<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 17:55:54"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0271L05-yomTS/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346766" ref_strand="+" ref_description="SGN-U346766        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|48057665|gb|AAT39964.1| putative gag polyprotein [Solanum demissum] (evalue: 1e-36, score=156)">
      <seq>tatgataagtaatccactctttgtgtcaactgccccgactaacaacatcctgtagacaatgatggtgcccaaatccaacagcgatcctctgcccaaagttcggcttgatcacagttacactcttgaagaggccattaaaattccaagctctcatcccaacattcatcaatatggttaccctgtcaaaattgagaagatggtcaagaatgaggaacatgaagaaatgactaagaaaatgaagagttctgaacagagtataagagatatgaaaggaccaagaggccacaaaggcatctcgttcagtgacttgtgtatgtttccctcacgtccatttgcctgctggttttaaaattccaaagtttgaaaaatacgatggtcacggagacctcatagctcatctaaagatatattgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0271L05.1" temp_strand="+" temp_description="C06HBa0271L05.1  AC211068.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0271L05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9570" stop="10580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9866" g_stop="10280" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0271L05.1" gen_strand="+" ref_id="SGN-U346766" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0271L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9866" e_stop="10280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATAAGTAATCCACTCTTTGTGTCAACTGCCCCGACTAACAGCATCCCGCAGCCAACGATGGTGCCCAAATCCAACAGTGATCCTCCGCCCAAAGTTCGGCGTGAGCAGAGTTACACTCTTGAAGAGACCATTAAAATTCCAAGTTCTCATCCCCACATTAATCAATATAGTTCCCCTGTTGAAATTGAGAGGATGGTTAAGAATGAGGAACATGAAGAAATGACTAAGAAAATGAAGAGTTTGGAACAGAGTATAAGAGATATGCAAGGACTAGGAGGCCACAAAGGCATCTCATTCAGTGACTTGTGTATGTTT-CCTCACGTCCATTTACCTGCTGGTTTTAAAACTCCAAAGTTTGAAAAATATGATGGTCACGGAGACCCCATAGCTCATCTAAAGAGATATTGCAAC</genome_strand>
        <mrna_strand>TATGATAAGTAATCCACTCTTTGTGTCAACTGCCCCGACTAACAACATCCTGTAGACAATGATGGTGCCCAAATCCAACAGCGATCCTCTGCCCAAAGTTCGGCTTGATCACAGTTACACTCTTGAAGAGGCCATTAAAATTCCAAGCTCTCATCCCAACATTCATCAATATGGTTACCCTGTCAAAATTGAGAAGATGGTCAAGAATGAGGAACATGAAGAAATGACTAAGAAAATGAAGAGTTCTGAACAGAGTATAAGAGATATGAAAGGACCAAGAGGCCACAAAGGCATCTCGTTCAGTGACTTGTGTATGTTTCCCTCACGTCCATTTGCCTGCTGGTTTTAAAATTCCAAAGTTTGAAAAATACGATGGTCACGGAGACCTCATAGCTCATCTAAAGATATATTGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342831" ref_strand="+" ref_description="SGN-U342831        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|48057665|gb|AAT39964.1| putative gag polyprotein [Solanum demissum] (evalue: 1e-50, score=160)">
      <seq>ggaaaaatttcatgaatatgctatcagatggagggaacaagctgctaggtttaaaccaccgatgaaggagtcagagatgattgacgtttttctccaggcgcaagaacctgattactttctctatctgctttctgccgtagggaagacattcgctgaagttattaaggtaggggaaatggtggaaaatggtatcaagtctggaaagattgtaagtcaggctgccttaaaatccacaacacaagtgcttcaaaatggttctggaaatattgagggaagaagagaagggaggatgtggccactattgtatcagcgcctaggactcatgttctaggtaattccccacaacactattttccttcccaagctccacaatattctatgccatacactccatatcatggttttaatgcacaaccaattgcacccccttcttatccaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0271L05.1" temp_strand="+" temp_description="C06HBa0271L05.1  AC211068.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0271L05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10193" stop="11236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10493" g_stop="10936" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0271L05.1" gen_strand="+" ref_id="SGN-U342831" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0271L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10493" e_stop="10936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATTTTCGTGAATATGCTATCAGATGGAGGGAACAAGCTGCTAGGGTTAAACCACCGATGAAGGAGTCAGAGATGATTGATGTTTTTCTCCAGGCGCAAGAACCTGATTACTTTCACTATCTGCTTTCTGCCGTAGGGAAAACATTCGCTGAAGTTATTAAGGTGGGGGAAATGGTGGAAAATGGCATCAAGTCTGGAAAGATTGTAAGTCAGGCTGCCCTAAAAGCCACAACACAAGTGCTTCAAAATGGTTCTGGAAATATTGGAGGGAAGAAGAGAAGGGAGGATGTGGCCACTATTGTATCAGCGCCTAGGACTCATGTTCTAGGTAATTCCCCACAACACTATTTTCCTTCCCAAGCTCCACAATATTCTATGCCATACACTCCATATCATGTTTTTAATGCACAACCAATTGCACCCCCTTCTTATCCACAATG</genome_strand>
        <mrna_strand>GGAAAAATTTCATGAATATGCTATCAGATGGAGGGAACAAGCTGCTAGGTTTAAACCACCGATGAAGGAGTCAGAGATGATTGACGTTTTTCTCCAGGCGCAAGAACCTGATTACTTTCTCTATCTGCTTTCTGCCGTAGGGAAGACATTCGCTGAAGTTATTAAGGTAGGGGAAATGGTGGAAAATGGTATCAAGTCTGGAAAGATTGTAAGTCAGGCTGCCTTAAAATCCACAACACAAGTGCTTCAAAATGGTTCTGGAAATATT-GAGGGAAGAAGAGAAGGGAGGATGTGGCCACTATTGTATCAGCGCCTAGGACTCATGTTCTAGGTAATTCCCCACAACACTATTTTCCTTCCCAAGCTCCACAATATTCTATGCCATACACTCCATATCATGGTTTTAATGCACAACCAATTGCACCCCCTTCTTATCCACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344186" ref_strand="+" ref_description="SGN-U344186        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: putative(evalue: 9e-28, score=127)">
      <seq>tttgatgtactctggctggaattctgagtagtaccagggacctcatcacatttttcaacctcatcagcctcttcaggtagactatgattttgatcatcacagtcatttttcagttgttgttctgcatcatcttcacttccttcaattttctgcgaattgaataatttgatcacataatcttcatcatttgatccattatttttcaagcttgcatcttcatcaaatacaacatgaatgctttcttcaatgcattgagttcggacgctgaatattttgtaagccttactcgatgaagaatatccaacaaatactccttcatcactcctaagatcaaattttccagatcatccttgccattggtcagcacaaaacacctgcatgcaaattctctaagatagctgagcataggctttctgttgttgatcaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0271L05.1" temp_strand="-" temp_description="C06HBa0271L05.1  AC211068.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0271L05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25763" stop="24732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25463" g_stop="25032" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0271L05.1" gen_strand="-" ref_id="SGN-U344186" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0271L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25463" e_stop="25032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAGTACTCTGACTGGAATTCAGAGTAGTACCATGTACCTCATCACACTTTTCCACTTCATCAGCCTCTTCAGGTAGACTATGATTTTGATCATCAAAGTCATTTTTCAATTGTTGTTCTGCGTCAGCTTCACTTCCTTCAATTTTCTGTGATTTGAACAGTTTGATCACATCATCTTCATCATTTGATCCAGTATTTTTCAAGCTTCCATCTTCATCAAATACAACATTAGTGGTTTTTTCAATGCATTGAGTTCTTTTGTTGAATATTCTGTAAGCCTTACTCGATGAAGAATATCCAACAAACACTCCTTCATCACTCCTAGGATCAAATTTTCCCAGATTATCCTTTCCATTGTTTAGCACAAAACACCTGCATCCAAATGCTCTAAGATAGCTCCGCATAGGCTTTCTGTTGTTGAGCAGCTCA</genome_strand>
        <mrna_strand>TTTGATGTACTCTGGCTGGAATTCTGAGTAGTACCAGGGACCTCATCACATTTTTCAACCTCATCAGCCTCTTCAGGTAGACTATGATTTTGATCATCACAGTCATTTTTCAGTTGTTGTTCTGCATCATCTTCACTTCCTTCAATTTTCTGCGAATTGAATAATTTGATCACATAATCTTCATCATTTGATCCATTATTTTTCAAGCTTGCATCTTCATCAAATACAACATGAATGCTTTCTTCAATGCATTGAGTTCGGACGCTGAATATTTTGTAAGCCTTACTCGATGAAGAATATCCAACAAATACTCCTTCATCACTCCTAAGATCAAATTTT-CCAGATCATCCTTGCCATTGGTCAGCACAAAACACCTGCATGCAAATTCTCTAAGATAGCTGAGCATAGGCTTTCTGTTGTTGATCAACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320365" ref_strand="+" ref_description="SGN-U320365        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>agtcaatgttttggcctttatttcacggtgttgttcctagttaagcagtatggtagtggccttcattttgtttcactttgtttcatgctacttggagttgatgaatcttgtcatttacattcagcctggatgtgagttgttttgtttgtaaccttccaatgagaaaacatattcttgccttccttgaatatactgcttttcgtgaattaatcgaaatgaagactttgcccctatgcaagcagaatgtgggttttgttctcctctgttttatttgcctaatttaagtttgccattgttcagttagacattcagcattttaagggtttaggatagtttagcttgccatgattgccgctgtgtttgtttttggacatgagggttcataagtgcacatccatattgctgttaatgcattgctgttttgcttttctttttatgagattttgtaagctcctcgcttagctcatacggttttttttttttcttttgaaatcgttgttccagtttaattcaaatcctcaaatgggtgtacttttattttttttatttctctgttttgctcaagattcgtttggttattttatcacttcatgtgctaatctattctctttttattgcatgtaaaactattctcgagtcctcatggacctcactcaaattccttgcaccttctcgttgagccataaagtctcaaaacacctttctcgagtcagtcaaccgccttaaaggatgtacaggtcggaaaaaaaaaactcagcagaaactgcttgaaaaaattgttgcagggatttgaagaagatgtatacagcagtatacatattttatacacaattatatgctgatatacaggttgaaggcgtacaggcggatccaaattcgaaatctgggtttttagcagtgaacatatgctgctaaaagggaactttcaactttcaaaagttgaaaaacaggatgatatacagcctgtatacactgatatacagaaatgttataccttaaataggtgtaaaaaatatgaatggcagcaggcgtgtaaaaattcgaactccatgaagatcgaaggagcttgaggaaggcgtactagaagattttttatttatttattaagttgtatttactttgggcataagccctaggcatttttgatttccttgtattcattcttgtatgtttaaacggggacaggtacgaaagaaagaaatgggttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0271L05.1" temp_strand="-" temp_description="C06HBa0271L05.1  AC211068.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0271L05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38987" stop="37179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38687" g_stop="37470" g_length="1218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1221" r_length="1221" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0271L05.1" gen_strand="-" ref_id="SGN-U320365" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>1218</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0271L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38687" e_stop="37470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCAATGTTTTGGCCTTAATTTCACAGTGTTGTTCGTAGTTAAGCAGTATGGTAGTGGCCTTCGTTTTGTTTCACTTTGTTTCATGCTACTTGGAGTTGATGAATCTTGTCATTTACATTCAGCCTGGATGTGAGTTGTTTTGTTTGTAATCTT-CAATGAGAAAACATATTCTTGCCTTCCTTGAATATACTGTTTTTCGTGAATTAATCGAAATGAAGACTTTGCCCCTATGCAAGCAGAATGTGGGTTTTGTTCTCCTCTGTTTTATTTGCGTAATTTAAGTTTGCCATTGTTCATTTAGACATTCAGCATTTTAAGGGTTTAGGATAGTTTAGCTTGCCATGATTGCCGCTGTGTTTATTTTTGGACATGAGGGTTCATAAGTGCACATCCATATTGCTGTTAATGCA-TGCTGTTTTGCTTTTCTTTTTTATGAGATTTTGTAAGCTCCTCGCTTAGCTCATAC-G-AGTTTTTTTTTCTTTTGAAATCGCTGTTCCAATTTAATTCAAATCCTCAAATGGGTGTACTTTTCTTTTTTTTATTTCTCTGTTTTGCTCAAGATTCGTTTGATTATTTTATCGCTTCATGTGCTAATCTATTCTCTTTTTATTGCATGTAAAACTATTCTCGAGTCCTCATGGACCTCACTCCAATTCCTTGCACCTTCTCGTTGAGCCATAAAGGCTCAAAACACCTTTCTCGAGTCAGCCAACCTCCTGAAAGTATGTACAGGTCGGAGAAAAAAAAACCCAGCAGAAACTGCTTGAAAAAATTGTTGCAGAGATTTGAAGAAGATGTATACAGCAGTATACATATTTTATACA-TTGTATACACTGATATACAGGTTGAAGGCGTACAAGCAGATCCAAATTCGAAATCTGGGATTGTAGCAGTGAACATATGCTTTTAAAAGGGAACTTTCAACTTTTGAAAGTTGAAAAACAAGCTGATATACAGCCTGTATACACTGATATACAGAAACATTATACCTTAAATAGGTGTAAAAAAATATGAATGGCAGCAGGCGTGCGAAAATTCGAACTCCATGAAGATCGAAGGAGCTTGAGGAAGGCGTACTAGAAGA-TTTTTATTTATTTATTAAGTTGTATTTACTTTGGGCATAAGCCCTTGTCATTTTTGCTTTCCTTGTATTCATTCTTGTATGTTTAGACTAGGACAGGTACGAAAGAAAGAAATGGGTTAAAAACCCAAAAGC</genome_strand>
        <mrna_strand>AGTCAATGTTTTGGCCTTTATTTCACGGTGTTGTTCCTAGTTAAGCAGTATGGTAGTGGCCTTCATTTTGTTTCACTTTGTTTCATGCTACTTGGAGTTGATGAATCTTGTCATTTACATTCAGCCTGGATGTGAGTTGTTTTGTTTGTAACCTTCCAATGAGAAAACATATTCTTGCCTTCCTTGAATATACTGCTTTTCGTGAATTAATCGAAATGAAGACTTTGCCCCTATGCAAGCAGAATGTGGGTTTTGTTCTCCTCTGTTTTATTTGCCTAATTTAAGTTTGCCATTGTTCAGTTAGACATTCAGCATTTTAAGGGTTTAGGATAGTTTAGCTTGCCATGATTGCCGCTGTGTTTGTTTTTGGACATGAGGGTTCATAAGTGCACATCCATATTGCTGTTAATGCATTGCTGTTTTGCTTTTC-TTTTTATGAGATTTTGTAAGCTCCTCGCTTAGCTCATACGGTTTTTTTTTTTTCTTTTGAAATCGTTGTTCCAGTTTAATTCAAATCCTCAAATGGGTGTACTTTTATTTTTTTTATTTCTCTGTTTTGCTCAAGATTCGTTTGGTTATTTTATCACTTCATGTGCTAATCTATTCTCTTTTTATTGCATGTAAAACTATTCTCGAGTCCTCATGGACCTCACTCAAATTCCTTGCACCTTCTCGTTGAGCCATAAAGTCTCAAAACACCTTTCTCGAGTCAGTCAACCGCCTTAAAGGATGTACAGGTCGGA-AAAAAAAAACTCAGCAGAAACTGCTTGAAAAAATTGTTGCAGGGATTTGAAGAAGATGTATACAGCAGTATACATATTTTATACACAATTATATGCTGATATACAGGTTGAAGGCGTACAGGCGGATCCAAATTCGAAATCTGGGTTTTTAGCAGTGAACATATGCTGCTAAAAGGGAACTTTCAACTTTCAAAAGTTGAAAAACAGGATGATATACAGCCTGTATACACTGATATACAGAAATGTTATACCTTAAATAGGTGT-AAAAAATATGAATGGCAGCAGGCGTGTAAAAATTCGAACTCCATGAAGATCGAAGGAGCTTGAGGAAGGCGTACTAGAAGATTTTTTATTTATTTATTAAGTTGTATTTACTTTGGGCATAAGCCCTAGGCATTTTTGATTTCCTTGTATTCATTCTTGTATGTTTAAACGGGGACAGGTACGAAAGAAAGAAATGGGTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334737" ref_strand="+" ref_description="SGN-U334737        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0271L05.1" temp_strand="+" temp_description="C06HBa0271L05.1  AC211068.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0271L05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63608" stop="64942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63908" g_stop="64642" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0271L05.1" gen_strand="+" ref_id="SGN-U334737" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.027" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0271L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63908" e_stop="64642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGGTCTTCGTTCTAAAACACTTCAACTCTTGAAATCTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCATAGACACGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAAACTTTCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACCTTCACAAGCACGATGAACCGTCACAAGCACGACAGACCGTCACAAGCTCCGAAGGTGGTCTCTTCTGCATTTCTTTGCTTAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAATGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAAGTTAAATTCGTTGTTTTTCCTCAAGCAACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGTAATCATTTGGCTATCAATCCCGATTAATCTAATCAAATCTAAGCATGCTATCACTATTAGGCTTGAATTTTGTGGGATCAGAACATGATACAGACTCACCACGCACTAACACTTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTGGTATTGCAACTAGTGTCCTCACTTTAAAACAAAATCCTCCTTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCT------T-C-CACC-T-------ACG--G-ACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331257" ref_strand="+" ref_description="SGN-U331257        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>ccgccagcccctctccctctctctctccggcgacccctcttctttttcccccggccagccagcagctgctggccgccttgttcccttctctttccctttatctcattctcgcttctctcttccttcctctttccccctctccctcttcttctctattcctcttcccgttctctccctctctactcgcccttctctccagccggcgaaacaagcaggaaggcgacgacaaccagcagctccggtcaggcgagtacaccggcaacagccaggcgccgccgtctccttctccctctttccctcttcttctcctccgtcttttttcctctcccttttggaggacttccaggcagcagcgaccagtgcacctctagcaatggtgcagtttctccagcagcagcagcgagaacaaaaccaccaggcagcaaagatgcagcaaccagtggacacagcagccgacaatgctgttccgaccggcaaagtcagcagcagctgcaccaaccagcgcagctccgccccaaccttcagcaataacaacaaccgatatataaaaacgaggcattaggataaggacagatctttatagatctgtcccaagtatgaatttttgttctctagtcttaaatccttattgtatgagttatttttcctcaaaatctcatcttcttctccagccttaattcatgtgaaattcttaacgcttattttatcatatgattagtttgttagaattatgtgtcctttccttgctctcctttgtttcttttgaaaatgaagcacccatggtatttctctgtctcggaatatatttgttcatactcaatgtgtaattgactgtatacgactgtgtctaaccatatatggctgggatatattaatttatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0271L05.1" temp_strand="-" temp_description="C06HBa0271L05.1  AC211068.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0271L05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76061" stop="74578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75761" g_stop="74878" g_length="884"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="884" r_length="884" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0271L05.1" gen_strand="-" ref_id="SGN-U331257" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0271L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75761" e_stop="74878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCAGCCCCTCTCCCTCTCTCTCTCCGGCGACCCCTCTTCTTTTTCCCCCGGCCAGCCAGCAGCTGCTGGCCGCCTTGTTCCCTTCTCTTTCCCTTTATCTCATTCTCGCTTCTCTCTTCCTTCCTCTTTCCCCCTCTCCCTCTTCTTCTCTATTCCTCTTCCCGTTCTCTCCCTCTCTACTCGCCCTTCTCTCCAGCCGGCGAAACAAGCAGGAAGGCGACGACAACCAGCAGCTCCGGTCAGGCGAGTACACCGGCAACAGCCAGGCGCCGCCGTCTCCTTCTCCCTCTTTCCCTCTTCTTCTCCTCCGTCTTTTTTCCTCTCCCTTTTGGAGGACTTCCAGGCAGCAGCGACCAGTGCACCTCTAGCAATGGTGCAGTTTCTCCAGCAGCAGCAGCGAGAACAAAACCACCAGGCAGCAAAGATGCAGCAACCAGTGGACACAGCAGCCGACAATGCTGTTCCGACCGGCAAAGTCAGCAGCAGCTGCACCAACCAGCGCAGCTCCGCCCCAACCTTCAGCAATAACAACAACCGATATATAAAAACGAGGCATTAGGATAAGGACAGATCTTTATAGATCTGTCCCAAGTATGAATTTTTGTTCTCTAGTCTTAAATCCTTATTGTATGAGTTATTTTTCCTCAAAATCTCATCTTCTTCTCCAGCCTTAATTCATGTGAAATTCTTAACGCTTATTTTATCATATGATTAGTTTGTTAGAATTATGTGTCCTTTCCTTGCTCTCCTTTGTTTCTTTTGAAAATGAAGCACCCATGGTATTTCTCTGTCTCGGAATATATTTGTTCATACTCAATGTGTAATTGACTGTATACGACTGTGTCTAACCATATATGGCTGGTATATATTAATTTATTTGT</genome_strand>
        <mrna_strand>CCGCCAGCCCCTCTCCCTCTCTCTCTCCGGCGACCCCTCTTCTTTTTCCCCCGGCCAGCCAGCAGCTGCTGGCCGCCTTGTTCCCTTCTCTTTCCCTTTATCTCATTCTCGCTTCTCTCTTCCTTCCTCTTTCCCCCTCTCCCTCTTCTTCTCTATTCCTCTTCCCGTTCTCTCCCTCTCTACTCGCCCTTCTCTCCAGCCGGCGAAACAAGCAGGAAGGCGACGACAACCAGCAGCTCCGGTCAGGCGAGTACACCGGCAACAGCCAGGCGCCGCCGTCTCCTTCTCCCTCTTTCCCTCTTCTTCTCCTCCGTCTTTTTTCCTCTCCCTTTTGGAGGACTTCCAGGCAGCAGCGACCAGTGCACCTCTAGCAATGGTGCAGTTTCTCCAGCAGCAGCAGCGAGAACAAAACCACCAGGCAGCAAAGATGCAGCAACCAGTGGACACAGCAGCCGACAATGCTGTTCCGACCGGCAAAGTCAGCAGCAGCTGCACCAACCAGCGCAGCTCCGCCCCAACCTTCAGCAATAACAACAACCGATATATAAAAACGAGGCATTAGGATAAGGACAGATCTTTATAGATCTGTCCCAAGTATGAATTTTTGTTCTCTAGTCTTAAATCCTTATTGTATGAGTTATTTTTCCTCAAAATCTCATCTTCTTCTCCAGCCTTAATTCATGTGAAATTCTTAACGCTTATTTTATCATATGATTAGTTTGTTAGAATTATGTGTCCTTTCCTTGCTCTCCTTTGTTTCTTTTGAAAATGAAGCACCCATGGTATTTCTCTGTCTCGGAATATATTTGTTCATACTCAATGTGTAATTGACTGTATACGACTGTGTCTAACCATATATGGCTGGGATATATTAATTTATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313156" ref_strand="+" ref_description="SGN-U313156        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: | Symbol: None | DEAD box RNA helicase (PRH75), nearly identical to RNA helicase (Arabidopsis thaliana) GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain | chr5:24997494-25001199 REVERSE | Aliases: MMI9.2, MMI9_2(evalue: 1e-74, score=276) genbank/nr: gi|7211427|gb|AAF40306.1| RNA helicase [Vigna radiata](evalue: 9e-79, score=296)">
      <seq>tgcttctgcgcctaactgcagaatacaccgttttcggcaggagagcaattccccctacaaacaaagtcatcatgcctgcacttgttgtaactgaagaaacaatggcctccgagctatccaagaaaaaaatgaagaagacacccaaaactgatattgaaactcctactgataagaaaaccaaagagaaaaagtcaaaaaaatccaagattgagtctgggtctgattcagaggacgctaaaaggagtaaaaagaaagagaaaaagagaaaagctttggacttggatggtgagaagagtgatacgagctcagagatatgcgagcccgtagatttgaagaagaataaaaaggctaaattcgacgacgaacaagtgatggttgagaagaaagtcgaggatcctaatgctttgtctaattttaggatttcaaagcctttaaaagaggctttgaattctaagggaatagaagcactttttcctattcaagctatgacttttgatgatattcttgatggatgtgatttggttggtcgagctcgtactgggcagggtaaaacgctggcctttgttttacccatattggagtccctaacgaatggtcctactaaagcattacgaaaaacagggtatgggaaggctcctagtgttctggtgcttttacctactagggaattggcacttcaggtgtttgctgactttgaagtctatggccgggctgttgggctcacttcatgctgtttgtatggaaattctcctatgggggcacaacaggctcaactaaaaagaggagttgacattgtagtgggtactcctggaagggttaaggaccacattgaaaggggaaatattgatttcgggtctttgaagttccgtgttcttgatgaagtcgatgaaatgttaaaaattggttttgtagatgatgtcgaatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0271L05.1" temp_strand="+" temp_description="C06HBa0271L05.1  AC211068.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0271L05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96783" stop="99801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97083" g_stop="97627" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97628" i_stop="98941" i_length="1314">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98942" g_stop="99076" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="680" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99077" i_stop="99173" i_length="97">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99174" g_stop="99314" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="821" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99315" i_stop="99394" i_length="80">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99395" g_stop="99501" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="822" r_stop="928" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0271L05.1" gen_strand="+" ref_id="SGN-U313156" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>928</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0271L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97083" e_stop="97627"/>
          <exon e_start="98942" e_stop="99076"/>
          <exon e_start="99174" e_stop="99314"/>
          <exon e_start="99395" e_stop="99501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCTGCGCCTAACTGCAGAATACACCGTTTTCGGCAGGAGAGCAATTCCCCCTACAAACAAAGTCATCATGCCTGCACTTGTTGTAACTGAAGAAACAATGGCCTCCGAGCTATCCAAGAAAAAAATGAAGAAGACACCCAAAACTGATATTGAAACTCCTACTGATAAGAAAACCAAAGAGAAAAAGTCAAAAAAATCCAAGATTGAGTCTGGGTCTGATTCAGAGGACGCTAAAAGGAGTAAAAAGAAAGAGAAAAAGAGAAAAGCTTTGGACTTGGATGGTGAGAAGAGTGATACGAGCTCAGAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGATGTGATTTGGTTGGTCGAGCTCGTACTGGGCAGGTAGCTCTTGATTCTATCATGCATATTTATCATTTACTTGCCGTGCTCTAATTATGTAAATATTGGGTGAGTTTGAATGGAGTAACCTGACTTAACACTTTGTTTGGTTAATTATTACAAATTGTTTCATAATGGATTGCATTATATTGTATTGTAATGTATGGATCCATTATACTGGATACACATATATGATGTTCATTAGAGGAAGAGACATAGAGACTCTAACTTGTTTGTAAGGTTCTTTGTTCTCTTGCTGTTAGAGATGCACAGGTTTCCTTTGATGAGAAACTTACTTTTGGATTGTGATAAAGGTTCTTTAATTTCTTTATTGTCATATATACAGATTACCCTTTTGAAGAAAAGTTTATATATAAATTATCAGCTGTCATATATACAAATTACCCTTTTGAAGAAAAAGTTTATATATGAATTATGAGCTGCATGTTTCCTATTATAAATTATTCATTCATCAAGAATTTAAGCTAAATGGGAAGGGTGAAATCAGTGTTACAAAAGGCCTTCGCCGAGAGGCAAGGCGAGACGATGGGTCCTCGCCATTCTCTACTGAGGTGAGGCGAGATCAGTATGGCGAGGTGTGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGCCGCCTTTTTAATTAAAAATATTTGACTTAACAATATTAGTCAAAATTAGGTTTTTTTTTATACTTTTGAAATTTCTGCTTTCTCCATCGCTACTCTCTCTCTCGATTGACTCTCTTCTCGGCTTCTCCATCGCTGTCTCTTCTCCCTCGCTCTCTTCTCCAGTTCTCTTCTCGGCTTCTCCATTGTTGTCGGCTTCTCCATCGCTGAATATTTGCTAATATGTGTTATTGCTATTAAGATTTTGGATAAAATATGCAATTAAATATTTTAAATTTTTGGTATTAATTGGCGCCTTTATTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTTGCCGCGTGGCGAGGCAGGCCCTTGTCGCCTCCTGCCGTCCACAACACTGGGTGAAATTTAGTCCTCATGTTATGAATGTCAAATGGTAAATTGATTCTCCTATTGCTTTTGCAGCTGCCAGAAATTCCACTAAAAGTGTTCTGACTATTTTGGTTAACTAGATTGTAAATCAAAGATATGACTTGACTTTAATTTGTGCTTCCATATATTTGCAGGGTAAAACGCTGGCCTTTGTTTTACCCATATTGGAGTCCCTAACGAATGGTCCTACTAAAGCATTACGAAAAACAGGGTATGGGAAGGCTCCTAGTGTTCTGGTGCTTTTACCTACTAGGGAATTGGCACTTCAGGTATATATTATCAGCCTTCTGTAGGTGTTGTTTCACTCACTGTAAACCAATGGGTGCATTTCTTGTAAGTAGCATCTTGTTAATTTGGTAATTGCAGGTGTTTGCTGACTTTGAAGTCTATGGCCGGGCTGTTGGGCTCACTTCATGCTGTTTGTATGGAAATTCTCCTATGGGGGCACAACAGGCTCAACTAAAAAGAGGAGTTGACATTGTAGTGGGTACTCCTGGAAGGGTTAAGGTAAGGTTTGCTGATATACAAATTGAGTTTCATTCACTTTTATGGAGTGAAAAGTTGACTGCTTCAAAATTCTGCTGCAGGACCACATTGAAAGGGGAAATATTGATTTCGGGTCTTTGAAGTTCCGTGTTCTTGATGAAGTCGATGAAATGTTAAAAATTGGTTTTGTAGATGATGTCGAATTTAT</genome_strand>
        <mrna_strand>TGCTTCTGCGCCTAACTGCAGAATACACCGTTTTCGGCAGGAGAGCAATTCCCCCTACAAACAAAGTCATCATGCCTGCACTTGTTGTAACTGAAGAAACAATGGCCTCCGAGCTATCCAAGAAAAAAATGAAGAAGACACCCAAAACTGATATTGAAACTCCTACTGATAAGAAAACCAAAGAGAAAAAGTCAAAAAAATCCAAGATTGAGTCTGGGTCTGATTCAGAGGACGCTAAAAGGAGTAAAAAGAAAGAGAAAAAGAGAAAAGCTTTGGACTTGGATGGTGAGAAGAGTGATACGAGCTCAGAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGATGTGATTTGGTTGGTCGAGCTCGTACTGGGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAAACGCTGGCCTTTGTTTTACCCATATTGGAGTCCCTAACGAATGGTCCTACTAAAGCATTACGAAAAACAGGGTATGGGAAGGCTCCTAGTGTTCTGGTGCTTTTACCTACTAGGGAATTGGCACTTCAG.................................................................................................GTGTTTGCTGACTTTGAAGTCTATGGCCGGGCTGTTGGGCTCACTTCATGCTGTTTGTATGGAAATTCTCCTATGGGGGCACAACAGGCTCAACTAAAAAGAGGAGTTGACATTGTAGTGGGTACTCCTGGAAGGGTTAAG................................................................................GACCACATTGAAAGGGGAAATATTGATTTCGGGTCTTTGAAGTTCCGTGTTCTTGATGAAGTCGATGAAATGTTAAAAATTGGTTTTGTAGATGATGTCGAATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316970" ref_strand="+" ref_description="SGN-U316970        Tomato 200607 #1 [22 ESTs aligned] arabidopsis/peptide: | Symbol: None | DEAD box RNA helicase (PRH75), nearly identical to RNA helicase (Arabidopsis thaliana) GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain | chr5:24997494-25001199 REVERSE | Aliases: MMI9.2, MMI9_2(evalue: 4e-130, score=461) genbank/nr: gi|7211427|gb|AAF40306.1| RNA helicase [Vigna radiata](evalue: 3e-141, score=504)">
      <seq>ttcttgatgaagtcgatgaaatgttaaaaattggttttgtagatgatgtcgaatttattttaggcaaggtcgaagatgcaagcctagttcaaacagttcttttcagtgccactttgccagtctgggtgaagcatattgcttctaagtttctgaaaccagataagaaaacggctgaccttgttggtaatgagaaaatgaaggccagtaaaaatgtgaggcatattattattccatgctctagttctgcaagacctcagcttattcctgatatcattcggtgctacggcagtggaggacgtacaattatttttactgagacaagggcgctggcttcagagctagctggcttactgcctggggcaagtgctttgcatggggagatacaacagaaccagcgtgaggctacacttaaaggattcagatcaggcaaattcatgacattagtggccacaaatgtggcagcccgtggattggatatcgatgatgttcagttaattatccagtgcgaagccactagtgacgtggaagcatacattcatcgatctggaaggacaggacgggctggaaagagtggcgttgctgtaatgctgtatgatccaaggaagtcaaacatttctagaatcgaaaaagaatctggtgtgacctttgagcatttgtctgctcctcagccagctgatgttgccaaggcagctgggaaagaagctgctgatataattgcggatatttctgatagtgtcatacctgtatttaaggctgctgcagaggagcttctgaatacttctgacctatcaccagcagaattacttgcgaaagctcttgccaaggctgctggctattctgagatcaagactcgatcgcttcttacttctatggagaactgtgttactctgcttctcgagtgtgggagacccatcttctcaccttcctttgtctatagtgtcctgaggaggttcttgcctgaggagaaggttgaatcaatcaatggtcttactttgacagctgatggaaagggggcagtttttgatgttgctgctgagcacttggatgaatttctctcaggccaaaaaactgcacatggggtaaatatagaggttgtggaagcgctgcctcctttgcaagagagagagaagccaagaggtggaagatttggaggtggtggccgtggcggcggcttcggtaacagaagaggcggaggtggcttttctggaggaagaggggggagaggtaatggcaactttggtcgcagatggtaaggaatggcgacataatttttttgatagctgacaatacaagagtttgtccaaggctgcgttcaaaattttggtatagtgaagaaaatgtatgggacttcagtaaggtttcttctgtattaattttactaatttatataggtttctcctccctgtaccctgcttcattatgcttttcgctagttagctttcttgtagtgttcttccatgttttactatatttttggttagacacttgaaaagttattatttattttgtatggtattgttacctgaagaaatcatattcaattcaagttcaatttactaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0271L05.1" temp_strand="+" temp_description="C06HBa0271L05.1  AC211068.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0271L05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99144" stop="119907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99444" g_stop="99506" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99507" i_stop="99710" i_length="204">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99711" g_stop="99781" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="134" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99782" i_stop="100004" i_length="223">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100005" g_stop="100159" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="289" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100160" i_stop="100251" i_length="92">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.726" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100252" g_stop="100363" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="401" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100364" i_stop="100591" i_length="228">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100592" g_stop="100693" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="503" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100694" i_stop="100783" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100784" g_stop="100844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="564" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="100845" i_stop="100931" i_length="87">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100932" g_stop="101100" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="733" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="101101" i_stop="101172" i_length="72">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="101173" g_stop="101269" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="830" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="101270" i_stop="101353" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="101354" g_stop="101448" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="831" r_stop="925" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="101449" i_stop="102251" i_length="803">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="102252" g_stop="102385" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="926" r_stop="1059" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="102386" i_stop="102598" i_length="213">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="102599" g_stop="103123" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1060" r_stop="1584" r_length="525" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0271L05.1" gen_strand="+" ref_id="SGN-U316970" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0271L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99444" e_stop="99506"/>
          <exon e_start="99711" e_stop="99781"/>
          <exon e_start="100005" e_stop="100159"/>
          <exon e_start="100252" e_stop="100363"/>
          <exon e_start="100592" e_stop="100693"/>
          <exon e_start="100784" e_stop="100844"/>
          <exon e_start="100932" e_stop="101100"/>
          <exon e_start="101173" e_stop="101269"/>
          <exon e_start="101354" e_stop="101448"/>
          <exon e_start="102252" e_stop="102385"/>
          <exon e_start="102599" e_stop="103123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGATGAAGTCGATGAAATGTTAAAAATTGGTTTTGTAGATGATGTCGAATTTATTTTAGGTATGCTATGAGTCAGAAATCTCTTCCTATAGAAGTTGTGGTTTTTACCCCTCCATATCTATACTATGGTGTTACAGATGTTAGGACGAAATTCTGACAACTGATATTTGCCAGTGCATTACTGTTCTGTTGAGGGATTTTCTATTTTATGGTTATTGACACTTTAATGCTTTTCTGTTTCTTTTATTCCTTTGTGATTCAAAGGCAAGGTCGAAGATGCAAGCCTAGTTCAAACAGTTCTTTTCAGTGCCACTTTGCCAGTCTGGGTGAAGCATGTACGTAGTTGTACCTTTTGTTTTTGAATTCACAATACAGTATCCTGTACTGGGGAATATTTCATGCAATTTTTTATTTAATATCAGTTCAATTGTTCTCTACCTAAGGCTTGATAAACAAATTACCTTGAGGTTGGAAATTAGAGGGCAGGTGCCGTGTGCAACTGCTGTGCTCTTAGCTTGCACTTCTTTCTCTCTTACTGAAACATGTTTTTGGTGCCAGATTGCTTCTAAGTTTCTGAAACCAGATAAGAAAACGGCTGACCTTGTTGGTAATGAGAAAATGAAGGCCAGTAAAAATGTGAGGCATATTATTATTCCATGCTCTAGTTCTGCAAGACCTCAGCTTATTCCTGATATCATTCGGTGCTACGGCAGGTTGGTTGCTTCTCATTTTCCAGTGTCTTCCATTTAAAGCATGACGTGAACCTCTGAAATGACTATAATCTTTTTGTTCCATGGAAAATTAGTGGAGGACGTACAATTATTTTTACTGAGACAAGGGCGCTGGCTTCAGAGCTAGCTGGCTTACTGCCTGGGGCAAGTGCTTTGCATGGGGAGATACAACAGAACCAGCGTGAGGTAGAATTTTCTGAAATACATGCTCTATTTTACTGTGCTCTCCTCATCATCCATCATCTTCTTTTCGGGTTCCACCCCTTCCGTATCTTCCTTACAGTGTTGATTATACAAATATGCAGTATTTGTCATCAACCTTCTACACTCATTAACAAATTGATAATTATGTGTAGCTAAGTCGAGTCTCGTAGAAACAACTAACAACCCTTTATCATTTTCACATGTTCTCAGGCTACACTTAAAGGATTCAGATCAGGCAAATTCATGACATTAGTGGCCACAAATGTGGCAGCCCGTGGATTGGATATCGATGATGTTCAGTTAATTATCCAGGTTTTGTTACAACGTTCATGTTCCATGCTTGATTCTTAAACTTTATTGGTATTTGAGTGCTGATTGTGATTAATATTTCTGTGCGTAAAGTGCGAAGCCACTAGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTGGTGAGTTTCTAATGTTGGGATTGCTTTCATTGGCTTACATAAATTAGGGAGCATTGTTAGTAACTTTATTTTTCCGTCACATTCCAGGAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGGTATTTCTGATAGGTATGGTTTCATTTGTGCCTGGTTAATTTTGAAATGTATCATTTTATTAATTTTCATTTCAACTATGTATAGTGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCTGTATGTTTCTGTTGTCTTATTTATTCTCTCTGGGAGGCAAACCTCCTTATCTTACTGTTGACTATCTTGTGTCTTGCTTTCCAGGGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTCGTGAGTATTTAAAATTTGAAATATGATGTTTATCGAATTGCAAGTATGAATTGTGGCTAGTGCATTTCAATGGCTCAAATTGTGTGTGTTTGGTATTGAAGGAAAATGTTTGCTTGGAGAATGTTTTTCACGAAAATAAGGGTTTCTTACTAATTTTTATGTTTGGTACCTAAGCAGCAAGTATTATCCTAAAAACTTCTGACATAATCTAGACAAATATTATTGGGGTCTGTGGGGTGGTGCACATGGGGCTACAGGCATGTCACTTGGGAAACTTGTTTTTCCTACTTCCACTAGGGAAAGTCATTTTCCACATTTTTAAGAAACTTGTTTTCCTGGACAAATGTTTCCCAAAATTTTCGACCAACTGAACTTGGAAAAATTGGAAAATGTTTTCTTCCATGTTGAACTTCATCTAAGCATATCCACAAGAAAACTCTAAACACATCTTCTGAATTCGCAAGCAAGGATGTAGGCAGGGAACCATGTTCGTAGTCTCAGATCAGTGTTTCTACCCATTTATATAAAATTAGCTACAAAATGAAGTTGGTACAATAATTACACTAAATGGATTCATGAAGGGTAAGTTTCTCATTGTTCCCTATTGGAAGTAGTGAATTACATTACAGGTTTCCAGCATCTTGCATCAGAGATCCGTTATGCTAAGTAGTGCTTTTAATTTACATCAAACTGACCTTAATTTATTTTGAGACATGATGAAGCTGATTGTCTAGGAGTCTTATAAACTGTTGTCGTGCTCAGTCCAATAATTCTGATTTTGTTACCTGTTATGTCAATGGCAGCTTTGTCTATAGTTTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAGGTATAGTGCTCCATATTTCTGCAGATGATTCAATGAATATGTCACATTATAATCACTCAACAGTAGTGGTATAATTTGTCATTAGAGTTTGTTCACTTCATTTTTTTTCATGTTTCTGTTTAGGCAGGGTAGATCTGCCTAGTTGCTATATTTGATTGTTGTAGCTTTTCTAATGTCTGCTTCTCCCTTTGTCTTTTCCTGTGGGATTTTCAGGCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCTTGTAGTGTTCTTCCATGTTTTACTATATTTTTGGTTAGACACTTGAAAAGTTATTATTTATTTTGTATGGTATTGTTACCTGAAGAAATCATATTCAATTCAAGTTCAATTTACTATATGTTTGGTTACACACTTAAAAAG</genome_strand>
        <mrna_strand>TTCTTGATGAAGTCGATGAAATGTTAAAAATTGGTTTTGTAGATGATGTCGAATTTATTTTAG............................................................................................................................................................................................................GCAAGGTCGAAGATGCAAGCCTAGTTCAAACAGTTCTTTTCAGTGCCACTTTGCCAGTCTGGGTGAAGCAT...............................................................................................................................................................................................................................ATTGCTTCTAAGTTTCTGAAACCAGATAAGAAAACGGCTGACCTTGTTGGTAATGAGAAAATGAAGGCCAGTAAAAATGTGAGGCATATTATTATTCCATGCTCTAGTTCTGCAAGACCTCAGCTTATTCCTGATATCATTCGGTGCTACGGCAG............................................................................................TGGAGGACGTACAATTATTTTTACTGAGACAAGGGCGCTGGCTTCAGAGCTAGCTGGCTTACTGCCTGGGGCAAGTGCTTTGCATGGGGAGATACAACAGAACCAGCGTGAG....................................................................................................................................................................................................................................GCTACACTTAAAGGATTCAGATCAGGCAAATTCATGACATTAGTGGCCACAAATGTGGCAGCCCGTGGATTGGATATCGATGATGTTCAGTTAATTATCCAG..........................................................................................TGCGAAGCCACTAGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTG.......................................................................................GAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGATATTTCTGATAG........................................................................TGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCT....................................................................................GGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTCTATAGTGTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAG.....................................................................................................................................................................................................................GCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCTTGTAGTGTTCTTCCATGTTTTACTATATTTTTGGTTAGACACTTGAAAAGTTATTATTTATTTTGTATGGTATTGTTACCTGAAGAAATCATATTCAATTCAAGTTCAATTTACTAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335903" ref_strand="+" ref_description="SGN-U335903        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | DEAD box RNA helicase (PRH75), nearly identical to RNA helicase (Arabidopsis thaliana) GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain | chr5:24997494-25001199 REVERSE | Aliases: MMI9.2, MMI9_2(evalue: 3e-62, score=236) genbank/nr: Helicase,(evalue: 2e-66, score=255)">
      <seq>cactaatgtggcagcccgtggattggatatcgatgatgttcagttaattatccagtgcgaagccactagtgacgtggaagcatacattcatcgatctggaaggacaggacgggctggaaagagtggcgttgctgtaatgctgtatgatccaaggaagtcaaacatttctagaatcgaaaaagaatctggtgtgacctttgagcatttgtctgctcctcagccagctgatgttgccaaggcagctgggaaagaagctgctgatataattgcggatatttctgatagtgtcatacctgtatttaaggctgctgcagaggagcttctgaatacttctgacctatcaccagcagaattacttgcgaaagctcttgccaaggctgctggctattctgagatcaagactcgatcgcttcttacttctatggagaactgtgttactctgcttctcgagtgtgggagacccatcttctcaccttcctttgtctatagtgtcctgaggaggttcttgcctgaggagaaggttgaatcaatcaatggtcttactttgacagctgatggaaagggggcagtttttgatgttgctgctgagcacttggatgaatttctctcaggccaaaaaactgcacatggggtaaatatagaggttgtggaagatttggaggtggtggccgtggcggcggcttcggtaacagaagaggcggaggtggcttttctggaggaagaggggggagaggtaatggcaactttggtcgcagatggtaaggaatggcgacatactttttttgatagctgacaatacaagagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0271L05.1" temp_strand="+" temp_description="C06HBa0271L05.1  AC211068.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0271L05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100339" stop="103138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100639" g_stop="100693" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100694" i_stop="100783" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100784" g_stop="100844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="116" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100845" i_stop="100931" i_length="87">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100932" g_stop="101100" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="285" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101101" i_stop="101172" i_length="72">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101173" g_stop="101269" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="382" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101270" i_stop="101353" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101354" g_stop="101448" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="477" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101449" i_stop="102251" i_length="803">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102252" g_stop="102385" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="611" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="102386" i_stop="102598" i_length="213">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="102599" g_stop="102633" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="646" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="102634" i_stop="102683" i_length="50">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.67"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="102684" g_stop="102838" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="808" r_length="162" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0271L05.1" gen_strand="+" ref_id="SGN-U335903" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0271L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100639" e_stop="100693"/>
          <exon e_start="100784" e_stop="100844"/>
          <exon e_start="100932" e_stop="101100"/>
          <exon e_start="101173" e_stop="101269"/>
          <exon e_start="101354" e_stop="101448"/>
          <exon e_start="102252" e_stop="102385"/>
          <exon e_start="102599" e_stop="102633"/>
          <exon e_start="102684" e_stop="102838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATGTGGCAGCCCGTGGATTGGATATCGATGATGTTCAGTTAATTATCCAGGTTTTGTTACAACGTTCATGTTCCATGCTTGATTCTTAAACTTTATTGGTATTTGAGTGCTGATTGTGATTAATATTTCTGTGCGTAAAGTGCGAAGCCACTAGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTGGTGAGTTTCTAATGTTGGGATTGCTTTCATTGGCTTACATAAATTAGGGAGCATTGTTAGTAACTTTATTTTTCCGTCACATTCCAGGAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGGTATTTCTGATAGGTATGGTTTCATTTGTGCCTGGTTAATTTTGAAATGTATCATTTTATTAATTTTCATTTCAACTATGTATAGTGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCTGTATGTTTCTGTTGTCTTATTTATTCTCTCTGGGAGGCAAACCTCCTTATCTTACTGTTGACTATCTTGTGTCTTGCTTTCCAGGGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTCGTGAGTATTTAAAATTTGAAATATGATGTTTATCGAATTGCAAGTATGAATTGTGGCTAGTGCATTTCAATGGCTCAAATTGTGTGTGTTTGGTATTGAAGGAAAATGTTTGCTTGGAGAATGTTTTTCACGAAAATAAGGGTTTCTTACTAATTTTTATGTTTGGTACCTAAGCAGCAAGTATTATCCTAAAAACTTCTGACATAATCTAGACAAATATTATTGGGGTCTGTGGGGTGGTGCACATGGGGCTACAGGCATGTCACTTGGGAAACTTGTTTTTCCTACTTCCACTAGGGAAAGTCATTTTCCACATTTTTAAGAAACTTGTTTTCCTGGACAAATGTTTCCCAAAATTTTCGACCAACTGAACTTGGAAAAATTGGAAAATGTTTTCTTCCATGTTGAACTTCATCTAAGCATATCCACAAGAAAACTCTAAACACATCTTCTGAATTCGCAAGCAAGGATGTAGGCAGGGAACCATGTTCGTAGTCTCAGATCAGTGTTTCTACCCATTTATATAAAATTAGCTACAAAATGAAGTTGGTACAATAATTACACTAAATGGATTCATGAAGGGTAAGTTTCTCATTGTTCCCTATTGGAAGTAGTGAATTACATTACAGGTTTCCAGCATCTTGCATCAGAGATCCGTTATGCTAAGTAGTGCTTTTAATTTACATCAAACTGACCTTAATTTATTTTGAGACATGATGAAGCTGATTGTCTAGGAGTCTTATAAACTGTTGTCGTGCTCAGTCCAATAATTCTGATTTTGTTACCTGTTATGTCAATGGCAGCTTTGTCTATAGTTTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAGGTATAGTGCTCCATATTTCTGCAGATGATTCAATGAATATGTCACATTATAATCACTCAACAGTAGTGGTATAATTTGTCATTAGAGTTTGTTCACTTCATTTTTTTTCATGTTTCTGTTTAGGCAGGGTAGATCTGCCTAGTTGCTATATTTGATTGTTGTAGCTTTTCTAATGTCTGCTTCTCCCTTTGTCTTTTCCTGTGGGATTTTCAGGCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAG-------ATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTG</genome_strand>
        <mrna_strand>CACTAATGTGGCAGCCCGTGGATTGGATATCGATGATGTTCAGTTAATTATCCAG..........................................................................................TGCGAAGCCACTAGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTG.......................................................................................GAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGATATTTCTGATAG........................................................................TGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCT....................................................................................GGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTCTATAGTGTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAG.....................................................................................................................................................................................................................GCCAAAAAACTGCACATGGGGTAAATATAGAGGTT..................................................GTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATACTTTTTTTGATAGCTGACAATACAAGAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335902" ref_strand="+" ref_description="SGN-U335902        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | DEAD box RNA helicase (PRH75), nearly identical to RNA helicase (Arabidopsis thaliana) GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain | chr5:24997494-25001199 REVERSE | Aliases: MMI9.2, MMI9_2(evalue: 1e-52, score=203) genbank/nr: gi|40287564|gb|AAR83896.1| RNA helicase PRH75 [Capsicum annuum] (evalue: 1e-68, score=263)">
      <seq>cgttacgtggaagcatacattcatcgatctggaaggacaggacgggctggaaagagtggcgttgctgtaatgctgtatgatccaaggaagtcaaacatttctagaatcgaaaaagaatctggtgtgacctttgagcatttgtctgctcctcagccagctgatgttgccaaggcagctgggaaagaagctgctgatataattgcggatatttctgatagtgtcatacctgtatttaaggctgctgcagaggagcttctgaatacttctgacctatcaccagcagaattacttgcgaaagctcttgccaaggctgctgtatgtttctgttgtcttatttattctctctgggaggcaaacctccttatcttactgttgactatcttgtgtcttgctttccagggctattctgagatcaagactcgatcgcttcttacttctatggagaactgtgttactctgcttctcgagtgtgggagacccatcttctcaccttcctttgtctatagtgtcctgaggaggttcttgcctgaggagaaggttgaatcaatcaatggtcttactttgacagctgatggaaagggggcagtttttgatgttgctgctgagcacttggatgaatttctctcaggccaaaaaactgcacatggggtaaatatagaggttgtggaagcgctgcctcctttgcaagagagagagaagccaagaggtggaagatttggaggtggtggccgtggcggcggcttcggtaacagaagaggcggaggtggcttttctggaggaagaggggggagaggtaatggcaactttggtcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0271L05.1" temp_strand="+" temp_description="C06HBa0271L05.1  AC211068.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0271L05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100497" stop="103083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100796" g_stop="100844" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100845" i_stop="100931" i_length="87">
            <donor d_prob="0.913" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100932" g_stop="101100" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="218" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101101" i_stop="101172" i_length="72">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101173" g_stop="101448" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="494" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101449" i_stop="102251" i_length="803">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102252" g_stop="102385" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="628" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102386" i_stop="102598" i_length="213">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102599" g_stop="102783" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="813" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0271L05.1" gen_strand="+" ref_id="SGN-U335902" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0271L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100796" e_stop="100844"/>
          <exon e_start="100932" e_stop="101100"/>
          <exon e_start="101173" e_stop="101448"/>
          <exon e_start="102252" e_stop="102385"/>
          <exon e_start="102599" e_stop="102783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTGGTGAGTTTCTAATGTTGGGATTGCTTTCATTGGCTTACATAAATTAGGGAGCATTGTTAGTAACTTTATTTTTCCGTCACATTCCAGGAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGGTATTTCTGATAGGTATGGTTTCATTTGTGCCTGGTTAATTTTGAAATGTATCATTTTATTAATTTTCATTTCAACTATGTATAGTGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCTGTATGTTTCTGTTGTCTTATTTATTCTCTCTGGGAGGCAAACCTCCTTATCTTACTGTTGACTATCTTGTGTCTTGCTTTCCAGGGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTCGTGAGTATTTAAAATTTGAAATATGATGTTTATCGAATTGCAAGTATGAATTGTGGCTAGTGCATTTCAATGGCTCAAATTGTGTGTGTTTGGTATTGAAGGAAAATGTTTGCTTGGAGAATGTTTTTCACGAAAATAAGGGTTTCTTACTAATTTTTATGTTTGGTACCTAAGCAGCAAGTATTATCCTAAAAACTTCTGACATAATCTAGACAAATATTATTGGGGTCTGTGGGGTGGTGCACATGGGGCTACAGGCATGTCACTTGGGAAACTTGTTTTTCCTACTTCCACTAGGGAAAGTCATTTTCCACATTTTTAAGAAACTTGTTTTCCTGGACAAATGTTTCCCAAAATTTTCGACCAACTGAACTTGGAAAAATTGGAAAATGTTTTCTTCCATGTTGAACTTCATCTAAGCATATCCACAAGAAAACTCTAAACACATCTTCTGAATTCGCAAGCAAGGATGTAGGCAGGGAACCATGTTCGTAGTCTCAGATCAGTGTTTCTACCCATTTATATAAAATTAGCTACAAAATGAAGTTGGTACAATAATTACACTAAATGGATTCATGAAGGGTAAGTTTCTCATTGTTCCCTATTGGAAGTAGTGAATTACATTACAGGTTTCCAGCATCTTGCATCAGAGATCCGTTATGCTAAGTAGTGCTTTTAATTTACATCAAACTGACCTTAATTTATTTTGAGACATGATGAAGCTGATTGTCTAGGAGTCTTATAAACTGTTGTCGTGCTCAGTCCAATAATTCTGATTTTGTTACCTGTTATGTCAATGGCAGCTTTGTCTATAGTTTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAGGTATAGTGCTCCATATTTCTGCAGATGATTCAATGAATATGTCACATTATAATCACTCAACAGTAGTGGTATAATTTGTCATTAGAGTTTGTTCACTTCATTTTTTTTCATGTTTCTGTTTAGGCAGGGTAGATCTGCCTAGTTGCTATATTTGATTGTTGTAGCTTTTCTAATGTCTGCTTCTCCCTTTGTCTTTTCCTGTGGGATTTTCAGGCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGC</genome_strand>
        <mrna_strand>CGTTACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTG.......................................................................................GAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGATATTTCTGATAG........................................................................TGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCTGTATGTTTCTGTTGTCTTATTTATTCTCTCTGGGAGGCAAACCTCCTTATCTTACTGTTGACTATCTTGTGTCTTGCTTTCCAGGGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTCTATAGTGTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAG.....................................................................................................................................................................................................................GCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340496" ref_strand="+" ref_description="SGN-U340496        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger protein-related, contains Pfam profiles PF03108: MuDR family transposase, PF04434: SWIM zinc finger | chr1:23851419-23853578 FORWARD | Aliases: F22C12.28, F22C12_28(evalue: 2e-21, score=100) genbank/nr: Zinc(evalue: 9e-30, score=133)">
      <seq>agatgcaaatgaaatctgcagtaagagcatatagttcttctattaaaaaagaatttctttgtgatcaatccaaaagtaaaagttggaaatttatttgcaagcgtcatgagttatggtgtgattggatgattcggtttagagagatctcaagcgatatgtggaagacagaaaaaatgattgaaccgcatacttgtcttacagataattataaggaggatcatttcaatttgattgataacatgattgccacttcattaataccatatgttatgcaaaattcggacataaatattaagatgatccgtgaaattatcaaaggaaagcatcactatactcctagttatagaaaattacaaaaaggtcgaagaaaagcatttcgaatggtttatggtgattttgaaagttcatttaaagcattacctcgatacatggctgcactacaattattcaatccaggcactattattgagtgggagcatcattctacaacaatgcaagatgagcaaatttttaaatttctttttagggcttttaaacagagcattgatggtttcaaaagttgtaggctggtcatttctatcgacggcacacatctttatggtttgtataatatcaaattgttaattgcggttggaattgacgcggatggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0271L05.1" temp_strand="+" temp_description="C06HBa0271L05.1  AC211068.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0271L05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="104813" stop="106065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105113" g_stop="105765" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0271L05.1" gen_strand="+" ref_id="SGN-U340496" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0271L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105113" e_stop="105765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGCAAATGAAATCTGCAGTAAGAGCATATAGTCTTGCTATTAAAAAAGAATTTCTTTGTGATCAATCCAAAAGTAAAAGTTGGAAAGTTATTTGCAAGCGTCATGAGTTAGGGTGTGATTGGATGATTCGGTTTAGAGAGATTTCAAGCGGTATATGGAAGACAGGAAAAATGATTGAACCGCATACTTGTCTTACAGATAACTATAAGGAGGATCATTTCAATTTGAATGATAACATGATTGCCACTTCATTAATACCATATGTTATGCAAAATTCGGACATAAATATTAAGATGATCCGTGAAATTATCAAAGGAAAGCATCACTATACTCCTAGTTACAGAAAAGCACAAAAAGGTCGAAGAAAAGTATTTCGAATGGTTTATGGTGATTTTGAAAGTTCATTTAAGGCATTACCTCGATACATGGCTGCACTACAATTATTCAATCCAAGCACTATTATTGAGTGGGAGCATCATTCTACAACAATGCAAGGTGAGCAAATTTTTAAATTTCTTTTTTGGGCTTTTAAACAGAGCATTGATGGTTTCAAAAGTTGTAGGCCGGTCATTTCTATCGACGGCACACATCTTTATGGTTTGTATGATATCAAATTGTTAATTGCGGTTGGAATTGATGCGAATGGAAAT</genome_strand>
        <mrna_strand>AGATGCAAATGAAATCTGCAGTAAGAGCATATAGTTCTTCTATTAAAAAAGAATTTCTTTGTGATCAATCCAAAAGTAAAAGTTGGAAATTTATTTGCAAGCGTCATGAGTTATGGTGTGATTGGATGATTCGGTTTAGAGAGATCTCAAGCGATATGTGGAAGACAGAAAAAATGATTGAACCGCATACTTGTCTTACAGATAATTATAAGGAGGATCATTTCAATTTGATTGATAACATGATTGCCACTTCATTAATACCATATGTTATGCAAAATTCGGACATAAATATTAAGATGATCCGTGAAATTATCAAAGGAAAGCATCACTATACTCCTAGTTATAGAAAATTACAAAAAGGTCGAAGAAAAGCATTTCGAATGGTTTATGGTGATTTTGAAAGTTCATTTAAAGCATTACCTCGATACATGGCTGCACTACAATTATTCAATCCAGGCACTATTATTGAGTGGGAGCATCATTCTACAACAATGCAAGATGAGCAAATTTTTAAATTTCTTTTTAGGGCTTTTAAACAGAGCATTGATGGTTTCAAAAGTTGTAGGCTGGTCATTTCTATCGACGGCACACATCTTTATGGTTTGTATAATATCAAATTGTTAATTGCGGTTGGAATTGACGCGGATGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319653" ref_strand="+" ref_description="SGN-U319653        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>cagtatcgtcgagctcggatgattgaaaatgatgaaaatcaatctaatgaaatgagacaatatgcagcggaagtcgctcgtatttcaatggagtcaatgaatgcagcctttcaaggaacgcgattgagctttgatcatgattacaatcctcccactcaatacgatgaaccaccaccagtacaagtatctcgccgatcacgacaaacaacaccgagagagggtgctcgtcgaggtagaaggaccactagtgaaacagctgatttttctgcagggccctctaacactaatgtggcgactcccgagccttattatcccacatttgatttttctgtagggccctctaacactaatccaaatttttctagtcagcaaacagttggttttgtaactccgcaggttccaatatctgggtttgcacaatttagtggttctcaatatggttttcaacatggtatgcgtgaatttccgatacataattctccatttggtggaagattgaatttttcgaatgtaactgcgtttgatgattcaagatttaatgttggggcttcacaaaatttagttcttaatagacaaaatccacctcggagaacatctaggctacacaaatcaactagatgtggaacaggcagtcactatcaaaatgaggaagattttgaaaatgaagatgaaaatgaagatgagaatgaagatgtagaagattcggattcagaagaataattttttttatgcacctttattctaaaaggctaaagattcgaattttgaaatatgtaaattttgttgtttcgtgcaagtttgaacaaagtaatgagattatgttgaacaagttgaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaactcgaggggggcccggtccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0271L05.1" temp_strand="-" temp_description="C06HBa0271L05.1  AC211068.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0271L05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="108625" stop="49893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108325" g_stop="107816" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107815" i_stop="107716" i_length="100">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107715" g_stop="107392" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="833" r_length="323" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107391" i_stop="106868" i_length="524">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.56"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106867" g_stop="106814" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="834" r_stop="887" r_length="54" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0271L05.1" gen_strand="-" ref_id="SGN-U319653" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0271L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108325" e_stop="107816"/>
          <exon e_start="107715" e_stop="107392"/>
          <exon e_start="106867" e_stop="106814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTATCGTCGAGCTCGGATGATTGAAAATGATGAAAATCAATCTAATGAAATGAGACAATATGCAGCGGAAGTCGCTCGTATTTCAATGGAGTCAATGAATGCGGCCTTTCAGGGAACGCGATTGAGCTTTGATCATGATTACAATCCTCCCACTCAATACGATGAACCACCACCAGTACAAGTATCTCGCCGATCACGACAAACAACACCGAGAGAGGGTGCTCGTCGAGGTAGAAGGATCACTAGTGAAACAACTGATTTTTCTGCAGGGCCCTCTAACACTAATGTGGCGACTCCCGAGCCTTATTATCCCACATTTGATTTTTCTGTAGGGCCCTCTAACACTAATCCGAATTTTTCTAGTCAGCAAACAGTTGGTTTTGTAACTCCGCAGGTTCCAATATCTGGGTTTGCACAATTTAGTGGTTCTCAATATGGTTTTCAACATGGTATGCGTGAATTTCCGATACATAATTCTCCATTTGGTGGAAGATTGAATTTTTCGAATGTAAGTATAATTATTTTCATATAATTTTTTTAACTTTTTATATTTTTTTTTATTTTTATTGCATGTTTATTTGATTATATTATGTTATATTGTATTATAGGTAACTGCGTTTGATGATTCAAGATTTAATGCTGGGGCTTCACAAAATTTAGTTCTTAATAGACAAAATCCACCTCGGAGAACATCTAGGCTACACAAATCAACTAGATGTGGAACAGGCAGTCACAATCAAAATGAGGAAGATTTTGAAAATGAAGATGAAAATGAAGATGAGAATGAAGATGTAGAAGATTCTGATTCAGAAGAATAATTTTTTTTATGCACCTTTATTCTAAAAGGCTGAAGATTCGAATTTTGAAATATGTAAATTTTGTTGTTTCGTGCAAGTTTGAACAAAGTAATGAGATTATGTTTGAACAAGTTTGCAGGATTTACTTTTCTTTTTGTAATAGGTCAAATCAATACTTTTTATGTTATGTCAAATCAATACTTTTTATATTAGGTCAAATCATTATTTTTTAATAGAGTTCAAATCAGTAATATAATAATAATGTAAAGATATTATACGTACAATATTTAAAATGCACAAGACAAATTAAATTCATGTTAACAAATATATATAAAAGATATATCATATGTCAAATCAATACTTTTTATTAACATTTTTGTATGTTTGAACAAGTTTGCAGGATTTACTTTTTTTTTATCTCAAATCAATACTTTTTGTCAACATTTTTGTATGTTTGAACAAGTTTGCAGGATTTACTTTTTTTTTATCATTAGTCAAATCAATACTTTTTATGTTAGGTCAAATCAATACTTTTTATATTAGATAAAATCATTATTTTTTACGTACAATATTTAAAATGCACAAGACAAATTAAATTCATGTCAACAAATAAATATAAAAGATATATCATAATATTAATAACAAGATAATAAAAACACATTAACCTTAAAAACATATACAAAATATTTAAAATCGAGTAGGACATCGTGCCT</genome_strand>
        <mrna_strand>CAGTATCGTCGAGCTCGGATGATTGAAAATGATGAAAATCAATCTAATGAAATGAGACAATATGCAGCGGAAGTCGCTCGTATTTCAATGGAGTCAATGAATGCAGCCTTTCAAGGAACGCGATTGAGCTTTGATCATGATTACAATCCTCCCACTCAATACGATGAACCACCACCAGTACAAGTATCTCGCCGATCACGACAAACAACACCGAGAGAGGGTGCTCGTCGAGGTAGAAGGACCACTAGTGAAACAGCTGATTTTTCTGCAGGGCCCTCTAACACTAATGTGGCGACTCCCGAGCCTTATTATCCCACATTTGATTTTTCTGTAGGGCCCTCTAACACTAATCCAAATTTTTCTAGTCAGCAAACAGTTGGTTTTGTAACTCCGCAGGTTCCAATATCTGGGTTTGCACAATTTAGTGGTTCTCAATATGGTTTTCAACATGGTATGCGTGAATTTCCGATACATAATTCTCCATTTGGTGGAAGATTGAATTTTTCGAAT....................................................................................................GTAACTGCGTTTGATGATTCAAGATTTAATGTTGGGGCTTCACAAAATTTAGTTCTTAATAGACAAAATCCACCTCGGAGAACATCTAGGCTACACAAATCAACTAGATGTGGAACAGGCAGTCACTATCAAAATGAGGAAGATTTTGAAAATGAAGATGAAAATGAAGATGAGAATGAAGATGTAGAAGATTCGGATTCAGAAGAATAATTTTTTTTATGCACCTTTATTCTAAAAGGCTAAAGATTCGAATTTTGAAATATGTAAATTTTGTTGTTTCGTGCAAGTTTGAACAAAGTAATGAGATTATG-TTGAACAAGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAACTCGAGGGGGGCCCGGTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319654" ref_strand="+" ref_description="SGN-U319654        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: AT1G48120.1 | Symbol: None | calcineurin-like phosphoesterase family protein, contains Pfam profile: PF00149 calcineurin-like phosphoesterase | chr1:17777357-17783293 REVERSE | Aliases: F21D18.16, F21D18_16 (evalue: 1e-11, score=68.2) genbank/nr: gi|8778513|gb|AAF79521.1| F21D18.16 [Arabidopsis thaliana] (evalue: 3e-21, score=73.2)">
      <seq>ttggaagttattaacgataactcaactgagcatgaagttcaacaaagatttagattatatttattatggttatgtggtggatcaatatttccggataaatctaataataagattaatttggacattttgattgacatgagaaatttagatttaatgtcaactcaagcatggggatcggccgcattatcatatttgtataattgtttatgtcgtgcgtcaatgaaaaaatcaaatgaagtttgtggatttctctctttagtgtaggtatacatattttttgattaaatattttttatatactagtaatatgcacttttaaatttaagtgcattataagtaatggtgaatttatttattgtagatttgggcatgggaaagaattattcccctgcaaccattgccaaagcctctaagaaccaatcaatttgaggctttaactgcacttgcacgtaaatggacgcgacgtagaaatcatcaaaatgaggcacgaactgtaatcggtgtgattagggatgtacttgataatctaactgatgaacaagtatttgatattattagtatcttatacttttcatattttattttattttaaataagaatatatttttttctgccaatgttgtttttataattatcttacttaattatttttttatagtttattcggcagccttattcggaagatgttattaatggattgcctgagtggtgtcggtcaggacaacgtgtctggatggcacaggtgccactgatttatggaatttatcgtgagtggcacatggttgatcgtgttgtgagacagttcgattatttacaacatattcctggaccgtgtacccaattttccgaatatcattttaagcgtaataaacgatcaaaaataaaacaagaagatatagatgcatttaactatacacaatatttatgggaacaacgtcaaaatcgtatatttcgacctccatttgtaagtgatcaaacagattacttccgttggtacatgaggcatacccgcatggtcattggaaatccacaacatgttgtacaaaaagggtatcaacacatggcaggaagacatgaggcattagctaggggtcatgaaatgcagtatcgtcgagctcggatgattgaaaatgatgaaaatcaatctaatggaatgagacaatatgcagcggaagtcgctcgtatttcaatggagggaatgaaggcaggctcttaaggaacgcgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0271L05.1" temp_strand="-" temp_description="C06HBa0271L05.1  AC211068.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0271L05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109808" stop="107916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109508" g_stop="108425" g_length="1084"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1084" r_length="1084" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108424" i_stop="108344" i_length="81">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108343" g_stop="108200" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1085" r_stop="1228" r_length="144" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0271L05.1" gen_strand="-" ref_id="SGN-U319654" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>1228</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0271L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109508" e_stop="108425"/>
          <exon e_start="108343" e_stop="108200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAGTTATTAACGATAACTCAACTGAGCATGAAGTTCAACAAAGATTTAGATTATATTTATTATGGTTATGTGGTGGATCAATATTTCCGGATAAATCTAATAATAAGATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGATCGGCCGCATTATCATATTTGTATAATTGTTTATGCCGTGCGTCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTATACATATTTTTTGATTAAATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATGGTGAATTTATTTATTGTAGATTTGGGCATGGAAAAGAATTATTCCCCTGCAACCATTGCCAAAGCCTCTAAGAACCAATCAATTTGAGGCTTTAACTGCACTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTTGATAATCTAACTGATGAACAGGTATTTAATATTATTAGTATCTTATACTTTTCATATTTTATTTTATTTTAAATAAGAATATATTTTTTTCTGCCAATGTTGTTTTTATAATTATCTTACTTAATTATTTTTTTATAGTTTATTTGGCAGCCTTATTCGGAAGATGTTATTAATGGATTGCCTGAGTGGTGTCGGTCAGGACAACGTGTCTGGATGGCACAGGTGCCACTGATTTATGGAATTTATCGTGAGTGGCACATGGTTGATCGTGTTGTGAGACAGTTCGGTTATTTACAACATATTCCTGGACCGTGTACCCAATTTTCCGAATATCATTTTAAGCGTGATAAACGATCAAAAATAAAACAAGAAGATATAGATGCATTTAACTATACACAATATTTATGGGAACAACGTCAAAATCGTATATTTCGACCTCCATTTGTAAGTGATCAAATAGATTACTTCCGTTGGTACATGAGGCATACCCGCATGGTCATTGGAAATCCACAACATGTTGTACAAAAAGGGTATCAACACATGGCAGGAAGACATGAGGCATTAGTATGTATATTACATAAATTTCAAATTATTATGTCAATCTTTAATAAATTTTTTTTATTAATATTTGTTTATTCATTATAGGCTAGGGGTCATGAAATGCAGTATCGTCGAGCTCGGATGATTGAAAATGATGAAAATCAATCTAATGAAATGAGACAATATGCAGCGGAAGTCGCTCGTATTTCAATGGAGTCAATGAATGCGGCCTTTCAGGGAACGCGATTG</genome_strand>
        <mrna_strand>TTGGAAGTTATTAACGATAACTCAACTGAGCATGAAGTTCAACAAAGATTTAGATTATATTTATTATGGTTATGTGGTGGATCAATATTTCCGGATAAATCTAATAATAAGATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGATCGGCCGCATTATCATATTTGTATAATTGTTTATGTCGTGCGTCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGTAGGTATACATATTTTTTGATTAAATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATGGTGAATTTATTTATTGTAGATTTGGGCATGGGAAAGAATTATTCCCCTGCAACCATTGCCAAAGCCTCTAAGAACCAATCAATTTGAGGCTTTAACTGCACTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTTGATAATCTAACTGATGAACAAGTATTTGATATTATTAGTATCTTATACTTTTCATATTTTATTTTATTTTAAATAAGAATATATTTTTTTCTGCCAATGTTGTTTTTATAATTATCTTACTTAATTATTTTTTTATAGTTTATTCGGCAGCCTTATTCGGAAGATGTTATTAATGGATTGCCTGAGTGGTGTCGGTCAGGACAACGTGTCTGGATGGCACAGGTGCCACTGATTTATGGAATTTATCGTGAGTGGCACATGGTTGATCGTGTTGTGAGACAGTTCGATTATTTACAACATATTCCTGGACCGTGTACCCAATTTTCCGAATATCATTTTAAGCGTAATAAACGATCAAAAATAAAACAAGAAGATATAGATGCATTTAACTATACACAATATTTATGGGAACAACGTCAAAATCGTATATTTCGACCTCCATTTGTAAGTGATCAAACAGATTACTTCCGTTGGTACATGAGGCATACCCGCATGGTCATTGGAAATCCACAACATGTTGTACAAAAAGGGTATCAACACATGGCAGGAAGACATGAGGCATTA.................................................................................GCTAGGGGTCATGAAATGCAGTATCGTCGAGCTCGGATGATTGAAAATGATGAAAATCAATCTAATGGAATGAGACAATATGCAGCGGAAGTCGCTCGTATTTCAATGGAGGGAATGAAGGCAGGCTCTTAAGGAACGCGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327844" ref_strand="+" ref_description="SGN-U327844        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT1G48120.1 | Symbol: None | calcineurin-like phosphoesterase family protein, contains Pfam profile: PF00149 calcineurin-like phosphoesterase | chr1:17777357-17783293 REVERSE | Aliases: F21D18.16, F21D18_16 (evalue: 2e-17, score=86.3) genbank/nr: mutator(evalue: 3e-22, score=108)">
      <seq>gtagtttttcaattttccaatattcttgaaaacccttctatttttctaattttttaaagtttttaaaagtcttttttttataaggcgggtatgaatttatttttaatttatttaattaattttatacttttatatgatattttggatatattcaatcttttgatacttatattaatgttaatattttttttattttttgtgtatagatatgcattcctcaaatgtatacgtacatcctggtccagtagagcatgatgtattaaaaattcaagttcatcatcgttccgaaggaatttggaatggtagtataaaagaagagaaatgttgcttatatacgcgtcgtggtgatatttaactttggcaacatttaaaatatcatccattacattctcgcatcgttcaatattttgaaaattgtagatttaaaggaattcttgatgttggatgtgtgccgtatgactccggatttatttctgctttaattgaaaggtggcgtccggaaactcatacttttcacatgcgaactgacgaggctaccataactttacaagatattgaaattttattcggaatggtagtagatggtagtcctataattttaaatggagctgattctttaaggattataggtagacaagaaatgatttttcaattaacaggatggttacccgatactagttgtttttctggtgttagtagattgtcaacatataaattgattgagtatatcgaaggtttggaagttattaacgataactcaactgagcatgaagttcaacaaagatttagattatatttattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0271L05.1" temp_strand="-" temp_description="C06HBa0271L05.1  AC211068.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0271L05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="110455" stop="109142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110250" g_stop="109442" g_length="809"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="803" r_length="803" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0271L05.1" gen_strand="-" ref_id="SGN-U327844" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0271L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110250" e_stop="109442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTACTTTCAATCTTCCACAAT-CTTAAAATTCTTGTTATTCTTCAAATTTTCTAAAGTTTTTCAAAGCATTTTCTTTATAAGGTGAGTTTAAATTTATTTTATTTTTAATTTATTTTAATTAATTTTATACTTTTATATGATATTGTTGATATATTCAATCGTTTGATACTTATATTAATGTTAATTTTTATTTTTATTTTTTGTGTATAGATATGGATCCATCAAATTTATACGTACATCCTGGTCCAGTAGAGCATGATGTATTAAAAATTCAAGTTTATCATCGTTCCGAAGGAATTTGGAATGGTAGCATAAAAGAAGAGAGATGTTGCTTATATACGAGTCGTGGTGATATTGAATTTTGGCAACATTTAAAATATCATCCATTACATTCTCGCATCCTTCAATATTTTGAAAATTGTAGATTTAAAGGAATTCTTGATGTTGGATGTGTGCCGTATGACTCCGGATTAATTTCTGCTTTAATTGAAAGGTGGCGTCCGGAAACTCATACTTTTCACATGCGAACTGGCGAGGCTACCATAACTTTACAAGATATTGAAATTTTATTCGGAATGGTAGTAGATGGTAGTCCTATAATTTTAAATGGAGCTGATTCTTTAAGGATTATAGGTAGACAAGAAATGATTTTTCAATTAACAGGATGGTTACCCGATACTAGTTGTTTTTCTGGTGTTAGTAGATTGTCAACATATAAATTGATTGAGTATATCGAAGGTTTGGAAGTTATTAACGATAACTCAACTGAGCATGAAGTTCAACAAAGATTTAGATTATATTTATTAT</genome_strand>
        <mrna_strand>GTAGTTTTTCAATTTTCCAATATTCTTGAAAACCCTTCTATTTTTCTAATTTTTTAAAGTTTTTAAAAGTCTTTTTTTTATAAGGCG-G-GT-A-TGAATT-TATTTTTAATTTA-TTTAATTAATTTTATACTTTTATATGATATTTTGGATATATTCAATCTTTTGATACTTATATTAATGTTAATATTT-TTTTTATTTTTTGTGTATAGATATGCATTCCTCAAATGTATACGTACATCCTGGTCCAGTAGAGCATGATGTATTAAAAATTCAAGTTCATCATCGTTCCGAAGGAATTTGGAATGGTAGTATAAAAGAAGAGAAATGTTGCTTATATACGCGTCGTGGTGATATTTAACTTTGGCAACATTTAAAATATCATCCATTACATTCTCGCATCGTTCAATATTTTGAAAATTGTAGATTTAAAGGAATTCTTGATGTTGGATGTGTGCCGTATGACTCCGGATTTATTTCTGCTTTAATTGAAAGGTGGCGTCCGGAAACTCATACTTTTCACATGCGAACTGACGAGGCTACCATAACTTTACAAGATATTGAAATTTTATTCGGAATGGTAGTAGATGGTAGTCCTATAATTTTAAATGGAGCTGATTCTTTAAGGATTATAGGTAGACAAGAAATGATTTTTCAATTAACAGGATGGTTACCCGATACTAGTTGTTTTTCTGGTGTTAGTAGATTGTCAACATATAAATTGATTGAGTATATCGAAGGTTTGGAAGTTATTAACGATAACTCAACTGAGCATGAAGTTCAACAAAGATTTAGATTATATTTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327442" ref_strand="+" ref_description="SGN-U327442        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | basix helix-loop-helix (bHLH) family protein, contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain | chr4:12985765-12986693 FORWARD | Aliases: T30C3.80, T30C3_80(evalue: 2e-19, score=92.4) genbank/nr: gi|15242184|ref|NP_199991.1| bHLH protein family [Arabidopsis thaliana] gi|10177877|dbj|BAB11247.1| gene_id:MIO24.9~pir||T10220~similar to unknown protein [Arabidopsis thaliana](evalue: 1e-17, score=92.4)">
      <seq>ttaaggacccctctttcaagatttcccagatcatacagtctaacaaacatatcttttttttttgtcaactaagtagtaattaatcagttcttgtatttaaggtcaaaactgattaattattggtattaatggataatttccattcaatatttcctttacaaccggatgatgatgcgaattatgattcccatcaacaacagctcatttttccacatgaaacctataccaacccttgtaatttcatataccaacaagatctggtaaatgattttgcttcttttgattcattggagttaagagacaacaatcttacatttaacaacaatactaacaacaatcagaaagggaaatcatgtggcgttgaggataagaagaaacacaagaaagtgatgcatagagaaattgaaaggcaaagaagacaagaaatgtctactctttatgcttctcttcgtcaacaacttcctcttgaaaatattaaggggaagcgttccacatcagatcacatacttgaggcagcgaattacatagaacaactacaaaagaatgttaagaatttggaagaaaagagagaaaagttgatgaaagattcaactggtttaagcaatgttgatggcattaacaaaagtggaagatcaacatctagacactgctccccacctgctattgtgacagtgaaagaatgcttggatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0271L05-yomTS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0271L05.1" temp_strand="+" temp_description="C06HBa0271L05.1  AC211068.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0271L05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123166" stop="124611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123466" g_stop="123945" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123946" i_stop="124097" i_length="152">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.650" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124098" g_stop="124311" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="693" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0271L05.1" gen_strand="+" ref_id="SGN-U327442" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0271L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123466" e_stop="123945"/>
          <exon e_start="124098" e_stop="124311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGGACCCCTCTTTCAAGATTTCCCAGATCATACAGTCTAACAAACATATCTTTTTTTTTTTGTCAACTAAGTAGTAATTAATCAGTTCTTGTATTTAAGGTCAAAACTGATTAATTATTGGTATTAATGGATAATTTCCATTCAATATTTCCTTTACAACCGGATGATGATGCGAATTATGATTCCCATCAACAACAGCTCATTTTTCCACATGAAACCTATACCAACCCTTGTAATTTCATATACCAACAAGATCTGGTAAATGATTTTGCTTCTTTTGATTCATTGGAGTTAAGAGACAACAATCTTACATTTAACAACAATACTAACAACAATCAGAAAGGGAAATCATGTGGCGTTGAGGATAAGAAGAAACACAAGAAAGTGATGCATAGAGAAATTGAAAGGCAAAGAAGACAAGAAATGTCTACTCTTTATGCTTCTCTTCGTCAACAACTTCCTCTTGAAAATATTAAGGTTTGAAAAATTCATCATCCCTTTTCTTTCTCTTTCCATTTTCCCAAACTTTAATTATCTCAGATCATCCCATTTACCACTTATATATCAGTGTATTTTAACATGTTGTAACAAGTAATTTGACGCGTTCCTAAATGTTTGAAATCTTTAAGGGGAAGCGTTCCACATCAGATCACATACTTGAGGCAGCGAATTACATAGAACAACTACAAAAGAATGTTAAGAATTTGGAAGAAAAGAGAGAAAAGTTGATGAAAGATTCAACTGGTTTAAGCAATGTTGATGGCATTAACAAAAGTGGAAGATCAACATCTAGACACTGCTCCCCACCTGCTATTGTGACAGTGAAAGAATGCTTGGATGGGA</genome_strand>
        <mrna_strand>TTAAGGACCCCTCTTTCAAGATTTCCCAGATCATACAGTCTAACAAACATATC-TTTTTTTTTTGTCAACTAAGTAGTAATTAATCAGTTCTTGTATTTAAGGTCAAAACTGATTAATTATTGGTATTAATGGATAATTTCCATTCAATATTTCCTTTACAACCGGATGATGATGCGAATTATGATTCCCATCAACAACAGCTCATTTTTCCACATGAAACCTATACCAACCCTTGTAATTTCATATACCAACAAGATCTGGTAAATGATTTTGCTTCTTTTGATTCATTGGAGTTAAGAGACAACAATCTTACATTTAACAACAATACTAACAACAATCAGAAAGGGAAATCATGTGGCGTTGAGGATAAGAAGAAACACAAGAAAGTGATGCATAGAGAAATTGAAAGGCAAAGAAGACAAGAAATGTCTACTCTTTATGCTTCTCTTCGTCAACAACTTCCTCTTGAAAATATTAAG........................................................................................................................................................GGGAAGCGTTCCACATCAGATCACATACTTGAGGCAGCGAATTACATAGAACAACTACAAAAGAATGTTAAGAATTTGGAAGAAAAGAGAGAAAAGTTGATGAAAGATTCAACTGGTTTAAGCAATGTTGATGGCATTAACAAAAGTGGAAGATCAACATCTAGACACTGCTCCCCACCTGCTATTGTGACAGTGAAAGAATGCTTGGATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>15</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9866" PGL_stop="10280"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9866" e_stop="10280"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="9866" e_stop="10280" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9866" stop="10280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346766" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCAATAAGTAATCCACTCTTTGTGTCAACTGCCCCGACTAACAGCATCCCGCAGCCAACGATGGTGCCCAAATCCAACAGTGATCCTCCGCCCAAAGTTCGGCGTGAGCAGAGTTACACTCTTGAAGAGACCATTAAAATTCCAAGTTCTCATCCCCACATTAATCAATATAGTTCCCCTGTTGAAATTGAGAGGATGGTTAAGAATGAGGAACATGAAGAAATGACTAAGAAAATGAAGAGTTTGGAACAGAGTATAAGAGATATGCAAGGACTAGGAGGCCACAAAGGCATCTCATTCAGTGACTTGTGTATGTTTCCTCACGTCCATTTACCTGCTGGTTTTAAAACTCCAAAGTTTGAAAAATATGATGGTCACGGAGACCCCATAGCTCATCTAAAGAGATATTGCAAC</gDNA_template>
            <first_frame> C  N  K  *  S  T  L  C  V  N  C  P  D  *  Q  H  P  A  A  N  D  G  A  Q  I  Q  Q  *  S  S  A  Q  S  S  A  *  A  E  L  H  S  *  R  D  H  *  N  S  K  F  S  S  P  H  *  S  I  *  F  P  C  *  N  *  E  D  G  *  E  *  G  T  *  R  N  D  *  E  N  E  E  F  G  T  E  Y  K  R  Y  A  R  T  R  R  P  Q  R  H  L  I  Q  *  L  V  Y  V  S  S  R  P  F  T  C  W  F  *  N  S  K  V  *  K  I  *  W  S  R  R  P  H  S  S  S  K  E  I  L  Q  </first_frame>
            <second_frame>  A  I  S  N  P  L  F  V  S  T  A  P  T  N  S  I  P  Q  P  T  M  V  P  K  S  N  S  D  P  P  P  K  V  R  R  E  Q  S  Y  T  L  E  E  T  I  K  I  P  S  S  H  P  H  I  N  Q  Y  S  S  P  V  E  I  E  R  M  V  K  N  E  E  H  E  E  M  T  K  K  M  K  S  L  E  Q  S  I  R  D  M  Q  G  L  G  G  H  K  G  I  S  F  S  D  L  C  M  F  P  H  V  H  L  P  A  G  F  K  T  P  K  F  E  K  Y  D  G  H  G  D  P  I  A  H  L  K  R  Y  C  N </second_frame>
            <third_frame>   Q  *  V  I  H  S  L  C  Q  L  P  R  L  T  A  S  R  S  Q  R  W  C  P  N  P  T  V  I  L  R  P  K  F  G  V  S  R  V  T  L  L  K  R  P  L  K  F  Q  V  L  I  P  T  L  I  N  I  V  P  L  L  K  L  R  G  W  L  R  M  R  N  M  K  K  *  L  R  K  *  R  V  W  N  R  V  *  E  I  C  K  D  *  E  A  T  K  A  S  H  S  V  T  C  V  C  F  L  T  S  I  Y  L  L  V  L  K  L  Q  S  L  K  N  M  M  V  T  E  T  P  *  L  I  *  R  D  I  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0271L05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9867" stop="10280"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AISNPLFVSTAPTNSIPQPTMVPKSNSDPPPKVRREQSYTLEETIKIPSSHPHINQYSSPVEIERMVKNEEHEEMTKKMKSLEQSIRDMQGLGGHKGISFSDLCMFPHVHLPAGFKTPKFEKYDGHGDPIAHLKRYCN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="10493" PGL_stop="10936"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10493" e_stop="10936"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="10493" e_stop="10936" e_length="444"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10493" stop="10936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342831" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAAATTTTCGTGAATATGCTATCAGATGGAGGGAACAAGCTGCTAGGGTTAAACCACCGATGAAGGAGTCAGAGATGATTGATGTTTTTCTCCAGGCGCAAGAACCTGATTACTTTCACTATCTGCTTTCTGCCGTAGGGAAAACATTCGCTGAAGTTATTAAGGTGGGGGAAATGGTGGAAAATGGCATCAAGTCTGGAAAGATTGTAAGTCAGGCTGCCCTAAAAGCCACAACACAAGTGCTTCAAAATGGTTCTGGAAATATTGGAGGGAAGAAGAGAAGGGAGGATGTGGCCACTATTGTATCAGCGCCTAGGACTCATGTTCTAGGTAATTCCCCACAACACTATTTTCCTTCCCAAGCTCCACAATATTCTATGCCATACACTCCATATCATGTTTTTAATGCACAACCAATTGCACCCCCTTCTTATCCACAATG</gDNA_template>
            <first_frame> G  K  F  S  *  I  C  Y  Q  M  E  G  T  S  C  *  G  *  T  T  D  E  G  V  R  D  D  *  C  F  S  P  G  A  R  T  *  L  L  S  L  S  A  F  C  R  R  E  N  I  R  *  S  Y  *  G  G  G  N  G  G  K  W  H  Q  V  W  K  D  C  K  S  G  C  P  K  S  H  N  T  S  A  S  K  W  F  W  K  Y  W  R  E  E  E  K  G  G  C  G  H  Y  C  I  S  A  *  D  S  C  S  R  *  F  P  T  T  L  F  S  F  P  S  S  T  I  F  Y  A  I  H  S  I  S  C  F  *  C  T  T  N  C  T  P  F  L  S  T  M </first_frame>
            <second_frame>  E  N  F  R  E  Y  A  I  R  W  R  E  Q  A  A  R  V  K  P  P  M  K  E  S  E  M  I  D  V  F  L  Q  A  Q  E  P  D  Y  F  H  Y  L  L  S  A  V  G  K  T  F  A  E  V  I  K  V  G  E  M  V  E  N  G  I  K  S  G  K  I  V  S  Q  A  A  L  K  A  T  T  Q  V  L  Q  N  G  S  G  N  I  G  G  K  K  R  R  E  D  V  A  T  I  V  S  A  P  R  T  H  V  L  G  N  S  P  Q  H  Y  F  P  S  Q  A  P  Q  Y  S  M  P  Y  T  P  Y  H  V  F  N  A  Q  P  I  A  P  P  S  Y  P  Q   </second_frame>
            <third_frame>   K  I  F  V  N  M  L  S  D  G  G  N  K  L  L  G  L  N  H  R  *  R  S  Q  R  *  L  M  F  F  S  R  R  K  N  L  I  T  F  T  I  C  F  L  P  *  G  K  H  S  L  K  L  L  R  W  G  K  W  W  K  M  A  S  S  L  E  R  L  *  V  R  L  P  *  K  P  Q  H  K  C  F  K  M  V  L  E  I  L  E  G  R  R  E  G  R  M  W  P  L  L  Y  Q  R  L  G  L  M  F  *  V  I  P  H  N  T  I  F  L  P  K  L  H  N  I  L  C  H  T  L  H  I  M  F  L  M  H  N  Q  L  H  P  L  L  I  H  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0271L05.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10494" stop="10934"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENFREYAIRWREQAARVKPPMKESEMIDVFLQAQEPDYFHYLLSAVGKTFAEVIKVGEMVENGIKSGKIVSQAALKATTQVLQNGSGNIGGKKRREDVATIVSAPRTHVLGNSPQHYFPSQAPQYSMPYTPYHVFNAQPIAPPSYPQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="25463" PGL_stop="25032"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25463" e_stop="25032"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="25463" e_stop="25032" e_length="432"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25463" stop="25032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344186" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAAAGTACTCTGACTGGAATTCAGAGTAGTACCATGTACCTCATCACACTTTTCCACTTCATCAGCCTCTTCAGGTAGACTATGATTTTGATCATCAAAGTCATTTTTCAATTGTTGTTCTGCGTCAGCTTCACTTCCTTCAATTTTCTGTGATTTGAACAGTTTGATCACATCATCTTCATCATTTGATCCAGTATTTTTCAAGCTTCCATCTTCATCAAATACAACATTAGTGGTTTTTTCAATGCATTGAGTTCTTTTGTTGAATATTCTGTAAGCCTTACTCGATGAAGAATATCCAACAAACACTCCTTCATCACTCCTAGGATCAAATTTTCCCAGATTATCCTTTCCATTGTTTAGCACAAAACACCTGCATCCAAATGCTCTAAGATAGCTCCGCATAGGCTTTCTGTTGTTGAGCAGCTCA</gDNA_template>
            <first_frame> F  K  V  L  *  L  E  F  R  V  V  P  C  T  S  S  H  F  S  T  S  S  A  S  S  G  R  L  *  F  *  S  S  K  S  F  F  N  C  C  S  A  S  A  S  L  P  S  I  F  C  D  L  N  S  L  I  T  S  S  S  S  F  D  P  V  F  F  K  L  P  S  S  S  N  T  T  L  V  V  F  S  M  H  *  V  L  L  L  N  I  L  *  A  L  L  D  E  E  Y  P  T  N  T  P  S  S  L  L  G  S  N  F  P  R  L  S  F  P  L  F  S  T  K  H  L  H  P  N  A  L  R  *  L  R  I  G  F  L  L  L  S  S  S </first_frame>
            <second_frame>  L  K  Y  S  D  W  N  S  E  *  Y  H  V  P  H  H  T  F  P  L  H  Q  P  L  Q  V  D  Y  D  F  D  H  Q  S  H  F  S  I  V  V  L  R  Q  L  H  F  L  Q  F  S  V  I  *  T  V  *  S  H  H  L  H  H  L  I  Q  Y  F  S  S  F  H  L  H  Q  I  Q  H  *  W  F  F  Q  C  I  E  F  F  C  *  I  F  C  K  P  Y  S  M  K  N  I  Q  Q  T  L  L  H  H  S  *  D  Q  I  F  P  D  Y  P  F  H  C  L  A  Q  N  T  C  I  Q  M  L  *  D  S  S  A  *  A  F  C  C  *  A  A   </second_frame>
            <third_frame>   *  S  T  L  T  G  I  Q  S  S  T  M  Y  L  I  T  L  F  H  F  I  S  L  F  R  *  T  M  I  L  I  I  K  V  I  F  Q  L  L  F  C  V  S  F  T  S  F  N  F  L  *  F  E  Q  F  D  H  I  I  F  I  I  *  S  S  I  F  Q  A  S  I  F  I  K  Y  N  I  S  G  F  F  N  A  L  S  S  F  V  E  Y  S  V  S  L  T  R  *  R  I  S  N  K  H  S  F  I  T  P  R  I  K  F  S  Q  I  I  L  S  I  V  *  H  K  T  P  A  S  K  C  S  K  I  A  P  H  R  L  S  V  V  E  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0271L05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="38687" PGL_stop="37470"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38687" e_stop="37470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="38687" e_stop="37470" e_length="1218"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38687" stop="37470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320365" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTCAATGTTTTGGCCTTAATTTCACAGTGTTGTTCGTAGTTAAGCAGTATGGTAGTGGCCTTCGTTTTGTTTCACTTTGTTTCATGCTACTTGGAGTTGATGAATCTTGTCATTTACATTCAGCCTGGATGTGAGTTGTTTTGTTTGTAATCTTCAATGAGAAAACATATTCTTGCCTTCCTTGAATATACTGTTTTTCGTGAATTAATCGAAATGAAGACTTTGCCCCTATGCAAGCAGAATGTGGGTTTTGTTCTCCTCTGTTTTATTTGCGTAATTTAAGTTTGCCATTGTTCATTTAGACATTCAGCATTTTAAGGGTTTAGGATAGTTTAGCTTGCCATGATTGCCGCTGTGTTTATTTTTGGACATGAGGGTTCATAAGTGCACATCCATATTGCTGTTAATGCATGCTGTTTTGCTTTTCTTTTTTATGAGATTTTGTAAGCTCCTCGCTTAGCTCATACGAGTTTTTTTTTCTTTTGAAATCGCTGTTCCAATTTAATTCAAATCCTCAAATGGGTGTACTTTTCTTTTTTTTATTTCTCTGTTTTGCTCAAGATTCGTTTGATTATTTTATCGCTTCATGTGCTAATCTATTCTCTTTTTATTGCATGTAAAACTATTCTCGAGTCCTCATGGACCTCACTCCAATTCCTTGCACCTTCTCGTTGAGCCATAAAGGCTCAAAACACCTTTCTCGAGTCAGCCAACCTCCTGAAAGTATGTACAGGTCGGAGAAAAAAAAACCCAGCAGAAACTGCTTGAAAAAATTGTTGCAGAGATTTGAAGAAGATGTATACAGCAGTATACATATTTTATACATTGTATACACTGATATACAGGTTGAAGGCGTACAAGCAGATCCAAATTCGAAATCTGGGATTGTAGCAGTGAACATATGCTTTTAAAAGGGAACTTTCAACTTTTGAAAGTTGAAAAACAAGCTGATATACAGCCTGTATACACTGATATACAGAAACATTATACCTTAAATAGGTGTAAAAAAATATGAATGGCAGCAGGCGTGCGAAAATTCGAACTCCATGAAGATCGAAGGAGCTTGAGGAAGGCGTACTAGAAGATTTTTATTTATTTATTAAGTTGTATTTACTTTGGGCATAAGCCCTTGTCATTTTTGCTTTCCTTGTATTCATTCTTGTATGTTTAGACTAGGACAGGTACGAAAGAAAGAAATGGGTTAAAAACCCAAAAGC</gDNA_template>
            <first_frame> S  Q  C  F  G  L  N  F  T  V  L  F  V  V  K  Q  Y  G  S  G  L  R  F  V  S  L  C  F  M  L  L  G  V  D  E  S  C  H  L  H  S  A  W  M  *  V  V  L  F  V  I  F  N  E  K  T  Y  S  C  L  P  *  I  Y  C  F  S  *  I  N  R  N  E  D  F  A  P  M  Q  A  E  C  G  F  C  S  P  L  F  Y  L  R  N  L  S  L  P  L  F  I  *  T  F  S  I  L  R  V  *  D  S  L  A  C  H  D  C  R  C  V  Y  F  W  T  *  G  F  I  S  A  H  P  Y  C  C  *  C  M  L  F  C  F  S  F  L  *  D  F  V  S  S  S  L  S  S  Y  E  F  F  F  L  L  K  S  L  F  Q  F  N  S  N  P  Q  M  G  V  L  F  F  F  L  F  L  C  F  A  Q  D  S  F  D  Y  F  I  A  S  C  A  N  L  F  S  F  Y  C  M  *  N  Y  S  R  V  L  M  D  L  T  P  I  P  C  T  F  S  L  S  H  K  G  S  K  H  L  S  R  V  S  Q  P  P  E  S  M  Y  R  S  E  K  K  K  P  S  R  N  C  L  K  K  L  L  Q  R  F  E  E  D  V  Y  S  S  I  H  I  L  Y  I  V  Y  T  D  I  Q  V  E  G  V  Q  A  D  P  N  S  K  S  G  I  V  A  V  N  I  C  F  *  K  G  T  F  N  F  *  K  L  K  N  K  L  I  Y  S  L  Y  T  L  I  Y  R  N  I  I  P  *  I  G  V  K  K  Y  E  W  Q  Q  A  C  E  N  S  N  S  M  K  I  E  G  A  *  G  R  R  T  R  R  F  L  F  I  Y  *  V  V  F  T  L  G  I  S  P  C  H  F  C  F  P  C  I  H  S  C  M  F  R  L  G  Q  V  R  K  K  E  M  G  *  K  P  K  S </first_frame>
            <second_frame>  V  N  V  L  A  L  I  S  Q  C  C  S  *  L  S  S  M  V  V  A  F  V  L  F  H  F  V  S  C  Y  L  E  L  M  N  L  V  I  Y  I  Q  P  G  C  E  L  F  C  L  *  S  S  M  R  K  H  I  L  A  F  L  E  Y  T  V  F  R  E  L  I  E  M  K  T  L  P  L  C  K  Q  N  V  G  F  V  L  L  C  F  I  C  V  I  *  V  C  H  C  S  F  R  H  S  A  F  *  G  F  R  I  V  *  L  A  M  I  A  A  V  F  I  F  G  H  E  G  S  *  V  H  I  H  I  A  V  N  A  C  C  F  A  F  L  F  Y  E  I  L  *  A  P  R  L  A  H  T  S  F  F  F  F  *  N  R  C  S  N  L  I  Q  I  L  K  W  V  Y  F  S  F  F  Y  F  S  V  L  L  K  I  R  L  I  I  L  S  L  H  V  L  I  Y  S  L  F  I  A  C  K  T  I  L  E  S  S  W  T  S  L  Q  F  L  A  P  S  R  *  A  I  K  A  Q  N  T  F  L  E  S  A  N  L  L  K  V  C  T  G  R  R  K  K  N  P  A  E  T  A  *  K  N  C  C  R  D  L  K  K  M  Y  T  A  V  Y  I  F  Y  T  L  Y  T  L  I  Y  R  L  K  A  Y  K  Q  I  Q  I  R  N  L  G  L  *  Q  *  T  Y  A  F  K  R  E  L  S  T  F  E  S  *  K  T  S  *  Y  T  A  C  I  H  *  Y  T  E  T  L  Y  L  K  *  V  *  K  N  M  N  G  S  R  R  A  K  I  R  T  P  *  R  S  K  E  L  E  E  G  V  L  E  D  F  Y  L  F  I  K  L  Y  L  L  W  A  *  A  L  V  I  F  A  F  L  V  F  I  L  V  C  L  D  *  D  R  Y  E  R  K  K  W  V  K  N  P  K   </second_frame>
            <third_frame>   S  M  F  W  P  *  F  H  S  V  V  R  S  *  A  V  W  *  W  P  S  F  C  F  T  L  F  H  A  T  W  S  *  *  I  L  S  F  T  F  S  L  D  V  S  C  F  V  C  N  L  Q  *  E  N  I  F  L  P  S  L  N  I  L  F  F  V  N  *  S  K  *  R  L  C  P  Y  A  S  R  M  W  V  L  F  S  S  V  L  F  A  *  F  K  F  A  I  V  H  L  D  I  Q  H  F  K  G  L  G  *  F  S  L  P  *  L  P  L  C  L  F  L  D  M  R  V  H  K  C  T  S  I  L  L  L  M  H  A  V  L  L  F  F  F  M  R  F  C  K  L  L  A  *  L  I  R  V  F  F  S  F  E  I  A  V  P  I  *  F  K  S  S  N  G  C  T  F  L  F  F  I  S  L  F  C  S  R  F  V  *  L  F  Y  R  F  M  C  *  S  I  L  F  L  L  H  V  K  L  F  S  S  P  H  G  P  H  S  N  S  L  H  L  L  V  E  P  *  R  L  K  T  P  F  S  S  Q  P  T  S  *  K  Y  V  Q  V  G  E  K  K  T  Q  Q  K  L  L  E  K  I  V  A  E  I  *  R  R  C  I  Q  Q  Y  T  Y  F  I  H  C  I  H  *  Y  T  G  *  R  R  T  S  R  S  K  F  E  I  W  D  C  S  S  E  H  M  L  L  K  G  N  F  Q  L  L  K  V  E  K  Q  A  D  I  Q  P  V  Y  T  D  I  Q  K  H  Y  T  L  N  R  C  K  K  I  *  M  A  A  G  V  R  K  F  E  L  H  E  D  R  R  S  L  R  K  A  Y  *  K  I  F  I  Y  L  L  S  C  I  Y  F  G  H  K  P  L  S  F  L  L  S  L  Y  S  F  L  Y  V  *  T  R  T  G  T  K  E  R  N  G  L  K  T  Q  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0271L05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38066" stop="37776"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYSRVLMDLTPIPCTFSLSHKGSKHLSRVSQPPESMYRSEKKKPSRNCLKKLLQRFEEDVYSSIHILYIVYTDIQVEGVQADPNSKSGIVAVNICF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="63908" PGL_stop="64642"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63908" e_stop="64642"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="63908" e_stop="64642" e_length="735"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63908" stop="64642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334737" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGGGTCTTCGTTCTAAAACACTTCAACTCTTGAAATCTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCATAGACACGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAAACTTTCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACCTTCACAAGCACGATGAACCGTCACAAGCACGACAGACCGTCACAAGCTCCGAAGGTGGTCTCTTCTGCATTTCTTTGCTTAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAATGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAAGTTAAATTCGTTGTTTTTCCTCAAGCAACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGTAATCATTTGGCTATCAATCCCGATTAATCTAATCAAATCTAAGCATGCTATCACTATTAGGCTTGAATTTTGTGGGATCAGAACATGATACAGACTCACCACGCACTAACACTTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTGGTATTGCAACTAGTGTCCTCACTTTAAAACAAAATCCTCCTTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTAC</gDNA_template>
            <first_frame> R  G  S  S  F  *  N  T  S  T  L  E  I  W  V  L  G  S  L  L  *  T  S  R  R  T  C  R  T  D  R  H  R  H  D  G  P  S  Q  A  S  *  S  H  T  W  S  N  F  P  I  F  L  Q  Q  L  H  Y  A  A  T  Y  G  P  S  Q  A  R  *  T  V  T  S  T  T  D  R  H  K  L  R  R  W  S  L  L  H  F  F  A  *  N  L  R  I  Q  L  W  T  D  F  L  Q  N  K  E  K  L  I  *  K  L  A  Q  K  C  F  W  T  H  *  T  *  G  K  S  I  N  N  T  V  K  P  R  Y  I  N  T  L  K  L  N  S  L  F  F  L  K  Q  R  T  M  T  H  Y  T  I  F  V  Q  *  Y  P  C  F  I  L  C  N  H  L  A  I  N  P  D  *  S  N  Q  I  *  A  C  Y  H  Y  *  A  *  I  L  W  D  Q  N  M  I  Q  T  H  H  A  L  T  L  I  L  F  N  F  S  P  R  C  *  Q  F  W  Y  C  N  *  C  P  H  F  K  T  K  S  S  F  F  T  Q  *  F  Q  F  E  Y  K  D  Y </first_frame>
            <second_frame>  E  G  L  R  S  K  T  L  Q  L  L  K  S  G  Y  W  D  H  F  S  E  L  H  D  E  P  A  G  R  T  V  I  D  T  T  D  R  H  K  L  R  N  P  T  L  G  Q  T  F  P  S  S  F  S  S  C  T  T  L  P  P  T  D  L  H  K  H  D  E  P  S  Q  A  R  Q  T  V  T  S  S  E  G  G  L  F  C  I  S  L  L  K  I  S  A  F  S  F  G  Q  I  S  C  K  T  K  R  N  L  Y  K  N  *  H  K  N  A  F  G  H  T  K  L  K  E  K  V  L  I  I  P  *  N  H  G  I  S  T  P  S  S  *  I  R  C  F  S  S  S  N  A  L  *  L  T  T  Q  S  L  Y  N  S  I  H  V  L  S  F  V  I  I  W  L  S  I  P  I  N  L  I  K  S  K  H  A  I  T  I  R  L  E  F  C  G  I  R  T  *  Y  R  L  T  T  H  *  H  L  S  S  S  I  S  H  R  G  A  N  N  S  G  I  A  T  S  V  L  T  L  K  Q  N  P  P  F  S  H  N  D  F  S  L  S  I  R  I   </second_frame>
            <third_frame>   R  V  F  V  L  K  H  F  N  S  *  N  L  G  T  G  I  T  S  L  N  F  T  T  N  L  Q  D  G  P  S  *  T  R  R  T  V  T  S  F  V  I  P  H  L  V  K  L  S  H  L  P  S  A  A  A  L  R  C  H  L  R  T  F  T  S  T  M  N  R  H  K  H  D  R  P  S  Q  A  P  K  V  V  S  S  A  F  L  C  L  K  S  P  H  S  A  L  D  R  F  P  A  K  Q  R  E  T  Y  I  K  I  S  T  K  M  L  L  D  T  L  N  L  R  K  K  Y  *  *  Y  R  E  T  T  V  Y  Q  H  P  Q  V  K  F  V  V  F  P  Q  A  T  H  Y  D  S  L  H  N  L  C  T  I  V  S  M  F  Y  P  L  *  S  F  G  Y  Q  S  R  L  I  *  S  N  L  S  M  L  S  L  L  G  L  N  F  V  G  S  E  H  D  T  D  S  P  R  T  N  T  Y  P  L  Q  F  L  T  E  V  L  T  I  L  V  L  Q  L  V  S  S  L  *  N  K  I  L  L  F  H  T  M  I  S  V  *  V  *  G  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0271L05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63909" stop="64244"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGLRSKTLQLLKSGYWDHFSELHDEPAGRTVIDTTDRHKLRNPTLGQTFPSSFSSCTTLPPTDLHKHDEPSQARQTVTSSEGGLFCISLLKISAFSFGQISCKTKRNLYKN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0271L05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64006" stop="64290"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRRTVTSFVIPHLVKLSHLPSAAALRCHLRTFTSTMNRHKHDRPSQAPKVVSSAFLCLKSPHSALDRFPAKQRETYIKISTKMLLDTLNLRKKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="75761" PGL_stop="74878"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75761" e_stop="74878"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="75761" e_stop="74878" e_length="884"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75761" stop="74878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331257" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGCCAGCCCCTCTCCCTCTCTCTCTCCGGCGACCCCTCTTCTTTTTCCCCCGGCCAGCCAGCAGCTGCTGGCCGCCTTGTTCCCTTCTCTTTCCCTTTATCTCATTCTCGCTTCTCTCTTCCTTCCTCTTTCCCCCTCTCCCTCTTCTTCTCTATTCCTCTTCCCGTTCTCTCCCTCTCTACTCGCCCTTCTCTCCAGCCGGCGAAACAAGCAGGAAGGCGACGACAACCAGCAGCTCCGGTCAGGCGAGTACACCGGCAACAGCCAGGCGCCGCCGTCTCCTTCTCCCTCTTTCCCTCTTCTTCTCCTCCGTCTTTTTTCCTCTCCCTTTTGGAGGACTTCCAGGCAGCAGCGACCAGTGCACCTCTAGCAATGGTGCAGTTTCTCCAGCAGCAGCAGCGAGAACAAAACCACCAGGCAGCAAAGATGCAGCAACCAGTGGACACAGCAGCCGACAATGCTGTTCCGACCGGCAAAGTCAGCAGCAGCTGCACCAACCAGCGCAGCTCCGCCCCAACCTTCAGCAATAACAACAACCGATATATAAAAACGAGGCATTAGGATAAGGACAGATCTTTATAGATCTGTCCCAAGTATGAATTTTTGTTCTCTAGTCTTAAATCCTTATTGTATGAGTTATTTTTCCTCAAAATCTCATCTTCTTCTCCAGCCTTAATTCATGTGAAATTCTTAACGCTTATTTTATCATATGATTAGTTTGTTAGAATTATGTGTCCTTTCCTTGCTCTCCTTTGTTTCTTTTGAAAATGAAGCACCCATGGTATTTCTCTGTCTCGGAATATATTTGTTCATACTCAATGTGTAATTGACTGTATACGACTGTGTCTAACCATATATGGCTGGTATATATTAATTTATTTGT</gDNA_template>
            <first_frame> P  P  A  P  L  P  L  S  L  R  R  P  L  F  F  F  P  R  P  A  S  S  C  W  P  P  C  S  L  L  F  P  F  I  S  F  S  L  L  S  S  F  L  F  P  P  L  P  L  L  L  Y  S  S  S  R  S  L  P  L  Y  S  P  F  S  P  A  G  E  T  S  R  K  A  T  T  T  S  S  S  G  Q  A  S  T  P  A  T  A  R  R  R  R  L  L  L  P  L  S  L  F  F  S  S  V  F  F  P  L  P  F  G  G  L  P  G  S  S  D  Q  C  T  S  S  N  G  A  V  S  P  A  A  A  A  R  T  K  P  P  G  S  K  D  A  A  T  S  G  H  S  S  R  Q  C  C  S  D  R  Q  S  Q  Q  Q  L  H  Q  P  A  Q  L  R  P  N  L  Q  Q  *  Q  Q  P  I  Y  K  N  E  A  L  G  *  G  Q  I  F  I  D  L  S  Q  V  *  I  F  V  L  *  S  *  I  L  I  V  *  V  I  F  P  Q  N  L  I  F  F  S  S  L  N  S  C  E  I  L  N  A  Y  F  I  I  *  L  V  C  *  N  Y  V  S  F  P  C  S  P  L  F  L  L  K  M  K  H  P  W  Y  F  S  V  S  E  Y  I  C  S  Y  S  M  C  N  *  L  Y  T  T  V  S  N  H  I  W  L  V  Y  I  N  L  F   </first_frame>
            <second_frame>  R  Q  P  L  S  L  S  L  S  G  D  P  S  S  F  S  P  G  Q  P  A  A  A  G  R  L  V  P  F  S  F  P  L  S  H  S  R  F  S  L  P  S  S  F  P  L  S  L  F  F  S  I  P  L  P  V  L  S  L  S  T  R  P  S  L  Q  P  A  K  Q  A  G  R  R  R  Q  P  A  A  P  V  R  R  V  H  R  Q  Q  P  G  A  A  V  S  F  S  L  F  P  S  S  S  P  P  S  F  F  L  S  L  L  E  D  F  Q  A  A  A  T  S  A  P  L  A  M  V  Q  F  L  Q  Q  Q  Q  R  E  Q  N  H  Q  A  A  K  M  Q  Q  P  V  D  T  A  A  D  N  A  V  P  T  G  K  V  S  S  S  C  T  N  Q  R  S  S  A  P  T  F  S  N  N  N  N  R  Y  I  K  T  R  H  *  D  K  D  R  S  L  *  I  C  P  K  Y  E  F  L  F  S  S  L  K  S  L  L  Y  E  L  F  F  L  K  I  S  S  S  S  P  A  L  I  H  V  K  F  L  T  L  I  L  S  Y  D  *  F  V  R  I  M  C  P  F  L  A  L  L  C  F  F  *  K  *  S  T  H  G  I  S  L  S  R  N  I  F  V  H  T  Q  C  V  I  D  C  I  R  L  C  L  T  I  Y  G  W  Y  I  L  I  Y  L  </second_frame>
            <third_frame>   A  S  P  S  P  S  L  S  P  A  T  P  L  L  F  P  P  A  S  Q  Q  L  L  A  A  L  F  P  S  L  S  L  Y  L  I  L  A  S  L  F  L  P  L  S  P  S  P  S  S  S  L  F  L  F  P  F  S  P  S  L  L  A  L  L  S  S  R  R  N  K  Q  E  G  D  D  N  Q  Q  L  R  S  G  E  Y  T  G  N  S  Q  A  P  P  S  P  S  P  S  F  P  L  L  L  L  R  L  F  S  S  P  F  W  R  T  S  R  Q  Q  R  P  V  H  L  *  Q  W  C  S  F  S  S  S  S  S  E  N  K  T  T  R  Q  Q  R  C  S  N  Q  W  T  Q  Q  P  T  M  L  F  R  P  A  K  S  A  A  A  A  P  T  S  A  A  P  P  Q  P  S  A  I  T  T  T  D  I  *  K  R  G  I  R  I  R  T  D  L  Y  R  S  V  P  S  M  N  F  C  S  L  V  L  N  P  Y  C  M  S  Y  F  S  S  K  S  H  L  L  L  Q  P  *  F  M  *  N  S  *  R  L  F  Y  H  M  I  S  L  L  E  L  C  V  L  S  L  L  S  F  V  S  F  E  N  E  A  P  M  V  F  L  C  L  G  I  Y  L  F  I  L  N  V  *  L  T  V  Y  D  C  V  *  P  Y  M  A  G  I  Y  *  F  I  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0271L05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75760" stop="75200"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQPLSLSLSGDPSSFSPGQPAAAGRLVPFSFPLSHSRFSLPSSFPLSLFFSIPLPVLSLSTRPSLQPAKQAGRRRQPAAPVRRVHRQQPGAAVSFSLFPSSSPPSFFLSLLEDFQAAATSAPLAMVQFLQQQQREQNHQAAKMQQPVDTAADNAVPTGKVSSSCTNQRSSAPTFSNNNNRYIKTRH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0271L05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75761" stop="75231"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PPAPLPLSLRRPLFFFPRPASSCWPPCSLLFPFISFSLLSSFLFPPLPLLLYSSSRSLPLYSPFSPAGETSRKATTTSSSGQASTPATARRRRLLLPLSLFFSSVFFPLPFGGLPGSSDQCTSSNGAVSPAAAARTKPPGSKDAATSGHSSRQCCSDRQSQQQLHQPAQLRPNLQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="97083" PGL_stop="103123"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97083" e_stop="97627"/>
            <exon e_start="98942" e_stop="99076"/>
            <exon e_start="99174" e_stop="99314"/>
            <exon e_start="99395" e_stop="99506"/>
            <exon e_start="99711" e_stop="99781"/>
            <exon e_start="100005" e_stop="100159"/>
            <exon e_start="100252" e_stop="100363"/>
            <exon e_start="100592" e_stop="100693"/>
            <exon e_start="100784" e_stop="100844"/>
            <exon e_start="100932" e_stop="101100"/>
            <exon e_start="101173" e_stop="101269"/>
            <exon e_start="101354" e_stop="101448"/>
            <exon e_start="102252" e_stop="102385"/>
            <exon e_start="102599" e_stop="103123"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.726" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="0.994"/>
          <exon-intron don_prob="0.995" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.997" e_score="0.993"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97083" e_stop="97627" e_length="545"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="97628" i_stop="98941" i_length="1314"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98942" e_stop="99076" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="99077" i_stop="99173" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99174" e_stop="99314" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.961">
            <gDNA_intron_boundary i_start="99315" i_stop="99394" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="99395" e_stop="99506" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="0.926" acc_prob="0.991">
            <gDNA_intron_boundary i_start="99507" i_stop="99710" i_length="204"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="99711" e_stop="99781" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.961" acc_prob="0.997">
            <gDNA_intron_boundary i_start="99782" i_stop="100004" i_length="223"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="100005" e_stop="100159" e_length="155"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.726">
            <gDNA_intron_boundary i_start="100160" i_stop="100251" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="100252" e_stop="100363" e_length="112"/>
          </exon>
          <intron i_serial="7" don_prob="0.883" acc_prob="0.917">
            <gDNA_intron_boundary i_start="100364" i_stop="100591" i_length="228"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="100592" e_stop="100693" e_length="102"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="100694" i_stop="100783" i_length="90"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="100784" e_stop="100844" e_length="61"/>
          </exon>
          <intron i_serial="9" don_prob="0.913" acc_prob="0.979">
            <gDNA_intron_boundary i_start="100845" i_stop="100931" i_length="87"/>
          </intron>
          <exon e_serial="10" e_score="0.994">
            <gDNA_exon_boundary e_start="100932" e_stop="101100" e_length="169"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="101101" i_stop="101172" i_length="72"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="101173" e_stop="101269" e_length="97"/>
          </exon>
          <intron i_serial="11" don_prob="0.995" acc_prob="0.953">
            <gDNA_intron_boundary i_start="101270" i_stop="101353" i_length="84"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="101354" e_stop="101448" e_length="95"/>
          </exon>
          <intron i_serial="12" don_prob="0.969" acc_prob="0.908">
            <gDNA_intron_boundary i_start="101449" i_stop="102251" i_length="803"/>
          </intron>
          <exon e_serial="13" e_score="0.993">
            <gDNA_exon_boundary e_start="102252" e_stop="102385" e_length="134"/>
          </exon>
          <intron i_serial="13" don_prob="0.967" acc_prob="0.997">
            <gDNA_intron_boundary i_start="102386" i_stop="102598" i_length="213"/>
          </intron>
          <exon e_serial="14" e_score="0.970">
            <gDNA_exon_boundary e_start="102599" e_stop="103123" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97083" stop="97627"/>
              <exon start="98942" stop="99076"/>
              <exon start="99174" stop="99314"/>
              <exon start="99395" stop="99501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99444" stop="99506"/>
              <exon start="99711" stop="99781"/>
              <exon start="100005" stop="100159"/>
              <exon start="100252" stop="100363"/>
              <exon start="100592" stop="100693"/>
              <exon start="100784" stop="100844"/>
              <exon start="100932" stop="101100"/>
              <exon start="101173" stop="101269"/>
              <exon start="101354" stop="101448"/>
              <exon start="102252" stop="102385"/>
              <exon start="102599" stop="103123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316970" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTTCTGCGCCTAACTGCAGAATACACCGTTTTCGGCAGGAGAGCAATTCCCCCTACAAACAAAGTCATCATGCCTGCACTTGTTGTAACTGAAGAAACAATGGCCTCCGAGCTATCCAAGAAAAAAATGAAGAAGACACCCAAAACTGATATTGAAACTCCTACTGATAAGAAAACCAAAGAGAAAAAGTCAAAAAAATCCAAGATTGAGTCTGGGTCTGATTCAGAGGACGCTAAAAGGAGTAAAAAGAAAGAGAAAAAGAGAAAAGCTTTGGACTTGGATGGTGAGAAGAGTGATACGAGCTCAGAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGATGTGATTTGGTTGGTCGAGCTCGTACTGGGCAG : GGTAAAACGCTGGCCTTTGTTTTACCCATATTGGAGTCCCTAACGAATGGTCCTACTAAAGCATTACGAAAAACAGGGTATGGGAAGGCTCCTAGTGTTCTGGTGCTTTTACCTACTAGGGAATTGGCACTTCAG : GTGTTTGCTGACTTTGAAGTCTATGGCCGGGCTGTTGGGCTCACTTCATGCTGTTTGTATGGAAATTCTCCTATGGGGGCACAACAGGCTCAACTAAAAAGAGGAGTTGACATTGTAGTGGGTACTCCTGGAAGGGTTAAG : GACCACATTGAAAGGGGAAATATTGATTTCGGGTCTTTGAAGTTCCGTGTTCTTGATGAAGTCGATGAAATGTTAAAAATTGGTTTTGTAGATGATGTCGAATTTATTTTAG : GCAAGGTCGAAGATGCAAGCCTAGTTCAAACAGTTCTTTTCAGTGCCACTTTGCCAGTCTGGGTGAAGCAT : ATTGCTTCTAAGTTTCTGAAACCAGATAAGAAAACGGCTGACCTTGTTGGTAATGAGAAAATGAAGGCCAGTAAAAATGTGAGGCATATTATTATTCCATGCTCTAGTTCTGCAAGACCTCAGCTTATTCCTGATATCATTCGGTGCTACGGCAG : TGGAGGACGTACAATTATTTTTACTGAGACAAGGGCGCTGGCTTCAGAGCTAGCTGGCTTACTGCCTGGGGCAAGTGCTTTGCATGGGGAGATACAACAGAACCAGCGTGAG : GCTACACTTAAAGGATTCAGATCAGGCAAATTCATGACATTAGTGGCCACAAATGTGGCAGCCCGTGGATTGGATATCGATGATGTTCAGTTAATTATCCAG : TGCGAAGCCACTAGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTG : GAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGGTATTTCTGATAG : TGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCT : GGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTC : CTTTGTCTATAGTTTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAG : GCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCTTGTAGTGTTCTTCCATGTTTTACTATATTTTTGGTTAGACACTTGAAAAGTTATTATTTATTTTGTATGGTATTGTTACCTGAAGAAATCATATTCAATTCAAGTTCAATTTACTATATGTTTGGTTACACACTTAAAAAG</gDNA_template>
            <first_frame> C  F  C  A  *  L  Q  N  T  P  F  S  A  G  E  Q  F  P  L  Q  T  K  S  S  C  L  H  L  L  *  L  K  K  Q  W  P  P  S  Y  P  R  K  K  *  R  R  H  P  K  L  I  L  K  L  L  L  I  R  K  P  K  R  K  S  Q  K  N  P  R  L  S  L  G  L  I  Q  R  T  L  K  G  V  K  R  K  R  K  R  E  K  L  W  T  W  M  V  R  R  V  I  R  A  Q  R  Y  A  S  P  *  I  *  R  R  I  K  R  L  N  S  T  T  N  K  *  W  L  R  R  K  S  R  I  L  M  L  C  L  I  L  G  F  Q  S  L  *  K  R  L  *  I  L  R  E  *  K  H  F  F  L  F  K  L  *  L  L  M  I  F  L  M  D  V  I  W  L  V  E  L  V  L  G  R :   V  K  R  W  P  L  F  Y  P  Y  W  S  P  *  R  M  V  L  L  K  H  Y  E  K  Q  G  M  G  R  L  L  V  F  W  C  F  Y  L  L  G  N  W  H  F  R :   C  L  L  T  L  K  S  M  A  G  L  L  G  S  L  H  A  V  C  M  E  I  L  L  W  G  H  N  R  L  N  *  K  E  E  L  T  L  *  W  V  L  L  E  G  L  R :   T  T  L  K  G  E  I  L  I  S  G  L  *  S  S  V  F  L  M  K  S  M  K  C  *  K  L  V  L  *  M  M  S  N  L  F  *  :  A  R  S  K  M  Q  A  *  F  K  Q  F  F  S  V  P  L  C  Q  S  G  *  S  I :   L  L  L  S  F  *  N  Q  I  R  K  R  L  T  L  L  V  M  R  K  *  R  P  V  K  M  *  G  I  L  L  F  H  A  L  V  L  Q  D  L  S  L  F  L  I  S  F  G  A  T  A   : V  E  D  V  Q  L  F  L  L  R  Q  G  R  W  L  Q  S  *  L  A  Y  C  L  G  Q  V  L  C  M  G  R  Y  N  R  T  S  V  R :   L  H  L  K  D  S  D  Q  A  N  S  *  H  *  W  P  Q  M  W  Q  P  V  D  W  I  S  M  M  F  S  *  L  S  S :   A  K  P  L  V  T  W  K  H  T  F  I  D  L  E  G  Q  D  G  L  :  E  R  V  A  L  L  *  C  C  M  I  Q  G  S  Q  T  F  L  E  S  K  K  N  L  V  *  P  L  S  I  C  L  L  L  S  Q  L  M  L  P  R  Q  L  G  K  K  L  L  I  *  L  R  V  F  L  I   : V  S  Y  L  Y  L  R  L  L  Q  R  S  F  *  I  L  L  T  Y  H  Q  Q  N  Y  L  R  K  L  L  P  R  L  L :   A  I  L  R  S  R  L  D  R  F  L  L  L  W  R  T  V  L  L  C  F  S  S  V  G  D  P  S  S  H  L   : P  L  S  I  V  S  *  G  G  S  C  L  R  R  R  L  N  Q  S  M  V  L  L  *  Q  L  M  E  R  G  Q  F  L  M  L  L  L  S  T  W  M  N  F  S  Q  :  A  K  K  L  H  M  G  *  I  *  R  L  W  K  R  C  L  L  C  K  R  E  R  S  Q  E  V  E  D  L  E  V  V  A  V  A  A  A  S  V  T  E  E  A  E  V  A  F  L  E  E  E  G  G  E  V  M  A  T  L  V  A  D  G  K  E  W  R  H  N  F  F  D  S  *  Q  Y  K  S  L  S  K  A  A  F  K  I  L  V  *  *  R  K  C  M  G  L  Q  *  G  F  F  C  I  N  F  T  N  L  Y  R  F  L  L  P  V  P  C  F  I  M  L  F  A  S  *  L  S  C  S  V  L  P  C  F  T  I  F  L  V  R  H  L  K  S  Y  Y  L  F  C  M  V  L  L  P  E  E  I  I  F  N  S  S  S  I  Y  Y  M  F  G  Y  T  L  K  K </first_frame>
            <second_frame>  A  S  A  P  N  C  R  I  H  R  F  R  Q  E  S  N  S  P  Y  K  Q  S  H  H  A  C  T  C  C  N  *  R  N  N  G  L  R  A  I  Q  E  K  N  E  E  D  T  Q  N  *  Y  *  N  S  Y  *  *  E  N  Q  R  E  K  V  K  K  I  Q  D  *  V  W  V  *  F  R  G  R  *  K  E  *  K  E  R  E  K  E  K  S  F  G  L  G  W  *  E  E  *  Y  E  L  R  D  M  R  A  R  R  F  E  E  E  *  K  G  *  I  R  R  R  T  S  D  G  *  E  E  S  R  G  S  *  C  F  V  *  F  *  D  F  K  A  F  K  R  G  F  E  F  *  G  N  R  S  T  F  S  Y  S  S  Y  D  F  *  *  Y  S  *  W  M  *  F  G  W  S  S  S  Y  W  A   : G  *  N  A  G  L  C  F  T  H  I  G  V  P  N  E  W  S  Y  *  S  I  T  K  N  R  V  W  E  G  S  *  C  S  G  A  F  T  Y  *  G  I  G  T  S   : G  V  C  *  L  *  S  L  W  P  G  C  W  A  H  F  M  L  F  V  W  K  F  S  Y  G  G  T  T  G  S  T  K  K  R  S  *  H  C  S  G  Y  S  W  K  G  *   : G  P  H  *  K  G  K  Y  *  F  R  V  F  E  V  P  C  S  *  *  S  R  *  N  V  K  N  W  F  C  R  *  C  R  I  Y  F  R :   Q  G  R  R  C  K  P  S  S  N  S  S  F  Q  C  H  F  A  S  L  G  E  A   : Y  C  F  *  V  S  E  T  R  *  E  N  G  *  P  C  W  *  *  E  N  E  G  Q  *  K  C  E  A  Y  Y  Y  S  M  L  *  F  C  K  T  S  A  Y  S  *  Y  H  S  V  L  R  Q  :  W  R  T  Y  N  Y  F  Y  *  D  K  G  A  G  F  R  A  S  W  L  T  A  W  G  K  C  F  A  W  G  D  T  T  E  P  A  *   : G  Y  T  *  R  I  Q  I  R  Q  I  H  D  I  S  G  H  K  C  G  S  P  W  I  G  Y  R  *  C  S  V  N  Y  P   : V  R  S  H  *  *  R  G  S  I  H  S  S  I  W  K  D  R  T  G  W :   K  E  W  R  C  C  N  A  V  *  S  K  E  V  K  H  F  *  N  R  K  R  I  W  C  D  L  *  A  F  V  C  S  S  A  S  *  C  C  Q  G  S  W  E  R  S  C  *  Y  N  C  G  Y  F  *  *  :  C  H  T  C  I  *  G  C  C  R  G  A  S  E  Y  F  *  P  I  T  S  R  I  T  C  E  S  S  C  Q  G  C   : W  L  F  *  D  Q  D  S  I  A  S  Y  F  Y  G  E  L  C  Y  S  A  S  R  V  W  E  T  H  L  L  T  F  :  L  C  L  *  F  P  E  E  V  L  A  *  G  E  G  *  I  N  Q  W  S  Y  F  D  S  *  W  K  G  G  S  F  *  C  C  C  *  A  L  G  *  I  S  L  R :   P  K  N  C  T  W  G  K  Y  R  G  C  G  S  A  A  S  F  A  R  E  R  E  A  K  R  W  K  I  W  R  W  W  P  W  R  R  L  R  *  Q  K  R  R  R  W  L  F  W  R  K  R  G  E  R  *  W  Q  L  W  S  Q  M  V  R  N  G  D  I  I  F  L  I  A  D  N  T  R  V  C  P  R  L  R  S  K  F  W  Y  S  E  E  N  V  W  D  F  S  K  V  S  S  V  L  I  L  L  I  Y  I  G  F  S  S  L  Y  P  A  S  L  C  F  S  L  V  S  F  L  V  V  F  F  H  V  L  L  Y  F  W  L  D  T  *  K  V  I  I  Y  F  V  W  Y  C  Y  L  K  K  S  Y  S  I  Q  V  Q  F  T  I  C  L  V  T  H  L  K   </second_frame>
            <third_frame>   L  L  R  L  T  A  E  Y  T  V  F  G  R  R  A  I  P  P  T  N  K  V  I  M  P  A  L  V  V  T  E  E  T  M  A  S  E  L  S  K  K  K  M  K  K  T  P  K  T  D  I  E  T  P  T  D  K  K  T  K  E  K  K  S  K  K  S  K  I  E  S  G  S  D  S  E  D  A  K  R  S  K  K  K  E  K  K  R  K  A  L  D  L  D  G  E  K  S  D  T  S  S  E  I  C  E  P  V  D  L  K  K  N  K  K  A  K  F  D  D  E  Q  V  M  V  E  K  K  V  E  D  P  N  A  L  S  N  F  R  I  S  K  P  L  K  E  A  L  N  S  K  G  I  E  A  L  F  P  I  Q  A  M  T  F  D  D  I  L  D  G  C  D  L  V  G  R  A  R  T  G  Q  :  G  K  T  L  A  F  V  L  P  I  L  E  S  L  T  N  G  P  T  K  A  L  R  K  T  G  Y  G  K  A  P  S  V  L  V  L  L  P  T  R  E  L  A  L  Q  :  V  F  A  D  F  E  V  Y  G  R  A  V  G  L  T  S  C  C  L  Y  G  N  S  P  M  G  A  Q  Q  A  Q  L  K  R  G  V  D  I  V  V  G  T  P  G  R  V  K  :  D  H  I  E  R  G  N  I  D  F  G  S  L  K  F  R  V  L  D  E  V  D  E  M  L  K  I  G  F  V  D  D  V  E  F  I  L   : G  K  V  E  D  A  S  L  V  Q  T  V  L  F  S  A  T  L  P  V  W  V  K  H  :  I  A  S  K  F  L  K  P  D  K  K  T  A  D  L  V  G  N  E  K  M  K  A  S  K  N  V  R  H  I  I  I  P  C  S  S  S  A  R  P  Q  L  I  P  D  I  I  R  C  Y  G  S :   G  G  R  T  I  I  F  T  E  T  R  A  L  A  S  E  L  A  G  L  L  P  G  A  S  A  L  H  G  E  I  Q  Q  N  Q  R  E  :  A  T  L  K  G  F  R  S  G  K  F  M  T  L  V  A  T  N  V  A  A  R  G  L  D  I  D  D  V  Q  L  I  I  Q  :  C  E  A  T  S  D  V  E  A  Y  I  H  R  S  G  R  T  G  R  A   : G  K  S  G  V  A  V  M  L  Y  D  P  R  K  S  N  I  S  R  I  E  K  E  S  G  V  T  F  E  H  L  S  A  P  Q  P  A  D  V  A  K  A  A  G  K  E  A  A  D  I  I  A  G  I  S  D  S :   V  I  P  V  F  K  A  A  A  E  E  L  L  N  T  S  D  L  S  P  A  E  L  L  A  K  A  L  A  K  A  A  :  G  Y  S  E  I  K  T  R  S  L  L  T  S  M  E  N  C  V  T  L  L  L  E  C  G  R  P  I  F  S  P  S :   F  V  Y  S  F  L  R  R  F  L  P  E  E  K  V  E  S  I  N  G  L  T  L  T  A  D  G  K  G  A  V  F  D  V  A  A  E  H  L  D  E  F  L  S   : G  Q  K  T  A  H  G  V  N  I  E  V  V  E  A  L  P  P  L  Q  E  R  E  K  P  R  G  G  R  F  G  G  G  G  R  G  G  G  F  G  N  R  R  G  G  G  G  F  S  G  G  R  G  G  R  G  N  G  N  F  G  R  R  W  *  G  M  A  T  *  F  F  *  *  L  T  I  Q  E  F  V  Q  G  C  V  Q  N  F  G  I  V  K  K  M  Y  G  T  S  V  R  F  L  L  Y  *  F  Y  *  F  I  *  V  S  P  P  C  T  L  L  H  Y  A  F  R  *  L  A  F  L  *  C  S  S  M  F  Y  Y  I  F  G  *  T  L  E  K  L  L  F  I  L  Y  G  I  V  T  *  R  N  H  I  Q  F  K  F  N  L  L  Y  V  W  L  H  T  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0271L05.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97085" stop="97627"/>
                    <exon start="98942" stop="99076"/>
                    <exon start="99174" stop="99314"/>
                    <exon start="99395" stop="99506"/>
                    <exon start="99711" stop="99781"/>
                    <exon start="100005" stop="100159"/>
                    <exon start="100252" stop="100363"/>
                    <exon start="100592" stop="100693"/>
                    <exon start="100784" stop="100844"/>
                    <exon start="100932" stop="101100"/>
                    <exon start="101173" stop="101269"/>
                    <exon start="101354" stop="101448"/>
                    <exon start="102252" stop="102385"/>
                    <exon start="102599" stop="102792"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2118</number_coding_nucleotides>
                  <number_encoded_amino_acids>706</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLRLTAEYTVFGRRAIPPTNKVIMPALVVTEETMASELSKKKMKKTPKTDIETPTDKKTKEKKSKKSKIESGSDSEDAKRSKKKEKKRKALDLDGEKSDTSSEICEPVDLKKNKKAKFDDEQVMVEKKVEDPNALSNFRISKPLKEALNSKGIEALFPIQAMTFDDILDGCDLVGRARTGQGKTLAFVLPILESLTNGPTKALRKTGYGKAPSVLVLLPTRELALQVFADFEVYGRAVGLTSCCLYGNSPMGAQQAQLKRGVDIVVGTPGRVKDHIERGNIDFGSLKFRVLDEVDEMLKIGFVDDVEFILGKVEDASLVQTVLFSATLPVWVKHIASKFLKPDKKTADLVGNEKMKASKNVRHIIIPCSSSARPQLIPDIIRCYGSGGRTIIFTETRALASELAGLLPGASALHGEIQQNQREATLKGFRSGKFMTLVATNVAARGLDIDDVQLIIQCEATSDVEAYIHRSGRTGRAGKSGVAVMLYDPRKSNISRIEKESGVTFEHLSAPQPADVAKAAGKEAADIIAGISDSVIPVFKAAAEELLNTSDLSPAELLAKALAKAAGYSEIKTRSLLTSMENCVTLLLECGRPIFSPSFVYSFLRRFLPEEKVESINGLTLTADGKGAVFDVAAEHLDEFLSGQKTAHGVNIEVVEALPPLQEREKPRGGRFGGGGRGGGFGNRRGGGGFSGGRGGRGNGNFGRRW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0271L05.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102768" stop="103028"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WQLWSQMVRNGDIIFLIADNTRVCPRLRSKFWYSEENVWDFSKVSSVLILLIYIGFSSLYPASLCFSLVSFLVVFFHVLLYFWLDT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="100796" e_stop="100844"/>
            <exon e_start="100932" e_stop="101100"/>
            <exon e_start="101173" e_stop="101448"/>
            <exon e_start="102252" e_stop="102385"/>
            <exon e_start="102599" e_stop="102783"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.913" acc_prob="0.979" e_score="0.959"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="0.994"/>
          <exon-intron don_prob="0.969" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.997" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="100796" e_stop="100844" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.913" acc_prob="0.979">
            <gDNA_intron_boundary i_start="100845" i_stop="100931" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="100932" e_stop="101100" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="101101" i_stop="101172" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101173" e_stop="101448" e_length="276"/>
          </exon>
          <intron i_serial="3" don_prob="0.969" acc_prob="0.908">
            <gDNA_intron_boundary i_start="101449" i_stop="102251" i_length="803"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="102252" e_stop="102385" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.967" acc_prob="0.997">
            <gDNA_intron_boundary i_start="102386" i_stop="102598" i_length="213"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102599" e_stop="102783" e_length="185"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100796" stop="100844"/>
              <exon start="100932" stop="101100"/>
              <exon start="101173" stop="101448"/>
              <exon start="102252" stop="102385"/>
              <exon start="102599" stop="102783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335902" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTG : GAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGGTATTTCTGATAG : TGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCTGTATGTTTCTGTTGTCTTATTTATTCTCTCTGGGAGGCAAACCTCCTTATCTTACTGTTGACTATCTTGTGTCTTGCTTTCCAGGGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTC : CTTTGTCTATAGTTTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAG : GCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGC</gDNA_template>
            <first_frame> S  D  V  E  A  Y  I  H  R  S  G  R  T  G  R  A   : G  K  S  G  V  A  V  M  L  Y  D  P  R  K  S  N  I  S  R  I  E  K  E  S  G  V  T  F  E  H  L  S  A  P  Q  P  A  D  V  A  K  A  A  G  K  E  A  A  D  I  I  A  G  I  S  D  S :   V  I  P  V  F  K  A  A  A  E  E  L  L  N  T  S  D  L  S  P  A  E  L  L  A  K  A  L  A  K  A  A  V  C  F  C  C  L  I  Y  S  L  W  E  A  N  L  L  I  L  L  L  T  I  L  C  L  A  F  Q  G  Y  S  E  I  K  T  R  S  L  L  T  S  M  E  N  C  V  T  L  L  L  E  C  G  R  P  I  F  S  P  S :   F  V  Y  S  F  L  R  R  F  L  P  E  E  K  V  E  S  I  N  G  L  T  L  T  A  D  G  K  G  A  V  F  D  V  A  A  E  H  L  D  E  F  L  S   : G  Q  K  T  A  H  G  V  N  I  E  V  V  E  A  L  P  P  L  Q  E  R  E  K  P  R  G  G  R  F  G  G  G  G  R  G  G  G  F  G  N  R  R  G  G  G  G  F  S  G  G  R  G  G  R  G  N  G  N  F  G  R </first_frame>
            <second_frame>  V  T  W  K  H  T  F  I  D  L  E  G  Q  D  G  L  :  E  R  V  A  L  L  *  C  C  M  I  Q  G  S  Q  T  F  L  E  S  K  K  N  L  V  *  P  L  S  I  C  L  L  L  S  Q  L  M  L  P  R  Q  L  G  K  K  L  L  I  *  L  R  V  F  L  I   : V  S  Y  L  Y  L  R  L  L  Q  R  S  F  *  I  L  L  T  Y  H  Q  Q  N  Y  L  R  K  L  L  P  R  L  L  Y  V  S  V  V  L  F  I  L  S  G  R  Q  T  S  L  S  Y  C  *  L  S  C  V  L  L  S  R  A  I  L  R  S  R  L  D  R  F  L  L  L  W  R  T  V  L  L  C  F  S  S  V  G  D  P  S  S  H  L   : P  L  S  I  V  S  *  G  G  S  C  L  R  R  R  L  N  Q  S  M  V  L  L  *  Q  L  M  E  R  G  Q  F  L  M  L  L  L  S  T  W  M  N  F  S  Q  :  A  K  K  L  H  M  G  *  I  *  R  L  W  K  R  C  L  L  C  K  R  E  R  S  Q  E  V  E  D  L  E  V  V  A  V  A  A  A  S  V  T  E  E  A  E  V  A  F  L  E  E  E  G  G  E  V  M  A  T  L  V   </second_frame>
            <third_frame>   *  R  G  S  I  H  S  S  I  W  K  D  R  T  G  W :   K  E  W  R  C  C  N  A  V  *  S  K  E  V  K  H  F  *  N  R  K  R  I  W  C  D  L  *  A  F  V  C  S  S  A  S  *  C  C  Q  G  S  W  E  R  S  C  *  Y  N  C  G  Y  F  *  *  :  C  H  T  C  I  *  G  C  C  R  G  A  S  E  Y  F  *  P  I  T  S  R  I  T  C  E  S  S  C  Q  G  C  C  M  F  L  L  S  Y  L  F  S  L  G  G  K  P  P  Y  L  T  V  D  Y  L  V  S  C  F  P  G  L  F  *  D  Q  D  S  I  A  S  Y  F  Y  G  E  L  C  Y  S  A  S  R  V  W  E  T  H  L  L  T  F  :  L  C  L  *  F  P  E  E  V  L  A  *  G  E  G  *  I  N  Q  W  S  Y  F  D  S  *  W  K  G  G  S  F  *  C  C  C  *  A  L  G  *  I  S  L  R :   P  K  N  C  T  W  G  K  Y  R  G  C  G  S  A  A  S  F  A  R  E  R  E  A  K  R  W  K  I  W  R  W  W  P  W  R  R  L  R  *  Q  K  R  R  R  W  L  F  W  R  K  R  G  E  R  *  W  Q  L  W  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0271L05.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100796" stop="100844"/>
                    <exon start="100932" stop="101100"/>
                    <exon start="101173" stop="101448"/>
                    <exon start="102252" stop="102385"/>
                    <exon start="102599" stop="102783"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDVEAYIHRSGRTGRAGKSGVAVMLYDPRKSNISRIEKESGVTFEHLSAPQPADVAKAAGKEAADIIAGISDSVIPVFKAAAEELLNTSDLSPAELLAKALAKAAVCFCCLIYSLWEANLLILLLTILCLAFQGYSEIKTRSLLTSMENCVTLLLECGRPIFSPSFVYSFLRRFLPEEKVESINGLTLTADGKGAVFDVAAEHLDEFLSGQKTAHGVNIEVVEALPPLQEREKPRGGRFGGGGRGGGFGNRRGGGGFSGGRGGRGNGNFGR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="100639" e_stop="100693"/>
            <exon e_start="100784" e_stop="100844"/>
            <exon e_start="100932" e_stop="101100"/>
            <exon e_start="101173" e_stop="101269"/>
            <exon e_start="101354" e_stop="101448"/>
            <exon e_start="102252" e_stop="102385"/>
            <exon e_start="102599" e_stop="102633"/>
            <exon e_start="102684" e_stop="102838"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="0.982"/>
          <exon-intron don_prob="0.913" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="0.994"/>
          <exon-intron don_prob="0.995" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.997" e_score="0.993"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="100639" e_stop="100693" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="100694" i_stop="100783" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100784" e_stop="100844" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.913" acc_prob="0.979">
            <gDNA_intron_boundary i_start="100845" i_stop="100931" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="100932" e_stop="101100" e_length="169"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="101101" i_stop="101172" i_length="72"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101173" e_stop="101269" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.953">
            <gDNA_intron_boundary i_start="101270" i_stop="101353" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="101354" e_stop="101448" e_length="95"/>
          </exon>
          <intron i_serial="5" don_prob="0.969" acc_prob="0.908">
            <gDNA_intron_boundary i_start="101449" i_stop="102251" i_length="803"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="102252" e_stop="102385" e_length="134"/>
          </exon>
          <intron i_serial="6" don_prob="0.967" acc_prob="0.997">
            <gDNA_intron_boundary i_start="102386" i_stop="102598" i_length="213"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="102599" e_stop="102633" e_length="35"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="102634" i_stop="102683" i_length="50"/>
          </intron>
          <exon e_serial="8" e_score="0.903">
            <gDNA_exon_boundary e_start="102684" e_stop="102838" e_length="155"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100639" stop="100693"/>
              <exon start="100784" stop="100844"/>
              <exon start="100932" stop="101100"/>
              <exon start="101173" stop="101269"/>
              <exon start="101354" stop="101448"/>
              <exon start="102252" stop="102385"/>
              <exon start="102599" stop="102633"/>
              <exon start="102684" stop="102838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335903" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAAATGTGGCAGCCCGTGGATTGGATATCGATGATGTTCAGTTAATTATCCAG : TGCGAAGCCACTAGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTG : GAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGGTATTTCTGATAG : TGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCT : GGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTC : CTTTGTCTATAGTTTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAG : GCCAAAAAACTGCACATGGGGTAAATATAGAGGTT : ATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTG</gDNA_template>
            <first_frame> H  K  C  G  S  P  W  I  G  Y  R  *  C  S  V  N  Y  P   : V  R  S  H  *  *  R  G  S  I  H  S  S  I  W  K  D  R  T  G  W :   K  E  W  R  C  C  N  A  V  *  S  K  E  V  K  H  F  *  N  R  K  R  I  W  C  D  L  *  A  F  V  C  S  S  A  S  *  C  C  Q  G  S  W  E  R  S  C  *  Y  N  C  G  Y  F  *  *  :  C  H  T  C  I  *  G  C  C  R  G  A  S  E  Y  F  *  P  I  T  S  R  I  T  C  E  S  S  C  Q  G  C   : W  L  F  *  D  Q  D  S  I  A  S  Y  F  Y  G  E  L  C  Y  S  A  S  R  V  W  E  T  H  L  L  T  F  :  L  C  L  *  F  P  E  E  V  L  A  *  G  E  G  *  I  N  Q  W  S  Y  F  D  S  *  W  K  G  G  S  F  *  C  C  C  *  A  L  G  *  I  S  L  R :   P  K  N  C  T  W  G  K  Y  R  G   : Y  L  E  V  V  A  V  A  A  A  S  V  T  E  E  A  E  V  A  F  L  E  E  E  G  G  E  V  M  A  T  L  V  A  D  G  K  E  W  R  H  N  F  F  D  S  *  Q  Y  K  S  L </first_frame>
            <second_frame>  T  N  V  A  A  R  G  L  D  I  D  D  V  Q  L  I  I  Q  :  C  E  A  T  S  D  V  E  A  Y  I  H  R  S  G  R  T  G  R  A   : G  K  S  G  V  A  V  M  L  Y  D  P  R  K  S  N  I  S  R  I  E  K  E  S  G  V  T  F  E  H  L  S  A  P  Q  P  A  D  V  A  K  A  A  G  K  E  A  A  D  I  I  A  G  I  S  D  S :   V  I  P  V  F  K  A  A  A  E  E  L  L  N  T  S  D  L  S  P  A  E  L  L  A  K  A  L  A  K  A  A  :  G  Y  S  E  I  K  T  R  S  L  L  T  S  M  E  N  C  V  T  L  L  L  E  C  G  R  P  I  F  S  P  S :   F  V  Y  S  F  L  R  R  F  L  P  E  E  K  V  E  S  I  N  G  L  T  L  T  A  D  G  K  G  A  V  F  D  V  A  A  E  H  L  D  E  F  L  S   : G  Q  K  T  A  H  G  V  N  I  E  V  :  I  W  R  W  W  P  W  R  R  L  R  *  Q  K  R  R  R  W  L  F  W  R  K  R  G  E  R  *  W  Q  L  W  S  Q  M  V  R  N  G  D  I  I  F  L  I  A  D  N  T  R  V   </second_frame>
            <third_frame>   Q  M  W  Q  P  V  D  W  I  S  M  M  F  S  *  L  S  S :   A  K  P  L  V  T  W  K  H  T  F  I  D  L  E  G  Q  D  G  L  :  E  R  V  A  L  L  *  C  C  M  I  Q  G  S  Q  T  F  L  E  S  K  K  N  L  V  *  P  L  S  I  C  L  L  L  S  Q  L  M  L  P  R  Q  L  G  K  K  L  L  I  *  L  R  V  F  L  I   : V  S  Y  L  Y  L  R  L  L  Q  R  S  F  *  I  L  L  T  Y  H  Q  Q  N  Y  L  R  K  L  L  P  R  L  L :   A  I  L  R  S  R  L  D  R  F  L  L  L  W  R  T  V  L  L  C  F  S  S  V  G  D  P  S  S  H  L   : P  L  S  I  V  S  *  G  G  S  C  L  R  R  R  L  N  Q  S  M  V  L  L  *  Q  L  M  E  R  G  Q  F  L  M  L  L  L  S  T  W  M  N  F  S  Q  :  A  K  K  L  H  M  G  *  I  *  R  L :   F  G  G  G  G  R  G  G  G  F  G  N  R  R  G  G  G  G  F  S  G  G  R  G  G  R  G  N  G  N  F  G  R  R  W  *  G  M  A  T  *  F  F  *  *  L  T  I  Q  E  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0271L05.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100640" stop="100693"/>
                    <exon start="100784" stop="100844"/>
                    <exon start="100932" stop="101100"/>
                    <exon start="101173" stop="101269"/>
                    <exon start="101354" stop="101448"/>
                    <exon start="102252" stop="102385"/>
                    <exon start="102599" stop="102633"/>
                    <exon start="102684" stop="102719"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNVAARGLDIDDVQLIIQCEATSDVEAYIHRSGRTGRAGKSGVAVMLYDPRKSNISRIEKESGVTFEHLSAPQPADVAKAAGKEAADIIAGISDSVIPVFKAAAEELLNTSDLSPAELLAKALAKAAGYSEIKTRSLLTSMENCVTLLLECGRPIFSPSFVYSFLRRFLPEEKVESINGLTLTADGKGAVFDVAAEHLDEFLSGQKTAHGVNIEVIWRWWPWRRLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="105113" PGL_stop="105765"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105113" e_stop="105765"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="105113" e_stop="105765" e_length="653"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105113" stop="105765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340496" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATGCAAATGAAATCTGCAGTAAGAGCATATAGTCTTGCTATTAAAAAAGAATTTCTTTGTGATCAATCCAAAAGTAAAAGTTGGAAAGTTATTTGCAAGCGTCATGAGTTAGGGTGTGATTGGATGATTCGGTTTAGAGAGATTTCAAGCGGTATATGGAAGACAGGAAAAATGATTGAACCGCATACTTGTCTTACAGATAACTATAAGGAGGATCATTTCAATTTGAATGATAACATGATTGCCACTTCATTAATACCATATGTTATGCAAAATTCGGACATAAATATTAAGATGATCCGTGAAATTATCAAAGGAAAGCATCACTATACTCCTAGTTACAGAAAAGCACAAAAAGGTCGAAGAAAAGTATTTCGAATGGTTTATGGTGATTTTGAAAGTTCATTTAAGGCATTACCTCGATACATGGCTGCACTACAATTATTCAATCCAAGCACTATTATTGAGTGGGAGCATCATTCTACAACAATGCAAGGTGAGCAAATTTTTAAATTTCTTTTTTGGGCTTTTAAACAGAGCATTGATGGTTTCAAAAGTTGTAGGCCGGTCATTTCTATCGACGGCACACATCTTTATGGTTTGTATGATATCAAATTGTTAATTGCGGTTGGAATTGATGCGAATGGAAAT</gDNA_template>
            <first_frame> R  C  K  *  N  L  Q  *  E  H  I  V  L  L  L  K  K  N  F  F  V  I  N  P  K  V  K  V  G  K  L  F  A  S  V  M  S  *  G  V  I  G  *  F  G  L  E  R  F  Q  A  V  Y  G  R  Q  E  K  *  L  N  R  I  L  V  L  Q  I  T  I  R  R  I  I  S  I  *  M  I  T  *  L  P  L  H  *  Y  H  M  L  C  K  I  R  T  *  I  L  R  *  S  V  K  L  S  K  E  S  I  T  I  L  L  V  T  E  K  H  K  K  V  E  E  K  Y  F  E  W  F  M  V  I  L  K  V  H  L  R  H  Y  L  D  T  W  L  H  Y  N  Y  S  I  Q  A  L  L  L  S  G  S  I  I  L  Q  Q  C  K  V  S  K  F  L  N  F  F  F  G  L  L  N  R  A  L  M  V  S  K  V  V  G  R  S  F  L  S  T  A  H  I  F  M  V  C  M  I  S  N  C  *  L  R  L  E  L  M  R  M  E   </first_frame>
            <second_frame>  D  A  N  E  I  C  S  K  S  I  *  S  C  Y  *  K  R  I  S  L  *  S  I  Q  K  *  K  L  E  S  Y  L  Q  A  S  *  V  R  V  *  L  D  D  S  V  *  R  D  F  K  R  Y  M  E  D  R  K  N  D  *  T  A  Y  L  S  Y  R  *  L  *  G  G  S  F  Q  F  E  *  *  H  D  C  H  F  I  N  T  I  C  Y  A  K  F  G  H  K  Y  *  D  D  P  *  N  Y  Q  R  K  A  S  L  Y  S  *  L  Q  K  S  T  K  R  S  K  K  S  I  S  N  G  L  W  *  F  *  K  F  I  *  G  I  T  S  I  H  G  C  T  T  I  I  Q  S  K  H  Y  Y  *  V  G  A  S  F  Y  N  N  A  R  *  A  N  F  *  I  S  F  L  G  F  *  T  E  H  *  W  F  Q  K  L  *  A  G  H  F  Y  R  R  H  T  S  L  W  F  V  *  Y  Q  I  V  N  C  G  W  N  *  C  E  W  K  </second_frame>
            <third_frame>   M  Q  M  K  S  A  V  R  A  Y  S  L  A  I  K  K  E  F  L  C  D  Q  S  K  S  K  S  W  K  V  I  C  K  R  H  E  L  G  C  D  W  M  I  R  F  R  E  I  S  S  G  I  W  K  T  G  K  M  I  E  P  H  T  C  L  T  D  N  Y  K  E  D  H  F  N  L  N  D  N  M  I  A  T  S  L  I  P  Y  V  M  Q  N  S  D  I  N  I  K  M  I  R  E  I  I  K  G  K  H  H  Y  T  P  S  Y  R  K  A  Q  K  G  R  R  K  V  F  R  M  V  Y  G  D  F  E  S  S  F  K  A  L  P  R  Y  M  A  A  L  Q  L  F  N  P  S  T  I  I  E  W  E  H  H  S  T  T  M  Q  G  E  Q  I  F  K  F  L  F  W  A  F  K  Q  S  I  D  G  F  K  S  C  R  P  V  I  S  I  D  G  T  H  L  Y  G  L  Y  D  I  K  L  L  I  A  V  G  I  D  A  N  G  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0271L05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105115" stop="105765"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MQMKSAVRAYSLAIKKEFLCDQSKSKSWKVICKRHELGCDWMIRFREISSGIWKTGKMIEPHTCLTDNYKEDHFNLNDNMIATSLIPYVMQNSDINIKMIREIIKGKHHYTPSYRKAQKGRRKVFRMVYGDFESSFKALPRYMAALQLFNPSTIIEWEHHSTTMQGEQIFKFLFWAFKQSIDGFKSCRPVISIDGTHLYGLYDIKLLIAVGIDANGN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="110250" PGL_stop="106814"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110250" e_stop="108425"/>
            <exon e_start="108343" e_stop="107816"/>
            <exon e_start="107715" e_stop="107392"/>
            <exon e_start="106867" e_stop="106814"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="1.000" e_score="0.992"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.981"/>
          <exon-only e_score="0.556"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="110250" e_stop="108425" e_length="1826"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="1.000">
            <gDNA_intron_boundary i_start="108424" i_stop="108344" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="108343" e_stop="107816" e_length="528"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="107815" i_stop="107716" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="107715" e_stop="107392" e_length="324"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="107391" i_stop="106868" i_length="524"/>
          </intron>
          <exon e_serial="4" e_score="0.556">
            <gDNA_exon_boundary e_start="106867" e_stop="106814" e_length="54"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110250" stop="109442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109508" stop="108425"/>
              <exon start="108343" stop="108200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108325" stop="107816"/>
              <exon start="107715" stop="107392"/>
              <exon start="106867" stop="106814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319653" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTACTTTCAATCTTCCACAATCTTAAAATTCTTGTTATTCTTCAAATTTTCTAAAGTTTTTCAAAGCATTTTCTTTATAAGGTGAGTTTAAATTTATTTTATTTTTAATTTATTTTAATTAATTTTATACTTTTATATGATATTGTTGATATATTCAATCGTTTGATACTTATATTAATGTTAATTTTTATTTTTATTTTTTGTGTATAGATATGGATCCATCAAATTTATACGTACATCCTGGTCCAGTAGAGCATGATGTATTAAAAATTCAAGTTTATCATCGTTCCGAAGGAATTTGGAATGGTAGCATAAAAGAAGAGAGATGTTGCTTATATACGAGTCGTGGTGATATTGAATTTTGGCAACATTTAAAATATCATCCATTACATTCTCGCATCCTTCAATATTTTGAAAATTGTAGATTTAAAGGAATTCTTGATGTTGGATGTGTGCCGTATGACTCCGGATTAATTTCTGCTTTAATTGAAAGGTGGCGTCCGGAAACTCATACTTTTCACATGCGAACTGGCGAGGCTACCATAACTTTACAAGATATTGAAATTTTATTCGGAATGGTAGTAGATGGTAGTCCTATAATTTTAAATGGAGCTGATTCTTTAAGGATTATAGGTAGACAAGAAATGATTTTTCAATTAACAGGATGGTTACCCGATACTAGTTGTTTTTCTGGTGTTAGTAGATTGTCAACATATAAATTGATTGAGTATATCGAAGGTTTGGAAGTTATTAACGATAACTCAACTGAGCATGAAGTTCAACAAAGATTTAGATTATATTTATTATGGTTATGTGGTGGATCAATATTTCCGGATAAATCTAATAATAAGATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGATCGGCCGCATTATCATATTTGTATAATTGTTTATGCCGTGCGTCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTATACATATTTTTTGATTAAATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATGGTGAATTTATTTATTGTAGATTTGGGCATGGAAAAGAATTATTCCCCTGCAACCATTGCCAAAGCCTCTAAGAACCAATCAATTTGAGGCTTTAACTGCACTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTTGATAATCTAACTGATGAACAGGTATTTAATATTATTAGTATCTTATACTTTTCATATTTTATTTTATTTTAAATAAGAATATATTTTTTTCTGCCAATGTTGTTTTTATAATTATCTTACTTAATTATTTTTTTATAGTTTATTTGGCAGCCTTATTCGGAAGATGTTATTAATGGATTGCCTGAGTGGTGTCGGTCAGGACAACGTGTCTGGATGGCACAGGTGCCACTGATTTATGGAATTTATCGTGAGTGGCACATGGTTGATCGTGTTGTGAGACAGTTCGGTTATTTACAACATATTCCTGGACCGTGTACCCAATTTTCCGAATATCATTTTAAGCGTGATAAACGATCAAAAATAAAACAAGAAGATATAGATGCATTTAACTATACACAATATTTATGGGAACAACGTCAAAATCGTATATTTCGACCTCCATTTGTAAGTGATCAAATAGATTACTTCCGTTGGTACATGAGGCATACCCGCATGGTCATTGGAAATCCACAACATGTTGTACAAAAAGGGTATCAACACATGGCAGGAAGACATGAGGCATTA : GCTAGGGGTCATGAAATGCAGTATCGTCGAGCTCGGATGATTGAAAATGATGAAAATCAATCTAATGAAATGAGACAATATGCAGCGGAAGTCGCTCGTATTTCAATGGAGTCAATGAATGCGGCCTTTCAGGGAACGCGATTGAGCTTTGATCATGATTACAATCCTCCCACTCAATACGATGAACCACCACCAGTACAAGTATCTCGCCGATCACGACAAACAACACCGAGAGAGGGTGCTCGTCGAGGTAGAAGGATCACTAGTGAAACAACTGATTTTTCTGCAGGGCCCTCTAACACTAATGTGGCGACTCCCGAGCCTTATTATCCCACATTTGATTTTTCTGTAGGGCCCTCTAACACTAATCCGAATTTTTCTAGTCAGCAAACAGTTGGTTTTGTAACTCCGCAGGTTCCAATATCTGGGTTTGCACAATTTAGTGGTTCTCAATATGGTTTTCAACATGGTATGCGTGAATTTCCGATACATAATTCTCCATTTGGTGGAAGATTGAATTTTTCGAAT : GTAACTGCGTTTGATGATTCAAGATTTAATGCTGGGGCTTCACAAAATTTAGTTCTTAATAGACAAAATCCACCTCGGAGAACATCTAGGCTACACAAATCAACTAGATGTGGAACAGGCAGTCACAATCAAAATGAGGAAGATTTTGAAAATGAAGATGAAAATGAAGATGAGAATGAAGATGTAGAAGATTCTGATTCAGAAGAATAATTTTTTTTATGCACCTTTATTCTAAAAGGCTGAAGATTCGAATTTTGAAATATGTAAATTTTGTTGTTTCGTGCAAGTTTGAACAAAGTAATGAGATTATGTTTGAACAAGTTT : ATTAACCTTAAAAACATATACAAAATATTTAAAATCGAGTAGGACATCGTGCCT</gDNA_template>
            <first_frame> I  Y  F  Q  S  S  T  I  L  K  F  L  L  F  F  K  F  S  K  V  F  Q  S  I  F  F  I  R  *  V  *  I  Y  F  I  F  N  L  F  *  L  I  L  Y  F  Y  M  I  L  L  I  Y  S  I  V  *  Y  L  Y  *  C  *  F  L  F  L  F  F  V  Y  R  Y  G  S  I  K  F  I  R  T  S  W  S  S  R  A  *  C  I  K  N  S  S  L  S  S  F  R  R  N  L  E  W  *  H  K  R  R  E  M  L  L  I  Y  E  S  W  *  Y  *  I  L  A  T  F  K  I  S  S  I  T  F  S  H  P  S  I  F  *  K  L  *  I  *  R  N  S  *  C  W  M  C  A  V  *  L  R  I  N  F  C  F  N  *  K  V  A  S  G  N  S  Y  F  S  H  A  N  W  R  G  Y  H  N  F  T  R  Y  *  N  F  I  R  N  G  S  R  W  *  S  Y  N  F  K  W  S  *  F  F  K  D  Y  R  *  T  R  N  D  F  S  I  N  R  M  V  T  R  Y  *  L  F  F  W  C  *  *  I  V  N  I  *  I  D  *  V  Y  R  R  F  G  S  Y  *  R  *  L  N  *  A  *  S  S  T  K  I  *  I  I  F  I  M  V  M  W  W  I  N  I  S  G  *  I  *  *  *  D  *  F  G  H  F  D  *  H  E  K  F  R  F  N  V  N  S  S  M  G  I  G  R  I  I  I  F  V  *  L  F  M  P  C  V  N  E  K  I  K  *  S  L  W  I  S  L  F  S  A  G  I  H  I  F  *  L  N  I  F  Y  I  L  V  I  C  T  F  K  F  K  C  I  I  S  N  G  E  F  I  Y  C  R  F  G  H  G  K  E  L  F  P  C  N  H  C  Q  S  L  *  E  P  I  N  L  R  L  *  L  H  L  H  V  N  G  R  D  V  E  I  I  K  M  R  H  E  L  *  S  V  *  L  G  M  Y  L  I  I  *  L  M  N  R  Y  L  I  L  L  V  S  Y  T  F  H  I  L  F  Y  F  K  *  E  Y  I  F  F  C  Q  C  C  F  Y  N  Y  L  T  *  L  F  F  Y  S  L  F  G  S  L  I  R  K  M  L  L  M  D  C  L  S  G  V  G  Q  D  N  V  S  G  W  H  R  C  H  *  F  M  E  F  I  V  S  G  T  W  L  I  V  L  *  D  S  S  V  I  Y  N  I  F  L  D  R  V  P  N  F  P  N  I  I  L  S  V  I  N  D  Q  K  *  N  K  K  I  *  M  H  L  T  I  H  N  I  Y  G  N  N  V  K  I  V  Y  F  D  L  H  L  *  V  I  K  *  I  T  S  V  G  T  *  G  I  P  A  W  S  L  E  I  H  N  M  L  Y  K  K  G  I  N  T  W  Q  E  D  M  R  H  * :   L  G  V  M  K  C  S  I  V  E  L  G  *  L  K  M  M  K  I  N  L  M  K  *  D  N  M  Q  R  K  S  L  V  F  Q  W  S  Q  *  M  R  P  F  R  E  R  D  *  A  L  I  M  I  T  I  L  P  L  N  T  M  N  H  H  Q  Y  K  Y  L  A  D  H  D  K  Q  H  R  E  R  V  L  V  E  V  E  G  S  L  V  K  Q  L  I  F  L  Q  G  P  L  T  L  M  W  R  L  P  S  L  I  I  P  H  L  I  F  L  *  G  P  L  T  L  I  R  I  F  L  V  S  K  Q  L  V  L  *  L  R  R  F  Q  Y  L  G  L  H  N  L  V  V  L  N  M  V  F  N  M  V  C  V  N  F  R  Y  I  I  L  H  L  V  E  D  *  I  F  R  M :   *  L  R  L  M  I  Q  D  L  M  L  G  L  H  K  I  *  F  L  I  D  K  I  H  L  G  E  H  L  G  Y  T  N  Q  L  D  V  E  Q  A  V  T  I  K  M  R  K  I  L  K  M  K  M  K  M  K  M  R  M  K  M  *  K  I  L  I  Q  K  N  N  F  F  Y  A  P  L  F  *  K  A  E  D  S  N  F  E  I  C  K  F  C  C  F  V  Q  V  *  T  K  *  *  D  Y  V  *  T  S  L :   L  T  L  K  T  Y  T  K  Y  L  K  S  S  R  T  S  C   </first_frame>
            <second_frame>  S  T  F  N  L  P  Q  S  *  N  S  C  Y  S  S  N  F  L  K  F  F  K  A  F  S  L  *  G  E  F  K  F  I  L  F  L  I  Y  F  N  *  F  Y  T  F  I  *  Y  C  *  Y  I  Q  S  F  D  T  Y  I  N  V  N  F  Y  F  Y  F  L  C  I  D  M  D  P  S  N  L  Y  V  H  P  G  P  V  E  H  D  V  L  K  I  Q  V  Y  H  R  S  E  G  I  W  N  G  S  I  K  E  E  R  C  C  L  Y  T  S  R  G  D  I  E  F  W  Q  H  L  K  Y  H  P  L  H  S  R  I  L  Q  Y  F  E  N  C  R  F  K  G  I  L  D  V  G  C  V  P  Y  D  S  G  L  I  S  A  L  I  E  R  W  R  P  E  T  H  T  F  H  M  R  T  G  E  A  T  I  T  L  Q  D  I  E  I  L  F  G  M  V  V  D  G  S  P  I  I  L  N  G  A  D  S  L  R  I  I  G  R  Q  E  M  I  F  Q  L  T  G  W  L  P  D  T  S  C  F  S  G  V  S  R  L  S  T  Y  K  L  I  E  Y  I  E  G  L  E  V  I  N  D  N  S  T  E  H  E  V  Q  Q  R  F  R  L  Y  L  L  W  L  C  G  G  S  I  F  P  D  K  S  N  N  K  I  N  L  D  I  L  I  D  M  R  N  L  D  L  M  S  T  Q  A  W  G  S  A  A  L  S  Y  L  Y  N  C  L  C  R  A  S  M  K  K  S  N  E  V  C  G  F  L  S  L  V  Q  V  Y  I  F  F  D  *  I  F  F  I  Y  *  *  Y  A  L  L  N  L  S  A  L  *  V  M  V  N  L  F  I  V  D  L  G  M  E  K  N  Y  S  P  A  T  I  A  K  A  S  K  N  Q  S  I  *  G  F  N  C  T  C  T  *  M  D  A  T  *  K  S  S  K  *  G  T  N  C  N  R  C  D  *  G  C  T  *  *  S  N  *  *  T  G  I  *  Y  Y  *  Y  L  I  L  F  I  F  Y  F  I  L  N  K  N  I  F  F  S  A  N  V  V  F  I  I  I  L  L  N  Y  F  F  I  V  Y  L  A  A  L  F  G  R  C  Y  *  W  I  A  *  V  V  S  V  R  T  T  C  L  D  G  T  G  A  T  D  L  W  N  L  S  *  V  A  H  G  *  S  C  C  E  T  V  R  L  F  T  T  Y  S  W  T  V  Y  P  I  F  R  I  S  F  *  A  *  *  T  I  K  N  K  T  R  R  Y  R  C  I  *  L  Y  T  I  F  M  G  T  T  S  K  S  Y  I  S  T  S  I  C  K  *  S  N  R  L  L  P  L  V  H  E  A  Y  P  H  G  H  W  K  S  T  T  C  C  T  K  R  V  S  T  H  G  R  K  T  *  G  I   : S  *  G  S  *  N  A  V  S  S  S  S  D  D  *  K  *  *  K  S  I  *  *  N  E  T  I  C  S  G  S  R  S  Y  F  N  G  V  N  E  C  G  L  S  G  N  A  I  E  L  *  S  *  L  Q  S  S  H  S  I  R  *  T  T  T  S  T  S  I  S  P  I  T  T  N  N  T  E  R  G  C  S  S  R  *  K  D  H  *  *  N  N  *  F  F  C  R  A  L  *  H  *  C  G  D  S  R  A  L  L  S  H  I  *  F  F  C  R  A  L  *  H  *  S  E  F  F  *  S  A  N  S  W  F  C  N  S  A  G  S  N  I  W  V  C  T  I  *  W  F  S  I  W  F  S  T  W  Y  A  *  I  S  D  T  *  F  S  I  W  W  K  I  E  F  F  E   : C  N  C  V  *  *  F  K  I  *  C  W  G  F  T  K  F  S  S  *  *  T  K  S  T  S  E  N  I  *  A  T  Q  I  N  *  M  W  N  R  Q  S  Q  S  K  *  G  R  F  *  K  *  R  *  K  *  R  *  E  *  R  C  R  R  F  *  F  R  R  I  I  F  F  M  H  L  Y  S  K  R  L  K  I  R  I  L  K  Y  V  N  F  V  V  S  C  K  F  E  Q  S  N  E  I  M  F  E  Q  V   : Y  *  P  *  K  H  I  Q  N  I  *  N  R  V  G  H  R  A  </second_frame>
            <third_frame>   L  L  S  I  F  H  N  L  K  I  L  V  I  L  Q  I  F  *  S  F  S  K  H  F  L  Y  K  V  S  L  N  L  F  Y  F  *  F  I  L  I  N  F  I  L  L  Y  D  I  V  D  I  F  N  R  L  I  L  I  L  M  L  I  F  I  F  I  F  C  V  *  I  W  I  H  Q  I  Y  T  Y  I  L  V  Q  *  S  M  M  Y  *  K  F  K  F  I  I  V  P  K  E  F  G  M  V  A  *  K  K  R  D  V  A  Y  I  R  V  V  V  I  L  N  F  G  N  I  *  N  I  I  H  Y  I  L  A  S  F  N  I  L  K  I  V  D  L  K  E  F  L  M  L  D  V  C  R  M  T  P  D  *  F  L  L  *  L  K  G  G  V  R  K  L  I  L  F  T  C  E  L  A  R  L  P  *  L  Y  K  I  L  K  F  Y  S  E  W  *  *  M  V  V  L  *  F  *  M  E  L  I  L  *  G  L  *  V  D  K  K  *  F  F  N  *  Q  D  G  Y  P  I  L  V  V  F  L  V  L  V  D  C  Q  H  I  N  *  L  S  I  S  K  V  W  K  L  L  T  I  T  Q  L  S  M  K  F  N  K  D  L  D  Y  I  Y  Y  G  Y  V  V  D  Q  Y  F  R  I  N  L  I  I  R  L  I  W  T  F  *  L  T  *  E  I  *  I  *  C  Q  L  K  H  G  D  R  P  H  Y  H  I  C  I  I  V  Y  A  V  R  Q  *  K  N  Q  M  K  F  V  D  F  S  L  *  C  R  Y  T  Y  F  L  I  K  Y  F  L  Y  T  S  N  M  H  F  *  I  *  V  H  Y  K  *  W  *  I  Y  L  L  *  I  W  A  W  K  R  I  I  P  L  Q  P  L  P  K  P  L  R  T  N  Q  F  E  A  L  T  A  L  A  R  K  W  T  R  R  R  N  H  Q  N  E  A  R  T  V  I  G  V  I  R  D  V  L  D  N  L  T  D  E  Q  V  F  N  I  I  S  I  L  Y  F  S  Y  F  I  L  F  *  I  R  I  Y  F  F  L  P  M  L  F  L  *  L  S  Y  L  I  I  F  L  *  F  I  W  Q  P  Y  S  E  D  V  I  N  G  L  P  E  W  C  R  S  G  Q  R  V  W  M  A  Q  V  P  L  I  Y  G  I  Y  R  E  W  H  M  V  D  R  V  V  R  Q  F  G  Y  L  Q  H  I  P  G  P  C  T  Q  F  S  E  Y  H  F  K  R  D  K  R  S  K  I  K  Q  E  D  I  D  A  F  N  Y  T  Q  Y  L  W  E  Q  R  Q  N  R  I  F  R  P  P  F  V  S  D  Q  I  D  Y  F  R  W  Y  M  R  H  T  R  M  V  I  G  N  P  Q  H  V  V  Q  K  G  Y  Q  H  M  A  G  R  H  E  A  L  :  A  R  G  H  E  M  Q  Y  R  R  A  R  M  I  E  N  D  E  N  Q  S  N  E  M  R  Q  Y  A  A  E  V  A  R  I  S  M  E  S  M  N  A  A  F  Q  G  T  R  L  S  F  D  H  D  Y  N  P  P  T  Q  Y  D  E  P  P  P  V  Q  V  S  R  R  S  R  Q  T  T  P  R  E  G  A  R  R  G  R  R  I  T  S  E  T  T  D  F  S  A  G  P  S  N  T  N  V  A  T  P  E  P  Y  Y  P  T  F  D  F  S  V  G  P  S  N  T  N  P  N  F  S  S  Q  Q  T  V  G  F  V  T  P  Q  V  P  I  S  G  F  A  Q  F  S  G  S  Q  Y  G  F  Q  H  G  M  R  E  F  P  I  H  N  S  P  F  G  G  R  L  N  F  S  N  :  V  T  A  F  D  D  S  R  F  N  A  G  A  S  Q  N  L  V  L  N  R  Q  N  P  P  R  R  T  S  R  L  H  K  S  T  R  C  G  T  G  S  H  N  Q  N  E  E  D  F  E  N  E  D  E  N  E  D  E  N  E  D  V  E  D  S  D  S  E  E  *  F  F  L  C  T  F  I  L  K  G  *  R  F  E  F  *  N  M  *  I  L  L  F  R  A  S  L  N  K  V  M  R  L  C  L  N  K  F  :  I  N  L  K  N  I  Y  K  I  F  K  I  E  *  D  I  V  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0271L05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108850" stop="108425"/>
                    <exon start="108343" stop="107816"/>
                    <exon start="107715" stop="107506"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1161</number_coding_nucleotides>
                  <number_encoded_amino_acids>387</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIWQPYSEDVINGLPEWCRSGQRVWMAQVPLIYGIYREWHMVDRVVRQFGYLQHIPGPCTQFSEYHFKRDKRSKIKQEDIDAFNYTQYLWEQRQNRIFRPPFVSDQIDYFRWYMRHTRMVIGNPQHVVQKGYQHMAGRHEALARGHEMQYRRARMIENDENQSNEMRQYAAEVARISMESMNAAFQGTRLSFDHDYNPPTQYDEPPPVQVSRRSRQTTPREGARRGRRITSETTDFSAGPSNTNVATPEPYYPTFDFSVGPSNTNPNFSSQQTVGFVTPQVPISGFAQFSGSQYGFQHGMREFPIHNSPFGGRLNFSNVTAFDDSRFNAGASQNLVLNRQNPPRRTSRLHKSTRCGTGSHNQNEEDFENEDENEDENEDVEDSDSEE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0271L05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110099" stop="109224"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIQSFDTYINVNFYFYFLCIDMDPSNLYVHPGPVEHDVLKIQVYHRSEGIWNGSIKEERCCLYTSRGDIEFWQHLKYHPLHSRILQYFENCRFKGILDVGCVPYDSGLISALIERWRPETHTFHMRTGEATITLQDIEILFGMVVDGSPIILNGADSLRIIGRQEMIFQLTGWLPDTSCFSGVSRLSTYKLIEYIEGLEVINDNSTEHEVQQRFRLYLLWLCGGSIFPDKSNNKINLDILIDMRNLDLMSTQAWGSAALSYLYNCLCRASMKKSNEVCGFLSLVQVYIFFD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0271L05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109147" stop="108917"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWAWKRIIPLQPLPKPLRTNQFEALTALARKWTRRRNHQNEARTVIGVIRDVLDNLTDEQVFNIISILYFSYFILF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="123466" PGL_stop="124311"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123466" e_stop="123945"/>
            <exon e_start="124098" e_stop="124311"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.650" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="123466" e_stop="123945" e_length="480"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.650">
            <gDNA_intron_boundary i_start="123946" i_stop="124097" i_length="152"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="124098" e_stop="124311" e_length="214"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123466" stop="123945"/>
              <exon start="124098" stop="124311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327442" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAGGACCCCTCTTTCAAGATTTCCCAGATCATACAGTCTAACAAACATATCTTTTTTTTTTTGTCAACTAAGTAGTAATTAATCAGTTCTTGTATTTAAGGTCAAAACTGATTAATTATTGGTATTAATGGATAATTTCCATTCAATATTTCCTTTACAACCGGATGATGATGCGAATTATGATTCCCATCAACAACAGCTCATTTTTCCACATGAAACCTATACCAACCCTTGTAATTTCATATACCAACAAGATCTGGTAAATGATTTTGCTTCTTTTGATTCATTGGAGTTAAGAGACAACAATCTTACATTTAACAACAATACTAACAACAATCAGAAAGGGAAATCATGTGGCGTTGAGGATAAGAAGAAACACAAGAAAGTGATGCATAGAGAAATTGAAAGGCAAAGAAGACAAGAAATGTCTACTCTTTATGCTTCTCTTCGTCAACAACTTCCTCTTGAAAATATTAAG : GGGAAGCGTTCCACATCAGATCACATACTTGAGGCAGCGAATTACATAGAACAACTACAAAAGAATGTTAAGAATTTGGAAGAAAAGAGAGAAAAGTTGATGAAAGATTCAACTGGTTTAAGCAATGTTGATGGCATTAACAAAAGTGGAAGATCAACATCTAGACACTGCTCCCCACCTGCTATTGTGACAGTGAAAGAATGCTTGGATGGGA</gDNA_template>
            <first_frame> L  R  T  P  L  S  R  F  P  R  S  Y  S  L  T  N  I  S  F  F  F  C  Q  L  S  S  N  *  S  V  L  V  F  K  V  K  T  D  *  L  L  V  L  M  D  N  F  H  S  I  F  P  L  Q  P  D  D  D  A  N  Y  D  S  H  Q  Q  Q  L  I  F  P  H  E  T  Y  T  N  P  C  N  F  I  Y  Q  Q  D  L  V  N  D  F  A  S  F  D  S  L  E  L  R  D  N  N  L  T  F  N  N  N  T  N  N  N  Q  K  G  K  S  C  G  V  E  D  K  K  K  H  K  K  V  M  H  R  E  I  E  R  Q  R  R  Q  E  M  S  T  L  Y  A  S  L  R  Q  Q  L  P  L  E  N  I  K  :  G  K  R  S  T  S  D  H  I  L  E  A  A  N  Y  I  E  Q  L  Q  K  N  V  K  N  L  E  E  K  R  E  K  L  M  K  D  S  T  G  L  S  N  V  D  G  I  N  K  S  G  R  S  T  S  R  H  C  S  P  P  A  I  V  T  V  K  E  C  L  D  G  </first_frame>
            <second_frame>  *  G  P  L  F  Q  D  F  P  D  H  T  V  *  Q  T  Y  L  F  F  F  V  N  *  V  V  I  N  Q  F  L  Y  L  R  S  K  L  I  N  Y  W  Y  *  W  I  I  S  I  Q  Y  F  L  Y  N  R  M  M  M  R  I  M  I  P  I  N  N  S  S  F  F  H  M  K  P  I  P  T  L  V  I  S  Y  T  N  K  I  W  *  M  I  L  L  L  L  I  H  W  S  *  E  T  T  I  L  H  L  T  T  I  L  T  T  I  R  K  G  N  H  V  A  L  R  I  R  R  N  T  R  K  *  C  I  E  K  L  K  G  K  E  D  K  K  C  L  L  F  M  L  L  F  V  N  N  F  L  L  K  I  L  R :   G  S  V  P  H  Q  I  T  Y  L  R  Q  R  I  T  *  N  N  Y  K  R  M  L  R  I  W  K  K  R  E  K  S  *  *  K  I  Q  L  V  *  A  M  L  M  A  L  T  K  V  E  D  Q  H  L  D  T  A  P  H  L  L  L  *  Q  *  K  N  A  W  M  G </second_frame>
            <third_frame>   K  D  P  S  F  K  I  S  Q  I  I  Q  S  N  K  H  I  F  F  F  L  S  T  K  *  *  L  I  S  S  C  I  *  G  Q  N  *  L  I  I  G  I  N  G  *  F  P  F  N  I  S  F  T  T  G  *  *  C  E  L  *  F  P  S  T  T  A  H  F  S  T  *  N  L  Y  Q  P  L  *  F  H  I  P  T  R  S  G  K  *  F  C  F  F  *  F  I  G  V  K  R  Q  Q  S  Y  I  *  Q  Q  Y  *  Q  Q  S  E  R  E  I  M  W  R  *  G  *  E  E  T  Q  E  S  D  A  *  R  N  *  K  A  K  K  T  R  N  V  Y  S  L  C  F  S  S  S  T  T  S  S  *  K  Y  *   : G  E  A  F  H  I  R  S  H  T  *  G  S  E  L  H  R  T  T  T  K  E  C  *  E  F  G  R  K  E  R  K  V  D  E  R  F  N  W  F  K  Q  C  *  W  H  *  Q  K  W  K  I  N  I  *  T  L  L  P  T  C  Y  C  D  S  E  R  M  L  G  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0271L05.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123583" stop="123945"/>
                    <exon start="124098" stop="124310"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLVLMDNFHSIFPLQPDDDANYDSHQQQLIFPHETYTNPCNFIYQQDLVNDFASFDSLELRDNNLTFNNNTNNNQKGKSCGVEDKKKHKKVMHREIERQRRQEMSTLYASLRQQLPLENIKGKRSTSDHILEAANYIEQLQKNVKNLEEKREKLMKDSTGLSNVDGINKSGRSTSRHCSPPAIVTVKECLDG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 69 chains have been computed
$ 
$ memory statistics:
$ 180392 bytes spliced alignments in total
$ 15 spliced alignments have been stored
$ 12026 bytes was the average size of a spliced alignment
$ 17184 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1718 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 92 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 17:57:41
-->
