<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 17:38:04"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8118-2" ref_strand="+" ref_description="SGN-M8118-2 C2_At3g62360-2 [cosii_markers]">
      <seq>ctctgactcatggcccgcaaaacgtcaaacctcaagtgaaacttactgatgagggtggccatttttgctttgaggttcctcctggtgattatcgcttatctgcaatcccagctaaacttgagaacgctaaagagcttctattttctccttctcatattgatgtttcagtcaggagtccgatattggatgtcaaattctatcaggcacaagtaagtatacatggctctgttgtttgtaaggagaaatgtggttcttcagtttctttgactcttctgcgcctggatgggagaaataaagacgataagaagacaattggtttggcaaatgagagtaatgaatttttcttctcaaatgttctccctggtaaatacagggttgaggtaaaaaacaattatccaatagcatcatcaggacaagataaatggtgctgggagcagagttttatcaatttagaagttggcgctgaggatgttaaaggggtagattttgttcaaaaaggtttctgggtcaacataatctcaagccatgatgtggatggtttactgactcaatcagatggttctagaatgaacttgaacatcaagaagggttctcaacacgtgtgcgtagaatctccgggagtgcatgagttgagctttccaaattcatgtatttcttttgggagttcatctgtgatcattgacacatctaacctttctcctatctatttgaaaggcgagagctatcttttgaagggtcatgtccatgttgaatcaagctcatttagtagcattgagggtttgcctgagaatataccgttggacattttggacagtgatggttctgttgttgatggtctatcggcaagacgtgtgccttacggagttgatcaatcgagtgcagccatctatgaattttccatgtgggctagtcctggaggaaaatttacttttgttcctcgagatgcacgggatgatggagggaaaaaaatattattttatcccacacagcagcatgttgccgtgatggaagatggctgccaatcttcaattcctccttttgctggtcgacttgggatgtatatagaaggatcagtttctccccctctcaatgatgttgttgtcaaaataattgctgcaggagacagccaaagtgctccacttaagcaaggcgatttagcacttgaaactaccacagggacagatggcttatatgtcgcagggcctctatatgatgatataagttatactgttgaagcttcaaagacgggctaccatgtaaagcaagctggacctcattccttttcttgtcagaagctgggccaaatttcagtgcgtatatattctagagaagacaccaacgagccttttccgtcagttctcttatcattaagtggagaagatggttacaggaacaatacagtatcaggtgttggtgggattttcgtatttggcgactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5079" stop="12902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5379" g_stop="5452" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5453" i_stop="6919" i_length="1467">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6920" g_stop="7048" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="203" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7049" i_stop="7217" i_length="169">
            <donor d_prob="0.845" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7218" g_stop="7394" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="380" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7395" i_stop="9572" i_length="2178">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9573" g_stop="9776" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="584" r_length="204" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9777" i_stop="9863" i_length="87">
            <donor d_prob="0.931" d_score="0.94"/>
            <acceptor a_prob="0.899" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9864" g_stop="9977" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="698" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9978" i_stop="10064" i_length="87">
            <donor d_prob="0.472" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10065" g_stop="10315" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="949" r_length="251" r_score="0.968"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="10316" i_stop="11614" i_length="1299">
            <donor d_prob="0.945" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="11615" g_stop="11660" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="950" r_stop="995" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="11661" i_stop="11741" i_length="81">
            <donor d_prob="0.919" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="11742" g_stop="11990" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="996" r_stop="1244" r_length="249" r_score="0.984"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="11991" i_stop="12407" i_length="417">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="12408" g_stop="12602" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1245" r_stop="1439" r_length="195" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-M8118-2" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>1439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8118-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5379" e_stop="5452"/>
          <exon e_start="6920" e_stop="7048"/>
          <exon e_start="7218" e_stop="7394"/>
          <exon e_start="9573" e_stop="9776"/>
          <exon e_start="9864" e_stop="9977"/>
          <exon e_start="10065" e_stop="10315"/>
          <exon e_start="11615" e_stop="11660"/>
          <exon e_start="11742" e_stop="11990"/>
          <exon e_start="12408" e_stop="12602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGACTCATGGCCCACAAAACGTCAAACCTCAAGTGAAACTTACTGATGAGAGTGGCCATTTTTGCTTTGAGGTATGGCAGAGTGAATATTATTTTTACTTTTTTCTGCTTCTTGAATACTTTCCATCACTGGTTATAAGGGGCTGTCAAAAGTATAATGGCATGTATCTAACACATTAGCCCCGTTACGGGAAAGTATGATCTGTAGGATGCATCAATAATATACTTTTCCAGACTCCCAAGAGGGGGTGGGAGGATGCACAACAAGAAATCCATCATTTATTGGTGCTTGTTTATTAAGACACAACATTTCTTTATTTGGGTGGGTGGGGTGTTGTTGGAGGGAGCTCAGCATGCTGTCTTCAGAAGTTAATTTGATCAATAGTGATCTAGAAGAACCAACTGGTCAGTAACCAATGAGTAATAGGATAATTAACTTGAAGGAAATAGCTGAATCTTCTAATTTTGCCTCAAATCTAGTCTATATTCTGCTTTATTGTTTTGTATATAATAGAGTTGCTTAGCCACGTCTCTGTTTGTCTGTGTGTTAAAAGTATCTTTTGGCACGTGGGAACAATTTTTGTGTTAGAGAAGGTTGAGACAAGATTTTTGCGTTCTCCATTGCTATTTTTTTAATGTTAGGGAAGGATGAGACTTAAGGTTCTCCATATCTAGTATCTTGGGCTTAAGCTTTTAGGTGAAAGAGGACACTTTTCAACTTCATTGCTCAACTTTGTATTCTTGTATTTTTGTATAGAAGACGTTGTTTTTCCAATTTTAGTCTATCATCAAACATCATTTTTTGTTTTTTTTTATTCTTAGTAATTACATGAAAGTACTGCCAATCACCAATTCTATATTATTTTTAGTGACCAAGAAATCTCAAGGAGCCTGCCCCTTTGGCCAACCGCAACCCTCCAAATTCGGGAGTGAGATCCGCCCCTCTATCCTTCTCGTCTTAAATAATGGACTTAGCTTGCTTTAGTTTGCCTCCAACCACCAATTTCTTATTAGAAGATTGTTTAAGGATAACAAAAAGATCGTGGTCAGAGTGTTATTTCAAGAGGAATGTTGAAATTTTTTTCAAGAAGTTCCTTAGAATGACCAGGTTGTCAATAAGCAGGACCTCGTACCTCTTTGGCGGCAGAAGGGATGAGAAAATTTGATGATTGATTATTGTAGGTTTTGTTGTTTATACTGTTACTTCCTTGGCTAGTTTGGTGGTGATTTGGAACAGCAAAAGATAACAGGTATGATTGGTCAGAAGATAGAGATAGGTAACAAGAGATGTGTTGGGGCCAGCAGATATCCAATTTTTTTGAAGTTCTGTAAGTAGGTTTTTGTTCACCAGCTGTAAAAACTGATGTGTAAAATGGGGAAGATGTAATGGGTCTAGCTGGTAAAATGAAGAATAAAGGAGGAACTTGTAGCTTTGTGTAGAGTGGATTTTTTTATCATCATCCTCAGATGTAATGGAACTTAAAAACTGTCAATATTTTCTGTTTGGAACACTTAATGTTTTATCTCCATTTGCTGCAGGTTCCTCCTGGTGATTATCGCTTATCTGCAATCCCAGCAAAACTTGAGAACGCTAAAGAACTTCTATTTTCTCCTTCTCATATTGATGTTTCAGTCAGGAGTCCGATATTGGATGTCAAGTTCTATCAGGTATTTGAGTTATGTTATTAGAATTCAAACTAAGGACTGCTTTGAAGATATGCCAATTTTTTTCATGTCGTGTCAAACCAATTATCTAAGTTGCGGATATGGTAGTAAAGTCGGTCCATCTGAATTCAGATGAAATGTTCGTTGATCACTCCTTTTCTTATTTTTGAAGGCACAAGTAAGTATACATGGCTCCGTTGTTTGTAAGGAGAAATGTGGTTCTTCAGTTTCTTTGACTCTTCTGCGCCTGGATGGGAGAAATAAAGACGATAAGAAGACAATTGGTTTGGCAAATGAGAGTAATGAATTTTTCTTCTCAAATGTTCTCCCTGGTAAATACAGGGTTGAGGTAACACCCCCACCTATGGCCTTGGTTCTTCCTGTTTAGGACCCTTTGCATTTCTGTCTGTGTATTTACATCCCAATGTCTTTTCCTTTGCCTTTTATCACCCTTTGCATTTCTACATTTACATCCCAATGTCTTTCCTTTGCTTTTACCCCGCTTGTTATTAGCTAACTGTATCTGGTAACAGAAGGCTTGTGTTTTTATTTTGTTGTTAAAAATAAGTTAGTGTTTTGTGATTAAATAGAGGGGTGATTTTCTTTCTCGACACCACTGCTAGGCAGTCTGCAACACTCACAAACTTCAGCCTCACAATACAACACGAATCTGTCGAAGTATAGACCGTTTCTTTTAGGCAGCGTAGTGATTTGACAAACACAGAAAATGTACAGGAGCGAATCCCAACCTTAATTAATTTGAATATTCAACAAAGGAAGAAGCTTCACTGATTCACTAAGGCACAGAACACTCTCTGAATCCTTAGTTGAATTTTTGCCCCCATTTAAGATCTCTACCCAAGGCAGTTACAAACAGTTACAACTGCCCATGTGCTTGGTATATGCTTTGAAAAAAATCTTATCTGAACTTAACTAATTTACAACAGTCATATTCTAATAGACATAATACATTTCGAATTCAAATGTCTATGCCCATGTGCCTCACTCATGCCAATCATTTGCCTTAGCTGATATTGCGTGTACCCACACTTAGAATAATTCTGCCTGCTGCCAGCCTTAGTTTAATTTTATCATTTCTGCCAACTCATGCCAACACTTGTCCAGCTTTGTCTTGCCATCGTCAAGTCCCCACAGCCTTGCCTTGTCAAGCCAACAAACTTCCTTGCCTTGTCGATGCTACTGTTTGCATGTATGCCCCCATAGGTGCCATACGTCTGTCTTTGCCTTTGCACGTCCAAGCTGCCTTGCCAACACTCAAGCATCTTGAACACAATGCTGGACTTTAATACTTAGCCGCACAATTGCATTGTTTCCCCATGCCCATGCCAAGTCCGATGCACAAGTCCTTGCCATGCGCTCATGCCTCTACCGGCGTGCCCTCATCTAACAAACCACCCCCATCCCTTGAGCTCGATGCGCCTCATCGAGACTGTTTTGAGATAGTCATTGATTCGGTCATCAAATTGCCATAAATCCTTCGTCTTCTCCCAAACAACATCTGCTCCCACTCTTGCCTTTCCACTTTACCAAAAATTCAGTCTTGTTATTCTTCTTACTTGTGCCAACAACCTGGTGATCAAGGATCTCTTCTATCTCAGCATCAAACTATGACGGAATAGAAGGAGGTGTCCTCTTTGATCTGTTTCTATTCGGATCATCATTATCTGGGAAGTAAGGTTTCAAGAAACTCACATGGAAAGTGGGATGAATCTTTAACCTTTCAGCTTCAATTTGTGAGCAACCTCACCGACTTGTTGTACCACTTCAAATAGGCTGTTGTACTTGGGATCAATCCCCTATGCCGAATCTTACCCGCAATTTGCTTCCTGATATGGGGCGTGAGTTTCAGCAATACCTAGTCACGCACATTAACCTCTACTTCACGCGTCGCTGAGCCTTGCACAGGCTGTCTTGTGCCTCTGAAATCATTTTAGGTCTGTCCCTTGCAGGCCTGTAGCTGCTGGACATTTCCCTTGGTTCTTTGTTTTGGCAACATCTAATGCAGTCATGGGCTTTCTACCTAAAACAATCTCAAACAGACTTGTTTCTGTTGCTAATGTCTTGTGCAAATTGTCCGCCGCTGCCTCCTCACAAAGGAAACACCAATATATGCAAATAACCTTTCGTCTCCTGAGAATCTCTGTCATCAAGATTACCCCTTTAGTAGATTATCACATGAAGAAGCACACCTTCCTTAAAACCTTAGGAATCCAACCCAAACCATGTGGAAAACTACTATCCCATTTGTAATTTTAAGCTCTTAATGTCCAAACCTCTGTTTTCCTGCTTTGAAGTAACAATATCCCATTTGACCATTGCAAGCCTTACATTCTTGTCTATTTCTGCATCAAGGAGTGCATGTACTCTATTCATGTTTGATTTCCTAAAGAAATCATTGTGTCCAGAAGTAGTCTAAGCTAAAGTTGCAGTATCTATTGCATCCGTTAATCTATTCCTTCAGTTAGTTGGCAATGCATTATGTCGTTTCATTTGATCTTATTTTCAGGTAAAAAACAATTATCCAATAGCATCATCAGGACAAGATAAATGGTGCTGGGAGCAGAGTTTTATTGATTTAGAAGTTGGCGCTGAGGATGTTAAAGGGGTAGATTTTGTTCAAAAAGGTTTCTGGGTCAACATAGTCTCAAGCCATGATGTGGAGGGCTTACTGACTCAATCAGATGGTTCTGGAATGAACTTGAACATCAAGGTTGGTTTAGTCCACCTCAAAAAGTTCTCTTAGATCTTCTAACTAACACGAGAAGCTCATTTTCTTTTTCTGGCTCTTGAATTGCAGAAGGGTTCTCAACACGTGTGCGTAGAATCTCCGGGAGTGCATGAGCTGAGCTTTCCAAATTCATGTATTTCTTTTGGGAGTTCATCTGTGATCATTGACACATCTAACCTTTCTGTATGATCCTTTTGGAGTTGGAATTTTTTCTATTGAACTAGTTCATTTATCATGCATGTCTTCTCATATACTTTCTTCTGTTTGTAGCCTATCTATTTGAAAGGCGAGAGCTATCTTTTGAAGGGTCATGTCCATGTTGAATCAAGCTCGTTTAGTAGCGTTGAGGGCTTGCCTGAGAATATACCGTTGGACATTTTGGACAGTGAAGGTTCTGTTGTTGATGGTCTATTGGCAAGACGTGTGCCTTACGGAGTTGATCAATCGAGTGCAGCCATCTACGAATTTTCCATGTGGGCTAGTCCGGGAGGAAAATTTACTTTTATTCCTCGAGATGCACGGTGTGTGAATTATATTTTGATTTTATTCTTTTTATGCTTTCTGCCACTCGTTCTCTCTGTCTCATTATTCTTTTTATGCTCTTCTGCTACTCGTTCTCTCTCTGTCTCTCATTTTGGTCTTTCCTTCAAAACAAAAATACATAGATTGATAAGGAACTTTAAGGAATATGACCTTTTGCCTGTGATAGATGTTCATGTATTGATTGTTCTAGTGTGATTGTTTTTATTCCTTAAGGGAGAGAAAGTGTAACCTTTTGTTGTAATTCAATCTGCCTTTGTTTAGCTATATATCTATTTTATGGATTCTTTGTATCCGAGTCAAGTAACCTGCTTAGTTTGAATGAGTTGTATAGACAATAAAGCCTTCAGACGGACTTGACATGATAAAGAACCTTAATTTGCCTGATTCTACAACAACATACCCAGTGAAATCTCACAAAATGGTGTCTGAAGAGGGTAGTGTACGCAGACCTTACCATTACCTCATGGAGGTAAAGAGGCTGTTTCTGAAAGACCTTTGACTCAAGTGCATCCAACCCAAGTAAAAAAAGAAGAAAACAGTGGAAGAAAGGATAGCGGTTAATAAGAAAAGCAGTGTAAAGTCTACAAGAGAAAAACAACATCAAAATAGTGTGATAATCGAAATACACTAAACTACATATGTCAAGGACACAGGGATCAACTAGTCCTACAACAGGCACTAGGGCTACGTAAGGCAAGATAACACTCTACTCCTTCCTATCTATGGTCATGTCCTCGGTAATATGAAGGTTCACCATGTGTTGTCTAATCAGCTCTCCCCAATACATTTTCAGCCTACTCCAACCCCTCCGCATCCCCTACACGCACCTCCTCGCACATGTCCAAACCATCTGTCTTGCTTCCTTCATCTTGTCCACCACAGGGGCCATCTCACCTTCTCCCGGATAACCTCATACCTGATCTTGTGAGTCCTAGTGTGCCCACACATCCATCTCAACATCCTCATCTCTGCAACATGTATCTTCTCAACATCCTCCTCTGTACCTTCATCTGCCTGATTCTGACTTTCCAAAATATATGCTCACTTTTTTAGCTGTATTTTTCGAGCTTGTTTCATGCACTTTGTAGTGTGATGCACATGGTATTAGATGGCAGAATGTTTGTAATTCAAAGATTAGAGTAAATGTGTTTCCTGACATGCTCAAATGCTTTGAGACATTGCCTTGCACACAATCAAGAATAGATGTATTTTTAAATGCTACTTTGTTATAATTCCTCAGCTTTTCATGCATTTCTAATTGTTGTTTCATGTTTCAGGGATGATGGCGGGAAAAAAATATTATTTTATCCCACACAGCAGCATGTATGTGGAATTGAAAGTTTTAATCAAAGTAGTTTTTGTGTATCTACTCTTAGTTTTGAAGTCTTTCTTTGCTTTCTCTAGGTTGCTGTGATGGAAGATGGCTGCCAATCTTCAATTCCTCCTTTTGCTGGTCGACTTGGGATGTATATAGAAGGATCAGTTTCTCCCCCTCTCAATGATGTTGTTGTCAAAATAATTGCTACAGGAGACAGCCAAAGTGCTCCACTTAAGCAAGGCGATTTAGCACTTCAAACTACCACAGGGACCGATGGCTTATATGTCGCAGGGCCTCTATATGATGATATAAGTTATACTGTTGAAGCTTCAAAGGTTTGAACGATCTTAACATTATAATAACTGCCCGAGCATTTCTTGTTTCTCCATAATGCTTTGTTGAGCAGATCAATAGCATCTCCAGATTATTAACAGTCTCTACATCCCTTTTGAGTTACGTTATCATTTTTCAATGATATATGGTGCATTTGTACTAATGGTATGGATTTCTTCGTATATGTGCATTGCTGGCCAAATAAGACTAGAAGTATGAATCCGGTGGATTATCATGAGACTGCTAGCAAATTTGTTCTTTCTTGTTGCTATAGTTTTCCTTGATTGCATTCAATCGTATGTTATCAGCTGTTCTTATTGGAGCTTATTTGCTACTAGGGTTCTGTGGACTCGACTAAAGTATAAGCTTTCTTTTCTCTTTCTGGTGGATCTACCTAATATTTCTTTCTTTATTTGCAGCCGGGTTACCATGTAAAGCAAGCTGGACCTCATTCCTTTTCTTGTCAGAAGCTGGGCCAAATTTCAGTGCGTATATATTCTAGAGAAGACGCCAACGAGCCTTTTCCATCAGTTCTCTTATCATTAAGTGGAGAAGATGGTTACAGGAACAATACAGTATCAGGTGTTGGTGGGATTTTTGTATTTGGGGACTTA</genome_strand>
        <mrna_strand>CTCTGACTCATGGCCCGCAAAACGTCAAACCTCAAGTGAAACTTACTGATGAGGGTGGCCATTTTTGCTTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCCTGGTGATTATCGCTTATCTGCAATCCCAGCTAAACTTGAGAACGCTAAAGAGCTTCTATTTTCTCCTTCTCATATTGATGTTTCAGTCAGGAGTCCGATATTGGATGTCAAATTCTATCAG.........................................................................................................................................................................GCACAAGTAAGTATACATGGCTCTGTTGTTTGTAAGGAGAAATGTGGTTCTTCAGTTTCTTTGACTCTTCTGCGCCTGGATGGGAGAAATAAAGACGATAAGAAGACAATTGGTTTGGCAAATGAGAGTAATGAATTTTTCTTCTCAAATGTTCTCCCTGGTAAATACAGGGTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAACAATTATCCAATAGCATCATCAGGACAAGATAAATGGTGCTGGGAGCAGAGTTTTATCAATTTAGAAGTTGGCGCTGAGGATGTTAAAGGGGTAGATTTTGTTCAAAAAGGTTTCTGGGTCAACATAATCTCAAGCCATGATGTGGATGGTTTACTGACTCAATCAGATGGTTCTAGAATGAACTTGAACATCAAG.......................................................................................AAGGGTTCTCAACACGTGTGCGTAGAATCTCCGGGAGTGCATGAGTTGAGCTTTCCAAATTCATGTATTTCTTTTGGGAGTTCATCTGTGATCATTGACACATCTAACCTTTCT.......................................................................................CCTATCTATTTGAAAGGCGAGAGCTATCTTTTGAAGGGTCATGTCCATGTTGAATCAAGCTCATTTAGTAGCATTGAGGGTTTGCCTGAGAATATACCGTTGGACATTTTGGACAGTGATGGTTCTGTTGTTGATGGTCTATCGGCAAGACGTGTGCCTTACGGAGTTGATCAATCGAGTGCAGCCATCTATGAATTTTCCATGTGGGCTAGTCCTGGAGGAAAATTTACTTTTGTTCCTCGAGATGCACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATGGAGGGAAAAAAATATTATTTTATCCCACACAGCAGCAT.................................................................................GTTGCCGTGATGGAAGATGGCTGCCAATCTTCAATTCCTCCTTTTGCTGGTCGACTTGGGATGTATATAGAAGGATCAGTTTCTCCCCCTCTCAATGATGTTGTTGTCAAAATAATTGCTGCAGGAGACAGCCAAAGTGCTCCACTTAAGCAAGGCGATTTAGCACTTGAAACTACCACAGGGACAGATGGCTTATATGTCGCAGGGCCTCTATATGATGATATAAGTTATACTGTTGAAGCTTCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGCTACCATGTAAAGCAAGCTGGACCTCATTCCTTTTCTTGTCAGAAGCTGGGCCAAATTTCAGTGCGTATATATTCTAGAGAAGACACCAACGAGCCTTTTCCGTCAGTTCTCTTATCATTAAGTGGAGAAGATGGTTACAGGAACAATACAGTATCAGGTGTTGGTGGGATTTTCGTATTTGGCGACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8118" ref_strand="+" ref_description="SGN-M8118 C2_At3g62360 [cosii_markers]">
      <seq>tgagctttccaaattcatgtatttcttttgggagtgcatctgtgatcattgacacatctaacctttctcctatctatttgaaaggcgagagctatcttttgaagggtcatgtccatgttgaatcaagctcgtttagtagcgttgagggcttgcctgagaatataccgttggacattttggacagtgaaggttctgttgttgatggtctattggcaagacgtgtgccttacggagttgatcaatcgagtgcagccatctacgaattttccatgtgggctagtccgggaggaaaatttacttttattcctcgagatgcacgggatgatggcgggaaaaaaatattattttatcccacacagcagcatgttgctgtgatggaagatggctgccaatcttcaattcctccttttgctggtcgacttgggatgtatatagaaggatcagtttctccccctctcaatgatgttgttgtcaaaataattgctacaggagacagccaaagtgctccacttaagcaaggcgatttagcacttcaaactaccacagggaccgatggcttatatgtcgcagggcctctatatgatgatataagttatactgttgaagcttcaaagccgggttaccatgtaaagcaagctggacctcattccttttcttgtcagaagctgggccaaatttcagtgcgtatatattctagagaagacgccaacgagccttttccatcagttctcttatcattaagtggagaagatggttacaggaacaatacagtatcaggtgttggtgggatttttgtatttggggacttatttccagggagtttctatctccgacccttgcttaaggaatatgctttctcccctccagcagaggcaatcgaacttggctctggagagtcaaaggaagtcgtctttcatgcaacgcgtgttgcatacagtgccatgggagtagttaaactcttgtctggtcagccaaaagaaggtgtttcagtagaagctcgatccgagtcaaaaggcttgtatgaggagacagtaacagattcaacaggattttaccgtttgagaggactcctacccgatactacttatgtgattaaagtagcaaggaaagttgcatctggtggagctatgattgagcgtgcatctcctgagtttctgaccgttcaggtgaacgctgaggactctaggggattagattttgtagtatttgaacagccagagaggacaattataagtggccatgttgaagggcntnnaatcaaagagttcaactcacatctccatgtggagatcaagtctgctgctgattcgtcaaagattgagtacacctctccactttccctctcaaacttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9610" stop="17509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9910" g_stop="9977" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9978" i_stop="10064" i_length="87">
            <donor d_prob="0.472" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10065" g_stop="10315" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="319" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10316" i_stop="11614" i_length="1299">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11615" g_stop="11660" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="365" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11661" i_stop="11741" i_length="81">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11742" g_stop="11990" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="614" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11991" i_stop="12407" i_length="417">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12408" g_stop="12638" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="845" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12639" i_stop="14219" i_length="1581">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14220" g_stop="14311" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="846" r_stop="937" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14312" i_stop="15779" i_length="1468">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15780" g_stop="16008" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="938" r_stop="1166" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16009" i_stop="17021" i_length="1013">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17022" g_stop="17209" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1167" r_stop="1354" r_length="188" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-M8118" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9910" e_stop="9977"/>
          <exon e_start="10065" e_stop="10315"/>
          <exon e_start="11615" e_stop="11660"/>
          <exon e_start="11742" e_stop="11990"/>
          <exon e_start="12408" e_stop="12638"/>
          <exon e_start="14220" e_stop="14311"/>
          <exon e_start="15780" e_stop="16008"/>
          <exon e_start="17022" e_stop="17209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTTTCCAAATTCATGTATTTCTTTTGGGAGTTCATCTGTGATCATTGACACATCTAACCTTTCTGTATGATCCTTTTGGAGTTGGAATTTTTTCTATTGAACTAGTTCATTTATCATGCATGTCTTCTCATATACTTTCTTCTGTTTGTAGCCTATCTATTTGAAAGGCGAGAGCTATCTTTTGAAGGGTCATGTCCATGTTGAATCAAGCTCGTTTAGTAGCGTTGAGGGCTTGCCTGAGAATATACCGTTGGACATTTTGGACAGTGAAGGTTCTGTTGTTGATGGTCTATTGGCAAGACGTGTGCCTTACGGAGTTGATCAATCGAGTGCAGCCATCTACGAATTTTCCATGTGGGCTAGTCCGGGAGGAAAATTTACTTTTATTCCTCGAGATGCACGGTGTGTGAATTATATTTTGATTTTATTCTTTTTATGCTTTCTGCCACTCGTTCTCTCTGTCTCATTATTCTTTTTATGCTCTTCTGCTACTCGTTCTCTCTCTGTCTCTCATTTTGGTCTTTCCTTCAAAACAAAAATACATAGATTGATAAGGAACTTTAAGGAATATGACCTTTTGCCTGTGATAGATGTTCATGTATTGATTGTTCTAGTGTGATTGTTTTTATTCCTTAAGGGAGAGAAAGTGTAACCTTTTGTTGTAATTCAATCTGCCTTTGTTTAGCTATATATCTATTTTATGGATTCTTTGTATCCGAGTCAAGTAACCTGCTTAGTTTGAATGAGTTGTATAGACAATAAAGCCTTCAGACGGACTTGACATGATAAAGAACCTTAATTTGCCTGATTCTACAACAACATACCCAGTGAAATCTCACAAAATGGTGTCTGAAGAGGGTAGTGTACGCAGACCTTACCATTACCTCATGGAGGTAAAGAGGCTGTTTCTGAAAGACCTTTGACTCAAGTGCATCCAACCCAAGTAAAAAAAGAAGAAAACAGTGGAAGAAAGGATAGCGGTTAATAAGAAAAGCAGTGTAAAGTCTACAAGAGAAAAACAACATCAAAATAGTGTGATAATCGAAATACACTAAACTACATATGTCAAGGACACAGGGATCAACTAGTCCTACAACAGGCACTAGGGCTACGTAAGGCAAGATAACACTCTACTCCTTCCTATCTATGGTCATGTCCTCGGTAATATGAAGGTTCACCATGTGTTGTCTAATCAGCTCTCCCCAATACATTTTCAGCCTACTCCAACCCCTCCGCATCCCCTACACGCACCTCCTCGCACATGTCCAAACCATCTGTCTTGCTTCCTTCATCTTGTCCACCACAGGGGCCATCTCACCTTCTCCCGGATAACCTCATACCTGATCTTGTGAGTCCTAGTGTGCCCACACATCCATCTCAACATCCTCATCTCTGCAACATGTATCTTCTCAACATCCTCCTCTGTACCTTCATCTGCCTGATTCTGACTTTCCAAAATATATGCTCACTTTTTTAGCTGTATTTTTCGAGCTTGTTTCATGCACTTTGTAGTGTGATGCACATGGTATTAGATGGCAGAATGTTTGTAATTCAAAGATTAGAGTAAATGTGTTTCCTGACATGCTCAAATGCTTTGAGACATTGCCTTGCACACAATCAAGAATAGATGTATTTTTAAATGCTACTTTGTTATAATTCCTCAGCTTTTCATGCATTTCTAATTGTTGTTTCATGTTTCAGGGATGATGGCGGGAAAAAAATATTATTTTATCCCACACAGCAGCATGTATGTGGAATTGAAAGTTTTAATCAAAGTAGTTTTTGTGTATCTACTCTTAGTTTTGAAGTCTTTCTTTGCTTTCTCTAGGTTGCTGTGATGGAAGATGGCTGCCAATCTTCAATTCCTCCTTTTGCTGGTCGACTTGGGATGTATATAGAAGGATCAGTTTCTCCCCCTCTCAATGATGTTGTTGTCAAAATAATTGCTACAGGAGACAGCCAAAGTGCTCCACTTAAGCAAGGCGATTTAGCACTTCAAACTACCACAGGGACCGATGGCTTATATGTCGCAGGGCCTCTATATGATGATATAAGTTATACTGTTGAAGCTTCAAAGGTTTGAACGATCTTAACATTATAATAACTGCCCGAGCATTTCTTGTTTCTCCATAATGCTTTGTTGAGCAGATCAATAGCATCTCCAGATTATTAACAGTCTCTACATCCCTTTTGAGTTACGTTATCATTTTTCAATGATATATGGTGCATTTGTACTAATGGTATGGATTTCTTCGTATATGTGCATTGCTGGCCAAATAAGACTAGAAGTATGAATCCGGTGGATTATCATGAGACTGCTAGCAAATTTGTTCTTTCTTGTTGCTATAGTTTTCCTTGATTGCATTCAATCGTATGTTATCAGCTGTTCTTATTGGAGCTTATTTGCTACTAGGGTTCTGTGGACTCGACTAAAGTATAAGCTTTCTTTTCTCTTTCTGGTGGATCTACCTAATATTTCTTTCTTTATTTGCAGCCGGGTTACCATGTAAAGCAAGCTGGACCTCATTCCTTTTCTTGTCAGAAGCTGGGCCAAATTTCAGTGCGTATATATTCTAGAGAAGACGCCAACGAGCCTTTTCCATCAGTTCTCTTATCATTAAGTGGAGAAGATGGTTACAGGAACAATACAGTATCAGGTGTTGGTGGGATTTTTGTATTTGGGGACTTATTTCCAGGGAGTTTCTATCTCCGACCCTTGCTTAAGGTATTTATTGTTCCCTAATCTTAGGCTTTTATGACCATCTTGGGATATAGATGTTGGTTTATCTCTTATCTTGATAAGAATTTCTTGGGGACCTAGACAATGATATCAAGATAAGAGATCTGTACATTACGAAATTTGCTAGACCATTGAGCAGCAGCTGTTGCTTTACAGCCTATATGTAGTTCTTTCTATTACAAACCAATTTGCCTTTTATTTAATTTAATTATATGATACTGTGGACATATTATTGTCGAAGGGGAGCCTTGGCGTAACTGGTAAAGTTGCTGCTATGTGACCAGGAGGTCACAGGTTCGAGCTGTGAAAACTGCATCTTACAGAAATGCAGGAAGGCTGTGTACAATGTACCCTTGTGCTCCAGCCCTTCCCTGGACCTCTTGCATAGCGGGGGCTTAGTGTATAGGGCTACCCCTTTTTACCATGAACATATTATTGTCATTATGGAACAGTATCCTGTAGCACACTGTGAATTTGTATTGTAATCTTGAACATGATTATTTTTCGTAACTATCAAGAAACATGATATGTTTGATTGTTTTCAAAGAACCCTAATTTTGCTTTCCTTTGTGTTTTTTTTTGAAACTGACAATATTCTTCAGCATTGAGGATGTGCTGGCCATCATCATAAGAATTACAGATTCCCTATCAGATCTATAATTTATTCAGTATCCTCTATACATAATTGTTTACACCAAAAAAGTAGATATACAATACAATTCCATTTTACTGTGTGAATGGAATTGGGCCTATGACCAGTGTTATCAAAGGCGCGCTTTAAGCGCGCTTAAGCCCTGAAGCTATGCTCAAAACATGTTGAGCGCTTCGCCTCATGTGCGCTTCAGTGTCGTCATCAAGGTTTTAAGACAAACTTTCCTTGCCAATTGGCCTATTATAAAGAAGTGACACTAAACAATTGATATTTCACTTTATCACAAATATTTTTCATTTTCTTTGGTCATAAATGTGCCATTCATGTTTATAATTATAAGTCTTGGACTAAACATATATATTTGTATTTTTTTCTCCCTTTGCGCCTTTTTTCATTAAAGCCCACACTTTATTTGCGCTTAAAGCCCCCAAGGACCTTAGAGCTTTTTTGCGCTTTTCACCTTTGATAACACTGGGCCTATCTTTAAAACATCTGGCATTTCTCTCCTCTATACTGCCCACCATATATATGAAGGAATAAGTCTCCACCATATGTTCTAGTTCATTAACAATAGTTTCTGCTAAGTGCTAGAGAACAGATAAATTTAAGTGATCTGTACTAAATATATATGTTTACTGATCTGTTAACTCAGAGAACAACAGCTCAGTTGTTATGTACCTCTTAGGTAAAAATAATCGATTTGAAGTTAAATTTTTGTTATTCTTTTCATGGGTACAGATGTAACCCTAGTAAAATGCAAGCTACGTTAGATAGACGAGTCTTCTCATTCCCTTCCCATGAACCAGCGCAAGTGACGTGGGATTTGTTTGTGGATGCTTTCAATATTTTACAACATACATGTTACAATTATAATAGTTTCTCTAAAGAGGGAATGTTTGCTAATGTTTGCGTAGGAATATGCTTTCTCCCCTCCAGCAGAGGCAATCGAACTTGGCTCTGGAGAGTCAAAGGAAGTCGTCTTTCATGCAACGCGTGTTGCATACAGGTATATCTACACATAAATATATATAAGTGGAATGTGCTGATGCCCGTGAGTTGTGTGAGGTCTTTGATTATTAGAAACATGAGCACTCCAGTTCGGTGCTTTTATCCAATCAATTACCTTTAAACATGAAAACATTTTGCCCCCAGGGCTTTGGTCTAAGGGTTAGAGCTCAGTGCATGTGGGTTAGGTGCATGTTATGGATTTGAATTTTTTCACAGACGAATGCCTGGTATTTAAGTGGAGAAGGGTAGAGAAGCAAACGCATTGCCCATCGAGTTTTAAACCATGCGGCATTGGCCCTTGGGAATTCCTCAGTTGTAAAAAGAAAGTTCATAGCTTTTGTTAAAGAATAAATGACGGGGCATGCAATGACATGAGAAATATGTACTTTTTTTTCATTTAATGGTCTAGTGTATTTTGAACTCATCCAATTTACCGAATAAACACTAGGAAATATTTGCATTATACGTTAACGCTAATAGATGCTTTTCTTGACATTATAATACAGTAATATATATTAGTCCTTCATATCCTCTCTCTTCTTTTCTCAATTTGTCTATCCTTTATAATGTCCGTCGATGGAGTGACATGCTGGTGACCCAGCGAGGACATACGAAGAACTAACAAGAAAAAAACAACAAAAATAGAAATGGTGAAAGGTTTGGCAGGTATCATATTAGATATGGTGCCCTAACTTGTTAGTTGAGAATCGGTTGTCTGTTTATCCTTTTAAGTTGAACCTTAACTGTTGGTTGAATATATTGATAACCACTTAAACTTGCCTGAATTTATTTAGACAGTTTAAATTATGGTGTATTTCAATTGAGCACTTAAAGCACATGATAAATTGTCCCTATTAGATACTCCGGTTCACATTTTGATTTTTTTATGCATGTTTTCAAGCGCCCATTATGCCTACTTCAGTTATACACATCAACATCAATTGGAACTGGCCTGAACTTTTATGGCTTATTGACCCTATGCATATAATTAAATGATATGGTATATTTTGAGTGATTAACTTGGCATAATAGAGGCTTGAGAATATGCACAAAAGCTTTTCTACAAATTTGAGTCAAAAGTGTCCAATAGAAATACTTTGTCACGTGTTCTGGTGCTCAACTGAAACATGTTGTAGTTCAAATGTCTAAATGATATTTACTGGCAAGCTTAAGGGGCTATTGATGTATTCTGCCTTTGTTGTTAGTTATTTGATGAAGGGAATTTGTTTTAGGTACGCTTTGCTACTTCTCTAATTACCATATGACAAAATAAGCTCAAGACCTATGAGAACTCTTATGGAGTCTCTACAAGCAAGAAGAGAAATTTGAGTTCTTGCTGATATCAGTTCACATTTAATAACAATTTTCACTTAGGTGGATCGGCTAGGATTTGTTCATTATGACATGCCATTTGCAGCATCTTTACCAGTTCTTGTTGGACTCAGATGGTTTTAACTTCCTTACAGTGCCATGGGAGTAGTTAAACTCTTGTCTGGTCAGCCAAAAGAAGGTGTTTCAGTAGAAGCTCGATCCGAGTCAAAAGGCTTGTATGAGGAGACAGTAACAGATTCAACAGGATTTTACCGTTTGAGAGGACTCCTACCCGATACTACTTATGTGATTAAAGTAGCAAGGAAAGTTGCATCTGGTGGAGCTATGATTGAGCGTGCATCTCCTGAGTTTCTGACCGTTCAGGTTGGTACACTTCATGTTGCCATTTTTCCTTTAATGTTCATGAGTGAATAGGAATCATGAACTTGGTTATCCTTTCGAAATTGTTCTTGTGTTGATCTTTGAACTGAAAGGAATTTAAATCATATATATACATTCCGCAAAGGGCATGCTAGAGGAATCAGTTAGAAGTGTAAGAATAGTGGGGTAAATATGGAGTAGCAACTTTCCTTGCTTCTTTAAGCACAAACTGGACAATGCCAGAACACACAGCAGACCTGCTTAGTTGCTGGGTGAGGAGAGGGGGTAGTAAGAACCAGCAAAAATTGTGGAACATGATACCTTCTTGTATATGGTGGAGTATTTGGAGAGAAGAAATAAGAGGTGTCTTGAAAATACTGCAGAATCAATGCAAAAGCTTAAATGGCATTGTATGAAGACTTTTTTCTTTTTTTTTTTGCGTAAAGAAGAGGATATAGAGGATGCTCGACAGATTTTAAACTTTTTTTCTTCTTTATAAGTTTAGTCACCGCTTTCTTGATTTGTTTTTTTTTTGGATCTTTGATGTAAATCTTTTTGGTGGTTGCCAGCATACCGTATTGCTGAGGAATACAACTTTACCTTTATCAGAATAAAATAAAACATGGAGAATCTTATTATTGTTGGTTTGCACCAGGAATAGCTTTTTTTTAAAAAAAAAAAATTCACCCAGAATTGCTTGTACTTCTTTAGTCTTCTTAAAGATGAACTAACCAATATGAGGAAGCACTCCACTGAATGGGTTTTAGGATAAGTAGAAGTAAGAATATATACATTGCAACTTTTATTACACGCTTTTGCCAAGATTCTAGCTCTATGGACTTCTACATCATGTCTGTGTATGTCTAGATGTTCTGTGTGAGACAACAAAGTTCCTATTTTGTTTTAGTTATGGTTAAAATACGAGACATAGTTTGTAAATTTCATCGAATCTGTCCCTTTAAAGGCACAGTTGTTTGACATATGTTTTGCTTGTGCTAACTTCATATACCTTGCAGGTGAACGCTGAGGACTCTAGGGGATTAGATTTTGTAGTATTTGAACAGCCAGAGAGGACAATTATAAGTGGCCATGTTGAAGGGCATAAAATCAAAGAGTTCAACTCACATCTCCATGTGGAGATCAAGTCTGCTGCTGATCCGTCAAAGATTGAGTACAACTCTCCACTTCCCCTCTCAAACTTTTT</genome_strand>
        <mrna_strand>TGAGCTTTCCAAATTCATGTATTTCTTTTGGGAGTGCATCTGTGATCATTGACACATCTAACCTTTCT.......................................................................................CCTATCTATTTGAAAGGCGAGAGCTATCTTTTGAAGGGTCATGTCCATGTTGAATCAAGCTCGTTTAGTAGCGTTGAGGGCTTGCCTGAGAATATACCGTTGGACATTTTGGACAGTGAAGGTTCTGTTGTTGATGGTCTATTGGCAAGACGTGTGCCTTACGGAGTTGATCAATCGAGTGCAGCCATCTACGAATTTTCCATGTGGGCTAGTCCGGGAGGAAAATTTACTTTTATTCCTCGAGATGCACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATGGCGGGAAAAAAATATTATTTTATCCCACACAGCAGCAT.................................................................................GTTGCTGTGATGGAAGATGGCTGCCAATCTTCAATTCCTCCTTTTGCTGGTCGACTTGGGATGTATATAGAAGGATCAGTTTCTCCCCCTCTCAATGATGTTGTTGTCAAAATAATTGCTACAGGAGACAGCCAAAGTGCTCCACTTAAGCAAGGCGATTTAGCACTTCAAACTACCACAGGGACCGATGGCTTATATGTCGCAGGGCCTCTATATGATGATATAAGTTATACTGTTGAAGCTTCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGGTTACCATGTAAAGCAAGCTGGACCTCATTCCTTTTCTTGTCAGAAGCTGGGCCAAATTTCAGTGCGTATATATTCTAGAGAAGACGCCAACGAGCCTTTTCCATCAGTTCTCTTATCATTAAGTGGAGAAGATGGTTACAGGAACAATACAGTATCAGGTGTTGGTGGGATTTTTGTATTTGGGGACTTATTTCCAGGGAGTTTCTATCTCCGACCCTTGCTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATGCTTTCTCCCCTCCAGCAGAGGCAATCGAACTTGGCTCTGGAGAGTCAAAGGAAGTCGTCTTTCATGCAACGCGTGTTGCATACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATGGGAGTAGTTAAACTCTTGTCTGGTCAGCCAAAAGAAGGTGTTTCAGTAGAAGCTCGATCCGAGTCAAAAGGCTTGTATGAGGAGACAGTAACAGATTCAACAGGATTTTACCGTTTGAGAGGACTCCTACCCGATACTACTTATGTGATTAAAGTAGCAAGGAAAGTTGCATCTGGTGGAGCTATGATTGAGCGTGCATCTCCTGAGTTTCTGACCGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACGCTGAGGACTCTAGGGGATTAGATTTTGTAGTATTTGAACAGCCAGAGAGGACAATTATAAGTGGCCATGTTGAAGGGCNTNNAATCAAAGAGTTCAACTCACATCTCCATGTGGAGATCAAGTCTGCTGCTGATTCGTCAAAGATTGAGTACACCTCTCCACTTTCCCTCTCAAACTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M3090" ref_strand="+" ref_description="SGN-M3090 cLET-2-H1 [est_clones]">
      <seq>ttgcaaattcaaaatatcttcttcttcttcaccctaacacagagcaaataaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccaaagtagttccggataagaagctatctgatttagttgcggaaagggttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatccgatgttctggagaattattgcaaggataatccacaaactgatgaatgccgcacttacgataattaattatgatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87593" stop="88631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87882" g_stop="88331" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-M3090" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M3090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87882" e_stop="88331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAATAAAAAAATATCTTCTTCTTCTTCACCCTAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGA</genome_strand>
        <mrna_strand>TTGCAAATTCAAAA-TATCTTCTTCTTCTTCACCCTAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAAAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGGGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCCGATGTTCTGGAGAATTATTGCAAGGATAATCCACAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5379" PGL_stop="17209"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5379" e_stop="5452"/>
            <exon e_start="6920" e_stop="7048"/>
            <exon e_start="7218" e_stop="7394"/>
            <exon e_start="9573" e_stop="9776"/>
            <exon e_start="9864" e_stop="9977"/>
            <exon e_start="10065" e_stop="10315"/>
            <exon e_start="11615" e_stop="11660"/>
            <exon e_start="11742" e_stop="11990"/>
            <exon e_start="12408" e_stop="12638"/>
            <exon e_start="14220" e_stop="14311"/>
            <exon e_start="15780" e_stop="16008"/>
            <exon e_start="17022" e_stop="17209"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.973"/>
          <exon-intron don_prob="0.845" acc_prob="0.956" e_score="0.977"/>
          <exon-intron don_prob="0.806" acc_prob="0.995" e_score="0.994"/>
          <exon-intron don_prob="0.931" acc_prob="0.899" e_score="0.971"/>
          <exon-intron don_prob="0.472" acc_prob="0.953" e_score="0.991"/>
          <exon-intron don_prob="0.945" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="5379" e_stop="5452" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5453" i_stop="6919" i_length="1467"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="6920" e_stop="7048" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.845" acc_prob="0.956">
            <gDNA_intron_boundary i_start="7049" i_stop="7217" i_length="169"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="7218" e_stop="7394" e_length="177"/>
          </exon>
          <intron i_serial="3" don_prob="0.806" acc_prob="0.995">
            <gDNA_intron_boundary i_start="7395" i_stop="9572" i_length="2178"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="9573" e_stop="9776" e_length="204"/>
          </exon>
          <intron i_serial="4" don_prob="0.931" acc_prob="0.899">
            <gDNA_intron_boundary i_start="9777" i_stop="9863" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="9864" e_stop="9977" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.472" acc_prob="0.953">
            <gDNA_intron_boundary i_start="9978" i_stop="10064" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="10065" e_stop="10315" e_length="251"/>
          </exon>
          <intron i_serial="6" don_prob="0.945" acc_prob="0.999">
            <gDNA_intron_boundary i_start="10316" i_stop="11614" i_length="1299"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="11615" e_stop="11660" e_length="46"/>
          </exon>
          <intron i_serial="7" don_prob="0.919" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11661" i_stop="11741" i_length="81"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="11742" e_stop="11990" e_length="249"/>
          </exon>
          <intron i_serial="8" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11991" i_stop="12407" i_length="417"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="12408" e_stop="12638" e_length="231"/>
          </exon>
          <intron i_serial="9" don_prob="0.979" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12639" i_stop="14219" i_length="1581"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="14220" e_stop="14311" e_length="92"/>
          </exon>
          <intron i_serial="10" don_prob="0.981" acc_prob="0.952">
            <gDNA_intron_boundary i_start="14312" i_stop="15779" i_length="1468"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="15780" e_stop="16008" e_length="229"/>
          </exon>
          <intron i_serial="11" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16009" i_stop="17021" i_length="1013"/>
          </intron>
          <exon e_serial="12" e_score="0.968">
            <gDNA_exon_boundary e_start="17022" e_stop="17209" e_length="188"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5379" stop="5452"/>
              <exon start="6920" stop="7048"/>
              <exon start="7218" stop="7394"/>
              <exon start="9573" stop="9776"/>
              <exon start="9864" stop="9977"/>
              <exon start="10065" stop="10315"/>
              <exon start="11615" stop="11660"/>
              <exon start="11742" stop="11990"/>
              <exon start="12408" stop="12602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8118-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9910" stop="9977"/>
              <exon start="10065" stop="10315"/>
              <exon start="11615" stop="11660"/>
              <exon start="11742" stop="11990"/>
              <exon start="12408" stop="12638"/>
              <exon start="14220" stop="14311"/>
              <exon start="15780" stop="16008"/>
              <exon start="17022" stop="17209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8118" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTGACTCATGGCCCACAAAACGTCAAACCTCAAGTGAAACTTACTGATGAGAGTGGCCATTTTTGCTTTGAG : GTTCCTCCTGGTGATTATCGCTTATCTGCAATCCCAGCAAAACTTGAGAACGCTAAAGAACTTCTATTTTCTCCTTCTCATATTGATGTTTCAGTCAGGAGTCCGATATTGGATGTCAAGTTCTATCAG : GCACAAGTAAGTATACATGGCTCCGTTGTTTGTAAGGAGAAATGTGGTTCTTCAGTTTCTTTGACTCTTCTGCGCCTGGATGGGAGAAATAAAGACGATAAGAAGACAATTGGTTTGGCAAATGAGAGTAATGAATTTTTCTTCTCAAATGTTCTCCCTGGTAAATACAGGGTTGAG : GTAAAAAACAATTATCCAATAGCATCATCAGGACAAGATAAATGGTGCTGGGAGCAGAGTTTTATTGATTTAGAAGTTGGCGCTGAGGATGTTAAAGGGGTAGATTTTGTTCAAAAAGGTTTCTGGGTCAACATAGTCTCAAGCCATGATGTGGAGGGCTTACTGACTCAATCAGATGGTTCTGGAATGAACTTGAACATCAAG : AAGGGTTCTCAACACGTGTGCGTAGAATCTCCGGGAGTGCATGAGCTGAGCTTTCCAAATTCATGTATTTCTTTTGGGAGTTCATCTGTGATCATTGACACATCTAACCTTTCT : CCTATCTATTTGAAAGGCGAGAGCTATCTTTTGAAGGGTCATGTCCATGTTGAATCAAGCTCGTTTAGTAGCGTTGAGGGCTTGCCTGAGAATATACCGTTGGACATTTTGGACAGTGAAGGTTCTGTTGTTGATGGTCTATTGGCAAGACGTGTGCCTTACGGAGTTGATCAATCGAGTGCAGCCATCTACGAATTTTCCATGTGGGCTAGTCCGGGAGGAAAATTTACTTTTATTCCTCGAGATGCACG : GGATGATGGCGGGAAAAAAATATTATTTTATCCCACACAGCAGCAT : GTTGCTGTGATGGAAGATGGCTGCCAATCTTCAATTCCTCCTTTTGCTGGTCGACTTGGGATGTATATAGAAGGATCAGTTTCTCCCCCTCTCAATGATGTTGTTGTCAAAATAATTGCTACAGGAGACAGCCAAAGTGCTCCACTTAAGCAAGGCGATTTAGCACTTCAAACTACCACAGGGACCGATGGCTTATATGTCGCAGGGCCTCTATATGATGATATAAGTTATACTGTTGAAGCTTCAAAG : CCGGGTTACCATGTAAAGCAAGCTGGACCTCATTCCTTTTCTTGTCAGAAGCTGGGCCAAATTTCAGTGCGTATATATTCTAGAGAAGACGCCAACGAGCCTTTTCCATCAGTTCTCTTATCATTAAGTGGAGAAGATGGTTACAGGAACAATACAGTATCAGGTGTTGGTGGGATTTTTGTATTTGGGGACTTATTTCCAGGGAGTTTCTATCTCCGACCCTTGCTTAAG : GAATATGCTTTCTCCCCTCCAGCAGAGGCAATCGAACTTGGCTCTGGAGAGTCAAAGGAAGTCGTCTTTCATGCAACGCGTGTTGCATACAG : TGCCATGGGAGTAGTTAAACTCTTGTCTGGTCAGCCAAAAGAAGGTGTTTCAGTAGAAGCTCGATCCGAGTCAAAAGGCTTGTATGAGGAGACAGTAACAGATTCAACAGGATTTTACCGTTTGAGAGGACTCCTACCCGATACTACTTATGTGATTAAAGTAGCAAGGAAAGTTGCATCTGGTGGAGCTATGATTGAGCGTGCATCTCCTGAGTTTCTGACCGTTCAG : GTGAACGCTGAGGACTCTAGGGGATTAGATTTTGTAGTATTTGAACAGCCAGAGAGGACAATTATAAGTGGCCATGTTGAAGGGCATAAAATCAAAGAGTTCAACTCACATCTCCATGTGGAGATCAAGTCTGCTGCTGATCCGTCAAAGATTGAGTACAACTCTCCACTTCCCCTCTCAAACTTTTT</gDNA_template>
            <first_frame> L  *  L  M  A  H  K  T  S  N  L  K  *  N  L  L  M  R  V  A  I  F  A  L  R :   F  L  L  V  I  I  A  Y  L  Q  S  Q  Q  N  L  R  T  L  K  N  F  Y  F  L  L  L  I  L  M  F  Q  S  G  V  R  Y  W  M  S  S  S  I  R :   H  K  *  V  Y  M  A  P  L  F  V  R  R  N  V  V  L  Q  F  L  *  L  F  C  A  W  M  G  E  I  K  T  I  R  R  Q  L  V  W  Q  M  R  V  M  N  F  S  S  Q  M  F  S  L  V  N  T  G  L  R :   *  K  T  I  I  Q  *  H  H  Q  D  K  I  N  G  A  G  S  R  V  L  L  I  *  K  L  A  L  R  M  L  K  G  *  I  L  F  K  K  V  S  G  S  T  *  S  Q  A  M  M  W  R  A  Y  *  L  N  Q  M  V  L  E  *  T  *  T  S  R :   R  V  L  N  T  C  A  *  N  L  R  E  C  M  S  *  A  F  Q  I  H  V  F  L  L  G  V  H  L  *  S  L  T  H  L  T  F  L :   L  S  I  *  K  A  R  A  I  F  *  R  V  M  S  M  L  N  Q  A  R  L  V  A  L  R  A  C  L  R  I  Y  R  W  T  F  W  T  V  K  V  L  L  L  M  V  Y  W  Q  D  V  C  L  T  E  L  I  N  R  V  Q  P  S  T  N  F  P  C  G  L  V  R  E  E  N  L  L  L  F  L  E  M  H   : G  M  M  A  G  K  K  Y  Y  F  I  P  H  S  S  M :   L  L  *  W  K  M  A  A  N  L  Q  F  L  L  L  L  V  D  L  G  C  I  *  K  D  Q  F  L  P  L  S  M  M  L  L  S  K  *  L  L  Q  E  T  A  K  V  L  H  L  S  K  A  I  *  H  F  K  L  P  Q  G  P  M  A  Y  M  S  Q  G  L  Y  M  M  I  *  V  I  L  L  K  L  Q  S :   R  V  T  M  *  S  K  L  D  L  I  P  F  L  V  R  S  W  A  K  F  Q  C  V  Y  I  L  E  K  T  P  T  S  L  F  H  Q  F  S  Y  H  *  V  E  K  M  V  T  G  T  I  Q  Y  Q  V  L  V  G  F  L  Y  L  G  T  Y  F  Q  G  V  S  I  S  D  P  C  L  R :   N  M  L  S  P  L  Q  Q  R  Q  S  N  L  A  L  E  S  Q  R  K  S  S  F  M  Q  R  V  L  H  T   : V  P  W  E  *  L  N  S  C  L  V  S  Q  K  K  V  F  Q  *  K  L  D  P  S  Q  K  A  C  M  R  R  Q  *  Q  I  Q  Q  D  F  T  V  *  E  D  S  Y  P  I  L  L  M  *  L  K  *  Q  G  K  L  H  L  V  E  L  *  L  S  V  H  L  L  S  F  *  P  F  R :   *  T  L  R  T  L  G  D  *  I  L  *  Y  L  N  S  Q  R  G  Q  L  *  V  A  M  L  K  G  I  K  S  K  S  S  T  H  I  S  M  W  R  S  S  L  L  L  I  R  Q  R  L  S  T  T  L  H  F  P  S  Q  T  F  </first_frame>
            <second_frame>  S  D  S  W  P  T  K  R  Q  T  S  S  E  T  Y  *  *  E  W  P  F  L  L  *   : G  S  S  W  *  L  S  L  I  C  N  P  S  K  T  *  E  R  *  R  T  S  I  F  S  F  S  Y  *  C  F  S  Q  E  S  D  I  G  C  Q  V  L  S   : G  T  S  K  Y  T  W  L  R  C  L  *  G  E  M  W  F  F  S  F  F  D  S  S  A  P  G  W  E  K  *  R  R  *  E  D  N  W  F  G  K  *  E  *  *  I  F  L  L  K  C  S  P  W  *  I  Q  G  *   : G  K  K  Q  L  S  N  S  I  I  R  T  R  *  M  V  L  G  A  E  F  Y  *  F  R  S  W  R  *  G  C  *  R  G  R  F  C  S  K  R  F  L  G  Q  H  S  L  K  P  *  C  G  G  L  T  D  S  I  R  W  F  W  N  E  L  E  H  Q   : E  G  F  S  T  R  V  R  R  I  S  G  S  A  *  A  E  L  S  K  F  M  Y  F  F  W  E  F  I  C  D  H  *  H  I  *  P  F   : S  Y  L  F  E  R  R  E  L  S  F  E  G  S  C  P  C  *  I  K  L  V  *  *  R  *  G  L  A  *  E  Y  T  V  G  H  F  G  Q  *  R  F  C  C  *  W  S  I  G  K  T  C  A  L  R  S  *  S  I  E  C  S  H  L  R  I  F  H  V  G  *  S  G  R  K  I  Y  F  Y  S  S  R  C  T  :  G  *  W  R  E  K  N  I  I  L  S  H  T  A  A   : C  C  C  D  G  R  W  L  P  I  F  N  S  S  F  C  W  S  T  W  D  V  Y  R  R  I  S  F  S  P  S  Q  *  C  C  C  Q  N  N  C  Y  R  R  Q  P  K  C  S  T  *  A  R  R  F  S  T  S  N  Y  H  R  D  R  W  L  I  C  R  R  A  S  I  *  *  Y  K  L  Y  C  *  S  F  K   : A  G  L  P  C  K  A  S  W  T  S  F  L  F  L  S  E  A  G  P  N  F  S  A  Y  I  F  *  R  R  R  Q  R  A  F  S  I  S  S  L  I  I  K  W  R  R  W  L  Q  E  Q  Y  S  I  R  C  W  W  D  F  C  I  W  G  L  I  S  R  E  F  L  S  P  T  L  A  *   : G  I  C  F  L  P  S  S  R  G  N  R  T  W  L  W  R  V  K  G  S  R  L  S  C  N  A  C  C  I  Q  :  C  H  G  S  S  *  T  L  V  W  S  A  K  R  R  C  F  S  R  S  S  I  R  V  K  R  L  V  *  G  D  S  N  R  F  N  R  I  L  P  F  E  R  T  P  T  R  Y  Y  L  C  D  *  S  S  K  E  S  C  I  W  W  S  Y  D  *  A  C  I  S  *  V  S  D  R  S   : G  E  R  *  G  L  *  G  I  R  F  C  S  I  *  T  A  R  E  D  N  Y  K  W  P  C  *  R  A  *  N  Q  R  V  Q  L  T  S  P  C  G  D  Q  V  C  C  *  S  V  K  D  *  V  Q  L  S  T  S  P  L  K  L  F </second_frame>
            <third_frame>   L  T  H  G  P  Q  N  V  K  P  Q  V  K  L  T  D  E  S  G  H  F  C  F  E  :  V  P  P  G  D  Y  R  L  S  A  I  P  A  K  L  E  N  A  K  E  L  L  F  S  P  S  H  I  D  V  S  V  R  S  P  I  L  D  V  K  F  Y  Q  :  A  Q  V  S  I  H  G  S  V  V  C  K  E  K  C  G  S  S  V  S  L  T  L  L  R  L  D  G  R  N  K  D  D  K  K  T  I  G  L  A  N  E  S  N  E  F  F  F  S  N  V  L  P  G  K  Y  R  V  E  :  V  K  N  N  Y  P  I  A  S  S  G  Q  D  K  W  C  W  E  Q  S  F  I  D  L  E  V  G  A  E  D  V  K  G  V  D  F  V  Q  K  G  F  W  V  N  I  V  S  S  H  D  V  E  G  L  L  T  Q  S  D  G  S  G  M  N  L  N  I  K  :  K  G  S  Q  H  V  C  V  E  S  P  G  V  H  E  L  S  F  P  N  S  C  I  S  F  G  S  S  S  V  I  I  D  T  S  N  L  S  :  P  I  Y  L  K  G  E  S  Y  L  L  K  G  H  V  H  V  E  S  S  S  F  S  S  V  E  G  L  P  E  N  I  P  L  D  I  L  D  S  E  G  S  V  V  D  G  L  L  A  R  R  V  P  Y  G  V  D  Q  S  S  A  A  I  Y  E  F  S  M  W  A  S  P  G  G  K  F  T  F  I  P  R  D  A  R :   D  D  G  G  K  K  I  L  F  Y  P  T  Q  Q  H  :  V  A  V  M  E  D  G  C  Q  S  S  I  P  P  F  A  G  R  L  G  M  Y  I  E  G  S  V  S  P  P  L  N  D  V  V  V  K  I  I  A  T  G  D  S  Q  S  A  P  L  K  Q  G  D  L  A  L  Q  T  T  T  G  T  D  G  L  Y  V  A  G  P  L  Y  D  D  I  S  Y  T  V  E  A  S  K  :  P  G  Y  H  V  K  Q  A  G  P  H  S  F  S  C  Q  K  L  G  Q  I  S  V  R  I  Y  S  R  E  D  A  N  E  P  F  P  S  V  L  L  S  L  S  G  E  D  G  Y  R  N  N  T  V  S  G  V  G  G  I  F  V  F  G  D  L  F  P  G  S  F  Y  L  R  P  L  L  K  :  E  Y  A  F  S  P  P  A  E  A  I  E  L  G  S  G  E  S  K  E  V  V  F  H  A  T  R  V  A  Y  S :   A  M  G  V  V  K  L  L  S  G  Q  P  K  E  G  V  S  V  E  A  R  S  E  S  K  G  L  Y  E  E  T  V  T  D  S  T  G  F  Y  R  L  R  G  L  L  P  D  T  T  Y  V  I  K  V  A  R  K  V  A  S  G  G  A  M  I  E  R  A  S  P  E  F  L  T  V  Q  :  V  N  A  E  D  S  R  G  L  D  F  V  V  F  E  Q  P  E  R  T  I  I  S  G  H  V  E  G  H  K  I  K  E  F  N  S  H  L  H  V  E  I  K  S  A  A  D  P  S  K  I  E  Y  N  S  P  L  P  L  S  N  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0288L16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5381" stop="5452"/>
                    <exon start="6920" stop="7048"/>
                    <exon start="7218" stop="7394"/>
                    <exon start="9573" stop="9776"/>
                    <exon start="9864" stop="9977"/>
                    <exon start="10065" stop="10315"/>
                    <exon start="11615" stop="11660"/>
                    <exon start="11742" stop="11990"/>
                    <exon start="12408" stop="12638"/>
                    <exon start="14220" stop="14311"/>
                    <exon start="15780" stop="16008"/>
                    <exon start="17022" stop="17207"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1980</number_coding_nucleotides>
                  <number_encoded_amino_acids>660</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTHGPQNVKPQVKLTDESGHFCFEVPPGDYRLSAIPAKLENAKELLFSPSHIDVSVRSPILDVKFYQAQVSIHGSVVCKEKCGSSVSLTLLRLDGRNKDDKKTIGLANESNEFFFSNVLPGKYRVEVKNNYPIASSGQDKWCWEQSFIDLEVGAEDVKGVDFVQKGFWVNIVSSHDVEGLLTQSDGSGMNLNIKKGSQHVCVESPGVHELSFPNSCISFGSSSVIIDTSNLSPIYLKGESYLLKGHVHVESSSFSSVEGLPENIPLDILDSEGSVVDGLLARRVPYGVDQSSAAIYEFSMWASPGGKFTFIPRDARDDGGKKILFYPTQQHVAVMEDGCQSSIPPFAGRLGMYIEGSVSPPLNDVVVKIIATGDSQSAPLKQGDLALQTTTGTDGLYVAGPLYDDISYTVEASKPGYHVKQAGPHSFSCQKLGQISVRIYSREDANEPFPSVLLSLSGEDGYRNNTVSGVGGIFVFGDLFPGSFYLRPLLKEYAFSPPAEAIELGSGESKEVVFHATRVAYSAMGVVKLLSGQPKEGVSVEARSESKGLYEETVTDSTGFYRLRGLLPDTTYVIKVARKVASGGAMIERASPEFLTVQVNAEDSRGLDFVVFEQPERTIISGHVEGHKIKEFNSHLHVEIKSAADPSKIEYNSPLPLSNF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="87882" PGL_stop="88331"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87882" e_stop="88331"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="87882" e_stop="88331" e_length="450"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87882" stop="88331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M3090" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAAAATAAAAAAATATCTTCTTCTTCTTCACCCTAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGA</gDNA_template>
            <first_frame> K  K  I  K  K  Y  L  L  L  L  H  P  N  T  E  Q  I  K  M  A  S  I  A  G  V  S  I  T  I  P  T  I  S  S  D  S  P  K  I  Q  P  L  K  L  Q  T  L  N  S  P  W  K  K  S  S  Q  L  G  Y  R  R  M  M  Y  V  V  V  P  R  V  V  P  D  K  K  L  S  D  L  V  A  E  S  V  K  E  A  E  E  T  C  A  E  D  P  V  S  G  E  C  K  A  A  W  D  V  V  E  E  T  S  A  A  A  S  H  A  R  D  K  K  K  E  S  D  V  L  E  N  Y  C  K  D  N  P  E  T  D  E  C  R  T  Y  D  N  *  L  *  *  * </first_frame>
            <second_frame>  R  K  *  K  N  I  F  F  F  F  T  L  T  Q  S  K  *  K  W  R  P  *  P  V  L  V  *  Q  S  Q  Q  F  H  P  I  H  P  K  F  S  P  *  N  C  K  P  *  T  A  H  G  R  N  Q  V  N  W  V  T  G  G  *  C  M  *  W  Y  P  E  *  F  R  I  R  S  Y  L  I  *  L  R  K  V  L  K  K  L  K  K  L  V  R  R  I  R  *  A  A  S  V  R  R  H  G  M  W  W  K  R  R  V  Q  Q  R  A  M  R  G  I  R  R  R  N  Q  M  Y  W  R  I  I  A  R  I  I  Q  K  L  M  N  A  A  L  T  I  I  N  Y  D  D   </second_frame>
            <third_frame>   E  N  K  K  I  S  S  S  S  S  P  *  H  R  A  N  K  N  G  V  H  S  R  C  *  Y  N  N  P  N  N  F  I  R  F  T  Q  N  S  A  L  E  I  A  N  P  K  Q  P  M  E  E  I  K  S  I  G  L  Q  E  D  D  V  C  S  G  T  Q  S  S  S  G  *  E  A  I  *  F  S  C  G  K  C  *  R  S  *  R  N  L  C  G  G  S  G  E  R  R  V  *  G  G  M  G  C  G  G  R  D  E  C  S  S  E  P  C  E  G  *  E  E  G  I  R  C  T  G  E  L  L  Q  G  *  S  R  N  *  *  M  P  H  L  R  *  L  I  M  M  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0288L16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87882" stop="88319"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKIKKYLLLLHPNTEQIKMASIAGVSITIPTISSDSPKIQPLKLQTLNSPWKKSSQLGYRRMMYVVVPRVVPDKKLSDLVAESVKEAEETCAEDPVSGECKAAWDVVEETSAAASHARDKKKESDVLENYCKDNPETDECRTYDN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 15 chains have been computed
$ 
$ memory statistics:
$ 6856 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 2285 bytes was the average size of a spliced alignment
$ 7056 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3528 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 15 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 17:38:11
-->
