTCAATATGCATTTAATTCTCCACCAAAGTTGATCATGTTGGATGATCACGGAGAGCAAAAGGAAACCATTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGATAACTGGAAACGTGAGCACATATTGCAGTTCTTGAAAGAGAAGGTTAAGCCATCATCCGATATCTAATGTGGCTGGTAATCTAGTCCCGTTTTGATCAAGAGCAGTGTTAAGTGTTCAGCCTGCATCTAGTTTCAGAAAACTCCAGTTCCCCACTTATTGTTTTTAAGAAACTGTGAGATGAGATTAATTGCTACACACAAGTTCAAAAGCTACTTTCATTTACAAAACATGCAACTGGATCCTTGTGCTTTTGACGTATCGTTTGGTTTCGTCAGTCCTGCTCTCTCTCTCTCTCTCTTTTTCTATAACTTTCTTTAATTACTCATTACCAGATTATTGTTAGGAATACCCCAGAGAAAGGAACACATCATATTATGAAGGATAATTACATGAGGAGTTGGAATATCCAGTTAGCTGTGCAAGCCTGCTTCTCTATAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203137" ref_strand="+" ref_description="SGN-E203137 [cLEB-3-B8]">
      <seq>gcacgagatccaggtagcattgctgtgctttgttgttggagttttgggggcaaaagctgagcagttgagcacgaaagagtgtgaaaatctcgggtttacgggtttagctctatgctccgattgtaggactcttgctgagtatgtcaaagatcaagagttggtgtctgaatgtttgagctgttgcacagaagactctgatgatgccatgagtaaggttgtttattctggagcagttttggaagtctgcatgataaaactagttttctatcccgaagtctttgggttcattgaagaagagaaagaccaattcccttttgtaaaagttcaacttgcatttaaattctccaccaaagttgatcatgttggatgatcacggagagcaaaaggaaaccattagaattgataactggaaacgtgagcacatattgcagttcttgaaagagaaggttaagccatcatccgatatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80839" stop="87208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81135" g_stop="81289" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81290" i_stop="85028" i_length="3739">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85029" g_stop="85087" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="214" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85088" i_stop="86174" i_length="1087">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86175" g_stop="86356" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="397" r_length="183" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86357" i_stop="86836" i_length="480">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86837" g_stop="86908" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="469" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E203137" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81135" e_stop="81289"/>
          <exon e_start="85029" e_stop="85087"/>
          <exon e_start="86175" e_stop="86356"/>
          <exon e_start="86837" e_stop="86908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGTGATCCAGGTAGCATTGCTGTGCTTTGTTGTTGGAGTTTTGGGGGCAAAAGCTGAGCAGTTGAGCACGAAAGAGTGTGAAAATCTCGGGTTTACGGGTTTAGCTCTATGCTCCGATTGTAGGACTCTTGCTGAGTATGTCAAAGATCAAGGTTCTTTCTAAAACTCTCCATCTTTTGTTGTCTCTCTATATATGTAAATTAAATGCAGATAATTTCTGGGTTTTTGTTAAATTTAGTGTATGAGTAGTGGGGTAAAAGGTTTGTGGGATTGAGGGAATTTATTGACCTTGACATTGTTTTCAAGGAGACTGAAGATGAGTTTTGATCTTTTATAAGTTTTGGATATGAGATGGCCTCAGGTGTAGTTTTTATAAGGTTAGAGCAAATGGGTTCAGAAGGGGATGATTAAAAGAGCTATATCCAGGGCTGATTAGCTTCCTGAATGAGTTGGAGAAAAAACCTTGAAGACTGCAGTTTAATTGAAAGAGAACAGGGAACTGGAGGAATTGGATATAAGGGCTTAGATTAAAAAAATCAAGTGATATTGTTTATCTTATATGTGGAGAACCTTGTAATGGAAGAAATTCGGTAAAGAACCATAAACAAGATCAGAATTCTTTTTTTTAAGAGTTACAGAATCCTACACTAGGTAATAGCATAAGTGGGAGATCTCTCTCCCTCTTCGTGCATGCCAAACAACTTTTACATACTAATCTCTTAGAAAATATGACAATATTGACAATGAACCTAAGGAGAACATAAGCAACTTATCAAATAAACCTGTGCCATGGTGAGCCACTGCTTTGAAAGCAATTTCGGCTTAACTAGGGTGGTAATCGTGTGAGACTGGTCACTGGTCACTCCTAAAGTCATGGCTAGAAGTTTGGAGTTTGCAGAAATACAATTGAGAGTAACAAGATTGAGAAGAACAACTTTGAGGGAATGAGAGGGTTCTTTCGTAATTGATAATTCACAAGATTGGTTTAGCTTTGGAAAGACTATAACCCTTTTCTTCTTTTTTTGTAAATATGGTTTTTGAATACTACCTATGTACTGACCGAAATAAAAATGTTACTAGTGTCAAAAAAAAAAAAGGGCTACTTCTATAGGCTAAGTTGTTGAGTTATTATAGAAACAAAAAATTATTCAAAGAGTTGGGTTACAAAATTTGTTTTGGTGCAATTACATAGTGCAAGAAAATGATAAGAAAAAAAAGTCAGGCTAAAAGGGTGAGCCATTCCACAACGCGCACGCATCAAGACCATGAGTCGAGCTAGGCGACATATTTTGTAATTACCTATTTAAGGTGATGTCCTTGGTAAGTTGAAATTGTGTCATGTTGTGTACTTTTCCCTAATCACGTCTCATCAATACTTCTTTGGTCTACTCTACATCTCATGAAACCACGCATGGCCAACCTCTCGCCATCCGTGCATCTCGCCACATGCCCGAATCATCTCAGTCTTGCTTTCCTCCTCTTGTCCTCCACCAAAGTCACTCCCACCTAGTACCGGATATCCTCATTTGTAATCTTACCTCATTATGCCCACACATCTATCACATCATCCTCATATCTGACACTATCTTTCTGAATGTGAGAGTTCTTGACTAGAACACTTTGCTGTATACTACAAAGCTGGTTTAACTACCACATTGTAGAATTTGTCTTTTAAGTGTTTGTGCACTTTCTTATTACACATGACTCCAAATGTGAGCCTCCATTTCAGCAACCCTGCACCAATATGGTGAGTGACGTCATCGTCAATCTCCCAGTTACCTTGGATAATAGATCCAAGATACTTGAAACTTCCTCTCTTTTGCTTGACCATTGTATCGTGAGCCCTTTAGAAAGACTACCCAAGTCTTCCGTAAAAGGCAACCAAACCTTTATGATCATGTAGGTGATTCCATCGAGTCTATCTCAACACATGCATTAAGTGCAAAATGAGCTCAATCTTACAAAGTACCAAGAGACTTCAGAGGGATAGGAAATGTAGTGCATATCGAAGGCTCGTATAACTTCATTTGATCACAGATTGTTACCTTTGCCTTAGTGGGGAAATGTTGGTTTTATTCAAAATTTGTTGGTAATGCGAAGCCATAGAATTGTTTGTCGCTCCCTTTTGCACTGCTCTGTCTTGTGTAGTAGACAAAAGTTCCGTTTAGAAAGATTAAATTTATTGTGAGCACTTTATACACAAACTTTTCTTATGGGATTAGTTGAGTTCCCTCCATGCTTGTTGAGGCGAAACTTGACAACCACACACGTATCGCTGCCCTCTCCATTCGTCCGACTCAGCTCGTGAGGCGTGCGCGATGCAACTGCTGCAAAATGAATTTTGTAACTGCTACTTGAATAAGTCCGATAACAACAGAGTTTATTTTCTATAACAGCTACAAATTAATTCGTGTAAAGTTGTAGTTGTTTCTTTCATAACAACTCTAGCAGATGGCCTAGAAAAGCGGATCTGTATGAATTATCAAATACAGAAAAAAGTCATTCTCATTTCCTCAAAGTCGTTGGGCAATCGTATTTATGCGAACTCCAAACTTTCAACCACGAGTGCTCGTTTTGGGATTGCGCCTGTAACTTGGGGATCAACCAGTCTCAAACAATTTACATCATGGTTTAGGCCGAAATCACTTTCATGGGAGTGGCTCTCTATGACACAATGTTTTATTCAATAAGTTGCCTCTGTTACTGTCAATAGTTTCCAAATCATGCTTACTCGGCTTTTCTGCTGGGCACCAGTAATGGTATTTGATATTTGCTGTAACTCATCCAAGAAGAGATTTTTCCTACATACATGGATAATTAAGATTTGTTGTTTTTGCTCTAGGCAACCAAATGTTTGATACTTGCTTTTAATCACAGCTGTGTTTGGATTTGTTTAACTAGTTCTAGTCTGGGAAAGAAACAATAATGGACCAATATCAGGAGTCAATCTAAAGCCCGAATTAATGATGTACTGCTACATAAAAACTATCATTATGGGGCAAACAAACCTGCAATGATTTATCTATGCTATAAATATCAAATAGCTTAAGGATCACTACACCATGTACCCAGTTGGTGGGATTTCGATAAGTTTGAAAATTTCAAGGAAAAGATCATACAAGTACTAAATTGACATTGAAAAGCTTTGTGGAACATTGGTAAAAACGATCTGGAAGGTAGTGGAAATACCAGCTTACTCGCTTATCTTTAGTGTTGCAAATTCACAAATATTTTGCTTCAATTATGCAACCCTCTGTAAGTGCATGAATAACTTTTTCATTTTTTTCTTTAATGTATGCATTTCACATTTGCTACCTCTGTATCTTTGCCCTCATCCTTGCACTGCAAAAAAGTTTTCTTAATTTCTATGCAAATACTGGGACCTCTAAAAAAATTGGGATGTATTGTTTGCTGAACTTAAGTCTTAATGTGAAAGGATTATATGGATATCTAAAAGCCGTGTATCGTGCTGTCTGATTGTGATTAGAAATGTTTGAACTTATTTAACCTTTCACCATGTCCTGTAAATTGAATACTGAATTTGACTAATCATTATGATTTATTGAGAAAAAGGACTATGCATAGTTAGAGAGAGCAATTTCATCAAATGAAAAGAGGAAAAAAACTAGAACCATGGCGCTAATTTAGAAAACTTGACCAAATAAAGTATATTAATAGAAGTCATGCTCCATATTTGGATGCAGGAGCTATTGCTGTTTTATTGGTTCTTTCCTCTTTTTTTTGTGGATTGTTAGGAGTTTATAATGACCTAATGGACTGCTCTTCTCTCCATGTCCTTGTGTAATTATTTTTTCCTAATTTGATTTCAAATGCATGTTGACAAGTATAATTATTTCTTGCTAAACAGTATTGATTACCTGTTTCCTACAGAGTTGGTGTCTGAATGTTTGAGCTGTTGCACAGAAGACTCTGATGATGCCATGAGTAAGGTACAGATGCGACTGAGATATTTCATCTGCTAGAGGTTATTTTTAGCAGTTATATTTCAGGTCGTATATAGAGTTTTGAAGAGTCTCCTCTGAGTTTCTGGTCTCTAGTGTTGCCCAATATTTTTGAAAATCATGGCTTCCATGTAAACATTGTAGAGGTAAGAGATTCATATTAAGATGGTTTTGATAAGGATGTTTGCACCCAAATAATAGTTCAAAAAAATTGAGGCAAAACTTAAACAGAAGATGAAAACACTTATCTGCCTTCCCCTTGTTCCTCATCTATTTTTTTTCTTTTGGTTTGCTTGTTTATGTCAGGGAAGTTGAAAATTTAAACTTTTTGGGTTTCGATACCTGCCTCAAAGTCCCCTAGGCCCTAGTATATGGGAAATGAATAAAGCGGTAAAATATGAGAAGTGGACCACTCGAGTCTTCTTTTTGTAAGCACCTTGACCAAAAAGGTAGGGGGGGGGGGGTGGAGGGAGAAAATAAGATGCCAAAATATCACTTTGGAGAAGGGTGTCTTTTCTTTTTTTTTTTTTTCCTTTTTTGAATAATCGAGAATCCGCTCGGGCCAATGGAGCATAATTTGGAACTCGCTGGATAATAGCTTACTCTACCTTTCTCCACTTAAATACCATGTTTTTGTCTGTAGCAGCGTACGAACCATGACATTTGTCTAACCCACACATTACGTGTAGCGTTCTTACCCCTAGATCAAACTAATGGGGGCATTTTTCATTTCTTTTTTTTAATCCATCCTTTTCTCATACTTGGTGGATGGTGGAATTCTTAAAGATTCTACTGTTGCACCAAGTACATGACATGCTATCTCATAACAGTCAACTAATGGCTAGAGTAAATCATGAACTTCCTGAAAGGCCAGACTAATGGCTAGAGTAAATCATGAACTTCCTGAAATGCCAGACTAACATATGAGCTGTCACATTTTCTCTCAAAAAAATAAATAACATATGAGCTGTTACATCTATGGCAAAGGTGGTACTTCTTTACTGATTGATCAACATGATGGCTTTACTTTGAAATGGTACTTCTTAATTTTAATCTACTCTAATTGTGAATGCAGGTTGTTTATTCTGGAGCAGTTTTGGAAGTCTGCATGAGAAAACTAGTTTTCTATCCCGAAGTCGTTGGGTTCATTGAAGAAGAGAAAGACCAATTCCCTTTTGTAAAAGTTCAATATGCATTT-AATTCTCCACCAAAGTTGATCATGTTGGATGATCACGGAGAGCAAAAGGAAACCATTAGGTCATCTTCCTTCATCTCTGTTTCCCTTCTTTCCTTAGTGTTTTGAGTCTGAGCACTACAGATTTGTGTTTCTATAATACCTCTACATTGCATTGAGCATGTTCTGTATTAGTCATCAGGACCGTTATGGCCAGATATATTTTCTAAATCCTCCTCTTTCATGTCTTCCTATTCCATTTTCGGGAAACATGATTATATTCAGCCATACAGGTAGACAGTCATCTAGTTGTCACCAAAAATTAACTTTTGGGTCATGAGTCATGAGTGTGTGGCACATGCTAAAAGATTTCAGAGAACTTAGTGTCCTCGGGAAGCCTGAGTACATGGAGTTGCAATTCACAGCTTTAAGTAAATTTTTCCTGATGAAAATTAGTTTGCACCCTGTGCATTGCATCAAGTAGAATCATTCCTTTTGTACGCATGTTTGATAACAGCCAAATCTTTATTCTGGTTATCTAATGTATTCGATACATTTTACAGAATTGATAACTGGAAACGTGAGCACATATTGCAGTTCTTGAAAGAGAAGGTTAAGCCATCATCCGATATCTA</genome_strand>
        <mrna_strand>GCACGAGATCCAGGTAGCATTGCTGTGCTTTGTTGTTGGAGTTTTGGGGGCAAAAGCTGAGCAGTTGAGCACGAAAGAGTGTGAAAATCTCGGGTTTACGGGTTTAGCTCTATGCTCCGATTGTAGGACTCTTGCTGAGTATGTCAAAGATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTGTCTGAATGTTTGAGCTGTTGCACAGAAGACTCTGATGATGCCATGAGTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTATTCTGGAGCAGTTTTGGAAGTCTGCATGATAAAACTAGTTTTCTATCCCGAAGTCTTTGGGTTCATTGAAGAAGAGAAAGACCAATTCCCTTTTGTAAAAGTTCAACTTGCATTTAAATTCTCCACCAAAGTTGATCATGTTGGATGATCACGGAGAGCAAAAGGAAACCATTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGATAACTGGAAACGTGAGCACATATTGCAGTTCTTGAAAGAGAAGGTTAAGCCATCATCCGATATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277244" ref_strand="-" ref_description="SGN-E277244 [cLEL-3-E4](-)">
      <seq>gcacgagatccaggtagcattgctgtgctttgttgttggagttttgggggcaaaagctgagcagttgagcacgaaagagtgtcaaaatctcgggtttacgggtttagctctatgctccgattgtaggactcttgctgagtatgtcaaagatcaagagttggtgtctgaatgtttgagctgttgcacagaagactctgatgatgccatgagtaaggttgtttattctggagcagttttggaagtctgcatgagaaaactagttttctatcccgaagtcgttgggttcattgaagaagagaaagaccaattcccttttgtaaaagttcaatatgcatttaattctccaccaaaggtgatcatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80839" stop="86624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81135" g_stop="81289" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81290" i_stop="85028" i_length="3739">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85029" g_stop="85087" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="214" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85088" i_stop="86174" i_length="1087">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86175" g_stop="86324" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="364" r_length="150" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E277244" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277244" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81135" e_stop="81289"/>
          <exon e_start="85029" e_stop="85087"/>
          <exon e_start="86175" e_stop="86324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGTGATCCAGGTAGCATTGCTGTGCTTTGTTGTTGGAGTTTTGGGGGCAAAAGCTGAGCAGTTGAGCACGAAAGAGTGTGAAAATCTCGGGTTTACGGGTTTAGCTCTATGCTCCGATTGTAGGACTCTTGCTGAGTATGTCAAAGATCAAGGTTCTTTCTAAAACTCTCCATCTTTTGTTGTCTCTCTATATATGTAAATTAAATGCAGATAATTTCTGGGTTTTTGTTAAATTTAGTGTATGAGTAGTGGGGTAAAAGGTTTGTGGGATTGAGGGAATTTATTGACCTTGACATTGTTTTCAAGGAGACTGAAGATGAGTTTTGATCTTTTATAAGTTTTGGATATGAGATGGCCTCAGGTGTAGTTTTTATAAGGTTAGAGCAAATGGGTTCAGAAGGGGATGATTAAAAGAGCTATATCCAGGGCTGATTAGCTTCCTGAATGAGTTGGAGAAAAAACCTTGAAGACTGCAGTTTAATTGAAAGAGAACAGGGAACTGGAGGAATTGGATATAAGGGCTTAGATTAAAAAAATCAAGTGATATTGTTTATCTTATATGTGGAGAACCTTGTAATGGAAGAAATTCGGTAAAGAACCATAAACAAGATCAGAATTCTTTTTTTTAAGAGTTACAGAATCCTACACTAGGTAATAGCATAAGTGGGAGATCTCTCTCCCTCTTCGTGCATGCCAAACAACTTTTACATACTAATCTCTTAGAAAATATGACAATATTGACAATGAACCTAAGGAGAACATAAGCAACTTATCAAATAAACCTGTGCCATGGTGAGCCACTGCTTTGAAAGCAATTTCGGCTTAACTAGGGTGGTAATCGTGTGAGACTGGTCACTGGTCACTCCTAAAGTCATGGCTAGAAGTTTGGAGTTTGCAGAAATACAATTGAGAGTAACAAGATTGAGAAGAACAACTTTGAGGGAATGAGAGGGTTCTTTCGTAATTGATAATTCACAAGATTGGTTTAGCTTTGGAAAGACTATAACCCTTTTCTTCTTTTTTTGTAAATATGGTTTTTGAATACTACCTATGTACTGACCGAAATAAAAATGTTACTAGTGTCAAAAAAAAAAAAGGGCTACTTCTATAGGCTAAGTTGTTGAGTTATTATAGAAACAAAAAATTATTCAAAGAGTTGGGTTACAAAATTTGTTTTGGTGCAATTACATAGTGCAAGAAAATGATAAGAAAAAAAAGTCAGGCTAAAAGGGTGAGCCATTCCACAACGCGCACGCATCAAGACCATGAGTCGAGCTAGGCGACATATTTTGTAATTACCTATTTAAGGTGATGTCCTTGGTAAGTTGAAATTGTGTCATGTTGTGTACTTTTCCCTAATCACGTCTCATCAATACTTCTTTGGTCTACTCTACATCTCATGAAACCACGCATGGCCAACCTCTCGCCATCCGTGCATCTCGCCACATGCCCGAATCATCTCAGTCTTGCTTTCCTCCTCTTGTCCTCCACCAAAGTCACTCCCACCTAGTACCGGATATCCTCATTTGTAATCTTACCTCATTATGCCCACACATCTATCACATCATCCTCATATCTGACACTATCTTTCTGAATGTGAGAGTTCTTGACTAGAACACTTTGCTGTATACTACAAAGCTGGTTTAACTACCACATTGTAGAATTTGTCTTTTAAGTGTTTGTGCACTTTCTTATTACACATGACTCCAAATGTGAGCCTCCATTTCAGCAACCCTGCACCAATATGGTGAGTGACGTCATCGTCAATCTCCCAGTTACCTTGGATAATAGATCCAAGATACTTGAAACTTCCTCTCTTTTGCTTGACCATTGTATCGTGAGCCCTTTAGAAAGACTACCCAAGTCTTCCGTAAAAGGCAACCAAACCTTTATGATCATGTAGGTGATTCCATCGAGTCTATCTCAACACATGCATTAAGTGCAAAATGAGCTCAATCTTACAAAGTACCAAGAGACTTCAGAGGGATAGGAAATGTAGTGCATATCGAAGGCTCGTATAACTTCATTTGATCACAGATTGTTACCTTTGCCTTAGTGGGGAAATGTTGGTTTTATTCAAAATTTGTTGGTAATGCGAAGCCATAGAATTGTTTGTCGCTCCCTTTTGCACTGCTCTGTCTTGTGTAGTAGACAAAAGTTCCGTTTAGAAAGATTAAATTTATTGTGAGCACTTTATACACAAACTTTTCTTATGGGATTAGTTGAGTTCCCTCCATGCTTGTTGAGGCGAAACTTGACAACCACACACGTATCGCTGCCCTCTCCATTCGTCCGACTCAGCTCGTGAGGCGTGCGCGATGCAACTGCTGCAAAATGAATTTTGTAACTGCTACTTGAATAAGTCCGATAACAACAGAGTTTATTTTCTATAACAGCTACAAATTAATTCGTGTAAAGTTGTAGTTGTTTCTTTCATAACAACTCTAGCAGATGGCCTAGAAAAGCGGATCTGTATGAATTATCAAATACAGAAAAAAGTCATTCTCATTTCCTCAAAGTCGTTGGGCAATCGTATTTATGCGAACTCCAAACTTTCAACCACGAGTGCTCGTTTTGGGATTGCGCCTGTAACTTGGGGATCAACCAGTCTCAAACAATTTACATCATGGTTTAGGCCGAAATCACTTTCATGGGAGTGGCTCTCTATGACACAATGTTTTATTCAATAAGTTGCCTCTGTTACTGTCAATAGTTTCCAAATCATGCTTACTCGGCTTTTCTGCTGGGCACCAGTAATGGTATTTGATATTTGCTGTAACTCATCCAAGAAGAGATTTTTCCTACATACATGGATAATTAAGATTTGTTGTTTTTGCTCTAGGCAACCAAATGTTTGATACTTGCTTTTAATCACAGCTGTGTTTGGATTTGTTTAACTAGTTCTAGTCTGGGAAAGAAACAATAATGGACCAATATCAGGAGTCAATCTAAAGCCCGAATTAATGATGTACTGCTACATAAAAACTATCATTATGGGGCAAACAAACCTGCAATGATTTATCTATGCTATAAATATCAAATAGCTTAAGGATCACTACACCATGTACCCAGTTGGTGGGATTTCGATAAGTTTGAAAATTTCAAGGAAAAGATCATACAAGTACTAAATTGACATTGAAAAGCTTTGTGGAACATTGGTAAAAACGATCTGGAAGGTAGTGGAAATACCAGCTTACTCGCTTATCTTTAGTGTTGCAAATTCACAAATATTTTGCTTCAATTATGCAACCCTCTGTAAGTGCATGAATAACTTTTTCATTTTTTTCTTTAATGTATGCATTTCACATTTGCTACCTCTGTATCTTTGCCCTCATCCTTGCACTGCAAAAAAGTTTTCTTAATTTCTATGCAAATACTGGGACCTCTAAAAAAATTGGGATGTATTGTTTGCTGAACTTAAGTCTTAATGTGAAAGGATTATATGGATATCTAAAAGCCGTGTATCGTGCTGTCTGATTGTGATTAGAAATGTTTGAACTTATTTAACCTTTCACCATGTCCTGTAAATTGAATACTGAATTTGACTAATCATTATGATTTATTGAGAAAAAGGACTATGCATAGTTAGAGAGAGCAATTTCATCAAATGAAAAGAGGAAAAAAACTAGAACCATGGCGCTAATTTAGAAAACTTGACCAAATAAAGTATATTAATAGAAGTCATGCTCCATATTTGGATGCAGGAGCTATTGCTGTTTTATTGGTTCTTTCCTCTTTTTTTTGTGGATTGTTAGGAGTTTATAATGACCTAATGGACTGCTCTTCTCTCCATGTCCTTGTGTAATTATTTTTTCCTAATTTGATTTCAAATGCATGTTGACAAGTATAATTATTTCTTGCTAAACAGTATTGATTACCTGTTTCCTACAGAGTTGGTGTCTGAATGTTTGAGCTGTTGCACAGAAGACTCTGATGATGCCATGAGTAAGGTACAGATGCGACTGAGATATTTCATCTGCTAGAGGTTATTTTTAGCAGTTATATTTCAGGTCGTATATAGAGTTTTGAAGAGTCTCCTCTGAGTTTCTGGTCTCTAGTGTTGCCCAATATTTTTGAAAATCATGGCTTCCATGTAAACATTGTAGAGGTAAGAGATTCATATTAAGATGGTTTTGATAAGGATGTTTGCACCCAAATAATAGTTCAAAAAAATTGAGGCAAAACTTAAACAGAAGATGAAAACACTTATCTGCCTTCCCCTTGTTCCTCATCTATTTTTTTTCTTTTGGTTTGCTTGTTTATGTCAGGGAAGTTGAAAATTTAAACTTTTTGGGTTTCGATACCTGCCTCAAAGTCCCCTAGGCCCTAGTATATGGGAAATGAATAAAGCGGTAAAATATGAGAAGTGGACCACTCGAGTCTTCTTTTTGTAAGCACCTTGACCAAAAAGGTAGGGGGGGGGGGGTGGAGGGAGAAAATAAGATGCCAAAATATCACTTTGGAGAAGGGTGTCTTTTCTTTTTTTTTTTTTTCCTTTTTTGAATAATCGAGAATCCGCTCGGGCCAATGGAGCATAATTTGGAACTCGCTGGATAATAGCTTACTCTACCTTTCTCCACTTAAATACCATGTTTTTGTCTGTAGCAGCGTACGAACCATGACATTTGTCTAACCCACACATTACGTGTAGCGTTCTTACCCCTAGATCAAACTAATGGGGGCATTTTTCATTTCTTTTTTTTAATCCATCCTTTTCTCATACTTGGTGGATGGTGGAATTCTTAAAGATTCTACTGTTGCACCAAGTACATGACATGCTATCTCATAACAGTCAACTAATGGCTAGAGTAAATCATGAACTTCCTGAAAGGCCAGACTAATGGCTAGAGTAAATCATGAACTTCCTGAAATGCCAGACTAACATATGAGCTGTCACATTTTCTCTCAAAAAAATAAATAACATATGAGCTGTTACATCTATGGCAAAGGTGGTACTTCTTTACTGATTGATCAACATGATGGCTTTACTTTGAAATGGTACTTCTTAATTTTAATCTACTCTAATTGTGAATGCAGGTTGTTTATTCTGGAGCAGTTTTGGAAGTCTGCATGAGAAAACTAGTTTTCTATCCCGAAGTCGTTGGGTTCATTGAAGAAGAGAAAGACCAATTCCCTTTTGTAAAAGTTCAATATGCATTTAATTCTCCACCAAAGTTGATCATGTTG</genome_strand>
        <mrna_strand>GCACGAGATCCAGGTAGCATTGCTGTGCTTTGTTGTTGGAGTTTTGGGGGCAAAAGCTGAGCAGTTGAGCACGAAAGAGTGTCAAAATCTCGGGTTTACGGGTTTAGCTCTATGCTCCGATTGTAGGACTCTTGCTGAGTATGTCAAAGATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTGTCTGAATGTTTGAGCTGTTGCACAGAAGACTCTGATGATGCCATGAGTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTATTCTGGAGCAGTTTTGGAAGTCTGCATGAGAAAACTAGTTTTCTATCCCGAAGTCGTTGGGTTCATTGAAGAAGAGAAAGACCAATTCCCTTTTGTAAAAGTTCAATATGCATTTAATTCTCCACCAAAGGTGATCATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712772" ref_strand="+" ref_description="SGN-E712772 [FB05DB05]">
      <seq>gtgtgatccaggtagcattgctgtgctttgttgttggagttttgggggcaaaagctgagcagttgagcacgaaagagtgtgaaaatctcgggtttacgggtttagctctatgctccgattgtaggactcttgctgagtatgtcaaagatcaagagttggtgtctgaatgtttgagctgttgcacagaagactctgatgatgccatgagtaaggttgtttattctggagcagttttggaagtctgcatgagaaaactagttttctatcccgaagtcgttgggttcattgaagaagagaaagaccaattcccttttgtaaaagttcaatatgcatttaattctccaccaaagttgatcatgttggatgatcacggagagcaaaaggaaaccattagaattgataactggaaacgtgagcacatattgcagttcttgaaagagaaggttaagccatcatccgatatctaatgtggctggtaatctagtcccgttttgatcaagagcagtgttaagtgttcagcctgcatctagtttcagaaaactccagttccccacttattgtttttaagaaactgtgagatgagattaattgctacacacaagttcaaaagctactttcatttacaaaacatgcaactggatccttgtgcttttgacgtatcgtttggtttcgtcagtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80837" stop="87419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81137" g_stop="81289" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81290" i_stop="85028" i_length="3739">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85029" g_stop="85087" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="212" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85088" i_stop="86174" i_length="1087">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86175" g_stop="86356" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="394" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86357" i_stop="86836" i_length="480">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86837" g_stop="87117" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="675" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="678" polyA_stop="690"/>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E712772" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81137" e_stop="81289"/>
          <exon e_start="85029" e_stop="85087"/>
          <exon e_start="86175" e_stop="86356"/>
          <exon e_start="86837" e_stop="87117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGATCCAGGTAGCATTGCTGTGCTTTGTTGTTGGAGTTTTGGGGGCAAAAGCTGAGCAGTTGAGCACGAAAGAGTGTGAAAATCTCGGGTTTACGGGTTTAGCTCTATGCTCCGATTGTAGGACTCTTGCTGAGTATGTCAAAGATCAAGGTTCTTTCTAAAACTCTCCATCTTTTGTTGTCTCTCTATATATGTAAATTAAATGCAGATAATTTCTGGGTTTTTGTTAAATTTAGTGTATGAGTAGTGGGGTAAAAGGTTTGTGGGATTGAGGGAATTTATTGACCTTGACATTGTTTTCAAGGAGACTGAAGATGAGTTTTGATCTTTTATAAGTTTTGGATATGAGATGGCCTCAGGTGTAGTTTTTATAAGGTTAGAGCAAATGGGTTCAGAAGGGGATGATTAAAAGAGCTATATCCAGGGCTGATTAGCTTCCTGAATGAGTTGGAGAAAAAACCTTGAAGACTGCAGTTTAATTGAAAGAGAACAGGGAACTGGAGGAATTGGATATAAGGGCTTAGATTAAAAAAATCAAGTGATATTGTTTATCTTATATGTGGAGAACCTTGTAATGGAAGAAATTCGGTAAAGAACCATAAACAAGATCAGAATTCTTTTTTTTAAGAGTTACAGAATCCTACACTAGGTAATAGCATAAGTGGGAGATCTCTCTCCCTCTTCGTGCATGCCAAACAACTTTTACATACTAATCTCTTAGAAAATATGACAATATTGACAATGAACCTAAGGAGAACATAAGCAACTTATCAAATAAACCTGTGCCATGGTGAGCCACTGCTTTGAAAGCAATTTCGGCTTAACTAGGGTGGTAATCGTGTGAGACTGGTCACTGGTCACTCCTAAAGTCATGGCTAGAAGTTTGGAGTTTGCAGAAATACAATTGAGAGTAACAAGATTGAGAAGAACAACTTTGAGGGAATGAGAGGGTTCTTTCGTAATTGATAATTCACAAGATTGGTTTAGCTTTGGAAAGACTATAACCCTTTTCTTCTTTTTTTGTAAATATGGTTTTTGAATACTACCTATGTACTGACCGAAATAAAAATGTTACTAGTGTCAAAAAAAAAAAAGGGCTACTTCTATAGGCTAAGTTGTTGAGTTATTATAGAAACAAAAAATTATTCAAAGAGTTGGGTTACAAAATTTGTTTTGGTGCAATTACATAGTGCAAGAAAATGATAAGAAAAAAAAGTCAGGCTAAAAGGGTGAGCCATTCCACAACGCGCACGCATCAAGACCATGAGTCGAGCTAGGCGACATATTTTGTAATTACCTATTTAAGGTGATGTCCTTGGTAAGTTGAAATTGTGTCATGTTGTGTACTTTTCCCTAATCACGTCTCATCAATACTTCTTTGGTCTACTCTACATCTCATGAAACCACGCATGGCCAACCTCTCGCCATCCGTGCATCTCGCCACATGCCCGAATCATCTCAGTCTTGCTTTCCTCCTCTTGTCCTCCACCAAAGTCACTCCCACCTAGTACCGGATATCCTCATTTGTAATCTTACCTCATTATGCCCACACATCTATCACATCATCCTCATATCTGACACTATCTTTCTGAATGTGAGAGTTCTTGACTAGAACACTTTGCTGTATACTACAAAGCTGGTTTAACTACCACATTGTAGAATTTGTCTTTTAAGTGTTTGTGCACTTTCTTATTACACATGACTCCAAATGTGAGCCTCCATTTCAGCAACCCTGCACCAATATGGTGAGTGACGTCATCGTCAATCTCCCAGTTACCTTGGATAATAGATCCAAGATACTTGAAACTTCCTCTCTTTTGCTTGACCATTGTATCGTGAGCCCTTTAGAAAGACTACCCAAGTCTTCCGTAAAAGGCAACCAAACCTTTATGATCATGTAGGTGATTCCATCGAGTCTATCTCAACACATGCATTAAGTGCAAAATGAGCTCAATCTTACAAAGTACCAAGAGACTTCAGAGGGATAGGAAATGTAGTGCATATCGAAGGCTCGTATAACTTCATTTGATCACAGATTGTTACCTTTGCCTTAGTGGGGAAATGTTGGTTTTATTCAAAATTTGTTGGTAATGCGAAGCCATAGAATTGTTTGTCGCTCCCTTTTGCACTGCTCTGTCTTGTGTAGTAGACAAAAGTTCCGTTTAGAAAGATTAAATTTATTGTGAGCACTTTATACACAAACTTTTCTTATGGGATTAGTTGAGTTCCCTCCATGCTTGTTGAGGCGAAACTTGACAACCACACACGTATCGCTGCCCTCTCCATTCGTCCGACTCAGCTCGTGAGGCGTGCGCGATGCAACTGCTGCAAAATGAATTTTGTAACTGCTACTTGAATAAGTCCGATAACAACAGAGTTTATTTTCTATAACAGCTACAAATTAATTCGTGTAAAGTTGTAGTTGTTTCTTTCATAACAACTCTAGCAGATGGCCTAGAAAAGCGGATCTGTATGAATTATCAAATACAGAAAAAAGTCATTCTCATTTCCTCAAAGTCGTTGGGCAATCGTATTTATGCGAACTCCAAACTTTCAACCACGAGTGCTCGTTTTGGGATTGCGCCTGTAACTTGGGGATCAACCAGTCTCAAACAATTTACATCATGGTTTAGGCCGAAATCACTTTCATGGGAGTGGCTCTCTATGACACAATGTTTTATTCAATAAGTTGCCTCTGTTACTGTCAATAGTTTCCAAATCATGCTTACTCGGCTTTTCTGCTGGGCACCAGTAATGGTATTTGATATTTGCTGTAACTCATCCAAGAAGAGATTTTTCCTACATACATGGATAATTAAGATTTGTTGTTTTTGCTCTAGGCAACCAAATGTTTGATACTTGCTTTTAATCACAGCTGTGTTTGGATTTGTTTAACTAGTTCTAGTCTGGGAAAGAAACAATAATGGACCAATATCAGGAGTCAATCTAAAGCCCGAATTAATGATGTACTGCTACATAAAAACTATCATTATGGGGCAAACAAACCTGCAATGATTTATCTATGCTATAAATATCAAATAGCTTAAGGATCACTACACCATGTACCCAGTTGGTGGGATTTCGATAAGTTTGAAAATTTCAAGGAAAAGATCATACAAGTACTAAATTGACATTGAAAAGCTTTGTGGAACATTGGTAAAAACGATCTGGAAGGTAGTGGAAATACCAGCTTACTCGCTTATCTTTAGTGTTGCAAATTCACAAATATTTTGCTTCAATTATGCAACCCTCTGTAAGTGCATGAATAACTTTTTCATTTTTTTCTTTAATGTATGCATTTCACATTTGCTACCTCTGTATCTTTGCCCTCATCCTTGCACTGCAAAAAAGTTTTCTTAATTTCTATGCAAATACTGGGACCTCTAAAAAAATTGGGATGTATTGTTTGCTGAACTTAAGTCTTAATGTGAAAGGATTATATGGATATCTAAAAGCCGTGTATCGTGCTGTCTGATTGTGATTAGAAATGTTTGAACTTATTTAACCTTTCACCATGTCCTGTAAATTGAATACTGAATTTGACTAATCATTATGATTTATTGAGAAAAAGGACTATGCATAGTTAGAGAGAGCAATTTCATCAAATGAAAAGAGGAAAAAAACTAGAACCATGGCGCTAATTTAGAAAACTTGACCAAATAAAGTATATTAATAGAAGTCATGCTCCATATTTGGATGCAGGAGCTATTGCTGTTTTATTGGTTCTTTCCTCTTTTTTTTGTGGATTGTTAGGAGTTTATAATGACCTAATGGACTGCTCTTCTCTCCATGTCCTTGTGTAATTATTTTTTCCTAATTTGATTTCAAATGCATGTTGACAAGTATAATTATTTCTTGCTAAACAGTATTGATTACCTGTTTCCTACAGAGTTGGTGTCTGAATGTTTGAGCTGTTGCACAGAAGACTCTGATGATGCCATGAGTAAGGTACAGATGCGACTGAGATATTTCATCTGCTAGAGGTTATTTTTAGCAGTTATATTTCAGGTCGTATATAGAGTTTTGAAGAGTCTCCTCTGAGTTTCTGGTCTCTAGTGTTGCCCAATATTTTTGAAAATCATGGCTTCCATGTAAACATTGTAGAGGTAAGAGATTCATATTAAGATGGTTTTGATAAGGATGTTTGCACCCAAATAATAGTTCAAAAAAATTGAGGCAAAACTTAAACAGAAGATGAAAACACTTATCTGCCTTCCCCTTGTTCCTCATCTATTTTTTTTCTTTTGGTTTGCTTGTTTATGTCAGGGAAGTTGAAAATTTAAACTTTTTGGGTTTCGATACCTGCCTCAAAGTCCCCTAGGCCCTAGTATATGGGAAATGAATAAAGCGGTAAAATATGAGAAGTGGACCACTCGAGTCTTCTTTTTGTAAGCACCTTGACCAAAAAGGTAGGGGGGGGGGGGTGGAGGGAGAAAATAAGATGCCAAAATATCACTTTGGAGAAGGGTGTCTTTTCTTTTTTTTTTTTTTCCTTTTTTGAATAATCGAGAATCCGCTCGGGCCAATGGAGCATAATTTGGAACTCGCTGGATAATAGCTTACTCTACCTTTCTCCACTTAAATACCATGTTTTTGTCTGTAGCAGCGTACGAACCATGACATTTGTCTAACCCACACATTACGTGTAGCGTTCTTACCCCTAGATCAAACTAATGGGGGCATTTTTCATTTCTTTTTTTTAATCCATCCTTTTCTCATACTTGGTGGATGGTGGAATTCTTAAAGATTCTACTGTTGCACCAAGTACATGACATGCTATCTCATAACAGTCAACTAATGGCTAGAGTAAATCATGAACTTCCTGAAAGGCCAGACTAATGGCTAGAGTAAATCATGAACTTCCTGAAATGCCAGACTAACATATGAGCTGTCACATTTTCTCTCAAAAAAATAAATAACATATGAGCTGTTACATCTATGGCAAAGGTGGTACTTCTTTACTGATTGATCAACATGATGGCTTTACTTTGAAATGGTACTTCTTAATTTTAATCTACTCTAATTGTGAATGCAGGTTGTTTATTCTGGAGCAGTTTTGGAAGTCTGCATGAGAAAACTAGTTTTCTATCCCGAAGTCGTTGGGTTCATTGAAGAAGAGAAAGACCAATTCCCTTTTGTAAAAGTTCAATATGCATTTAATTCTCCACCAAAGTTGATCATGTTGGATGATCACGGAGAGCAAAAGGAAACCATTAGGTCATCTTCCTTCATCTCTGTTTCCCTTCTTTCCTTAGTGTTTTGAGTCTGAGCACTACAGATTTGTGTTTCTATAATACCTCTACATTGCATTGAGCATGTTCTGTATTAGTCATCAGGACCGTTATGGCCAGATATATTTTCTAAATCCTCCTCTTTCATGTCTTCCTATTCCATTTTCGGGAAACATGATTATATTCAGCCATACAGGTAGACAGTCATCTAGTTGTCACCAAAAATTAACTTTTGGGTCATGAGTCATGAGTGTGTGGCACATGCTAAAAGATTTCAGAGAACTTAGTGTCCTCGGGAAGCCTGAGTACATGGAGTTGCAATTCACAGCTTTAAGTAAATTTTTCCTGATGAAAATTAGTTTGCACCCTGTGCATTGCATCAAGTAGAATCATTCCTTTTGTACGCATGTTTGATAACAGCCAAATCTTTATTCTGGTTATCTAATGTATTCGATACATTTTACAGAATTGATAACTGGAAACGTGAGCACATATTGCAGTTCTTGAAAGAGAAGGTTAAGCCATCATCCGATATCTAATGTGGCTGGTAATCTAGTCCCGTTTTGATCAAGAGCAGTGTTAAGTGTTCAGCCTGCATCTAGTTTCAGAAAACTCCAGTTCCCCACTTATTGTTTTTAAGAAACTGTGAGATGAGATTAATTGCTACACACAAGTTCAAAAGCTACTTTCATTTACAAAACATGCAACTGGATCCTTGTGCTTTTGACGTATCGTTTGGTTTCGTCA</genome_strand>
        <mrna_strand>GTGTGATCCAGGTAGCATTGCTGTGCTTTGTTGTTGGAGTTTTGGGGGCAAAAGCTGAGCAGTTGAGCACGAAAGAGTGTGAAAATCTCGGGTTTACGGGTTTAGCTCTATGCTCCGATTGTAGGACTCTTGCTGAGTATGTCAAAGATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTGTCTGAATGTTTGAGCTGTTGCACAGAAGACTCTGATGATGCCATGAGTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTATTCTGGAGCAGTTTTGGAAGTCTGCATGAGAAAACTAGTTTTCTATCCCGAAGTCGTTGGGTTCATTGAAGAAGAGAAAGACCAATTCCCTTTTGTAAAAGTTCAATATGCATTTAATTCTCCACCAAAGTTGATCATGTTGGATGATCACGGAGAGCAAAAGGAAACCATTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGATAACTGGAAACGTGAGCACATATTGCAGTTCTTGAAAGAGAAGGTTAAGCCATCATCCGATATCTAATGTGGCTGGTAATCTAGTCCCGTTTTGATCAAGAGCAGTGTTAAGTGTTCAGCCTGCATCTAGTTTCAGAAAACTCCAGTTCCCCACTTATTGTTTTTAAGAAACTGTGAGATGAGATTAATTGCTACACACAAGTTCAAAAGCTACTTTCATTTACAAAACATGCAACTGGATCCTTGTGCTTTTGACGTATCGTTTGGTTTCGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733355" ref_strand="+" ref_description="SGN-E733355 [LB04CF04]">
      <seq>tctaggtagcattgctgtgctttgttgttggagttttgggggcaaaagctgagcagttgagcacgaaagagtgtgaaaatctcgggtttacgggtttagctctatgctccgattgtaggactcttgctgagtatgtcaaagatcaagagttggtgtctgaatgtttgagctgttgcacagaagactctgatgatgccatgagtaaggttgtttattctggagcagttttggaagtctgcatgagaaaactagttttctatcccgaagtcgttgggttcattgaagaagagaaagaccaattcccttttgtaaaagttcaatatgcatttaattctccaccaaagttgatcatgttggatgatcacggagagcaaaaggaaaccattagaattgataactggaaacgtgagcacatattgcagttcttgaaagagaaggttaagccatcatccgatatctaatgtggctggtaatctagtcccgttttgatcaagagcagtgttaagtgttcagcctgcatctagtttcagaaaactccagttccccacttattgtttttaagaaactgtgagatgagattaattgctacacacaagttcaaaagctactttcatttacaaaacatgcaactggatccttgtgcttttgacgtatcgtttggtttcgtcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80843" stop="87417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81143" g_stop="81289" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81290" i_stop="85028" i_length="3739">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85029" g_stop="85087" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="206" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85088" i_stop="86174" i_length="1087">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86175" g_stop="86356" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="388" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86357" i_stop="86836" i_length="480">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86837" g_stop="87117" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="669" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="670" polyA_stop="680"/>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E733355" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81143" e_stop="81289"/>
          <exon e_start="85029" e_stop="85087"/>
          <exon e_start="86175" e_stop="86356"/>
          <exon e_start="86837" e_stop="87117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGGTAGCATTGCTGTGCTTTGTTGTTGGAGTTTTGGGGGCAAAAGCTGAGCAGTTGAGCACGAAAGAGTGTGAAAATCTCGGGTTTACGGGTTTAGCTCTATGCTCCGATTGTAGGACTCTTGCTGAGTATGTCAAAGATCAAGGTTCTTTCTAAAACTCTCCATCTTTTGTTGTCTCTCTATATATGTAAATTAAATGCAGATAATTTCTGGGTTTTTGTTAAATTTAGTGTATGAGTAGTGGGGTAAAAGGTTTGTGGGATTGAGGGAATTTATTGACCTTGACATTGTTTTCAAGGAGACTGAAGATGAGTTTTGATCTTTTATAAGTTTTGGATATGAGATGGCCTCAGGTGTAGTTTTTATAAGGTTAGAGCAAATGGGTTCAGAAGGGGATGATTAAAAGAGCTATATCCAGGGCTGATTAGCTTCCTGAATGAGTTGGAGAAAAAACCTTGAAGACTGCAGTTTAATTGAAAGAGAACAGGGAACTGGAGGAATTGGATATAAGGGCTTAGATTAAAAAAATCAAGTGATATTGTTTATCTTATATGTGGAGAACCTTGTAATGGAAGAAATTCGGTAAAGAACCATAAACAAGATCAGAATTCTTTTTTTTAAGAGTTACAGAATCCTACACTAGGTAATAGCATAAGTGGGAGATCTCTCTCCCTCTTCGTGCATGCCAAACAACTTTTACATACTAATCTCTTAGAAAATATGACAATATTGACAATGAACCTAAGGAGAACATAAGCAACTTATCAAATAAACCTGTGCCATGGTGAGCCACTGCTTTGAAAGCAATTTCGGCTTAACTAGGGTGGTAATCGTGTGAGACTGGTCACTGGTCACTCCTAAAGTCATGGCTAGAAGTTTGGAGTTTGCAGAAATACAATTGAGAGTAACAAGATTGAGAAGAACAACTTTGAGGGAATGAGAGGGTTCTTTCGTAATTGATAATTCACAAGATTGGTTTAGCTTTGGAAAGACTATAACCCTTTTCTTCTTTTTTTGTAAATATGGTTTTTGAATACTACCTATGTACTGACCGAAATAAAAATGTTACTAGTGTCAAAAAAAAAAAAGGGCTACTTCTATAGGCTAAGTTGTTGAGTTATTATAGAAACAAAAAATTATTCAAAGAGTTGGGTTACAAAATTTGTTTTGGTGCAATTACATAGTGCAAGAAAATGATAAGAAAAAAAAGTCAGGCTAAAAGGGTGAGCCATTCCACAACGCGCACGCATCAAGACCATGAGTCGAGCTAGGCGACATATTTTGTAATTACCTATTTAAGGTGATGTCCTTGGTAAGTTGAAATTGTGTCATGTTGTGTACTTTTCCCTAATCACGTCTCATCAATACTTCTTTGGTCTACTCTACATCTCATGAAACCACGCATGGCCAACCTCTCGCCATCCGTGCATCTCGCCACATGCCCGAATCATCTCAGTCTTGCTTTCCTCCTCTTGTCCTCCACCAAAGTCACTCCCACCTAGTACCGGATATCCTCATTTGTAATCTTACCTCATTATGCCCACACATCTATCACATCATCCTCATATCTGACACTATCTTTCTGAATGTGAGAGTTCTTGACTAGAACACTTTGCTGTATACTACAAAGCTGGTTTAACTACCACATTGTAGAATTTGTCTTTTAAGTGTTTGTGCACTTTCTTATTACACATGACTCCAAATGTGAGCCTCCATTTCAGCAACCCTGCACCAATATGGTGAGTGACGTCATCGTCAATCTCCCAGTTACCTTGGATAATAGATCCAAGATACTTGAAACTTCCTCTCTTTTGCTTGACCATTGTATCGTGAGCCCTTTAGAAAGACTACCCAAGTCTTCCGTAAAAGGCAACCAAACCTTTATGATCATGTAGGTGATTCCATCGAGTCTATCTCAACACATGCATTAAGTGCAAAATGAGCTCAATCTTACAAAGTACCAAGAGACTTCAGAGGGATAGGAAATGTAGTGCATATCGAAGGCTCGTATAACTTCATTTGATCACAGATTGTTACCTTTGCCTTAGTGGGGAAATGTTGGTTTTATTCAAAATTTGTTGGTAATGCGAAGCCATAGAATTGTTTGTCGCTCCCTTTTGCACTGCTCTGTCTTGTGTAGTAGACAAAAGTTCCGTTTAGAAAGATTAAATTTATTGTGAGCACTTTATACACAAACTTTTCTTATGGGATTAGTTGAGTTCCCTCCATGCTTGTTGAGGCGAAACTTGACAACCACACACGTATCGCTGCCCTCTCCATTCGTCCGACTCAGCTCGTGAGGCGTGCGCGATGCAACTGCTGCAAAATGAATTTTGTAACTGCTACTTGAATAAGTCCGATAACAACAGAGTTTATTTTCTATAACAGCTACAAATTAATTCGTGTAAAGTTGTAGTTGTTTCTTTCATAACAACTCTAGCAGATGGCCTAGAAAAGCGGATCTGTATGAATTATCAAATACAGAAAAAAGTCATTCTCATTTCCTCAAAGTCGTTGGGCAATCGTATTTATGCGAACTCCAAACTTTCAACCACGAGTGCTCGTTTTGGGATTGCGCCTGTAACTTGGGGATCAACCAGTCTCAAACAATTTACATCATGGTTTAGGCCGAAATCACTTTCATGGGAGTGGCTCTCTATGACACAATGTTTTATTCAATAAGTTGCCTCTGTTACTGTCAATAGTTTCCAAATCATGCTTACTCGGCTTTTCTGCTGGGCACCAGTAATGGTATTTGATATTTGCTGTAACTCATCCAAGAAGAGATTTTTCCTACATACATGGATAATTAAGATTTGTTGTTTTTGCTCTAGGCAACCAAATGTTTGATACTTGCTTTTAATCACAGCTGTGTTTGGATTTGTTTAACTAGTTCTAGTCTGGGAAAGAAACAATAATGGACCAATATCAGGAGTCAATCTAAAGCCCGAATTAATGATGTACTGCTACATAAAAACTATCATTATGGGGCAAACAAACCTGCAATGATTTATCTATGCTATAAATATCAAATAGCTTAAGGATCACTACACCATGTACCCAGTTGGTGGGATTTCGATAAGTTTGAAAATTTCAAGGAAAAGATCATACAAGTACTAAATTGACATTGAAAAGCTTTGTGGAACATTGGTAAAAACGATCTGGAAGGTAGTGGAAATACCAGCTTACTCGCTTATCTTTAGTGTTGCAAATTCACAAATATTTTGCTTCAATTATGCAACCCTCTGTAAGTGCATGAATAACTTTTTCATTTTTTTCTTTAATGTATGCATTTCACATTTGCTACCTCTGTATCTTTGCCCTCATCCTTGCACTGCAAAAAAGTTTTCTTAATTTCTATGCAAATACTGGGACCTCTAAAAAAATTGGGATGTATTGTTTGCTGAACTTAAGTCTTAATGTGAAAGGATTATATGGATATCTAAAAGCCGTGTATCGTGCTGTCTGATTGTGATTAGAAATGTTTGAACTTATTTAACCTTTCACCATGTCCTGTAAATTGAATACTGAATTTGACTAATCATTATGATTTATTGAGAAAAAGGACTATGCATAGTTAGAGAGAGCAATTTCATCAAATGAAAAGAGGAAAAAAACTAGAACCATGGCGCTAATTTAGAAAACTTGACCAAATAAAGTATATTAATAGAAGTCATGCTCCATATTTGGATGCAGGAGCTATTGCTGTTTTATTGGTTCTTTCCTCTTTTTTTTGTGGATTGTTAGGAGTTTATAATGACCTAATGGACTGCTCTTCTCTCCATGTCCTTGTGTAATTATTTTTTCCTAATTTGATTTCAAATGCATGTTGACAAGTATAATTATTTCTTGCTAAACAGTATTGATTACCTGTTTCCTACAGAGTTGGTGTCTGAATGTTTGAGCTGTTGCACAGAAGACTCTGATGATGCCATGAGTAAGGTACAGATGCGACTGAGATATTTCATCTGCTAGAGGTTATTTTTAGCAGTTATATTTCAGGTCGTATATAGAGTTTTGAAGAGTCTCCTCTGAGTTTCTGGTCTCTAGTGTTGCCCAATATTTTTGAAAATCATGGCTTCCATGTAAACATTGTAGAGGTAAGAGATTCATATTAAGATGGTTTTGATAAGGATGTTTGCACCCAAATAATAGTTCAAAAAAATTGAGGCAAAACTTAAACAGAAGATGAAAACACTTATCTGCCTTCCCCTTGTTCCTCATCTATTTTTTTTCTTTTGGTTTGCTTGTTTATGTCAGGGAAGTTGAAAATTTAAACTTTTTGGGTTTCGATACCTGCCTCAAAGTCCCCTAGGCCCTAGTATATGGGAAATGAATAAAGCGGTAAAATATGAGAAGTGGACCACTCGAGTCTTCTTTTTGTAAGCACCTTGACCAAAAAGGTAGGGGGGGGGGGGTGGAGGGAGAAAATAAGATGCCAAAATATCACTTTGGAGAAGGGTGTCTTTTCTTTTTTTTTTTTTTCCTTTTTTGAATAATCGAGAATCCGCTCGGGCCAATGGAGCATAATTTGGAACTCGCTGGATAATAGCTTACTCTACCTTTCTCCACTTAAATACCATGTTTTTGTCTGTAGCAGCGTACGAACCATGACATTTGTCTAACCCACACATTACGTGTAGCGTTCTTACCCCTAGATCAAACTAATGGGGGCATTTTTCATTTCTTTTTTTTAATCCATCCTTTTCTCATACTTGGTGGATGGTGGAATTCTTAAAGATTCTACTGTTGCACCAAGTACATGACATGCTATCTCATAACAGTCAACTAATGGCTAGAGTAAATCATGAACTTCCTGAAAGGCCAGACTAATGGCTAGAGTAAATCATGAACTTCCTGAAATGCCAGACTAACATATGAGCTGTCACATTTTCTCTCAAAAAAATAAATAACATATGAGCTGTTACATCTATGGCAAAGGTGGTACTTCTTTACTGATTGATCAACATGATGGCTTTACTTTGAAATGGTACTTCTTAATTTTAATCTACTCTAATTGTGAATGCAGGTTGTTTATTCTGGAGCAGTTTTGGAAGTCTGCATGAGAAAACTAGTTTTCTATCCCGAAGTCGTTGGGTTCATTGAAGAAGAGAAAGACCAATTCCCTTTTGTAAAAGTTCAATATGCATTTAATTCTCCACCAAAGTTGATCATGTTGGATGATCACGGAGAGCAAAAGGAAACCATTAGGTCATCTTCCTTCATCTCTGTTTCCCTTCTTTCCTTAGTGTTTTGAGTCTGAGCACTACAGATTTGTGTTTCTATAATACCTCTACATTGCATTGAGCATGTTCTGTATTAGTCATCAGGACCGTTATGGCCAGATATATTTTCTAAATCCTCCTCTTTCATGTCTTCCTATTCCATTTTCGGGAAACATGATTATATTCAGCCATACAGGTAGACAGTCATCTAGTTGTCACCAAAAATTAACTTTTGGGTCATGAGTCATGAGTGTGTGGCACATGCTAAAAGATTTCAGAGAACTTAGTGTCCTCGGGAAGCCTGAGTACATGGAGTTGCAATTCACAGCTTTAAGTAAATTTTTCCTGATGAAAATTAGTTTGCACCCTGTGCATTGCATCAAGTAGAATCATTCCTTTTGTACGCATGTTTGATAACAGCCAAATCTTTATTCTGGTTATCTAATGTATTCGATACATTTTACAGAATTGATAACTGGAAACGTGAGCACATATTGCAGTTCTTGAAAGAGAAGGTTAAGCCATCATCCGATATCTAATGTGGCTGGTAATCTAGTCCCGTTTTGATCAAGAGCAGTGTTAAGTGTTCAGCCTGCATCTAGTTTCAGAAAACTCCAGTTCCCCACTTATTGTTTTTAAGAAACTGTGAGATGAGATTAATTGCTACACACAAGTTCAAAAGCTACTTTCATTTACAAAACATGCAACTGGATCCTTGTGCTTTTGACGTATCGTTTGGTTTCGTCA</genome_strand>
        <mrna_strand>TCTAGGTAGCATTGCTGTGCTTTGTTGTTGGAGTTTTGGGGGCAAAAGCTGAGCAGTTGAGCACGAAAGAGTGTGAAAATCTCGGGTTTACGGGTTTAGCTCTATGCTCCGATTGTAGGACTCTTGCTGAGTATGTCAAAGATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTGTCTGAATGTTTGAGCTGTTGCACAGAAGACTCTGATGATGCCATGAGTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTATTCTGGAGCAGTTTTGGAAGTCTGCATGAGAAAACTAGTTTTCTATCCCGAAGTCGTTGGGTTCATTGAAGAAGAGAAAGACCAATTCCCTTTTGTAAAAGTTCAATATGCATTTAATTCTCCACCAAAGTTGATCATGTTGGATGATCACGGAGAGCAAAAGGAAACCATTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGATAACTGGAAACGTGAGCACATATTGCAGTTCTTGAAAGAGAAGGTTAAGCCATCATCCGATATCTAATGTGGCTGGTAATCTAGTCCCGTTTTGATCAAGAGCAGTGTTAAGTGTTCAGCCTGCATCTAGTTTCAGAAAACTCCAGTTCCCCACTTATTGTTTTTAAGAAACTGTGAGATGAGATTAATTGCTACACACAAGTTCAAAAGCTACTTTCATTTACAAAACATGCAACTGGATCCTTGTGCTTTTGACGTATCGTTTGGTTTCGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716279" ref_strand="+" ref_description="SGN-E716279 [FB16CD12]">
      <seq>ggtttagctctatgctccgattgtaggactcttgctgagtatgtcaaagatcaagagttggtgtctgaatgtttgagctgttgcacagaagactctgatgatgccatgagtaaggttgtttattctggagcagttttggaagtctgcatgagaaaactagttttctatcccgaagtcgttgggttcattgaagaagagaaagaccaattcccttttgtaaaagttcaatatgcatttaattctccaccaaagttgatcatgttggatgatcacggagagcaaaaggaaaccattagaattgataactggaaacgtgagcacatattgcagttcttgaaagagaaggttaagccatcatccgatatctaatgtggctggtaatctagtcccgttttgatcaagagcagtgttaagtgttcagcctgcatctagtttcagaaaactccagttccccacttattgtttttaagaaactgtgagatgagattaattgctacacacaagttcaaaagctactttcatttacaaaacatgcaactggatccttgtgcttttgacgtatcgtttggtttcgtcagtcnnnnnanaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80935" stop="87420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81235" g_stop="81289" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81290" i_stop="85028" i_length="3739">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85029" g_stop="85087" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="114" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85088" i_stop="86174" i_length="1087">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86175" g_stop="86356" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="296" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86357" i_stop="86836" i_length="480">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86837" g_stop="87117" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="577" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="586" polyA_stop="600"/>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E716279" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81235" e_stop="81289"/>
          <exon e_start="85029" e_stop="85087"/>
          <exon e_start="86175" e_stop="86356"/>
          <exon e_start="86837" e_stop="87117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTAGCTCTATGCTCCGATTGTAGGACTCTTGCTGAGTATGTCAAAGATCAAGGTTCTTTCTAAAACTCTCCATCTTTTGTTGTCTCTCTATATATGTAAATTAAATGCAGATAATTTCTGGGTTTTTGTTAAATTTAGTGTATGAGTAGTGGGGTAAAAGGTTTGTGGGATTGAGGGAATTTATTGACCTTGACATTGTTTTCAAGGAGACTGAAGATGAGTTTTGATCTTTTATAAGTTTTGGATATGAGATGGCCTCAGGTGTAGTTTTTATAAGGTTAGAGCAAATGGGTTCAGAAGGGGATGATTAAAAGAGCTATATCCAGGGCTGATTAGCTTCCTGAATGAGTTGGAGAAAAAACCTTGAAGACTGCAGTTTAATTGAAAGAGAACAGGGAACTGGAGGAATTGGATATAAGGGCTTAGATTAAAAAAATCAAGTGATATTGTTTATCTTATATGTGGAGAACCTTGTAATGGAAGAAATTCGGTAAAGAACCATAAACAAGATCAGAATTCTTTTTTTTAAGAGTTACAGAATCCTACACTAGGTAATAGCATAAGTGGGAGATCTCTCTCCCTCTTCGTGCATGCCAAACAACTTTTACATACTAATCTCTTAGAAAATATGACAATATTGACAATGAACCTAAGGAGAACATAAGCAACTTATCAAATAAACCTGTGCCATGGTGAGCCACTGCTTTGAAAGCAATTTCGGCTTAACTAGGGTGGTAATCGTGTGAGACTGGTCACTGGTCACTCCTAAAGTCATGGCTAGAAGTTTGGAGTTTGCAGAAATACAATTGAGAGTAACAAGATTGAGAAGAACAACTTTGAGGGAATGAGAGGGTTCTTTCGTAATTGATAATTCACAAGATTGGTTTAGCTTTGGAAAGACTATAACCCTTTTCTTCTTTTTTTGTAAATATGGTTTTTGAATACTACCTATGTACTGACCGAAATAAAAATGTTACTAGTGTCAAAAAAAAAAAAGGGCTACTTCTATAGGCTAAGTTGTTGAGTTATTATAGAAACAAAAAATTATTCAAAGAGTTGGGTTACAAAATTTGTTTTGGTGCAATTACATAGTGCAAGAAAATGATAAGAAAAAAAAGTCAGGCTAAAAGGGTGAGCCATTCCACAACGCGCACGCATCAAGACCATGAGTCGAGCTAGGCGACATATTTTGTAATTACCTATTTAAGGTGATGTCCTTGGTAAGTTGAAATTGTGTCATGTTGTGTACTTTTCCCTAATCACGTCTCATCAATACTTCTTTGGTCTACTCTACATCTCATGAAACCACGCATGGCCAACCTCTCGCCATCCGTGCATCTCGCCACATGCCCGAATCATCTCAGTCTTGCTTTCCTCCTCTTGTCCTCCACCAAAGTCACTCCCACCTAGTACCGGATATCCTCATTTGTAATCTTACCTCATTATGCCCACACATCTATCACATCATCCTCATATCTGACACTATCTTTCTGAATGTGAGAGTTCTTGACTAGAACACTTTGCTGTATACTACAAAGCTGGTTTAACTACCACATTGTAGAATTTGTCTTTTAAGTGTTTGTGCACTTTCTTATTACACATGACTCCAAATGTGAGCCTCCATTTCAGCAACCCTGCACCAATATGGTGAGTGACGTCATCGTCAATCTCCCAGTTACCTTGGATAATAGATCCAAGATACTTGAAACTTCCTCTCTTTTGCTTGACCATTGTATCGTGAGCCCTTTAGAAAGACTACCCAAGTCTTCCGTAAAAGGCAACCAAACCTTTATGATCATGTAGGTGATTCCATCGAGTCTATCTCAACACATGCATTAAGTGCAAAATGAGCTCAATCTTACAAAGTACCAAGAGACTTCAGAGGGATAGGAAATGTAGTGCATATCGAAGGCTCGTATAACTTCATTTGATCACAGATTGTTACCTTTGCCTTAGTGGGGAAATGTTGGTTTTATTCAAAATTTGTTGGTAATGCGAAGCCATAGAATTGTTTGTCGCTCCCTTTTGCACTGCTCTGTCTTGTGTAGTAGACAAAAGTTCCGTTTAGAAAGATTAAATTTATTGTGAGCACTTTATACACAAACTTTTCTTATGGGATTAGTTGAGTTCCCTCCATGCTTGTTGAGGCGAAACTTGACAACCACACACGTATCGCTGCCCTCTCCATTCGTCCGACTCAGCTCGTGAGGCGTGCGCGATGCAACTGCTGCAAAATGAATTTTGTAACTGCTACTTGAATAAGTCCGATAACAACAGAGTTTATTTTCTATAACAGCTACAAATTAATTCGTGTAAAGTTGTAGTTGTTTCTTTCATAACAACTCTAGCAGATGGCCTAGAAAAGCGGATCTGTATGAATTATCAAATACAGAAAAAAGTCATTCTCATTTCCTCAAAGTCGTTGGGCAATCGTATTTATGCGAACTCCAAACTTTCAACCACGAGTGCTCGTTTTGGGATTGCGCCTGTAACTTGGGGATCAACCAGTCTCAAACAATTTACATCATGGTTTAGGCCGAAATCACTTTCATGGGAGTGGCTCTCTATGACACAATGTTTTATTCAATAAGTTGCCTCTGTTACTGTCAATAGTTTCCAAATCATGCTTACTCGGCTTTTCTGCTGGGCACCAGTAATGGTATTTGATATTTGCTGTAACTCATCCAAGAAGAGATTTTTCCTACATACATGGATAATTAAGATTTGTTGTTTTTGCTCTAGGCAACCAAATGTTTGATACTTGCTTTTAATCACAGCTGTGTTTGGATTTGTTTAACTAGTTCTAGTCTGGGAAAGAAACAATAATGGACCAATATCAGGAGTCAATCTAAAGCCCGAATTAATGATGTACTGCTACATAAAAACTATCATTATGGGGCAAACAAACCTGCAATGATTTATCTATGCTATAAATATCAAATAGCTTAAGGATCACTACACCATGTACCCAGTTGGTGGGATTTCGATAAGTTTGAAAATTTCAAGGAAAAGATCATACAAGTACTAAATTGACATTGAAAAGCTTTGTGGAACATTGGTAAAAACGATCTGGAAGGTAGTGGAAATACCAGCTTACTCGCTTATCTTTAGTGTTGCAAATTCACAAATATTTTGCTTCAATTATGCAACCCTCTGTAAGTGCATGAATAACTTTTTCATTTTTTTCTTTAATGTATGCATTTCACATTTGCTACCTCTGTATCTTTGCCCTCATCCTTGCACTGCAAAAAAGTTTTCTTAATTTCTATGCAAATACTGGGACCTCTAAAAAAATTGGGATGTATTGTTTGCTGAACTTAAGTCTTAATGTGAAAGGATTATATGGATATCTAAAAGCCGTGTATCGTGCTGTCTGATTGTGATTAGAAATGTTTGAACTTATTTAACCTTTCACCATGTCCTGTAAATTGAATACTGAATTTGACTAATCATTATGATTTATTGAGAAAAAGGACTATGCATAGTTAGAGAGAGCAATTTCATCAAATGAAAAGAGGAAAAAAACTAGAACCATGGCGCTAATTTAGAAAACTTGACCAAATAAAGTATATTAATAGAAGTCATGCTCCATATTTGGATGCAGGAGCTATTGCTGTTTTATTGGTTCTTTCCTCTTTTTTTTGTGGATTGTTAGGAGTTTATAATGACCTAATGGACTGCTCTTCTCTCCATGTCCTTGTGTAATTATTTTTTCCTAATTTGATTTCAAATGCATGTTGACAAGTATAATTATTTCTTGCTAAACAGTATTGATTACCTGTTTCCTACAGAGTTGGTGTCTGAATGTTTGAGCTGTTGCACAGAAGACTCTGATGATGCCATGAGTAAGGTACAGATGCGACTGAGATATTTCATCTGCTAGAGGTTATTTTTAGCAGTTATATTTCAGGTCGTATATAGAGTTTTGAAGAGTCTCCTCTGAGTTTCTGGTCTCTAGTGTTGCCCAATATTTTTGAAAATCATGGCTTCCATGTAAACATTGTAGAGGTAAGAGATTCATATTAAGATGGTTTTGATAAGGATGTTTGCACCCAAATAATAGTTCAAAAAAATTGAGGCAAAACTTAAACAGAAGATGAAAACACTTATCTGCCTTCCCCTTGTTCCTCATCTATTTTTTTTCTTTTGGTTTGCTTGTTTATGTCAGGGAAGTTGAAAATTTAAACTTTTTGGGTTTCGATACCTGCCTCAAAGTCCCCTAGGCCCTAGTATATGGGAAATGAATAAAGCGGTAAAATATGAGAAGTGGACCACTCGAGTCTTCTTTTTGTAAGCACCTTGACCAAAAAGGTAGGGGGGGGGGGGTGGAGGGAGAAAATAAGATGCCAAAATATCACTTTGGAGAAGGGTGTCTTTTCTTTTTTTTTTTTTTCCTTTTTTGAATAATCGAGAATCCGCTCGGGCCAATGGAGCATAATTTGGAACTCGCTGGATAATAGCTTACTCTACCTTTCTCCACTTAAATACCATGTTTTTGTCTGTAGCAGCGTACGAACCATGACATTTGTCTAACCCACACATTACGTGTAGCGTTCTTACCCCTAGATCAAACTAATGGGGGCATTTTTCATTTCTTTTTTTTAATCCATCCTTTTCTCATACTTGGTGGATGGTGGAATTCTTAAAGATTCTACTGTTGCACCAAGTACATGACATGCTATCTCATAACAGTCAACTAATGGCTAGAGTAAATCATGAACTTCCTGAAAGGCCAGACTAATGGCTAGAGTAAATCATGAACTTCCTGAAATGCCAGACTAACATATGAGCTGTCACATTTTCTCTCAAAAAAATAAATAACATATGAGCTGTTACATCTATGGCAAAGGTGGTACTTCTTTACTGATTGATCAACATGATGGCTTTACTTTGAAATGGTACTTCTTAATTTTAATCTACTCTAATTGTGAATGCAGGTTGTTTATTCTGGAGCAGTTTTGGAAGTCTGCATGAGAAAACTAGTTTTCTATCCCGAAGTCGTTGGGTTCATTGAAGAAGAGAAAGACCAATTCCCTTTTGTAAAAGTTCAATATGCATTTAATTCTCCACCAAAGTTGATCATGTTGGATGATCACGGAGAGCAAAAGGAAACCATTAGGTCATCTTCCTTCATCTCTGTTTCCCTTCTTTCCTTAGTGTTTTGAGTCTGAGCACTACAGATTTGTGTTTCTATAATACCTCTACATTGCATTGAGCATGTTCTGTATTAGTCATCAGGACCGTTATGGCCAGATATATTTTCTAAATCCTCCTCTTTCATGTCTTCCTATTCCATTTTCGGGAAACATGATTATATTCAGCCATACAGGTAGACAGTCATCTAGTTGTCACCAAAAATTAACTTTTGGGTCATGAGTCATGAGTGTGTGGCACATGCTAAAAGATTTCAGAGAACTTAGTGTCCTCGGGAAGCCTGAGTACATGGAGTTGCAATTCACAGCTTTAAGTAAATTTTTCCTGATGAAAATTAGTTTGCACCCTGTGCATTGCATCAAGTAGAATCATTCCTTTTGTACGCATGTTTGATAACAGCCAAATCTTTATTCTGGTTATCTAATGTATTCGATACATTTTACAGAATTGATAACTGGAAACGTGAGCACATATTGCAGTTCTTGAAAGAGAAGGTTAAGCCATCATCCGATATCTAATGTGGCTGGTAATCTAGTCCCGTTTTGATCAAGAGCAGTGTTAAGTGTTCAGCCTGCATCTAGTTTCAGAAAACTCCAGTTCCCCACTTATTGTTTTTAAGAAACTGTGAGATGAGATTAATTGCTACACACAAGTTCAAAAGCTACTTTCATTTACAAAACATGCAACTGGATCCTTGTGCTTTTGACGTATCGTTTGGTTTCGTCA</genome_strand>
        <mrna_strand>GGTTTAGCTCTATGCTCCGATTGTAGGACTCTTGCTGAGTATGTCAAAGATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTGTCTGAATGTTTGAGCTGTTGCACAGAAGACTCTGATGATGCCATGAGTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTATTCTGGAGCAGTTTTGGAAGTCTGCATGAGAAAACTAGTTTTCTATCCCGAAGTCGTTGGGTTCATTGAAGAAGAGAAAGACCAATTCCCTTTTGTAAAAGTTCAATATGCATTTAATTCTCCACCAAAGTTGATCATGTTGGATGATCACGGAGAGCAAAAGGAAACCATTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGATAACTGGAAACGTGAGCACATATTGCAGTTCTTGAAAGAGAAGGTTAAGCCATCATCCGATATCTAATGTGGCTGGTAATCTAGTCCCGTTTTGATCAAGAGCAGTGTTAAGTGTTCAGCCTGCATCTAGTTTCAGAAAACTCCAGTTCCCCACTTATTGTTTTTAAGAAACTGTGAGATGAGATTAATTGCTACACACAAGTTCAAAAGCTACTTTCATTTACAAAACATGCAACTGGATCCTTGTGCTTTTGACGTATCGTTTGGTTTCGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713318" ref_strand="+" ref_description="SGN-E713318 [FB08BC06]">
      <seq>caagagttggtgtctgaatgtttgagctgttgcacagaagactctgatgatgccatgagtaaggttgtttattctggagcagttttggaagtctgcatgagaaaactagttttctatcccgaagtcgttgggttcattgaagaagagaaagaccaattcccttttgtaaaagttcaatatgcatttaattctccaccaaagttgatcatgttggatgatcacggagagcaaaaggaaaccattagaattgataactggaaacgtgagcacatattgcagttcttgaaagagaaggttaagccatcatccgatatctaatgtggctggtaatctagtcccgttttgatcaagagcagtgttaagtgttcagcctgcatctagtttcagaaaactccagttccccacttattgtttttaagaaactgtgagatgagattaattgctacacacaagttcaaaagctactttcatttacaaaacatgcaactggatccttgtgcttttgacgtatcgtttggtttcgtcnaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84727" stop="87416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85025" g_stop="85087" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85088" i_stop="86174" i_length="1087">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86175" g_stop="86356" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="245" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86357" i_stop="86836" i_length="480">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86837" g_stop="87117" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="526" r_length="281" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="527" polyA_stop="544"/>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E713318" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85025" e_stop="85087"/>
          <exon e_start="86175" e_stop="86356"/>
          <exon e_start="86837" e_stop="87117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAGTTGGTGTCTGAATGTTTGAGCTGTTGCACAGAAGACTCTGATGATGCCATGAGTAAGGTACAGATGCGACTGAGATATTTCATCTGCTAGAGGTTATTTTTAGCAGTTATATTTCAGGTCGTATATAGAGTTTTGAAGAGTCTCCTCTGAGTTTCTGGTCTCTAGTGTTGCCCAATATTTTTGAAAATCATGGCTTCCATGTAAACATTGTAGAGGTAAGAGATTCATATTAAGATGGTTTTGATAAGGATGTTTGCACCCAAATAATAGTTCAAAAAAATTGAGGCAAAACTTAAACAGAAGATGAAAACACTTATCTGCCTTCCCCTTGTTCCTCATCTATTTTTTTTCTTTTGGTTTGCTTGTTTATGTCAGGGAAGTTGAAAATTTAAACTTTTTGGGTTTCGATACCTGCCTCAAAGTCCCCTAGGCCCTAGTATATGGGAAATGAATAAAGCGGTAAAATATGAGAAGTGGACCACTCGAGTCTTCTTTTTGTAAGCACCTTGACCAAAAAGGTAGGGGGGGGGGGGTGGAGGGAGAAAATAAGATGCCAAAATATCACTTTGGAGAAGGGTGTCTTTTCTTTTTTTTTTTTTTCCTTTTTTGAATAATCGAGAATCCGCTCGGGCCAATGGAGCATAATTTGGAACTCGCTGGATAATAGCTTACTCTACCTTTCTCCACTTAAATACCATGTTTTTGTCTGTAGCAGCGTACGAACCATGACATTTGTCTAACCCACACATTACGTGTAGCGTTCTTACCCCTAGATCAAACTAATGGGGGCATTTTTCATTTCTTTTTTTTAATCCATCCTTTTCTCATACTTGGTGGATGGTGGAATTCTTAAAGATTCTACTGTTGCACCAAGTACATGACATGCTATCTCATAACAGTCAACTAATGGCTAGAGTAAATCATGAACTTCCTGAAAGGCCAGACTAATGGCTAGAGTAAATCATGAACTTCCTGAAATGCCAGACTAACATATGAGCTGTCACATTTTCTCTCAAAAAAATAAATAACATATGAGCTGTTACATCTATGGCAAAGGTGGTACTTCTTTACTGATTGATCAACATGATGGCTTTACTTTGAAATGGTACTTCTTAATTTTAATCTACTCTAATTGTGAATGCAGGTTGTTTATTCTGGAGCAGTTTTGGAAGTCTGCATGAGAAAACTAGTTTTCTATCCCGAAGTCGTTGGGTTCATTGAAGAAGAGAAAGACCAATTCCCTTTTGTAAAAGTTCAATATGCATTTAATTCTCCACCAAAGTTGATCATGTTGGATGATCACGGAGAGCAAAAGGAAACCATTAGGTCATCTTCCTTCATCTCTGTTTCCCTTCTTTCCTTAGTGTTTTGAGTCTGAGCACTACAGATTTGTGTTTCTATAATACCTCTACATTGCATTGAGCATGTTCTGTATTAGTCATCAGGACCGTTATGGCCAGATATATTTTCTAAATCCTCCTCTTTCATGTCTTCCTATTCCATTTTCGGGAAACATGATTATATTCAGCCATACAGGTAGACAGTCATCTAGTTGTCACCAAAAATTAACTTTTGGGTCATGAGTCATGAGTGTGTGGCACATGCTAAAAGATTTCAGAGAACTTAGTGTCCTCGGGAAGCCTGAGTACATGGAGTTGCAATTCACAGCTTTAAGTAAATTTTTCCTGATGAAAATTAGTTTGCACCCTGTGCATTGCATCAAGTAGAATCATTCCTTTTGTACGCATGTTTGATAACAGCCAAATCTTTATTCTGGTTATCTAATGTATTCGATACATTTTACAGAATTGATAACTGGAAACGTGAGCACATATTGCAGTTCTTGAAAGAGAAGGTTAAGCCATCATCCGATATCTAATGTGGCTGGTAATCTAGTCCCGTTTTGATCAAGAGCAGTGTTAAGTGTTCAGCCTGCATCTAGTTTCAGAAAACTCCAGTTCCCCACTTATTGTTTTTAAGAAACTGTGAGATGAGATTAATTGCTACACACAAGTTCAAAAGCTACTTTCATTTACAAAACATGCAACTGGATCCTTGTGCTTTTGACGTATCGTTTGGTTTCGTCA</genome_strand>
        <mrna_strand>CAAGAGTTGGTGTCTGAATGTTTGAGCTGTTGCACAGAAGACTCTGATGATGCCATGAGTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTATTCTGGAGCAGTTTTGGAAGTCTGCATGAGAAAACTAGTTTTCTATCCCGAAGTCGTTGGGTTCATTGAAGAAGAGAAAGACCAATTCCCTTTTGTAAAAGTTCAATATGCATTTAATTCTCCACCAAAGTTGATCATGTTGGATGATCACGGAGAGCAAAAGGAAACCATTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGATAACTGGAAACGTGAGCACATATTGCAGTTCTTGAAAGAGAAGGTTAAGCCATCATCCGATATCTAATGTGGCTGGTAATCTAGTCCCGTTTTGATCAAGAGCAGTGTTAAGTGTTCAGCCTGCATCTAGTTTCAGAAAACTCCAGTTCCCCACTTATTGTTTTTAAGAAACTGTGAGATGAGATTAATTGCTACACACAAGTTCAAAAGCTACTTTCATTTACAAAACATGCAACTGGATCCTTGTGCTTTTGACGTATCGTTTGGTTTCGTCN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353587" ref_strand="+" ref_description="SGN-E353587 [cTOS-15-F10]">
      <seq>aagagttggtgtctgaatgtttgagctgttgcacagaagactctgatgatgccatgagtaaggttgtttattctggagcagttttggaagtctgcatgagaaaactagttttctatcccgaagtcgttgggttcattgaagaagagaaagaccaattcccttttgtaaaagttcaatatgcatttaattctccaccaaagttgatcatgttggatgatcacggagagcaaaaggaaaccattagaattgataactggaaacgtgagcacatattgcagttcttgaaagagaaggttaagccatcatccgatatctaatgtggctggtaatctagtcccgttttgatcaagagcagtgttaagtgttcagcctgcatctagtttcagaaaactccagttccccacttattgtttttaagaaactgtgagatgagattaattgctacacacaagttcaaaagctactttcatttacaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84727" stop="87372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85026" g_stop="85087" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85088" i_stop="86174" i_length="1087">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86175" g_stop="86356" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="244" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86357" i_stop="86836" i_length="480">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86837" g_stop="87072" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="480" r_length="236" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E353587" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85026" e_stop="85087"/>
          <exon e_start="86175" e_stop="86356"/>
          <exon e_start="86837" e_stop="87072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTTGGTGTCTGAATGTTTGAGCTGTTGCACAGAAGACTCTGATGATGCCATGAGTAAGGTACAGATGCGACTGAGATATTTCATCTGCTAGAGGTTATTTTTAGCAGTTATATTTCAGGTCGTATATAGAGTTTTGAAGAGTCTCCTCTGAGTTTCTGGTCTCTAGTGTTGCCCAATATTTTTGAAAATCATGGCTTCCATGTAAACATTGTAGAGGTAAGAGATTCATATTAAGATGGTTTTGATAAGGATGTTTGCACCCAAATAATAGTTCAAAAAAATTGAGGCAAAACTTAAACAGAAGATGAAAACACTTATCTGCCTTCCCCTTGTTCCTCATCTATTTTTTTTCTTTTGGTTTGCTTGTTTATGTCAGGGAAGTTGAAAATTTAAACTTTTTGGGTTTCGATACCTGCCTCAAAGTCCCCTAGGCCCTAGTATATGGGAAATGAATAAAGCGGTAAAATATGAGAAGTGGACCACTCGAGTCTTCTTTTTGTAAGCACCTTGACCAAAAAGGTAGGGGGGGGGGGGTGGAGGGAGAAAATAAGATGCCAAAATATCACTTTGGAGAAGGGTGTCTTTTCTTTTTTTTTTTTTTCCTTTTTTGAATAATCGAGAATCCGCTCGGGCCAATGGAGCATAATTTGGAACTCGCTGGATAATAGCTTACTCTACCTTTCTCCACTTAAATACCATGTTTTTGTCTGTAGCAGCGTACGAACCATGACATTTGTCTAACCCACACATTACGTGTAGCGTTCTTACCCCTAGATCAAACTAATGGGGGCATTTTTCATTTCTTTTTTTTAATCCATCCTTTTCTCATACTTGGTGGATGGTGGAATTCTTAAAGATTCTACTGTTGCACCAAGTACATGACATGCTATCTCATAACAGTCAACTAATGGCTAGAGTAAATCATGAACTTCCTGAAAGGCCAGACTAATGGCTAGAGTAAATCATGAACTTCCTGAAATGCCAGACTAACATATGAGCTGTCACATTTTCTCTCAAAAAAATAAATAACATATGAGCTGTTACATCTATGGCAAAGGTGGTACTTCTTTACTGATTGATCAACATGATGGCTTTACTTTGAAATGGTACTTCTTAATTTTAATCTACTCTAATTGTGAATGCAGGTTGTTTATTCTGGAGCAGTTTTGGAAGTCTGCATGAGAAAACTAGTTTTCTATCCCGAAGTCGTTGGGTTCATTGAAGAAGAGAAAGACCAATTCCCTTTTGTAAAAGTTCAATATGCATTTAATTCTCCACCAAAGTTGATCATGTTGGATGATCACGGAGAGCAAAAGGAAACCATTAGGTCATCTTCCTTCATCTCTGTTTCCCTTCTTTCCTTAGTGTTTTGAGTCTGAGCACTACAGATTTGTGTTTCTATAATACCTCTACATTGCATTGAGCATGTTCTGTATTAGTCATCAGGACCGTTATGGCCAGATATATTTTCTAAATCCTCCTCTTTCATGTCTTCCTATTCCATTTTCGGGAAACATGATTATATTCAGCCATACAGGTAGACAGTCATCTAGTTGTCACCAAAAATTAACTTTTGGGTCATGAGTCATGAGTGTGTGGCACATGCTAAAAGATTTCAGAGAACTTAGTGTCCTCGGGAAGCCTGAGTACATGGAGTTGCAATTCACAGCTTTAAGTAAATTTTTCCTGATGAAAATTAGTTTGCACCCTGTGCATTGCATCAAGTAGAATCATTCCTTTTGTACGCATGTTTGATAACAGCCAAATCTTTATTCTGGTTATCTAATGTATTCGATACATTTTACAGAATTGATAACTGGAAACGTGAGCACATATTGCAGTTCTTGAAAGAGAAGGTTAAGCCATCATCCGATATCTAATGTGGCTGGTAATCTAGTCCCGTTTTGATCAAGAGCAGTGTTAAGTGTTCAGCCTGCATCTAGTTTCAGAAAACTCCAGTTCCCCACTTATTGTTTTTAAGAAACTGTGAGATGAGATTAATTGCTACACACAAGTTCAAAAGCTACTTTCATTTACAAAACA</genome_strand>
        <mrna_strand>AAGAGTTGGTGTCTGAATGTTTGAGCTGTTGCACAGAAGACTCTGATGATGCCATGAGTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTATTCTGGAGCAGTTTTGGAAGTCTGCATGAGAAAACTAGTTTTCTATCCCGAAGTCGTTGGGTTCATTGAAGAAGAGAAAGACCAATTCCCTTTTGTAAAAGTTCAATATGCATTTAATTCTCCACCAAAGTTGATCATGTTGGATGATCACGGAGAGCAAAAGGAAACCATTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGATAACTGGAAACGTGAGCACATATTGCAGTTCTTGAAAGAGAAGGTTAAGCCATCATCCGATATCTAATGTGGCTGGTAATCTAGTCCCGTTTTGATCAAGAGCAGTGTTAAGTGTTCAGCCTGCATCTAGTTTCAGAAAACTCCAGTTCCCCACTTATTGTTTTTAAGAAACTGTGAGATGAGATTAATTGCTACACACAAGTTCAAAAGCTACTTTCATTTACAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203138" ref_strand="+" ref_description="SGN-E203138 [cLEB-3-B8](-)">
      <seq>tgtttgagctgttgcacagaagactctgatgatgccatgagtaaggttgtttattctggagcagttttggaagtctgcatgagaaaactagttttgtatcccgaagtcgttgggttcattgaagaagagaaagaccaattcccttttgtaaaagttcaatatgcatttaattctccaccaaagttgatcatgttggatgatcacggagagcaaaaggaaaccattagaattgataactggaaacgtgagcacatattgcagttcttgaaagagaaggttaagccatcatccgatatctaatgtggctggtaatctagtcccgttttgatcaagagcagtgttaagtgttcagcctgcatctagtttcagaaaactccagttccccacttattgtttttaagaaactgtgagatgagattaattgctacacacaagttcaaaagctactttcatttacaaaacatgcaactggatccttgtgcttttgacgtatcgtttggtttcgtcacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84743" stop="104636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85043" g_stop="85087" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85088" i_stop="86174" i_length="1087">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86175" g_stop="86356" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="227" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86357" i_stop="86836" i_length="480">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86837" g_stop="87117" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="508" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87118" i_stop="88774" i_length="1657">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.288" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88775" g_stop="88792" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="526" r_length="18" r_score="0.722"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E203138" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85043" e_stop="85087"/>
          <exon e_start="86175" e_stop="86356"/>
          <exon e_start="86837" e_stop="87117"/>
          <exon e_start="88775" e_stop="88792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTGAGCTGTTGCACAGAAGACTCTGATGATGCCATGAGTAAGGTACAGATGCGACTGAGATATTTCATCTGCTAGAGGTTATTTTTAGCAGTTATATTTCAGGTCGTATATAGAGTTTTGAAGAGTCTCCTCTGAGTTTCTGGTCTCTAGTGTTGCCCAATATTTTTGAAAATCATGGCTTCCATGTAAACATTGTAGAGGTAAGAGATTCATATTAAGATGGTTTTGATAAGGATGTTTGCACCCAAATAATAGTTCAAAAAAATTGAGGCAAAACTTAAACAGAAGATGAAAACACTTATCTGCCTTCCCCTTGTTCCTCATCTATTTTTTTTCTTTTGGTTTGCTTGTTTATGTCAGGGAAGTTGAAAATTTAAACTTTTTGGGTTTCGATACCTGCCTCAAAGTCCCCTAGGCCCTAGTATATGGGAAATGAATAAAGCGGTAAAATATGAGAAGTGGACCACTCGAGTCTTCTTTTTGTAAGCACCTTGACCAAAAAGGTAGGGGGGGGGGGGTGGAGGGAGAAAATAAGATGCCAAAATATCACTTTGGAGAAGGGTGTCTTTTCTTTTTTTTTTTTTTCCTTTTTTGAATAATCGAGAATCCGCTCGGGCCAATGGAGCATAATTTGGAACTCGCTGGATAATAGCTTACTCTACCTTTCTCCACTTAAATACCATGTTTTTGTCTGTAGCAGCGTACGAACCATGACATTTGTCTAACCCACACATTACGTGTAGCGTTCTTACCCCTAGATCAAACTAATGGGGGCATTTTTCATTTCTTTTTTTTAATCCATCCTTTTCTCATACTTGGTGGATGGTGGAATTCTTAAAGATTCTACTGTTGCACCAAGTACATGACATGCTATCTCATAACAGTCAACTAATGGCTAGAGTAAATCATGAACTTCCTGAAAGGCCAGACTAATGGCTAGAGTAAATCATGAACTTCCTGAAATGCCAGACTAACATATGAGCTGTCACATTTTCTCTCAAAAAAATAAATAACATATGAGCTGTTACATCTATGGCAAAGGTGGTACTTCTTTACTGATTGATCAACATGATGGCTTTACTTTGAAATGGTACTTCTTAATTTTAATCTACTCTAATTGTGAATGCAGGTTGTTTATTCTGGAGCAGTTTTGGAAGTCTGCATGAGAAAACTAGTTTTCTATCCCGAAGTCGTTGGGTTCATTGAAGAAGAGAAAGACCAATTCCCTTTTGTAAAAGTTCAATATGCATTTAATTCTCCACCAAAGTTGATCATGTTGGATGATCACGGAGAGCAAAAGGAAACCATTAGGTCATCTTCCTTCATCTCTGTTTCCCTTCTTTCCTTAGTGTTTTGAGTCTGAGCACTACAGATTTGTGTTTCTATAATACCTCTACATTGCATTGAGCATGTTCTGTATTAGTCATCAGGACCGTTATGGCCAGATATATTTTCTAAATCCTCCTCTTTCATGTCTTCCTATTCCATTTTCGGGAAACATGATTATATTCAGCCATACAGGTAGACAGTCATCTAGTTGTCACCAAAAATTAACTTTTGGGTCATGAGTCATGAGTGTGTGGCACATGCTAAAAGATTTCAGAGAACTTAGTGTCCTCGGGAAGCCTGAGTACATGGAGTTGCAATTCACAGCTTTAAGTAAATTTTTCCTGATGAAAATTAGTTTGCACCCTGTGCATTGCATCAAGTAGAATCATTCCTTTTGTACGCATGTTTGATAACAGCCAAATCTTTATTCTGGTTATCTAATGTATTCGATACATTTTACAGAATTGATAACTGGAAACGTGAGCACATATTGCAGTTCTTGAAAGAGAAGGTTAAGCCATCATCCGATATCTAATGTGGCTGGTAATCTAGTCCCGTTTTGATCAAGAGCAGTGTTAAGTGTTCAGCCTGCATCTAGTTTCAGAAAACTCCAGTTCCCCACTTATTGTTTTTAAGAAACTGTGAGATGAGATTAATTGCTACACACAAGTTCAAAAGCTACTTTCATTTACAAAACATGCAACTGGATCCTTGTGCTTTTGACGTATCGTTTGGTTTCGTCAGTCCTGCTCTCTCTCTCTCTCTCTTTTTCTATAACTTTCTTTAATTACTCATTACCAGATTATTGTTAGGAATACCCCAGAGAAGGGAACACATCATATTATGAAGGATAATTACATGAGGAGTTGGAATATCCAGTTAGCTGTGCAAGCCTGCTTCTCTATAATAGTGTGTGAACTGAAATTGTCTTCCTGTATCATCTTTATTGATTATGGTCCCAAATAGGATGATCTTAGCCATGAGGATAATTCTTTCTATTCAGTATTATAAAGGGAATAAATTTCATAAAATATACAATGAAATGGTTTCATTTGTACCAAATATAGTGTAACTCAGAAGGGAATGGAAAGAGTATGATTACTAGATTGGGAGCAGTCTCTTGGAAAACCCGGACTTTACCAATCTTTGCACCACCAGAAACATTGCAAATCCCTAATAATGCCACAAGTATGAACTTTGTGGAAATCCCTAATACTGCCAGGGAGCATTATGAAGGCTGAAAAACATCTTATATGGACAATGTGTCTATGCTTTAACTGAAAAACCATAAACCTTGATGACTACCAGGCACTTGACAACTGATAAATGCACCAACATAGGCGCAGACGCTGGAGATAACAATATCCATATCTGCTATGGTTCCACGCAAGAAGAAAGTAGTTTTAAAAGATATCTCTAGTAAGAGAAAGAAAAGGTGATGTTTCCTGGACTTAAACAAACAAATGTAGATTGTATATATGTTGGAAAAACAAGACTGACATCCAGCCAAGCATGTAAAATAAGAATTTTGACTCTTCTACTTGGTGCACACATTGTCACTGGTATTCCTTTTGGACTAGTCAAATGGAAGATTGATGAAAGAACTTGTGGGAACAAGAGTAACCAATTGGGAGCAGTACTTGGAAAACCAGTGATGAGTAATGAGGTAACACAAAGGGTGAGGGCAGTTAATGGAGAAAAGGCATGTAGAAGAACGGCAAAGAGGAGGGGAGAATGGTGCCGCGGAAACTGTGGTTATGCTTCAGCTCAGATACTCATGCTATACAAATATTTTCCATTTAAATATCCAAGCTTATATTCTATCAGCAATTATCTATTCAGGTGTTGAACCAAAATCTGAGCTCTACACAGTTAGCTTTATTGAAAAGTTATACATGTCCTCAGTTCCAAAATTTGTTGTGTCAACCTACACCTGCATGCCCCCCTCCCTCTCTCGCCATGTTACCGAGGTTCTATCAGAGAAAGAGGGTTAAGAAACACAACATGGCAGTTTCACACCTAAATGTACGGTGAACAGTCTCTCCGGTGACCCACGAATTAAGACTCCGGTTGAAGTCTATACCTTGTGTAACTGCATTGATGGAATACTCAAGGAGTGTTACAGGTACCTGCACAAAATGCATGAACACTACAATTACCAGACCATGATACATATCAAACCAAAAAGATGATAAAATAGAAGACAAGTTTGACTGCTAATCTAGAGGCAAACACCGCCTTCTATAACAAAGAACTTAGGTTCTCTCTAGATATATAGTTAACTGCTTCTAAGTCAAATTCAAATTTAGTTTTACTTCTTTTTGGAAACTATTATAAAGCTAGTAGGTTGATCAATTATGTAGAAAATGATAAAACTGCTCTTAATAGATATCTTCACAGTACAAAAAACAAACACAA</genome_strand>
        <mrna_strand>TGTTTGAGCTGTTGCACAGAAGACTCTGATGATGCCATGAGTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTATTCTGGAGCAGTTTTGGAAGTCTGCATGAGAAAACTAGTTTTGTATCCCGAAGTCGTTGGGTTCATTGAAGAAGAGAAAGACCAATTCCCTTTTGTAAAAGTTCAATATGCATTTAATTCTCCACCAAAGTTGATCATGTTGGATGATCACGGAGAGCAAAAGGAAACCATTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGATAACTGGAAACGTGAGCACATATTGCAGTTCTTGAAAGAGAAGGTTAAGCCATCATCCGATATCTAATGTGGCTGGTAATCTAGTCCCGTTTTGATCAAGAGCAGTGTTAAGTGTTCAGCCTGCATCTAGTTTCAGAAAACTCCAGTTCCCCACTTATTGTTTTTAAGAAACTGTGAGATGAGATTAATTGCTACACACAAGTTCAAAAGCTACTTTCATTTACAAAACATGCAACTGGATCCTTGTGCTTTTGACGTATCGTTTGGTTTCGTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704851" ref_strand="+" ref_description="SGN-E704851 [FA25BG10]">
      <seq>cttctcttcatcgctgtgttgaagttttggtttttgagttttgagatttgctgttcgaagatggtgcgattacagccagacccattcctcaatgaactgacgagtatgtttgagcgaactactgagcatggttccgtttgggttacgcttaaacactcttctgataaatctaaagcccaacggaataagatgaagacagctggtgaaactcttgaatttaagtgcctcatccgagcaactgatgggaaaaagaatatttccacaatggttggagcaaaagatcaccagcgtttccaagcatcttatgcaattttgctgaaggcccggttgactgcactaaagaagagggagaggaaggacaagaggaaggctactgattctgacaaaaagatggatatttcgaaaaagaaatctgctgctgctaaagcctctacatgaaactttagtcctttggtttattcccccattttgtttctaggatagagttgtaggatttgaaccccatccatttggggcgacaagtctgaaacttcattacaactccactgcatagaatgaagaaaggaggtgtttttactcaatttgattattcacatctaaattagtcaaactttttaaagagcttgttgggttatggaacagttgaaggaattttgtcataatcctgatcttttaattccttgaacaacagctttggcaattgaaagtagatgggaccaaattaaaagtagtatgcctacatacttgaatgtcatgtcaactgcatatgtccatactttttgcgcgtgggaacttaaaatgacatttttttgcttctttttgttcaaccagttctttttccactgttccaaaaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="-" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103542" stop="93861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103242" g_stop="103180" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103179" i_stop="102415" i_length="765">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102414" g_stop="102321" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="157" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102320" i_stop="102229" i_length="92">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102228" g_stop="102119" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="267" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102118" i_stop="94751" i_length="7368">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94750" g_stop="94161" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="857" r_length="590" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="-" ref_id="SGN-E704851" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103242" e_stop="103180"/>
          <exon e_start="102414" e_stop="102321"/>
          <exon e_start="102228" e_stop="102119"/>
          <exon e_start="94750" e_stop="94161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTTCATCGCTGTGTTGAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATGGTAAGCGCTAACTTCAACTCATCAAAATCAATTGATCGCAATACTCTTTCGAATCAAATCTGGAAATCAAACAATGTAGAATTTTTTGATGTTAATTTTTCTTTGTTTACGCCGTTTTCAGCTTTATTTGATCTATATTTCCTTTTTGAGATTATGGGTTTCTGTAGAGTATAAATTCATGTTAGATTCTTTGTGTTCTTGAGTTGTTATGTATGTATCCCGAATCTCACTATATTGAATTGTGGAAATTAGTTAATACCAGTTTAAAATGGTGCTTATCGATTGAATTAACTAATTGGGGGTTGAGGTGATGGAAAACTTTCCCACTTAGCATTATACTCGAGTGCTGATGAATTTGATGTGTAGGTTAGAAAATTTGTTGAATCTGATGTTTTTACTTCATCCTTTAACTGGATAAAGGAGGAGGATTACATGGGTTGGGTTGATAGCCAGCGTAGAAATAAGCGAAATTACAGGAATCTTCTAAGTCTACACACTGGTTTCATCCTTGCTTTCTCTCCTGAGCACACACTCAAGCTACCCAACTACTGTATTTCTTCCTCCTTTATTCAGGTGGCACTGGTGAAGCATGCTCACATTGTTTATGTTAAGTAATCACATTGTGGAGTTCAATGTGCTTCCTATTTGTGGATACAAAATTATATGGCATTTTGCTTATTTTTGGGAAGTTTGAAAGAAGTGGCTTTGTCCATCTTTTTGGTAGAACATAAGTTGACAATTACTGATCTGAATTGGATTTGTCAGGTGCGATTACAGCCAGACCCATTCCTCAATGAACTGACGAGTATGTTTGAGCGAACTACTGAGCATGGTTCCGTTTGGGTTACGCTTAAACACTGTGAGTTTGCCTCTTCGTTGGTTTTCCTGTGTTTTGTGCTTTGTATTCTCTTTATGAGTAATACTGATTGAGCAATCTTGTCCTTTGTATAGCTTCTGATAAATCTAAAGCCCAACGGAATAAGATGAAGACAGCTGGTGAAACTCTTGAATTTAAGTGCCTCATCCGAGCAACTGATGGGAAAAAGAATATTTCCACAATGGTAATTATCACAATAGAAAGTCTCTTACCTTTTTCCATCACCTTCTTTTTGCAAGTCTTGTCGTTTTCCCCATTTTTTTGCTTTGTTGGGCACTATGTTCTCTGGAACATTGAGGGTGTTAGTTTGTTGTATGAATTATTTTTTAGCATAAGTTTAAATGTGCAAATATAGATAATTCTAGGTCCTGGCCTGTATGTTTGAGATTGAGAGCATCAAATTCAAAAAAAGGATGGTAGCCTTGTGGTGCATAGAGAATGGGAGTCGTGGTCCTTGTTTACTTGATTGATAACTAATAGGTATCGTACATGCTTGTAATACAATATTAGAGCACATAAAGGGACAATTTCTCATAAAAGGCAAACAAATTATGGATGCAACTCTTTTAGTCAGTGAACCTGTGGATTCTAGACTCGAAGGTGAAGATCCAGGGATCATGTGAAACCTAGCTATAGAGAACCCATTATGATCATGTCAACTGGGAGTTACTTCTCAACCTTCTTTAAAAAATGGGTTTTGGTGGAAGATGGTTAAAGTGGATGGTTTTTGTATCAATACTGTCCTGAATTCTAGTCATAGGAGAAATTGCTGGAATTTTCCCTCAGAGAAAGAGGACTCGGGGAGACCCCCCTCTCTTTGCCTTTTCATATTAGCTATGGAAGGTTTCAGTAGTATGATGAGAGGTACTATTCAGAACAGTGGATAAAAGGTTTCAGGATAGGCAATCAAGCAGGGGAAGAGATGTAGATTTCCTTTCATTATTGCTGATGATATAGTTGTTTTCTAAGATGCTAAAGCAGATCAGATCATGTACATCAGAATGATTTTGGTGATCTTTGGGCAATTTTTGGTCCATTTGTAAAATTGGAGGAAAGGTAGTAGTTTCCCTGTCAAAGAAGTTCCACAAATTCAATGCCTGTCCATGTTATAAGTTTCGATGATTTAACAAACTATGACATCTAGTTGGGGACCTGATCCCATGAGGGACTGAGAGTTTCAGGCAATGTGCAAAGGACAGTTGTAAAGCTGCAACTGCTGCCACAATTGCAGTGGTTGGTGCACCTTTTCAGAGGAATAGTACTCAGCCAATGGCGTTGCACTAGGTAGTTTGTCCATCTTATAATAGTCATCTTGTCAAGGGACGTTTCCTAATTTTTGAGTTGAAGATTTCCATACGGCAAAATCCACTCTCAAAAAGAAATATTCTCATATGCATCAAGAGATCTGATCGAGTGATCTACTGTTCCCTTTAGTTGTTATTTTAGTTTATCGTCTCGTGTTTATACAGTGTAAGATCTGTTCATATGTTATAAAGGAATCAGATCATTTCAGTTGTAATCGTTGTTAAAAGTTTGAGTTGTAGCTAGAGTTAGCTATGTCGTGTTCTTGAAGTCTACATTAACTTAGCTTGTTGGCGTAGTAGGCAATAGAGGTATTACTTTGTTTATGAGTAACAAAGCTGTTACGAAAGGAGAAGGGATTAAGAGTTCATTTCCTAGGTTGCAAGAGTTTGTAATCGGGATCTTAACTCTTTGAAGTAATGGAATTGGCGAAATCCTGTGAGACAGGTTGTGATTTTCTCCTTCCTTAAGCAAGGGGGTTAACACGTAAACATTTTGTGTTCTTTATTTTAAGTTTTTCTTTCTGCACTGTTCTTACTATGTGAACGGACTTGGTCCATTGACTTGTGGTGGACGCATGTAAGTCATCAGTCCAACATCTTGAGTTGTAAAATTGAGAATTTCCCGACCAACTTACTTGGGGATGCCCCTTGGAAACAATCATAAGGAGCTAGAAGTTTGGGATGAGATTATTGAAAAAATTAGTAACCAAACTCAAAATGTGTTGAGCGCTCGACTTGCTTTATGTGCGCTTCGGTGTCGTCACCAGTGTTCTAAGACATATTTTTCCTTGCCAATGTGTCTCTGCCGAAGAGGTGACACTAAACAATTGATATTTCACTTAATCACATTTTTTTTGAAAAGGTACTTTATCATTATTTTTTTCGATTTCTTCAGTCATATATTTGTTATTTGTGTTTATAATTATTCGTCTTGGACTCAGCATATATATTTGTAATTTTTTCTCCCTTTGTGCCTTTTTTCATTAAAGCCCATTCTTTGTTTGCACATAAAGGTCCAATGGGCCTTAGAGTTTTTTTGCGCTTTTCGCGTTTGATAACACTTGAAAAACTAGCCAATTGGAAAGCCCGATGTTTATCTCTTGGAGGAAGTAGTACTCTTATGAACTCAGTATTGGACTCATTGCCAACACATGTCATGTCCTTATTTCTAATGCCTTCAGGTGGAGGATACCATACAAGTTGAGGACTTTCTATGTTAGGTAATAAGGAGGGCAGAGGTATTCACTAAGTGAAATGCCAAACTGCTCAGCTTATGGTTGACTTGGTATTAGGAATCTGGGGCTTCAAAACAGATGCTTATTGACAAAATGGAGGTTTGTTGGTGAGGATCATGCACTCTGGAAGGAAGTAACTATAAAAATATGGGCAGAGTAACTATTTGTGTTCTAATATGGTCTATGTTGGCTGGGAATATAGACTGTAGTGTGTGGAATGACACCTAGATCCTTTTTCCGAGAGATAAATGGATTGGACTCGAGCCTTTAATGAGCTCATTTTCGGAACTGTTCTCATTTTGTAGCAACTCTGAAGCATCAATAGTTGACACTCTGGGTGTGTTTGTGTCACGACCCAAACCGGGTTGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATGTAATAACAGTAGAAAATAATGCGGAAGACTTAACTCATTAATAAAATCAATTCAATAACTATCAATATTCAACATCTATTATTCCCAAAACCTGGAAGTCATCATCACAAGAACATCTACGATCAAATGACTAAACTAAGAGTATTCTAAAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGTAGTAAGACTGGCTTGAATTACTGTTGAGTTGAAGACGATGGCACGTTTGCTGCACTCCACAAATAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGGGAACAGTATATATCAATATTATCGTAAATCAACTATAAAACTCAACATGTAGCCACAACAAGTATTATAATCATCAATAAGTACCATCAAGTTCATCCATGAGGGCTCAAGCCTCAACACCATACTCATTTGGGAATTATGTTCGTTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTATTCCTCTTGTGTCGGTACGTGACACTCTGATCCCCTATATCTACGTGTCGGTTCGTGACACCCGATCCCCTACATCATTCTGTAAATCATCAGGCCTTCTCTATACCAAGGTATCATCAATCCTATTACTTTAATTCATCAAGCCTTCTTCTATACCAAGGCATCATCATTAATAATGTATATTAAAGTTTCCTTTCAAGATTTGGGATTCAATATTTTCATCATGCTTATCTTATCACAATCACATAATCATATTCACGCAAACATACAATTAAGCTTATAGTAGGGTTTACAATACTACCAATACATATCATTCTCTATTAAGAGTTTACTATGAAAGCATGAAAACCATAACCTACCTCCACCGAAGAGTTGAATCAAGCAAGAATTTTCCCAAAGCTTTGTTTCTCCCTTCTCGTTCGATTTTCTCTCTCTCTCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATACCCCACTAATTAACTTAGGGTTACCTCTTTTAACCCCTCAAGAATTTGAGTTATTAATATAACCCCACGAACTTTATAATTAAGGCAAGAATAGTCAAAAACGTCCCTTAAAACTTAACCAGAAATCCGACTCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAGAGTTCAGAGACCCAAATTTCCACCAAGGGTCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCCTGCCATTCCGTCACAAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCCTCGTGCCCTTGACGGTCCGTCGTGGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAATTGAAGTCTGTTGCTCAAAACGACTAAACGGGTCGTTACAGTTTGGTATGGAGGAAAATGTTTTCCATGGAAAATGTTTTCCTAGAAAATGTTTTCCTGGAAAACAAGTAAATTTTGGACTTATTTTCTCATGTTTGGTTGGTGAGTAGAAAATATTTTCTGGATATGATTTTTAGTGTTTGATTTATGAATGAAAAATGTTTTTGAGAGACATTTTTTATTTTTACTAGAGTAAAAAATAATTTATGATATTGAAAATATTTTTCAAAATCAAAATTATTATTTTTTTGGGTGGTGGTGGGGGTGGGGTGGGGGCAGGGCGGGGGGAGGGGGAGGGGATAGGAGTGAAAAAATAAAAATTTGAATTTGATAGTATTTTTAAAAAACAAAATTAATTTTTTTGGGGATTGGGGTGGGTGGGGGCTGGTAGGGGGGCTGGCCGGGAGTGGGGGGGAGGGGTAGGAGTTAAAAAATAAAAAATTTGAAGTTGAAAATATTTTTAAAAAGCAAAATTAATTTTTTGAGGAGGGGTTGGGGTTGGGGTTGGGGGGGGCTGGCCGGGGGTTAGGGTCAAGGATCTGGTGAAAAAATAAAATTTTGAAATTGAAAATATTTATTTAAATTGATGATTTTCCCAAAAAAAAGTAATTTGAAATTGGAGGTGAGTTATGGAAAATGTTTTCCTTAATTTTTGAAGGGAAGTCATTTTCCTTAATTTTGAGGAAAATGAGTTGATTTGGAAATCATTTTCCGAAACTTTTGTCCCAACCAAACATGTGGAAATTGGAAAACATTTTCCAGAAAATGTTTTCCTTCATACCAAACACACTCTCTGTCCCCTCAAGGTGGAATCTCACATTCAGAAGGCACTTGAATGATTGAGAAGTGGGTAGATTTGTTGAGTTATTACAAGTGCTTAGTGGTTTCTTAGGTTTATCTACAGGATCAGACACAATGAGGTGGGAACATGACAGTGATGACTAGTTCTTATTAAGAAGACTCTAGAGAAATGAAGTGGTGGAGCAACCAGGAAGGAGGGGACATACCAGGTCCTTGGAAACAGATTTGGAAGTGCAGTGTCCCAAACAAGGTGCACTTGGTTGGTGACCTGAAGAGCATGTCTCACTGATGAAAAATTGGAAAGGAGGGGCTTTCAGATGGTATCCAGATGTTTTGTTTTTGGGCTAGGAGAATGAAGAAACTAATAATCATCTTTTCTTCATTGGAAGATTGTATCACAGATCTGGTCTGTGTTTCCAAGTATATCTCGAGCAAATTGGGTAACGCCTGAACACATTGCTGACCTACTTAGCTGATGCATAAGGAGTGGAGGGAGGGAACAGAGTCAGAAGGGACGGTAAGATAATACCATATTGCATATAGTGGTCAGTATGGAGAGAAGAAACAACAGATGCTTTGAGGATATCTCTAACCCAATCTAGATAATCAAAGAAAATTGTATGAATATTTTGTATTTTTGATGTAAAGAAAGGGTTTAGAAATAGCAGAGCAGTTAGCAGATATTTTAGGATGTTTGTACATTTCTGAATTTTGCTCACCTGCACATGCAAATACTCTTTGATTTGTTACTTCTTAAAATTGGGAAATTGACAAGGTTTTCCACATGGTACAACACACGGCATGGAGTTTGGGCTGAAACAGCCCGTCATGTATCTAAGAATGTGAGAGCCGCTTTAATATAGAACTTTGGTTGGGTATGTCCGCTAGCTAGCCCTTTCAGTATTTGCGAGTTGCACACTTGTTCTGAATATAGCTCACCTGCACATCCATATACTCCTTTGATTTGTTACTTCTTGAAATTGAGAAATTGACAAGGTTTTCTACATGGTACACATGGCATGAAGTTTGGGCTGACACGGCCCATCACGTGTCTTTAAGAATGTGAACTTCCCTTTAATATAGAACTTTGTCTGGTATGTCTGTTAGCTAGCCCTTTCAGCATTTGCGAGTTGCACAGTTTTGTTCTGAATTCTGCTCACCTGCACATGCAAATATGCTTTGATTAGTTACTTCTTGAAATTGAGAAATTGACAAGGTTTTCCACATGATACACATGACATGAAGTTTTTTAGCTTGTCACTTGTCTAAGAATGTGAATGTGTCTCTTTAATATAGAACTTTGTCTTGTGTATCTGCTAGCTATCCCTTTCAACATTTGTGAGTTGCACACTTCTGTTCTGAATTTTGCTCACCTGCACATGCAAATACTCTTTGATTTGTTACTTCTTGAAATTGAGAAATTGACAAGATTTTTCACATGGTACACATGGCACTAATTTTGGGCTAAAACATCTGGTCATGTTACAAGAATGTGAAATGTCGCTTTAATATAGAACTTTGTCTGGTATGTCTGCTAGCTAGCCCTTTCAGCATTTGCATGTTGCACACTTCTGTTCTAAATTTCGCTCACCTGCACATGCAAATACTGGTTGATTTGTTACTTCTTGAAATTTAGAAATTTACAAGGTTTTCACATGGTACATATTTCATGAAGTATGGGCTGATACAGCCCGTCATGTGTCTAAGAATGTGAACGTCCCTTTAGTATAGAACTTTATCTGGTATGTCTGCTAGTTAGCCCTCCCCCATTTTCCTTCTTGAATGCCTCTCCTCATCCTAAAATGGAGACAAGAACACCAACTTGAATTTTCTTTACTTTAGTAGTCTTTTTTTTTCTTCATCTTGTTTGTGTTCATCTCTTGCTTGTTGCTCTTTTTGATAAGGTAATGTTTTAATTAATGATTGGAGAAATCCCATATACAAGCCATACACCAAAAAATAAAGAATGTAAACCAAAATATTGTTCTCTACGAAAGGAAAACCAATCATCTATAAAACAGGCACCTTATGGGTGGTGTCATCTTATTTGTATTCACGTCTTTGCTTGTTGCTTATGTAGTTTATACAATTGTTGTTTATGTTTTGATGCATCATTTCACTTCTTGTGGCTCTAATGATGCACTTGATTATATTGAACTAACAGGTTGGAGCAAAAGATCACCAGCGTTTCCAAGCATCTTATGCAATTTTGCTGAAGGCCCGGTTGACTGCACTAAAGAAGAGGGAGAGGAAGGACAAGAGGAAGGCTACTGATTCTGACAAAAAGATGGATATTTCGAAAAAGAAATCTGCTGCTGCTAAAGCCTCTACATGAAACTTTAGTCCTTTGGTTTATTCCCCCATTTTGTTTCTAGGATAGAGTTGTAGGATTTGAACCCCATCCATTTGGGGCGACAAGTCTGAAACTTCATTACAACTCCACTGCATAGAATGAAGAAAGGAGGTGTTTTTACTCAATTTGATTATTCACATCTAAATTAGTCAAACTTTTTAAAGAGCTTGTTGGGTTATGGAACAGTTGAAGGAATTTTGTCATAATCTTGATCTTTTAATTCCTTGAACAACAGCTTTGGCAATTGAAAGTAGATGGGACCAAATTAAAAGTAGTATGCCTACATACTTGAATGTCATGTCAACTGCATATGTCCATACTTTTTGGTTGTGGGAACTTAAAATGACATTTTTTTGCTTCTTTTTGTTCAACCAGTTCTTTTTCCACTGTTCCAAAACCAT</genome_strand>
        <mrna_strand>CTTCTCTTCATCGCTGTGTTGAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGATTACAGCCAGACCCATTCCTCAATGAACTGACGAGTATGTTTGAGCGAACTACTGAGCATGGTTCCGTTTGGGTTACGCTTAAACACT............................................................................................CTTCTGATAAATCTAAAGCCCAACGGAATAAGATGAAGACAGCTGGTGAAACTCTTGAATTTAAGTGCCTCATCCGAGCAACTGATGGGAAAAAGAATATTTCCACAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262988" ref_strand="+" ref_description="SGN-E262988 [cLEG-59-O15]">
      <seq>gaagttttggtttttgagttttgagatttgctgttcgaagatggtgcgattacagccagacccattcctcaatgaactgacgagtatgtttgagcgaactactgagcatggttccgtttgggttacgcttaaacactcttctgataaatctaaagcccaacggaataagatgaagacagctggtgaaactcttgaatttaagtgcctcatccgagcaactgatgggaaaaagaatatttccacaatggttggagcaaaagatcaccagcgtttccaagcatcttatgcaattttgctgaaggcccggttgactgcactaaagaagagggagaggaaggacaagaggaaggctactgattctgacaaaaagatggatatttcgaaaaagaaatctgctgctgctaaagcctctacatgaaactttagtcctttggtttattcccccattttgtttctaggatagagttgtaggatttgaaccccatccatttggggcgacaagtctgaaacttcattacaactccactgcatagaatgaagaaaggaggtgtttttactcaatttgattattcacatctaaattagtcaaactttttaaagagcttgttgggttatggaacagttgaaggaattttgtcataatcttgatcttttaattccttgaacaacagctttggcaattgaaagtagatgggaccaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="-" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103522" stop="93996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103222" g_stop="103180" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103179" i_stop="102415" i_length="765">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102414" g_stop="102321" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="137" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102320" i_stop="102229" i_length="92">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102228" g_stop="102119" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="247" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102118" i_stop="94751" i_length="7368">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94750" g_stop="94296" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="702" r_length="455" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="-" ref_id="SGN-E262988" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103222" e_stop="103180"/>
          <exon e_start="102414" e_stop="102321"/>
          <exon e_start="102228" e_stop="102119"/>
          <exon e_start="94750" e_stop="94296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATGGTAAGCGCTAACTTCAACTCATCAAAATCAATTGATCGCAATACTCTTTCGAATCAAATCTGGAAATCAAACAATGTAGAATTTTTTGATGTTAATTTTTCTTTGTTTACGCCGTTTTCAGCTTTATTTGATCTATATTTCCTTTTTGAGATTATGGGTTTCTGTAGAGTATAAATTCATGTTAGATTCTTTGTGTTCTTGAGTTGTTATGTATGTATCCCGAATCTCACTATATTGAATTGTGGAAATTAGTTAATACCAGTTTAAAATGGTGCTTATCGATTGAATTAACTAATTGGGGGTTGAGGTGATGGAAAACTTTCCCACTTAGCATTATACTCGAGTGCTGATGAATTTGATGTGTAGGTTAGAAAATTTGTTGAATCTGATGTTTTTACTTCATCCTTTAACTGGATAAAGGAGGAGGATTACATGGGTTGGGTTGATAGCCAGCGTAGAAATAAGCGAAATTACAGGAATCTTCTAAGTCTACACACTGGTTTCATCCTTGCTTTCTCTCCTGAGCACACACTCAAGCTACCCAACTACTGTATTTCTTCCTCCTTTATTCAGGTGGCACTGGTGAAGCATGCTCACATTGTTTATGTTAAGTAATCACATTGTGGAGTTCAATGTGCTTCCTATTTGTGGATACAAAATTATATGGCATTTTGCTTATTTTTGGGAAGTTTGAAAGAAGTGGCTTTGTCCATCTTTTTGGTAGAACATAAGTTGACAATTACTGATCTGAATTGGATTTGTCAGGTGCGATTACAGCCAGACCCATTCCTCAATGAACTGACGAGTATGTTTGAGCGAACTACTGAGCATGGTTCCGTTTGGGTTACGCTTAAACACTGTGAGTTTGCCTCTTCGTTGGTTTTCCTGTGTTTTGTGCTTTGTATTCTCTTTATGAGTAATACTGATTGAGCAATCTTGTCCTTTGTATAGCTTCTGATAAATCTAAAGCCCAACGGAATAAGATGAAGACAGCTGGTGAAACTCTTGAATTTAAGTGCCTCATCCGAGCAACTGATGGGAAAAAGAATATTTCCACAATGGTAATTATCACAATAGAAAGTCTCTTACCTTTTTCCATCACCTTCTTTTTGCAAGTCTTGTCGTTTTCCCCATTTTTTTGCTTTGTTGGGCACTATGTTCTCTGGAACATTGAGGGTGTTAGTTTGTTGTATGAATTATTTTTTAGCATAAGTTTAAATGTGCAAATATAGATAATTCTAGGTCCTGGCCTGTATGTTTGAGATTGAGAGCATCAAATTCAAAAAAAGGATGGTAGCCTTGTGGTGCATAGAGAATGGGAGTCGTGGTCCTTGTTTACTTGATTGATAACTAATAGGTATCGTACATGCTTGTAATACAATATTAGAGCACATAAAGGGACAATTTCTCATAAAAGGCAAACAAATTATGGATGCAACTCTTTTAGTCAGTGAACCTGTGGATTCTAGACTCGAAGGTGAAGATCCAGGGATCATGTGAAACCTAGCTATAGAGAACCCATTATGATCATGTCAACTGGGAGTTACTTCTCAACCTTCTTTAAAAAATGGGTTTTGGTGGAAGATGGTTAAAGTGGATGGTTTTTGTATCAATACTGTCCTGAATTCTAGTCATAGGAGAAATTGCTGGAATTTTCCCTCAGAGAAAGAGGACTCGGGGAGACCCCCCTCTCTTTGCCTTTTCATATTAGCTATGGAAGGTTTCAGTAGTATGATGAGAGGTACTATTCAGAACAGTGGATAAAAGGTTTCAGGATAGGCAATCAAGCAGGGGAAGAGATGTAGATTTCCTTTCATTATTGCTGATGATATAGTTGTTTTCTAAGATGCTAAAGCAGATCAGATCATGTACATCAGAATGATTTTGGTGATCTTTGGGCAATTTTTGGTCCATTTGTAAAATTGGAGGAAAGGTAGTAGTTTCCCTGTCAAAGAAGTTCCACAAATTCAATGCCTGTCCATGTTATAAGTTTCGATGATTTAACAAACTATGACATCTAGTTGGGGACCTGATCCCATGAGGGACTGAGAGTTTCAGGCAATGTGCAAAGGACAGTTGTAAAGCTGCAACTGCTGCCACAATTGCAGTGGTTGGTGCACCTTTTCAGAGGAATAGTACTCAGCCAATGGCGTTGCACTAGGTAGTTTGTCCATCTTATAATAGTCATCTTGTCAAGGGACGTTTCCTAATTTTTGAGTTGAAGATTTCCATACGGCAAAATCCACTCTCAAAAAGAAATATTCTCATATGCATCAAGAGATCTGATCGAGTGATCTACTGTTCCCTTTAGTTGTTATTTTAGTTTATCGTCTCGTGTTTATACAGTGTAAGATCTGTTCATATGTTATAAAGGAATCAGATCATTTCAGTTGTAATCGTTGTTAAAAGTTTGAGTTGTAGCTAGAGTTAGCTATGTCGTGTTCTTGAAGTCTACATTAACTTAGCTTGTTGGCGTAGTAGGCAATAGAGGTATTACTTTGTTTATGAGTAACAAAGCTGTTACGAAAGGAGAAGGGATTAAGAGTTCATTTCCTAGGTTGCAAGAGTTTGTAATCGGGATCTTAACTCTTTGAAGTAATGGAATTGGCGAAATCCTGTGAGACAGGTTGTGATTTTCTCCTTCCTTAAGCAAGGGGGTTAACACGTAAACATTTTGTGTTCTTTATTTTAAGTTTTTCTTTCTGCACTGTTCTTACTATGTGAACGGACTTGGTCCATTGACTTGTGGTGGACGCATGTAAGTCATCAGTCCAACATCTTGAGTTGTAAAATTGAGAATTTCCCGACCAACTTACTTGGGGATGCCCCTTGGAAACAATCATAAGGAGCTAGAAGTTTGGGATGAGATTATTGAAAAAATTAGTAACCAAACTCAAAATGTGTTGAGCGCTCGACTTGCTTTATGTGCGCTTCGGTGTCGTCACCAGTGTTCTAAGACATATTTTTCCTTGCCAATGTGTCTCTGCCGAAGAGGTGACACTAAACAATTGATATTTCACTTAATCACATTTTTTTTGAAAAGGTACTTTATCATTATTTTTTTCGATTTCTTCAGTCATATATTTGTTATTTGTGTTTATAATTATTCGTCTTGGACTCAGCATATATATTTGTAATTTTTTCTCCCTTTGTGCCTTTTTTCATTAAAGCCCATTCTTTGTTTGCACATAAAGGTCCAATGGGCCTTAGAGTTTTTTTGCGCTTTTCGCGTTTGATAACACTTGAAAAACTAGCCAATTGGAAAGCCCGATGTTTATCTCTTGGAGGAAGTAGTACTCTTATGAACTCAGTATTGGACTCATTGCCAACACATGTCATGTCCTTATTTCTAATGCCTTCAGGTGGAGGATACCATACAAGTTGAGGACTTTCTATGTTAGGTAATAAGGAGGGCAGAGGTATTCACTAAGTGAAATGCCAAACTGCTCAGCTTATGGTTGACTTGGTATTAGGAATCTGGGGCTTCAAAACAGATGCTTATTGACAAAATGGAGGTTTGTTGGTGAGGATCATGCACTCTGGAAGGAAGTAACTATAAAAATATGGGCAGAGTAACTATTTGTGTTCTAATATGGTCTATGTTGGCTGGGAATATAGACTGTAGTGTGTGGAATGACACCTAGATCCTTTTTCCGAGAGATAAATGGATTGGACTCGAGCCTTTAATGAGCTCATTTTCGGAACTGTTCTCATTTTGTAGCAACTCTGAAGCATCAATAGTTGACACTCTGGGTGTGTTTGTGTCACGACCCAAACCGGGTTGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATGTAATAACAGTAGAAAATAATGCGGAAGACTTAACTCATTAATAAAATCAATTCAATAACTATCAATATTCAACATCTATTATTCCCAAAACCTGGAAGTCATCATCACAAGAACATCTACGATCAAATGACTAAACTAAGAGTATTCTAAAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGTAGTAAGACTGGCTTGAATTACTGTTGAGTTGAAGACGATGGCACGTTTGCTGCACTCCACAAATAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGGGAACAGTATATATCAATATTATCGTAAATCAACTATAAAACTCAACATGTAGCCACAACAAGTATTATAATCATCAATAAGTACCATCAAGTTCATCCATGAGGGCTCAAGCCTCAACACCATACTCATTTGGGAATTATGTTCGTTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTATTCCTCTTGTGTCGGTACGTGACACTCTGATCCCCTATATCTACGTGTCGGTTCGTGACACCCGATCCCCTACATCATTCTGTAAATCATCAGGCCTTCTCTATACCAAGGTATCATCAATCCTATTACTTTAATTCATCAAGCCTTCTTCTATACCAAGGCATCATCATTAATAATGTATATTAAAGTTTCCTTTCAAGATTTGGGATTCAATATTTTCATCATGCTTATCTTATCACAATCACATAATCATATTCACGCAAACATACAATTAAGCTTATAGTAGGGTTTACAATACTACCAATACATATCATTCTCTATTAAGAGTTTACTATGAAAGCATGAAAACCATAACCTACCTCCACCGAAGAGTTGAATCAAGCAAGAATTTTCCCAAAGCTTTGTTTCTCCCTTCTCGTTCGATTTTCTCTCTCTCTCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATACCCCACTAATTAACTTAGGGTTACCTCTTTTAACCCCTCAAGAATTTGAGTTATTAATATAACCCCACGAACTTTATAATTAAGGCAAGAATAGTCAAAAACGTCCCTTAAAACTTAACCAGAAATCCGACTCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAGAGTTCAGAGACCCAAATTTCCACCAAGGGTCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCCTGCCATTCCGTCACAAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCCTCGTGCCCTTGACGGTCCGTCGTGGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAATTGAAGTCTGTTGCTCAAAACGACTAAACGGGTCGTTACAGTTTGGTATGGAGGAAAATGTTTTCCATGGAAAATGTTTTCCTAGAAAATGTTTTCCTGGAAAACAAGTAAATTTTGGACTTATTTTCTCATGTTTGGTTGGTGAGTAGAAAATATTTTCTGGATATGATTTTTAGTGTTTGATTTATGAATGAAAAATGTTTTTGAGAGACATTTTTTATTTTTACTAGAGTAAAAAATAATTTATGATATTGAAAATATTTTTCAAAATCAAAATTATTATTTTTTTGGGTGGTGGTGGGGGTGGGGTGGGGGCAGGGCGGGGGGAGGGGGAGGGGATAGGAGTGAAAAAATAAAAATTTGAATTTGATAGTATTTTTAAAAAACAAAATTAATTTTTTTGGGGATTGGGGTGGGTGGGGGCTGGTAGGGGGGCTGGCCGGGAGTGGGGGGGAGGGGTAGGAGTTAAAAAATAAAAAATTTGAAGTTGAAAATATTTTTAAAAAGCAAAATTAATTTTTTGAGGAGGGGTTGGGGTTGGGGTTGGGGGGGGCTGGCCGGGGGTTAGGGTCAAGGATCTGGTGAAAAAATAAAATTTTGAAATTGAAAATATTTATTTAAATTGATGATTTTCCCAAAAAAAAGTAATTTGAAATTGGAGGTGAGTTATGGAAAATGTTTTCCTTAATTTTTGAAGGGAAGTCATTTTCCTTAATTTTGAGGAAAATGAGTTGATTTGGAAATCATTTTCCGAAACTTTTGTCCCAACCAAACATGTGGAAATTGGAAAACATTTTCCAGAAAATGTTTTCCTTCATACCAAACACACTCTCTGTCCCCTCAAGGTGGAATCTCACATTCAGAAGGCACTTGAATGATTGAGAAGTGGGTAGATTTGTTGAGTTATTACAAGTGCTTAGTGGTTTCTTAGGTTTATCTACAGGATCAGACACAATGAGGTGGGAACATGACAGTGATGACTAGTTCTTATTAAGAAGACTCTAGAGAAATGAAGTGGTGGAGCAACCAGGAAGGAGGGGACATACCAGGTCCTTGGAAACAGATTTGGAAGTGCAGTGTCCCAAACAAGGTGCACTTGGTTGGTGACCTGAAGAGCATGTCTCACTGATGAAAAATTGGAAAGGAGGGGCTTTCAGATGGTATCCAGATGTTTTGTTTTTGGGCTAGGAGAATGAAGAAACTAATAATCATCTTTTCTTCATTGGAAGATTGTATCACAGATCTGGTCTGTGTTTCCAAGTATATCTCGAGCAAATTGGGTAACGCCTGAACACATTGCTGACCTACTTAGCTGATGCATAAGGAGTGGAGGGAGGGAACAGAGTCAGAAGGGACGGTAAGATAATACCATATTGCATATAGTGGTCAGTATGGAGAGAAGAAACAACAGATGCTTTGAGGATATCTCTAACCCAATCTAGATAATCAAAGAAAATTGTATGAATATTTTGTATTTTTGATGTAAAGAAAGGGTTTAGAAATAGCAGAGCAGTTAGCAGATATTTTAGGATGTTTGTACATTTCTGAATTTTGCTCACCTGCACATGCAAATACTCTTTGATTTGTTACTTCTTAAAATTGGGAAATTGACAAGGTTTTCCACATGGTACAACACACGGCATGGAGTTTGGGCTGAAACAGCCCGTCATGTATCTAAGAATGTGAGAGCCGCTTTAATATAGAACTTTGGTTGGGTATGTCCGCTAGCTAGCCCTTTCAGTATTTGCGAGTTGCACACTTGTTCTGAATATAGCTCACCTGCACATCCATATACTCCTTTGATTTGTTACTTCTTGAAATTGAGAAATTGACAAGGTTTTCTACATGGTACACATGGCATGAAGTTTGGGCTGACACGGCCCATCACGTGTCTTTAAGAATGTGAACTTCCCTTTAATATAGAACTTTGTCTGGTATGTCTGTTAGCTAGCCCTTTCAGCATTTGCGAGTTGCACAGTTTTGTTCTGAATTCTGCTCACCTGCACATGCAAATATGCTTTGATTAGTTACTTCTTGAAATTGAGAAATTGACAAGGTTTTCCACATGATACACATGACATGAAGTTTTTTAGCTTGTCACTTGTCTAAGAATGTGAATGTGTCTCTTTAATATAGAACTTTGTCTTGTGTATCTGCTAGCTATCCCTTTCAACATTTGTGAGTTGCACACTTCTGTTCTGAATTTTGCTCACCTGCACATGCAAATACTCTTTGATTTGTTACTTCTTGAAATTGAGAAATTGACAAGATTTTTCACATGGTACACATGGCACTAATTTTGGGCTAAAACATCTGGTCATGTTACAAGAATGTGAAATGTCGCTTTAATATAGAACTTTGTCTGGTATGTCTGCTAGCTAGCCCTTTCAGCATTTGCATGTTGCACACTTCTGTTCTAAATTTCGCTCACCTGCACATGCAAATACTGGTTGATTTGTTACTTCTTGAAATTTAGAAATTTACAAGGTTTTCACATGGTACATATTTCATGAAGTATGGGCTGATACAGCCCGTCATGTGTCTAAGAATGTGAACGTCCCTTTAGTATAGAACTTTATCTGGTATGTCTGCTAGTTAGCCCTCCCCCATTTTCCTTCTTGAATGCCTCTCCTCATCCTAAAATGGAGACAAGAACACCAACTTGAATTTTCTTTACTTTAGTAGTCTTTTTTTTTCTTCATCTTGTTTGTGTTCATCTCTTGCTTGTTGCTCTTTTTGATAAGGTAATGTTTTAATTAATGATTGGAGAAATCCCATATACAAGCCATACACCAAAAAATAAAGAATGTAAACCAAAATATTGTTCTCTACGAAAGGAAAACCAATCATCTATAAAACAGGCACCTTATGGGTGGTGTCATCTTATTTGTATTCACGTCTTTGCTTGTTGCTTATGTAGTTTATACAATTGTTGTTTATGTTTTGATGCATCATTTCACTTCTTGTGGCTCTAATGATGCACTTGATTATATTGAACTAACAGGTTGGAGCAAAAGATCACCAGCGTTTCCAAGCATCTTATGCAATTTTGCTGAAGGCCCGGTTGACTGCACTAAAGAAGAGGGAGAGGAAGGACAAGAGGAAGGCTACTGATTCTGACAAAAAGATGGATATTTCGAAAAAGAAATCTGCTGCTGCTAAAGCCTCTACATGAAACTTTAGTCCTTTGGTTTATTCCCCCATTTTGTTTCTAGGATAGAGTTGTAGGATTTGAACCCCATCCATTTGGGGCGACAAGTCTGAAACTTCATTACAACTCCACTGCATAGAATGAAGAAAGGAGGTGTTTTTACTCAATTTGATTATTCACATCTAAATTAGTCAAACTTTTTAAAGAGCTTGTTGGGTTATGGAACAGTTGAAGGAATTTTGTCATAATCTTGATCTTTTAATTCCTTGAACAACAGCTTTGGCAATTGAAAGTAGATGGGACCAAAT</genome_strand>
        <mrna_strand>GAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGATTACAGCCAGACCCATTCCTCAATGAACTGACGAGTATGTTTGAGCGAACTACTGAGCATGGTTCCGTTTGGGTTACGCTTAAACACT............................................................................................CTTCTGATAAATCTAAAGCCCAACGGAATAAGATGAAGACAGCTGGTGAAACTCTTGAATTTAAGTGCCTCATCCGAGCAACTGATGGGAAAAAGAATATTTCCACAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGCAAAAGATCACCAGCGTTTCCAAGCATCTTATGCAATTTTGCTGAAGGCCCGGTTGACTGCACTAAAGAAGAGGGAGAGGAAGGACAAGAGGAAGGCTACTGATTCTGACAAAAAGATGGATATTTCGAAAAAGAAATCTGCTGCTGCTAAAGCCTCTACATGAAACTTTAGTCCTTTGGTTTATTCCCCCATTTTGTTTCTAGGATAGAGTTGTAGGATTTGAACCCCATCCATTTGGGGCGACAAGTCTGAAACTTCATTACAACTCCACTGCATAGAATGAAGAAAGGAGGTGTTTTTACTCAATTTGATTATTCACATCTAAATTAGTCAAACTTTTTAAAGAGCTTGTTGGGTTATGGAACAGTTGAAGGAATTTTGTCATAATCTTGATCTTTTAATTCCTTGAACAACAGCTTTGGCAATTGAAAGTAGATGGGACCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747375" ref_strand="+" ref_description="SGN-E747375 [GI|47104587]">
      <seq>tttctttgacccatcgcttctcttcatcgctgtgttgaagttttggtttttgagttttgagatttgctgttcgaagatggtgcgattacagccagacccattcctcaatgaactgacgagtatgtttgagcgaactactgagcatggttccgtttgggttacgcttaaacactcttctgataaatctaaagcccaacggaataagatgaagacagctggtgaaactcttgaatttaagtgcctcatccgagcaactgatgggaaaaagaatatttccacaatggttggagcaaaagatcaccagcgtttccaagcatcttatgcaattttgctgaaggcccggttgactgcactaaagaagagggagaggaaggacaagaggaaggctactgattctgacaaaaagatggatatttcgaaaaagaaatctgctgctgctaaagcctctacatgaaactttagtcctttggtttattcccccattttgtttctaggatagagttgtaggatttgaaccccatccatttggggcgacaagtctgaaacttcattacaactccactgcatagaatgaagaaaggaggtgtttttactcaatttgattattcacatctaaattagtcaaactttttaaagagcttgttgggttatggaacagttgaaggaattttgtcataatcttgatcttttaattccttgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="-" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103558" stop="94028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103258" g_stop="103180" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103179" i_stop="102415" i_length="765">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102414" g_stop="102321" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="173" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102320" i_stop="102229" i_length="92">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102228" g_stop="102119" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="283" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102118" i_stop="94751" i_length="7368">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94750" g_stop="94320" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="714" r_length="431" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="-" ref_id="SGN-E747375" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103258" e_stop="103180"/>
          <exon e_start="102414" e_stop="102321"/>
          <exon e_start="102228" e_stop="102119"/>
          <exon e_start="94750" e_stop="94320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTGACCCATCGCTTCTCTTCATCGCTGTGTTGAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATGGTAAGCGCTAACTTCAACTCATCAAAATCAATTGATCGCAATACTCTTTCGAATCAAATCTGGAAATCAAACAATGTAGAATTTTTTGATGTTAATTTTTCTTTGTTTACGCCGTTTTCAGCTTTATTTGATCTATATTTCCTTTTTGAGATTATGGGTTTCTGTAGAGTATAAATTCATGTTAGATTCTTTGTGTTCTTGAGTTGTTATGTATGTATCCCGAATCTCACTATATTGAATTGTGGAAATTAGTTAATACCAGTTTAAAATGGTGCTTATCGATTGAATTAACTAATTGGGGGTTGAGGTGATGGAAAACTTTCCCACTTAGCATTATACTCGAGTGCTGATGAATTTGATGTGTAGGTTAGAAAATTTGTTGAATCTGATGTTTTTACTTCATCCTTTAACTGGATAAAGGAGGAGGATTACATGGGTTGGGTTGATAGCCAGCGTAGAAATAAGCGAAATTACAGGAATCTTCTAAGTCTACACACTGGTTTCATCCTTGCTTTCTCTCCTGAGCACACACTCAAGCTACCCAACTACTGTATTTCTTCCTCCTTTATTCAGGTGGCACTGGTGAAGCATGCTCACATTGTTTATGTTAAGTAATCACATTGTGGAGTTCAATGTGCTTCCTATTTGTGGATACAAAATTATATGGCATTTTGCTTATTTTTGGGAAGTTTGAAAGAAGTGGCTTTGTCCATCTTTTTGGTAGAACATAAGTTGACAATTACTGATCTGAATTGGATTTGTCAGGTGCGATTACAGCCAGACCCATTCCTCAATGAACTGACGAGTATGTTTGAGCGAACTACTGAGCATGGTTCCGTTTGGGTTACGCTTAAACACTGTGAGTTTGCCTCTTCGTTGGTTTTCCTGTGTTTTGTGCTTTGTATTCTCTTTATGAGTAATACTGATTGAGCAATCTTGTCCTTTGTATAGCTTCTGATAAATCTAAAGCCCAACGGAATAAGATGAAGACAGCTGGTGAAACTCTTGAATTTAAGTGCCTCATCCGAGCAACTGATGGGAAAAAGAATATTTCCACAATGGTAATTATCACAATAGAAAGTCTCTTACCTTTTTCCATCACCTTCTTTTTGCAAGTCTTGTCGTTTTCCCCATTTTTTTGCTTTGTTGGGCACTATGTTCTCTGGAACATTGAGGGTGTTAGTTTGTTGTATGAATTATTTTTTAGCATAAGTTTAAATGTGCAAATATAGATAATTCTAGGTCCTGGCCTGTATGTTTGAGATTGAGAGCATCAAATTCAAAAAAAGGATGGTAGCCTTGTGGTGCATAGAGAATGGGAGTCGTGGTCCTTGTTTACTTGATTGATAACTAATAGGTATCGTACATGCTTGTAATACAATATTAGAGCACATAAAGGGACAATTTCTCATAAAAGGCAAACAAATTATGGATGCAACTCTTTTAGTCAGTGAACCTGTGGATTCTAGACTCGAAGGTGAAGATCCAGGGATCATGTGAAACCTAGCTATAGAGAACCCATTATGATCATGTCAACTGGGAGTTACTTCTCAACCTTCTTTAAAAAATGGGTTTTGGTGGAAGATGGTTAAAGTGGATGGTTTTTGTATCAATACTGTCCTGAATTCTAGTCATAGGAGAAATTGCTGGAATTTTCCCTCAGAGAAAGAGGACTCGGGGAGACCCCCCTCTCTTTGCCTTTTCATATTAGCTATGGAAGGTTTCAGTAGTATGATGAGAGGTACTATTCAGAACAGTGGATAAAAGGTTTCAGGATAGGCAATCAAGCAGGGGAAGAGATGTAGATTTCCTTTCATTATTGCTGATGATATAGTTGTTTTCTAAGATGCTAAAGCAGATCAGATCATGTACATCAGAATGATTTTGGTGATCTTTGGGCAATTTTTGGTCCATTTGTAAAATTGGAGGAAAGGTAGTAGTTTCCCTGTCAAAGAAGTTCCACAAATTCAATGCCTGTCCATGTTATAAGTTTCGATGATTTAACAAACTATGACATCTAGTTGGGGACCTGATCCCATGAGGGACTGAGAGTTTCAGGCAATGTGCAAAGGACAGTTGTAAAGCTGCAACTGCTGCCACAATTGCAGTGGTTGGTGCACCTTTTCAGAGGAATAGTACTCAGCCAATGGCGTTGCACTAGGTAGTTTGTCCATCTTATAATAGTCATCTTGTCAAGGGACGTTTCCTAATTTTTGAGTTGAAGATTTCCATACGGCAAAATCCACTCTCAAAAAGAAATATTCTCATATGCATCAAGAGATCTGATCGAGTGATCTACTGTTCCCTTTAGTTGTTATTTTAGTTTATCGTCTCGTGTTTATACAGTGTAAGATCTGTTCATATGTTATAAAGGAATCAGATCATTTCAGTTGTAATCGTTGTTAAAAGTTTGAGTTGTAGCTAGAGTTAGCTATGTCGTGTTCTTGAAGTCTACATTAACTTAGCTTGTTGGCGTAGTAGGCAATAGAGGTATTACTTTGTTTATGAGTAACAAAGCTGTTACGAAAGGAGAAGGGATTAAGAGTTCATTTCCTAGGTTGCAAGAGTTTGTAATCGGGATCTTAACTCTTTGAAGTAATGGAATTGGCGAAATCCTGTGAGACAGGTTGTGATTTTCTCCTTCCTTAAGCAAGGGGGTTAACACGTAAACATTTTGTGTTCTTTATTTTAAGTTTTTCTTTCTGCACTGTTCTTACTATGTGAACGGACTTGGTCCATTGACTTGTGGTGGACGCATGTAAGTCATCAGTCCAACATCTTGAGTTGTAAAATTGAGAATTTCCCGACCAACTTACTTGGGGATGCCCCTTGGAAACAATCATAAGGAGCTAGAAGTTTGGGATGAGATTATTGAAAAAATTAGTAACCAAACTCAAAATGTGTTGAGCGCTCGACTTGCTTTATGTGCGCTTCGGTGTCGTCACCAGTGTTCTAAGACATATTTTTCCTTGCCAATGTGTCTCTGCCGAAGAGGTGACACTAAACAATTGATATTTCACTTAATCACATTTTTTTTGAAAAGGTACTTTATCATTATTTTTTTCGATTTCTTCAGTCATATATTTGTTATTTGTGTTTATAATTATTCGTCTTGGACTCAGCATATATATTTGTAATTTTTTCTCCCTTTGTGCCTTTTTTCATTAAAGCCCATTCTTTGTTTGCACATAAAGGTCCAATGGGCCTTAGAGTTTTTTTGCGCTTTTCGCGTTTGATAACACTTGAAAAACTAGCCAATTGGAAAGCCCGATGTTTATCTCTTGGAGGAAGTAGTACTCTTATGAACTCAGTATTGGACTCATTGCCAACACATGTCATGTCCTTATTTCTAATGCCTTCAGGTGGAGGATACCATACAAGTTGAGGACTTTCTATGTTAGGTAATAAGGAGGGCAGAGGTATTCACTAAGTGAAATGCCAAACTGCTCAGCTTATGGTTGACTTGGTATTAGGAATCTGGGGCTTCAAAACAGATGCTTATTGACAAAATGGAGGTTTGTTGGTGAGGATCATGCACTCTGGAAGGAAGTAACTATAAAAATATGGGCAGAGTAACTATTTGTGTTCTAATATGGTCTATGTTGGCTGGGAATATAGACTGTAGTGTGTGGAATGACACCTAGATCCTTTTTCCGAGAGATAAATGGATTGGACTCGAGCCTTTAATGAGCTCATTTTCGGAACTGTTCTCATTTTGTAGCAACTCTGAAGCATCAATAGTTGACACTCTGGGTGTGTTTGTGTCACGACCCAAACCGGGTTGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATGTAATAACAGTAGAAAATAATGCGGAAGACTTAACTCATTAATAAAATCAATTCAATAACTATCAATATTCAACATCTATTATTCCCAAAACCTGGAAGTCATCATCACAAGAACATCTACGATCAAATGACTAAACTAAGAGTATTCTAAAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGTAGTAAGACTGGCTTGAATTACTGTTGAGTTGAAGACGATGGCACGTTTGCTGCACTCCACAAATAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGGGAACAGTATATATCAATATTATCGTAAATCAACTATAAAACTCAACATGTAGCCACAACAAGTATTATAATCATCAATAAGTACCATCAAGTTCATCCATGAGGGCTCAAGCCTCAACACCATACTCATTTGGGAATTATGTTCGTTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTATTCCTCTTGTGTCGGTACGTGACACTCTGATCCCCTATATCTACGTGTCGGTTCGTGACACCCGATCCCCTACATCATTCTGTAAATCATCAGGCCTTCTCTATACCAAGGTATCATCAATCCTATTACTTTAATTCATCAAGCCTTCTTCTATACCAAGGCATCATCATTAATAATGTATATTAAAGTTTCCTTTCAAGATTTGGGATTCAATATTTTCATCATGCTTATCTTATCACAATCACATAATCATATTCACGCAAACATACAATTAAGCTTATAGTAGGGTTTACAATACTACCAATACATATCATTCTCTATTAAGAGTTTACTATGAAAGCATGAAAACCATAACCTACCTCCACCGAAGAGTTGAATCAAGCAAGAATTTTCCCAAAGCTTTGTTTCTCCCTTCTCGTTCGATTTTCTCTCTCTCTCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATACCCCACTAATTAACTTAGGGTTACCTCTTTTAACCCCTCAAGAATTTGAGTTATTAATATAACCCCACGAACTTTATAATTAAGGCAAGAATAGTCAAAAACGTCCCTTAAAACTTAACCAGAAATCCGACTCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAGAGTTCAGAGACCCAAATTTCCACCAAGGGTCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCCTGCCATTCCGTCACAAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCCTCGTGCCCTTGACGGTCCGTCGTGGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAATTGAAGTCTGTTGCTCAAAACGACTAAACGGGTCGTTACAGTTTGGTATGGAGGAAAATGTTTTCCATGGAAAATGTTTTCCTAGAAAATGTTTTCCTGGAAAACAAGTAAATTTTGGACTTATTTTCTCATGTTTGGTTGGTGAGTAGAAAATATTTTCTGGATATGATTTTTAGTGTTTGATTTATGAATGAAAAATGTTTTTGAGAGACATTTTTTATTTTTACTAGAGTAAAAAATAATTTATGATATTGAAAATATTTTTCAAAATCAAAATTATTATTTTTTTGGGTGGTGGTGGGGGTGGGGTGGGGGCAGGGCGGGGGGAGGGGGAGGGGATAGGAGTGAAAAAATAAAAATTTGAATTTGATAGTATTTTTAAAAAACAAAATTAATTTTTTTGGGGATTGGGGTGGGTGGGGGCTGGTAGGGGGGCTGGCCGGGAGTGGGGGGGAGGGGTAGGAGTTAAAAAATAAAAAATTTGAAGTTGAAAATATTTTTAAAAAGCAAAATTAATTTTTTGAGGAGGGGTTGGGGTTGGGGTTGGGGGGGGCTGGCCGGGGGTTAGGGTCAAGGATCTGGTGAAAAAATAAAATTTTGAAATTGAAAATATTTATTTAAATTGATGATTTTCCCAAAAAAAAGTAATTTGAAATTGGAGGTGAGTTATGGAAAATGTTTTCCTTAATTTTTGAAGGGAAGTCATTTTCCTTAATTTTGAGGAAAATGAGTTGATTTGGAAATCATTTTCCGAAACTTTTGTCCCAACCAAACATGTGGAAATTGGAAAACATTTTCCAGAAAATGTTTTCCTTCATACCAAACACACTCTCTGTCCCCTCAAGGTGGAATCTCACATTCAGAAGGCACTTGAATGATTGAGAAGTGGGTAGATTTGTTGAGTTATTACAAGTGCTTAGTGGTTTCTTAGGTTTATCTACAGGATCAGACACAATGAGGTGGGAACATGACAGTGATGACTAGTTCTTATTAAGAAGACTCTAGAGAAATGAAGTGGTGGAGCAACCAGGAAGGAGGGGACATACCAGGTCCTTGGAAACAGATTTGGAAGTGCAGTGTCCCAAACAAGGTGCACTTGGTTGGTGACCTGAAGAGCATGTCTCACTGATGAAAAATTGGAAAGGAGGGGCTTTCAGATGGTATCCAGATGTTTTGTTTTTGGGCTAGGAGAATGAAGAAACTAATAATCATCTTTTCTTCATTGGAAGATTGTATCACAGATCTGGTCTGTGTTTCCAAGTATATCTCGAGCAAATTGGGTAACGCCTGAACACATTGCTGACCTACTTAGCTGATGCATAAGGAGTGGAGGGAGGGAACAGAGTCAGAAGGGACGGTAAGATAATACCATATTGCATATAGTGGTCAGTATGGAGAGAAGAAACAACAGATGCTTTGAGGATATCTCTAACCCAATCTAGATAATCAAAGAAAATTGTATGAATATTTTGTATTTTTGATGTAAAGAAAGGGTTTAGAAATAGCAGAGCAGTTAGCAGATATTTTAGGATGTTTGTACATTTCTGAATTTTGCTCACCTGCACATGCAAATACTCTTTGATTTGTTACTTCTTAAAATTGGGAAATTGACAAGGTTTTCCACATGGTACAACACACGGCATGGAGTTTGGGCTGAAACAGCCCGTCATGTATCTAAGAATGTGAGAGCCGCTTTAATATAGAACTTTGGTTGGGTATGTCCGCTAGCTAGCCCTTTCAGTATTTGCGAGTTGCACACTTGTTCTGAATATAGCTCACCTGCACATCCATATACTCCTTTGATTTGTTACTTCTTGAAATTGAGAAATTGACAAGGTTTTCTACATGGTACACATGGCATGAAGTTTGGGCTGACACGGCCCATCACGTGTCTTTAAGAATGTGAACTTCCCTTTAATATAGAACTTTGTCTGGTATGTCTGTTAGCTAGCCCTTTCAGCATTTGCGAGTTGCACAGTTTTGTTCTGAATTCTGCTCACCTGCACATGCAAATATGCTTTGATTAGTTACTTCTTGAAATTGAGAAATTGACAAGGTTTTCCACATGATACACATGACATGAAGTTTTTTAGCTTGTCACTTGTCTAAGAATGTGAATGTGTCTCTTTAATATAGAACTTTGTCTTGTGTATCTGCTAGCTATCCCTTTCAACATTTGTGAGTTGCACACTTCTGTTCTGAATTTTGCTCACCTGCACATGCAAATACTCTTTGATTTGTTACTTCTTGAAATTGAGAAATTGACAAGATTTTTCACATGGTACACATGGCACTAATTTTGGGCTAAAACATCTGGTCATGTTACAAGAATGTGAAATGTCGCTTTAATATAGAACTTTGTCTGGTATGTCTGCTAGCTAGCCCTTTCAGCATTTGCATGTTGCACACTTCTGTTCTAAATTTCGCTCACCTGCACATGCAAATACTGGTTGATTTGTTACTTCTTGAAATTTAGAAATTTACAAGGTTTTCACATGGTACATATTTCATGAAGTATGGGCTGATACAGCCCGTCATGTGTCTAAGAATGTGAACGTCCCTTTAGTATAGAACTTTATCTGGTATGTCTGCTAGTTAGCCCTCCCCCATTTTCCTTCTTGAATGCCTCTCCTCATCCTAAAATGGAGACAAGAACACCAACTTGAATTTTCTTTACTTTAGTAGTCTTTTTTTTTCTTCATCTTGTTTGTGTTCATCTCTTGCTTGTTGCTCTTTTTGATAAGGTAATGTTTTAATTAATGATTGGAGAAATCCCATATACAAGCCATACACCAAAAAATAAAGAATGTAAACCAAAATATTGTTCTCTACGAAAGGAAAACCAATCATCTATAAAACAGGCACCTTATGGGTGGTGTCATCTTATTTGTATTCACGTCTTTGCTTGTTGCTTATGTAGTTTATACAATTGTTGTTTATGTTTTGATGCATCATTTCACTTCTTGTGGCTCTAATGATGCACTTGATTATATTGAACTAACAGGTTGGAGCAAAAGATCACCAGCGTTTCCAAGCATCTTATGCAATTTTGCTGAAGGCCCGGTTGACTGCACTAAAGAAGAGGGAGAGGAAGGACAAGAGGAAGGCTACTGATTCTGACAAAAAGATGGATATTTCGAAAAAGAAATCTGCTGCTGCTAAAGCCTCTACATGAAACTTTAGTCCTTTGGTTTATTCCCCCATTTTGTTTCTAGGATAGAGTTGTAGGATTTGAACCCCATCCATTTGGGGCGACAAGTCTGAAACTTCATTACAACTCCACTGCATAGAATGAAGAAAGGAGGTGTTTTTACTCAATTTGATTATTCACATCTAAATTAGTCAAACTTTTTAAAGAGCTTGTTGGGTTATGGAACAGTTGAAGGAATTTTGTCATAATCTTGATCTTTTAATTCCTTGAACAACAGCTTTGGC</genome_strand>
        <mrna_strand>TTTCTTTGACCCATCGCTTCTCTTCATCGCTGTGTTGAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGATTACAGCCAGACCCATTCCTCAATGAACTGACGAGTATGTTTGAGCGAACTACTGAGCATGGTTCCGTTTGGGTTACGCTTAAACACT............................................................................................CTTCTGATAAATCTAAAGCCCAACGGAATAAGATGAAGACAGCTGGTGAAACTCTTGAATTTAAGTGCCTCATCCGAGCAACTGATGGGAAAAAGAATATTTCCACAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704742" ref_strand="+" ref_description="SGN-E704742 [FA25AE09]">
      <seq>ctcttcatcgctgtgttgaagttttggtttttgagttttgagatttgctgttcgaagatggtgcgattacagccagacccattcctcaatgaactgacgagtatgtttgagcgaactactgagcatggttccgtttgggttacgcttaaacactcttctgataaatctaaagcccaacggaataagatgaagacagctggtgaaactcttgaatttaagtgcctcatccgagcaactgatgggaaaaagaatatttccacaatggttggagcaaaagatcaccagcgtttccaagcatcttatgcaattttgctgaaggcccggttgactgcactaaagaagagggagaggaaggacaagaggaaggctactgattctgacaaaaagatggatatttcgaaaaagaaatctgctgctgctaaagcctctacatgaaactttagtcctttggtttattcccccattttgtttctaggatagagttgtaggatttgaaccccatccatttggggcgacaagtctgaaacttcattacaactccactgcatagaatgaagaaaggaggtgtttttactcaatttgattattcacatctaaattagtcaaactttttaaagagcttgttgggttatggaacagttgaaggaattttgtcataatcttgatcttttaattcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="-" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103539" stop="94036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103239" g_stop="103180" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103179" i_stop="102415" i_length="765">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102414" g_stop="102321" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="154" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102320" i_stop="102229" i_length="92">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102228" g_stop="102119" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="264" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102118" i_stop="94751" i_length="7368">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94750" g_stop="94336" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="679" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="-" ref_id="SGN-E704742" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103239" e_stop="103180"/>
          <exon e_start="102414" e_stop="102321"/>
          <exon e_start="102228" e_stop="102119"/>
          <exon e_start="94750" e_stop="94336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCATCGCTGTGTTGAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATGGTAAGCGCTAACTTCAACTCATCAAAATCAATTGATCGCAATACTCTTTCGAATCAAATCTGGAAATCAAACAATGTAGAATTTTTTGATGTTAATTTTTCTTTGTTTACGCCGTTTTCAGCTTTATTTGATCTATATTTCCTTTTTGAGATTATGGGTTTCTGTAGAGTATAAATTCATGTTAGATTCTTTGTGTTCTTGAGTTGTTATGTATGTATCCCGAATCTCACTATATTGAATTGTGGAAATTAGTTAATACCAGTTTAAAATGGTGCTTATCGATTGAATTAACTAATTGGGGGTTGAGGTGATGGAAAACTTTCCCACTTAGCATTATACTCGAGTGCTGATGAATTTGATGTGTAGGTTAGAAAATTTGTTGAATCTGATGTTTTTACTTCATCCTTTAACTGGATAAAGGAGGAGGATTACATGGGTTGGGTTGATAGCCAGCGTAGAAATAAGCGAAATTACAGGAATCTTCTAAGTCTACACACTGGTTTCATCCTTGCTTTCTCTCCTGAGCACACACTCAAGCTACCCAACTACTGTATTTCTTCCTCCTTTATTCAGGTGGCACTGGTGAAGCATGCTCACATTGTTTATGTTAAGTAATCACATTGTGGAGTTCAATGTGCTTCCTATTTGTGGATACAAAATTATATGGCATTTTGCTTATTTTTGGGAAGTTTGAAAGAAGTGGCTTTGTCCATCTTTTTGGTAGAACATAAGTTGACAATTACTGATCTGAATTGGATTTGTCAGGTGCGATTACAGCCAGACCCATTCCTCAATGAACTGACGAGTATGTTTGAGCGAACTACTGAGCATGGTTCCGTTTGGGTTACGCTTAAACACTGTGAGTTTGCCTCTTCGTTGGTTTTCCTGTGTTTTGTGCTTTGTATTCTCTTTATGAGTAATACTGATTGAGCAATCTTGTCCTTTGTATAGCTTCTGATAAATCTAAAGCCCAACGGAATAAGATGAAGACAGCTGGTGAAACTCTTGAATTTAAGTGCCTCATCCGAGCAACTGATGGGAAAAAGAATATTTCCACAATGGTAATTATCACAATAGAAAGTCTCTTACCTTTTTCCATCACCTTCTTTTTGCAAGTCTTGTCGTTTTCCCCATTTTTTTGCTTTGTTGGGCACTATGTTCTCTGGAACATTGAGGGTGTTAGTTTGTTGTATGAATTATTTTTTAGCATAAGTTTAAATGTGCAAATATAGATAATTCTAGGTCCTGGCCTGTATGTTTGAGATTGAGAGCATCAAATTCAAAAAAAGGATGGTAGCCTTGTGGTGCATAGAGAATGGGAGTCGTGGTCCTTGTTTACTTGATTGATAACTAATAGGTATCGTACATGCTTGTAATACAATATTAGAGCACATAAAGGGACAATTTCTCATAAAAGGCAAACAAATTATGGATGCAACTCTTTTAGTCAGTGAACCTGTGGATTCTAGACTCGAAGGTGAAGATCCAGGGATCATGTGAAACCTAGCTATAGAGAACCCATTATGATCATGTCAACTGGGAGTTACTTCTCAACCTTCTTTAAAAAATGGGTTTTGGTGGAAGATGGTTAAAGTGGATGGTTTTTGTATCAATACTGTCCTGAATTCTAGTCATAGGAGAAATTGCTGGAATTTTCCCTCAGAGAAAGAGGACTCGGGGAGACCCCCCTCTCTTTGCCTTTTCATATTAGCTATGGAAGGTTTCAGTAGTATGATGAGAGGTACTATTCAGAACAGTGGATAAAAGGTTTCAGGATAGGCAATCAAGCAGGGGAAGAGATGTAGATTTCCTTTCATTATTGCTGATGATATAGTTGTTTTCTAAGATGCTAAAGCAGATCAGATCATGTACATCAGAATGATTTTGGTGATCTTTGGGCAATTTTTGGTCCATTTGTAAAATTGGAGGAAAGGTAGTAGTTTCCCTGTCAAAGAAGTTCCACAAATTCAATGCCTGTCCATGTTATAAGTTTCGATGATTTAACAAACTATGACATCTAGTTGGGGACCTGATCCCATGAGGGACTGAGAGTTTCAGGCAATGTGCAAAGGACAGTTGTAAAGCTGCAACTGCTGCCACAATTGCAGTGGTTGGTGCACCTTTTCAGAGGAATAGTACTCAGCCAATGGCGTTGCACTAGGTAGTTTGTCCATCTTATAATAGTCATCTTGTCAAGGGACGTTTCCTAATTTTTGAGTTGAAGATTTCCATACGGCAAAATCCACTCTCAAAAAGAAATATTCTCATATGCATCAAGAGATCTGATCGAGTGATCTACTGTTCCCTTTAGTTGTTATTTTAGTTTATCGTCTCGTGTTTATACAGTGTAAGATCTGTTCATATGTTATAAAGGAATCAGATCATTTCAGTTGTAATCGTTGTTAAAAGTTTGAGTTGTAGCTAGAGTTAGCTATGTCGTGTTCTTGAAGTCTACATTAACTTAGCTTGTTGGCGTAGTAGGCAATAGAGGTATTACTTTGTTTATGAGTAACAAAGCTGTTACGAAAGGAGAAGGGATTAAGAGTTCATTTCCTAGGTTGCAAGAGTTTGTAATCGGGATCTTAACTCTTTGAAGTAATGGAATTGGCGAAATCCTGTGAGACAGGTTGTGATTTTCTCCTTCCTTAAGCAAGGGGGTTAACACGTAAACATTTTGTGTTCTTTATTTTAAGTTTTTCTTTCTGCACTGTTCTTACTATGTGAACGGACTTGGTCCATTGACTTGTGGTGGACGCATGTAAGTCATCAGTCCAACATCTTGAGTTGTAAAATTGAGAATTTCCCGACCAACTTACTTGGGGATGCCCCTTGGAAACAATCATAAGGAGCTAGAAGTTTGGGATGAGATTATTGAAAAAATTAGTAACCAAACTCAAAATGTGTTGAGCGCTCGACTTGCTTTATGTGCGCTTCGGTGTCGTCACCAGTGTTCTAAGACATATTTTTCCTTGCCAATGTGTCTCTGCCGAAGAGGTGACACTAAACAATTGATATTTCACTTAATCACATTTTTTTTGAAAAGGTACTTTATCATTATTTTTTTCGATTTCTTCAGTCATATATTTGTTATTTGTGTTTATAATTATTCGTCTTGGACTCAGCATATATATTTGTAATTTTTTCTCCCTTTGTGCCTTTTTTCATTAAAGCCCATTCTTTGTTTGCACATAAAGGTCCAATGGGCCTTAGAGTTTTTTTGCGCTTTTCGCGTTTGATAACACTTGAAAAACTAGCCAATTGGAAAGCCCGATGTTTATCTCTTGGAGGAAGTAGTACTCTTATGAACTCAGTATTGGACTCATTGCCAACACATGTCATGTCCTTATTTCTAATGCCTTCAGGTGGAGGATACCATACAAGTTGAGGACTTTCTATGTTAGGTAATAAGGAGGGCAGAGGTATTCACTAAGTGAAATGCCAAACTGCTCAGCTTATGGTTGACTTGGTATTAGGAATCTGGGGCTTCAAAACAGATGCTTATTGACAAAATGGAGGTTTGTTGGTGAGGATCATGCACTCTGGAAGGAAGTAACTATAAAAATATGGGCAGAGTAACTATTTGTGTTCTAATATGGTCTATGTTGGCTGGGAATATAGACTGTAGTGTGTGGAATGACACCTAGATCCTTTTTCCGAGAGATAAATGGATTGGACTCGAGCCTTTAATGAGCTCATTTTCGGAACTGTTCTCATTTTGTAGCAACTCTGAAGCATCAATAGTTGACACTCTGGGTGTGTTTGTGTCACGACCCAAACCGGGTTGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATGTAATAACAGTAGAAAATAATGCGGAAGACTTAACTCATTAATAAAATCAATTCAATAACTATCAATATTCAACATCTATTATTCCCAAAACCTGGAAGTCATCATCACAAGAACATCTACGATCAAATGACTAAACTAAGAGTATTCTAAAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGTAGTAAGACTGGCTTGAATTACTGTTGAGTTGAAGACGATGGCACGTTTGCTGCACTCCACAAATAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGGGAACAGTATATATCAATATTATCGTAAATCAACTATAAAACTCAACATGTAGCCACAACAAGTATTATAATCATCAATAAGTACCATCAAGTTCATCCATGAGGGCTCAAGCCTCAACACCATACTCATTTGGGAATTATGTTCGTTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTATTCCTCTTGTGTCGGTACGTGACACTCTGATCCCCTATATCTACGTGTCGGTTCGTGACACCCGATCCCCTACATCATTCTGTAAATCATCAGGCCTTCTCTATACCAAGGTATCATCAATCCTATTACTTTAATTCATCAAGCCTTCTTCTATACCAAGGCATCATCATTAATAATGTATATTAAAGTTTCCTTTCAAGATTTGGGATTCAATATTTTCATCATGCTTATCTTATCACAATCACATAATCATATTCACGCAAACATACAATTAAGCTTATAGTAGGGTTTACAATACTACCAATACATATCATTCTCTATTAAGAGTTTACTATGAAAGCATGAAAACCATAACCTACCTCCACCGAAGAGTTGAATCAAGCAAGAATTTTCCCAAAGCTTTGTTTCTCCCTTCTCGTTCGATTTTCTCTCTCTCTCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATACCCCACTAATTAACTTAGGGTTACCTCTTTTAACCCCTCAAGAATTTGAGTTATTAATATAACCCCACGAACTTTATAATTAAGGCAAGAATAGTCAAAAACGTCCCTTAAAACTTAACCAGAAATCCGACTCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAGAGTTCAGAGACCCAAATTTCCACCAAGGGTCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCCTGCCATTCCGTCACAAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCCTCGTGCCCTTGACGGTCCGTCGTGGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAATTGAAGTCTGTTGCTCAAAACGACTAAACGGGTCGTTACAGTTTGGTATGGAGGAAAATGTTTTCCATGGAAAATGTTTTCCTAGAAAATGTTTTCCTGGAAAACAAGTAAATTTTGGACTTATTTTCTCATGTTTGGTTGGTGAGTAGAAAATATTTTCTGGATATGATTTTTAGTGTTTGATTTATGAATGAAAAATGTTTTTGAGAGACATTTTTTATTTTTACTAGAGTAAAAAATAATTTATGATATTGAAAATATTTTTCAAAATCAAAATTATTATTTTTTTGGGTGGTGGTGGGGGTGGGGTGGGGGCAGGGCGGGGGGAGGGGGAGGGGATAGGAGTGAAAAAATAAAAATTTGAATTTGATAGTATTTTTAAAAAACAAAATTAATTTTTTTGGGGATTGGGGTGGGTGGGGGCTGGTAGGGGGGCTGGCCGGGAGTGGGGGGGAGGGGTAGGAGTTAAAAAATAAAAAATTTGAAGTTGAAAATATTTTTAAAAAGCAAAATTAATTTTTTGAGGAGGGGTTGGGGTTGGGGTTGGGGGGGGCTGGCCGGGGGTTAGGGTCAAGGATCTGGTGAAAAAATAAAATTTTGAAATTGAAAATATTTATTTAAATTGATGATTTTCCCAAAAAAAAGTAATTTGAAATTGGAGGTGAGTTATGGAAAATGTTTTCCTTAATTTTTGAAGGGAAGTCATTTTCCTTAATTTTGAGGAAAATGAGTTGATTTGGAAATCATTTTCCGAAACTTTTGTCCCAACCAAACATGTGGAAATTGGAAAACATTTTCCAGAAAATGTTTTCCTTCATACCAAACACACTCTCTGTCCCCTCAAGGTGGAATCTCACATTCAGAAGGCACTTGAATGATTGAGAAGTGGGTAGATTTGTTGAGTTATTACAAGTGCTTAGTGGTTTCTTAGGTTTATCTACAGGATCAGACACAATGAGGTGGGAACATGACAGTGATGACTAGTTCTTATTAAGAAGACTCTAGAGAAATGAAGTGGTGGAGCAACCAGGAAGGAGGGGACATACCAGGTCCTTGGAAACAGATTTGGAAGTGCAGTGTCCCAAACAAGGTGCACTTGGTTGGTGACCTGAAGAGCATGTCTCACTGATGAAAAATTGGAAAGGAGGGGCTTTCAGATGGTATCCAGATGTTTTGTTTTTGGGCTAGGAGAATGAAGAAACTAATAATCATCTTTTCTTCATTGGAAGATTGTATCACAGATCTGGTCTGTGTTTCCAAGTATATCTCGAGCAAATTGGGTAACGCCTGAACACATTGCTGACCTACTTAGCTGATGCATAAGGAGTGGAGGGAGGGAACAGAGTCAGAAGGGACGGTAAGATAATACCATATTGCATATAGTGGTCAGTATGGAGAGAAGAAACAACAGATGCTTTGAGGATATCTCTAACCCAATCTAGATAATCAAAGAAAATTGTATGAATATTTTGTATTTTTGATGTAAAGAAAGGGTTTAGAAATAGCAGAGCAGTTAGCAGATATTTTAGGATGTTTGTACATTTCTGAATTTTGCTCACCTGCACATGCAAATACTCTTTGATTTGTTACTTCTTAAAATTGGGAAATTGACAAGGTTTTCCACATGGTACAACACACGGCATGGAGTTTGGGCTGAAACAGCCCGTCATGTATCTAAGAATGTGAGAGCCGCTTTAATATAGAACTTTGGTTGGGTATGTCCGCTAGCTAGCCCTTTCAGTATTTGCGAGTTGCACACTTGTTCTGAATATAGCTCACCTGCACATCCATATACTCCTTTGATTTGTTACTTCTTGAAATTGAGAAATTGACAAGGTTTTCTACATGGTACACATGGCATGAAGTTTGGGCTGACACGGCCCATCACGTGTCTTTAAGAATGTGAACTTCCCTTTAATATAGAACTTTGTCTGGTATGTCTGTTAGCTAGCCCTTTCAGCATTTGCGAGTTGCACAGTTTTGTTCTGAATTCTGCTCACCTGCACATGCAAATATGCTTTGATTAGTTACTTCTTGAAATTGAGAAATTGACAAGGTTTTCCACATGATACACATGACATGAAGTTTTTTAGCTTGTCACTTGTCTAAGAATGTGAATGTGTCTCTTTAATATAGAACTTTGTCTTGTGTATCTGCTAGCTATCCCTTTCAACATTTGTGAGTTGCACACTTCTGTTCTGAATTTTGCTCACCTGCACATGCAAATACTCTTTGATTTGTTACTTCTTGAAATTGAGAAATTGACAAGATTTTTCACATGGTACACATGGCACTAATTTTGGGCTAAAACATCTGGTCATGTTACAAGAATGTGAAATGTCGCTTTAATATAGAACTTTGTCTGGTATGTCTGCTAGCTAGCCCTTTCAGCATTTGCATGTTGCACACTTCTGTTCTAAATTTCGCTCACCTGCACATGCAAATACTGGTTGATTTGTTACTTCTTGAAATTTAGAAATTTACAAGGTTTTCACATGGTACATATTTCATGAAGTATGGGCTGATACAGCCCGTCATGTGTCTAAGAATGTGAACGTCCCTTTAGTATAGAACTTTATCTGGTATGTCTGCTAGTTAGCCCTCCCCCATTTTCCTTCTTGAATGCCTCTCCTCATCCTAAAATGGAGACAAGAACACCAACTTGAATTTTCTTTACTTTAGTAGTCTTTTTTTTTCTTCATCTTGTTTGTGTTCATCTCTTGCTTGTTGCTCTTTTTGATAAGGTAATGTTTTAATTAATGATTGGAGAAATCCCATATACAAGCCATACACCAAAAAATAAAGAATGTAAACCAAAATATTGTTCTCTACGAAAGGAAAACCAATCATCTATAAAACAGGCACCTTATGGGTGGTGTCATCTTATTTGTATTCACGTCTTTGCTTGTTGCTTATGTAGTTTATACAATTGTTGTTTATGTTTTGATGCATCATTTCACTTCTTGTGGCTCTAATGATGCACTTGATTATATTGAACTAACAGGTTGGAGCAAAAGATCACCAGCGTTTCCAAGCATCTTATGCAATTTTGCTGAAGGCCCGGTTGACTGCACTAAAGAAGAGGGAGAGGAAGGACAAGAGGAAGGCTACTGATTCTGACAAAAAGATGGATATTTCGAAAAAGAAATCTGCTGCTGCTAAAGCCTCTACATGAAACTTTAGTCCTTTGGTTTATTCCCCCATTTTGTTTCTAGGATAGAGTTGTAGGATTTGAACCCCATCCATTTGGGGCGACAAGTCTGAAACTTCATTACAACTCCACTGCATAGAATGAAGAAAGGAGGTGTTTTTACTCAATTTGATTATTCACATCTAAATTAGTCAAACTTTTTAAAGAGCTTGTTGGGTTATGGAACAGTTGAAGGAATTTTGTCATAATCTTGATCTTTTAATTCCTT</genome_strand>
        <mrna_strand>CTCTTCATCGCTGTGTTGAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGATTACAGCCAGACCCATTCCTCAATGAACTGACGAGTATGTTTGAGCGAACTACTGAGCATGGTTCCGTTTGGGTTACGCTTAAACACT............................................................................................CTTCTGATAAATCTAAAGCCCAACGGAATAAGATGAAGACAGCTGGTGAAACTCTTGAATTTAAGTGCCTCATCCGAGCAACTGATGGGAAAAAGAATATTTCCACAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGCAAAAGATCACCAGCGTTTCCAAGCATCTTATGCAATTTTGCTGAAGGCCCGGTTGACTGCACTAAAGAAGAGGGAGAGGAAGGACAAGAGGAAGGCTACTGATTCTGACAAAAAGATGGATATTTCGAAAAAGAAATCTGCTGCTGCTAAAGCCTCTACATGAAACTTTAGTCCTTTGGTTTATTCCCCCATTTTGTTTCTAGGATAGAGTTGTAGGATTTGAACCCCATCCATTTGGGGCGACAAGTCTGAAACTTCATTACAACTCCACTGCATAGAATGAAGAAAGGAGGTGTTTTTACTCAATTTGATTATTCACATCTAAATTAGTCAAACTTTTTAAAGAGCTTGTTGGGTTATGGAACAGTTGAAGGAATTTTGTCATAATCTTGATCTTTTAATTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723581" ref_strand="+" ref_description="SGN-E723581 [FC20DG10]">
      <seq>gcttctcttcatcgctctgttgaagttttggtttttgagttttgagatttgctgttcgaagatggtgcgattacagccagacccattcctcaatgaactgacgagtatgtttgagcgaactactgagcatggttccgtttgggttacgcttaaacactcttctgataaatctaaagcccaacggaataagatgaagacagctggtgaaactcttgaatttaagtgcctcatccgagcaactgatgggaaaaagaatatttccacaatggttggagcaaaagatcaccagcgtttccaagcatcttatgcaattttgctgaaggcccggttgactgcactaaagaagagggagaggaaggacaagaggaaggctactgattctgacaaaaagatggatatttcgaaaaagaaatctgctgctgctaaagcctctacatgaaactttagtcctttggtttattcccccattttgtttctaggatagagttgtaggatttgaaccccatccatttggggcgacaagtctgaaacttcattacaactccactgcatagaatgaagaaaggaggtgtttttactcaatttgattattcacatctaaattagtcaaactttttaaagagcttgttgggttatggaacagttgaaggaattttgtcataatcttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="-" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103543" stop="94050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103243" g_stop="103180" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103179" i_stop="102415" i_length="765">
            <donor d_prob="0.726" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102414" g_stop="102321" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="158" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102320" i_stop="102229" i_length="92">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102228" g_stop="102119" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="268" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102118" i_stop="94751" i_length="7368">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94750" g_stop="94351" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="668" r_length="400" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="676" polyA_stop="726"/>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="-" ref_id="SGN-E723581" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103243" e_stop="103180"/>
          <exon e_start="102414" e_stop="102321"/>
          <exon e_start="102228" e_stop="102119"/>
          <exon e_start="94750" e_stop="94351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTCTTCATCGCTGTGTTGAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATGGTAAGCGCTAACTTCAACTCATCAAAATCAATTGATCGCAATACTCTTTCGAATCAAATCTGGAAATCAAACAATGTAGAATTTTTTGATGTTAATTTTTCTTTGTTTACGCCGTTTTCAGCTTTATTTGATCTATATTTCCTTTTTGAGATTATGGGTTTCTGTAGAGTATAAATTCATGTTAGATTCTTTGTGTTCTTGAGTTGTTATGTATGTATCCCGAATCTCACTATATTGAATTGTGGAAATTAGTTAATACCAGTTTAAAATGGTGCTTATCGATTGAATTAACTAATTGGGGGTTGAGGTGATGGAAAACTTTCCCACTTAGCATTATACTCGAGTGCTGATGAATTTGATGTGTAGGTTAGAAAATTTGTTGAATCTGATGTTTTTACTTCATCCTTTAACTGGATAAAGGAGGAGGATTACATGGGTTGGGTTGATAGCCAGCGTAGAAATAAGCGAAATTACAGGAATCTTCTAAGTCTACACACTGGTTTCATCCTTGCTTTCTCTCCTGAGCACACACTCAAGCTACCCAACTACTGTATTTCTTCCTCCTTTATTCAGGTGGCACTGGTGAAGCATGCTCACATTGTTTATGTTAAGTAATCACATTGTGGAGTTCAATGTGCTTCCTATTTGTGGATACAAAATTATATGGCATTTTGCTTATTTTTGGGAAGTTTGAAAGAAGTGGCTTTGTCCATCTTTTTGGTAGAACATAAGTTGACAATTACTGATCTGAATTGGATTTGTCAGGTGCGATTACAGCCAGACCCATTCCTCAATGAACTGACGAGTATGTTTGAGCGAACTACTGAGCATGGTTCCGTTTGGGTTACGCTTAAACACTGTGAGTTTGCCTCTTCGTTGGTTTTCCTGTGTTTTGTGCTTTGTATTCTCTTTATGAGTAATACTGATTGAGCAATCTTGTCCTTTGTATAGCTTCTGATAAATCTAAAGCCCAACGGAATAAGATGAAGACAGCTGGTGAAACTCTTGAATTTAAGTGCCTCATCCGAGCAACTGATGGGAAAAAGAATATTTCCACAATGGTAATTATCACAATAGAAAGTCTCTTACCTTTTTCCATCACCTTCTTTTTGCAAGTCTTGTCGTTTTCCCCATTTTTTTGCTTTGTTGGGCACTATGTTCTCTGGAACATTGAGGGTGTTAGTTTGTTGTATGAATTATTTTTTAGCATAAGTTTAAATGTGCAAATATAGATAATTCTAGGTCCTGGCCTGTATGTTTGAGATTGAGAGCATCAAATTCAAAAAAAGGATGGTAGCCTTGTGGTGCATAGAGAATGGGAGTCGTGGTCCTTGTTTACTTGATTGATAACTAATAGGTATCGTACATGCTTGTAATACAATATTAGAGCACATAAAGGGACAATTTCTCATAAAAGGCAAACAAATTATGGATGCAACTCTTTTAGTCAGTGAACCTGTGGATTCTAGACTCGAAGGTGAAGATCCAGGGATCATGTGAAACCTAGCTATAGAGAACCCATTATGATCATGTCAACTGGGAGTTACTTCTCAACCTTCTTTAAAAAATGGGTTTTGGTGGAAGATGGTTAAAGTGGATGGTTTTTGTATCAATACTGTCCTGAATTCTAGTCATAGGAGAAATTGCTGGAATTTTCCCTCAGAGAAAGAGGACTCGGGGAGACCCCCCTCTCTTTGCCTTTTCATATTAGCTATGGAAGGTTTCAGTAGTATGATGAGAGGTACTATTCAGAACAGTGGATAAAAGGTTTCAGGATAGGCAATCAAGCAGGGGAAGAGATGTAGATTTCCTTTCATTATTGCTGATGATATAGTTGTTTTCTAAGATGCTAAAGCAGATCAGATCATGTACATCAGAATGATTTTGGTGATCTTTGGGCAATTTTTGGTCCATTTGTAAAATTGGAGGAAAGGTAGTAGTTTCCCTGTCAAAGAAGTTCCACAAATTCAATGCCTGTCCATGTTATAAGTTTCGATGATTTAACAAACTATGACATCTAGTTGGGGACCTGATCCCATGAGGGACTGAGAGTTTCAGGCAATGTGCAAAGGACAGTTGTAAAGCTGCAACTGCTGCCACAATTGCAGTGGTTGGTGCACCTTTTCAGAGGAATAGTACTCAGCCAATGGCGTTGCACTAGGTAGTTTGTCCATCTTATAATAGTCATCTTGTCAAGGGACGTTTCCTAATTTTTGAGTTGAAGATTTCCATACGGCAAAATCCACTCTCAAAAAGAAATATTCTCATATGCATCAAGAGATCTGATCGAGTGATCTACTGTTCCCTTTAGTTGTTATTTTAGTTTATCGTCTCGTGTTTATACAGTGTAAGATCTGTTCATATGTTATAAAGGAATCAGATCATTTCAGTTGTAATCGTTGTTAAAAGTTTGAGTTGTAGCTAGAGTTAGCTATGTCGTGTTCTTGAAGTCTACATTAACTTAGCTTGTTGGCGTAGTAGGCAATAGAGGTATTACTTTGTTTATGAGTAACAAAGCTGTTACGAAAGGAGAAGGGATTAAGAGTTCATTTCCTAGGTTGCAAGAGTTTGTAATCGGGATCTTAACTCTTTGAAGTAATGGAATTGGCGAAATCCTGTGAGACAGGTTGTGATTTTCTCCTTCCTTAAGCAAGGGGGTTAACACGTAAACATTTTGTGTTCTTTATTTTAAGTTTTTCTTTCTGCACTGTTCTTACTATGTGAACGGACTTGGTCCATTGACTTGTGGTGGACGCATGTAAGTCATCAGTCCAACATCTTGAGTTGTAAAATTGAGAATTTCCCGACCAACTTACTTGGGGATGCCCCTTGGAAACAATCATAAGGAGCTAGAAGTTTGGGATGAGATTATTGAAAAAATTAGTAACCAAACTCAAAATGTGTTGAGCGCTCGACTTGCTTTATGTGCGCTTCGGTGTCGTCACCAGTGTTCTAAGACATATTTTTCCTTGCCAATGTGTCTCTGCCGAAGAGGTGACACTAAACAATTGATATTTCACTTAATCACATTTTTTTTGAAAAGGTACTTTATCATTATTTTTTTCGATTTCTTCAGTCATATATTTGTTATTTGTGTTTATAATTATTCGTCTTGGACTCAGCATATATATTTGTAATTTTTTCTCCCTTTGTGCCTTTTTTCATTAAAGCCCATTCTTTGTTTGCACATAAAGGTCCAATGGGCCTTAGAGTTTTTTTGCGCTTTTCGCGTTTGATAACACTTGAAAAACTAGCCAATTGGAAAGCCCGATGTTTATCTCTTGGAGGAAGTAGTACTCTTATGAACTCAGTATTGGACTCATTGCCAACACATGTCATGTCCTTATTTCTAATGCCTTCAGGTGGAGGATACCATACAAGTTGAGGACTTTCTATGTTAGGTAATAAGGAGGGCAGAGGTATTCACTAAGTGAAATGCCAAACTGCTCAGCTTATGGTTGACTTGGTATTAGGAATCTGGGGCTTCAAAACAGATGCTTATTGACAAAATGGAGGTTTGTTGGTGAGGATCATGCACTCTGGAAGGAAGTAACTATAAAAATATGGGCAGAGTAACTATTTGTGTTCTAATATGGTCTATGTTGGCTGGGAATATAGACTGTAGTGTGTGGAATGACACCTAGATCCTTTTTCCGAGAGATAAATGGATTGGACTCGAGCCTTTAATGAGCTCATTTTCGGAACTGTTCTCATTTTGTAGCAACTCTGAAGCATCAATAGTTGACACTCTGGGTGTGTTTGTGTCACGACCCAAACCGGGTTGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATGTAATAACAGTAGAAAATAATGCGGAAGACTTAACTCATTAATAAAATCAATTCAATAACTATCAATATTCAACATCTATTATTCCCAAAACCTGGAAGTCATCATCACAAGAACATCTACGATCAAATGACTAAACTAAGAGTATTCTAAAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGTAGTAAGACTGGCTTGAATTACTGTTGAGTTGAAGACGATGGCACGTTTGCTGCACTCCACAAATAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGGGAACAGTATATATCAATATTATCGTAAATCAACTATAAAACTCAACATGTAGCCACAACAAGTATTATAATCATCAATAAGTACCATCAAGTTCATCCATGAGGGCTCAAGCCTCAACACCATACTCATTTGGGAATTATGTTCGTTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTATTCCTCTTGTGTCGGTACGTGACACTCTGATCCCCTATATCTACGTGTCGGTTCGTGACACCCGATCCCCTACATCATTCTGTAAATCATCAGGCCTTCTCTATACCAAGGTATCATCAATCCTATTACTTTAATTCATCAAGCCTTCTTCTATACCAAGGCATCATCATTAATAATGTATATTAAAGTTTCCTTTCAAGATTTGGGATTCAATATTTTCATCATGCTTATCTTATCACAATCACATAATCATATTCACGCAAACATACAATTAAGCTTATAGTAGGGTTTACAATACTACCAATACATATCATTCTCTATTAAGAGTTTACTATGAAAGCATGAAAACCATAACCTACCTCCACCGAAGAGTTGAATCAAGCAAGAATTTTCCCAAAGCTTTGTTTCTCCCTTCTCGTTCGATTTTCTCTCTCTCTCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATACCCCACTAATTAACTTAGGGTTACCTCTTTTAACCCCTCAAGAATTTGAGTTATTAATATAACCCCACGAACTTTATAATTAAGGCAAGAATAGTCAAAAACGTCCCTTAAAACTTAACCAGAAATCCGACTCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAGAGTTCAGAGACCCAAATTTCCACCAAGGGTCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCCTGCCATTCCGTCACAAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCCTCGTGCCCTTGACGGTCCGTCGTGGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAATTGAAGTCTGTTGCTCAAAACGACTAAACGGGTCGTTACAGTTTGGTATGGAGGAAAATGTTTTCCATGGAAAATGTTTTCCTAGAAAATGTTTTCCTGGAAAACAAGTAAATTTTGGACTTATTTTCTCATGTTTGGTTGGTGAGTAGAAAATATTTTCTGGATATGATTTTTAGTGTTTGATTTATGAATGAAAAATGTTTTTGAGAGACATTTTTTATTTTTACTAGAGTAAAAAATAATTTATGATATTGAAAATATTTTTCAAAATCAAAATTATTATTTTTTTGGGTGGTGGTGGGGGTGGGGTGGGGGCAGGGCGGGGGGAGGGGGAGGGGATAGGAGTGAAAAAATAAAAATTTGAATTTGATAGTATTTTTAAAAAACAAAATTAATTTTTTTGGGGATTGGGGTGGGTGGGGGCTGGTAGGGGGGCTGGCCGGGAGTGGGGGGGAGGGGTAGGAGTTAAAAAATAAAAAATTTGAAGTTGAAAATATTTTTAAAAAGCAAAATTAATTTTTTGAGGAGGGGTTGGGGTTGGGGTTGGGGGGGGCTGGCCGGGGGTTAGGGTCAAGGATCTGGTGAAAAAATAAAATTTTGAAATTGAAAATATTTATTTAAATTGATGATTTTCCCAAAAAAAAGTAATTTGAAATTGGAGGTGAGTTATGGAAAATGTTTTCCTTAATTTTTGAAGGGAAGTCATTTTCCTTAATTTTGAGGAAAATGAGTTGATTTGGAAATCATTTTCCGAAACTTTTGTCCCAACCAAACATGTGGAAATTGGAAAACATTTTCCAGAAAATGTTTTCCTTCATACCAAACACACTCTCTGTCCCCTCAAGGTGGAATCTCACATTCAGAAGGCACTTGAATGATTGAGAAGTGGGTAGATTTGTTGAGTTATTACAAGTGCTTAGTGGTTTCTTAGGTTTATCTACAGGATCAGACACAATGAGGTGGGAACATGACAGTGATGACTAGTTCTTATTAAGAAGACTCTAGAGAAATGAAGTGGTGGAGCAACCAGGAAGGAGGGGACATACCAGGTCCTTGGAAACAGATTTGGAAGTGCAGTGTCCCAAACAAGGTGCACTTGGTTGGTGACCTGAAGAGCATGTCTCACTGATGAAAAATTGGAAAGGAGGGGCTTTCAGATGGTATCCAGATGTTTTGTTTTTGGGCTAGGAGAATGAAGAAACTAATAATCATCTTTTCTTCATTGGAAGATTGTATCACAGATCTGGTCTGTGTTTCCAAGTATATCTCGAGCAAATTGGGTAACGCCTGAACACATTGCTGACCTACTTAGCTGATGCATAAGGAGTGGAGGGAGGGAACAGAGTCAGAAGGGACGGTAAGATAATACCATATTGCATATAGTGGTCAGTATGGAGAGAAGAAACAACAGATGCTTTGAGGATATCTCTAACCCAATCTAGATAATCAAAGAAAATTGTATGAATATTTTGTATTTTTGATGTAAAGAAAGGGTTTAGAAATAGCAGAGCAGTTAGCAGATATTTTAGGATGTTTGTACATTTCTGAATTTTGCTCACCTGCACATGCAAATACTCTTTGATTTGTTACTTCTTAAAATTGGGAAATTGACAAGGTTTTCCACATGGTACAACACACGGCATGGAGTTTGGGCTGAAACAGCCCGTCATGTATCTAAGAATGTGAGAGCCGCTTTAATATAGAACTTTGGTTGGGTATGTCCGCTAGCTAGCCCTTTCAGTATTTGCGAGTTGCACACTTGTTCTGAATATAGCTCACCTGCACATCCATATACTCCTTTGATTTGTTACTTCTTGAAATTGAGAAATTGACAAGGTTTTCTACATGGTACACATGGCATGAAGTTTGGGCTGACACGGCCCATCACGTGTCTTTAAGAATGTGAACTTCCCTTTAATATAGAACTTTGTCTGGTATGTCTGTTAGCTAGCCCTTTCAGCATTTGCGAGTTGCACAGTTTTGTTCTGAATTCTGCTCACCTGCACATGCAAATATGCTTTGATTAGTTACTTCTTGAAATTGAGAAATTGACAAGGTTTTCCACATGATACACATGACATGAAGTTTTTTAGCTTGTCACTTGTCTAAGAATGTGAATGTGTCTCTTTAATATAGAACTTTGTCTTGTGTATCTGCTAGCTATCCCTTTCAACATTTGTGAGTTGCACACTTCTGTTCTGAATTTTGCTCACCTGCACATGCAAATACTCTTTGATTTGTTACTTCTTGAAATTGAGAAATTGACAAGATTTTTCACATGGTACACATGGCACTAATTTTGGGCTAAAACATCTGGTCATGTTACAAGAATGTGAAATGTCGCTTTAATATAGAACTTTGTCTGGTATGTCTGCTAGCTAGCCCTTTCAGCATTTGCATGTTGCACACTTCTGTTCTAAATTTCGCTCACCTGCACATGCAAATACTGGTTGATTTGTTACTTCTTGAAATTTAGAAATTTACAAGGTTTTCACATGGTACATATTTCATGAAGTATGGGCTGATACAGCCCGTCATGTGTCTAAGAATGTGAACGTCCCTTTAGTATAGAACTTTATCTGGTATGTCTGCTAGTTAGCCCTCCCCCATTTTCCTTCTTGAATGCCTCTCCTCATCCTAAAATGGAGACAAGAACACCAACTTGAATTTTCTTTACTTTAGTAGTCTTTTTTTTTCTTCATCTTGTTTGTGTTCATCTCTTGCTTGTTGCTCTTTTTGATAAGGTAATGTTTTAATTAATGATTGGAGAAATCCCATATACAAGCCATACACCAAAAAATAAAGAATGTAAACCAAAATATTGTTCTCTACGAAAGGAAAACCAATCATCTATAAAACAGGCACCTTATGGGTGGTGTCATCTTATTTGTATTCACGTCTTTGCTTGTTGCTTATGTAGTTTATACAATTGTTGTTTATGTTTTGATGCATCATTTCACTTCTTGTGGCTCTAATGATGCACTTGATTATATTGAACTAACAGGTTGGAGCAAAAGATCACCAGCGTTTCCAAGCATCTTATGCAATTTTGCTGAAGGCCCGGTTGACTGCACTAAAGAAGAGGGAGAGGAAGGACAAGAGGAAGGCTACTGATTCTGACAAAAAGATGGATATTTCGAAAAAGAAATCTGCTGCTGCTAAAGCCTCTACATGAAACTTTAGTCCTTTGGTTTATTCCCCCATTTTGTTTCTAGGATAGAGTTGTAGGATTTGAACCCCATCCATTTGGGGCGACAAGTCTGAAACTTCATTACAACTCCACTGCATAGAATGAAGAAAGGAGGTGTTTTTACTCAATTTGATTATTCACATCTAAATTAGTCAAACTTTTTAAAGAGCTTGTTGGGTTATGGAACAGTTGAAGGAATTTTGTCATAATCTTG</genome_strand>
        <mrna_strand>GCTTCTCTTCATCGCTCTGTTGAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGATTACAGCCAGACCCATTCCTCAATGAACTGACGAGTATGTTTGAGCGAACTACTGAGCATGGTTCCGTTTGGGTTACGCTTAAACACT............................................................................................CTTCTGATAAATCTAAAGCCCAACGGAATAAGATGAAGACAGCTGGTGAAACTCTTGAATTTAAGTGCCTCATCCGAGCAACTGATGGGAAAAAGAATATTTCCACAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGCAAAAGATCACCAGCGTTTCCAAGCATCTTATGCAATTTTGCTGAAGGCCCGGTTGACTGCACTAAAGAAGAGGGAGAGGAAGGACAAGAGGAAGGCTACTGATTCTGACAAAAAGATGGATATTTCGAAAAAGAAATCTGCTGCTGCTAAAGCCTCTACATGAAACTTTAGTCCTTTGGTTTATTCCCCCATTTTGTTTCTAGGATAGAGTTGTAGGATTTGAACCCCATCCATTTGGGGCGACAAGTCTGAAACTTCATTACAACTCCACTGCATAGAATGAAGAAAGGAGGTGTTTTTACTCAATTTGATTATTCACATCTAAATTAGTCAAACTTTTTAAAGAGCTTGTTGGGTTATGGAACAGTTGAAGGAATTTTGTCATAATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357811" ref_strand="-" ref_description="SGN-E357811 [cTOS-24-A8]">
      <seq>caaaaagatcaccagcgtttccaagcatcttatgcaattttgctgaaggccccggttgactgcactaaagaagagggagaggaaggacaaagaggaagggctactgattctgacaaaaaagatggatattcgaaaaaagaaatctgctgctgctaaagcctctacatgaaactttagtcctttggtttattcccccattttgtttctaggatagagttgtaggatttgaaccccatccatttggggcgacaagtctgaaacttcattacaactccactgcatagaatgaagaaaggaggtgtttttactcaatttgattattcacatctaaattagtcaaactttttaaagagcttgttgggttatggaacagttgaaggaattttgtcataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="-" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95042" stop="94056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94744" g_stop="94357" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="393" polyA_stop="408"/>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="-" ref_id="SGN-E357811" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357811" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94744" e_stop="94357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAGATCACCAGCGTTTCCAAGCATCTTATGCAATTTTGCTGAAGG-CCCGGTTGACTGCACTAAAGAAGAGGGAGAGGAAGGAC-AAGAGGAA-GGCTACTGATTCTGAC-AAAAAGATGGATATTTCGAAAAAGAAATCTGCTGCTGCTAAAGCCTCTACATGAAACTTTAGTCCTTTGGTTTATTCCCCCATTTTGTTTCTAGGATAGAGTTGTAGGATTTGAACCCCATCCATTTGGGGCGACAAGTCTGAAACTTCATTACAACTCCACTGCATAGAATGAAGAAAGGAGGTGTTTTTACTCAATTTGATTATTCACATCTAAATTAGTCAAACTTTTTAAAGAGCTTGTTGGGTTATGGAACAGTTGAAGGAATTTTGTCATA</genome_strand>
        <mrna_strand>CAAAAAGATCACCAGCGTTTCCAAGCATCTTATGCAATTTTGCTGAAGGCCCCGGTTGACTGCACTAAAGAAGAGGGAGAGGAAGGACAAAGAGGAAGGGCTACTGATTCTGACAAAAAAGATGGATATTCGAAAAAAGAAATCTGCTGCTGCTAAAGCCTCTACATGAAACTTTAGTCCTTTGGTTTATTCCCCCATTTTGTTTCTAGGATAGAGTTGTAGGATTTGAACCCCATCCATTTGGGGCGACAAGTCTGAAACTTCATTACAACTCCACTGCATAGAATGAAGAAAGGAGGTGTTTTTACTCAATTTGATTATTCACATCTAAATTAGTCAAACTTTTTAAAGAGCTTGTTGGGTTATGGAACAGTTGAAGGAATTTTGTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287436" ref_strand="+" ref_description="SGN-E287436 [cLES-15-H9]">
      <seq>tttgacccatcgcttctcttcatcgctgtgttgaagttttggtttttgagttttgagatttgctgttcgaagatggtgcgattacagccagacccattcctcaatgaactgacgagtatgtttgagcgaactactgagcatggttccgtttgggttacgcttaaacactcttctgataaatctaaagcccaacggaataagatgaagacagctggtgaaactcttgaatttaagtgcctcatccgagcaactgatgggaaaaagaatatttccacaatggttggagcaaaagatcaccagcgtttccaagcatcttatgcaattttgctgaaggcccggttgactgcactaaagaagagggagaggaaggacaagaggaaggctactgattctgacaaaaagatggatatttcgaaaaagaaatctgctgctgctaaagcctctacatgaaactttagtcctttggtttattcccccattttgtttctaggatagagttgtaggatttgaaccccatccatttggggcgacaagtctgaaacttcattacaactccactgcatagaatgaagaaaggaggtgtttttactcaatttgattattcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="-" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103554" stop="94123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103254" g_stop="103180" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103179" i_stop="102415" i_length="765">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102414" g_stop="102321" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="169" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102320" i_stop="102229" i_length="92">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102228" g_stop="102119" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="279" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102118" i_stop="94751" i_length="7368">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94750" g_stop="94423" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="607" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="-" ref_id="SGN-E287436" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103254" e_stop="103180"/>
          <exon e_start="102414" e_stop="102321"/>
          <exon e_start="102228" e_stop="102119"/>
          <exon e_start="94750" e_stop="94423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACCCATCGCTTCTCTTCATCGCTGTGTTGAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATGGTAAGCGCTAACTTCAACTCATCAAAATCAATTGATCGCAATACTCTTTCGAATCAAATCTGGAAATCAAACAATGTAGAATTTTTTGATGTTAATTTTTCTTTGTTTACGCCGTTTTCAGCTTTATTTGATCTATATTTCCTTTTTGAGATTATGGGTTTCTGTAGAGTATAAATTCATGTTAGATTCTTTGTGTTCTTGAGTTGTTATGTATGTATCCCGAATCTCACTATATTGAATTGTGGAAATTAGTTAATACCAGTTTAAAATGGTGCTTATCGATTGAATTAACTAATTGGGGGTTGAGGTGATGGAAAACTTTCCCACTTAGCATTATACTCGAGTGCTGATGAATTTGATGTGTAGGTTAGAAAATTTGTTGAATCTGATGTTTTTACTTCATCCTTTAACTGGATAAAGGAGGAGGATTACATGGGTTGGGTTGATAGCCAGCGTAGAAATAAGCGAAATTACAGGAATCTTCTAAGTCTACACACTGGTTTCATCCTTGCTTTCTCTCCTGAGCACACACTCAAGCTACCCAACTACTGTATTTCTTCCTCCTTTATTCAGGTGGCACTGGTGAAGCATGCTCACATTGTTTATGTTAAGTAATCACATTGTGGAGTTCAATGTGCTTCCTATTTGTGGATACAAAATTATATGGCATTTTGCTTATTTTTGGGAAGTTTGAAAGAAGTGGCTTTGTCCATCTTTTTGGTAGAACATAAGTTGACAATTACTGATCTGAATTGGATTTGTCAGGTGCGATTACAGCCAGACCCATTCCTCAATGAACTGACGAGTATGTTTGAGCGAACTACTGAGCATGGTTCCGTTTGGGTTACGCTTAAACACTGTGAGTTTGCCTCTTCGTTGGTTTTCCTGTGTTTTGTGCTTTGTATTCTCTTTATGAGTAATACTGATTGAGCAATCTTGTCCTTTGTATAGCTTCTGATAAATCTAAAGCCCAACGGAATAAGATGAAGACAGCTGGTGAAACTCTTGAATTTAAGTGCCTCATCCGAGCAACTGATGGGAAAAAGAATATTTCCACAATGGTAATTATCACAATAGAAAGTCTCTTACCTTTTTCCATCACCTTCTTTTTGCAAGTCTTGTCGTTTTCCCCATTTTTTTGCTTTGTTGGGCACTATGTTCTCTGGAACATTGAGGGTGTTAGTTTGTTGTATGAATTATTTTTTAGCATAAGTTTAAATGTGCAAATATAGATAATTCTAGGTCCTGGCCTGTATGTTTGAGATTGAGAGCATCAAATTCAAAAAAAGGATGGTAGCCTTGTGGTGCATAGAGAATGGGAGTCGTGGTCCTTGTTTACTTGATTGATAACTAATAGGTATCGTACATGCTTGTAATACAATATTAGAGCACATAAAGGGACAATTTCTCATAAAAGGCAAACAAATTATGGATGCAACTCTTTTAGTCAGTGAACCTGTGGATTCTAGACTCGAAGGTGAAGATCCAGGGATCATGTGAAACCTAGCTATAGAGAACCCATTATGATCATGTCAACTGGGAGTTACTTCTCAACCTTCTTTAAAAAATGGGTTTTGGTGGAAGATGGTTAAAGTGGATGGTTTTTGTATCAATACTGTCCTGAATTCTAGTCATAGGAGAAATTGCTGGAATTTTCCCTCAGAGAAAGAGGACTCGGGGAGACCCCCCTCTCTTTGCCTTTTCATATTAGCTATGGAAGGTTTCAGTAGTATGATGAGAGGTACTATTCAGAACAGTGGATAAAAGGTTTCAGGATAGGCAATCAAGCAGGGGAAGAGATGTAGATTTCCTTTCATTATTGCTGATGATATAGTTGTTTTCTAAGATGCTAAAGCAGATCAGATCATGTACATCAGAATGATTTTGGTGATCTTTGGGCAATTTTTGGTCCATTTGTAAAATTGGAGGAAAGGTAGTAGTTTCCCTGTCAAAGAAGTTCCACAAATTCAATGCCTGTCCATGTTATAAGTTTCGATGATTTAACAAACTATGACATCTAGTTGGGGACCTGATCCCATGAGGGACTGAGAGTTTCAGGCAATGTGCAAAGGACAGTTGTAAAGCTGCAACTGCTGCCACAATTGCAGTGGTTGGTGCACCTTTTCAGAGGAATAGTACTCAGCCAATGGCGTTGCACTAGGTAGTTTGTCCATCTTATAATAGTCATCTTGTCAAGGGACGTTTCCTAATTTTTGAGTTGAAGATTTCCATACGGCAAAATCCACTCTCAAAAAGAAATATTCTCATATGCATCAAGAGATCTGATCGAGTGATCTACTGTTCCCTTTAGTTGTTATTTTAGTTTATCGTCTCGTGTTTATACAGTGTAAGATCTGTTCATATGTTATAAAGGAATCAGATCATTTCAGTTGTAATCGTTGTTAAAAGTTTGAGTTGTAGCTAGAGTTAGCTATGTCGTGTTCTTGAAGTCTACATTAACTTAGCTTGTTGGCGTAGTAGGCAATAGAGGTATTACTTTGTTTATGAGTAACAAAGCTGTTACGAAAGGAGAAGGGATTAAGAGTTCATTTCCTAGGTTGCAAGAGTTTGTAATCGGGATCTTAACTCTTTGAAGTAATGGAATTGGCGAAATCCTGTGAGACAGGTTGTGATTTTCTCCTTCCTTAAGCAAGGGGGTTAACACGTAAACATTTTGTGTTCTTTATTTTAAGTTTTTCTTTCTGCACTGTTCTTACTATGTGAACGGACTTGGTCCATTGACTTGTGGTGGACGCATGTAAGTCATCAGTCCAACATCTTGAGTTGTAAAATTGAGAATTTCCCGACCAACTTACTTGGGGATGCCCCTTGGAAACAATCATAAGGAGCTAGAAGTTTGGGATGAGATTATTGAAAAAATTAGTAACCAAACTCAAAATGTGTTGAGCGCTCGACTTGCTTTATGTGCGCTTCGGTGTCGTCACCAGTGTTCTAAGACATATTTTTCCTTGCCAATGTGTCTCTGCCGAAGAGGTGACACTAAACAATTGATATTTCACTTAATCACATTTTTTTTGAAAAGGTACTTTATCATTATTTTTTTCGATTTCTTCAGTCATATATTTGTTATTTGTGTTTATAATTATTCGTCTTGGACTCAGCATATATATTTGTAATTTTTTCTCCCTTTGTGCCTTTTTTCATTAAAGCCCATTCTTTGTTTGCACATAAAGGTCCAATGGGCCTTAGAGTTTTTTTGCGCTTTTCGCGTTTGATAACACTTGAAAAACTAGCCAATTGGAAAGCCCGATGTTTATCTCTTGGAGGAAGTAGTACTCTTATGAACTCAGTATTGGACTCATTGCCAACACATGTCATGTCCTTATTTCTAATGCCTTCAGGTGGAGGATACCATACAAGTTGAGGACTTTCTATGTTAGGTAATAAGGAGGGCAGAGGTATTCACTAAGTGAAATGCCAAACTGCTCAGCTTATGGTTGACTTGGTATTAGGAATCTGGGGCTTCAAAACAGATGCTTATTGACAAAATGGAGGTTTGTTGGTGAGGATCATGCACTCTGGAAGGAAGTAACTATAAAAATATGGGCAGAGTAACTATTTGTGTTCTAATATGGTCTATGTTGGCTGGGAATATAGACTGTAGTGTGTGGAATGACACCTAGATCCTTTTTCCGAGAGATAAATGGATTGGACTCGAGCCTTTAATGAGCTCATTTTCGGAACTGTTCTCATTTTGTAGCAACTCTGAAGCATCAATAGTTGACACTCTGGGTGTGTTTGTGTCACGACCCAAACCGGGTTGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATGTAATAACAGTAGAAAATAATGCGGAAGACTTAACTCATTAATAAAATCAATTCAATAACTATCAATATTCAACATCTATTATTCCCAAAACCTGGAAGTCATCATCACAAGAACATCTACGATCAAATGACTAAACTAAGAGTATTCTAAAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGTAGTAAGACTGGCTTGAATTACTGTTGAGTTGAAGACGATGGCACGTTTGCTGCACTCCACAAATAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGGGAACAGTATATATCAATATTATCGTAAATCAACTATAAAACTCAACATGTAGCCACAACAAGTATTATAATCATCAATAAGTACCATCAAGTTCATCCATGAGGGCTCAAGCCTCAACACCATACTCATTTGGGAATTATGTTCGTTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTATTCCTCTTGTGTCGGTACGTGACACTCTGATCCCCTATATCTACGTGTCGGTTCGTGACACCCGATCCCCTACATCATTCTGTAAATCATCAGGCCTTCTCTATACCAAGGTATCATCAATCCTATTACTTTAATTCATCAAGCCTTCTTCTATACCAAGGCATCATCATTAATAATGTATATTAAAGTTTCCTTTCAAGATTTGGGATTCAATATTTTCATCATGCTTATCTTATCACAATCACATAATCATATTCACGCAAACATACAATTAAGCTTATAGTAGGGTTTACAATACTACCAATACATATCATTCTCTATTAAGAGTTTACTATGAAAGCATGAAAACCATAACCTACCTCCACCGAAGAGTTGAATCAAGCAAGAATTTTCCCAAAGCTTTGTTTCTCCCTTCTCGTTCGATTTTCTCTCTCTCTCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATACCCCACTAATTAACTTAGGGTTACCTCTTTTAACCCCTCAAGAATTTGAGTTATTAATATAACCCCACGAACTTTATAATTAAGGCAAGAATAGTCAAAAACGTCCCTTAAAACTTAACCAGAAATCCGACTCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAGAGTTCAGAGACCCAAATTTCCACCAAGGGTCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCCTGCCATTCCGTCACAAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCCTCGTGCCCTTGACGGTCCGTCGTGGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAATTGAAGTCTGTTGCTCAAAACGACTAAACGGGTCGTTACAGTTTGGTATGGAGGAAAATGTTTTCCATGGAAAATGTTTTCCTAGAAAATGTTTTCCTGGAAAACAAGTAAATTTTGGACTTATTTTCTCATGTTTGGTTGGTGAGTAGAAAATATTTTCTGGATATGATTTTTAGTGTTTGATTTATGAATGAAAAATGTTTTTGAGAGACATTTTTTATTTTTACTAGAGTAAAAAATAATTTATGATATTGAAAATATTTTTCAAAATCAAAATTATTATTTTTTTGGGTGGTGGTGGGGGTGGGGTGGGGGCAGGGCGGGGGGAGGGGGAGGGGATAGGAGTGAAAAAATAAAAATTTGAATTTGATAGTATTTTTAAAAAACAAAATTAATTTTTTTGGGGATTGGGGTGGGTGGGGGCTGGTAGGGGGGCTGGCCGGGAGTGGGGGGGAGGGGTAGGAGTTAAAAAATAAAAAATTTGAAGTTGAAAATATTTTTAAAAAGCAAAATTAATTTTTTGAGGAGGGGTTGGGGTTGGGGTTGGGGGGGGCTGGCCGGGGGTTAGGGTCAAGGATCTGGTGAAAAAATAAAATTTTGAAATTGAAAATATTTATTTAAATTGATGATTTTCCCAAAAAAAAGTAATTTGAAATTGGAGGTGAGTTATGGAAAATGTTTTCCTTAATTTTTGAAGGGAAGTCATTTTCCTTAATTTTGAGGAAAATGAGTTGATTTGGAAATCATTTTCCGAAACTTTTGTCCCAACCAAACATGTGGAAATTGGAAAACATTTTCCAGAAAATGTTTTCCTTCATACCAAACACACTCTCTGTCCCCTCAAGGTGGAATCTCACATTCAGAAGGCACTTGAATGATTGAGAAGTGGGTAGATTTGTTGAGTTATTACAAGTGCTTAGTGGTTTCTTAGGTTTATCTACAGGATCAGACACAATGAGGTGGGAACATGACAGTGATGACTAGTTCTTATTAAGAAGACTCTAGAGAAATGAAGTGGTGGAGCAACCAGGAAGGAGGGGACATACCAGGTCCTTGGAAACAGATTTGGAAGTGCAGTGTCCCAAACAAGGTGCACTTGGTTGGTGACCTGAAGAGCATGTCTCACTGATGAAAAATTGGAAAGGAGGGGCTTTCAGATGGTATCCAGATGTTTTGTTTTTGGGCTAGGAGAATGAAGAAACTAATAATCATCTTTTCTTCATTGGAAGATTGTATCACAGATCTGGTCTGTGTTTCCAAGTATATCTCGAGCAAATTGGGTAACGCCTGAACACATTGCTGACCTACTTAGCTGATGCATAAGGAGTGGAGGGAGGGAACAGAGTCAGAAGGGACGGTAAGATAATACCATATTGCATATAGTGGTCAGTATGGAGAGAAGAAACAACAGATGCTTTGAGGATATCTCTAACCCAATCTAGATAATCAAAGAAAATTGTATGAATATTTTGTATTTTTGATGTAAAGAAAGGGTTTAGAAATAGCAGAGCAGTTAGCAGATATTTTAGGATGTTTGTACATTTCTGAATTTTGCTCACCTGCACATGCAAATACTCTTTGATTTGTTACTTCTTAAAATTGGGAAATTGACAAGGTTTTCCACATGGTACAACACACGGCATGGAGTTTGGGCTGAAACAGCCCGTCATGTATCTAAGAATGTGAGAGCCGCTTTAATATAGAACTTTGGTTGGGTATGTCCGCTAGCTAGCCCTTTCAGTATTTGCGAGTTGCACACTTGTTCTGAATATAGCTCACCTGCACATCCATATACTCCTTTGATTTGTTACTTCTTGAAATTGAGAAATTGACAAGGTTTTCTACATGGTACACATGGCATGAAGTTTGGGCTGACACGGCCCATCACGTGTCTTTAAGAATGTGAACTTCCCTTTAATATAGAACTTTGTCTGGTATGTCTGTTAGCTAGCCCTTTCAGCATTTGCGAGTTGCACAGTTTTGTTCTGAATTCTGCTCACCTGCACATGCAAATATGCTTTGATTAGTTACTTCTTGAAATTGAGAAATTGACAAGGTTTTCCACATGATACACATGACATGAAGTTTTTTAGCTTGTCACTTGTCTAAGAATGTGAATGTGTCTCTTTAATATAGAACTTTGTCTTGTGTATCTGCTAGCTATCCCTTTCAACATTTGTGAGTTGCACACTTCTGTTCTGAATTTTGCTCACCTGCACATGCAAATACTCTTTGATTTGTTACTTCTTGAAATTGAGAAATTGACAAGATTTTTCACATGGTACACATGGCACTAATTTTGGGCTAAAACATCTGGTCATGTTACAAGAATGTGAAATGTCGCTTTAATATAGAACTTTGTCTGGTATGTCTGCTAGCTAGCCCTTTCAGCATTTGCATGTTGCACACTTCTGTTCTAAATTTCGCTCACCTGCACATGCAAATACTGGTTGATTTGTTACTTCTTGAAATTTAGAAATTTACAAGGTTTTCACATGGTACATATTTCATGAAGTATGGGCTGATACAGCCCGTCATGTGTCTAAGAATGTGAACGTCCCTTTAGTATAGAACTTTATCTGGTATGTCTGCTAGTTAGCCCTCCCCCATTTTCCTTCTTGAATGCCTCTCCTCATCCTAAAATGGAGACAAGAACACCAACTTGAATTTTCTTTACTTTAGTAGTCTTTTTTTTTCTTCATCTTGTTTGTGTTCATCTCTTGCTTGTTGCTCTTTTTGATAAGGTAATGTTTTAATTAATGATTGGAGAAATCCCATATACAAGCCATACACCAAAAAATAAAGAATGTAAACCAAAATATTGTTCTCTACGAAAGGAAAACCAATCATCTATAAAACAGGCACCTTATGGGTGGTGTCATCTTATTTGTATTCACGTCTTTGCTTGTTGCTTATGTAGTTTATACAATTGTTGTTTATGTTTTGATGCATCATTTCACTTCTTGTGGCTCTAATGATGCACTTGATTATATTGAACTAACAGGTTGGAGCAAAAGATCACCAGCGTTTCCAAGCATCTTATGCAATTTTGCTGAAGGCCCGGTTGACTGCACTAAAGAAGAGGGAGAGGAAGGACAAGAGGAAGGCTACTGATTCTGACAAAAAGATGGATATTTCGAAAAAGAAATCTGCTGCTGCTAAAGCCTCTACATGAAACTTTAGTCCTTTGGTTTATTCCCCCATTTTGTTTCTAGGATAGAGTTGTAGGATTTGAACCCCATCCATTTGGGGCGACAAGTCTGAAACTTCATTACAACTCCACTGCATAGAATGAAGAAAGGAGGTGTTTTTACTCAATTTGATTATTCACA</genome_strand>
        <mrna_strand>TTTGACCCATCGCTTCTCTTCATCGCTGTGTTGAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGATTACAGCCAGACCCATTCCTCAATGAACTGACGAGTATGTTTGAGCGAACTACTGAGCATGGTTCCGTTTGGGTTACGCTTAAACACT............................................................................................CTTCTGATAAATCTAAAGCCCAACGGAATAAGATGAAGACAGCTGGTGAAACTCTTGAATTTAAGTGCCTCATCCGAGCAACTGATGGGAAAAAGAATATTTCCACAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGCAAAAGATCACCAGCGTTTCCAAGCATCTTATGCAATTTTGCTGAAGGCCCGGTTGACTGCACTAAAGAAGAGGGAGAGGAAGGACAAGAGGAAGGCTACTGATTCTGACAAAAAGATGGATATTTCGAAAAAGAAATCTGCTGCTGCTAAAGCCTCTACATGAAACTTTAGTCCTTTGGTTTATTCCCCCATTTTGTTTCTAGGATAGAGTTGTAGGATTTGAACCCCATCCATTTGGGGCGACAAGTCTGAAACTTCATTACAACTCCACTGCATAGAATGAAGAAAGGAGGTGTTTTTACTCAATTTGATTATTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264799" ref_strand="+" ref_description="SGN-E264799 [cLEG-71-B2]">
      <seq>gaagttttggtttttgagttttgagatttgctgttcgaagatggtgcgattacagccagacccattcctcaatgaactgacgagtatgtttgagcgaactactgagcatggttccgtttgggttacgcttaaacactcttctgataaatctaaagcccaacggaataagatgaagacagctggtgaaactcttgaatttaagtgcctcatccgagcaactgatgggaaaaagaatatttccacaatggttggagcaaaagatcaccagcgtttccaagcatcttatgcaattttgctgaaggcccggttgactgcactaaagaagagggagaggaaggacaagaggaaggctactgattctgacaaaaagatggatatttcgaaaaagaaatctgctgctgctaaagcctctacatgaaactttagtcctttggtttattcccccattttgtttctaggatagagttgtangatttgaaccccatccatttggggcgacaagtctgaaacttcattacaactccactgcatagaatgaagaaaaggagtgtttttactcaatttgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="-" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103522" stop="94129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103222" g_stop="103180" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103179" i_stop="102415" i_length="765">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102414" g_stop="102321" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="137" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102320" i_stop="102229" i_length="92">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102228" g_stop="102119" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="247" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102118" i_stop="94751" i_length="7368">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94750" g_stop="94429" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="569" r_length="322" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="-" ref_id="SGN-E264799" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103222" e_stop="103180"/>
          <exon e_start="102414" e_stop="102321"/>
          <exon e_start="102228" e_stop="102119"/>
          <exon e_start="94750" e_stop="94429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATGGTAAGCGCTAACTTCAACTCATCAAAATCAATTGATCGCAATACTCTTTCGAATCAAATCTGGAAATCAAACAATGTAGAATTTTTTGATGTTAATTTTTCTTTGTTTACGCCGTTTTCAGCTTTATTTGATCTATATTTCCTTTTTGAGATTATGGGTTTCTGTAGAGTATAAATTCATGTTAGATTCTTTGTGTTCTTGAGTTGTTATGTATGTATCCCGAATCTCACTATATTGAATTGTGGAAATTAGTTAATACCAGTTTAAAATGGTGCTTATCGATTGAATTAACTAATTGGGGGTTGAGGTGATGGAAAACTTTCCCACTTAGCATTATACTCGAGTGCTGATGAATTTGATGTGTAGGTTAGAAAATTTGTTGAATCTGATGTTTTTACTTCATCCTTTAACTGGATAAAGGAGGAGGATTACATGGGTTGGGTTGATAGCCAGCGTAGAAATAAGCGAAATTACAGGAATCTTCTAAGTCTACACACTGGTTTCATCCTTGCTTTCTCTCCTGAGCACACACTCAAGCTACCCAACTACTGTATTTCTTCCTCCTTTATTCAGGTGGCACTGGTGAAGCATGCTCACATTGTTTATGTTAAGTAATCACATTGTGGAGTTCAATGTGCTTCCTATTTGTGGATACAAAATTATATGGCATTTTGCTTATTTTTGGGAAGTTTGAAAGAAGTGGCTTTGTCCATCTTTTTGGTAGAACATAAGTTGACAATTACTGATCTGAATTGGATTTGTCAGGTGCGATTACAGCCAGACCCATTCCTCAATGAACTGACGAGTATGTTTGAGCGAACTACTGAGCATGGTTCCGTTTGGGTTACGCTTAAACACTGTGAGTTTGCCTCTTCGTTGGTTTTCCTGTGTTTTGTGCTTTGTATTCTCTTTATGAGTAATACTGATTGAGCAATCTTGTCCTTTGTATAGCTTCTGATAAATCTAAAGCCCAACGGAATAAGATGAAGACAGCTGGTGAAACTCTTGAATTTAAGTGCCTCATCCGAGCAACTGATGGGAAAAAGAATATTTCCACAATGGTAATTATCACAATAGAAAGTCTCTTACCTTTTTCCATCACCTTCTTTTTGCAAGTCTTGTCGTTTTCCCCATTTTTTTGCTTTGTTGGGCACTATGTTCTCTGGAACATTGAGGGTGTTAGTTTGTTGTATGAATTATTTTTTAGCATAAGTTTAAATGTGCAAATATAGATAATTCTAGGTCCTGGCCTGTATGTTTGAGATTGAGAGCATCAAATTCAAAAAAAGGATGGTAGCCTTGTGGTGCATAGAGAATGGGAGTCGTGGTCCTTGTTTACTTGATTGATAACTAATAGGTATCGTACATGCTTGTAATACAATATTAGAGCACATAAAGGGACAATTTCTCATAAAAGGCAAACAAATTATGGATGCAACTCTTTTAGTCAGTGAACCTGTGGATTCTAGACTCGAAGGTGAAGATCCAGGGATCATGTGAAACCTAGCTATAGAGAACCCATTATGATCATGTCAACTGGGAGTTACTTCTCAACCTTCTTTAAAAAATGGGTTTTGGTGGAAGATGGTTAAAGTGGATGGTTTTTGTATCAATACTGTCCTGAATTCTAGTCATAGGAGAAATTGCTGGAATTTTCCCTCAGAGAAAGAGGACTCGGGGAGACCCCCCTCTCTTTGCCTTTTCATATTAGCTATGGAAGGTTTCAGTAGTATGATGAGAGGTACTATTCAGAACAGTGGATAAAAGGTTTCAGGATAGGCAATCAAGCAGGGGAAGAGATGTAGATTTCCTTTCATTATTGCTGATGATATAGTTGTTTTCTAAGATGCTAAAGCAGATCAGATCATGTACATCAGAATGATTTTGGTGATCTTTGGGCAATTTTTGGTCCATTTGTAAAATTGGAGGAAAGGTAGTAGTTTCCCTGTCAAAGAAGTTCCACAAATTCAATGCCTGTCCATGTTATAAGTTTCGATGATTTAACAAACTATGACATCTAGTTGGGGACCTGATCCCATGAGGGACTGAGAGTTTCAGGCAATGTGCAAAGGACAGTTGTAAAGCTGCAACTGCTGCCACAATTGCAGTGGTTGGTGCACCTTTTCAGAGGAATAGTACTCAGCCAATGGCGTTGCACTAGGTAGTTTGTCCATCTTATAATAGTCATCTTGTCAAGGGACGTTTCCTAATTTTTGAGTTGAAGATTTCCATACGGCAAAATCCACTCTCAAAAAGAAATATTCTCATATGCATCAAGAGATCTGATCGAGTGATCTACTGTTCCCTTTAGTTGTTATTTTAGTTTATCGTCTCGTGTTTATACAGTGTAAGATCTGTTCATATGTTATAAAGGAATCAGATCATTTCAGTTGTAATCGTTGTTAAAAGTTTGAGTTGTAGCTAGAGTTAGCTATGTCGTGTTCTTGAAGTCTACATTAACTTAGCTTGTTGGCGTAGTAGGCAATAGAGGTATTACTTTGTTTATGAGTAACAAAGCTGTTACGAAAGGAGAAGGGATTAAGAGTTCATTTCCTAGGTTGCAAGAGTTTGTAATCGGGATCTTAACTCTTTGAAGTAATGGAATTGGCGAAATCCTGTGAGACAGGTTGTGATTTTCTCCTTCCTTAAGCAAGGGGGTTAACACGTAAACATTTTGTGTTCTTTATTTTAAGTTTTTCTTTCTGCACTGTTCTTACTATGTGAACGGACTTGGTCCATTGACTTGTGGTGGACGCATGTAAGTCATCAGTCCAACATCTTGAGTTGTAAAATTGAGAATTTCCCGACCAACTTACTTGGGGATGCCCCTTGGAAACAATCATAAGGAGCTAGAAGTTTGGGATGAGATTATTGAAAAAATTAGTAACCAAACTCAAAATGTGTTGAGCGCTCGACTTGCTTTATGTGCGCTTCGGTGTCGTCACCAGTGTTCTAAGACATATTTTTCCTTGCCAATGTGTCTCTGCCGAAGAGGTGACACTAAACAATTGATATTTCACTTAATCACATTTTTTTTGAAAAGGTACTTTATCATTATTTTTTTCGATTTCTTCAGTCATATATTTGTTATTTGTGTTTATAATTATTCGTCTTGGACTCAGCATATATATTTGTAATTTTTTCTCCCTTTGTGCCTTTTTTCATTAAAGCCCATTCTTTGTTTGCACATAAAGGTCCAATGGGCCTTAGAGTTTTTTTGCGCTTTTCGCGTTTGATAACACTTGAAAAACTAGCCAATTGGAAAGCCCGATGTTTATCTCTTGGAGGAAGTAGTACTCTTATGAACTCAGTATTGGACTCATTGCCAACACATGTCATGTCCTTATTTCTAATGCCTTCAGGTGGAGGATACCATACAAGTTGAGGACTTTCTATGTTAGGTAATAAGGAGGGCAGAGGTATTCACTAAGTGAAATGCCAAACTGCTCAGCTTATGGTTGACTTGGTATTAGGAATCTGGGGCTTCAAAACAGATGCTTATTGACAAAATGGAGGTTTGTTGGTGAGGATCATGCACTCTGGAAGGAAGTAACTATAAAAATATGGGCAGAGTAACTATTTGTGTTCTAATATGGTCTATGTTGGCTGGGAATATAGACTGTAGTGTGTGGAATGACACCTAGATCCTTTTTCCGAGAGATAAATGGATTGGACTCGAGCCTTTAATGAGCTCATTTTCGGAACTGTTCTCATTTTGTAGCAACTCTGAAGCATCAATAGTTGACACTCTGGGTGTGTTTGTGTCACGACCCAAACCGGGTTGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATGTAATAACAGTAGAAAATAATGCGGAAGACTTAACTCATTAATAAAATCAATTCAATAACTATCAATATTCAACATCTATTATTCCCAAAACCTGGAAGTCATCATCACAAGAACATCTACGATCAAATGACTAAACTAAGAGTATTCTAAAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGTAGTAAGACTGGCTTGAATTACTGTTGAGTTGAAGACGATGGCACGTTTGCTGCACTCCACAAATAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGGGAACAGTATATATCAATATTATCGTAAATCAACTATAAAACTCAACATGTAGCCACAACAAGTATTATAATCATCAATAAGTACCATCAAGTTCATCCATGAGGGCTCAAGCCTCAACACCATACTCATTTGGGAATTATGTTCGTTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTATTCCTCTTGTGTCGGTACGTGACACTCTGATCCCCTATATCTACGTGTCGGTTCGTGACACCCGATCCCCTACATCATTCTGTAAATCATCAGGCCTTCTCTATACCAAGGTATCATCAATCCTATTACTTTAATTCATCAAGCCTTCTTCTATACCAAGGCATCATCATTAATAATGTATATTAAAGTTTCCTTTCAAGATTTGGGATTCAATATTTTCATCATGCTTATCTTATCACAATCACATAATCATATTCACGCAAACATACAATTAAGCTTATAGTAGGGTTTACAATACTACCAATACATATCATTCTCTATTAAGAGTTTACTATGAAAGCATGAAAACCATAACCTACCTCCACCGAAGAGTTGAATCAAGCAAGAATTTTCCCAAAGCTTTGTTTCTCCCTTCTCGTTCGATTTTCTCTCTCTCTCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATACCCCACTAATTAACTTAGGGTTACCTCTTTTAACCCCTCAAGAATTTGAGTTATTAATATAACCCCACGAACTTTATAATTAAGGCAAGAATAGTCAAAAACGTCCCTTAAAACTTAACCAGAAATCCGACTCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAGAGTTCAGAGACCCAAATTTCCACCAAGGGTCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCCTGCCATTCCGTCACAAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCCTCGTGCCCTTGACGGTCCGTCGTGGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAATTGAAGTCTGTTGCTCAAAACGACTAAACGGGTCGTTACAGTTTGGTATGGAGGAAAATGTTTTCCATGGAAAATGTTTTCCTAGAAAATGTTTTCCTGGAAAACAAGTAAATTTTGGACTTATTTTCTCATGTTTGGTTGGTGAGTAGAAAATATTTTCTGGATATGATTTTTAGTGTTTGATTTATGAATGAAAAATGTTTTTGAGAGACATTTTTTATTTTTACTAGAGTAAAAAATAATTTATGATATTGAAAATATTTTTCAAAATCAAAATTATTATTTTTTTGGGTGGTGGTGGGGGTGGGGTGGGGGCAGGGCGGGGGGAGGGGGAGGGGATAGGAGTGAAAAAATAAAAATTTGAATTTGATAGTATTTTTAAAAAACAAAATTAATTTTTTTGGGGATTGGGGTGGGTGGGGGCTGGTAGGGGGGCTGGCCGGGAGTGGGGGGGAGGGGTAGGAGTTAAAAAATAAAAAATTTGAAGTTGAAAATATTTTTAAAAAGCAAAATTAATTTTTTGAGGAGGGGTTGGGGTTGGGGTTGGGGGGGGCTGGCCGGGGGTTAGGGTCAAGGATCTGGTGAAAAAATAAAATTTTGAAATTGAAAATATTTATTTAAATTGATGATTTTCCCAAAAAAAAGTAATTTGAAATTGGAGGTGAGTTATGGAAAATGTTTTCCTTAATTTTTGAAGGGAAGTCATTTTCCTTAATTTTGAGGAAAATGAGTTGATTTGGAAATCATTTTCCGAAACTTTTGTCCCAACCAAACATGTGGAAATTGGAAAACATTTTCCAGAAAATGTTTTCCTTCATACCAAACACACTCTCTGTCCCCTCAAGGTGGAATCTCACATTCAGAAGGCACTTGAATGATTGAGAAGTGGGTAGATTTGTTGAGTTATTACAAGTGCTTAGTGGTTTCTTAGGTTTATCTACAGGATCAGACACAATGAGGTGGGAACATGACAGTGATGACTAGTTCTTATTAAGAAGACTCTAGAGAAATGAAGTGGTGGAGCAACCAGGAAGGAGGGGACATACCAGGTCCTTGGAAACAGATTTGGAAGTGCAGTGTCCCAAACAAGGTGCACTTGGTTGGTGACCTGAAGAGCATGTCTCACTGATGAAAAATTGGAAAGGAGGGGCTTTCAGATGGTATCCAGATGTTTTGTTTTTGGGCTAGGAGAATGAAGAAACTAATAATCATCTTTTCTTCATTGGAAGATTGTATCACAGATCTGGTCTGTGTTTCCAAGTATATCTCGAGCAAATTGGGTAACGCCTGAACACATTGCTGACCTACTTAGCTGATGCATAAGGAGTGGAGGGAGGGAACAGAGTCAGAAGGGACGGTAAGATAATACCATATTGCATATAGTGGTCAGTATGGAGAGAAGAAACAACAGATGCTTTGAGGATATCTCTAACCCAATCTAGATAATCAAAGAAAATTGTATGAATATTTTGTATTTTTGATGTAAAGAAAGGGTTTAGAAATAGCAGAGCAGTTAGCAGATATTTTAGGATGTTTGTACATTTCTGAATTTTGCTCACCTGCACATGCAAATACTCTTTGATTTGTTACTTCTTAAAATTGGGAAATTGACAAGGTTTTCCACATGGTACAACACACGGCATGGAGTTTGGGCTGAAACAGCCCGTCATGTATCTAAGAATGTGAGAGCCGCTTTAATATAGAACTTTGGTTGGGTATGTCCGCTAGCTAGCCCTTTCAGTATTTGCGAGTTGCACACTTGTTCTGAATATAGCTCACCTGCACATCCATATACTCCTTTGATTTGTTACTTCTTGAAATTGAGAAATTGACAAGGTTTTCTACATGGTACACATGGCATGAAGTTTGGGCTGACACGGCCCATCACGTGTCTTTAAGAATGTGAACTTCCCTTTAATATAGAACTTTGTCTGGTATGTCTGTTAGCTAGCCCTTTCAGCATTTGCGAGTTGCACAGTTTTGTTCTGAATTCTGCTCACCTGCACATGCAAATATGCTTTGATTAGTTACTTCTTGAAATTGAGAAATTGACAAGGTTTTCCACATGATACACATGACATGAAGTTTTTTAGCTTGTCACTTGTCTAAGAATGTGAATGTGTCTCTTTAATATAGAACTTTGTCTTGTGTATCTGCTAGCTATCCCTTTCAACATTTGTGAGTTGCACACTTCTGTTCTGAATTTTGCTCACCTGCACATGCAAATACTCTTTGATTTGTTACTTCTTGAAATTGAGAAATTGACAAGATTTTTCACATGGTACACATGGCACTAATTTTGGGCTAAAACATCTGGTCATGTTACAAGAATGTGAAATGTCGCTTTAATATAGAACTTTGTCTGGTATGTCTGCTAGCTAGCCCTTTCAGCATTTGCATGTTGCACACTTCTGTTCTAAATTTCGCTCACCTGCACATGCAAATACTGGTTGATTTGTTACTTCTTGAAATTTAGAAATTTACAAGGTTTTCACATGGTACATATTTCATGAAGTATGGGCTGATACAGCCCGTCATGTGTCTAAGAATGTGAACGTCCCTTTAGTATAGAACTTTATCTGGTATGTCTGCTAGTTAGCCCTCCCCCATTTTCCTTCTTGAATGCCTCTCCTCATCCTAAAATGGAGACAAGAACACCAACTTGAATTTTCTTTACTTTAGTAGTCTTTTTTTTTCTTCATCTTGTTTGTGTTCATCTCTTGCTTGTTGCTCTTTTTGATAAGGTAATGTTTTAATTAATGATTGGAGAAATCCCATATACAAGCCATACACCAAAAAATAAAGAATGTAAACCAAAATATTGTTCTCTACGAAAGGAAAACCAATCATCTATAAAACAGGCACCTTATGGGTGGTGTCATCTTATTTGTATTCACGTCTTTGCTTGTTGCTTATGTAGTTTATACAATTGTTGTTTATGTTTTGATGCATCATTTCACTTCTTGTGGCTCTAATGATGCACTTGATTATATTGAACTAACAGGTTGGAGCAAAAGATCACCAGCGTTTCCAAGCATCTTATGCAATTTTGCTGAAGGCCCGGTTGACTGCACTAAAGAAGAGGGAGAGGAAGGACAAGAGGAAGGCTACTGATTCTGACAAAAAGATGGATATTTCGAAAAAGAAATCTGCTGCTGCTAAAGCCTCTACATGAAACTTTAGTCCTTTGGTTTATTCCCCCATTTTGTTTCTAGGATAGAGTTGTAGGATTTGAACCCCATCCATTTGGGGCGACAAGTCTGAAACTTCATTACAACTCCACTGCATAGAATGAAGAAAGGAGGTGTTTTTACTCAATTTGATTA</genome_strand>
        <mrna_strand>GAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGATTACAGCCAGACCCATTCCTCAATGAACTGACGAGTATGTTTGAGCGAACTACTGAGCATGGTTCCGTTTGGGTTACGCTTAAACACT............................................................................................CTTCTGATAAATCTAAAGCCCAACGGAATAAGATGAAGACAGCTGGTGAAACTCTTGAATTTAAGTGCCTCATCCGAGCAACTGATGGGAAAAAGAATATTTCCACAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGCAAAAGATCACCAGCGTTTCCAAGCATCTTATGCAATTTTGCTGAAGGCCCGGTTGACTGCACTAAAGAAGAGGGAGAGGAAGGACAAGAGGAAGGCTACTGATTCTGACAAAAAGATGGATATTTCGAAAAAGAAATCTGCTGCTGCTAAAGCCTCTACATGAAACTTTAGTCCTTTGGTTTATTCCCCCATTTTGTTTCTAGGATAGAGTTGTANGATTTGAACCCCATCCATTTGGGGCGACAAGTCTGAAACTTCATTACAACTCCACTGCATAGAATGAAGAAAAGGAGTGTTTTTACTCAATTTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540364" ref_strand="+" ref_description="SGN-E540364 [TUS-60-J15]">
      <seq>atgcaattttgctgaaggcccggttgactgcactaaagaagagggagaggaaggacaagaggaaggctactgattctgacaaaaagatggatatttcgaaaaagaaatctgctgctgctaaagcctctacatgaaactttagtcctttggtttattcccccattttgtttctaggatagagttgtaggatttgaaccccatccatttggggcgacaagtctgaaacttcattacaactccactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="-" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95013" stop="94170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94713" g_stop="94470" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="-" ref_id="SGN-E540364" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94713" e_stop="94470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCAATTTTGCTGAAGGCCCGGTTGACTGCACTAAAGAAGAGGGAGAGGAAGGACAAGAGGAAGGCTACTGATTCTGACAAAAAGATGGATATTTCGAAAAAGAAATCTGCTGCTGCTAAAGCCTCTACATGAAACTTTAGTCCTTTGGTTTATTCCCCCATTTTGTTTCTAGGATAGAGTTGTAGGATTTGAACCCCATCCATTTGGGGCGACAAGTCTGAAACTTCATTACAACTCCACTG</genome_strand>
        <mrna_strand>ATGCAATTTTGCTGAAGGCCCGGTTGACTGCACTAAAGAAGAGGGAGAGGAAGGACAAGAGGAAGGCTACTGATTCTGACAAAAAGATGGATATTTCGAAAAAGAAATCTGCTGCTGCTAAAGCCTCTACATGAAACTTTAGTCCTTTGGTTTATTCCCCCATTTTGTTTCTAGGATAGAGTTGTAGGATTTGAACCCCATCCATTTGGGGCGACAAGTCTGAAACTTCATTACAACTCCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297448" ref_strand="+" ref_description="SGN-E297448 [cLEW-13-J3]">
      <seq>aagtttcatacttgtcgccccaaatggatggggttcaaatgctaccaactctatcctagaaacaaaatgggggaataaaccaaaggactaaagtttcatgtagaggctttagcagcagcagatttctttttcgaaatatccatctttttgtcagaatcagtagccttcctcttgtccttcctctccctcttctttagtgcaggcaaccgggccttcagcaaaattgcataagatgcttggaaacgctggtgatcttttgctcccacctgttagttcaatataatcaagtgcatcattagagccacaagaagtgaaatgatgcatcaaaacataaacaacaattgtataaactacataagcaacaagcaaagacgtgaatacaaataagatgacaccacccataaggtgagcgaaatttataacagaagtgtgcaacatgcaaatgctgaaagggctagctagcagacataccagacaaagttctatattaaagcgacatttcacattcttgtaacatgaccagatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94186" stop="95748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94486" g_stop="94889" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94890" i_stop="95323" i_length="434">
            <donor d_prob="0.774" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95324" g_stop="95448" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="530" r_length="125" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E297448" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94486" e_stop="94889"/>
          <exon e_start="95324" e_stop="95448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTCAGACTTGTCGCCCCAAATGGATGGGGTTCAAATCCTA-CAACTCTATCCTAGAAACAAAATGGGGGAATAAACCAAAGGACTAAAGTTTCATGTAGAGGCTTTAGCAGCAGCAGATTTCTTTTTCGAAATATCCATCTTTTTGTCAGAATCAGTAGCCTTCCTCTTGTCCTTCCTCTCCCTCTTCTTTAGTGCAGTCAACCGGGCCTTCAGCAAAATTGCATAAGATGCTTGGAAACGCTGGTGATCTTTTGCTCCAACCTGTTAGTTCAATATAATCAAGTGCATCATTAGAGCCACAAGAAGTGAAATGATGCATCAAAACATAAACAACAATTGTATAAACTACATAAGCAACAAGCAAAGACGTGAATACAAATAAGATGACACCACCCATAAGGTGCCTGTTTTATAGATGATTGGTTTTCCTTTCGTAGAGAACAATATTTTGGTTTACATTCTTTATTTTTTGGTGTATGGCTTGTATATGGGATTTCTCCAATCATTAATTAAAACATTACCTTATCAAAAAGAGCAACAAGCAAGAGATGAACACAAACAAGATGAAGAAAAAAAAAGACTACTAAAGTAAAGAAAATTCAAGTTGGTGTTCTTGTCTCCATTTTAGGATGAGGAGAGGCATTCAAGAAGGAAAATGGGGGAGGGCTAACTAGCAGACATACCAGATAAAGTTCTATACTAAAGGGACGTTCACATTCTTAGACACATGACGGGCTGTATCAGCCCATACTTCATGAAATATGTACCATGTGAAAACCTTGTAAATTTCTAAATTTCAAGAAGTAACAAATCAACCAGTATTTGCATGTGCAGGTGAGCGAAATTTAGAACAGAAGTGTGCAACATGCAAATGCTGAAAGGGCTAGCTAGCAGACATACCAGACAAAGTTCTATATTAAAGCGACATTTCACATTCTTGTAACATGACCAGATGTTTT</genome_strand>
        <mrna_strand>AAGTTTCATACTTGTCGCCCCAAATGGATGGGGTTCAAATGCTACCAACTCTATCCTAGAAACAAAATGGGGGAATAAACCAAAGGACTAAAGTTTCATGTAGAGGCTTTAGCAGCAGCAGATTTCTTTTTCGAAATATCCATCTTTTTGTCAGAATCAGTAGCCTTCCTCTTGTCCTTCCTCTCCCTCTTCTTTAGTGCAGGCAACCGGGCCTTCAGCAAAATTGCATAAGATGCTTGGAAACGCTGGTGATCTTTTGCTCCCACCTGTTAGTTCAATATAATCAAGTGCATCATTAGAGCCACAAGAAGTGAAATGATGCATCAAAACATAAACAACAATTGTATAAACTACATAAGCAACAAGCAAAGACGTGAATACAAATAAGATGACACCACCCATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCGAAATTTATAACAGAAGTGTGCAACATGCAAATGCTGAAAGGGCTAGCTAGCAGACATACCAGACAAAGTTCTATATTAAAGCGACATTTCACATTCTTGTAACATGACCAGATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308642" ref_strand="+" ref_description="SGN-E308642 [cLEZ-13-C15]">
      <seq>tttctttgacccatcgcttctcttcatcgctgtgttgaagttttggtttttgagttttgagatttgctgttcgaagatggtgcgattacagccagacccattcctcaatgaactgacgagtatgtttgagcgaactactgagcatggttccgtttgggttacgcttaaacactcttctgataaatctaaagcccaacggaataagatgaagacagctggtgaaactcttgaatttaagtgcctcatccgagcaactgatgggaaaaagaatatttccacaatggttggagcaaaagatcaccagcgtttccaagcatcttatgcaattttgctgaaggcccggttgactgcactaaagaagagggagaggaaggacaagaggaaggctactgattctgacaaaaagatggatatttcgaaaaagaaatctgctgctgctaaagcctctacatgaaactttagtcctttggtttattcccccattttgtttctaggatagagttgtaggatttgaaccccatccatttggggcgacaagtctgaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="-" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103558" stop="94187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103258" g_stop="103180" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103179" i_stop="102415" i_length="765">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102414" g_stop="102321" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="173" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102320" i_stop="102229" i_length="92">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102228" g_stop="102119" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="283" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102118" i_stop="94751" i_length="7368">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94750" g_stop="94487" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="547" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="-" ref_id="SGN-E308642" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103258" e_stop="103180"/>
          <exon e_start="102414" e_stop="102321"/>
          <exon e_start="102228" e_stop="102119"/>
          <exon e_start="94750" e_stop="94487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTGACCCATCGCTTCTCTTCATCGCTGTGTTGAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATGGTAAGCGCTAACTTCAACTCATCAAAATCAATTGATCGCAATACTCTTTCGAATCAAATCTGGAAATCAAACAATGTAGAATTTTTTGATGTTAATTTTTCTTTGTTTACGCCGTTTTCAGCTTTATTTGATCTATATTTCCTTTTTGAGATTATGGGTTTCTGTAGAGTATAAATTCATGTTAGATTCTTTGTGTTCTTGAGTTGTTATGTATGTATCCCGAATCTCACTATATTGAATTGTGGAAATTAGTTAATACCAGTTTAAAATGGTGCTTATCGATTGAATTAACTAATTGGGGGTTGAGGTGATGGAAAACTTTCCCACTTAGCATTATACTCGAGTGCTGATGAATTTGATGTGTAGGTTAGAAAATTTGTTGAATCTGATGTTTTTACTTCATCCTTTAACTGGATAAAGGAGGAGGATTACATGGGTTGGGTTGATAGCCAGCGTAGAAATAAGCGAAATTACAGGAATCTTCTAAGTCTACACACTGGTTTCATCCTTGCTTTCTCTCCTGAGCACACACTCAAGCTACCCAACTACTGTATTTCTTCCTCCTTTATTCAGGTGGCACTGGTGAAGCATGCTCACATTGTTTATGTTAAGTAATCACATTGTGGAGTTCAATGTGCTTCCTATTTGTGGATACAAAATTATATGGCATTTTGCTTATTTTTGGGAAGTTTGAAAGAAGTGGCTTTGTCCATCTTTTTGGTAGAACATAAGTTGACAATTACTGATCTGAATTGGATTTGTCAGGTGCGATTACAGCCAGACCCATTCCTCAATGAACTGACGAGTATGTTTGAGCGAACTACTGAGCATGGTTCCGTTTGGGTTACGCTTAAACACTGTGAGTTTGCCTCTTCGTTGGTTTTCCTGTGTTTTGTGCTTTGTATTCTCTTTATGAGTAATACTGATTGAGCAATCTTGTCCTTTGTATAGCTTCTGATAAATCTAAAGCCCAACGGAATAAGATGAAGACAGCTGGTGAAACTCTTGAATTTAAGTGCCTCATCCGAGCAACTGATGGGAAAAAGAATATTTCCACAATGGTAATTATCACAATAGAAAGTCTCTTACCTTTTTCCATCACCTTCTTTTTGCAAGTCTTGTCGTTTTCCCCATTTTTTTGCTTTGTTGGGCACTATGTTCTCTGGAACATTGAGGGTGTTAGTTTGTTGTATGAATTATTTTTTAGCATAAGTTTAAATGTGCAAATATAGATAATTCTAGGTCCTGGCCTGTATGTTTGAGATTGAGAGCATCAAATTCAAAAAAAGGATGGTAGCCTTGTGGTGCATAGAGAATGGGAGTCGTGGTCCTTGTTTACTTGATTGATAACTAATAGGTATCGTACATGCTTGTAATACAATATTAGAGCACATAAAGGGACAATTTCTCATAAAAGGCAAACAAATTATGGATGCAACTCTTTTAGTCAGTGAACCTGTGGATTCTAGACTCGAAGGTGAAGATCCAGGGATCATGTGAAACCTAGCTATAGAGAACCCATTATGATCATGTCAACTGGGAGTTACTTCTCAACCTTCTTTAAAAAATGGGTTTTGGTGGAAGATGGTTAAAGTGGATGGTTTTTGTATCAATACTGTCCTGAATTCTAGTCATAGGAGAAATTGCTGGAATTTTCCCTCAGAGAAAGAGGACTCGGGGAGACCCCCCTCTCTTTGCCTTTTCATATTAGCTATGGAAGGTTTCAGTAGTATGATGAGAGGTACTATTCAGAACAGTGGATAAAAGGTTTCAGGATAGGCAATCAAGCAGGGGAAGAGATGTAGATTTCCTTTCATTATTGCTGATGATATAGTTGTTTTCTAAGATGCTAAAGCAGATCAGATCATGTACATCAGAATGATTTTGGTGATCTTTGGGCAATTTTTGGTCCATTTGTAAAATTGGAGGAAAGGTAGTAGTTTCCCTGTCAAAGAAGTTCCACAAATTCAATGCCTGTCCATGTTATAAGTTTCGATGATTTAACAAACTATGACATCTAGTTGGGGACCTGATCCCATGAGGGACTGAGAGTTTCAGGCAATGTGCAAAGGACAGTTGTAAAGCTGCAACTGCTGCCACAATTGCAGTGGTTGGTGCACCTTTTCAGAGGAATAGTACTCAGCCAATGGCGTTGCACTAGGTAGTTTGTCCATCTTATAATAGTCATCTTGTCAAGGGACGTTTCCTAATTTTTGAGTTGAAGATTTCCATACGGCAAAATCCACTCTCAAAAAGAAATATTCTCATATGCATCAAGAGATCTGATCGAGTGATCTACTGTTCCCTTTAGTTGTTATTTTAGTTTATCGTCTCGTGTTTATACAGTGTAAGATCTGTTCATATGTTATAAAGGAATCAGATCATTTCAGTTGTAATCGTTGTTAAAAGTTTGAGTTGTAGCTAGAGTTAGCTATGTCGTGTTCTTGAAGTCTACATTAACTTAGCTTGTTGGCGTAGTAGGCAATAGAGGTATTACTTTGTTTATGAGTAACAAAGCTGTTACGAAAGGAGAAGGGATTAAGAGTTCATTTCCTAGGTTGCAAGAGTTTGTAATCGGGATCTTAACTCTTTGAAGTAATGGAATTGGCGAAATCCTGTGAGACAGGTTGTGATTTTCTCCTTCCTTAAGCAAGGGGGTTAACACGTAAACATTTTGTGTTCTTTATTTTAAGTTTTTCTTTCTGCACTGTTCTTACTATGTGAACGGACTTGGTCCATTGACTTGTGGTGGACGCATGTAAGTCATCAGTCCAACATCTTGAGTTGTAAAATTGAGAATTTCCCGACCAACTTACTTGGGGATGCCCCTTGGAAACAATCATAAGGAGCTAGAAGTTTGGGATGAGATTATTGAAAAAATTAGTAACCAAACTCAAAATGTGTTGAGCGCTCGACTTGCTTTATGTGCGCTTCGGTGTCGTCACCAGTGTTCTAAGACATATTTTTCCTTGCCAATGTGTCTCTGCCGAAGAGGTGACACTAAACAATTGATATTTCACTTAATCACATTTTTTTTGAAAAGGTACTTTATCATTATTTTTTTCGATTTCTTCAGTCATATATTTGTTATTTGTGTTTATAATTATTCGTCTTGGACTCAGCATATATATTTGTAATTTTTTCTCCCTTTGTGCCTTTTTTCATTAAAGCCCATTCTTTGTTTGCACATAAAGGTCCAATGGGCCTTAGAGTTTTTTTGCGCTTTTCGCGTTTGATAACACTTGAAAAACTAGCCAATTGGAAAGCCCGATGTTTATCTCTTGGAGGAAGTAGTACTCTTATGAACTCAGTATTGGACTCATTGCCAACACATGTCATGTCCTTATTTCTAATGCCTTCAGGTGGAGGATACCATACAAGTTGAGGACTTTCTATGTTAGGTAATAAGGAGGGCAGAGGTATTCACTAAGTGAAATGCCAAACTGCTCAGCTTATGGTTGACTTGGTATTAGGAATCTGGGGCTTCAAAACAGATGCTTATTGACAAAATGGAGGTTTGTTGGTGAGGATCATGCACTCTGGAAGGAAGTAACTATAAAAATATGGGCAGAGTAACTATTTGTGTTCTAATATGGTCTATGTTGGCTGGGAATATAGACTGTAGTGTGTGGAATGACACCTAGATCCTTTTTCCGAGAGATAAATGGATTGGACTCGAGCCTTTAATGAGCTCATTTTCGGAACTGTTCTCATTTTGTAGCAACTCTGAAGCATCAATAGTTGACACTCTGGGTGTGTTTGTGTCACGACCCAAACCGGGTTGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATGTAATAACAGTAGAAAATAATGCGGAAGACTTAACTCATTAATAAAATCAATTCAATAACTATCAATATTCAACATCTATTATTCCCAAAACCTGGAAGTCATCATCACAAGAACATCTACGATCAAATGACTAAACTAAGAGTATTCTAAAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGTAGTAAGACTGGCTTGAATTACTGTTGAGTTGAAGACGATGGCACGTTTGCTGCACTCCACAAATAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGGGAACAGTATATATCAATATTATCGTAAATCAACTATAAAACTCAACATGTAGCCACAACAAGTATTATAATCATCAATAAGTACCATCAAGTTCATCCATGAGGGCTCAAGCCTCAACACCATACTCATTTGGGAATTATGTTCGTTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTATTCCTCTTGTGTCGGTACGTGACACTCTGATCCCCTATATCTACGTGTCGGTTCGTGACACCCGATCCCCTACATCATTCTGTAAATCATCAGGCCTTCTCTATACCAAGGTATCATCAATCCTATTACTTTAATTCATCAAGCCTTCTTCTATACCAAGGCATCATCATTAATAATGTATATTAAAGTTTCCTTTCAAGATTTGGGATTCAATATTTTCATCATGCTTATCTTATCACAATCACATAATCATATTCACGCAAACATACAATTAAGCTTATAGTAGGGTTTACAATACTACCAATACATATCATTCTCTATTAAGAGTTTACTATGAAAGCATGAAAACCATAACCTACCTCCACCGAAGAGTTGAATCAAGCAAGAATTTTCCCAAAGCTTTGTTTCTCCCTTCTCGTTCGATTTTCTCTCTCTCTCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATACCCCACTAATTAACTTAGGGTTACCTCTTTTAACCCCTCAAGAATTTGAGTTATTAATATAACCCCACGAACTTTATAATTAAGGCAAGAATAGTCAAAAACGTCCCTTAAAACTTAACCAGAAATCCGACTCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAGAGTTCAGAGACCCAAATTTCCACCAAGGGTCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCCTGCCATTCCGTCACAAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCCTCGTGCCCTTGACGGTCCGTCGTGGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAATTGAAGTCTGTTGCTCAAAACGACTAAACGGGTCGTTACAGTTTGGTATGGAGGAAAATGTTTTCCATGGAAAATGTTTTCCTAGAAAATGTTTTCCTGGAAAACAAGTAAATTTTGGACTTATTTTCTCATGTTTGGTTGGTGAGTAGAAAATATTTTCTGGATATGATTTTTAGTGTTTGATTTATGAATGAAAAATGTTTTTGAGAGACATTTTTTATTTTTACTAGAGTAAAAAATAATTTATGATATTGAAAATATTTTTCAAAATCAAAATTATTATTTTTTTGGGTGGTGGTGGGGGTGGGGTGGGGGCAGGGCGGGGGGAGGGGGAGGGGATAGGAGTGAAAAAATAAAAATTTGAATTTGATAGTATTTTTAAAAAACAAAATTAATTTTTTTGGGGATTGGGGTGGGTGGGGGCTGGTAGGGGGGCTGGCCGGGAGTGGGGGGGAGGGGTAGGAGTTAAAAAATAAAAAATTTGAAGTTGAAAATATTTTTAAAAAGCAAAATTAATTTTTTGAGGAGGGGTTGGGGTTGGGGTTGGGGGGGGCTGGCCGGGGGTTAGGGTCAAGGATCTGGTGAAAAAATAAAATTTTGAAATTGAAAATATTTATTTAAATTGATGATTTTCCCAAAAAAAAGTAATTTGAAATTGGAGGTGAGTTATGGAAAATGTTTTCCTTAATTTTTGAAGGGAAGTCATTTTCCTTAATTTTGAGGAAAATGAGTTGATTTGGAAATCATTTTCCGAAACTTTTGTCCCAACCAAACATGTGGAAATTGGAAAACATTTTCCAGAAAATGTTTTCCTTCATACCAAACACACTCTCTGTCCCCTCAAGGTGGAATCTCACATTCAGAAGGCACTTGAATGATTGAGAAGTGGGTAGATTTGTTGAGTTATTACAAGTGCTTAGTGGTTTCTTAGGTTTATCTACAGGATCAGACACAATGAGGTGGGAACATGACAGTGATGACTAGTTCTTATTAAGAAGACTCTAGAGAAATGAAGTGGTGGAGCAACCAGGAAGGAGGGGACATACCAGGTCCTTGGAAACAGATTTGGAAGTGCAGTGTCCCAAACAAGGTGCACTTGGTTGGTGACCTGAAGAGCATGTCTCACTGATGAAAAATTGGAAAGGAGGGGCTTTCAGATGGTATCCAGATGTTTTGTTTTTGGGCTAGGAGAATGAAGAAACTAATAATCATCTTTTCTTCATTGGAAGATTGTATCACAGATCTGGTCTGTGTTTCCAAGTATATCTCGAGCAAATTGGGTAACGCCTGAACACATTGCTGACCTACTTAGCTGATGCATAAGGAGTGGAGGGAGGGAACAGAGTCAGAAGGGACGGTAAGATAATACCATATTGCATATAGTGGTCAGTATGGAGAGAAGAAACAACAGATGCTTTGAGGATATCTCTAACCCAATCTAGATAATCAAAGAAAATTGTATGAATATTTTGTATTTTTGATGTAAAGAAAGGGTTTAGAAATAGCAGAGCAGTTAGCAGATATTTTAGGATGTTTGTACATTTCTGAATTTTGCTCACCTGCACATGCAAATACTCTTTGATTTGTTACTTCTTAAAATTGGGAAATTGACAAGGTTTTCCACATGGTACAACACACGGCATGGAGTTTGGGCTGAAACAGCCCGTCATGTATCTAAGAATGTGAGAGCCGCTTTAATATAGAACTTTGGTTGGGTATGTCCGCTAGCTAGCCCTTTCAGTATTTGCGAGTTGCACACTTGTTCTGAATATAGCTCACCTGCACATCCATATACTCCTTTGATTTGTTACTTCTTGAAATTGAGAAATTGACAAGGTTTTCTACATGGTACACATGGCATGAAGTTTGGGCTGACACGGCCCATCACGTGTCTTTAAGAATGTGAACTTCCCTTTAATATAGAACTTTGTCTGGTATGTCTGTTAGCTAGCCCTTTCAGCATTTGCGAGTTGCACAGTTTTGTTCTGAATTCTGCTCACCTGCACATGCAAATATGCTTTGATTAGTTACTTCTTGAAATTGAGAAATTGACAAGGTTTTCCACATGATACACATGACATGAAGTTTTTTAGCTTGTCACTTGTCTAAGAATGTGAATGTGTCTCTTTAATATAGAACTTTGTCTTGTGTATCTGCTAGCTATCCCTTTCAACATTTGTGAGTTGCACACTTCTGTTCTGAATTTTGCTCACCTGCACATGCAAATACTCTTTGATTTGTTACTTCTTGAAATTGAGAAATTGACAAGATTTTTCACATGGTACACATGGCACTAATTTTGGGCTAAAACATCTGGTCATGTTACAAGAATGTGAAATGTCGCTTTAATATAGAACTTTGTCTGGTATGTCTGCTAGCTAGCCCTTTCAGCATTTGCATGTTGCACACTTCTGTTCTAAATTTCGCTCACCTGCACATGCAAATACTGGTTGATTTGTTACTTCTTGAAATTTAGAAATTTACAAGGTTTTCACATGGTACATATTTCATGAAGTATGGGCTGATACAGCCCGTCATGTGTCTAAGAATGTGAACGTCCCTTTAGTATAGAACTTTATCTGGTATGTCTGCTAGTTAGCCCTCCCCCATTTTCCTTCTTGAATGCCTCTCCTCATCCTAAAATGGAGACAAGAACACCAACTTGAATTTTCTTTACTTTAGTAGTCTTTTTTTTTCTTCATCTTGTTTGTGTTCATCTCTTGCTTGTTGCTCTTTTTGATAAGGTAATGTTTTAATTAATGATTGGAGAAATCCCATATACAAGCCATACACCAAAAAATAAAGAATGTAAACCAAAATATTGTTCTCTACGAAAGGAAAACCAATCATCTATAAAACAGGCACCTTATGGGTGGTGTCATCTTATTTGTATTCACGTCTTTGCTTGTTGCTTATGTAGTTTATACAATTGTTGTTTATGTTTTGATGCATCATTTCACTTCTTGTGGCTCTAATGATGCACTTGATTATATTGAACTAACAGGTTGGAGCAAAAGATCACCAGCGTTTCCAAGCATCTTATGCAATTTTGCTGAAGGCCCGGTTGACTGCACTAAAGAAGAGGGAGAGGAAGGACAAGAGGAAGGCTACTGATTCTGACAAAAAGATGGATATTTCGAAAAAGAAATCTGCTGCTGCTAAAGCCTCTACATGAAACTTTAGTCCTTTGGTTTATTCCCCCATTTTGTTTCTAGGATAGAGTTGTAGGATTTGAACCCCATCCATTTGGGGCGACAAGTCTGAAACT</genome_strand>
        <mrna_strand>TTTCTTTGACCCATCGCTTCTCTTCATCGCTGTGTTGAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGATTACAGCCAGACCCATTCCTCAATGAACTGACGAGTATGTTTGAGCGAACTACTGAGCATGGTTCCGTTTGGGTTACGCTTAAACACT............................................................................................CTTCTGATAAATCTAAAGCCCAACGGAATAAGATGAAGACAGCTGGTGAAACTCTTGAATTTAAGTGCCTCATCCGAGCAACTGATGGGAAAAAGAATATTTCCACAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGCAAAAGATCACCAGCGTTTCCAAGCATCTTATGCAATTTTGCTGAAGGCCCGGTTGACTGCACTAAAGAAGAGGGAGAGGAAGGACAAGAGGAAGGCTACTGATTCTGACAAAAAGATGGATATTTCGAAAAAGAAATCTGCTGCTGCTAAAGCCTCTACATGAAACTTTAGTCCTTTGGTTTATTCCCCCATTTTGTTTCTAGGATAGAGTTGTAGGATTTGAACCCCATCCATTTGGGGCGACAAGTCTGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307521" ref_strand="+" ref_description="SGN-E307521 [cLEY-24-O7]">
      <seq>tttctttgacccatcgcttctcttcatcgctgtgttgaagttttggtttttgagttttgagatttgctgttcgaagatggtgcgattacagccagacccattcctcaatgaactgacgagtatgtttgagcgaactactgagcatggttccgtttgggttacgcttaaacactcttctgataaatctaaagcccaacggaataagatgaagacagctggtgaaactcttgaatttaagtgcctcatccgagcaactgatgggaaaaagaatatttccacaatggttggagcaaaagatcaccagcgtttccaagcatcttatgcaattttgctgaaggcccggttgactgcactaaagaagagggagaggaaggacaagaggaatgctactgattctgacaaaaagatggatatttcgaaaaagaaatctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="-" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103558" stop="94301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103258" g_stop="103180" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103179" i_stop="102415" i_length="765">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102414" g_stop="102321" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="173" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102320" i_stop="102229" i_length="92">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102228" g_stop="102119" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="283" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102118" i_stop="94751" i_length="7368">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94750" g_stop="94601" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="433" r_length="150" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="-" ref_id="SGN-E307521" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103258" e_stop="103180"/>
          <exon e_start="102414" e_stop="102321"/>
          <exon e_start="102228" e_stop="102119"/>
          <exon e_start="94750" e_stop="94601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTGACCCATCGCTTCTCTTCATCGCTGTGTTGAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATGGTAAGCGCTAACTTCAACTCATCAAAATCAATTGATCGCAATACTCTTTCGAATCAAATCTGGAAATCAAACAATGTAGAATTTTTTGATGTTAATTTTTCTTTGTTTACGCCGTTTTCAGCTTTATTTGATCTATATTTCCTTTTTGAGATTATGGGTTTCTGTAGAGTATAAATTCATGTTAGATTCTTTGTGTTCTTGAGTTGTTATGTATGTATCCCGAATCTCACTATATTGAATTGTGGAAATTAGTTAATACCAGTTTAAAATGGTGCTTATCGATTGAATTAACTAATTGGGGGTTGAGGTGATGGAAAACTTTCCCACTTAGCATTATACTCGAGTGCTGATGAATTTGATGTGTAGGTTAGAAAATTTGTTGAATCTGATGTTTTTACTTCATCCTTTAACTGGATAAAGGAGGAGGATTACATGGGTTGGGTTGATAGCCAGCGTAGAAATAAGCGAAATTACAGGAATCTTCTAAGTCTACACACTGGTTTCATCCTTGCTTTCTCTCCTGAGCACACACTCAAGCTACCCAACTACTGTATTTCTTCCTCCTTTATTCAGGTGGCACTGGTGAAGCATGCTCACATTGTTTATGTTAAGTAATCACATTGTGGAGTTCAATGTGCTTCCTATTTGTGGATACAAAATTATATGGCATTTTGCTTATTTTTGGGAAGTTTGAAAGAAGTGGCTTTGTCCATCTTTTTGGTAGAACATAAGTTGACAATTACTGATCTGAATTGGATTTGTCAGGTGCGATTACAGCCAGACCCATTCCTCAATGAACTGACGAGTATGTTTGAGCGAACTACTGAGCATGGTTCCGTTTGGGTTACGCTTAAACACTGTGAGTTTGCCTCTTCGTTGGTTTTCCTGTGTTTTGTGCTTTGTATTCTCTTTATGAGTAATACTGATTGAGCAATCTTGTCCTTTGTATAGCTTCTGATAAATCTAAAGCCCAACGGAATAAGATGAAGACAGCTGGTGAAACTCTTGAATTTAAGTGCCTCATCCGAGCAACTGATGGGAAAAAGAATATTTCCACAATGGTAATTATCACAATAGAAAGTCTCTTACCTTTTTCCATCACCTTCTTTTTGCAAGTCTTGTCGTTTTCCCCATTTTTTTGCTTTGTTGGGCACTATGTTCTCTGGAACATTGAGGGTGTTAGTTTGTTGTATGAATTATTTTTTAGCATAAGTTTAAATGTGCAAATATAGATAATTCTAGGTCCTGGCCTGTATGTTTGAGATTGAGAGCATCAAATTCAAAAAAAGGATGGTAGCCTTGTGGTGCATAGAGAATGGGAGTCGTGGTCCTTGTTTACTTGATTGATAACTAATAGGTATCGTACATGCTTGTAATACAATATTAGAGCACATAAAGGGACAATTTCTCATAAAAGGCAAACAAATTATGGATGCAACTCTTTTAGTCAGTGAACCTGTGGATTCTAGACTCGAAGGTGAAGATCCAGGGATCATGTGAAACCTAGCTATAGAGAACCCATTATGATCATGTCAACTGGGAGTTACTTCTCAACCTTCTTTAAAAAATGGGTTTTGGTGGAAGATGGTTAAAGTGGATGGTTTTTGTATCAATACTGTCCTGAATTCTAGTCATAGGAGAAATTGCTGGAATTTTCCCTCAGAGAAAGAGGACTCGGGGAGACCCCCCTCTCTTTGCCTTTTCATATTAGCTATGGAAGGTTTCAGTAGTATGATGAGAGGTACTATTCAGAACAGTGGATAAAAGGTTTCAGGATAGGCAATCAAGCAGGGGAAGAGATGTAGATTTCCTTTCATTATTGCTGATGATATAGTTGTTTTCTAAGATGCTAAAGCAGATCAGATCATGTACATCAGAATGATTTTGGTGATCTTTGGGCAATTTTTGGTCCATTTGTAAAATTGGAGGAAAGGTAGTAGTTTCCCTGTCAAAGAAGTTCCACAAATTCAATGCCTGTCCATGTTATAAGTTTCGATGATTTAACAAACTATGACATCTAGTTGGGGACCTGATCCCATGAGGGACTGAGAGTTTCAGGCAATGTGCAAAGGACAGTTGTAAAGCTGCAACTGCTGCCACAATTGCAGTGGTTGGTGCACCTTTTCAGAGGAATAGTACTCAGCCAATGGCGTTGCACTAGGTAGTTTGTCCATCTTATAATAGTCATCTTGTCAAGGGACGTTTCCTAATTTTTGAGTTGAAGATTTCCATACGGCAAAATCCACTCTCAAAAAGAAATATTCTCATATGCATCAAGAGATCTGATCGAGTGATCTACTGTTCCCTTTAGTTGTTATTTTAGTTTATCGTCTCGTGTTTATACAGTGTAAGATCTGTTCATATGTTATAAAGGAATCAGATCATTTCAGTTGTAATCGTTGTTAAAAGTTTGAGTTGTAGCTAGAGTTAGCTATGTCGTGTTCTTGAAGTCTACATTAACTTAGCTTGTTGGCGTAGTAGGCAATAGAGGTATTACTTTGTTTATGAGTAACAAAGCTGTTACGAAAGGAGAAGGGATTAAGAGTTCATTTCCTAGGTTGCAAGAGTTTGTAATCGGGATCTTAACTCTTTGAAGTAATGGAATTGGCGAAATCCTGTGAGACAGGTTGTGATTTTCTCCTTCCTTAAGCAAGGGGGTTAACACGTAAACATTTTGTGTTCTTTATTTTAAGTTTTTCTTTCTGCACTGTTCTTACTATGTGAACGGACTTGGTCCATTGACTTGTGGTGGACGCATGTAAGTCATCAGTCCAACATCTTGAGTTGTAAAATTGAGAATTTCCCGACCAACTTACTTGGGGATGCCCCTTGGAAACAATCATAAGGAGCTAGAAGTTTGGGATGAGATTATTGAAAAAATTAGTAACCAAACTCAAAATGTGTTGAGCGCTCGACTTGCTTTATGTGCGCTTCGGTGTCGTCACCAGTGTTCTAAGACATATTTTTCCTTGCCAATGTGTCTCTGCCGAAGAGGTGACACTAAACAATTGATATTTCACTTAATCACATTTTTTTTGAAAAGGTACTTTATCATTATTTTTTTCGATTTCTTCAGTCATATATTTGTTATTTGTGTTTATAATTATTCGTCTTGGACTCAGCATATATATTTGTAATTTTTTCTCCCTTTGTGCCTTTTTTCATTAAAGCCCATTCTTTGTTTGCACATAAAGGTCCAATGGGCCTTAGAGTTTTTTTGCGCTTTTCGCGTTTGATAACACTTGAAAAACTAGCCAATTGGAAAGCCCGATGTTTATCTCTTGGAGGAAGTAGTACTCTTATGAACTCAGTATTGGACTCATTGCCAACACATGTCATGTCCTTATTTCTAATGCCTTCAGGTGGAGGATACCATACAAGTTGAGGACTTTCTATGTTAGGTAATAAGGAGGGCAGAGGTATTCACTAAGTGAAATGCCAAACTGCTCAGCTTATGGTTGACTTGGTATTAGGAATCTGGGGCTTCAAAACAGATGCTTATTGACAAAATGGAGGTTTGTTGGTGAGGATCATGCACTCTGGAAGGAAGTAACTATAAAAATATGGGCAGAGTAACTATTTGTGTTCTAATATGGTCTATGTTGGCTGGGAATATAGACTGTAGTGTGTGGAATGACACCTAGATCCTTTTTCCGAGAGATAAATGGATTGGACTCGAGCCTTTAATGAGCTCATTTTCGGAACTGTTCTCATTTTGTAGCAACTCTGAAGCATCAATAGTTGACACTCTGGGTGTGTTTGTGTCACGACCCAAACCGGGTTGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATGTAATAACAGTAGAAAATAATGCGGAAGACTTAACTCATTAATAAAATCAATTCAATAACTATCAATATTCAACATCTATTATTCCCAAAACCTGGAAGTCATCATCACAAGAACATCTACGATCAAATGACTAAACTAAGAGTATTCTAAAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGTAGTAAGACTGGCTTGAATTACTGTTGAGTTGAAGACGATGGCACGTTTGCTGCACTCCACAAATAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGGGAACAGTATATATCAATATTATCGTAAATCAACTATAAAACTCAACATGTAGCCACAACAAGTATTATAATCATCAATAAGTACCATCAAGTTCATCCATGAGGGCTCAAGCCTCAACACCATACTCATTTGGGAATTATGTTCGTTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTATTCCTCTTGTGTCGGTACGTGACACTCTGATCCCCTATATCTACGTGTCGGTTCGTGACACCCGATCCCCTACATCATTCTGTAAATCATCAGGCCTTCTCTATACCAAGGTATCATCAATCCTATTACTTTAATTCATCAAGCCTTCTTCTATACCAAGGCATCATCATTAATAATGTATATTAAAGTTTCCTTTCAAGATTTGGGATTCAATATTTTCATCATGCTTATCTTATCACAATCACATAATCATATTCACGCAAACATACAATTAAGCTTATAGTAGGGTTTACAATACTACCAATACATATCATTCTCTATTAAGAGTTTACTATGAAAGCATGAAAACCATAACCTACCTCCACCGAAGAGTTGAATCAAGCAAGAATTTTCCCAAAGCTTTGTTTCTCCCTTCTCGTTCGATTTTCTCTCTCTCTCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATACCCCACTAATTAACTTAGGGTTACCTCTTTTAACCCCTCAAGAATTTGAGTTATTAATATAACCCCACGAACTTTATAATTAAGGCAAGAATAGTCAAAAACGTCCCTTAAAACTTAACCAGAAATCCGACTCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAGAGTTCAGAGACCCAAATTTCCACCAAGGGTCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCCTGCCATTCCGTCACAAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCCTCGTGCCCTTGACGGTCCGTCGTGGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAATTGAAGTCTGTTGCTCAAAACGACTAAACGGGTCGTTACAGTTTGGTATGGAGGAAAATGTTTTCCATGGAAAATGTTTTCCTAGAAAATGTTTTCCTGGAAAACAAGTAAATTTTGGACTTATTTTCTCATGTTTGGTTGGTGAGTAGAAAATATTTTCTGGATATGATTTTTAGTGTTTGATTTATGAATGAAAAATGTTTTTGAGAGACATTTTTTATTTTTACTAGAGTAAAAAATAATTTATGATATTGAAAATATTTTTCAAAATCAAAATTATTATTTTTTTGGGTGGTGGTGGGGGTGGGGTGGGGGCAGGGCGGGGGGAGGGGGAGGGGATAGGAGTGAAAAAATAAAAATTTGAATTTGATAGTATTTTTAAAAAACAAAATTAATTTTTTTGGGGATTGGGGTGGGTGGGGGCTGGTAGGGGGGCTGGCCGGGAGTGGGGGGGAGGGGTAGGAGTTAAAAAATAAAAAATTTGAAGTTGAAAATATTTTTAAAAAGCAAAATTAATTTTTTGAGGAGGGGTTGGGGTTGGGGTTGGGGGGGGCTGGCCGGGGGTTAGGGTCAAGGATCTGGTGAAAAAATAAAATTTTGAAATTGAAAATATTTATTTAAATTGATGATTTTCCCAAAAAAAAGTAATTTGAAATTGGAGGTGAGTTATGGAAAATGTTTTCCTTAATTTTTGAAGGGAAGTCATTTTCCTTAATTTTGAGGAAAATGAGTTGATTTGGAAATCATTTTCCGAAACTTTTGTCCCAACCAAACATGTGGAAATTGGAAAACATTTTCCAGAAAATGTTTTCCTTCATACCAAACACACTCTCTGTCCCCTCAAGGTGGAATCTCACATTCAGAAGGCACTTGAATGATTGAGAAGTGGGTAGATTTGTTGAGTTATTACAAGTGCTTAGTGGTTTCTTAGGTTTATCTACAGGATCAGACACAATGAGGTGGGAACATGACAGTGATGACTAGTTCTTATTAAGAAGACTCTAGAGAAATGAAGTGGTGGAGCAACCAGGAAGGAGGGGACATACCAGGTCCTTGGAAACAGATTTGGAAGTGCAGTGTCCCAAACAAGGTGCACTTGGTTGGTGACCTGAAGAGCATGTCTCACTGATGAAAAATTGGAAAGGAGGGGCTTTCAGATGGTATCCAGATGTTTTGTTTTTGGGCTAGGAGAATGAAGAAACTAATAATCATCTTTTCTTCATTGGAAGATTGTATCACAGATCTGGTCTGTGTTTCCAAGTATATCTCGAGCAAATTGGGTAACGCCTGAACACATTGCTGACCTACTTAGCTGATGCATAAGGAGTGGAGGGAGGGAACAGAGTCAGAAGGGACGGTAAGATAATACCATATTGCATATAGTGGTCAGTATGGAGAGAAGAAACAACAGATGCTTTGAGGATATCTCTAACCCAATCTAGATAATCAAAGAAAATTGTATGAATATTTTGTATTTTTGATGTAAAGAAAGGGTTTAGAAATAGCAGAGCAGTTAGCAGATATTTTAGGATGTTTGTACATTTCTGAATTTTGCTCACCTGCACATGCAAATACTCTTTGATTTGTTACTTCTTAAAATTGGGAAATTGACAAGGTTTTCCACATGGTACAACACACGGCATGGAGTTTGGGCTGAAACAGCCCGTCATGTATCTAAGAATGTGAGAGCCGCTTTAATATAGAACTTTGGTTGGGTATGTCCGCTAGCTAGCCCTTTCAGTATTTGCGAGTTGCACACTTGTTCTGAATATAGCTCACCTGCACATCCATATACTCCTTTGATTTGTTACTTCTTGAAATTGAGAAATTGACAAGGTTTTCTACATGGTACACATGGCATGAAGTTTGGGCTGACACGGCCCATCACGTGTCTTTAAGAATGTGAACTTCCCTTTAATATAGAACTTTGTCTGGTATGTCTGTTAGCTAGCCCTTTCAGCATTTGCGAGTTGCACAGTTTTGTTCTGAATTCTGCTCACCTGCACATGCAAATATGCTTTGATTAGTTACTTCTTGAAATTGAGAAATTGACAAGGTTTTCCACATGATACACATGACATGAAGTTTTTTAGCTTGTCACTTGTCTAAGAATGTGAATGTGTCTCTTTAATATAGAACTTTGTCTTGTGTATCTGCTAGCTATCCCTTTCAACATTTGTGAGTTGCACACTTCTGTTCTGAATTTTGCTCACCTGCACATGCAAATACTCTTTGATTTGTTACTTCTTGAAATTGAGAAATTGACAAGATTTTTCACATGGTACACATGGCACTAATTTTGGGCTAAAACATCTGGTCATGTTACAAGAATGTGAAATGTCGCTTTAATATAGAACTTTGTCTGGTATGTCTGCTAGCTAGCCCTTTCAGCATTTGCATGTTGCACACTTCTGTTCTAAATTTCGCTCACCTGCACATGCAAATACTGGTTGATTTGTTACTTCTTGAAATTTAGAAATTTACAAGGTTTTCACATGGTACATATTTCATGAAGTATGGGCTGATACAGCCCGTCATGTGTCTAAGAATGTGAACGTCCCTTTAGTATAGAACTTTATCTGGTATGTCTGCTAGTTAGCCCTCCCCCATTTTCCTTCTTGAATGCCTCTCCTCATCCTAAAATGGAGACAAGAACACCAACTTGAATTTTCTTTACTTTAGTAGTCTTTTTTTTTCTTCATCTTGTTTGTGTTCATCTCTTGCTTGTTGCTCTTTTTGATAAGGTAATGTTTTAATTAATGATTGGAGAAATCCCATATACAAGCCATACACCAAAAAATAAAGAATGTAAACCAAAATATTGTTCTCTACGAAAGGAAAACCAATCATCTATAAAACAGGCACCTTATGGGTGGTGTCATCTTATTTGTATTCACGTCTTTGCTTGTTGCTTATGTAGTTTATACAATTGTTGTTTATGTTTTGATGCATCATTTCACTTCTTGTGGCTCTAATGATGCACTTGATTATATTGAACTAACAGGTTGGAGCAAAAGATCACCAGCGTTTCCAAGCATCTTATGCAATTTTGCTGAAGGCCCGGTTGACTGCACTAAAGAAGAGGGAGAGGAAGGACAAGAGGAAGGCTACTGATTCTGACAAAAAGATGGATATTTCGAAAAAGAAATCTGCT</genome_strand>
        <mrna_strand>TTTCTTTGACCCATCGCTTCTCTTCATCGCTGTGTTGAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGATTACAGCCAGACCCATTCCTCAATGAACTGACGAGTATGTTTGAGCGAACTACTGAGCATGGTTCCGTTTGGGTTACGCTTAAACACT............................................................................................CTTCTGATAAATCTAAAGCCCAACGGAATAAGATGAAGACAGCTGGTGAAACTCTTGAATTTAAGTGCCTCATCCGAGCAACTGATGGGAAAAAGAATATTTCCACAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335619" ref_strand="+" ref_description="SGN-E335619 [cTOE-8-G14]">
      <seq>tttctttgacccatcgcttctcttcatcgctgtgttgaagttttggtttttgagttttgagatttgctgttcgaagatggtgcgattacagccagacccattcctcaatgaactgacgagtatgtttgagcgaactactgagcatggttccgtttgggttacgcttaaacactcttctgataaatctaaagcccaacggaataagatgaagaccgctggtgaaactcttgaatttaagtgcctcatccgagcaactgatgggaaaaagaatatttccacaatggttggagcaaaagatcaccagcgtttccaagcatcttatgcaattttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="-" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103558" stop="94400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103258" g_stop="103180" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103179" i_stop="102415" i_length="765">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102414" g_stop="102321" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="173" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102320" i_stop="102229" i_length="92">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102228" g_stop="102119" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="283" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102118" i_stop="94751" i_length="7368">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94750" g_stop="94700" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="334" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="-" ref_id="SGN-E335619" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103258" e_stop="103180"/>
          <exon e_start="102414" e_stop="102321"/>
          <exon e_start="102228" e_stop="102119"/>
          <exon e_start="94750" e_stop="94700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTGACCCATCGCTTCTCTTCATCGCTGTGTTGAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATGGTAAGCGCTAACTTCAACTCATCAAAATCAATTGATCGCAATACTCTTTCGAATCAAATCTGGAAATCAAACAATGTAGAATTTTTTGATGTTAATTTTTCTTTGTTTACGCCGTTTTCAGCTTTATTTGATCTATATTTCCTTTTTGAGATTATGGGTTTCTGTAGAGTATAAATTCATGTTAGATTCTTTGTGTTCTTGAGTTGTTATGTATGTATCCCGAATCTCACTATATTGAATTGTGGAAATTAGTTAATACCAGTTTAAAATGGTGCTTATCGATTGAATTAACTAATTGGGGGTTGAGGTGATGGAAAACTTTCCCACTTAGCATTATACTCGAGTGCTGATGAATTTGATGTGTAGGTTAGAAAATTTGTTGAATCTGATGTTTTTACTTCATCCTTTAACTGGATAAAGGAGGAGGATTACATGGGTTGGGTTGATAGCCAGCGTAGAAATAAGCGAAATTACAGGAATCTTCTAAGTCTACACACTGGTTTCATCCTTGCTTTCTCTCCTGAGCACACACTCAAGCTACCCAACTACTGTATTTCTTCCTCCTTTATTCAGGTGGCACTGGTGAAGCATGCTCACATTGTTTATGTTAAGTAATCACATTGTGGAGTTCAATGTGCTTCCTATTTGTGGATACAAAATTATATGGCATTTTGCTTATTTTTGGGAAGTTTGAAAGAAGTGGCTTTGTCCATCTTTTTGGTAGAACATAAGTTGACAATTACTGATCTGAATTGGATTTGTCAGGTGCGATTACAGCCAGACCCATTCCTCAATGAACTGACGAGTATGTTTGAGCGAACTACTGAGCATGGTTCCGTTTGGGTTACGCTTAAACACTGTGAGTTTGCCTCTTCGTTGGTTTTCCTGTGTTTTGTGCTTTGTATTCTCTTTATGAGTAATACTGATTGAGCAATCTTGTCCTTTGTATAGCTTCTGATAAATCTAAAGCCCAACGGAATAAGATGAAGACAGCTGGTGAAACTCTTGAATTTAAGTGCCTCATCCGAGCAACTGATGGGAAAAAGAATATTTCCACAATGGTAATTATCACAATAGAAAGTCTCTTACCTTTTTCCATCACCTTCTTTTTGCAAGTCTTGTCGTTTTCCCCATTTTTTTGCTTTGTTGGGCACTATGTTCTCTGGAACATTGAGGGTGTTAGTTTGTTGTATGAATTATTTTTTAGCATAAGTTTAAATGTGCAAATATAGATAATTCTAGGTCCTGGCCTGTATGTTTGAGATTGAGAGCATCAAATTCAAAAAAAGGATGGTAGCCTTGTGGTGCATAGAGAATGGGAGTCGTGGTCCTTGTTTACTTGATTGATAACTAATAGGTATCGTACATGCTTGTAATACAATATTAGAGCACATAAAGGGACAATTTCTCATAAAAGGCAAACAAATTATGGATGCAACTCTTTTAGTCAGTGAACCTGTGGATTCTAGACTCGAAGGTGAAGATCCAGGGATCATGTGAAACCTAGCTATAGAGAACCCATTATGATCATGTCAACTGGGAGTTACTTCTCAACCTTCTTTAAAAAATGGGTTTTGGTGGAAGATGGTTAAAGTGGATGGTTTTTGTATCAATACTGTCCTGAATTCTAGTCATAGGAGAAATTGCTGGAATTTTCCCTCAGAGAAAGAGGACTCGGGGAGACCCCCCTCTCTTTGCCTTTTCATATTAGCTATGGAAGGTTTCAGTAGTATGATGAGAGGTACTATTCAGAACAGTGGATAAAAGGTTTCAGGATAGGCAATCAAGCAGGGGAAGAGATGTAGATTTCCTTTCATTATTGCTGATGATATAGTTGTTTTCTAAGATGCTAAAGCAGATCAGATCATGTACATCAGAATGATTTTGGTGATCTTTGGGCAATTTTTGGTCCATTTGTAAAATTGGAGGAAAGGTAGTAGTTTCCCTGTCAAAGAAGTTCCACAAATTCAATGCCTGTCCATGTTATAAGTTTCGATGATTTAACAAACTATGACATCTAGTTGGGGACCTGATCCCATGAGGGACTGAGAGTTTCAGGCAATGTGCAAAGGACAGTTGTAAAGCTGCAACTGCTGCCACAATTGCAGTGGTTGGTGCACCTTTTCAGAGGAATAGTACTCAGCCAATGGCGTTGCACTAGGTAGTTTGTCCATCTTATAATAGTCATCTTGTCAAGGGACGTTTCCTAATTTTTGAGTTGAAGATTTCCATACGGCAAAATCCACTCTCAAAAAGAAATATTCTCATATGCATCAAGAGATCTGATCGAGTGATCTACTGTTCCCTTTAGTTGTTATTTTAGTTTATCGTCTCGTGTTTATACAGTGTAAGATCTGTTCATATGTTATAAAGGAATCAGATCATTTCAGTTGTAATCGTTGTTAAAAGTTTGAGTTGTAGCTAGAGTTAGCTATGTCGTGTTCTTGAAGTCTACATTAACTTAGCTTGTTGGCGTAGTAGGCAATAGAGGTATTACTTTGTTTATGAGTAACAAAGCTGTTACGAAAGGAGAAGGGATTAAGAGTTCATTTCCTAGGTTGCAAGAGTTTGTAATCGGGATCTTAACTCTTTGAAGTAATGGAATTGGCGAAATCCTGTGAGACAGGTTGTGATTTTCTCCTTCCTTAAGCAAGGGGGTTAACACGTAAACATTTTGTGTTCTTTATTTTAAGTTTTTCTTTCTGCACTGTTCTTACTATGTGAACGGACTTGGTCCATTGACTTGTGGTGGACGCATGTAAGTCATCAGTCCAACATCTTGAGTTGTAAAATTGAGAATTTCCCGACCAACTTACTTGGGGATGCCCCTTGGAAACAATCATAAGGAGCTAGAAGTTTGGGATGAGATTATTGAAAAAATTAGTAACCAAACTCAAAATGTGTTGAGCGCTCGACTTGCTTTATGTGCGCTTCGGTGTCGTCACCAGTGTTCTAAGACATATTTTTCCTTGCCAATGTGTCTCTGCCGAAGAGGTGACACTAAACAATTGATATTTCACTTAATCACATTTTTTTTGAAAAGGTACTTTATCATTATTTTTTTCGATTTCTTCAGTCATATATTTGTTATTTGTGTTTATAATTATTCGTCTTGGACTCAGCATATATATTTGTAATTTTTTCTCCCTTTGTGCCTTTTTTCATTAAAGCCCATTCTTTGTTTGCACATAAAGGTCCAATGGGCCTTAGAGTTTTTTTGCGCTTTTCGCGTTTGATAACACTTGAAAAACTAGCCAATTGGAAAGCCCGATGTTTATCTCTTGGAGGAAGTAGTACTCTTATGAACTCAGTATTGGACTCATTGCCAACACATGTCATGTCCTTATTTCTAATGCCTTCAGGTGGAGGATACCATACAAGTTGAGGACTTTCTATGTTAGGTAATAAGGAGGGCAGAGGTATTCACTAAGTGAAATGCCAAACTGCTCAGCTTATGGTTGACTTGGTATTAGGAATCTGGGGCTTCAAAACAGATGCTTATTGACAAAATGGAGGTTTGTTGGTGAGGATCATGCACTCTGGAAGGAAGTAACTATAAAAATATGGGCAGAGTAACTATTTGTGTTCTAATATGGTCTATGTTGGCTGGGAATATAGACTGTAGTGTGTGGAATGACACCTAGATCCTTTTTCCGAGAGATAAATGGATTGGACTCGAGCCTTTAATGAGCTCATTTTCGGAACTGTTCTCATTTTGTAGCAACTCTGAAGCATCAATAGTTGACACTCTGGGTGTGTTTGTGTCACGACCCAAACCGGGTTGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATGTAATAACAGTAGAAAATAATGCGGAAGACTTAACTCATTAATAAAATCAATTCAATAACTATCAATATTCAACATCTATTATTCCCAAAACCTGGAAGTCATCATCACAAGAACATCTACGATCAAATGACTAAACTAAGAGTATTCTAAAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGTAGTAAGACTGGCTTGAATTACTGTTGAGTTGAAGACGATGGCACGTTTGCTGCACTCCACAAATAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGGGAACAGTATATATCAATATTATCGTAAATCAACTATAAAACTCAACATGTAGCCACAACAAGTATTATAATCATCAATAAGTACCATCAAGTTCATCCATGAGGGCTCAAGCCTCAACACCATACTCATTTGGGAATTATGTTCGTTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTATTCCTCTTGTGTCGGTACGTGACACTCTGATCCCCTATATCTACGTGTCGGTTCGTGACACCCGATCCCCTACATCATTCTGTAAATCATCAGGCCTTCTCTATACCAAGGTATCATCAATCCTATTACTTTAATTCATCAAGCCTTCTTCTATACCAAGGCATCATCATTAATAATGTATATTAAAGTTTCCTTTCAAGATTTGGGATTCAATATTTTCATCATGCTTATCTTATCACAATCACATAATCATATTCACGCAAACATACAATTAAGCTTATAGTAGGGTTTACAATACTACCAATACATATCATTCTCTATTAAGAGTTTACTATGAAAGCATGAAAACCATAACCTACCTCCACCGAAGAGTTGAATCAAGCAAGAATTTTCCCAAAGCTTTGTTTCTCCCTTCTCGTTCGATTTTCTCTCTCTCTCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATACCCCACTAATTAACTTAGGGTTACCTCTTTTAACCCCTCAAGAATTTGAGTTATTAATATAACCCCACGAACTTTATAATTAAGGCAAGAATAGTCAAAAACGTCCCTTAAAACTTAACCAGAAATCCGACTCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAGAGTTCAGAGACCCAAATTTCCACCAAGGGTCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCCTGCCATTCCGTCACAAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCCTCGTGCCCTTGACGGTCCGTCGTGGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAATTGAAGTCTGTTGCTCAAAACGACTAAACGGGTCGTTACAGTTTGGTATGGAGGAAAATGTTTTCCATGGAAAATGTTTTCCTAGAAAATGTTTTCCTGGAAAACAAGTAAATTTTGGACTTATTTTCTCATGTTTGGTTGGTGAGTAGAAAATATTTTCTGGATATGATTTTTAGTGTTTGATTTATGAATGAAAAATGTTTTTGAGAGACATTTTTTATTTTTACTAGAGTAAAAAATAATTTATGATATTGAAAATATTTTTCAAAATCAAAATTATTATTTTTTTGGGTGGTGGTGGGGGTGGGGTGGGGGCAGGGCGGGGGGAGGGGGAGGGGATAGGAGTGAAAAAATAAAAATTTGAATTTGATAGTATTTTTAAAAAACAAAATTAATTTTTTTGGGGATTGGGGTGGGTGGGGGCTGGTAGGGGGGCTGGCCGGGAGTGGGGGGGAGGGGTAGGAGTTAAAAAATAAAAAATTTGAAGTTGAAAATATTTTTAAAAAGCAAAATTAATTTTTTGAGGAGGGGTTGGGGTTGGGGTTGGGGGGGGCTGGCCGGGGGTTAGGGTCAAGGATCTGGTGAAAAAATAAAATTTTGAAATTGAAAATATTTATTTAAATTGATGATTTTCCCAAAAAAAAGTAATTTGAAATTGGAGGTGAGTTATGGAAAATGTTTTCCTTAATTTTTGAAGGGAAGTCATTTTCCTTAATTTTGAGGAAAATGAGTTGATTTGGAAATCATTTTCCGAAACTTTTGTCCCAACCAAACATGTGGAAATTGGAAAACATTTTCCAGAAAATGTTTTCCTTCATACCAAACACACTCTCTGTCCCCTCAAGGTGGAATCTCACATTCAGAAGGCACTTGAATGATTGAGAAGTGGGTAGATTTGTTGAGTTATTACAAGTGCTTAGTGGTTTCTTAGGTTTATCTACAGGATCAGACACAATGAGGTGGGAACATGACAGTGATGACTAGTTCTTATTAAGAAGACTCTAGAGAAATGAAGTGGTGGAGCAACCAGGAAGGAGGGGACATACCAGGTCCTTGGAAACAGATTTGGAAGTGCAGTGTCCCAAACAAGGTGCACTTGGTTGGTGACCTGAAGAGCATGTCTCACTGATGAAAAATTGGAAAGGAGGGGCTTTCAGATGGTATCCAGATGTTTTGTTTTTGGGCTAGGAGAATGAAGAAACTAATAATCATCTTTTCTTCATTGGAAGATTGTATCACAGATCTGGTCTGTGTTTCCAAGTATATCTCGAGCAAATTGGGTAACGCCTGAACACATTGCTGACCTACTTAGCTGATGCATAAGGAGTGGAGGGAGGGAACAGAGTCAGAAGGGACGGTAAGATAATACCATATTGCATATAGTGGTCAGTATGGAGAGAAGAAACAACAGATGCTTTGAGGATATCTCTAACCCAATCTAGATAATCAAAGAAAATTGTATGAATATTTTGTATTTTTGATGTAAAGAAAGGGTTTAGAAATAGCAGAGCAGTTAGCAGATATTTTAGGATGTTTGTACATTTCTGAATTTTGCTCACCTGCACATGCAAATACTCTTTGATTTGTTACTTCTTAAAATTGGGAAATTGACAAGGTTTTCCACATGGTACAACACACGGCATGGAGTTTGGGCTGAAACAGCCCGTCATGTATCTAAGAATGTGAGAGCCGCTTTAATATAGAACTTTGGTTGGGTATGTCCGCTAGCTAGCCCTTTCAGTATTTGCGAGTTGCACACTTGTTCTGAATATAGCTCACCTGCACATCCATATACTCCTTTGATTTGTTACTTCTTGAAATTGAGAAATTGACAAGGTTTTCTACATGGTACACATGGCATGAAGTTTGGGCTGACACGGCCCATCACGTGTCTTTAAGAATGTGAACTTCCCTTTAATATAGAACTTTGTCTGGTATGTCTGTTAGCTAGCCCTTTCAGCATTTGCGAGTTGCACAGTTTTGTTCTGAATTCTGCTCACCTGCACATGCAAATATGCTTTGATTAGTTACTTCTTGAAATTGAGAAATTGACAAGGTTTTCCACATGATACACATGACATGAAGTTTTTTAGCTTGTCACTTGTCTAAGAATGTGAATGTGTCTCTTTAATATAGAACTTTGTCTTGTGTATCTGCTAGCTATCCCTTTCAACATTTGTGAGTTGCACACTTCTGTTCTGAATTTTGCTCACCTGCACATGCAAATACTCTTTGATTTGTTACTTCTTGAAATTGAGAAATTGACAAGATTTTTCACATGGTACACATGGCACTAATTTTGGGCTAAAACATCTGGTCATGTTACAAGAATGTGAAATGTCGCTTTAATATAGAACTTTGTCTGGTATGTCTGCTAGCTAGCCCTTTCAGCATTTGCATGTTGCACACTTCTGTTCTAAATTTCGCTCACCTGCACATGCAAATACTGGTTGATTTGTTACTTCTTGAAATTTAGAAATTTACAAGGTTTTCACATGGTACATATTTCATGAAGTATGGGCTGATACAGCCCGTCATGTGTCTAAGAATGTGAACGTCCCTTTAGTATAGAACTTTATCTGGTATGTCTGCTAGTTAGCCCTCCCCCATTTTCCTTCTTGAATGCCTCTCCTCATCCTAAAATGGAGACAAGAACACCAACTTGAATTTTCTTTACTTTAGTAGTCTTTTTTTTTCTTCATCTTGTTTGTGTTCATCTCTTGCTTGTTGCTCTTTTTGATAAGGTAATGTTTTAATTAATGATTGGAGAAATCCCATATACAAGCCATACACCAAAAAATAAAGAATGTAAACCAAAATATTGTTCTCTACGAAAGGAAAACCAATCATCTATAAAACAGGCACCTTATGGGTGGTGTCATCTTATTTGTATTCACGTCTTTGCTTGTTGCTTATGTAGTTTATACAATTGTTGTTTATGTTTTGATGCATCATTTCACTTCTTGTGGCTCTAATGATGCACTTGATTATATTGAACTAACAGGTTGGAGCAAAAGATCACCAGCGTTTCCAAGCATCTTATGCAATTTTGCTG</genome_strand>
        <mrna_strand>TTTCTTTGACCCATCGCTTCTCTTCATCGCTGTGTTGAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGATTACAGCCAGACCCATTCCTCAATGAACTGACGAGTATGTTTGAGCGAACTACTGAGCATGGTTCCGTTTGGGTTACGCTTAAACACT............................................................................................CTTCTGATAAATCTAAAGCCCAACGGAATAAGATGAAGACCGCTGGTGAAACTCTTGAATTTAAGTGCCTCATCCGAGCAACTGATGGGAAAAAGAATATTTCCACAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGCAAAAGATCACCAGCGTTTCCAAGCATCTTATGCAATTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257644" ref_strand="+" ref_description="SGN-E257644 [cLEG-39-C5]">
      <seq>actaaagggacgttcacattcttagacacatgacgggctgtatcagcccatacttcatgaaatatgtaccatgtgaaaaccttgtaaatttctaaatttcaagaagtaacaaatcaaccagtatttgcatgtgcaggtgagcgaaatttagaacagaagtgtgcaacatgcaaatgctgaaagggctagctaacagacataccagacaaagttctatattaaagggaagttcacattcttaaagacacgtgatgggccgtgtcagcccaaacttcatgccatgtgtaccatgtagaaaaccttgtcaatttctcaatttcaagaagtaacaaatcaaaggagtatatggatgtgcaggtgagctatattcagaacaagtgtgcaactcgcaaatactgaaagggctagctagcggacatacccaaccaaagttctatattaaagcggctctcacattcttagatacatgacgggctgtttcagcccaaactccatgccgggtgttgtaccatgtggaaaaccttgtcaatttcccaattttaagaagtaacaaaataaagaatatttgcttgtgcagcaaacgtgccatcggttttaactcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94888" stop="99345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95188" g_stop="95371" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95372" i_stop="95802" i_length="431">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95803" g_stop="96195" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="577" r_length="393" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96196" i_stop="99017" i_length="2822">
            <donor d_prob="0.907" d_score="0.92"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99018" g_stop="99045" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="605" r_length="28" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E257644" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95188" e_stop="95371"/>
          <exon e_start="95803" e_stop="96195"/>
          <exon e_start="99018" e_stop="99045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAAAGGGACGTTCACATTCTTAGACACATGACGGGCTGTATCAGCCCATACTTCATGAAATATGTACCATGTGAAAACCTTGTAAATTTCTAAATTTCAAGAAGTAACAAATCAACCAGTATTTGCATGTGCAGGTGAGCGAAATTTAGAACAGAAGTGTGCAACATGCAAATGCTGAAAGGGCTAGCTAGCAGACATACCAGACAAAGTTCTATATTAAAGCGACATTTCACATTCTTGTAACATGACCAGATGTTTTAGCCCAAAATTAGTGCCATGTGTACCATGTGAAAAATCTTGTCAATTTCTCAATTTCAAGAAGTAACAAATCAAAGAGTATTTGCATGTGCAGGTGAGCAAAATTCAGAACAGAAGTGTGCAACTCACAAATGTTGAAAGGGATAGCTAGCAGATACACAAGACAAAGTTCTATATTAAAGAGACACATTCACATTCTTAGACAAGTGACAAGCTAAAAAACTTCATGTCATGTGTATCATGTGGAAAACCTTGTCAATTTCTCAATTTCAAGAAGTAACTAATCAAAGCATATTTGCATGTGCAGGTGAGCAGAATTCAGAACAAAACTGTGCAACTCGCAAATGCTGAAAGGGCTAGCTAACAGACATACCAGACAAAGTTCTATATTAAAGGGAAGTTCACATTCTTAAAGACACGTGATGGGCCGTGTCAGCCCAAACTTCATGCCATGTGTACCATGTAGAAAACCTTGTCAATTTCTCAATTTCAAGAAGTAACAAATCAAAGGAGTATATGGATGTGCAGGTGAGCTATATTCAGAACAAGTGTGCAACTCGCAAATACTGAAAGGGCTAGCTAGCGGACATACCCAACCAAAGTTCTATATTAAAGCGGCTCTCACATTCTTAGATACATGACGGGCTGTTTCAGCCCAAACTCCATGCCGTGTGTTGTACCATGTGGAAAACCTTGTCAATTTCCCAATTTTAAGAAGTAACAAATCAAAGAGTATTTGCATGTGCAGGTGAGCAAAATTCAGAAATGTACAAACATCCTAAAATATCTGCTAACTGCTCTGCTATTTCTAAACCCTTTCTTTACATCAAAAATACAAAATATTCATACAATTTTCTTTGATTATCTAGATTGGGTTAGAGATATCCTCAAAGCATCTGTTGTTTCTTCTCTCCATACTGACCACTATATGCAATATGGTATTATCTTACCGTCCCTTCTGACTCTGTTCCCTCCCTCCACTCCTTATGCATCAGCTAAGTAGGTCAGCAATGTGTTCAGGCGTTACCCAATTTGCTCGAGATATACTTGGAAACACAGACCAGATCTGTGATACAATCTTCCAATGAAGAAAAGATGATTATTAGTTTCTTCATTCTCCTAGCCCAAAAACAAAACATCTGGATACCATCTGAAAGCCCCTCCTTTCCAATTTTTCATCAGTGAGACATGCTCTTCAGGTCACCAACCAAGTGCACCTTGTTTGGGACACTGCACTTCCAAATCTGTTTCCAAGGACCTGGTATGTCCCCTCCTTCCTGGTTGCTCCACCACTTCATTTCTCTAGAGTCTTCTTAATAAGAACTAGTCATCACTGTCATGTTCCCACCTCATTGTGTCTGATCCTGTAGATAAACCTAAGAAACCACTAAGCACTTGTAATAACTCAACAAATCTACCCACTTCTCAATCATTCAAGTGCCTTCTGAATGTGAGATTCCACCTTGAGGGGACAGAGAGTGTGTTTGGTATGAAGGAAAACATTTTCTGGAAAATGTTTTCCAATTTCCACATGTTTGGTTGGGACAAAAGTTTCGGAAAATGATTTCCAAATCAACTCATTTTCCTCAAAATTAAGGAAAATGACTTCCCTTCAAAAATTAAGGAAAACATTTTCCATAACTCACCTCCAATTTCAAATTACTTTTTTTTGGGAAAATCATCAATTTAAATAAATATTTTCAATTTCAAAATTTTATTTTTTCACCAGATCCTTGACCCTAACCCCCGGCCAGCCCCCCCCAACCCCAACCCCAACCCCTCCTCAAAAAATTAATTTTGCTTTTTAAAAATATTTTCAACTTCAAATTTTTTATTTTTTAACTCCTACCCCTCCCCCCCACTCCCGGCCAGCCCCCCTACCAGCCCCCACCCACCCCAATCCCCAAAAAAATTAATTTTGTTTTTTAAAAATACTATCAAATTCAAATTTTTATTTTTTCACTCCTATCCCCTCCCCCTCCCCCCGCCCTGCCCCCACCCCACCCCCACCACCACCCAAAAAAATAATAATTTTGATTTTGAAAAATATTTTCAATATCATAAATTATTTTTTACTCTAGTAAAAATAAAAAATGTCTCTCAAAAACATTTTTCATTCATAAATCAAACACTAAAAATCATATCCAGAAAATATTTTCTACTCACCAACCAAACATGAGAAAATAAGTCCAAAATTTACTTGTTTTCCAGGAAAACATTTTCTAGGAAAACATTTTCCATGGAAAACATTTTCCTCCATACCAAACTGTAACGACCCGTTTAGTCGTTTTGAGCAACAGACTTCAATTCTGGAAAAACTGGCAGAAGCGACGGACCCCACGACGGACCGTCAAGGGCACGAGGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTTGTGACGGAATGGCAGGACGGACCGTCACAGGTGTGACGGACCGTCACAGACCCTTGGTGGAAATTTGGGTCTCTGAACTCTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCGCAAATCCCAGGCAGAGTCGGATTTCTGGTTAAGTTTTAAGGGACGTTTTTGACTATTCTTGCCTTAATTATAAAGTTCGTGGGGTTATATTAATAACTCAAATTCTTGAGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAGAGAGAGAGAAAATCGAACGAGAAGGGAGAAACAAAGCTTTGGGAAAATTCTTGCTTGATTCAACTCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTACTATAAGCTTAATTGTATGTTTGCGTGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAGGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTAATAGGATTGATGATACCTTGGTATAGAGAAGGCCTGATGATTTACAGAATGATGTAGGGGATCGGGTGTCACGAACCGACACGTAGATATAGGGGATCAGAGTGTCACGTACCGACACAAGAGGAATAATGAATATGAGGGATCGGAGTGTCACGTACCGACACAAGAGAATTAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATAATTCCCAAATGAGTATGGTGTTGAGGCTTGAGCCCTCATGGATGAACTTGATGGTACTTATTGATGATTATAATACTTGTTGTGGCTACATGTTGAGTTTTATAGTTGATTTACGATAATATTGATATATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAACA</genome_strand>
        <mrna_strand>ACTAAAGGGACGTTCACATTCTTAGACACATGACGGGCTGTATCAGCCCATACTTCATGAAATATGTACCATGTGAAAACCTTGTAAATTTCTAAATTTCAAGAAGTAACAAATCAACCAGTATTTGCATGTGCAGGTGAGCGAAATTTAGAACAGAAGTGTGCAACATGCAAATGCTGAAAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGCTAACAGACATACCAGACAAAGTTCTATATTAAAGGGAAGTTCACATTCTTAAAGACACGTGATGGGCCGTGTCAGCCCAAACTTCATGCCATGTGTACCATGTAGAAAACCTTGTCAATTTCTCAATTTCAAGAAGTAACAAATCAAAGGAGTATATGGATGTGCAGGTGAGCTATATTCAGAACAAGTGTGCAACTCGCAAATACTGAAAGGGCTAGCTAGCGGACATACCCAACCAAAGTTCTATATTAAAGCGGCTCTCACATTCTTAGATACATGACGGGCTGTTTCAGCCCAAACTCCATGCCGGGTGTTGTACCATGTGGAAAACCTTGTCAATTTCCCAATTTTAAGAAGTAACAAAATAAAGAATATTTGCTTGTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGTGCCATCGGTTTTAACTCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="+" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98332" stop="99408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98632" g_stop="99108" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98632" e_stop="99108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATATAGGGGATCAGAGTGTCACGTACCGACACAAGAGGAATAATGAATA-TGAGGGATCGGAGTGTCACGTACCGACACAAGAGAATTAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATAATTCCCAAATGAGTATGGTGTTGAGGCTTGAGCCCTCATGGATGAACTTGATGGTACTTATTGATGATTATAATACTTGTTGTGGCTACATGTTGAGTTTTATAGTTGA-TTTACGATAATA-TT-G-ATATATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGA-TATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335625" ref_strand="+" ref_description="SGN-E335625 [cTOE-8-I18]">
      <seq>tttgacccatcgcttctcttcatcgctgtgtggaagttttggtttttgagttttgagatttgctgttcgaagatggtgcgataacatccatacccattcctcagtgaactgaccagtatgtttgagcgaactactgaccatggttgcgatcgggttacgcttaaacactcttctgatgaatctaaagcccaacggaataagatgaatacagctggtgaaactcttgaatttaagtgccttatccgagcaactgatgggaaaaagaatatttccgcaatggttggagcctaagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="-" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103554" stop="101817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103254" g_stop="103180" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103179" i_stop="102415" i_length="765">
            <donor d_prob="0.726" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102414" g_stop="102321" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="169" r_length="94" r_score="0.904"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102320" i_stop="102229" i_length="92">
            <donor d_prob="0.958" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102228" g_stop="102119" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="279" r_length="110" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="-" ref_id="SGN-E335625" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103254" e_stop="103180"/>
          <exon e_start="102414" e_stop="102321"/>
          <exon e_start="102228" e_stop="102119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACCCATCGCTTCTCTTCATCGCTGTGTTGAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATGGTAAGCGCTAACTTCAACTCATCAAAATCAATTGATCGCAATACTCTTTCGAATCAAATCTGGAAATCAAACAATGTAGAATTTTTTGATGTTAATTTTTCTTTGTTTACGCCGTTTTCAGCTTTATTTGATCTATATTTCCTTTTTGAGATTATGGGTTTCTGTAGAGTATAAATTCATGTTAGATTCTTTGTGTTCTTGAGTTGTTATGTATGTATCCCGAATCTCACTATATTGAATTGTGGAAATTAGTTAATACCAGTTTAAAATGGTGCTTATCGATTGAATTAACTAATTGGGGGTTGAGGTGATGGAAAACTTTCCCACTTAGCATTATACTCGAGTGCTGATGAATTTGATGTGTAGGTTAGAAAATTTGTTGAATCTGATGTTTTTACTTCATCCTTTAACTGGATAAAGGAGGAGGATTACATGGGTTGGGTTGATAGCCAGCGTAGAAATAAGCGAAATTACAGGAATCTTCTAAGTCTACACACTGGTTTCATCCTTGCTTTCTCTCCTGAGCACACACTCAAGCTACCCAACTACTGTATTTCTTCCTCCTTTATTCAGGTGGCACTGGTGAAGCATGCTCACATTGTTTATGTTAAGTAATCACATTGTGGAGTTCAATGTGCTTCCTATTTGTGGATACAAAATTATATGGCATTTTGCTTATTTTTGGGAAGTTTGAAAGAAGTGGCTTTGTCCATCTTTTTGGTAGAACATAAGTTGACAATTACTGATCTGAATTGGATTTGTCAGGTGCGATTACAGCCAGACCCATTCCTCAATGAACTGACGAGTATGTTTGAGCGAACTACTGAGCATGGTTCCGTTTGGGTTACGCTTAAACACTGTGAGTTTGCCTCTTCGTTGGTTTTCCTGTGTTTTGTGCTTTGTATTCTCTTTATGAGTAATACTGATTGAGCAATCTTGTCCTTTGTATAGCTTCTGATAAATCTAAAGCCCAACGGAATAAGATGAAGACAGCTGGTGAAACTCTTGAATTTAAGTGCCTCATCCGAGCAACTGATGGGAAAAAGAATATTTCCACAATG</genome_strand>
        <mrna_strand>TTTGACCCATCGCTTCTCTTCATCGCTGTGTGGAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGATAACATCCATACCCATTCCTCAGTGAACTGACCAGTATGTTTGAGCGAACTACTGACCATGGTTGCGATCGGGTTACGCTTAAACACT............................................................................................CTTCTGATGAATCTAAAGCCCAACGGAATAAGATGAATACAGCTGGTGAAACTCTTGAATTTAAGTGCCTTATCCGAGCAACTGATGGGAAAAAGAATATTTCCGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305395" ref_strand="+" ref_description="SGN-E305395 [cLEX-15-I21]">
      <seq>tttctttgacccatcgcttctcttcatcgctgtgttgaagttttggtttttgagttttgagatttgctgttcgaagatggtgcgattacagccagacccattcctcaatgaactgacgagtatgtttgagcgaactactgagcatggttccgtttgggttacgcttaaacactcttctgataaatctaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0261A18-Tr9E4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0261A18.1" temp_strand="-" temp_description="C06HBa0261A18.1  AC211067.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0261A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103558" stop="102019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103258" g_stop="103180" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103179" i_stop="102415" i_length="765">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102414" g_stop="102321" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="173" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102320" i_stop="102229" i_length="92">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102228" g_stop="102211" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="191" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0261A18.1" gen_strand="-" ref_id="SGN-E305395" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>191</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0261A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103258" e_stop="103180"/>
          <exon e_start="102414" e_stop="102321"/>
          <exon e_start="102228" e_stop="102211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTGACCCATCGCTTCTCTTCATCGCTGTGTTGAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATGGTAAGCGCTAACTTCAACTCATCAAAATCAATTGATCGCAATACTCTTTCGAATCAAATCTGGAAATCAAACAATGTAGAATTTTTTGATGTTAATTTTTCTTTGTTTACGCCGTTTTCAGCTTTATTTGATCTATATTTCCTTTTTGAGATTATGGGTTTCTGTAGAGTATAAATTCATGTTAGATTCTTTGTGTTCTTGAGTTGTTATGTATGTATCCCGAATCTCACTATATTGAATTGTGGAAATTAGTTAATACCAGTTTAAAATGGTGCTTATCGATTGAATTAACTAATTGGGGGTTGAGGTGATGGAAAACTTTCCCACTTAGCATTATACTCGAGTGCTGATGAATTTGATGTGTAGGTTAGAAAATTTGTTGAATCTGATGTTTTTACTTCATCCTTTAACTGGATAAAGGAGGAGGATTACATGGGTTGGGTTGATAGCCAGCGTAGAAATAAGCGAAATTACAGGAATCTTCTAAGTCTACACACTGGTTTCATCCTTGCTTTCTCTCCTGAGCACACACTCAAGCTACCCAACTACTGTATTTCTTCCTCCTTTATTCAGGTGGCACTGGTGAAGCATGCTCACATTGTTTATGTTAAGTAATCACATTGTGGAGTTCAATGTGCTTCCTATTTGTGGATACAAAATTATATGGCATTTTGCTTATTTTTGGGAAGTTTGAAAGAAGTGGCTTTGTCCATCTTTTTGGTAGAACATAAGTTGACAATTACTGATCTGAATTGGATTTGTCAGGTGCGATTACAGCCAGACCCATTCCTCAATGAACTGACGAGTATGTTTGAGCGAACTACTGAGCATGGTTCCGTTTGGGTTACGCTTAAACACTGTGAGTTTGCCTCTTCGTTGGTTTTCCTGTGTTTTGTGCTTTGTATTCTCTTTATGAGTAATACTGATTGAGCAATCTTGTCCTTTGTATAGCTTCTGATAAATCTAAAG</genome_strand>
        <mrna_strand>TTTCTTTGACCCATCGCTTCTCTTCATCGCTGTGTTGAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGATTACAGCCAGACCCATTCCTCAATGAACTGACGAGTATGTTTGAGCGAACTACTGAGCATGGTTCCGTTTGGGTTACGCTTAAACACT............................................................................................CTTCTGATAAATCTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>56</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1" PGL_stop="2250"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1" e_stop="202"/>
            <exon e_start="1348" e_stop="1445"/>
            <exon e_start="1766" e_stop="2250"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.927" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.734" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1" e_stop="202" e_length="202"/>
          </exon>
          <intron i_serial="1" don_prob="0.927" acc_prob="0.996">
            <gDNA_intron_boundary i_start="203" i_stop="1347" i_length="1145"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1348" e_stop="1445" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.734" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1446" i_stop="1765" i_length="320"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="1766" e_stop="2250" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="202"/>
              <exon start="1348" stop="1445"/>
              <exon start="1766" stop="2162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19" stop="202"/>
              <exon start="1348" stop="1445"/>
              <exon start="1766" stop="2034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33" stop="202"/>
              <exon start="1348" stop="1445"/>
              <exon start="1766" stop="2250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64" stop="202"/>
              <exon start="1348" stop="1445"/>
              <exon start="1766" stop="2221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77" stop="202"/>
              <exon start="1348" stop="1445"/>
              <exon start="1766" stop="2039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87" stop="202"/>
              <exon start="1348" stop="1445"/>
              <exon start="1766" stop="2249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88" stop="202"/>
              <exon start="1348" stop="1445"/>
              <exon start="1766" stop="2097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89" stop="202"/>
              <exon start="1348" stop="1445"/>
              <exon start="1766" stop="2037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141" stop="202"/>
              <exon start="1348" stop="1445"/>
              <exon start="1766" stop="2232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162" stop="202"/>
              <exon start="1348" stop="1445"/>
              <exon start="1766" stop="1967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332773" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAGAGTCTAAAAGGAGCACCAAGTTTATGGTAGTATTAGTATAACTAAGTGGAGGAAGAAAAGGGAGAGAGATTCTAGAGAGAGAAGGGTAGCTCAAGTTTTGCTTTTGGGTTTCTTGTTGGACTTGGCTTTTTGGCTTTGGTTTCAGCTTTTTCTCTGAAAGGGGGTTTTAATGGAGGACTTTAAACATAACTTGAG : GGTGACACAGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTAT : GGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTCTCCGAGGGTCGCCTCTCCAAGGGTTGTCTCTCCTAAGGCAGCTTCTCCAAAGGTTACCTCTCCCAAGGAAGCTTCTCCGAAGGTTACATCTCCCAGGGAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTATTTT</gDNA_template>
            <first_frame> K  K  E  S  K  R  S  T  K  F  M  V  V  L  V  *  L  S  G  G  R  K  G  R  E  I  L  E  R  E  G  *  L  K  F  C  F  W  V  S  C  W  T  W  L  F  G  F  G  F  S  F  F  S  E  R  G  F  *  W  R  T  L  N  I  T  *   : G  *  H  S  N  A  R  N  M  G  E  K  G  S  W  F  Y  A  L  K  R  V  F  T  C  N  S  K  K  K  S  A  Y  :  G  S  G  K  K  T  A  K  E  K  K  K  G  R  R  I  L  R  H  G  E  F  K  S  F  L  F  R  E  P  S  S  I  E  K  I  L  G  E  V  D  D  Q  N  L  L  V  R  P  P  T  S  E  Q  S  G  I  P  S  A  F  P  V  A  P  T  S  P  R  I  N  S  P  R  D  A  S  P  Q  S  S  Y  R  A  T  S  P  G  V  T  S  P  R  V  A  S  P  R  V  V  S  P  K  A  A  S  P  K  V  T  S  P  K  E  A  S  P  K  V  T  S  P  R  E  A  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  A  I   </first_frame>
            <second_frame>  K  K  S  L  K  G  A  P  S  L  W  *  Y  *  Y  N  *  V  E  E  E  K  G  E  R  F  *  R  E  K  G  S  S  S  F  A  F  G  F  L  V  G  L  G  F  L  A  L  V  S  A  F  S  L  K  G  G  F  N  G  G  L  *  T  *  L  E  :  G  D  T  V  M  L  E  T  W  G  K  K  A  V  G  F  M  P  S  K  G  F  L  R  V  T  P  R  R  S  L  P  M :   D  Q  G  R  K  L  Q  R  K  R  R  R  V  V  E  Y  *  G  M  E  S  S  N  H  S  S  S  E  N  Q  A  V  L  R  K  Y  W  V  R  L  M  I  R  T  Y  L  L  G  L  L  L  L  N  N  L  A  F  H  L  H  S  L  W  H  Q  L  L  Q  E  S  I  H  L  E  M  R  L  L  R  V  L  I  G  L  H  L  L  V  S  L  L  R  G  S  P  L  Q  G  L  S  L  L  R  Q  L  L  Q  R  L  P  L  P  R  K  L  L  R  R  L  H  L  P  G  K  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  L  F  </second_frame>
            <third_frame>   K  R  V  *  K  E  H  Q  V  Y  G  S  I  S  I  T  K  W  R  K  K  R  E  R  D  S  R  E  R  R  V  A  Q  V  L  L  L  G  F  L  L  D  L  A  F  W  L  W  F  Q  L  F  L  *  K  G  V  L  M  E  D  F  K  H  N  L  R :   V  T  Q  *  C  *  K  H  G  G  K  R  Q  L  V  L  C  P  Q  K  G  F  Y  V  *  L  Q  E  E  V  C  L   : W  I  R  E  E  N  C  K  G  K  E  E  G  S  *  N  T  E  A  W  R  V  Q  I  I  P  L  Q  R  T  K  Q  Y  *  E  N  T  G  *  G  *  *  S  E  P  T  C  *  A  S  Y  F  *  T  I  W  H  S  I  C  I  P  C  G  T  N  F  S  K  N  Q  F  T  *  R  C  V  S  S  E  F  L  *  G  Y  I  S  W  C  H  F  S  E  G  R  L  S  K  G  C  L  S  *  G  S  F  S  K  G  Y  L  S  Q  G  S  F  S  E  G  Y  I  S  Q  G  S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  C  Y  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0261A18.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1353" stop="1445"/>
                    <exon start="1766" stop="2248"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSNARNMGEKGSWFYALKRVFTCNSKKKSAYGSGKKTAKEKKKGRRILRHGEFKSFLFREPSSIEKILGEVDDQNLLVRPPTSEQSGIPSAFPVAPTSPRINSPRDASPQSSYRATSPGVTSPRVASPRVVSPKAASPKVTSPKEASPKVTSPREAFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFAI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="226" e_stop="937"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="226" e_stop="937" e_length="712"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="226" stop="937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315137" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAATTAATTTACTTTCTGTAGACTCTGCAAGTTTGGATGGTGATTTTAGGGCATAAAAATGTGTTCTTTACTCCTTTGTGAACTAAAAATTTGATTTTTATTTTTGTGTGTCTTTATATGTGGTGTAGAATTTGGGGGTTTGTTTTTTGATTTTGATTTTATAATTTCTTGATATTATTTGTCTGTTACATTCTTGGTAGTTGTCAAGGAAATAAGGACAAAACAACAAATTTCATCATCAGAATGTAATTTTAGCATCTATTTGTAAAAAAAATATCTATTTTTTTCTGCCCCTTGTGTTTCTCTCTTCTGATCTCATCACCATCTTGAAGAAGGTTGAAAAGCAGCAAGGAATTTATTTTGTTTTTGAAAAAAAAGGAAGAGTATTATGAAATCATCTGGATGATGATGATGATGACATGAACTTGTGTGTTATTGTCTTTAGCTAGTTTAAAAATTGGACCTTTCTTTAGTTTGATTCCTTCTTGTTCTTGAAGTTTGAATTTTAAAGTCAACTCAAAGAATGAAATATCTAGAAAAGAAATTAAAGGGACCTAAAAACTAAGTTGGACAGTTTCTTCACTTTCGACGTTGCACCCATGCCGGATTATCCAAAAATACACTATTTTTGAAGAAACTTTTAGAGATTTGGACACATTTTTGAAGAGTTTGAGCAACATAGACTAAAAATTCATTTCCCTGTTTGCCTTT</gDNA_template>
            <first_frame> *  I  N  L  L  S  V  D  S  A  S  L  D  G  D  F  R  A  *  K  C  V  L  Y  S  F  V  N  *  K  F  D  F  Y  F  C  V  S  L  Y  V  V  *  N  L  G  V  C  F  L  I  L  I  L  *  F  L  D  I  I  C  L  L  H  S  W  *  L  S  R  K  *  G  Q  N  N  K  F  H  H  Q  N  V  I  L  A  S  I  C  K  K  N  I  Y  F  F  L  P  L  V  F  L  S  S  D  L  I  T  I  L  K  K  V  E  K  Q  Q  G  I  Y  F  V  F  E  K  K  G  R  V  L  *  N  H  L  D  D  D  D  D  D  M  N  L  C  V  I  V  F  S  *  F  K  N  W  T  F  L  *  F  D  S  F  L  F  L  K  F  E  F  *  S  Q  L  K  E  *  N  I  *  K  R  N  *  R  D  L  K  T  K  L  D  S  F  F  T  F  D  V  A  P  M  P  D  Y  P  K  I  H  Y  F  *  R  N  F  *  R  F  G  H  I  F  E  E  F  E  Q  H  R  L  K  I  H  F  P  V  C  L  </first_frame>
            <second_frame>  K  L  I  Y  F  L  *  T  L  Q  V  W  M  V  I  L  G  H  K  N  V  F  F  T  P  L  *  T  K  N  L  I  F  I  F  V  C  L  Y  M  W  C  R  I  W  G  F  V  F  *  F  *  F  Y  N  F  L  I  L  F  V  C  Y  I  L  G  S  C  Q  G  N  K  D  K  T  T  N  F  I  I  R  M  *  F  *  H  L  F  V  K  K  I  S  I  F  F  C  P  L  C  F  S  L  L  I  S  S  P  S  *  R  R  L  K  S  S  K  E  F  I  L  F  L  K  K  K  E  E  Y  Y  E  I  I  W  M  M  M  M  M  T  *  T  C  V  L  L  S  L  A  S  L  K  I  G  P  F  F  S  L  I  P  S  C  S  *  S  L  N  F  K  V  N  S  K  N  E  I  S  R  K  E  I  K  G  T  *  K  L  S  W  T  V  S  S  L  S  T  L  H  P  C  R  I  I  Q  K  Y  T  I  F  E  E  T  F  R  D  L  D  T  F  L  K  S  L  S  N  I  D  *  K  F  I  S  L  F  A  F </second_frame>
            <third_frame>   N  *  F  T  F  C  R  L  C  K  F  G  W  *  F  *  G  I  K  M  C  S  L  L  L  C  E  L  K  I  *  F  L  F  L  C  V  F  I  C  G  V  E  F  G  G  L  F  F  D  F  D  F  I  I  S  *  Y  Y  L  S  V  T  F  L  V  V  V  K  E  I  R  T  K  Q  Q  I  S  S  S  E  C  N  F  S  I  Y  L  *  K  K  Y  L  F  F  S  A  P  C  V  S  L  F  *  S  H  H  H  L  E  E  G  *  K  A  A  R  N  L  F  C  F  *  K  K  R  K  S  I  M  K  S  S  G  *  *  *  *  *  H  E  L  V  C  Y  C  L  *  L  V  *  K  L  D  L  S  L  V  *  F  L  L  V  L  E  V  *  I  L  K  S  T  Q  R  M  K  Y  L  E  K  K  L  K  G  P  K  N  *  V  G  Q  F  L  H  F  R  R  C  T  H  A  G  L  S  K  N  T  L  F  L  K  K  L  L  E  I  W  T  H  F  *  R  V  *  A  T  *  T  K  N  S  F  P  C  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0261A18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="4372" PGL_stop="3888"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4372" e_stop="4186"/>
            <exon e_start="4153" e_stop="3888"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.957"/>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="4372" e_stop="4186" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4185" i_stop="4154" i_length="32"/>
          </intron>
          <exon e_serial="2" e_score="0.910">
            <gDNA_exon_boundary e_start="4153" e_stop="3888" e_length="266"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4372" stop="4186"/>
              <exon start="4153" stop="4016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4372" stop="4220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4371" stop="4186"/>
              <exon start="4153" stop="3888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACATAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCGTTGGTCTTTTTCTCTGCAATATTT : GAAGTAAAATGTTTGTAAATTGTATATTTAAGTGTATAACACGAAGATATATGTTTTTTCATGTATATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAAAAATTATACACTTTTGTGTATAAAGCGAGAGAGGTGAGCGAGAATGGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGGCGCCTGACAAACTTTGGCTAAAGTTTGCTATGAAGCAAAATTAAATCAAACCCTAGCTACTCCATTTATTTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  T  I  V  *  F  V  G  L  F  L  C  N  I   : *  S  K  M  F  V  N  C  I  F  K  C  I  T  R  R  Y  M  F  F  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  K  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  E  S  G  E  R  D  F  W  E  R  G  A  *  Q  T  L  A  K  V  C  Y  E  A  K  L  N  Q  T  L  A  T  P  F  I  L  G  Y  * </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  L  A  L  Y  K  N  R  N  I  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  V  F  F  S  A  I  F  :  E  V  K  C  L  *  I  V  Y  L  S  V  *  H  E  D  I  C  F  F  M  Y  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  K  L  Y  T  F  V  Y  K  A  R  E  V  S  E  N  G  R  V  A  S  E  I  F  G  R  E  A  P  D  K  L  W  L  K  F  A  M  K  Q  N  *  I  K  P  *  L  L  H  L  F  *  V  I   </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  S  L  Y  T  K  T  E  T  *  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  H  N  C  I  I  R  W  S  F  S  L  Q  Y  L :   K  *  N  V  C  K  L  Y  I  *  V  Y  N  T  K  I  Y  V  F  S  C  I  Y  T  I  F  S  R  F  I  Q  N  R  N  K  N  Y  T  L  L  C  I  K  R  E  R  *  A  R  M  G  E  W  R  A  R  F  L  G  E  R  R  L  T  N  F  G  *  S  L  L  *  S  K  I  K  S  N  P  S  Y  S  I  Y  F  R  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0261A18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="11945" PGL_stop="12693"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11945" e_stop="12693"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="11945" e_stop="12693" e_length="749"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11945" stop="12655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11945" stop="12540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11945" stop="12470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12016" stop="12693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12016" stop="12374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCTTTGACAAATCAACGGTAGTAGCTAGCTAGACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCATTGTCTCAATCTTAGAAGGATCCACCATCACCCCGTCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCCAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGTTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTAATACAAATTCGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCTCTTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCTATGCGAGGAATGGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGATATTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAACCTTTACTTAACAACTCTTGAAGTTGGTCCTTTAACTCTCTTAACTCCACGGGATACATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</gDNA_template>
            <first_frame> E  S  F  D  K  S  T  V  V  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  P  V  L  R  N  H  M  P  Q  E  G  H  C  I  Q  P  K  L  T  L  G  E  F  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  V  H  E  S  S  R  G  I  R  K  T  K  R  H  *  Y  K  F  V  M  P  I  P  S  S  K  S  S  L  W  H  I  R  C  S  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  Y  A  R  N  G  I  L  V  L  N  S  Y  L  V  Q  L  P  I  F  Y  A  H  P  K  T  P  I  L  L  L  H  K  *  P  E  H  P  K  G  M  H  L  V  *  *  N  L  Y  L  T  T  L  E  V  G  P  L  T  L  L  T  P  R  D  T  F  Y  K  G  V  *  K  W  G  E   </first_frame>
            <second_frame>  N  P  L  T  N  Q  R  *  *  L  A  R  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  I  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  R  Y  G  L  K  I  P  F  I  K  F  M  K  A  A  G  A  F  V  R  P  K  D  I  N  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  L  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  M  G  Y  L  F  L  I  V  T  L  F  N  C  R  Y  S  M  H  I  R  K  L  P  S  F  F  F  T  N  N  R  S  T  P  R  G  C  T  W  S  N  E  T  F  T  *  Q  L  L  K  L  V  L  *  L  S  *  L  H  G  I  H  S  I  R  G  Y  R  N  G  A  S  </second_frame>
            <third_frame>   I  L  *  Q  I  N  G  S  S  *  L  D  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  P  R  P  *  K  P  H  A  P  R  R  T  L  H  P  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  Q  R  D  P  D  M  A  *  K  S  R  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  L  I  Q  I  R  N  A  H  T  *  F  E  K  Q  S  L  A  H  P  L  L  L  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  L  C  E  E  W  D  T  C  S  *  *  L  P  C  S  T  A  D  I  L  C  T  S  E  N  S  H  P  S  S  S  Q  I  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  S  F  N  S  L  N  S  T  G  Y  I  L  *  G  G  I  E  M  G  R  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0261A18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12005" stop="12208"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HISRSYPILHCLNLRRIHHHPVLRNHMPQEGHCIQPKLTLGEFGIKLFLPQHFQYHSQMLLMFLLAL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0261A18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12141" stop="12338"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSRYGLKIPFIKFMKAAGAFVRPKDINTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="13958" PGL_stop="12564"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13958" e_stop="13787"/>
            <exon e_start="13042" e_stop="12564"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.919"/>
          <exon-only e_score="0.894"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="13958" e_stop="13787" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="13786" i_stop="13043" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.894">
            <gDNA_exon_boundary e_start="13042" e_stop="12564" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13958" stop="13787"/>
              <exon start="13042" stop="12564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCAGGTATGCCACCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAACTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTTCAAG : AAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCTAAATTTTGCGATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCTTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCATATCATCTTCTTTCTTCGTGCTAAGAAAATGGTTAGTAAGGTTTGTTTAGCGTTCTTGGCACATCTCAGGGATGATACTACCTAAGTACCTCCAATTGAGTCGGTCTCGATAGTTCGTGAGTTTTTAGATGTGTTTCCCGCAGACCTTCCGGGTATGCCACCGGATAGAGATATTTACTTCTGCATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGTATCCCGTGGAGTTAAGAGAGTTAAAGGACCAACTTCAAGAGTTGTTAAGTAAAGGTTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTT</gDNA_template>
            <first_frame> A  R  *  D  V  G  Y  C  I  *  G  *  V  S  C  I  I  Q  V  C  H  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  L  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  L  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  H  I  I  F  F  L  R  A  K  K  M  V  S  K  V  C  L  A  F  L  A  H  L  R  D  D  T  T  *  V  P  P  I  E  S  V  S  I  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  Y  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  Y  P  V  E  L  R  E  L  K  D  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V </first_frame>
            <second_frame>  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  N  F  V  S  V  H  K  S  G  F  A  V  L  *  R  G  *  G  Q  N  C  G  F  Q  P  Y  R  *  R  L  R  Q  N  P  F  K  :  K  W  L  I  L  M  *  F  W  V  *  L  G  F  L  *  I  L  R  S  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  I  S  S  S  F  F  V  L  R  K  W  L  V  R  F  V  *  R  S  W  H  I  S  G  M  I  L  P  K  Y  L  Q  L  S  R  S  R  *  F  V  S  F  *  M  C  F  P  Q  T  F  R  V  C  H  R  I  E  I  F  T  S  A  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  C  I  P  W  S  *  E  S  *  R  T  N  F  K  S  C  *  V  K  V  S  L  D  Q  V  H  P  L  G  V  L  R   </second_frame>
            <third_frame>   K  V  G  C  R  L  L  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  T  L  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  V  R  T  A  D  F  S  L  T  G  S  G  Y  G  K  I  L  S  R :   N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  K  F  C  D  L  G  L  *  C  *  N  C  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  G  L  F  S  V  L  G  T  S  Q  G  *  Y  Y  L  S  T  S  N  *  V  G  L  D  S  S  *  V  F  R  C  V  S  R  R  P  S  G  Y  A  T  G  *  R  Y  L  L  L  H  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  V  S  R  G  V  K  R  V  K  G  P  T  S  R  V  V  K  *  R  F  H  *  T  K  C  I  P  L  G  C  S  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0261A18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13922" stop="13787"/>
                    <exon start="13042" stop="12810"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSCIIQVCHQLCFSPQERIRRFVKGLRSELRISALQVAATAKSFQEMVDFDVILGMTWLSLNFAILDCNAKTVTLAKLGTDPLVWEGDYTSNPVHIIFFLRAKKMVSKVCLAFLAHLRDDTT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0261A18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12809" stop="12564"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPPIESVSIVREFLDVFPADLPGMPPDRDIYFCIDLEPGTRPISIPPYRMYPVELRELKDQLQELLSKGFIRPSASPWGAPV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="12935" PGL_stop="13265"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12935" e_stop="13265"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="12935" e_stop="13265" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12935" stop="13265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTGTCCCAAGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTTAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCTCCACAAAAGTTATCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGACACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAGGATACATATGAAAATGTAGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  R  S  Q  N  L  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  S  L  H  K  Y  C  S  P  Q  K  L  S  N  K  T  Y  I  L  F  Q  L  S  Q  T  H  P  P  E  *  T  H  E  *  V  C  Q  A  I  H  N  V  N  *  D  H  *  Q  M  R  R  I  H  M  K  M  *  S  Q  G  Q  I  I  Q  K  P  Y  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  K  L  G  *  R  H  S  F  S  I  T  I  Q  D  R  K  I  *  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  V  Y  I  S  I  A  L  H  K  S  Y  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  H  R  S  R  H  T  N  R  Y  V  K  Q  F  T  M  *  I  K  T  I  S  K  C  G  G  Y  I  *  K  C  R  A  R  V  K  *  Y  R  S  H  T  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  S  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  R  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  S  T  K  V  I  K  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  D  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  L  A  N  A  E  D  T  Y  E  N  V  E  P  G  S  N  N  T  E  A  I  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0261A18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13066" stop="13263"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLSTKVIKQDLYTFSTITDSPTGVDTRIGMSSNSQCKLRPLANAEDTYENVEPGSNNTEAIQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="41598" PGL_stop="51503"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41598" e_stop="42337"/>
            <exon e_start="43315" e_stop="43528"/>
            <exon e_start="43610" e_stop="43690"/>
            <exon e_start="44196" e_stop="44288"/>
            <exon e_start="44374" e_stop="44460"/>
            <exon e_start="47245" e_stop="47345"/>
            <exon e_start="47811" e_stop="47844"/>
            <exon e_start="47922" e_stop="47996"/>
            <exon e_start="48741" e_stop="48824"/>
            <exon e_start="48923" e_stop="49057"/>
            <exon e_start="50360" e_stop="50505"/>
            <exon e_start="51088" e_stop="51503"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="0.991"/>
          <exon-intron don_prob="0.928" acc_prob="0.996" e_score="0.986"/>
          <exon-intron don_prob="0.903" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="0.851" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.668" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.667" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="41598" e_stop="42337" e_length="740"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="42338" i_stop="43314" i_length="977"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="43315" e_stop="43528" e_length="214"/>
          </exon>
          <intron i_serial="2" don_prob="0.928" acc_prob="0.996">
            <gDNA_intron_boundary i_start="43529" i_stop="43609" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43610" e_stop="43690" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.903" acc_prob="0.768">
            <gDNA_intron_boundary i_start="43691" i_stop="44195" i_length="505"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44196" e_stop="44288" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.851" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44289" i_stop="44373" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44374" e_stop="44460" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="44461" i_stop="47244" i_length="2784"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47245" e_stop="47345" e_length="101"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="47346" i_stop="47810" i_length="465"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47811" e_stop="47844" e_length="34"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.668">
            <gDNA_intron_boundary i_start="47845" i_stop="47921" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="47922" e_stop="47996" e_length="75"/>
          </exon>
          <intron i_serial="8" don_prob="0.985" acc_prob="0.924">
            <gDNA_intron_boundary i_start="47997" i_stop="48740" i_length="744"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="48741" e_stop="48824" e_length="84"/>
          </exon>
          <intron i_serial="9" don_prob="0.957" acc_prob="0.667">
            <gDNA_intron_boundary i_start="48825" i_stop="48922" i_length="98"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="48923" e_stop="49057" e_length="135"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49058" i_stop="50359" i_length="1302"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="50360" e_stop="50505" e_length="146"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.979">
            <gDNA_intron_boundary i_start="50506" i_stop="51087" i_length="582"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="51088" e_stop="51503" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41598" stop="42337"/>
              <exon start="43315" stop="43528"/>
              <exon start="43610" stop="43690"/>
              <exon start="44196" stop="44288"/>
              <exon start="44374" stop="44460"/>
              <exon start="47245" stop="47345"/>
              <exon start="47811" stop="47844"/>
              <exon start="47922" stop="47996"/>
              <exon start="48741" stop="48824"/>
              <exon start="48923" stop="49057"/>
              <exon start="50360" stop="50505"/>
              <exon start="51088" stop="51462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E741064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41634" stop="42258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41637" stop="42290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41648" stop="42172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43650" stop="43690"/>
              <exon start="44196" stop="44288"/>
              <exon start="44374" stop="44460"/>
              <exon start="47245" stop="47345"/>
              <exon start="47811" stop="47844"/>
              <exon start="47922" stop="47996"/>
              <exon start="48741" stop="48824"/>
              <exon start="48923" stop="49057"/>
              <exon start="50360" stop="50495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43651" stop="43690"/>
              <exon start="44196" stop="44288"/>
              <exon start="44374" stop="44460"/>
              <exon start="47245" stop="47345"/>
              <exon start="47811" stop="47844"/>
              <exon start="47922" stop="47996"/>
              <exon start="48741" stop="48824"/>
              <exon start="48923" stop="49030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47929" stop="47996"/>
              <exon start="48741" stop="48824"/>
              <exon start="48923" stop="49057"/>
              <exon start="50360" stop="50505"/>
              <exon start="51088" stop="51462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51122" stop="51497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51124" stop="51503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229911" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTTACTTGAATTTTCAGTCTCTTCTCCCAGCCGCCATTAAAACCAGCACTCGCAAACTCCAATTTCTCTTCTCCGGCAATGGCGTCTATCACCGCAAATCATCCAATCTCCGGTAAACCATTAATCTCATTCCGTCCCAAAAACCCTTTACTTCAAACCCAAACTCTCTTCAATTTCAAACCATCAATCTCCAAGCACTCCAATTCTTCATTTTCCATTCCCGTTGTCCGCTGCTCAATCCGCCGTAGACCGGAATATACTCCGAGTCACATTCCCGATCCAAACTATGTCCGGATATTCGACACCACTCTCCGTGATGGCGAACAATCACCAGGGGCTACAATGACTACAAAGGAGAAACTGGATGTTGCACGTCAGTTAGCTAAGCTTGGTGTTGATATAATTGAGGCTGGTTTTCCTGCTTCTTCTGAAGCTGATCTTGAAGCTGTGAAATTGATAGCTAAGGAAGTTGGGAATGGTGTTTATGAAGAGGGATATGTTCCGGTTATTTGTGGATTGGCGAGGTGTAATAAGAAGGATATTGATAAGGCGTGGGAGGCTGTGAAGTATGCTAAGAAACCGAGGATTCATACGTTTATTGCTACAAGTGAGATACATATGAATTATAAGCTGAAAATGAGTAGAGATCAAGTTGTTGAGAAAGCTAGGAGTATGGTGGCTTATGCAAGGAGTATTGGGTGTGAGGATGTTGAATTTAGCCCTGAAGATGCTGGAAG : ATCTGATCCAGAGTTTCTTTATCATATCCTTGGAGAGGTTATCAAAGCTGGGGCAACAACCCTTAACATCCCTGATACTGTTGGATACACTGTACCCGAAGAATTTGGACAATTGATTGCTAAAATAAAAGCGAATACCCCAGGAGTTGAAGATGTGATCATTTCAACACACTGCCAGAACGATCTTGGGCTTTCTACTGCCAACACCTTAGCT : GGAGCATGTGCAGGTGCAAGACAATTGGAAGTGACCATCAATGGAATTGGTGAAAGAGCTGGAAATGCTTCTTTAGAGGAG : GTTGTAATGGCCTTAAAGTGTCGTGGAGAGCAAGTACTAGGTGGCCTATATACAGGGATTAATACACAACATATACTCATGTCAAGCAAGATG : GTAGAGGAGTATTCCGGACTTCATGTGCAGCCACACAAAGCCATTGTTGGAGCTAATGCCTTTGCTCATGAAAGTGGCATCCATCAG : GATGGAATGTTAAAACACAAAGATACATATGAGATTATATCTCCTGAAGATATTGGGCTTAATCGTGCTAATGAATCTGGTATTGTCCTTGGGAAACTCAG : TGGGCGTCATGCTTTGCAAGCCAAAATGCTTGAG : CTTGGATACGAGATTGAGGGCAAAGAACTTGATGACCTGTTCTGGCGATTCAAATCTGTGGCTGAGAAGAAAAAG : AAAATTACAGATGATGACCTGGTAGCACTGATGTCAGATGAGGTTTTCCAGCCTCAATTTGTGTGGCAACTTCAAAATGTACAG : GTTACTTCTGGAAGTCTTGGCCTTTCTACAGCAACTGTTAAGCTCATTGATGCTGATGGTCGAGAGCATATTTCTTGTTCTGTTGGAACGGGGCCAGTTGACGCGGCTTATAAGGCAGTTGATCTCATTGTTAAG : GTACCTGTAACACTCCTTGAGTATTCCATGAATGCAGTCACACAAGGTATAGATGCTATAGCTTCAACCAGAGTCTTAATTCGTGGAGAAAATGGCCATACATCAACCCATGCCGTAACTGGAGAGACTATTCACCGTACATTTAG : TGGAACCGGAGCAGATATGGATATTGTCATCTCCAGTGTCCGAGCCTATGTTGGTGCATTGAATAAGATGATGAGTTTCAGAAAACTAATGGCGAAAAATAACAAACCCGAAAGCAGTGCAGTCGTATAGGTACTTCTGTGCAAATCAAGGTTATGGAACTTTTGCAACTGCACTGGAGCTTTATCATTTGTACAAAATGTAGGAGTCTGTTCAAAGAATTTGAGCCTGTAGTTTTCAAGAAAACAAAGCTTAATATGTCTGGTAGTGCTTGAAAATCATCTAAGTTTATGGTGTATCAGTTGGAACATTAGACACATTGTCCATATAACTTTGTTCATGCTCCCGTTTAACTAATTTATGAATCTACATACCACGCAAGATTTTCGAAATGATTTCAGAAATTATGAAAATCTCT</gDNA_template>
            <first_frame> S  L  T  *  I  F  S  L  F  S  Q  P  P  L  K  P  A  L  A  N  S  N  F  S  S  P  A  M  A  S  I  T  A  N  H  P  I  S  G  K  P  L  I  S  F  R  P  K  N  P  L  L  Q  T  Q  T  L  F  N  F  K  P  S  I  S  K  H  S  N  S  S  F  S  I  P  V  V  R  C  S  I  R  R  R  P  E  Y  T  P  S  H  I  P  D  P  N  Y  V  R  I  F  D  T  T  L  R  D  G  E  Q  S  P  G  A  T  M  T  T  K  E  K  L  D  V  A  R  Q  L  A  K  L  G  V  D  I  I  E  A  G  F  P  A  S  S  E  A  D  L  E  A  V  K  L  I  A  K  E  V  G  N  G  V  Y  E  E  G  Y  V  P  V  I  C  G  L  A  R  C  N  K  K  D  I  D  K  A  W  E  A  V  K  Y  A  K  K  P  R  I  H  T  F  I  A  T  S  E  I  H  M  N  Y  K  L  K  M  S  R  D  Q  V  V  E  K  A  R  S  M  V  A  Y  A  R  S  I  G  C  E  D  V  E  F  S  P  E  D  A  G  R :   S  D  P  E  F  L  Y  H  I  L  G  E  V  I  K  A  G  A  T  T  L  N  I  P  D  T  V  G  Y  T  V  P  E  E  F  G  Q  L  I  A  K  I  K  A  N  T  P  G  V  E  D  V  I  I  S  T  H  C  Q  N  D  L  G  L  S  T  A  N  T  L  A  :  G  A  C  A  G  A  R  Q  L  E  V  T  I  N  G  I  G  E  R  A  G  N  A  S  L  E  E  :  V  V  M  A  L  K  C  R  G  E  Q  V  L  G  G  L  Y  T  G  I  N  T  Q  H  I  L  M  S  S  K  M  :  V  E  E  Y  S  G  L  H  V  Q  P  H  K  A  I  V  G  A  N  A  F  A  H  E  S  G  I  H  Q  :  D  G  M  L  K  H  K  D  T  Y  E  I  I  S  P  E  D  I  G  L  N  R  A  N  E  S  G  I  V  L  G  K  L  S :   G  R  H  A  L  Q  A  K  M  L  E  :  L  G  Y  E  I  E  G  K  E  L  D  D  L  F  W  R  F  K  S  V  A  E  K  K  K  :  K  I  T  D  D  D  L  V  A  L  M  S  D  E  V  F  Q  P  Q  F  V  W  Q  L  Q  N  V  Q  :  V  T  S  G  S  L  G  L  S  T  A  T  V  K  L  I  D  A  D  G  R  E  H  I  S  C  S  V  G  T  G  P  V  D  A  A  Y  K  A  V  D  L  I  V  K  :  V  P  V  T  L  L  E  Y  S  M  N  A  V  T  Q  G  I  D  A  I  A  S  T  R  V  L  I  R  G  E  N  G  H  T  S  T  H  A  V  T  G  E  T  I  H  R  T  F  S :   G  T  G  A  D  M  D  I  V  I  S  S  V  R  A  Y  V  G  A  L  N  K  M  M  S  F  R  K  L  M  A  K  N  N  K  P  E  S  S  A  V  V  *  V  L  L  C  K  S  R  L  W  N  F  C  N  C  T  G  A  L  S  F  V  Q  N  V  G  V  C  S  K  N  L  S  L  *  F  S  R  K  Q  S  L  I  C  L  V  V  L  E  N  H  L  S  L  W  C  I  S  W  N  I  R  H  I  V  H  I  T  L  F  M  L  P  F  N  *  F  M  N  L  H  T  T  Q  D  F  R  N  D  F  R  N  Y  E  N  L  </first_frame>
            <second_frame>  L  L  L  E  F  S  V  S  S  P  S  R  H  *  N  Q  H  S  Q  T  P  I  S  L  L  R  Q  W  R  L  S  P  Q  I  I  Q  S  P  V  N  H  *  S  H  S  V  P  K  T  L  Y  F  K  P  K  L  S  S  I  S  N  H  Q  S  P  S  T  P  I  L  H  F  P  F  P  L  S  A  A  Q  S  A  V  D  R  N  I  L  R  V  T  F  P  I  Q  T  M  S  G  Y  S  T  P  L  S  V  M  A  N  N  H  Q  G  L  Q  *  L  Q  R  R  N  W  M  L  H  V  S  *  L  S  L  V  L  I  *  L  R  L  V  F  L  L  L  L  K  L  I  L  K  L  *  N  *  *  L  R  K  L  G  M  V  F  M  K  R  D  M  F  R  L  F  V  D  W  R  G  V  I  R  R  I  L  I  R  R  G  R  L  *  S  M  L  R  N  R  G  F  I  R  L  L  L  Q  V  R  Y  I  *  I  I  S  *  K  *  V  E  I  K  L  L  R  K  L  G  V  W  W  L  M  Q  G  V  L  G  V  R  M  L  N  L  A  L  K  M  L  E   : D  L  I  Q  S  F  F  I  I  S  L  E  R  L  S  K  L  G  Q  Q  P  L  T  S  L  I  L  L  D  T  L  Y  P  K  N  L  D  N  *  L  L  K  *  K  R  I  P  Q  E  L  K  M  *  S  F  Q  H  T  A  R  T  I  L  G  F  L  L  P  T  P  *  L :   E  H  V  Q  V  Q  D  N  W  K  *  P  S  M  E  L  V  K  E  L  E  M  L  L  *  R  R :   L  *  W  P  *  S  V  V  E  S  K  Y  *  V  A  Y  I  Q  G  L  I  H  N  I  Y  S  C  Q  A  R  W :   *  R  S  I  P  D  F  M  C  S  H  T  K  P  L  L  E  L  M  P  L  L  M  K  V  A  S  I  R :   M  E  C  *  N  T  K  I  H  M  R  L  Y  L  L  K  I  L  G  L  I  V  L  M  N  L  V  L  S  L  G  N  S   : V  G  V  M  L  C  K  P  K  C  L  S :   L  D  T  R  L  R  A  K  N  L  M  T  C  S  G  D  S  N  L  W  L  R  R  K  R :   K  L  Q  M  M  T  W  *  H  *  C  Q  M  R  F  S  S  L  N  L  C  G  N  F  K  M  Y  R :   L  L  L  E  V  L  A  F  L  Q  Q  L  L  S  S  L  M  L  M  V  E  S  I  F  L  V  L  L  E  R  G  Q  L  T  R  L  I  R  Q  L  I  S  L  L  R :   Y  L  *  H  S  L  S  I  P  *  M  Q  S  H  K  V  *  M  L  *  L  Q  P  E  S  *  F  V  E  K  M  A  I  H  Q  P  M  P  *  L  E  R  L  F  T  V  H  L   : V  E  P  E  Q  I  W  I  L  S  S  P  V  S  E  P  M  L  V  H  *  I  R  *  *  V  S  E  N  *  W  R  K  I  T  N  P  K  A  V  Q  S  Y  R  Y  F  C  A  N  Q  G  Y  G  T  F  A  T  A  L  E  L  Y  H  L  Y  K  M  *  E  S  V  Q  R  I  *  A  C  S  F  Q  E  N  K  A  *  Y  V  W  *  C  L  K  I  I  *  V  Y  G  V  S  V  G  T  L  D  T  L  S  I  *  L  C  S  C  S  R  L  T  N  L  *  I  Y  I  P  R  K  I  F  E  M  I  S  E  I  M  K  I  S </second_frame>
            <third_frame>   S  Y  L  N  F  Q  S  L  L  P  A  A  I  K  T  S  T  R  K  L  Q  F  L  F  S  G  N  G  V  Y  H  R  K  S  S  N  L  R  *  T  I  N  L  I  P  S  Q  K  P  F  T  S  N  P  N  S  L  Q  F  Q  T  I  N  L  Q  A  L  Q  F  F  I  F  H  S  R  C  P  L  L  N  P  P  *  T  G  I  Y  S  E  S  H  S  R  S  K  L  C  P  D  I  R  H  H  S  P  *  W  R  T  I  T  R  G  Y  N  D  Y  K  G  E  T  G  C  C  T  S  V  S  *  A  W  C  *  Y  N  *  G  W  F  S  C  F  F  *  S  *  S  *  S  C  E  I  D  S  *  G  S  W  E  W  C  L  *  R  G  I  C  S  G  Y  L  W  I  G  E  V  *  *  E  G  Y  *  *  G  V  G  G  C  E  V  C  *  E  T  E  D  S  Y  V  Y  C  Y  K  *  D  T  Y  E  L  *  A  E  N  E  *  R  S  S  C  *  E  S  *  E  Y  G  G  L  C  K  E  Y  W  V  *  G  C  *  I  *  P  *  R  C  W  K  :  I  *  S  R  V  S  L  S  Y  P  W  R  G  Y  Q  S  W  G  N  N  P  *  H  P  *  Y  C  W  I  H  C  T  R  R  I  W  T  I  D  C  *  N  K  S  E  Y  P  R  S  *  R  C  D  H  F  N  T  L  P  E  R  S  W  A  F  Y  C  Q  H  L  S   : W  S  M  C  R  C  K  T  I  G  S  D  H  Q  W  N  W  *  K  S  W  K  C  F  F  R  G   : G  C  N  G  L  K  V  S  W  R  A  S  T  R  W  P  I  Y  R  D  *  Y  T  T  Y  T  H  V  K  Q  D   : G  R  G  V  F  R  T  S  C  A  A  T  Q  S  H  C  W  S  *  C  L  C  S  *  K  W  H  P  S   : G  W  N  V  K  T  Q  R  Y  I  *  D  Y  I  S  *  R  Y  W  A  *  S  C  *  *  I  W  Y  C  P  W  E  T  Q  :  W  A  S  C  F  A  S  Q  N  A  *   : A  W  I  R  D  *  G  Q  R  T  *  *  P  V  L  A  I  Q  I  C  G  *  E  E  K   : E  N  Y  R  *  *  P  G  S  T  D  V  R  *  G  F  P  A  S  I  C  V  A  T  S  K  C  T   : G  Y  F  W  K  S  W  P  F  Y  S  N  C  *  A  H  *  C  *  W  S  R  A  Y  F  L  F  C  W  N  G  A  S  *  R  G  L  *  G  S  *  S  H  C  *   : G  T  C  N  T  P  *  V  F  H  E  C  S  H  T  R  Y  R  C  Y  S  F  N  Q  S  L  N  S  W  R  K  W  P  Y  I  N  P  C  R  N  W  R  D  Y  S  P  Y  I  *  :  W  N  R  S  R  Y  G  Y  C  H  L  Q  C  P  S  L  C  W  C  I  E  *  D  D  E  F  Q  K  T  N  G  E  K  *  Q  T  R  K  Q  C  S  R  I  G  T  S  V  Q  I  K  V  M  E  L  L  Q  L  H  W  S  F  I  I  C  T  K  C  R  S  L  F  K  E  F  E  P  V  V  F  K  K  T  K  L  N  M  S  G  S  A  *  K  S  S  K  F  M  V  Y  Q  L  E  H  *  T  H  C  P  Y  N  F  V  H  A  P  V  *  L  I  Y  E  S  T  Y  H  A  R  F  S  K  *  F  Q  K  L  *  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0261A18.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41610" stop="42337"/>
                    <exon start="43315" stop="43528"/>
                    <exon start="43610" stop="43690"/>
                    <exon start="44196" stop="44288"/>
                    <exon start="44374" stop="44460"/>
                    <exon start="47245" stop="47345"/>
                    <exon start="47811" stop="47844"/>
                    <exon start="47922" stop="47996"/>
                    <exon start="48741" stop="48824"/>
                    <exon start="48923" stop="49057"/>
                    <exon start="50360" stop="50505"/>
                    <exon start="51088" stop="51217"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1905</number_coding_nucleotides>
                  <number_encoded_amino_acids>635</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFSLFSQPPLKPALANSNFSSPAMASITANHPISGKPLISFRPKNPLLQTQTLFNFKPSISKHSNSSFSIPVVRCSIRRRPEYTPSHIPDPNYVRIFDTTLRDGEQSPGATMTTKEKLDVARQLAKLGVDIIEAGFPASSEADLEAVKLIAKEVGNGVYEEGYVPVICGLARCNKKDIDKAWEAVKYAKKPRIHTFIATSEIHMNYKLKMSRDQVVEKARSMVAYARSIGCEDVEFSPEDAGRSDPEFLYHILGEVIKAGATTLNIPDTVGYTVPEEFGQLIAKIKANTPGVEDVIISTHCQNDLGLSTANTLAGACAGARQLEVTINGIGERAGNASLEEVVMALKCRGEQVLGGLYTGINTQHILMSSKMVEEYSGLHVQPHKAIVGANAFAHESGIHQDGMLKHKDTYEIISPEDIGLNRANESGIVLGKLSGRHALQAKMLELGYEIEGKELDDLFWRFKSVAEKKKKITDDDLVALMSDEVFQPQFVWQLQNVQVTSGSLGLSTATVKLIDADGREHISCSVGTGPVDAAYKAVDLIVKVPVTLLEYSMNAVTQGIDAIASTRVLIRGENGHTSTHAVTGETIHRTFSGTGADMDIVISSVRAYVGALNKMMSFRKLMAKNNKPESSAVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="81123" PGL_stop="88792"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81123" e_stop="81289"/>
            <exon e_start="85029" e_stop="85087"/>
            <exon e_start="86175" e_stop="86356"/>
            <exon e_start="86837" e_stop="87283"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81123" e_stop="81289" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.947">
            <gDNA_intron_boundary i_start="81290" i_stop="85028" i_length="3739"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85029" e_stop="85087" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.921" acc_prob="0.995">
            <gDNA_intron_boundary i_start="85088" i_stop="86174" i_length="1087"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86175" e_stop="86356" e_length="182"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.958">
            <gDNA_intron_boundary i_start="86357" i_stop="86836" i_length="480"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="86837" e_stop="87283" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81123" stop="81289"/>
              <exon start="85029" stop="85087"/>
              <exon start="86175" stop="86356"/>
              <exon start="86837" stop="87283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81135" stop="81289"/>
              <exon start="85029" stop="85087"/>
              <exon start="86175" stop="86356"/>
              <exon start="86837" stop="86908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81135" stop="81289"/>
              <exon start="85029" stop="85087"/>
              <exon start="86175" stop="86324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277244" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81137" stop="81289"/>
              <exon start="85029" stop="85087"/>
              <exon start="86175" stop="86356"/>
              <exon start="86837" stop="87117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81143" stop="81289"/>
              <exon start="85029" stop="85087"/>
              <exon start="86175" stop="86356"/>
              <exon start="86837" stop="87117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81235" stop="81289"/>
              <exon start="85029" stop="85087"/>
              <exon start="86175" stop="86356"/>
              <exon start="86837" stop="87117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716279" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGAGAGAAATGGGTGTGATCCAGGTAGCATTGCTGTGCTTTGTTGTTGGAGTTTTGGGGGCAAAAGCTGAGCAGTTGAGCACGAAAGAGTGTGAAAATCTCGGGTTTACGGGTTTAGCTCTATGCTCCGATTGTAGGACTCTTGCTGAGTATGTCAAAGATCAAG : AGTTGGTGTCTGAATGTTTGAGCTGTTGCACAGAAGACTCTGATGATGCCATGAGTAAG : GTTGTTTATTCTGGAGCAGTTTTGGAAGTCTGCATGAGAAAACTAGTTTTCTATCCCGAAGTCGTTGGGTTCATTGAAGAAGAGAAAGACCAATTCCCTTTTGTAAAAGTTCAATATGCATTTAATTCTCCACCAAAGTTGATCATGTTGGATGATCACGGAGAGCAAAAGGAAACCATTAG : AATTGATAACTGGAAACGTGAGCACATATTGCAGTTCTTGAAAGAGAAGGTTAAGCCATCATCCGATATCTAATGTGGCTGGTAATCTAGTCCCGTTTTGATCAAGAGCAGTGTTAAGTGTTCAGCCTGCATCTAGTTTCAGAAAACTCCAGTTCCCCACTTATTGTTTTTAAGAAACTGTGAGATGAGATTAATTGCTACACACAAGTTCAAAAGCTACTTTCATTTACAAAACATGCAACTGGATCCTTGTGCTTTTGACGTATCGTTTGGTTTCGTCAGTCCTGCTCTCTCTCTCTCTCTCTTTTTCTATAACTTTCTTTAATTACTCATTACCAGATTATTGTTAGGAATACCCCAGAGAAGGGAACACATCATATTATGAAGGATAATTACATGAGGAGTTGGAATATCCAGTTAGCTGTGCAAGCCTGCTTCTCTATAATA</gDNA_template>
            <first_frame> R  E  R  N  G  C  D  P  G  S  I  A  V  L  C  C  W  S  F  G  G  K  S  *  A  V  E  H  E  R  V  *  K  S  R  V  Y  G  F  S  S  M  L  R  L  *  D  S  C  *  V  C  Q  R  S  R :   V  G  V  *  M  F  E  L  L  H  R  R  L  *  *  C  H  E  *   : G  C  L  F  W  S  S  F  G  S  L  H  E  K  T  S  F  L  S  R  S  R  W  V  H  *  R  R  E  R  P  I  P  F  C  K  S  S  I  C  I  *  F  S  T  K  V  D  H  V  G  *  S  R  R  A  K  G  N  H  *  :  N  *  *  L  E  T  *  A  H  I  A  V  L  E  R  E  G  *  A  I  I  R  Y  L  M  W  L  V  I  *  S  R  F  D  Q  E  Q  C  *  V  F  S  L  H  L  V  S  E  N  S  S  S  P  L  I  V  F  K  K  L  *  D  E  I  N  C  Y  T  Q  V  Q  K  L  L  S  F  T  K  H  A  T  G  S  L  C  F  *  R  I  V  W  F  R  Q  S  C  S  L  S  L  S  L  F  L  *  L  S  L  I  T  H  Y  Q  I  I  V  R  N  T  P  E  K  G  T  H  H  I  M  K  D  N  Y  M  R  S  W  N  I  Q  L  A  V  Q  A  C  F  S  I  I </first_frame>
            <second_frame>  E  R  E  M  G  V  I  Q  V  A  L  L  C  F  V  V  G  V  L  G  A  K  A  E  Q  L  S  T  K  E  C  E  N  L  G  F  T  G  L  A  L  C  S  D  C  R  T  L  A  E  Y  V  K  D  Q   : E  L  V  S  E  C  L  S  C  C  T  E  D  S  D  D  A  M  S  K  :  V  V  Y  S  G  A  V  L  E  V  C  M  R  K  L  V  F  Y  P  E  V  V  G  F  I  E  E  E  K  D  Q  F  P  F  V  K  V  Q  Y  A  F  N  S  P  P  K  L  I  M  L  D  D  H  G  E  Q  K  E  T  I  R :   I  D  N  W  K  R  E  H  I  L  Q  F  L  K  E  K  V  K  P  S  S  D  I  *  C  G  W  *  S  S  P  V  L  I  K  S  S  V  K  C  S  A  C  I  *  F  Q  K  T  P  V  P  H  L  L  F  L  R  N  C  E  M  R  L  I  A  T  H  K  F  K  S  Y  F  H  L  Q  N  M  Q  L  D  P  C  A  F  D  V  S  F  G  F  V  S  P  A  L  S  L  S  L  F  F  Y  N  F  L  *  L  L  I  T  R  L  L  L  G  I  P  Q  R  R  E  H  I  I  L  *  R  I  I  T  *  G  V  G  I  S  S  *  L  C  K  P  A  S  L  *   </second_frame>
            <third_frame>   R  E  K  W  V  *  S  R  *  H  C  C  A  L  L  L  E  F  W  G  Q  K  L  S  S  *  A  R  K  S  V  K  I  S  G  L  R  V  *  L  Y  A  P  I  V  G  L  L  L  S  M  S  K  I  K  :  S  W  C  L  N  V  *  A  V  A  Q  K  T  L  M  M  P  *  V  R :   L  F  I  L  E  Q  F  W  K  S  A  *  E  N  *  F  S  I  P  K  S  L  G  S  L  K  K  R  K  T  N  S  L  L  *  K  F  N  M  H  L  I  L  H  Q  S  *  S  C  W  M  I  T  E  S  K  R  K  P  L   : E  L  I  T  G  N  V  S  T  Y  C  S  S  *  K  R  R  L  S  H  H  P  I  S  N  V  A  G  N  L  V  P  F  *  S  R  A  V  L  S  V  Q  P  A  S  S  F  R  K  L  Q  F  P  T  Y  C  F  *  E  T  V  R  *  D  *  L  L  H  T  S  S  K  A  T  F  I  Y  K  T  C  N  W  I  L  V  L  L  T  Y  R  L  V  S  S  V  L  L  S  L  S  L  S  F  S  I  T  F  F  N  Y  S  L  P  D  Y  C  *  E  Y  P  R  E  G  N  T  S  Y  Y  E  G  *  L  H  E  E  L  E  Y  P  V  S  C  A  S  L  L  L  Y  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0261A18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81124" stop="81289"/>
                    <exon start="85029" stop="85087"/>
                    <exon start="86175" stop="86356"/>
                    <exon start="86837" stop="86909"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EREMGVIQVALLCFVVGVLGAKAEQLSTKECENLGFTGLALCSDCRTLAEYVKDQELVSECLSCCTEDSDDAMSKVVYSGAVLEVCMRKLVFYPEVVGFIEEEKDQFPFVKVQYAFNSPPKLIMLDDHGEQKETIRIDNWKREHILQFLKEKVKPSSDI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="81135" e_stop="81289"/>
            <exon e_start="85029" e_stop="85087"/>
            <exon e_start="86175" e_stop="86356"/>
            <exon e_start="86837" e_stop="87117"/>
            <exon e_start="88775" e_stop="88792"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.288" e_score="1.000"/>
          <exon-only e_score="0.722"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81135" e_stop="81289" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.947">
            <gDNA_intron_boundary i_start="81290" i_stop="85028" i_length="3739"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85029" e_stop="85087" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.921" acc_prob="0.995">
            <gDNA_intron_boundary i_start="85088" i_stop="86174" i_length="1087"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86175" e_stop="86356" e_length="182"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.958">
            <gDNA_intron_boundary i_start="86357" i_stop="86836" i_length="480"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86837" e_stop="87117" e_length="281"/>
          </exon>
          <intron i_serial="4" don_prob="0.727" acc_prob="0.288">
            <gDNA_intron_boundary i_start="87118" i_stop="88774" i_length="1657"/>
          </intron>
          <exon e_serial="5" e_score="0.722">
            <gDNA_exon_boundary e_start="88775" e_stop="88792" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81135" stop="81289"/>
              <exon start="85029" stop="85087"/>
              <exon start="86175" stop="86356"/>
              <exon start="86837" stop="86908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81135" stop="81289"/>
              <exon start="85029" stop="85087"/>
              <exon start="86175" stop="86324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277244" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81137" stop="81289"/>
              <exon start="85029" stop="85087"/>
              <exon start="86175" stop="86356"/>
              <exon start="86837" stop="87117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81143" stop="81289"/>
              <exon start="85029" stop="85087"/>
              <exon start="86175" stop="86356"/>
              <exon start="86837" stop="87117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81235" stop="81289"/>
              <exon start="85029" stop="85087"/>
              <exon start="86175" stop="86356"/>
              <exon start="86837" stop="87117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85043" stop="85087"/>
              <exon start="86175" stop="86356"/>
              <exon start="86837" stop="87117"/>
              <exon start="88775" stop="88792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203138" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGTGTGATCCAGGTAGCATTGCTGTGCTTTGTTGTTGGAGTTTTGGGGGCAAAAGCTGAGCAGTTGAGCACGAAAGAGTGTGAAAATCTCGGGTTTACGGGTTTAGCTCTATGCTCCGATTGTAGGACTCTTGCTGAGTATGTCAAAGATCAAG : AGTTGGTGTCTGAATGTTTGAGCTGTTGCACAGAAGACTCTGATGATGCCATGAGTAAG : GTTGTTTATTCTGGAGCAGTTTTGGAAGTCTGCATGAGAAAACTAGTTTTCTATCCCGAAGTCGTTGGGTTCATTGAAGAAGAGAAAGACCAATTCCCTTTTGTAAAAGTTCAATATGCATTTAATTCTCCACCAAAGTTGATCATGTTGGATGATCACGGAGAGCAAAAGGAAACCATTAG : AATTGATAACTGGAAACGTGAGCACATATTGCAGTTCTTGAAAGAGAAGGTTAAGCCATCATCCGATATCTAATGTGGCTGGTAATCTAGTCCCGTTTTGATCAAGAGCAGTGTTAAGTGTTCAGCCTGCATCTAGTTTCAGAAAACTCCAGTTCCCCACTTATTGTTTTTAAGAAACTGTGAGATGAGATTAATTGCTACACACAAGTTCAAAAGCTACTTTCATTTACAAAACATGCAACTGGATCCTTGTGCTTTTGACGTATCGTTTGGTTTCGTCA : TACAAAAAACAAACACAA</gDNA_template>
            <first_frame> G  C  D  P  G  S  I  A  V  L  C  C  W  S  F  G  G  K  S  *  A  V  E  H  E  R  V  *  K  S  R  V  Y  G  F  S  S  M  L  R  L  *  D  S  C  *  V  C  Q  R  S  R :   V  G  V  *  M  F  E  L  L  H  R  R  L  *  *  C  H  E  *   : G  C  L  F  W  S  S  F  G  S  L  H  E  K  T  S  F  L  S  R  S  R  W  V  H  *  R  R  E  R  P  I  P  F  C  K  S  S  I  C  I  *  F  S  T  K  V  D  H  V  G  *  S  R  R  A  K  G  N  H  *  :  N  *  *  L  E  T  *  A  H  I  A  V  L  E  R  E  G  *  A  I  I  R  Y  L  M  W  L  V  I  *  S  R  F  D  Q  E  Q  C  *  V  F  S  L  H  L  V  S  E  N  S  S  S  P  L  I  V  F  K  K  L  *  D  E  I  N  C  Y  T  Q  V  Q  K  L  L  S  F  T  K  H  A  T  G  S  L  C  F  *  R  I  V  W  F  R  H :   T  K  N  K  H   </first_frame>
            <second_frame>  G  V  I  Q  V  A  L  L  C  F  V  V  G  V  L  G  A  K  A  E  Q  L  S  T  K  E  C  E  N  L  G  F  T  G  L  A  L  C  S  D  C  R  T  L  A  E  Y  V  K  D  Q   : E  L  V  S  E  C  L  S  C  C  T  E  D  S  D  D  A  M  S  K  :  V  V  Y  S  G  A  V  L  E  V  C  M  R  K  L  V  F  Y  P  E  V  V  G  F  I  E  E  E  K  D  Q  F  P  F  V  K  V  Q  Y  A  F  N  S  P  P  K  L  I  M  L  D  D  H  G  E  Q  K  E  T  I  R :   I  D  N  W  K  R  E  H  I  L  Q  F  L  K  E  K  V  K  P  S  S  D  I  *  C  G  W  *  S  S  P  V  L  I  K  S  S  V  K  C  S  A  C  I  *  F  Q  K  T  P  V  P  H  L  L  F  L  R  N  C  E  M  R  L  I  A  T  H  K  F  K  S  Y  F  H  L  Q  N  M  Q  L  D  P  C  A  F  D  V  S  F  G  F  V   : I  Q  K  T  N  T  </second_frame>
            <third_frame>   V  *  S  R  *  H  C  C  A  L  L  L  E  F  W  G  Q  K  L  S  S  *  A  R  K  S  V  K  I  S  G  L  R  V  *  L  Y  A  P  I  V  G  L  L  L  S  M  S  K  I  K  :  S  W  C  L  N  V  *  A  V  A  Q  K  T  L  M  M  P  *  V  R :   L  F  I  L  E  Q  F  W  K  S  A  *  E  N  *  F  S  I  P  K  S  L  G  S  L  K  K  R  K  T  N  S  L  L  *  K  F  N  M  H  L  I  L  H  Q  S  *  S  C  W  M  I  T  E  S  K  R  K  P  L   : E  L  I  T  G  N  V  S  T  Y  C  S  S  *  K  R  R  L  S  H  H  P  I  S  N  V  A  G  N  L  V  P  F  *  S  R  A  V  L  S  V  Q  P  A  S  S  F  R  K  L  Q  F  P  T  Y  C  F  *  E  T  V  R  *  D  *  L  L  H  T  S  S  K  A  T  F  I  Y  K  T  C  N  W  I  L  V  L  L  T  Y  R  L  V  S  S  :  Y  K  K  Q  T  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0261A18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81136" stop="81289"/>
                    <exon start="85029" stop="85087"/>
                    <exon start="86175" stop="86356"/>
                    <exon start="86837" stop="86909"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVIQVALLCFVVGVLGAKAEQLSTKECENLGFTGLALCSDCRTLAEYVKDQELVSECLSCCTEDSDDAMSKVVYSGAVLEVCMRKLVFYPEVVGFIEEEKDQFPFVKVQYAFNSPPKLIMLDDHGEQKETIRIDNWKREHILQFLKEKVKPSSDI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="85025" e_stop="85087"/>
            <exon e_start="86175" e_stop="86356"/>
            <exon e_start="86837" e_stop="87117"/>
            <exon e_start="88775" e_stop="88792"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.921" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.288" e_score="1.000"/>
          <exon-only e_score="0.722"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85025" e_stop="85087" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.921" acc_prob="0.995">
            <gDNA_intron_boundary i_start="85088" i_stop="86174" i_length="1087"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86175" e_stop="86356" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.958">
            <gDNA_intron_boundary i_start="86357" i_stop="86836" i_length="480"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86837" e_stop="87117" e_length="281"/>
          </exon>
          <intron i_serial="3" don_prob="0.727" acc_prob="0.288">
            <gDNA_intron_boundary i_start="87118" i_stop="88774" i_length="1657"/>
          </intron>
          <exon e_serial="4" e_score="0.722">
            <gDNA_exon_boundary e_start="88775" e_stop="88792" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85025" stop="85087"/>
              <exon start="86175" stop="86356"/>
              <exon start="86837" stop="87117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85026" stop="85087"/>
              <exon start="86175" stop="86356"/>
              <exon start="86837" stop="87072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85043" stop="85087"/>
              <exon start="86175" stop="86356"/>
              <exon start="86837" stop="87117"/>
              <exon start="88775" stop="88792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203138" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAGAGTTGGTGTCTGAATGTTTGAGCTGTTGCACAGAAGACTCTGATGATGCCATGAGTAAG : GTTGTTTATTCTGGAGCAGTTTTGGAAGTCTGCATGAGAAAACTAGTTTTCTATCCCGAAGTCGTTGGGTTCATTGAAGAAGAGAAAGACCAATTCCCTTTTGTAAAAGTTCAATATGCATTTAATTCTCCACCAAAGTTGATCATGTTGGATGATCACGGAGAGCAAAAGGAAACCATTAG : AATTGATAACTGGAAACGTGAGCACATATTGCAGTTCTTGAAAGAGAAGGTTAAGCCATCATCCGATATCTAATGTGGCTGGTAATCTAGTCCCGTTTTGATCAAGAGCAGTGTTAAGTGTTCAGCCTGCATCTAGTTTCAGAAAACTCCAGTTCCCCACTTATTGTTTTTAAGAAACTGTGAGATGAGATTAATTGCTACACACAAGTTCAAAAGCTACTTTCATTTACAAAACATGCAACTGGATCCTTGTGCTTTTGACGTATCGTTTGGTTTCGTCA : TACAAAAAACAAACACAA</gDNA_template>
            <first_frame> T  E  L  V  S  E  C  L  S  C  C  T  E  D  S  D  D  A  M  S  K  :  V  V  Y  S  G  A  V  L  E  V  C  M  R  K  L  V  F  Y  P  E  V  V  G  F  I  E  E  E  K  D  Q  F  P  F  V  K  V  Q  Y  A  F  N  S  P  P  K  L  I  M  L  D  D  H  G  E  Q  K  E  T  I  R :   I  D  N  W  K  R  E  H  I  L  Q  F  L  K  E  K  V  K  P  S  S  D  I  *  C  G  W  *  S  S  P  V  L  I  K  S  S  V  K  C  S  A  C  I  *  F  Q  K  T  P  V  P  H  L  L  F  L  R  N  C  E  M  R  L  I  A  T  H  K  F  K  S  Y  F  H  L  Q  N  M  Q  L  D  P  C  A  F  D  V  S  F  G  F  V   : I  Q  K  T  N  T  </first_frame>
            <second_frame>  Q  S  W  C  L  N  V  *  A  V  A  Q  K  T  L  M  M  P  *  V  R :   L  F  I  L  E  Q  F  W  K  S  A  *  E  N  *  F  S  I  P  K  S  L  G  S  L  K  K  R  K  T  N  S  L  L  *  K  F  N  M  H  L  I  L  H  Q  S  *  S  C  W  M  I  T  E  S  K  R  K  P  L   : E  L  I  T  G  N  V  S  T  Y  C  S  S  *  K  R  R  L  S  H  H  P  I  S  N  V  A  G  N  L  V  P  F  *  S  R  A  V  L  S  V  Q  P  A  S  S  F  R  K  L  Q  F  P  T  Y  C  F  *  E  T  V  R  *  D  *  L  L  H  T  S  S  K  A  T  F  I  Y  K  T  C  N  W  I  L  V  L  L  T  Y  R  L  V  S  S  :  Y  K  K  Q  T  Q </second_frame>
            <third_frame>   R  V  G  V  *  M  F  E  L  L  H  R  R  L  *  *  C  H  E  *   : G  C  L  F  W  S  S  F  G  S  L  H  E  K  T  S  F  L  S  R  S  R  W  V  H  *  R  R  E  R  P  I  P  F  C  K  S  S  I  C  I  *  F  S  T  K  V  D  H  V  G  *  S  R  R  A  K  G  N  H  *  :  N  *  *  L  E  T  *  A  H  I  A  V  L  E  R  E  G  *  A  I  I  R  Y  L  M  W  L  V  I  *  S  R  F  D  Q  E  Q  C  *  V  F  S  L  H  L  V  S  E  N  S  S  S  P  L  I  V  F  K  K  L  *  D  E  I  N  C  Y  T  Q  V  Q  K  L  L  S  F  T  K  H  A  T  G  S  L  C  F  *  R  I  V  W  F  R  H :   T  K  N  K  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0261A18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85025" stop="85087"/>
                    <exon start="86175" stop="86356"/>
                    <exon start="86837" stop="86909"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TELVSECLSCCTEDSDDAMSKVVYSGAVLEVCMRKLVFYPEVVGFIEEEKDQFPFVKVQYAFNSPPKLIMLDDHGEQKETIRIDNWKREHILQFLKEKVKPSSDI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="103258" PGL_stop="94161"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103258" e_stop="103180"/>
            <exon e_start="102414" e_stop="102321"/>
            <exon e_start="102228" e_stop="102119"/>
            <exon e_start="94750" e_stop="94161"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.726" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103258" e_stop="103180" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.726" acc_prob="0.991">
            <gDNA_intron_boundary i_start="103179" i_stop="102415" i_length="765"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102414" e_stop="102321" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.997">
            <gDNA_intron_boundary i_start="102320" i_stop="102229" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102228" e_stop="102119" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.993">
            <gDNA_intron_boundary i_start="102118" i_stop="94751" i_length="7368"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="94750" e_stop="94161" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103258" stop="103180"/>
              <exon start="102414" stop="102321"/>
              <exon start="102228" stop="102119"/>
              <exon start="94750" stop="94320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103258" stop="103180"/>
              <exon start="102414" stop="102321"/>
              <exon start="102228" stop="102119"/>
              <exon start="94750" stop="94487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103258" stop="103180"/>
              <exon start="102414" stop="102321"/>
              <exon start="102228" stop="102119"/>
              <exon start="94750" stop="94601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103258" stop="103180"/>
              <exon start="102414" stop="102321"/>
              <exon start="102228" stop="102119"/>
              <exon start="94750" stop="94700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103258" stop="103180"/>
              <exon start="102414" stop="102321"/>
              <exon start="102228" stop="102211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103254" stop="103180"/>
              <exon start="102414" stop="102321"/>
              <exon start="102228" stop="102119"/>
              <exon start="94750" stop="94423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103254" stop="103180"/>
              <exon start="102414" stop="102321"/>
              <exon start="102228" stop="102119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103243" stop="103180"/>
              <exon start="102414" stop="102321"/>
              <exon start="102228" stop="102119"/>
              <exon start="94750" stop="94351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103242" stop="103180"/>
              <exon start="102414" stop="102321"/>
              <exon start="102228" stop="102119"/>
              <exon start="94750" stop="94161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103239" stop="103180"/>
              <exon start="102414" stop="102321"/>
              <exon start="102228" stop="102119"/>
              <exon start="94750" stop="94336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103222" stop="103180"/>
              <exon start="102414" stop="102321"/>
              <exon start="102228" stop="102119"/>
              <exon start="94750" stop="94296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103222" stop="103180"/>
              <exon start="102414" stop="102321"/>
              <exon start="102228" stop="102119"/>
              <exon start="94750" stop="94429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94744" stop="94357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357811" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94713" stop="94470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540364" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTTGACCCATCGCTTCTCTTCATCGCTGTGTTGAAGTTTTGGTTTTTGAGTTTTGAGATTTGCTGTTCGAAGATG : GTGCGATTACAGCCAGACCCATTCCTCAATGAACTGACGAGTATGTTTGAGCGAACTACTGAGCATGGTTCCGTTTGGGTTACGCTTAAACACT : CTTCTGATAAATCTAAAGCCCAACGGAATAAGATGAAGACAGCTGGTGAAACTCTTGAATTTAAGTGCCTCATCCGAGCAACTGATGGGAAAAAGAATATTTCCACAATG : GTTGGAGCAAAAGATCACCAGCGTTTCCAAGCATCTTATGCAATTTTGCTGAAGGCCCGGTTGACTGCACTAAAGAAGAGGGAGAGGAAGGACAAGAGGAAGGCTACTGATTCTGACAAAAAGATGGATATTTCGAAAAAGAAATCTGCTGCTGCTAAAGCCTCTACATGAAACTTTAGTCCTTTGGTTTATTCCCCCATTTTGTTTCTAGGATAGAGTTGTAGGATTTGAACCCCATCCATTTGGGGCGACAAGTCTGAAACTTCATTACAACTCCACTGCATAGAATGAAGAAAGGAGGTGTTTTTACTCAATTTGATTATTCACATCTAAATTAGTCAAACTTTTTAAAGAGCTTGTTGGGTTATGGAACAGTTGAAGGAATTTTGTCATAATCTTGATCTTTTAATTCCTTGAACAACAGCTTTGGCAATTGAAAGTAGATGGGACCAAATTAAAAGTAGTATGCCTACATACTTGAATGTCATGTCAACTGCATATGTCCATACTTTTTGGTTGTGGGAACTTAAAATGACATTTTTTTGCTTCTTTTTGTTCAACCAGTTCTTTTTCCACTGTTCCAAAACCAT</gDNA_template>
            <first_frame> F  L  *  P  I  A  S  L  H  R  C  V  E  V  L  V  F  E  F  *  D  L  L  F  E  D   : G  A  I  T  A  R  P  I  P  Q  *  T  D  E  Y  V  *  A  N  Y  *  A  W  F  R  L  G  Y  A  *  T  L :   F  *  *  I  *  S  P  T  E  *  D  E  D  S  W  *  N  S  *  I  *  V  P  H  P  S  N  *  W  E  K  E  Y  F  H  N   : G  W  S  K  R  S  P  A  F  P  S  I  L  C  N  F  A  E  G  P  V  D  C  T  K  E  E  G  E  E  G  Q  E  E  G  Y  *  F  *  Q  K  D  G  Y  F  E  K  E  I  C  C  C  *  S  L  Y  M  K  L  *  S  F  G  L  F  P  H  F  V  S  R  I  E  L  *  D  L  N  P  I  H  L  G  R  Q  V  *  N  F  I  T  T  P  L  H  R  M  K  K  G  G  V  F  T  Q  F  D  Y  S  H  L  N  *  S  N  F  L  K  S  L  L  G  Y  G  T  V  E  G  I  L  S  *  S  *  S  F  N  S  L  N  N  S  F  G  N  *  K  *  M  G  P  N  *  K  *  Y  A  Y  I  L  E  C  H  V  N  C  I  C  P  Y  F  L  V  V  G  T  *  N  D  I  F  L  L  L  F  V  Q  P  V  L  F  P  L  F  Q  N  H </first_frame>
            <second_frame>  F  F  D  P  S  L  L  F  I  A  V  L  K  F  W  F  L  S  F  E  I  C  C  S  K  M  :  V  R  L  Q  P  D  P  F  L  N  E  L  T  S  M  F  E  R  T  T  E  H  G  S  V  W  V  T  L  K  H   : S  S  D  K  S  K  A  Q  R  N  K  M  K  T  A  G  E  T  L  E  F  K  C  L  I  R  A  T  D  G  K  K  N  I  S  T  M  :  V  G  A  K  D  H  Q  R  F  Q  A  S  Y  A  I  L  L  K  A  R  L  T  A  L  K  K  R  E  R  K  D  K  R  K  A  T  D  S  D  K  K  M  D  I  S  K  K  K  S  A  A  A  K  A  S  T  *  N  F  S  P  L  V  Y  S  P  I  L  F  L  G  *  S  C  R  I  *  T  P  S  I  W  G  D  K  S  E  T  S  L  Q  L  H  C  I  E  *  R  K  E  V  F  L  L  N  L  I  I  H  I  *  I  S  Q  T  F  *  R  A  C  W  V  M  E  Q  L  K  E  F  C  H  N  L  D  L  L  I  P  *  T  T  A  L  A  I  E  S  R  W  D  Q  I  K  S  S  M  P  T  Y  L  N  V  M  S  T  A  Y  V  H  T  F  W  L  W  E  L  K  M  T  F  F  C  F  F  L  F  N  Q  F  F  F  H  C  S  K  T   </second_frame>
            <third_frame>   S  L  T  H  R  F  S  S  S  L  C  *  S  F  G  F  *  V  L  R  F  A  V  R  R  W :   C  D  Y  S  Q  T  H  S  S  M  N  *  R  V  C  L  S  E  L  L  S  M  V  P  F  G  L  R  L  N  T  :  L  L  I  N  L  K  P  N  G  I  R  *  R  Q  L  V  K  L  L  N  L  S  A  S  S  E  Q  L  M  G  K  R  I  F  P  Q  W :   L  E  Q  K  I  T  S  V  S  K  H  L  M  Q  F  C  *  R  P  G  *  L  H  *  R  R  G  R  G  R  T  R  G  R  L  L  I  L  T  K  R  W  I  F  R  K  R  N  L  L  L  L  K  P  L  H  E  T  L  V  L  W  F  I  P  P  F  C  F  *  D  R  V  V  G  F  E  P  H  P  F  G  A  T  S  L  K  L  H  Y  N  S  T  A  *  N  E  E  R  R  C  F  Y  S  I  *  L  F  T  S  K  L  V  K  L  F  K  E  L  V  G  L  W  N  S  *  R  N  F  V  I  I  L  I  F  *  F  L  E  Q  Q  L  W  Q  L  K  V  D  G  T  K  L  K  V  V  C  L  H  T  *  M  S  C  Q  L  H  M  S  I  L  F  G  C  G  N  L  K  *  H  F  F  A  S  F  C  S  T  S  S  F  S  T  V  P  K  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0261A18.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103257" stop="103180"/>
                    <exon start="102414" stop="102321"/>
                    <exon start="102228" stop="102119"/>
                    <exon start="94750" stop="94580"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFDPSLLFIAVLKFWFLSFEICCSKMVRLQPDPFLNELTSMFERTTEHGSVWVTLKHSSDKSKAQRNKMKTAGETLEFKCLIRATDGKKNISTMVGAKDHQRFQASYAILLKARLTALKKRERKDKRKATDSDKKMDISKKKSAAAKAST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="94486" PGL_stop="99108"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94486" e_stop="94889"/>
            <exon e_start="95324" e_stop="95448"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.774" acc_prob="0.988" e_score="0.985"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="94486" e_stop="94889" e_length="404"/>
          </exon>
          <intron i_serial="1" don_prob="0.774" acc_prob="0.988">
            <gDNA_intron_boundary i_start="94890" i_stop="95323" i_length="434"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="95324" e_stop="95448" e_length="125"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94486" stop="94889"/>
              <exon start="95324" stop="95448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTTTCAGACTTGTCGCCCCAAATGGATGGGGTTCAAATCCTACAACTCTATCCTAGAAACAAAATGGGGGAATAAACCAAAGGACTAAAGTTTCATGTAGAGGCTTTAGCAGCAGCAGATTTCTTTTTCGAAATATCCATCTTTTTGTCAGAATCAGTAGCCTTCCTCTTGTCCTTCCTCTCCCTCTTCTTTAGTGCAGTCAACCGGGCCTTCAGCAAAATTGCATAAGATGCTTGGAAACGCTGGTGATCTTTTGCTCCAACCTGTTAGTTCAATATAATCAAGTGCATCATTAGAGCCACAAGAAGTGAAATGATGCATCAAAACATAAACAACAATTGTATAAACTACATAAGCAACAAGCAAAGACGTGAATACAAATAAGATGACACCACCCATAAG : GTGAGCGAAATTTAGAACAGAAGTGTGCAACATGCAAATGCTGAAAGGGCTAGCTAGCAGACATACCAGACAAAGTTCTATATTAAAGCGACATTTCACATTCTTGTAACATGACCAGATGTTTT</gDNA_template>
            <first_frame> K  F  Q  T  C  R  P  K  W  M  G  F  K  S  Y  N  S  I  L  E  T  K  W  G  N  K  P  K  D  *  S  F  M  *  R  L  *  Q  Q  Q  I  S  F  S  K  Y  P  S  F  C  Q  N  Q  *  P  S  S  C  P  S  S  P  S  S  L  V  Q  S  T  G  P  S  A  K  L  H  K  M  L  G  N  A  G  D  L  L  L  Q  P  V  S  S  I  *  S  S  A  S  L  E  P  Q  E  V  K  *  C  I  K  T  *  T  T  I  V  *  T  T  *  A  T  S  K  D  V  N  T  N  K  M  T  P  P  I  R :   *  A  K  F  R  T  E  V  C  N  M  Q  M  L  K  G  L  A  S  R  H  T  R  Q  S  S  I  L  K  R  H  F  T  F  L  *  H  D  Q  M  F  </first_frame>
            <second_frame>  S  F  R  L  V  A  P  N  G  W  G  S  N  P  T  T  L  S  *  K  Q  N  G  G  I  N  Q  R  T  K  V  S  C  R  G  F  S  S  S  R  F  L  F  R  N  I  H  L  F  V  R  I  S  S  L  P  L  V  L  P  L  P  L  L  *  C  S  Q  P  G  L  Q  Q  N  C  I  R  C  L  E  T  L  V  I  F  C  S  N  L  L  V  Q  Y  N  Q  V  H  H  *  S  H  K  K  *  N  D  A  S  K  H  K  Q  Q  L  Y  K  L  H  K  Q  Q  A  K  T  *  I  Q  I  R  *  H  H  P  *   : G  E  R  N  L  E  Q  K  C  A  T  C  K  C  *  K  G  *  L  A  D  I  P  D  K  V  L  Y  *  S  D  I  S  H  S  C  N  M  T  R  C  F </second_frame>
            <third_frame>   V  S  D  L  S  P  Q  M  D  G  V  Q  I  L  Q  L  Y  P  R  N  K  M  G  E  *  T  K  G  L  K  F  H  V  E  A  L  A  A  A  D  F  F  F  E  I  S  I  F  L  S  E  S  V  A  F  L  L  S  F  L  S  L  F  F  S  A  V  N  R  A  F  S  K  I  A  *  D  A  W  K  R  W  *  S  F  A  P  T  C  *  F  N  I  I  K  C  I  I  R  A  T  R  S  E  M  M  H  Q  N  I  N  N  N  C  I  N  Y  I  S  N  K  Q  R  R  E  Y  K  *  D  D  T  T  H  K  :  V  S  E  I  *  N  R  S  V  Q  H  A  N  A  E  R  A  S  *  Q  T  Y  Q  T  K  F  Y  I  K  A  T  F  H  I  L  V  T  *  P  D  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0261A18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="98632" e_stop="99108"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="98632" e_stop="99108" e_length="477"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98632" stop="99108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACGAACCGACACGTAGATATAGGGGATCAGAGTGTCACGTACCGACACAAGAGGAATAATGAATATGAGGGATCGGAGTGTCACGTACCGACACAAGAGAATTAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATAATTCCCAAATGAGTATGGTGTTGAGGCTTGAGCCCTCATGGATGAACTTGATGGTACTTATTGATGATTATAATACTTGTTGTGGCTACATGTTGAGTTTTATAGTTGATTTACGATAATATTGATATATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> H  E  P  T  R  R  Y  R  G  S  E  C  H  V  P  T  Q  E  E  *  *  I  *  G  I  G  V  S  R  T  D  T  R  E  L  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  P  S  W  M  N  L  M  V  L  I  D  D  Y  N  T  C  C  G  Y  M  L  S  F  I  V  D  L  R  *  Y  *  Y  I  L  F  P  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  C  S  K  R  A  I  V  F  N  S  T  V  I  Q  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  T </first_frame>
            <second_frame>  T  N  R  H  V  D  I  G  D  Q  S  V  T  Y  R  H  K  R  N  N  E  Y  E  G  S  E  C  H  V  P  T  Q  E  N  *  R  *  *  I  L  K  D  V  N  I  L  N  L  T  N  I  I  P  K  *  V  W  C  *  G  L  S  P  H  G  *  T  *  W  Y  L  L  M  I  I  I  L  V  V  A  T  C  *  V  L  *  L  I  Y  D  N  I  D  I  Y  C  S  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G   </second_frame>
            <third_frame>   R  T  D  T  *  I  *  G  I  R  V  S  R  T  D  T  R  G  I  M  N  M  R  D  R  S  V  T  Y  R  H  K  R  I  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  R  T  *  F  P  N  E  Y  G  V  E  A  *  A  L  M  D  E  L  D  G  T  Y  *  *  L  *  Y  L  L  W  L  H  V  E  F  Y  S  *  F  T  I  I  L  I  Y  T  V  P  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  I  C  G  V  Q  Q  T  C  H  R  L  Q  L  N  S  N  S  S  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0261A18.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98911" stop="99108"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YILFPILSWPMISTQYPCFVLTPTFMFSSCLFVECSKRAIVFNSTVIQASLTTSEIQGELMLLAWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="95188" e_stop="95371"/>
            <exon e_start="95803" e_stop="96195"/>
            <exon e_start="99018" e_stop="99045"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.803" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.965" e_score="0.987"/>
          <exon-only e_score="0.893"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95188" e_stop="95371" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.803" acc_prob="0.000">
            <gDNA_intron_boundary i_start="95372" i_stop="95802" i_length="431"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="95803" e_stop="96195" e_length="393"/>
          </exon>
          <intron i_serial="2" don_prob="0.907" acc_prob="0.965">
            <gDNA_intron_boundary i_start="96196" i_stop="99017" i_length="2822"/>
          </intron>
          <exon e_serial="3" e_score="0.893">
            <gDNA_exon_boundary e_start="99018" e_stop="99045" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95188" stop="95371"/>
              <exon start="95803" stop="96195"/>
              <exon start="99018" stop="99045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTAAAGGGACGTTCACATTCTTAGACACATGACGGGCTGTATCAGCCCATACTTCATGAAATATGTACCATGTGAAAACCTTGTAAATTTCTAAATTTCAAGAAGTAACAAATCAACCAGTATTTGCATGTGCAGGTGAGCGAAATTTAGAACAGAAGTGTGCAACATGCAAATGCTGAAAGG : GCTAGCTAACAGACATACCAGACAAAGTTCTATATTAAAGGGAAGTTCACATTCTTAAAGACACGTGATGGGCCGTGTCAGCCCAAACTTCATGCCATGTGTACCATGTAGAAAACCTTGTCAATTTCTCAATTTCAAGAAGTAACAAATCAAAGGAGTATATGGATGTGCAGGTGAGCTATATTCAGAACAAGTGTGCAACTCGCAAATACTGAAAGGGCTAGCTAGCGGACATACCCAACCAAAGTTCTATATTAAAGCGGCTCTCACATTCTTAGATACATGACGGGCTGTTTCAGCCCAAACTCCATGCCGTGTGTTGTACCATGTGGAAAACCTTGTCAATTTCCCAATTTTAAGAAGTAACAAATCAAAGAGTATTTGCATGTGCAG : CAAACGTGCCATCGTCTTCAACTCAACA</gDNA_template>
            <first_frame> T  K  G  T  F  T  F  L  D  T  *  R  A  V  S  A  H  T  S  *  N  M  Y  H  V  K  T  L  *  I  S  K  F  Q  E  V  T  N  Q  P  V  F  A  C  A  G  E  R  N  L  E  Q  K  C  A  T  C  K  C  *  K   : G  *  L  T  D  I  P  D  K  V  L  Y  *  R  E  V  H  I  L  K  D  T  *  W  A  V  S  A  Q  T  S  C  H  V  Y  H  V  E  N  L  V  N  F  S  I  S  R  S  N  K  S  K  E  Y  M  D  V  Q  V  S  Y  I  Q  N  K  C  A  T  R  K  Y  *  K  G  *  L  A  D  I  P  N  Q  S  S  I  L  K  R  L  S  H  S  *  I  H  D  G  L  F  Q  P  K  L  H  A  V  C  C  T  M  W  K  T  L  S  I  S  Q  F  *  E  V  T  N  Q  R  V  F  A  C  A   : A  N  V  P  S  S  S  T  Q   </first_frame>
            <second_frame>  L  K  G  R  S  H  S  *  T  H  D  G  L  Y  Q  P  I  L  H  E  I  C  T  M  *  K  P  C  K  F  L  N  F  K  K  *  Q  I  N  Q  Y  L  H  V  Q  V  S  E  I  *  N  R  S  V  Q  H  A  N  A  E  R  :  A  S  *  Q  T  Y  Q  T  K  F  Y  I  K  G  K  F  T  F  L  K  T  R  D  G  P  C  Q  P  K  L  H  A  M  C  T  M  *  K  T  L  S  I  S  Q  F  Q  E  V  T  N  Q  R  S  I  W  M  C  R  *  A  I  F  R  T  S  V  Q  L  A  N  T  E  R  A  S  *  R  T  Y  P  T  K  V  L  Y  *  S  G  S  H  I  L  R  Y  M  T  G  C  F  S  P  N  S  M  P  C  V  V  P  C  G  K  P  C  Q  F  P  N  F  K  K  *  Q  I  K  E  Y  L  H  V  Q  :  Q  T  C  H  R  L  Q  L  N  </second_frame>
            <third_frame>   *  R  D  V  H  I  L  R  H  M  T  G  C  I  S  P  Y  F  M  K  Y  V  P  C  E  N  L  V  N  F  *  I  S  R  S  N  K  S  T  S  I  C  M  C  R  *  A  K  F  R  T  E  V  C  N  M  Q  M  L  K  G :   L  A  N  R  H  T  R  Q  S  S  I  L  K  G  S  S  H  S  *  R  H  V  M  G  R  V  S  P  N  F  M  P  C  V  P  C  R  K  P  C  Q  F  L  N  F  K  K  *  Q  I  K  G  V  Y  G  C  A  G  E  L  Y  S  E  Q  V  C  N  S  Q  I  L  K  G  L  A  S  G  H  T  Q  P  K  F  Y  I  K  A  A  L  T  F  L  D  T  *  R  A  V  S  A  Q  T  P  C  R  V  L  Y  H  V  E  N  L  V  N  F  P  I  L  R  S  N  K  S  K  S  I  C  M  C  S :   K  R  A  I  V  F  N  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0261A18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 283 chains have been computed
$ 
$ memory statistics:
$ 147520 bytes spliced alignments in total
$ 56 spliced alignments have been stored
$ 2634 bytes was the average size of a spliced alignment
$ 16560 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1840 bytes was the average size of a predicted gene location
$ 5 megabytes was the average size of the backtrace matrix
$ 334 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 08:52:37
-->
