<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 17:34:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334229" ref_strand="+" ref_description="SGN-E334229 [cTOD-21-H22]">
      <seq>gaaattttagttgatggacaaaaaaaatctatcactgataaagaaggatattataagcttgaccaggtcacgtctaaacgatacacaatagaagcaaagaaagtgcactacagatttgacaggctcattgactttttggtattgcctaatatggcttctatatctgacatcaaagctgcatcatatgatgtatgtggtgttgcacaaacagttaattctgaattcaaagccaaggtagctctgactcatggcccacaaaacgtcaaacctcaagtgaaacttactgatgagagtggccatttttgctttgaggttcctcctggtgattatcgcttatctgcaatcccagcaaaacttgagaacgctaaagaacttctattttctccttctcatattgatgtttcagtcaggagtccgatattggatgtcaagttctatcaggcacaagtaagtatacatggctccgttgtttgtaaggagaaatgtggttcttcagtttctttgactcttctgcgcctggatgggagaaataaagacgataagaagacaattggtttggcaaatgagagtaatgaatttttcttctcaaatgttctccctggtaaatacagggttgaggtaaaaacaattatccaatagcatcatcaggacaagataaatggtgctgggagcagagttttattgatttagaaagtggcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2886" stop="9956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3186" g_stop="3251" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3252" i_stop="4664" i_length="1413">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.381" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4665" g_stop="4736" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="138" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4737" i_stop="4897" i_length="161">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4898" g_stop="4993" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="234" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4994" i_stop="5374" i_length="381">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5375" g_stop="5452" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="312" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5453" i_stop="6919" i_length="1467">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6920" g_stop="7048" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="441" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7049" i_stop="7217" i_length="169">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7218" g_stop="7394" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="618" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="7395" i_stop="9572" i_length="2178">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9573" g_stop="9656" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="701" r_length="83" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E334229" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3186" e_stop="3251"/>
          <exon e_start="4665" e_stop="4736"/>
          <exon e_start="4898" e_stop="4993"/>
          <exon e_start="5375" e_stop="5452"/>
          <exon e_start="6920" e_stop="7048"/>
          <exon e_start="7218" e_stop="7394"/>
          <exon e_start="9573" e_stop="9656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTTTAGTTGATGGACAAAAAAAATCTATCACTGATAAAGAAGGATATTATAAGCTTGACCAGGTAATTCTATTTGCAGCCTCGTTATAGCTTCAAAGTTTTGTACATTGAAGAATTGACAATTTGTTTTAAATACTACCAGATTGTCTTTAGCATCAGTCTTTTTTGTGGTTGTCTATTTGCTAAAAGTAAGAATATCTGATGGTACTTTTAAGCTCCGTCTGCTACCCGTTGTGGTTAGGAATTAGTATCATCATTCCTTTGTGTTCAATACCTTGCCTTTCACTTCCTCGTGGACATACTTTGAGATTACGTTTGTTATGATGTTGTTGTTGCCTTTCACTTCCTCAAATGCTTGGATTTTTTTAAAGGACCTCAAATGCTTGATTGAGTTGACTGAAATGGTGTAAGATGCAGGGTTTCCGAATAGTGGATTTTGCTAGAATATATGAAAAGAATGATTTTTTCTGGGTTAGAGTAGGGGGCTCAATATTCTAAAACCTCGGGGATGTTCAAATATTTTCCTCGTGTATATTTCTGTCTGCAATTTTCACTTCTTGCAAACTTTTAATATGTTTTCTCGCTTTTGAAGTAATCTTTTTATTTTCATTCGATTTATTTGAAAAAGATTTTGTTGCAAGATATATTTATGTGATAGAAAAACTTTTAAATGCAATTAAACTCATTAACTTTCCTGTTAAGTGATAATTTATATTTTTAAAAAGTTAAAACATTCAATGATGTATTTTTGCAACCTACTACATAATGGCCATATTAAGTTCGCTCCCTGTAAATGAAAAGTATAGCAGATGCCTCATGGAATATATGTGAGCCATTTTCTCTTTCAGCTCTCTGACATTGACTTGCCTCTATTATCAAATTGTTTGCCATGATTCACTGTAAAGATGGTACAATCATCTGTCCGGATTTCATAGATGACATAGGTTGCAGTAATTTCATCTGCTCCTGTAAAATGTTTCCACCTTGAAGTAACAGAAATCATGACATTACTAGTAATTAAGGCCAAATAGGACTGATTAATGGGTTACAACGGAGAAGTATCTGATTTTACACTAAGAAAACTTGCGTTGCTGAAATGCTGATAAAAAATATCAAGTTGCTGAAAGTTATGGACACCATTCTATATAGATGGCTTGCTGACTCAGGTGATGTCCCAATACGAGACAAACAACCCCCAAGCCGCATATTGCTGTCACAAAAAAATTAACAGTAGAAGTCAAGGCAAGTTTAAGCCTGAAAGTCCAAAAAGGACCAAGTAGAGAAATATTGGTTCAATAACAAAGAAAAAGGGAGAAGCAGTAGTTGTAGATCAGCTCAGGGGCCTTGCTTTCATTGCAAGGATAGTTGCTTCACCCTCAATAGAAATCTCACGGTTGTTCTTCTCTAATATGCATGCTTCATAGCCCATTTTTATTTGTATTTTTTGCATTTGATTGACTCGCAAAGCATCTCCAGGTCACGTCTAAACGATACACAATAGAAGCAAAGAAAGTGCACTACAGATTTGACAGGCTCATTGACTTTTTGGTAAGCTTATAACTGCATCAGTTAAGAAATTTATAATGATGATTTGCAAGATCTATCTCCTTTAGTGCAAATAGTTTGCTATATAGTCTTTATTACAAATTGTTACTAACTGCCCCCTTTCTTTTGGTGGTTCCACCTCCACCATACTAATGATTGTATAGGTATTGCCTAATATGGCTTCTATATCTGACATCAAAGCTGCATCATATGATGTATGTGGTGTTGCACAAACAGTTAATTCTGAATTCAAAGCCAAGGTATCATGTTCCTCTTTCTGTTATTCTATCAAATTTGCAATTCTTAGGCTATTGGTGTTTTGCACATGAGACTTAATTCAAATCTGAAATTAGTTTGTTATGCTGGTTGGCATTTCTGTATAATATAACCTTTTTCTTTACGAGTGGTTAGTTTACTTTGTGGAAGTTACTGTTAGCAATTATGCACTGATAATTGTTATGTTAAATGAGTTTGGTTTGTATGTTTTAATGGCTTGATACTAGTTTTTACTTCCTTACAAATCAGTATCATACACCTACCCGAGTTGTTAATTGTCTAGTTTCATGGTCCAAACTTAAATAATATTTGTAGTTTCTTTTGATATTTCCATTGTCCTCTTGCAAATGGTTATGTGCACGCAGGTAGCTCTGACTCATGGCCCACAAAACGTCAAACCTCAAGTGAAACTTACTGATGAGAGTGGCCATTTTTGCTTTGAGGTATGGCAGAGTGAATATTATTTTTACTTTTTTCTGCTTCTTGAATACTTTCCATCACTGGTTATAAGGGGCTGTCAAAAGTATAATGGCATGTATCTAACACATTAGCCCCGTTACGGGAAAGTATGATCTGTAGGATGCATCAATAATATACTTTTCCAGACTCCCAAGAGGGGGTGGGAGGATGCACAACAAGAAATCCATCATTTATTGGTGCTTGTTTATTAAGACACAACATTTCTTTATTTGGGTGGGTGGGGTGTTGTTGGAGGGAGCTCAGCATGCTGTCTTCAGAAGTTAATTTGATCAATAGTGATCTAGAAGAACCAACTGGTCAGTAACCAATGAGTAATAGGATAATTAACTTGAAGGAAATAGCTGAATCTTCTAATTTTGCCTCAAATCTAGTCTATATTCTGCTTTATTGTTTTGTATATAATAGAGTTGCTTAGCCACGTCTCTGTTTGTCTGTGTGTTAAAAGTATCTTTTGGCACGTGGGAACAATTTTTGTGTTAGAGAAGGTTGAGACAAGATTTTTGCGTTCTCCATTGCTATTTTTTTAATGTTAGGGAAGGATGAGACTTAAGGTTCTCCATATCTAGTATCTTGGGCTTAAGCTTTTAGGTGAAAGAGGACACTTTTCAACTTCATTGCTCAACTTTGTATTCTTGTATTTTTGTATAGAAGACGTTGTTTTTCCAATTTTAGTCTATCATCAAACATCATTTTTTGTTTTTTTTTATTCTTAGTAATTACATGAAAGTACTGCCAATCACCAATTCTATATTATTTTTAGTGACCAAGAAATCTCAAGGAGCCTGCCCCTTTGGCCAACCGCAACCCTCCAAATTCGGGAGTGAGATCCGCCCCTCTATCCTTCTCGTCTTAAATAATGGACTTAGCTTGCTTTAGTTTGCCTCCAACCACCAATTTCTTATTAGAAGATTGTTTAAGGATAACAAAAAGATCGTGGTCAGAGTGTTATTTCAAGAGGAATGTTGAAATTTTTTTCAAGAAGTTCCTTAGAATGACCAGGTTGTCAATAAGCAGGACCTCGTACCTCTTTGGCGGCAGAAGGGATGAGAAAATTTGATGATTGATTATTGTAGGTTTTGTTGTTTATACTGTTACTTCCTTGGCTAGTTTGGTGGTGATTTGGAACAGCAAAAGATAACAGGTATGATTGGTCAGAAGATAGAGATAGGTAACAAGAGATGTGTTGGGGCCAGCAGATATCCAATTTTTTTGAAGTTCTGTAAGTAGGTTTTTGTTCACCAGCTGTAAAAACTGATGTGTAAAATGGGGAAGATGTAATGGGTCTAGCTGGTAAAATGAAGAATAAAGGAGGAACTTGTAGCTTTGTGTAGAGTGGATTTTTTTATCATCATCCTCAGATGTAATGGAACTTAAAAACTGTCAATATTTTCTGTTTGGAACACTTAATGTTTTATCTCCATTTGCTGCAGGTTCCTCCTGGTGATTATCGCTTATCTGCAATCCCAGCAAAACTTGAGAACGCTAAAGAACTTCTATTTTCTCCTTCTCATATTGATGTTTCAGTCAGGAGTCCGATATTGGATGTCAAGTTCTATCAGGTATTTGAGTTATGTTATTAGAATTCAAACTAAGGACTGCTTTGAAGATATGCCAATTTTTTTCATGTCGTGTCAAACCAATTATCTAAGTTGCGGATATGGTAGTAAAGTCGGTCCATCTGAATTCAGATGAAATGTTCGTTGATCACTCCTTTTCTTATTTTTGAAGGCACAAGTAAGTATACATGGCTCCGTTGTTTGTAAGGAGAAATGTGGTTCTTCAGTTTCTTTGACTCTTCTGCGCCTGGATGGGAGAAATAAAGACGATAAGAAGACAATTGGTTTGGCAAATGAGAGTAATGAATTTTTCTTCTCAAATGTTCTCCCTGGTAAATACAGGGTTGAGGTAACACCCCCACCTATGGCCTTGGTTCTTCCTGTTTAGGACCCTTTGCATTTCTGTCTGTGTATTTACATCCCAATGTCTTTTCCTTTGCCTTTTATCACCCTTTGCATTTCTACATTTACATCCCAATGTCTTTCCTTTGCTTTTACCCCGCTTGTTATTAGCTAACTGTATCTGGTAACAGAAGGCTTGTGTTTTTATTTTGTTGTTAAAAATAAGTTAGTGTTTTGTGATTAAATAGAGGGGTGATTTTCTTTCTCGACACCACTGCTAGGCAGTCTGCAACACTCACAAACTTCAGCCTCACAATACAACACGAATCTGTCGAAGTATAGACCGTTTCTTTTAGGCAGCGTAGTGATTTGACAAACACAGAAAATGTACAGGAGCGAATCCCAACCTTAATTAATTTGAATATTCAACAAAGGAAGAAGCTTCACTGATTCACTAAGGCACAGAACACTCTCTGAATCCTTAGTTGAATTTTTGCCCCCATTTAAGATCTCTACCCAAGGCAGTTACAAACAGTTACAACTGCCCATGTGCTTGGTATATGCTTTGAAAAAAATCTTATCTGAACTTAACTAATTTACAACAGTCATATTCTAATAGACATAATACATTTCGAATTCAAATGTCTATGCCCATGTGCCTCACTCATGCCAATCATTTGCCTTAGCTGATATTGCGTGTACCCACACTTAGAATAATTCTGCCTGCTGCCAGCCTTAGTTTAATTTTATCATTTCTGCCAACTCATGCCAACACTTGTCCAGCTTTGTCTTGCCATCGTCAAGTCCCCACAGCCTTGCCTTGTCAAGCCAACAAACTTCCTTGCCTTGTCGATGCTACTGTTTGCATGTATGCCCCCATAGGTGCCATACGTCTGTCTTTGCCTTTGCACGTCCAAGCTGCCTTGCCAACACTCAAGCATCTTGAACACAATGCTGGACTTTAATACTTAGCCGCACAATTGCATTGTTTCCCCATGCCCATGCCAAGTCCGATGCACAAGTCCTTGCCATGCGCTCATGCCTCTACCGGCGTGCCCTCATCTAACAAACCACCCCCATCCCTTGAGCTCGATGCGCCTCATCGAGACTGTTTTGAGATAGTCATTGATTCGGTCATCAAATTGCCATAAATCCTTCGTCTTCTCCCAAACAACATCTGCTCCCACTCTTGCCTTTCCACTTTACCAAAAATTCAGTCTTGTTATTCTTCTTACTTGTGCCAACAACCTGGTGATCAAGGATCTCTTCTATCTCAGCATCAAACTATGACGGAATAGAAGGAGGTGTCCTCTTTGATCTGTTTCTATTCGGATCATCATTATCTGGGAAGTAAGGTTTCAAGAAACTCACATGGAAAGTGGGATGAATCTTTAACCTTTCAGCTTCAATTTGTGAGCAACCTCACCGACTTGTTGTACCACTTCAAATAGGCTGTTGTACTTGGGATCAATCCCCTATGCCGAATCTTACCCGCAATTTGCTTCCTGATATGGGGCGTGAGTTTCAGCAATACCTAGTCACGCACATTAACCTCTACTTCACGCGTCGCTGAGCCTTGCACAGGCTGTCTTGTGCCTCTGAAATCATTTTAGGTCTGTCCCTTGCAGGCCTGTAGCTGCTGGACATTTCCCTTGGTTCTTTGTTTTGGCAACATCTAATGCAGTCATGGGCTTTCTACCTAAAACAATCTCAAACAGACTTGTTTCTGTTGCTAATGTCTTGTGCAAATTGTCCGCCGCTGCCTCCTCACAAAGGAAACACCAATATATGCAAATAACCTTTCGTCTCCTGAGAATCTCTGTCATCAAGATTACCCCTTTAGTAGATTATCACATGAAGAAGCACACCTTCCTTAAAACCTTAGGAATCCAACCCAAACCATGTGGAAAACTACTATCCCATTTGTAATTTTAAGCTCTTAATGTCCAAACCTCTGTTTTCCTGCTTTGAAGTAACAATATCCCATTTGACCATTGCAAGCCTTACATTCTTGTCTATTTCTGCATCAAGGAGTGCATGTACTCTATTCATGTTTGATTTCCTAAAGAAATCATTGTGTCCAGAAGTAGTCTAAGCTAAAGTTGCAGTATCTATTGCATCCGTTAATCTATTCCTTCAGTTAGTTGGCAATGCATTATGTCGTTTCATTTGATCTTATTTTCAGGTAAAAAACAATTATCCAATAGCATCATCAGGACAAGATAAATGGTGCTGGGAGCAGAGTTTTATTGATTTAGAAGTTGGCGCT</genome_strand>
        <mrna_strand>GAAATTTTAGTTGATGGACAAAAAAAATCTATCACTGATAAAGAAGGATATTATAAGCTTGACCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGTCTAAACGATACACAATAGAAGCAAAGAAAGTGCACTACAGATTTGACAGGCTCATTGACTTTTTG.................................................................................................................................................................GTATTGCCTAATATGGCTTCTATATCTGACATCAAAGCTGCATCATATGATGTATGTGGTGTTGCACAAACAGTTAATTCTGAATTCAAAGCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................GTAGCTCTGACTCATGGCCCACAAAACGTCAAACCTCAAGTGAAACTTACTGATGAGAGTGGCCATTTTTGCTTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCCTGGTGATTATCGCTTATCTGCAATCCCAGCAAAACTTGAGAACGCTAAAGAACTTCTATTTTCTCCTTCTCATATTGATGTTTCAGTCAGGAGTCCGATATTGGATGTCAAGTTCTATCAG.........................................................................................................................................................................GCACAAGTAAGTATACATGGCTCCGTTGTTTGTAAGGAGAAATGTGGTTCTTCAGTTTCTTTGACTCTTCTGCGCCTGGATGGGAGAAATAAAGACGATAAGAAGACAATTGGTTTGGCAAATGAGAGTAATGAATTTTTCTTCTCAAATGTTCTCCCTGGTAAATACAGGGTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-AAAAACAATTATCCAATAGCATCATCAGGACAAGATAAATGGTGCTGGGAGCAGAGTTTTATTGATTTAGAAAGTGGCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482842" ref_strand="+" ref_description="SGN-E482842 [cSTE-5-D24]">
      <seq>ctctgactcatggcccgcaaaacgtcaaacctcaagtgaaacttactgatgagggtggccatttttgctttgaggttcctcctggtgattatcgcttatctgcaatcccagctaaacttgagaacgctaaagagcttctattttctccttctcatattgatgtttcagtcaggagtccgatattggatgtcaaattctatcaggcacaagtaagtatacatggctctgttgtttgtaaggagaaatgtggttcttcagtttctttgactcttctgcgcctggatgggagaaataaagacgataagaagacaattggtttggcaaatgagagtaatgaatttttcttctcaaatgttctccctggtaaatacagggttgaggtaaaaaacaattatccaatagcatcatcaggacaagataaatggtgctgggagcagagttttatcaatttagaagttggcgctgaggatgttaaaggggtagattttgttcaaaaaggtttctgggtcaacataatctcaagccatgatgtggatggtttactgactcaatcagatggttctagaatgaacttgaacatcaagaagggttctcaacacgtgtgcgtagaatctccgggagtgcatgagctgagctttccaaattcatgtatttcttttgggagttcatctgtgatcattgacacatctaacctttctcctatctatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5079" stop="10277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5379" g_stop="5452" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5453" i_stop="6919" i_length="1467">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6920" g_stop="7048" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="203" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7049" i_stop="7217" i_length="169">
            <donor d_prob="0.845" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7218" g_stop="7394" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="380" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7395" i_stop="9572" i_length="2178">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9573" g_stop="9776" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="584" r_length="204" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9777" i_stop="9863" i_length="87">
            <donor d_prob="0.931" d_score="0.94"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9864" g_stop="9977" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="698" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9978" i_stop="10064" i_length="87">
            <donor d_prob="0.472" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10065" g_stop="10077" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="711" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E482842" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5379" e_stop="5452"/>
          <exon e_start="6920" e_stop="7048"/>
          <exon e_start="7218" e_stop="7394"/>
          <exon e_start="9573" e_stop="9776"/>
          <exon e_start="9864" e_stop="9977"/>
          <exon e_start="10065" e_stop="10077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGACTCATGGCCCACAAAACGTCAAACCTCAAGTGAAACTTACTGATGAGAGTGGCCATTTTTGCTTTGAGGTATGGCAGAGTGAATATTATTTTTACTTTTTTCTGCTTCTTGAATACTTTCCATCACTGGTTATAAGGGGCTGTCAAAAGTATAATGGCATGTATCTAACACATTAGCCCCGTTACGGGAAAGTATGATCTGTAGGATGCATCAATAATATACTTTTCCAGACTCCCAAGAGGGGGTGGGAGGATGCACAACAAGAAATCCATCATTTATTGGTGCTTGTTTATTAAGACACAACATTTCTTTATTTGGGTGGGTGGGGTGTTGTTGGAGGGAGCTCAGCATGCTGTCTTCAGAAGTTAATTTGATCAATAGTGATCTAGAAGAACCAACTGGTCAGTAACCAATGAGTAATAGGATAATTAACTTGAAGGAAATAGCTGAATCTTCTAATTTTGCCTCAAATCTAGTCTATATTCTGCTTTATTGTTTTGTATATAATAGAGTTGCTTAGCCACGTCTCTGTTTGTCTGTGTGTTAAAAGTATCTTTTGGCACGTGGGAACAATTTTTGTGTTAGAGAAGGTTGAGACAAGATTTTTGCGTTCTCCATTGCTATTTTTTTAATGTTAGGGAAGGATGAGACTTAAGGTTCTCCATATCTAGTATCTTGGGCTTAAGCTTTTAGGTGAAAGAGGACACTTTTCAACTTCATTGCTCAACTTTGTATTCTTGTATTTTTGTATAGAAGACGTTGTTTTTCCAATTTTAGTCTATCATCAAACATCATTTTTTGTTTTTTTTTATTCTTAGTAATTACATGAAAGTACTGCCAATCACCAATTCTATATTATTTTTAGTGACCAAGAAATCTCAAGGAGCCTGCCCCTTTGGCCAACCGCAACCCTCCAAATTCGGGAGTGAGATCCGCCCCTCTATCCTTCTCGTCTTAAATAATGGACTTAGCTTGCTTTAGTTTGCCTCCAACCACCAATTTCTTATTAGAAGATTGTTTAAGGATAACAAAAAGATCGTGGTCAGAGTGTTATTTCAAGAGGAATGTTGAAATTTTTTTCAAGAAGTTCCTTAGAATGACCAGGTTGTCAATAAGCAGGACCTCGTACCTCTTTGGCGGCAGAAGGGATGAGAAAATTTGATGATTGATTATTGTAGGTTTTGTTGTTTATACTGTTACTTCCTTGGCTAGTTTGGTGGTGATTTGGAACAGCAAAAGATAACAGGTATGATTGGTCAGAAGATAGAGATAGGTAACAAGAGATGTGTTGGGGCCAGCAGATATCCAATTTTTTTGAAGTTCTGTAAGTAGGTTTTTGTTCACCAGCTGTAAAAACTGATGTGTAAAATGGGGAAGATGTAATGGGTCTAGCTGGTAAAATGAAGAATAAAGGAGGAACTTGTAGCTTTGTGTAGAGTGGATTTTTTTATCATCATCCTCAGATGTAATGGAACTTAAAAACTGTCAATATTTTCTGTTTGGAACACTTAATGTTTTATCTCCATTTGCTGCAGGTTCCTCCTGGTGATTATCGCTTATCTGCAATCCCAGCAAAACTTGAGAACGCTAAAGAACTTCTATTTTCTCCTTCTCATATTGATGTTTCAGTCAGGAGTCCGATATTGGATGTCAAGTTCTATCAGGTATTTGAGTTATGTTATTAGAATTCAAACTAAGGACTGCTTTGAAGATATGCCAATTTTTTTCATGTCGTGTCAAACCAATTATCTAAGTTGCGGATATGGTAGTAAAGTCGGTCCATCTGAATTCAGATGAAATGTTCGTTGATCACTCCTTTTCTTATTTTTGAAGGCACAAGTAAGTATACATGGCTCCGTTGTTTGTAAGGAGAAATGTGGTTCTTCAGTTTCTTTGACTCTTCTGCGCCTGGATGGGAGAAATAAAGACGATAAGAAGACAATTGGTTTGGCAAATGAGAGTAATGAATTTTTCTTCTCAAATGTTCTCCCTGGTAAATACAGGGTTGAGGTAACACCCCCACCTATGGCCTTGGTTCTTCCTGTTTAGGACCCTTTGCATTTCTGTCTGTGTATTTACATCCCAATGTCTTTTCCTTTGCCTTTTATCACCCTTTGCATTTCTACATTTACATCCCAATGTCTTTCCTTTGCTTTTACCCCGCTTGTTATTAGCTAACTGTATCTGGTAACAGAAGGCTTGTGTTTTTATTTTGTTGTTAAAAATAAGTTAGTGTTTTGTGATTAAATAGAGGGGTGATTTTCTTTCTCGACACCACTGCTAGGCAGTCTGCAACACTCACAAACTTCAGCCTCACAATACAACACGAATCTGTCGAAGTATAGACCGTTTCTTTTAGGCAGCGTAGTGATTTGACAAACACAGAAAATGTACAGGAGCGAATCCCAACCTTAATTAATTTGAATATTCAACAAAGGAAGAAGCTTCACTGATTCACTAAGGCACAGAACACTCTCTGAATCCTTAGTTGAATTTTTGCCCCCATTTAAGATCTCTACCCAAGGCAGTTACAAACAGTTACAACTGCCCATGTGCTTGGTATATGCTTTGAAAAAAATCTTATCTGAACTTAACTAATTTACAACAGTCATATTCTAATAGACATAATACATTTCGAATTCAAATGTCTATGCCCATGTGCCTCACTCATGCCAATCATTTGCCTTAGCTGATATTGCGTGTACCCACACTTAGAATAATTCTGCCTGCTGCCAGCCTTAGTTTAATTTTATCATTTCTGCCAACTCATGCCAACACTTGTCCAGCTTTGTCTTGCCATCGTCAAGTCCCCACAGCCTTGCCTTGTCAAGCCAACAAACTTCCTTGCCTTGTCGATGCTACTGTTTGCATGTATGCCCCCATAGGTGCCATACGTCTGTCTTTGCCTTTGCACGTCCAAGCTGCCTTGCCAACACTCAAGCATCTTGAACACAATGCTGGACTTTAATACTTAGCCGCACAATTGCATTGTTTCCCCATGCCCATGCCAAGTCCGATGCACAAGTCCTTGCCATGCGCTCATGCCTCTACCGGCGTGCCCTCATCTAACAAACCACCCCCATCCCTTGAGCTCGATGCGCCTCATCGAGACTGTTTTGAGATAGTCATTGATTCGGTCATCAAATTGCCATAAATCCTTCGTCTTCTCCCAAACAACATCTGCTCCCACTCTTGCCTTTCCACTTTACCAAAAATTCAGTCTTGTTATTCTTCTTACTTGTGCCAACAACCTGGTGATCAAGGATCTCTTCTATCTCAGCATCAAACTATGACGGAATAGAAGGAGGTGTCCTCTTTGATCTGTTTCTATTCGGATCATCATTATCTGGGAAGTAAGGTTTCAAGAAACTCACATGGAAAGTGGGATGAATCTTTAACCTTTCAGCTTCAATTTGTGAGCAACCTCACCGACTTGTTGTACCACTTCAAATAGGCTGTTGTACTTGGGATCAATCCCCTATGCCGAATCTTACCCGCAATTTGCTTCCTGATATGGGGCGTGAGTTTCAGCAATACCTAGTCACGCACATTAACCTCTACTTCACGCGTCGCTGAGCCTTGCACAGGCTGTCTTGTGCCTCTGAAATCATTTTAGGTCTGTCCCTTGCAGGCCTGTAGCTGCTGGACATTTCCCTTGGTTCTTTGTTTTGGCAACATCTAATGCAGTCATGGGCTTTCTACCTAAAACAATCTCAAACAGACTTGTTTCTGTTGCTAATGTCTTGTGCAAATTGTCCGCCGCTGCCTCCTCACAAAGGAAACACCAATATATGCAAATAACCTTTCGTCTCCTGAGAATCTCTGTCATCAAGATTACCCCTTTAGTAGATTATCACATGAAGAAGCACACCTTCCTTAAAACCTTAGGAATCCAACCCAAACCATGTGGAAAACTACTATCCCATTTGTAATTTTAAGCTCTTAATGTCCAAACCTCTGTTTTCCTGCTTTGAAGTAACAATATCCCATTTGACCATTGCAAGCCTTACATTCTTGTCTATTTCTGCATCAAGGAGTGCATGTACTCTATTCATGTTTGATTTCCTAAAGAAATCATTGTGTCCAGAAGTAGTCTAAGCTAAAGTTGCAGTATCTATTGCATCCGTTAATCTATTCCTTCAGTTAGTTGGCAATGCATTATGTCGTTTCATTTGATCTTATTTTCAGGTAAAAAACAATTATCCAATAGCATCATCAGGACAAGATAAATGGTGCTGGGAGCAGAGTTTTATTGATTTAGAAGTTGGCGCTGAGGATGTTAAAGGGGTAGATTTTGTTCAAAAAGGTTTCTGGGTCAACATAGTCTCAAGCCATGATGTGGAGGGCTTACTGACTCAATCAGATGGTTCTGGAATGAACTTGAACATCAAGGTTGGTTTAGTCCACCTCAAAAAGTTCTCTTAGATCTTCTAACTAACACGAGAAGCTCATTTTCTTTTTCTGGCTCTTGAATTGCAGAAGGGTTCTCAACACGTGTGCGTAGAATCTCCGGGAGTGCATGAGCTGAGCTTTCCAAATTCATGTATTTCTTTTGGGAGTTCATCTGTGATCATTGACACATCTAACCTTTCTGTATGATCCTTTTGGAGTTGGAATTTTTTCTATTGAACTAGTTCATTTATCATGCATGTCTTCTCATATACTTTCTTCTGTTTGTAGCCTATCTATTTGA</genome_strand>
        <mrna_strand>CTCTGACTCATGGCCCGCAAAACGTCAAACCTCAAGTGAAACTTACTGATGAGGGTGGCCATTTTTGCTTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCCTGGTGATTATCGCTTATCTGCAATCCCAGCTAAACTTGAGAACGCTAAAGAGCTTCTATTTTCTCCTTCTCATATTGATGTTTCAGTCAGGAGTCCGATATTGGATGTCAAATTCTATCAG.........................................................................................................................................................................GCACAAGTAAGTATACATGGCTCTGTTGTTTGTAAGGAGAAATGTGGTTCTTCAGTTTCTTTGACTCTTCTGCGCCTGGATGGGAGAAATAAAGACGATAAGAAGACAATTGGTTTGGCAAATGAGAGTAATGAATTTTTCTTCTCAAATGTTCTCCCTGGTAAATACAGGGTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAACAATTATCCAATAGCATCATCAGGACAAGATAAATGGTGCTGGGAGCAGAGTTTTATCAATTTAGAAGTTGGCGCTGAGGATGTTAAAGGGGTAGATTTTGTTCAAAAAGGTTTCTGGGTCAACATAATCTCAAGCCATGATGTGGATGGTTTACTGACTCAATCAGATGGTTCTAGAATGAACTTGAACATCAAG.......................................................................................AAGGGTTCTCAACACGTGTGCGTAGAATCTCCGGGAGTGCATGAGCTGAGCTTTCCAAATTCATGTATTTCTTTTGGGAGTTCATCTGTGATCATTGACACATCTAACCTTTCT.......................................................................................CCTATCTATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601296" ref_strand="+" ref_description="SGN-E601296 [54331]">
      <seq>aaaacgtcaaacctcaagtgaaacttactgatgagagtggccatttttgctttgaggttcctcctggtgattatcgcttatctgcaatcccagcaaaacttgagaacgctaaagagcttctattttctccttctcatattgatgtttcagtcaggagtccgatattggatgtcaaattctatcaggcacaagtaagtatacatggttctgttgtttgtaaggagaaatgtggttcttcagtttctttgactcttctgcgcctggatgggagaaataaagacgataagaagacaattggtttggcaaatgagagtaatgaatttttcttctcaaatgttctccctggtaaatacagggttgaggtaaaaaacaattatccaatagcatcatcaggacaagataaatggtgctgggagcagagttttatcaatttagaagttggcgctgaggatgttaaaggggtagattttgttcaacaaaggtttctgggtcaacataatctcaagtcatgatgcggatggtttactgactcaatcagatggttctagaatgaacttgaacatcaagaagggttctcaacacgtgtgcgtagaatctccgggagtgcatgagttgagctttccaaattcatgtatttcttttgggagttcatctgtgatcattgaccacatctaaccttttcgctatctatttgaaaggcgagagctatcttttgaagggtcatgtcccatgttgaatcaagctcatttagtagcattgagggtttggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5097" stop="10452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5397" g_stop="5452" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5453" i_stop="6919" i_length="1467">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6920" g_stop="7048" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="185" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7049" i_stop="7217" i_length="169">
            <donor d_prob="0.845" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7218" g_stop="7394" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="362" r_length="177" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7395" i_stop="9572" i_length="2178">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9573" g_stop="9776" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="567" r_length="205" r_score="0.951"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9777" i_stop="9863" i_length="87">
            <donor d_prob="0.931" d_score="0.94"/>
            <acceptor a_prob="0.899" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9864" g_stop="9977" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="682" r_length="115" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9978" i_stop="10064" i_length="87">
            <donor d_prob="0.472" d_score="0.92"/>
            <acceptor a_prob="0.953" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10065" g_stop="10152" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="771" r_length="89" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E601296" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E601296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5397" e_stop="5452"/>
          <exon e_start="6920" e_stop="7048"/>
          <exon e_start="7218" e_stop="7394"/>
          <exon e_start="9573" e_stop="9776"/>
          <exon e_start="9864" e_stop="9977"/>
          <exon e_start="10065" e_stop="10152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACGTCAAACCTCAAGTGAAACTTACTGATGAGAGTGGCCATTTTTGCTTTGAGGTATGGCAGAGTGAATATTATTTTTACTTTTTTCTGCTTCTTGAATACTTTCCATCACTGGTTATAAGGGGCTGTCAAAAGTATAATGGCATGTATCTAACACATTAGCCCCGTTACGGGAAAGTATGATCTGTAGGATGCATCAATAATATACTTTTCCAGACTCCCAAGAGGGGGTGGGAGGATGCACAACAAGAAATCCATCATTTATTGGTGCTTGTTTATTAAGACACAACATTTCTTTATTTGGGTGGGTGGGGTGTTGTTGGAGGGAGCTCAGCATGCTGTCTTCAGAAGTTAATTTGATCAATAGTGATCTAGAAGAACCAACTGGTCAGTAACCAATGAGTAATAGGATAATTAACTTGAAGGAAATAGCTGAATCTTCTAATTTTGCCTCAAATCTAGTCTATATTCTGCTTTATTGTTTTGTATATAATAGAGTTGCTTAGCCACGTCTCTGTTTGTCTGTGTGTTAAAAGTATCTTTTGGCACGTGGGAACAATTTTTGTGTTAGAGAAGGTTGAGACAAGATTTTTGCGTTCTCCATTGCTATTTTTTTAATGTTAGGGAAGGATGAGACTTAAGGTTCTCCATATCTAGTATCTTGGGCTTAAGCTTTTAGGTGAAAGAGGACACTTTTCAACTTCATTGCTCAACTTTGTATTCTTGTATTTTTGTATAGAAGACGTTGTTTTTCCAATTTTAGTCTATCATCAAACATCATTTTTTGTTTTTTTTTATTCTTAGTAATTACATGAAAGTACTGCCAATCACCAATTCTATATTATTTTTAGTGACCAAGAAATCTCAAGGAGCCTGCCCCTTTGGCCAACCGCAACCCTCCAAATTCGGGAGTGAGATCCGCCCCTCTATCCTTCTCGTCTTAAATAATGGACTTAGCTTGCTTTAGTTTGCCTCCAACCACCAATTTCTTATTAGAAGATTGTTTAAGGATAACAAAAAGATCGTGGTCAGAGTGTTATTTCAAGAGGAATGTTGAAATTTTTTTCAAGAAGTTCCTTAGAATGACCAGGTTGTCAATAAGCAGGACCTCGTACCTCTTTGGCGGCAGAAGGGATGAGAAAATTTGATGATTGATTATTGTAGGTTTTGTTGTTTATACTGTTACTTCCTTGGCTAGTTTGGTGGTGATTTGGAACAGCAAAAGATAACAGGTATGATTGGTCAGAAGATAGAGATAGGTAACAAGAGATGTGTTGGGGCCAGCAGATATCCAATTTTTTTGAAGTTCTGTAAGTAGGTTTTTGTTCACCAGCTGTAAAAACTGATGTGTAAAATGGGGAAGATGTAATGGGTCTAGCTGGTAAAATGAAGAATAAAGGAGGAACTTGTAGCTTTGTGTAGAGTGGATTTTTTTATCATCATCCTCAGATGTAATGGAACTTAAAAACTGTCAATATTTTCTGTTTGGAACACTTAATGTTTTATCTCCATTTGCTGCAGGTTCCTCCTGGTGATTATCGCTTATCTGCAATCCCAGCAAAACTTGAGAACGCTAAAGAACTTCTATTTTCTCCTTCTCATATTGATGTTTCAGTCAGGAGTCCGATATTGGATGTCAAGTTCTATCAGGTATTTGAGTTATGTTATTAGAATTCAAACTAAGGACTGCTTTGAAGATATGCCAATTTTTTTCATGTCGTGTCAAACCAATTATCTAAGTTGCGGATATGGTAGTAAAGTCGGTCCATCTGAATTCAGATGAAATGTTCGTTGATCACTCCTTTTCTTATTTTTGAAGGCACAAGTAAGTATACATGGCTCCGTTGTTTGTAAGGAGAAATGTGGTTCTTCAGTTTCTTTGACTCTTCTGCGCCTGGATGGGAGAAATAAAGACGATAAGAAGACAATTGGTTTGGCAAATGAGAGTAATGAATTTTTCTTCTCAAATGTTCTCCCTGGTAAATACAGGGTTGAGGTAACACCCCCACCTATGGCCTTGGTTCTTCCTGTTTAGGACCCTTTGCATTTCTGTCTGTGTATTTACATCCCAATGTCTTTTCCTTTGCCTTTTATCACCCTTTGCATTTCTACATTTACATCCCAATGTCTTTCCTTTGCTTTTACCCCGCTTGTTATTAGCTAACTGTATCTGGTAACAGAAGGCTTGTGTTTTTATTTTGTTGTTAAAAATAAGTTAGTGTTTTGTGATTAAATAGAGGGGTGATTTTCTTTCTCGACACCACTGCTAGGCAGTCTGCAACACTCACAAACTTCAGCCTCACAATACAACACGAATCTGTCGAAGTATAGACCGTTTCTTTTAGGCAGCGTAGTGATTTGACAAACACAGAAAATGTACAGGAGCGAATCCCAACCTTAATTAATTTGAATATTCAACAAAGGAAGAAGCTTCACTGATTCACTAAGGCACAGAACACTCTCTGAATCCTTAGTTGAATTTTTGCCCCCATTTAAGATCTCTACCCAAGGCAGTTACAAACAGTTACAACTGCCCATGTGCTTGGTATATGCTTTGAAAAAAATCTTATCTGAACTTAACTAATTTACAACAGTCATATTCTAATAGACATAATACATTTCGAATTCAAATGTCTATGCCCATGTGCCTCACTCATGCCAATCATTTGCCTTAGCTGATATTGCGTGTACCCACACTTAGAATAATTCTGCCTGCTGCCAGCCTTAGTTTAATTTTATCATTTCTGCCAACTCATGCCAACACTTGTCCAGCTTTGTCTTGCCATCGTCAAGTCCCCACAGCCTTGCCTTGTCAAGCCAACAAACTTCCTTGCCTTGTCGATGCTACTGTTTGCATGTATGCCCCCATAGGTGCCATACGTCTGTCTTTGCCTTTGCACGTCCAAGCTGCCTTGCCAACACTCAAGCATCTTGAACACAATGCTGGACTTTAATACTTAGCCGCACAATTGCATTGTTTCCCCATGCCCATGCCAAGTCCGATGCACAAGTCCTTGCCATGCGCTCATGCCTCTACCGGCGTGCCCTCATCTAACAAACCACCCCCATCCCTTGAGCTCGATGCGCCTCATCGAGACTGTTTTGAGATAGTCATTGATTCGGTCATCAAATTGCCATAAATCCTTCGTCTTCTCCCAAACAACATCTGCTCCCACTCTTGCCTTTCCACTTTACCAAAAATTCAGTCTTGTTATTCTTCTTACTTGTGCCAACAACCTGGTGATCAAGGATCTCTTCTATCTCAGCATCAAACTATGACGGAATAGAAGGAGGTGTCCTCTTTGATCTGTTTCTATTCGGATCATCATTATCTGGGAAGTAAGGTTTCAAGAAACTCACATGGAAAGTGGGATGAATCTTTAACCTTTCAGCTTCAATTTGTGAGCAACCTCACCGACTTGTTGTACCACTTCAAATAGGCTGTTGTACTTGGGATCAATCCCCTATGCCGAATCTTACCCGCAATTTGCTTCCTGATATGGGGCGTGAGTTTCAGCAATACCTAGTCACGCACATTAACCTCTACTTCACGCGTCGCTGAGCCTTGCACAGGCTGTCTTGTGCCTCTGAAATCATTTTAGGTCTGTCCCTTGCAGGCCTGTAGCTGCTGGACATTTCCCTTGGTTCTTTGTTTTGGCAACATCTAATGCAGTCATGGGCTTTCTACCTAAAACAATCTCAAACAGACTTGTTTCTGTTGCTAATGTCTTGTGCAAATTGTCCGCCGCTGCCTCCTCACAAAGGAAACACCAATATATGCAAATAACCTTTCGTCTCCTGAGAATCTCTGTCATCAAGATTACCCCTTTAGTAGATTATCACATGAAGAAGCACACCTTCCTTAAAACCTTAGGAATCCAACCCAAACCATGTGGAAAACTACTATCCCATTTGTAATTTTAAGCTCTTAATGTCCAAACCTCTGTTTTCCTGCTTTGAAGTAACAATATCCCATTTGACCATTGCAAGCCTTACATTCTTGTCTATTTCTGCATCAAGGAGTGCATGTACTCTATTCATGTTTGATTTCCTAAAGAAATCATTGTGTCCAGAAGTAGTCTAAGCTAAAGTTGCAGTATCTATTGCATCCGTTAATCTATTCCTTCAGTTAGTTGGCAATGCATTATGTCGTTTCATTTGATCTTATTTTCAGGTAAAAAACAATTATCCAATAGCATCATCAGGACAAGATAAATGGTGCTGGGAGCAGAGTTTTATTGATTTAGAAGTTGGCGCTGAGGATGTTAAAGGGGTAGATTTTGTTCAA-AAAGGTTTCTGGGTCAACATAGTCTCAAGCCATGATGTGGAGGGCTTACTGACTCAATCAGATGGTTCTGGAATGAACTTGAACATCAAGGTTGGTTTAGTCCACCTCAAAAAGTTCTCTTAGATCTTCTAACTAACACGAGAAGCTCATTTTCTTTTTCTGGCTCTTGAATTGCAGAAGGGTTCTCAACACGTGTGCGTAGAATCTCCGGGAGTGCATGAGCTGAGCTTTCCAAATTCATGTATTTCTTTTGGGAGTTCATCTGTGATCATTGA-CACATCTAACCTTTCTGTATGATCCTTTTGGAGTTGGAATTTTTTCTATTGAACTAGTTCATTTATCATGCATGTCTTCTCATATACTTTCTTCTGTTTGTAGCCTATCTATTTGAAAGGCGAGAGCTATCTTTTGAAGGGTCATGT-CCATGTTGAATCAAGCTCGTTTAGTAGCGTTGAGGGCTTGCCTG</genome_strand>
        <mrna_strand>AAAACGTCAAACCTCAAGTGAAACTTACTGATGAGAGTGGCCATTTTTGCTTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCCTGGTGATTATCGCTTATCTGCAATCCCAGCAAAACTTGAGAACGCTAAAGAGCTTCTATTTTCTCCTTCTCATATTGATGTTTCAGTCAGGAGTCCGATATTGGATGTCAAATTCTATCAG.........................................................................................................................................................................GCACAAGTAAGTATACATGGTTCTGTTGTTTGTAAGGAGAAATGTGGTTCTTCAGTTTCTTTGACTCTTCTGCGCCTGGATGGGAGAAATAAAGACGATAAGAAGACAATTGGTTTGGCAAATGAGAGTAATGAATTTTTCTTCTCAAATGTTCTCCCTGGTAAATACAGGGTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAACAATTATCCAATAGCATCATCAGGACAAGATAAATGGTGCTGGGAGCAGAGTTTTATCAATTTAGAAGTTGGCGCTGAGGATGTTAAAGGGGTAGATTTTGTTCAACAAAGGTTTCTGGGTCAACATAATCTCAAGTCATGATGCGGATGGTTTACTGACTCAATCAGATGGTTCTAGAATGAACTTGAACATCAAG.......................................................................................AAGGGTTCTCAACACGTGTGCGTAGAATCTCCGGGAGTGCATGAGTTGAGCTTTCCAAATTCATGTATTTCTTTTGGGAGTTCATCTGTGATCATTGACCACATCTAACCTTTTC.......................................................................................GCTATCTATTTGAAAGGCGAGAGCTATCTTTTGAAGGGTCATGTCCCATGTTGAATCAAGCTCATTTAGTAGCATTGAGGGTTTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451596" ref_strand="+" ref_description="SGN-E451596 [cSTS-13-N11]">
      <seq>cgaggcagtttctttgactcttctgctcctggatgggagaaaataaagacgataagaagacaattggtttggcaaatgagagtaatgaatttttcttctcaaatgttctccctggtaaatacagggttgaggtaaaaaacaattatccaatagcatcatcaggacaagataaatggtgctgggagcagagttttatcaatttagaagttggcgctgaggatgttaaaggggtagattttgttcaaaaaggtttctgggtcaacataatctcaagtcatgatgcggatggtttactgactcaatcagatggttctagaatgaacttgaacatcaagaatggttctcaacacgtgtgcgtagaatctccgggagtgcatgagttgagctttccaaattcatgtatttcttttgggagttcatctgtgatcattgacacatctaacctttcgcctatctatatgaaaggcgagagctatcttttgaagggtcatgtccatgttgaatcaagctcatttagtagcattgagggtttgcctgagaatataccgttggacattatggacagcgatggttctgttgttgatggtctatcggccagacgtgtgccttaccgagttgatcaatcgagtgcagccatctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6970" stop="10557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7265" g_stop="7394" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7395" i_stop="9572" i_length="2178">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9573" g_stop="9776" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="335" r_length="204" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9777" i_stop="9863" i_length="87">
            <donor d_prob="0.931" d_score="0.94"/>
            <acceptor a_prob="0.899" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9864" g_stop="9977" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="449" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9978" i_stop="10064" i_length="87">
            <donor d_prob="0.472" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10065" g_stop="10257" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="642" r_length="193" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E451596" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7265" e_stop="7394"/>
          <exon e_start="9573" e_stop="9776"/>
          <exon e_start="9864" e_stop="9977"/>
          <exon e_start="10065" e_stop="10257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCAGTTTCTTTGACTCTTCTGCGCCTGGATGGGAG-AAATAAAGACGATAAGAAGACAATTGGTTTGGCAAATGAGAGTAATGAATTTTTCTTCTCAAATGTTCTCCCTGGTAAATACAGGGTTGAGGTAACACCCCCACCTATGGCCTTGGTTCTTCCTGTTTAGGACCCTTTGCATTTCTGTCTGTGTATTTACATCCCAATGTCTTTTCCTTTGCCTTTTATCACCCTTTGCATTTCTACATTTACATCCCAATGTCTTTCCTTTGCTTTTACCCCGCTTGTTATTAGCTAACTGTATCTGGTAACAGAAGGCTTGTGTTTTTATTTTGTTGTTAAAAATAAGTTAGTGTTTTGTGATTAAATAGAGGGGTGATTTTCTTTCTCGACACCACTGCTAGGCAGTCTGCAACACTCACAAACTTCAGCCTCACAATACAACACGAATCTGTCGAAGTATAGACCGTTTCTTTTAGGCAGCGTAGTGATTTGACAAACACAGAAAATGTACAGGAGCGAATCCCAACCTTAATTAATTTGAATATTCAACAAAGGAAGAAGCTTCACTGATTCACTAAGGCACAGAACACTCTCTGAATCCTTAGTTGAATTTTTGCCCCCATTTAAGATCTCTACCCAAGGCAGTTACAAACAGTTACAACTGCCCATGTGCTTGGTATATGCTTTGAAAAAAATCTTATCTGAACTTAACTAATTTACAACAGTCATATTCTAATAGACATAATACATTTCGAATTCAAATGTCTATGCCCATGTGCCTCACTCATGCCAATCATTTGCCTTAGCTGATATTGCGTGTACCCACACTTAGAATAATTCTGCCTGCTGCCAGCCTTAGTTTAATTTTATCATTTCTGCCAACTCATGCCAACACTTGTCCAGCTTTGTCTTGCCATCGTCAAGTCCCCACAGCCTTGCCTTGTCAAGCCAACAAACTTCCTTGCCTTGTCGATGCTACTGTTTGCATGTATGCCCCCATAGGTGCCATACGTCTGTCTTTGCCTTTGCACGTCCAAGCTGCCTTGCCAACACTCAAGCATCTTGAACACAATGCTGGACTTTAATACTTAGCCGCACAATTGCATTGTTTCCCCATGCCCATGCCAAGTCCGATGCACAAGTCCTTGCCATGCGCTCATGCCTCTACCGGCGTGCCCTCATCTAACAAACCACCCCCATCCCTTGAGCTCGATGCGCCTCATCGAGACTGTTTTGAGATAGTCATTGATTCGGTCATCAAATTGCCATAAATCCTTCGTCTTCTCCCAAACAACATCTGCTCCCACTCTTGCCTTTCCACTTTACCAAAAATTCAGTCTTGTTATTCTTCTTACTTGTGCCAACAACCTGGTGATCAAGGATCTCTTCTATCTCAGCATCAAACTATGACGGAATAGAAGGAGGTGTCCTCTTTGATCTGTTTCTATTCGGATCATCATTATCTGGGAAGTAAGGTTTCAAGAAACTCACATGGAAAGTGGGATGAATCTTTAACCTTTCAGCTTCAATTTGTGAGCAACCTCACCGACTTGTTGTACCACTTCAAATAGGCTGTTGTACTTGGGATCAATCCCCTATGCCGAATCTTACCCGCAATTTGCTTCCTGATATGGGGCGTGAGTTTCAGCAATACCTAGTCACGCACATTAACCTCTACTTCACGCGTCGCTGAGCCTTGCACAGGCTGTCTTGTGCCTCTGAAATCATTTTAGGTCTGTCCCTTGCAGGCCTGTAGCTGCTGGACATTTCCCTTGGTTCTTTGTTTTGGCAACATCTAATGCAGTCATGGGCTTTCTACCTAAAACAATCTCAAACAGACTTGTTTCTGTTGCTAATGTCTTGTGCAAATTGTCCGCCGCTGCCTCCTCACAAAGGAAACACCAATATATGCAAATAACCTTTCGTCTCCTGAGAATCTCTGTCATCAAGATTACCCCTTTAGTAGATTATCACATGAAGAAGCACACCTTCCTTAAAACCTTAGGAATCCAACCCAAACCATGTGGAAAACTACTATCCCATTTGTAATTTTAAGCTCTTAATGTCCAAACCTCTGTTTTCCTGCTTTGAAGTAACAATATCCCATTTGACCATTGCAAGCCTTACATTCTTGTCTATTTCTGCATCAAGGAGTGCATGTACTCTATTCATGTTTGATTTCCTAAAGAAATCATTGTGTCCAGAAGTAGTCTAAGCTAAAGTTGCAGTATCTATTGCATCCGTTAATCTATTCCTTCAGTTAGTTGGCAATGCATTATGTCGTTTCATTTGATCTTATTTTCAGGTAAAAAACAATTATCCAATAGCATCATCAGGACAAGATAAATGGTGCTGGGAGCAGAGTTTTATTGATTTAGAAGTTGGCGCTGAGGATGTTAAAGGGGTAGATTTTGTTCAAAAAGGTTTCTGGGTCAACATAGTCTCAAGCCATGATGTGGAGGGCTTACTGACTCAATCAGATGGTTCTGGAATGAACTTGAACATCAAGGTTGGTTTAGTCCACCTCAAAAAGTTCTCTTAGATCTTCTAACTAACACGAGAAGCTCATTTTCTTTTTCTGGCTCTTGAATTGCAGAAGGGTTCTCAACACGTGTGCGTAGAATCTCCGGGAGTGCATGAGCTGAGCTTTCCAAATTCATGTATTTCTTTTGGGAGTTCATCTGTGATCATTGACACATCTAACCTTTCTGTATGATCCTTTTGGAGTTGGAATTTTTTCTATTGAACTAGTTCATTTATCATGCATGTCTTCTCATATACTTTCTTCTGTTTGTAGCCTATCTATTTGAAAGGCGAGAGCTATCTTTTGAAGGGTCATGTCCATGTTGAATCAAGCTCGTTTAGTAGCGTTGAGGGCTTGCCTGAGAATATACCGTTGGACATTTTGGACAGTGAAGGTTCTGTTGTTGATGGTCTATTGGCAAGACGTGTGCCTTACGGAGTTGATCAATCGAGTGCAGCCATCTACG</genome_strand>
        <mrna_strand>CGAGGCAGTTTCTTTGACTCTTCTGCTCCTGGATGGGAGAAAATAAAGACGATAAGAAGACAATTGGTTTGGCAAATGAGAGTAATGAATTTTTCTTCTCAAATGTTCTCCCTGGTAAATACAGGGTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAACAATTATCCAATAGCATCATCAGGACAAGATAAATGGTGCTGGGAGCAGAGTTTTATCAATTTAGAAGTTGGCGCTGAGGATGTTAAAGGGGTAGATTTTGTTCAAAAAGGTTTCTGGGTCAACATAATCTCAAGTCATGATGCGGATGGTTTACTGACTCAATCAGATGGTTCTAGAATGAACTTGAACATCAAG.......................................................................................AATGGTTCTCAACACGTGTGCGTAGAATCTCCGGGAGTGCATGAGTTGAGCTTTCCAAATTCATGTATTTCTTTTGGGAGTTCATCTGTGATCATTGACACATCTAACCTTTCG.......................................................................................CCTATCTATATGAAAGGCGAGAGCTATCTTTTGAAGGGTCATGTCCATGTTGAATCAAGCTCATTTAGTAGCATTGAGGGTTTGCCTGAGAATATACCGTTGGACATTATGGACAGCGATGGTTCTGTTGTTGATGGTCTATCGGCCAGACGTGTGCCTTACCGAGTTGATCAATCGAGTGCAGCCATCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561270" ref_strand="+" ref_description="SGN-E561270 [17236]">
      <seq>ctggatgggagaaataaagacgataagaagacaattggtttggcaaatgagagtaatgaatttttcttctcaaatgttctccctggtaaatacaggttgaggtaaaaaacaattatccaatagcatcatcaggacaagataaatggtgctgggagcagagttttatcaatttagaagttggcgctgaggatgttaaaggggtagattttgttcaaaaaggtttctgggtcaacataatctcaagccatgatgtggatggtttactgactcaatcagatggttctagaatgaacttgaacatcaagaagggttctcaacacgtgtgcgtagaatctccgggagtgcatgagctgagctttccaaattcatgtatttcttttgggagttcatctgtgatcattgacacatctaacctttctcctatctatttgaaaggcgagagctatcttttgaagggtcatgtccatgttgaatcaagctcatttagtagcgttgagggcttgcctgagaatataccgttggacattttggacagtgatggttctgttgttgatggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6993" stop="10503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7293" g_stop="7394" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7395" i_stop="9572" i_length="2178">
            <donor d_prob="0.806" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9573" g_stop="9776" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="305" r_length="204" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9777" i_stop="9863" i_length="87">
            <donor d_prob="0.931" d_score="0.94"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9864" g_stop="9977" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="419" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9978" i_stop="10064" i_length="87">
            <donor d_prob="0.472" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10065" g_stop="10203" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="558" r_length="139" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E561270" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7293" e_stop="7394"/>
          <exon e_start="9573" e_stop="9776"/>
          <exon e_start="9864" e_stop="9977"/>
          <exon e_start="10065" e_stop="10203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATGGGAGAAATAAAGACGATAAGAAGACAATTGGTTTGGCAAATGAGAGTAATGAATTTTTCTTCTCAAATGTTCTCCCTGGTAAATACAGGGTTGAGGTAACACCCCCACCTATGGCCTTGGTTCTTCCTGTTTAGGACCCTTTGCATTTCTGTCTGTGTATTTACATCCCAATGTCTTTTCCTTTGCCTTTTATCACCCTTTGCATTTCTACATTTACATCCCAATGTCTTTCCTTTGCTTTTACCCCGCTTGTTATTAGCTAACTGTATCTGGTAACAGAAGGCTTGTGTTTTTATTTTGTTGTTAAAAATAAGTTAGTGTTTTGTGATTAAATAGAGGGGTGATTTTCTTTCTCGACACCACTGCTAGGCAGTCTGCAACACTCACAAACTTCAGCCTCACAATACAACACGAATCTGTCGAAGTATAGACCGTTTCTTTTAGGCAGCGTAGTGATTTGACAAACACAGAAAATGTACAGGAGCGAATCCCAACCTTAATTAATTTGAATATTCAACAAAGGAAGAAGCTTCACTGATTCACTAAGGCACAGAACACTCTCTGAATCCTTAGTTGAATTTTTGCCCCCATTTAAGATCTCTACCCAAGGCAGTTACAAACAGTTACAACTGCCCATGTGCTTGGTATATGCTTTGAAAAAAATCTTATCTGAACTTAACTAATTTACAACAGTCATATTCTAATAGACATAATACATTTCGAATTCAAATGTCTATGCCCATGTGCCTCACTCATGCCAATCATTTGCCTTAGCTGATATTGCGTGTACCCACACTTAGAATAATTCTGCCTGCTGCCAGCCTTAGTTTAATTTTATCATTTCTGCCAACTCATGCCAACACTTGTCCAGCTTTGTCTTGCCATCGTCAAGTCCCCACAGCCTTGCCTTGTCAAGCCAACAAACTTCCTTGCCTTGTCGATGCTACTGTTTGCATGTATGCCCCCATAGGTGCCATACGTCTGTCTTTGCCTTTGCACGTCCAAGCTGCCTTGCCAACACTCAAGCATCTTGAACACAATGCTGGACTTTAATACTTAGCCGCACAATTGCATTGTTTCCCCATGCCCATGCCAAGTCCGATGCACAAGTCCTTGCCATGCGCTCATGCCTCTACCGGCGTGCCCTCATCTAACAAACCACCCCCATCCCTTGAGCTCGATGCGCCTCATCGAGACTGTTTTGAGATAGTCATTGATTCGGTCATCAAATTGCCATAAATCCTTCGTCTTCTCCCAAACAACATCTGCTCCCACTCTTGCCTTTCCACTTTACCAAAAATTCAGTCTTGTTATTCTTCTTACTTGTGCCAACAACCTGGTGATCAAGGATCTCTTCTATCTCAGCATCAAACTATGACGGAATAGAAGGAGGTGTCCTCTTTGATCTGTTTCTATTCGGATCATCATTATCTGGGAAGTAAGGTTTCAAGAAACTCACATGGAAAGTGGGATGAATCTTTAACCTTTCAGCTTCAATTTGTGAGCAACCTCACCGACTTGTTGTACCACTTCAAATAGGCTGTTGTACTTGGGATCAATCCCCTATGCCGAATCTTACCCGCAATTTGCTTCCTGATATGGGGCGTGAGTTTCAGCAATACCTAGTCACGCACATTAACCTCTACTTCACGCGTCGCTGAGCCTTGCACAGGCTGTCTTGTGCCTCTGAAATCATTTTAGGTCTGTCCCTTGCAGGCCTGTAGCTGCTGGACATTTCCCTTGGTTCTTTGTTTTGGCAACATCTAATGCAGTCATGGGCTTTCTACCTAAAACAATCTCAAACAGACTTGTTTCTGTTGCTAATGTCTTGTGCAAATTGTCCGCCGCTGCCTCCTCACAAAGGAAACACCAATATATGCAAATAACCTTTCGTCTCCTGAGAATCTCTGTCATCAAGATTACCCCTTTAGTAGATTATCACATGAAGAAGCACACCTTCCTTAAAACCTTAGGAATCCAACCCAAACCATGTGGAAAACTACTATCCCATTTGTAATTTTAAGCTCTTAATGTCCAAACCTCTGTTTTCCTGCTTTGAAGTAACAATATCCCATTTGACCATTGCAAGCCTTACATTCTTGTCTATTTCTGCATCAAGGAGTGCATGTACTCTATTCATGTTTGATTTCCTAAAGAAATCATTGTGTCCAGAAGTAGTCTAAGCTAAAGTTGCAGTATCTATTGCATCCGTTAATCTATTCCTTCAGTTAGTTGGCAATGCATTATGTCGTTTCATTTGATCTTATTTTCAGGTAAAAAACAATTATCCAATAGCATCATCAGGACAAGATAAATGGTGCTGGGAGCAGAGTTTTATTGATTTAGAAGTTGGCGCTGAGGATGTTAAAGGGGTAGATTTTGTTCAAAAAGGTTTCTGGGTCAACATAGTCTCAAGCCATGATGTGGAGGGCTTACTGACTCAATCAGATGGTTCTGGAATGAACTTGAACATCAAGGTTGGTTTAGTCCACCTCAAAAAGTTCTCTTAGATCTTCTAACTAACACGAGAAGCTCATTTTCTTTTTCTGGCTCTTGAATTGCAGAAGGGTTCTCAACACGTGTGCGTAGAATCTCCGGGAGTGCATGAGCTGAGCTTTCCAAATTCATGTATTTCTTTTGGGAGTTCATCTGTGATCATTGACACATCTAACCTTTCTGTATGATCCTTTTGGAGTTGGAATTTTTTCTATTGAACTAGTTCATTTATCATGCATGTCTTCTCATATACTTTCTTCTGTTTGTAGCCTATCTATTTGAAAGGCGAGAGCTATCTTTTGAAGGGTCATGTCCATGTTGAATCAAGCTCGTTTAGTAGCGTTGAGGGCTTGCCTGAGAATATACCGTTGGACATTTTGGACAGTGAAGGTTCTGTTGTTGATGGTC</genome_strand>
        <mrna_strand>CTGGATGGGAGAAATAAAGACGATAAGAAGACAATTGGTTTGGCAAATGAGAGTAATGAATTTTTCTTCTCAAATGTTCTCCCTGGTAAATACA-GGTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAACAATTATCCAATAGCATCATCAGGACAAGATAAATGGTGCTGGGAGCAGAGTTTTATCAATTTAGAAGTTGGCGCTGAGGATGTTAAAGGGGTAGATTTTGTTCAAAAAGGTTTCTGGGTCAACATAATCTCAAGCCATGATGTGGATGGTTTACTGACTCAATCAGATGGTTCTAGAATGAACTTGAACATCAAG.......................................................................................AAGGGTTCTCAACACGTGTGCGTAGAATCTCCGGGAGTGCATGAGCTGAGCTTTCCAAATTCATGTATTTCTTTTGGGAGTTCATCTGTGATCATTGACACATCTAACCTTTCT.......................................................................................CCTATCTATTTGAAAGGCGAGAGCTATCTTTTGAAGGGTCATGTCCATGTTGAATCAAGCTCATTTAGTAGCGTTGAGGGCTTGCCTGAGAATATACCGTTGGACATTTTGGACAGTGATGGTTCTGTTGTTGATGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463839" ref_strand="+" ref_description="SGN-E463839 [cPRO-16-K9]">
      <seq>tggtgctgggagcagagttttatcaatttagaagttggcgctgaggatgttaaaggggtagattttgttcaaaaaggtttctgggtcaacataatctcaagccatgatgtggatggtttactgactcaatcagatggttctagaatgaacttgaacatcaagaagggttctcaacacgtgtgcgtagaatctccgggagtgcatgagctgagctttccaaattcatgtatttcttttgggagttcatctgtgatcattgacacatctaaactttctcctatctatttgaaaggcgagagctatcttttgaagggtcatgtccatgttgaatcaagctcatttattaacgttgagggcttgcctgagaatataccgttggacatttttgacagcgatggttctgttgttgatgggctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9315" stop="10506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9615" g_stop="9776" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9777" i_stop="9863" i_length="87">
            <donor d_prob="0.931" d_score="0.94"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9864" g_stop="9977" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="276" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9978" i_stop="10064" i_length="87">
            <donor d_prob="0.472" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10065" g_stop="10206" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="418" r_length="142" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E463839" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9615" e_stop="9776"/>
          <exon e_start="9864" e_stop="9977"/>
          <exon e_start="10065" e_stop="10206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCTGGGAGCAGAGTTTTATTGATTTAGAAGTTGGCGCTGAGGATGTTAAAGGGGTAGATTTTGTTCAAAAAGGTTTCTGGGTCAACATAGTCTCAAGCCATGATGTGGAGGGCTTACTGACTCAATCAGATGGTTCTGGAATGAACTTGAACATCAAGGTTGGTTTAGTCCACCTCAAAAAGTTCTCTTAGATCTTCTAACTAACACGAGAAGCTCATTTTCTTTTTCTGGCTCTTGAATTGCAGAAGGGTTCTCAACACGTGTGCGTAGAATCTCCGGGAGTGCATGAGCTGAGCTTTCCAAATTCATGTATTTCTTTTGGGAGTTCATCTGTGATCATTGACACATCTAACCTTTCTGTATGATCCTTTTGGAGTTGGAATTTTTTCTATTGAACTAGTTCATTTATCATGCATGTCTTCTCATATACTTTCTTCTGTTTGTAGCCTATCTATTTGAAAGGCGAGAGCTATCTTTTGAAGGGTCATGTCCATGTTGAATCAAGCTCGTTTAGTAGCGTTGAGGGCTTGCCTGAGAATATACCGTTGGACATTTTGGACAGTGAAGGTTCTGTTGTTGATGGTCTAT</genome_strand>
        <mrna_strand>TGGTGCTGGGAGCAGAGTTTTATCAATTTAGAAGTTGGCGCTGAGGATGTTAAAGGGGTAGATTTTGTTCAAAAAGGTTTCTGGGTCAACATAATCTCAAGCCATGATGTGGATGGTTTACTGACTCAATCAGATGGTTCTAGAATGAACTTGAACATCAAG.......................................................................................AAGGGTTCTCAACACGTGTGCGTAGAATCTCCGGGAGTGCATGAGCTGAGCTTTCCAAATTCATGTATTTCTTTTGGGAGTTCATCTGTGATCATTGACACATCTAAACTTTCT.......................................................................................CCTATCTATTTGAAAGGCGAGAGCTATCTTTTGAAGGGTCATGTCCATGTTGAATCAAGCTCATTTATTAACGTTGAGGGCTTGCCTGAGAATATACCGTTGGACATTTTTGACAGCGATGGTTCTGTTGTTGATGGGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407055" ref_strand="+" ref_description="SGN-E407055 [PPI-5-J6]">
      <seq>agaagttggcgctgaggatgttaaaggggtagattttgttcaaaaaggtttctgggtcaacataatctcaagtcatgatgcggatggtttactgactcaatcagatggttctagaatgaacttgaacatcaagaagggttctcaacacgtgtgcgtagaatctccgggagtgcatgagttgagctttccaaattcatgtatttcttttgggagttcatctgtgatcattgacacatctaacctttcgcctatctatttgaaaggcgagagctatcttttgaagggtcatgtccatgttgaatcaagctcatttagtagcattgagggtttgcctgagaatataccgttggacattttggacagtgatggttctgttgttgatggtctatcggcaagacgtgtgccttacggagttgatcaatcgagtgcagccatctatgaattttccatgtgggctagtcctggaggaaaatttacttttgttcctcgagatgcacgggatgatggagggaaaaaaatattattttatcccacacagcagcatgttgccgtgatggaagatggctgccaatcttcaattcctccttttgctggtcgacttgggatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9344" stop="12106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9644" g_stop="9776" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9777" i_stop="9863" i_length="87">
            <donor d_prob="0.931" d_score="0.94"/>
            <acceptor a_prob="0.899" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9864" g_stop="9977" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="247" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9978" i_stop="10064" i_length="87">
            <donor d_prob="0.472" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10065" g_stop="10315" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="498" r_length="251" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10316" i_stop="11614" i_length="1299">
            <donor d_prob="0.945" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11615" g_stop="11660" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="544" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11661" i_stop="11741" i_length="81">
            <donor d_prob="0.919" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11742" g_stop="11806" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="609" r_length="65" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E407055" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9644" e_stop="9776"/>
          <exon e_start="9864" e_stop="9977"/>
          <exon e_start="10065" e_stop="10315"/>
          <exon e_start="11615" e_stop="11660"/>
          <exon e_start="11742" e_stop="11806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTTGGCGCTGAGGATGTTAAAGGGGTAGATTTTGTTCAAAAAGGTTTCTGGGTCAACATAGTCTCAAGCCATGATGTGGAGGGCTTACTGACTCAATCAGATGGTTCTGGAATGAACTTGAACATCAAGGTTGGTTTAGTCCACCTCAAAAAGTTCTCTTAGATCTTCTAACTAACACGAGAAGCTCATTTTCTTTTTCTGGCTCTTGAATTGCAGAAGGGTTCTCAACACGTGTGCGTAGAATCTCCGGGAGTGCATGAGCTGAGCTTTCCAAATTCATGTATTTCTTTTGGGAGTTCATCTGTGATCATTGACACATCTAACCTTTCTGTATGATCCTTTTGGAGTTGGAATTTTTTCTATTGAACTAGTTCATTTATCATGCATGTCTTCTCATATACTTTCTTCTGTTTGTAGCCTATCTATTTGAAAGGCGAGAGCTATCTTTTGAAGGGTCATGTCCATGTTGAATCAAGCTCGTTTAGTAGCGTTGAGGGCTTGCCTGAGAATATACCGTTGGACATTTTGGACAGTGAAGGTTCTGTTGTTGATGGTCTATTGGCAAGACGTGTGCCTTACGGAGTTGATCAATCGAGTGCAGCCATCTACGAATTTTCCATGTGGGCTAGTCCGGGAGGAAAATTTACTTTTATTCCTCGAGATGCACGGTGTGTGAATTATATTTTGATTTTATTCTTTTTATGCTTTCTGCCACTCGTTCTCTCTGTCTCATTATTCTTTTTATGCTCTTCTGCTACTCGTTCTCTCTCTGTCTCTCATTTTGGTCTTTCCTTCAAAACAAAAATACATAGATTGATAAGGAACTTTAAGGAATATGACCTTTTGCCTGTGATAGATGTTCATGTATTGATTGTTCTAGTGTGATTGTTTTTATTCCTTAAGGGAGAGAAAGTGTAACCTTTTGTTGTAATTCAATCTGCCTTTGTTTAGCTATATATCTATTTTATGGATTCTTTGTATCCGAGTCAAGTAACCTGCTTAGTTTGAATGAGTTGTATAGACAATAAAGCCTTCAGACGGACTTGACATGATAAAGAACCTTAATTTGCCTGATTCTACAACAACATACCCAGTGAAATCTCACAAAATGGTGTCTGAAGAGGGTAGTGTACGCAGACCTTACCATTACCTCATGGAGGTAAAGAGGCTGTTTCTGAAAGACCTTTGACTCAAGTGCATCCAACCCAAGTAAAAAAAGAAGAAAACAGTGGAAGAAAGGATAGCGGTTAATAAGAAAAGCAGTGTAAAGTCTACAAGAGAAAAACAACATCAAAATAGTGTGATAATCGAAATACACTAAACTACATATGTCAAGGACACAGGGATCAACTAGTCCTACAACAGGCACTAGGGCTACGTAAGGCAAGATAACACTCTACTCCTTCCTATCTATGGTCATGTCCTCGGTAATATGAAGGTTCACCATGTGTTGTCTAATCAGCTCTCCCCAATACATTTTCAGCCTACTCCAACCCCTCCGCATCCCCTACACGCACCTCCTCGCACATGTCCAAACCATCTGTCTTGCTTCCTTCATCTTGTCCACCACAGGGGCCATCTCACCTTCTCCCGGATAACCTCATACCTGATCTTGTGAGTCCTAGTGTGCCCACACATCCATCTCAACATCCTCATCTCTGCAACATGTATCTTCTCAACATCCTCCTCTGTACCTTCATCTGCCTGATTCTGACTTTCCAAAATATATGCTCACTTTTTTAGCTGTATTTTTCGAGCTTGTTTCATGCACTTTGTAGTGTGATGCACATGGTATTAGATGGCAGAATGTTTGTAATTCAAAGATTAGAGTAAATGTGTTTCCTGACATGCTCAAATGCTTTGAGACATTGCCTTGCACACAATCAAGAATAGATGTATTTTTAAATGCTACTTTGTTATAATTCCTCAGCTTTTCATGCATTTCTAATTGTTGTTTCATGTTTCAGGGATGATGGCGGGAAAAAAATATTATTTTATCCCACACAGCAGCATGTATGTGGAATTGAAAGTTTTAATCAAAGTAGTTTTTGTGTATCTACTCTTAGTTTTGAAGTCTTTCTTTGCTTTCTCTAGGTTGCTGTGATGGAAGATGGCTGCCAATCTTCAATTCCTCCTTTTGCTGGTCGACTTGGGATGTA</genome_strand>
        <mrna_strand>AGAAGTTGGCGCTGAGGATGTTAAAGGGGTAGATTTTGTTCAAAAAGGTTTCTGGGTCAACATAATCTCAAGTCATGATGCGGATGGTTTACTGACTCAATCAGATGGTTCTAGAATGAACTTGAACATCAAG.......................................................................................AAGGGTTCTCAACACGTGTGCGTAGAATCTCCGGGAGTGCATGAGTTGAGCTTTCCAAATTCATGTATTTCTTTTGGGAGTTCATCTGTGATCATTGACACATCTAACCTTTCG.......................................................................................CCTATCTATTTGAAAGGCGAGAGCTATCTTTTGAAGGGTCATGTCCATGTTGAATCAAGCTCATTTAGTAGCATTGAGGGTTTGCCTGAGAATATACCGTTGGACATTTTGGACAGTGATGGTTCTGTTGTTGATGGTCTATCGGCAAGACGTGTGCCTTACGGAGTTGATCAATCGAGTGCAGCCATCTATGAATTTTCCATGTGGGCTAGTCCTGGAGGAAAATTTACTTTTGTTCCTCGAGATGCACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATGGAGGGAAAAAAATATTATTTTATCCCACACAGCAGCAT.................................................................................GTTGCCGTGATGGAAGATGGCTGCCAATCTTCAATTCCTCCTTTTGCTGGTCGACTTGGGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313256" ref_strand="+" ref_description="SGN-E313256 [cTOA-18-D15]">
      <seq>tgagctttccaaattcatgtatttcttttgggagtgcatctgtgatcattgacacatgtaacctttctcctatctatttgaaaggcgagagctatcttttgaagggtcatgtccatgttgaatcaagctcgtttagtagcgttgagggcttgcctgagaatataccgttggacattttggacagtgaaggttctgttgttgatggtctattggcaagacgtgtgccttacggagttgatcaatcgagtgcagccatctacgaattttccatgtgggctagtccgggaggaaaatttacttttattcctcgagatgcacgggatgatggcgggaaaaaaatattattttatcccacacagcagcatgttgctgtgatggaagatggctgccaatcttcaattcctccttttgctggtcgacttgggatgtatatagaaggatcagtttctccccctctcaatgatgttgttgtcaaaataattgctacaggagacagccaaagtgctccacttaagcaaggcgatttagcacttcaaactaccacagggaccgatggcttatatgtcgcanggcctctatatgatgatataagttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9610" stop="12273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9910" g_stop="9977" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9978" i_stop="10064" i_length="87">
            <donor d_prob="0.472" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10065" g_stop="10315" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="319" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10316" i_stop="11614" i_length="1299">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11615" g_stop="11660" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="365" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11661" i_stop="11741" i_length="81">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11742" g_stop="11973" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="597" r_length="232" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E313256" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9910" e_stop="9977"/>
          <exon e_start="10065" e_stop="10315"/>
          <exon e_start="11615" e_stop="11660"/>
          <exon e_start="11742" e_stop="11973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTTTCCAAATTCATGTATTTCTTTTGGGAGTTCATCTGTGATCATTGACACATCTAACCTTTCTGTATGATCCTTTTGGAGTTGGAATTTTTTCTATTGAACTAGTTCATTTATCATGCATGTCTTCTCATATACTTTCTTCTGTTTGTAGCCTATCTATTTGAAAGGCGAGAGCTATCTTTTGAAGGGTCATGTCCATGTTGAATCAAGCTCGTTTAGTAGCGTTGAGGGCTTGCCTGAGAATATACCGTTGGACATTTTGGACAGTGAAGGTTCTGTTGTTGATGGTCTATTGGCAAGACGTGTGCCTTACGGAGTTGATCAATCGAGTGCAGCCATCTACGAATTTTCCATGTGGGCTAGTCCGGGAGGAAAATTTACTTTTATTCCTCGAGATGCACGGTGTGTGAATTATATTTTGATTTTATTCTTTTTATGCTTTCTGCCACTCGTTCTCTCTGTCTCATTATTCTTTTTATGCTCTTCTGCTACTCGTTCTCTCTCTGTCTCTCATTTTGGTCTTTCCTTCAAAACAAAAATACATAGATTGATAAGGAACTTTAAGGAATATGACCTTTTGCCTGTGATAGATGTTCATGTATTGATTGTTCTAGTGTGATTGTTTTTATTCCTTAAGGGAGAGAAAGTGTAACCTTTTGTTGTAATTCAATCTGCCTTTGTTTAGCTATATATCTATTTTATGGATTCTTTGTATCCGAGTCAAGTAACCTGCTTAGTTTGAATGAGTTGTATAGACAATAAAGCCTTCAGACGGACTTGACATGATAAAGAACCTTAATTTGCCTGATTCTACAACAACATACCCAGTGAAATCTCACAAAATGGTGTCTGAAGAGGGTAGTGTACGCAGACCTTACCATTACCTCATGGAGGTAAAGAGGCTGTTTCTGAAAGACCTTTGACTCAAGTGCATCCAACCCAAGTAAAAAAAGAAGAAAACAGTGGAAGAAAGGATAGCGGTTAATAAGAAAAGCAGTGTAAAGTCTACAAGAGAAAAACAACATCAAAATAGTGTGATAATCGAAATACACTAAACTACATATGTCAAGGACACAGGGATCAACTAGTCCTACAACAGGCACTAGGGCTACGTAAGGCAAGATAACACTCTACTCCTTCCTATCTATGGTCATGTCCTCGGTAATATGAAGGTTCACCATGTGTTGTCTAATCAGCTCTCCCCAATACATTTTCAGCCTACTCCAACCCCTCCGCATCCCCTACACGCACCTCCTCGCACATGTCCAAACCATCTGTCTTGCTTCCTTCATCTTGTCCACCACAGGGGCCATCTCACCTTCTCCCGGATAACCTCATACCTGATCTTGTGAGTCCTAGTGTGCCCACACATCCATCTCAACATCCTCATCTCTGCAACATGTATCTTCTCAACATCCTCCTCTGTACCTTCATCTGCCTGATTCTGACTTTCCAAAATATATGCTCACTTTTTTAGCTGTATTTTTCGAGCTTGTTTCATGCACTTTGTAGTGTGATGCACATGGTATTAGATGGCAGAATGTTTGTAATTCAAAGATTAGAGTAAATGTGTTTCCTGACATGCTCAAATGCTTTGAGACATTGCCTTGCACACAATCAAGAATAGATGTATTTTTAAATGCTACTTTGTTATAATTCCTCAGCTTTTCATGCATTTCTAATTGTTGTTTCATGTTTCAGGGATGATGGCGGGAAAAAAATATTATTTTATCCCACACAGCAGCATGTATGTGGAATTGAAAGTTTTAATCAAAGTAGTTTTTGTGTATCTACTCTTAGTTTTGAAGTCTTTCTTTGCTTTCTCTAGGTTGCTGTGATGGAAGATGGCTGCCAATCTTCAATTCCTCCTTTTGCTGGTCGACTTGGGATGTATATAGAAGGATCAGTTTCTCCCCCTCTCAATGATGTTGTTGTCAAAATAATTGCTACAGGAGACAGCCAAAGTGCTCCACTTAAGCAAGGCGATTTAGCACTTCAAACTACCACAGGGACCGATGGCTTATATGTCGCAGGGCCTCTATATGATGATATAAGTTATA</genome_strand>
        <mrna_strand>TGAGCTTTCCAAATTCATGTATTTCTTTTGGGAGTGCATCTGTGATCATTGACACATGTAACCTTTCT.......................................................................................CCTATCTATTTGAAAGGCGAGAGCTATCTTTTGAAGGGTCATGTCCATGTTGAATCAAGCTCGTTTAGTAGCGTTGAGGGCTTGCCTGAGAATATACCGTTGGACATTTTGGACAGTGAAGGTTCTGTTGTTGATGGTCTATTGGCAAGACGTGTGCCTTACGGAGTTGATCAATCGAGTGCAGCCATCTACGAATTTTCCATGTGGGCTAGTCCGGGAGGAAAATTTACTTTTATTCCTCGAGATGCACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATGGCGGGAAAAAAATATTATTTTATCCCACACAGCAGCAT.................................................................................GTTGCTGTGATGGAAGATGGCTGCCAATCTTCAATTCCTCCTTTTGCTGGTCGACTTGGGATGTATATAGAAGGATCAGTTTCTCCCCCTCTCAATGATGTTGTTGTCAAAATAATTGCTACAGGAGACAGCCAAAGTGCTCCACTTAAGCAAGGCGATTTAGCACTTCAAACTACCACAGGGACCGATGGCTTATATGTCGCANGGCCTCTATATGATGATATAAGTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316332" ref_strand="+" ref_description="SGN-E316332 [cTOA-25-K15]">
      <seq>atcattgacacatctaacctttctcctatctatttgaaaggcgagagctatcttttgaagggtcatgtccatgttgaatcaagctcgtttagtagcgttgagggcttgcctgagaatataccgttggacattttggacagtgaaggttctgttgttgatggtctattggcaagacgtgtgccttacggagttgatcaatcgagtgcagccatctacgaattttccatgtgggctagtccgggaggaaaatttacttttattcctcgagatgcacgggatgatggcgggaaaaaaatattattttatcccacacagcagcatgttgctgtgatggaagatggctgccaatcttcaattcctccttttgctggtcgacttgggatgtatatagaaggatcagtttctccccctctcaatgatgttgttgtcaaaataattgctacaggagacagccaaagtgctccacttaagcaaggcgatttagcacttcaaactaccacagggaccgatggcttatatgtcgcagggcctctatatgatgatataagttatactgttgaagcttcaaagccgggttaccatgtaaagcaagctggacctcattccttttcttgtcagaagctgggccaaatttcagtgcgtatatattctagagaagacgccaacgagccttttccatcagttctcttatcattaagtggagaagatggttacaggaacaatacagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9654" stop="12867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9954" g_stop="9977" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9978" i_stop="10064" i_length="87">
            <donor d_prob="0.472" d_score="0.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10065" g_stop="10315" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="275" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10316" i_stop="11614" i_length="1299">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11615" g_stop="11660" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="321" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11661" i_stop="11741" i_length="81">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11742" g_stop="11990" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="570" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11991" i_stop="12407" i_length="417">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12408" g_stop="12567" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="730" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E316332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9954" e_stop="9977"/>
          <exon e_start="10065" e_stop="10315"/>
          <exon e_start="11615" e_stop="11660"/>
          <exon e_start="11742" e_stop="11990"/>
          <exon e_start="12408" e_stop="12567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTGACACATCTAACCTTTCTGTATGATCCTTTTGGAGTTGGAATTTTTTCTATTGAACTAGTTCATTTATCATGCATGTCTTCTCATATACTTTCTTCTGTTTGTAGCCTATCTATTTGAAAGGCGAGAGCTATCTTTTGAAGGGTCATGTCCATGTTGAATCAAGCTCGTTTAGTAGCGTTGAGGGCTTGCCTGAGAATATACCGTTGGACATTTTGGACAGTGAAGGTTCTGTTGTTGATGGTCTATTGGCAAGACGTGTGCCTTACGGAGTTGATCAATCGAGTGCAGCCATCTACGAATTTTCCATGTGGGCTAGTCCGGGAGGAAAATTTACTTTTATTCCTCGAGATGCACGGTGTGTGAATTATATTTTGATTTTATTCTTTTTATGCTTTCTGCCACTCGTTCTCTCTGTCTCATTATTCTTTTTATGCTCTTCTGCTACTCGTTCTCTCTCTGTCTCTCATTTTGGTCTTTCCTTCAAAACAAAAATACATAGATTGATAAGGAACTTTAAGGAATATGACCTTTTGCCTGTGATAGATGTTCATGTATTGATTGTTCTAGTGTGATTGTTTTTATTCCTTAAGGGAGAGAAAGTGTAACCTTTTGTTGTAATTCAATCTGCCTTTGTTTAGCTATATATCTATTTTATGGATTCTTTGTATCCGAGTCAAGTAACCTGCTTAGTTTGAATGAGTTGTATAGACAATAAAGCCTTCAGACGGACTTGACATGATAAAGAACCTTAATTTGCCTGATTCTACAACAACATACCCAGTGAAATCTCACAAAATGGTGTCTGAAGAGGGTAGTGTACGCAGACCTTACCATTACCTCATGGAGGTAAAGAGGCTGTTTCTGAAAGACCTTTGACTCAAGTGCATCCAACCCAAGTAAAAAAAGAAGAAAACAGTGGAAGAAAGGATAGCGGTTAATAAGAAAAGCAGTGTAAAGTCTACAAGAGAAAAACAACATCAAAATAGTGTGATAATCGAAATACACTAAACTACATATGTCAAGGACACAGGGATCAACTAGTCCTACAACAGGCACTAGGGCTACGTAAGGCAAGATAACACTCTACTCCTTCCTATCTATGGTCATGTCCTCGGTAATATGAAGGTTCACCATGTGTTGTCTAATCAGCTCTCCCCAATACATTTTCAGCCTACTCCAACCCCTCCGCATCCCCTACACGCACCTCCTCGCACATGTCCAAACCATCTGTCTTGCTTCCTTCATCTTGTCCACCACAGGGGCCATCTCACCTTCTCCCGGATAACCTCATACCTGATCTTGTGAGTCCTAGTGTGCCCACACATCCATCTCAACATCCTCATCTCTGCAACATGTATCTTCTCAACATCCTCCTCTGTACCTTCATCTGCCTGATTCTGACTTTCCAAAATATATGCTCACTTTTTTAGCTGTATTTTTCGAGCTTGTTTCATGCACTTTGTAGTGTGATGCACATGGTATTAGATGGCAGAATGTTTGTAATTCAAAGATTAGAGTAAATGTGTTTCCTGACATGCTCAAATGCTTTGAGACATTGCCTTGCACACAATCAAGAATAGATGTATTTTTAAATGCTACTTTGTTATAATTCCTCAGCTTTTCATGCATTTCTAATTGTTGTTTCATGTTTCAGGGATGATGGCGGGAAAAAAATATTATTTTATCCCACACAGCAGCATGTATGTGGAATTGAAAGTTTTAATCAAAGTAGTTTTTGTGTATCTACTCTTAGTTTTGAAGTCTTTCTTTGCTTTCTCTAGGTTGCTGTGATGGAAGATGGCTGCCAATCTTCAATTCCTCCTTTTGCTGGTCGACTTGGGATGTATATAGAAGGATCAGTTTCTCCCCCTCTCAATGATGTTGTTGTCAAAATAATTGCTACAGGAGACAGCCAAAGTGCTCCACTTAAGCAAGGCGATTTAGCACTTCAAACTACCACAGGGACCGATGGCTTATATGTCGCAGGGCCTCTATATGATGATATAAGTTATACTGTTGAAGCTTCAAAGGTTTGAACGATCTTAACATTATAATAACTGCCCGAGCATTTCTTGTTTCTCCATAATGCTTTGTTGAGCAGATCAATAGCATCTCCAGATTATTAACAGTCTCTACATCCCTTTTGAGTTACGTTATCATTTTTCAATGATATATGGTGCATTTGTACTAATGGTATGGATTTCTTCGTATATGTGCATTGCTGGCCAAATAAGACTAGAAGTATGAATCCGGTGGATTATCATGAGACTGCTAGCAAATTTGTTCTTTCTTGTTGCTATAGTTTTCCTTGATTGCATTCAATCGTATGTTATCAGCTGTTCTTATTGGAGCTTATTTGCTACTAGGGTTCTGTGGACTCGACTAAAGTATAAGCTTTCTTTTCTCTTTCTGGTGGATCTACCTAATATTTCTTTCTTTATTTGCAGCCGGGTTACCATGTAAAGCAAGCTGGACCTCATTCCTTTTCTTGTCAGAAGCTGGGCCAAATTTCAGTGCGTATATATTCTAGAGAAGACGCCAACGAGCCTTTTCCATCAGTTCTCTTATCATTAAGTGGAGAAGATGGTTACAGGAACAATACAGTAT</genome_strand>
        <mrna_strand>ATCATTGACACATCTAACCTTTCT.......................................................................................CCTATCTATTTGAAAGGCGAGAGCTATCTTTTGAAGGGTCATGTCCATGTTGAATCAAGCTCGTTTAGTAGCGTTGAGGGCTTGCCTGAGAATATACCGTTGGACATTTTGGACAGTGAAGGTTCTGTTGTTGATGGTCTATTGGCAAGACGTGTGCCTTACGGAGTTGATCAATCGAGTGCAGCCATCTACGAATTTTCCATGTGGGCTAGTCCGGGAGGAAAATTTACTTTTATTCCTCGAGATGCACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATGGCGGGAAAAAAATATTATTTTATCCCACACAGCAGCAT.................................................................................GTTGCTGTGATGGAAGATGGCTGCCAATCTTCAATTCCTCCTTTTGCTGGTCGACTTGGGATGTATATAGAAGGATCAGTTTCTCCCCCTCTCAATGATGTTGTTGTCAAAATAATTGCTACAGGAGACAGCCAAAGTGCTCCACTTAAGCAAGGCGATTTAGCACTTCAAACTACCACAGGGACCGATGGCTTATATGTCGCAGGGCCTCTATATGATGATATAAGTTATACTGTTGAAGCTTCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGGTTACCATGTAAAGCAAGCTGGACCTCATTCCTTTTCTTGTCAGAAGCTGGGCCAAATTTCAGTGCGTATATATTCTAGAGAAGACGCCAACGAGCCTTTTCCATCAGTTCTCTTATCATTAAGTGGAGAAGATGGTTACAGGAACAATACAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439301" ref_strand="+" ref_description="SGN-E439301 [cSTA-11-L3]">
      <seq>taccgttggacattttggacagtgatggttctgttgttgatggtctatcggcaagacgtgtgccttacggagttgatcaatcgagtgcagccatctatgaattttccatgtgggctagtcctggaggaaaatttacttttgttcctcgagatgcacgggatgatggagggaaaaaaatattattttatcccacacagcagcatgttgccgtgatggaagatggctgccaatcttcaattcctccttttgctggtcgacttgggatgtatatagaaggatcagtttctccccctctcaatgatgttgttgtcaaaataattgctgcaggagacagccaaagtgctccacttaagcaaggcgatttagcacttgaaactaccacagggacagatggcttatatgtcgcagggcctctatatgatgatataagttatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9859" stop="12274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10159" g_stop="10315" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10316" i_stop="11614" i_length="1299">
            <donor d_prob="0.945" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11615" g_stop="11660" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="203" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11661" i_stop="11741" i_length="81">
            <donor d_prob="0.919" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11742" g_stop="11974" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="436" r_length="233" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E439301" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10159" e_stop="10315"/>
          <exon e_start="11615" e_stop="11660"/>
          <exon e_start="11742" e_stop="11974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCGTTGGACATTTTGGACAGTGAAGGTTCTGTTGTTGATGGTCTATTGGCAAGACGTGTGCCTTACGGAGTTGATCAATCGAGTGCAGCCATCTACGAATTTTCCATGTGGGCTAGTCCGGGAGGAAAATTTACTTTTATTCCTCGAGATGCACGGTGTGTGAATTATATTTTGATTTTATTCTTTTTATGCTTTCTGCCACTCGTTCTCTCTGTCTCATTATTCTTTTTATGCTCTTCTGCTACTCGTTCTCTCTCTGTCTCTCATTTTGGTCTTTCCTTCAAAACAAAAATACATAGATTGATAAGGAACTTTAAGGAATATGACCTTTTGCCTGTGATAGATGTTCATGTATTGATTGTTCTAGTGTGATTGTTTTTATTCCTTAAGGGAGAGAAAGTGTAACCTTTTGTTGTAATTCAATCTGCCTTTGTTTAGCTATATATCTATTTTATGGATTCTTTGTATCCGAGTCAAGTAACCTGCTTAGTTTGAATGAGTTGTATAGACAATAAAGCCTTCAGACGGACTTGACATGATAAAGAACCTTAATTTGCCTGATTCTACAACAACATACCCAGTGAAATCTCACAAAATGGTGTCTGAAGAGGGTAGTGTACGCAGACCTTACCATTACCTCATGGAGGTAAAGAGGCTGTTTCTGAAAGACCTTTGACTCAAGTGCATCCAACCCAAGTAAAAAAAGAAGAAAACAGTGGAAGAAAGGATAGCGGTTAATAAGAAAAGCAGTGTAAAGTCTACAAGAGAAAAACAACATCAAAATAGTGTGATAATCGAAATACACTAAACTACATATGTCAAGGACACAGGGATCAACTAGTCCTACAACAGGCACTAGGGCTACGTAAGGCAAGATAACACTCTACTCCTTCCTATCTATGGTCATGTCCTCGGTAATATGAAGGTTCACCATGTGTTGTCTAATCAGCTCTCCCCAATACATTTTCAGCCTACTCCAACCCCTCCGCATCCCCTACACGCACCTCCTCGCACATGTCCAAACCATCTGTCTTGCTTCCTTCATCTTGTCCACCACAGGGGCCATCTCACCTTCTCCCGGATAACCTCATACCTGATCTTGTGAGTCCTAGTGTGCCCACACATCCATCTCAACATCCTCATCTCTGCAACATGTATCTTCTCAACATCCTCCTCTGTACCTTCATCTGCCTGATTCTGACTTTCCAAAATATATGCTCACTTTTTTAGCTGTATTTTTCGAGCTTGTTTCATGCACTTTGTAGTGTGATGCACATGGTATTAGATGGCAGAATGTTTGTAATTCAAAGATTAGAGTAAATGTGTTTCCTGACATGCTCAAATGCTTTGAGACATTGCCTTGCACACAATCAAGAATAGATGTATTTTTAAATGCTACTTTGTTATAATTCCTCAGCTTTTCATGCATTTCTAATTGTTGTTTCATGTTTCAGGGATGATGGCGGGAAAAAAATATTATTTTATCCCACACAGCAGCATGTATGTGGAATTGAAAGTTTTAATCAAAGTAGTTTTTGTGTATCTACTCTTAGTTTTGAAGTCTTTCTTTGCTTTCTCTAGGTTGCTGTGATGGAAGATGGCTGCCAATCTTCAATTCCTCCTTTTGCTGGTCGACTTGGGATGTATATAGAAGGATCAGTTTCTCCCCCTCTCAATGATGTTGTTGTCAAAATAATTGCTACAGGAGACAGCCAAAGTGCTCCACTTAAGCAAGGCGATTTAGCACTTCAAACTACCACAGGGACCGATGGCTTATATGTCGCAGGGCCTCTATATGATGATATAAGTTATAC</genome_strand>
        <mrna_strand>TACCGTTGGACATTTTGGACAGTGATGGTTCTGTTGTTGATGGTCTATCGGCAAGACGTGTGCCTTACGGAGTTGATCAATCGAGTGCAGCCATCTATGAATTTTCCATGTGGGCTAGTCCTGGAGGAAAATTTACTTTTGTTCCTCGAGATGCACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATGGAGGGAAAAAAATATTATTTTATCCCACACAGCAGCAT.................................................................................GTTGCCGTGATGGAAGATGGCTGCCAATCTTCAATTCCTCCTTTTGCTGGTCGACTTGGGATGTATATAGAAGGATCAGTTTCTCCCCCTCTCAATGATGTTGTTGTCAAAATAATTGCTGCAGGAGACAGCCAAAGTGCTCCACTTAAGCAAGGCGATTTAGCACTTGAAACTACCACAGGGACAGATGGCTTATATGTCGCAGGGCCTCTATATGATGATATAAGTTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443015" ref_strand="+" ref_description="SGN-E443015 [cSTA-35-J22]">
      <seq>attttccatgtgggctagtcctggaggaaaatttacttttgttcctcgagatgcacgggatgatggagggaaaaaaatattattttatcccacacagcagcatgttgccgtgatggaagatggctgccaatcttcaattcctccttttgctggtcgacttgggatgtatatagaaggatcagtttctccccctctcaatgatgttgttgtcaaaataattgctgcaggagacagccaaagtgctccacttaagcaaggcgatttagcacttgaaactaccacagggacagatggcttatatgtcgcagggcctctatatgatgatataagttatactgttgaagcttcaaagacgggctaccatgtaaagcaagctggacctcattccttttcttgtcagaagctgggccaaatttcagtgcgtatatattctagagaagacaccaacgagccttttccgtcagttctcttatcattaagtggagaagatggttacaggaacaatacagtatcaggtgttggtgggattttcgtatttggcgactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9959" stop="12902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10259" g_stop="10315" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10316" i_stop="11614" i_length="1299">
            <donor d_prob="0.945" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11615" g_stop="11660" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="103" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11661" i_stop="11741" i_length="81">
            <donor d_prob="0.919" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11742" g_stop="11990" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="352" r_length="249" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11991" i_stop="12407" i_length="417">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12408" g_stop="12602" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="547" r_length="195" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E443015" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10259" e_stop="10315"/>
          <exon e_start="11615" e_stop="11660"/>
          <exon e_start="11742" e_stop="11990"/>
          <exon e_start="12408" e_stop="12602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCCATGTGGGCTAGTCCGGGAGGAAAATTTACTTTTATTCCTCGAGATGCACGGTGTGTGAATTATATTTTGATTTTATTCTTTTTATGCTTTCTGCCACTCGTTCTCTCTGTCTCATTATTCTTTTTATGCTCTTCTGCTACTCGTTCTCTCTCTGTCTCTCATTTTGGTCTTTCCTTCAAAACAAAAATACATAGATTGATAAGGAACTTTAAGGAATATGACCTTTTGCCTGTGATAGATGTTCATGTATTGATTGTTCTAGTGTGATTGTTTTTATTCCTTAAGGGAGAGAAAGTGTAACCTTTTGTTGTAATTCAATCTGCCTTTGTTTAGCTATATATCTATTTTATGGATTCTTTGTATCCGAGTCAAGTAACCTGCTTAGTTTGAATGAGTTGTATAGACAATAAAGCCTTCAGACGGACTTGACATGATAAAGAACCTTAATTTGCCTGATTCTACAACAACATACCCAGTGAAATCTCACAAAATGGTGTCTGAAGAGGGTAGTGTACGCAGACCTTACCATTACCTCATGGAGGTAAAGAGGCTGTTTCTGAAAGACCTTTGACTCAAGTGCATCCAACCCAAGTAAAAAAAGAAGAAAACAGTGGAAGAAAGGATAGCGGTTAATAAGAAAAGCAGTGTAAAGTCTACAAGAGAAAAACAACATCAAAATAGTGTGATAATCGAAATACACTAAACTACATATGTCAAGGACACAGGGATCAACTAGTCCTACAACAGGCACTAGGGCTACGTAAGGCAAGATAACACTCTACTCCTTCCTATCTATGGTCATGTCCTCGGTAATATGAAGGTTCACCATGTGTTGTCTAATCAGCTCTCCCCAATACATTTTCAGCCTACTCCAACCCCTCCGCATCCCCTACACGCACCTCCTCGCACATGTCCAAACCATCTGTCTTGCTTCCTTCATCTTGTCCACCACAGGGGCCATCTCACCTTCTCCCGGATAACCTCATACCTGATCTTGTGAGTCCTAGTGTGCCCACACATCCATCTCAACATCCTCATCTCTGCAACATGTATCTTCTCAACATCCTCCTCTGTACCTTCATCTGCCTGATTCTGACTTTCCAAAATATATGCTCACTTTTTTAGCTGTATTTTTCGAGCTTGTTTCATGCACTTTGTAGTGTGATGCACATGGTATTAGATGGCAGAATGTTTGTAATTCAAAGATTAGAGTAAATGTGTTTCCTGACATGCTCAAATGCTTTGAGACATTGCCTTGCACACAATCAAGAATAGATGTATTTTTAAATGCTACTTTGTTATAATTCCTCAGCTTTTCATGCATTTCTAATTGTTGTTTCATGTTTCAGGGATGATGGCGGGAAAAAAATATTATTTTATCCCACACAGCAGCATGTATGTGGAATTGAAAGTTTTAATCAAAGTAGTTTTTGTGTATCTACTCTTAGTTTTGAAGTCTTTCTTTGCTTTCTCTAGGTTGCTGTGATGGAAGATGGCTGCCAATCTTCAATTCCTCCTTTTGCTGGTCGACTTGGGATGTATATAGAAGGATCAGTTTCTCCCCCTCTCAATGATGTTGTTGTCAAAATAATTGCTACAGGAGACAGCCAAAGTGCTCCACTTAAGCAAGGCGATTTAGCACTTCAAACTACCACAGGGACCGATGGCTTATATGTCGCAGGGCCTCTATATGATGATATAAGTTATACTGTTGAAGCTTCAAAGGTTTGAACGATCTTAACATTATAATAACTGCCCGAGCATTTCTTGTTTCTCCATAATGCTTTGTTGAGCAGATCAATAGCATCTCCAGATTATTAACAGTCTCTACATCCCTTTTGAGTTACGTTATCATTTTTCAATGATATATGGTGCATTTGTACTAATGGTATGGATTTCTTCGTATATGTGCATTGCTGGCCAAATAAGACTAGAAGTATGAATCCGGTGGATTATCATGAGACTGCTAGCAAATTTGTTCTTTCTTGTTGCTATAGTTTTCCTTGATTGCATTCAATCGTATGTTATCAGCTGTTCTTATTGGAGCTTATTTGCTACTAGGGTTCTGTGGACTCGACTAAAGTATAAGCTTTCTTTTCTCTTTCTGGTGGATCTACCTAATATTTCTTTCTTTATTTGCAGCCGGGTTACCATGTAAAGCAAGCTGGACCTCATTCCTTTTCTTGTCAGAAGCTGGGCCAAATTTCAGTGCGTATATATTCTAGAGAAGACGCCAACGAGCCTTTTCCATCAGTTCTCTTATCATTAAGTGGAGAAGATGGTTACAGGAACAATACAGTATCAGGTGTTGGTGGGATTTTTGTATTTGGGGACTTA</genome_strand>
        <mrna_strand>ATTTTCCATGTGGGCTAGTCCTGGAGGAAAATTTACTTTTGTTCCTCGAGATGCACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATGGAGGGAAAAAAATATTATTTTATCCCACACAGCAGCAT.................................................................................GTTGCCGTGATGGAAGATGGCTGCCAATCTTCAATTCCTCCTTTTGCTGGTCGACTTGGGATGTATATAGAAGGATCAGTTTCTCCCCCTCTCAATGATGTTGTTGTCAAAATAATTGCTGCAGGAGACAGCCAAAGTGCTCCACTTAAGCAAGGCGATTTAGCACTTGAAACTACCACAGGGACAGATGGCTTATATGTCGCAGGGCCTCTATATGATGATATAAGTTATACTGTTGAAGCTTCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGCTACCATGTAAAGCAAGCTGGACCTCATTCCTTTTCTTGTCAGAAGCTGGGCCAAATTTCAGTGCGTATATATTCTAGAGAAGACACCAACGAGCCTTTTCCGTCAGTTCTCTTATCATTAAGTGGAGAAGATGGTTACAGGAACAATACAGTATCAGGTGTTGGTGGGATTTTCGTATTTGGCGACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209281" ref_strand="+" ref_description="SGN-E209281 [cLEC-53-D15]">
      <seq>tgtatatagaaggatcagtttctccccctctcaatgatgttgttgtcaaaataattgctacaggagacagccaaagtgctccacttaagcaaggcgatttagcacttcaaactaccacagggaccgatggcttatatgtcgcagggcctctatatgatgatataagttatactgttgaagcttcaaagccgggttaccatgtaaagcaagctggacctcattccttttcttgtcagaagctgggccaaatttcagtgcgtatatattctagagaagacgccaacgagccttttccatcagttctcttatcattaagtggagaagatggttacaggaacaatacagtatcaggtgttggtgggatttttgtatttggggacttatttccagggagtttctatctccgacccttgcttaaggaatatgctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11503" stop="12951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11803" g_stop="11990" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11991" i_stop="12407" i_length="417">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12408" g_stop="12638" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="419" r_length="231" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E209281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11803" e_stop="11990"/>
          <exon e_start="12408" e_stop="12638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATATAGAAGGATCAGTTTCTCCCCCTCTCAATGATGTTGTTGTCAAAATAATTGCTACAGGAGACAGCCAAAGTGCTCCACTTAAGCAAGGCGATTTAGCACTTCAAACTACCACAGGGACCGATGGCTTATATGTCGCAGGGCCTCTATATGATGATATAAGTTATACTGTTGAAGCTTCAAAGGTTTGAACGATCTTAACATTATAATAACTGCCCGAGCATTTCTTGTTTCTCCATAATGCTTTGTTGAGCAGATCAATAGCATCTCCAGATTATTAACAGTCTCTACATCCCTTTTGAGTTACGTTATCATTTTTCAATGATATATGGTGCATTTGTACTAATGGTATGGATTTCTTCGTATATGTGCATTGCTGGCCAAATAAGACTAGAAGTATGAATCCGGTGGATTATCATGAGACTGCTAGCAAATTTGTTCTTTCTTGTTGCTATAGTTTTCCTTGATTGCATTCAATCGTATGTTATCAGCTGTTCTTATTGGAGCTTATTTGCTACTAGGGTTCTGTGGACTCGACTAAAGTATAAGCTTTCTTTTCTCTTTCTGGTGGATCTACCTAATATTTCTTTCTTTATTTGCAGCCGGGTTACCATGTAAAGCAAGCTGGACCTCATTCCTTTTCTTGTCAGAAGCTGGGCCAAATTTCAGTGCGTATATATTCTAGAGAAGACGCCAACGAGCCTTTTCCATCAGTTCTCTTATCATTAAGTGGAGAAGATGGTTACAGGAACAATACAGTATCAGGTGTTGGTGGGATTTTTGTATTTGGGGACTTATTTCCAGGGAGTTTCTATCTCCGACCCTTGCTTAAG</genome_strand>
        <mrna_strand>TGTATATAGAAGGATCAGTTTCTCCCCCTCTCAATGATGTTGTTGTCAAAATAATTGCTACAGGAGACAGCCAAAGTGCTCCACTTAAGCAAGGCGATTTAGCACTTCAAACTACCACAGGGACCGATGGCTTATATGTCGCAGGGCCTCTATATGATGATATAAGTTATACTGTTGAAGCTTCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGGTTACCATGTAAAGCAAGCTGGACCTCATTCCTTTTCTTGTCAGAAGCTGGGCCAAATTTCAGTGCGTATATATTCTAGAGAAGACGCCAACGAGCCTTTTCCATCAGTTCTCTTATCATTAAGTGGAGAAGATGGTTACAGGAACAATACAGTATCAGGTGTTGGTGGGATTTTTGTATTTGGGGACTTATTTCCAGGGAGTTTCTATCTCCGACCCTTGCTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280229" ref_strand="-" ref_description="SGN-E280229 [cLEL-7-B18](-)">
      <seq>gcacgagcaatgatgttgttgtcaaaataattgctacaggagacagccaaagtgctccacttaagcaaggcgatttcccacttcaaactaccacagggaccgatggcttatatgtcgcagggcctctatatgatgatataagttatactgttgaagcttcaaagccgggttaccatgtaaagcaagctggacctcattccttttcttgtcagaagctgggccaaatttcagtgcgtatatattctagagaagacgccaacgagccttttccatcagttctcttatcattaagtggagaagatggttacaggaacaatacagtatcaagtgttggtgggatttttgtatttggggacttatttccagggagtttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11534" stop="12919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11827" g_stop="11990" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11991" i_stop="12407" i_length="417">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12408" g_stop="12619" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="376" r_length="212" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E280229" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280229" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11827" e_stop="11990"/>
          <exon e_start="12408" e_stop="12619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTCTCAATGATGTTGTTGTCAAAATAATTGCTACAGGAGACAGCCAAAGTGCTCCACTTAAGCAAGGCGATTTAGCACTTCAAACTACCACAGGGACCGATGGCTTATATGTCGCAGGGCCTCTATATGATGATATAAGTTATACTGTTGAAGCTTCAAAGGTTTGAACGATCTTAACATTATAATAACTGCCCGAGCATTTCTTGTTTCTCCATAATGCTTTGTTGAGCAGATCAATAGCATCTCCAGATTATTAACAGTCTCTACATCCCTTTTGAGTTACGTTATCATTTTTCAATGATATATGGTGCATTTGTACTAATGGTATGGATTTCTTCGTATATGTGCATTGCTGGCCAAATAAGACTAGAAGTATGAATCCGGTGGATTATCATGAGACTGCTAGCAAATTTGTTCTTTCTTGTTGCTATAGTTTTCCTTGATTGCATTCAATCGTATGTTATCAGCTGTTCTTATTGGAGCTTATTTGCTACTAGGGTTCTGTGGACTCGACTAAAGTATAAGCTTTCTTTTCTCTTTCTGGTGGATCTACCTAATATTTCTTTCTTTATTTGCAGCCGGGTTACCATGTAAAGCAAGCTGGACCTCATTCCTTTTCTTGTCAGAAGCTGGGCCAAATTTCAGTGCGTATATATTCTAGAGAAGACGCCAACGAGCCTTTTCCATCAGTTCTCTTATCATTAAGTGGAGAAGATGGTTACAGGAACAATACAGTATCAGGTGTTGGTGGGATTTTTGTATTTGGGGACTTATTTCCAGGGAGTTTCTA</genome_strand>
        <mrna_strand>GCACGAGCAATGATGTTGTTGTCAAAATAATTGCTACAGGAGACAGCCAAAGTGCTCCACTTAAGCAAGGCGATTTCCCACTTCAAACTACCACAGGGACCGATGGCTTATATGTCGCAGGGCCTCTATATGATGATATAAGTTATACTGTTGAAGCTTCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGGTTACCATGTAAAGCAAGCTGGACCTCATTCCTTTTCTTGTCAGAAGCTGGGCCAAATTTCAGTGCGTATATATTCTAGAGAAGACGCCAACGAGCCTTTTCCATCAGTTCTCTTATCATTAAGTGGAGAAGATGGTTACAGGAACAATACAGTATCAAGTGTTGGTGGGATTTTTGTATTTGGGGACTTATTTCCAGGGAGTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252673" ref_strand="+" ref_description="SGN-E252673 [cLEG-16-G19]">
      <seq>atgatgatataagttatactgttgaagcttcaaagccgggttaccatgtaaagcaagctggacctcattccttttcttgtcagaagctgggccaaatttcagtgcgtatatattctagagaagacgccaacgagccttttccatcagttctcttatcattaagtggagaagatggttacaggaacaatacagtatcaggtgttggtgggatttttgtatttggggacttatttccagggagtttctatctccgacccttgcttaaggaatatgctttctcccctccagcagaggcaatcgaacttggctctggagagtcaaaggaagtcgtctttcatgcaacgcgtgttgcatacagtgccatgggagtagttaaactcttgtctggtcagccaaaagaaggtgtttcagtagaagctcgatccgagtcaaaaggcttgtatgaggagacagtaacagattcaacaggattttaccgtttgaggggactcctacccgatactacttatgtgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11656" stop="16237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11956" g_stop="11990" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11991" i_stop="12407" i_length="417">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12408" g_stop="12638" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="266" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12639" i_stop="14219" i_length="1581">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14220" g_stop="14311" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="358" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14312" i_stop="15779" i_length="1468">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15780" g_stop="15937" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="516" r_length="158" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E252673" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11956" e_stop="11990"/>
          <exon e_start="12408" e_stop="12638"/>
          <exon e_start="14220" e_stop="14311"/>
          <exon e_start="15780" e_stop="15937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGATATAAGTTATACTGTTGAAGCTTCAAAGGTTTGAACGATCTTAACATTATAATAACTGCCCGAGCATTTCTTGTTTCTCCATAATGCTTTGTTGAGCAGATCAATAGCATCTCCAGATTATTAACAGTCTCTACATCCCTTTTGAGTTACGTTATCATTTTTCAATGATATATGGTGCATTTGTACTAATGGTATGGATTTCTTCGTATATGTGCATTGCTGGCCAAATAAGACTAGAAGTATGAATCCGGTGGATTATCATGAGACTGCTAGCAAATTTGTTCTTTCTTGTTGCTATAGTTTTCCTTGATTGCATTCAATCGTATGTTATCAGCTGTTCTTATTGGAGCTTATTTGCTACTAGGGTTCTGTGGACTCGACTAAAGTATAAGCTTTCTTTTCTCTTTCTGGTGGATCTACCTAATATTTCTTTCTTTATTTGCAGCCGGGTTACCATGTAAAGCAAGCTGGACCTCATTCCTTTTCTTGTCAGAAGCTGGGCCAAATTTCAGTGCGTATATATTCTAGAGAAGACGCCAACGAGCCTTTTCCATCAGTTCTCTTATCATTAAGTGGAGAAGATGGTTACAGGAACAATACAGTATCAGGTGTTGGTGGGATTTTTGTATTTGGGGACTTATTTCCAGGGAGTTTCTATCTCCGACCCTTGCTTAAGGTATTTATTGTTCCCTAATCTTAGGCTTTTATGACCATCTTGGGATATAGATGTTGGTTTATCTCTTATCTTGATAAGAATTTCTTGGGGACCTAGACAATGATATCAAGATAAGAGATCTGTACATTACGAAATTTGCTAGACCATTGAGCAGCAGCTGTTGCTTTACAGCCTATATGTAGTTCTTTCTATTACAAACCAATTTGCCTTTTATTTAATTTAATTATATGATACTGTGGACATATTATTGTCGAAGGGGAGCCTTGGCGTAACTGGTAAAGTTGCTGCTATGTGACCAGGAGGTCACAGGTTCGAGCTGTGAAAACTGCATCTTACAGAAATGCAGGAAGGCTGTGTACAATGTACCCTTGTGCTCCAGCCCTTCCCTGGACCTCTTGCATAGCGGGGGCTTAGTGTATAGGGCTACCCCTTTTTACCATGAACATATTATTGTCATTATGGAACAGTATCCTGTAGCACACTGTGAATTTGTATTGTAATCTTGAACATGATTATTTTTCGTAACTATCAAGAAACATGATATGTTTGATTGTTTTCAAAGAACCCTAATTTTGCTTTCCTTTGTGTTTTTTTTTGAAACTGACAATATTCTTCAGCATTGAGGATGTGCTGGCCATCATCATAAGAATTACAGATTCCCTATCAGATCTATAATTTATTCAGTATCCTCTATACATAATTGTTTACACCAAAAAAGTAGATATACAATACAATTCCATTTTACTGTGTGAATGGAATTGGGCCTATGACCAGTGTTATCAAAGGCGCGCTTTAAGCGCGCTTAAGCCCTGAAGCTATGCTCAAAACATGTTGAGCGCTTCGCCTCATGTGCGCTTCAGTGTCGTCATCAAGGTTTTAAGACAAACTTTCCTTGCCAATTGGCCTATTATAAAGAAGTGACACTAAACAATTGATATTTCACTTTATCACAAATATTTTTCATTTTCTTTGGTCATAAATGTGCCATTCATGTTTATAATTATAAGTCTTGGACTAAACATATATATTTGTATTTTTTTCTCCCTTTGCGCCTTTTTTCATTAAAGCCCACACTTTATTTGCGCTTAAAGCCCCCAAGGACCTTAGAGCTTTTTTGCGCTTTTCACCTTTGATAACACTGGGCCTATCTTTAAAACATCTGGCATTTCTCTCCTCTATACTGCCCACCATATATATGAAGGAATAAGTCTCCACCATATGTTCTAGTTCATTAACAATAGTTTCTGCTAAGTGCTAGAGAACAGATAAATTTAAGTGATCTGTACTAAATATATATGTTTACTGATCTGTTAACTCAGAGAACAACAGCTCAGTTGTTATGTACCTCTTAGGTAAAAATAATCGATTTGAAGTTAAATTTTTGTTATTCTTTTCATGGGTACAGATGTAACCCTAGTAAAATGCAAGCTACGTTAGATAGACGAGTCTTCTCATTCCCTTCCCATGAACCAGCGCAAGTGACGTGGGATTTGTTTGTGGATGCTTTCAATATTTTACAACATACATGTTACAATTATAATAGTTTCTCTAAAGAGGGAATGTTTGCTAATGTTTGCGTAGGAATATGCTTTCTCCCCTCCAGCAGAGGCAATCGAACTTGGCTCTGGAGAGTCAAAGGAAGTCGTCTTTCATGCAACGCGTGTTGCATACAGGTATATCTACACATAAATATATATAAGTGGAATGTGCTGATGCCCGTGAGTTGTGTGAGGTCTTTGATTATTAGAAACATGAGCACTCCAGTTCGGTGCTTTTATCCAATCAATTACCTTTAAACATGAAAACATTTTGCCCCCAGGGCTTTGGTCTAAGGGTTAGAGCTCAGTGCATGTGGGTTAGGTGCATGTTATGGATTTGAATTTTTTCACAGACGAATGCCTGGTATTTAAGTGGAGAAGGGTAGAGAAGCAAACGCATTGCCCATCGAGTTTTAAACCATGCGGCATTGGCCCTTGGGAATTCCTCAGTTGTAAAAAGAAAGTTCATAGCTTTTGTTAAAGAATAAATGACGGGGCATGCAATGACATGAGAAATATGTACTTTTTTTTCATTTAATGGTCTAGTGTATTTTGAACTCATCCAATTTACCGAATAAACACTAGGAAATATTTGCATTATACGTTAACGCTAATAGATGCTTTTCTTGACATTATAATACAGTAATATATATTAGTCCTTCATATCCTCTCTCTTCTTTTCTCAATTTGTCTATCCTTTATAATGTCCGTCGATGGAGTGACATGCTGGTGACCCAGCGAGGACATACGAAGAACTAACAAGAAAAAAACAACAAAAATAGAAATGGTGAAAGGTTTGGCAGGTATCATATTAGATATGGTGCCCTAACTTGTTAGTTGAGAATCGGTTGTCTGTTTATCCTTTTAAGTTGAACCTTAACTGTTGGTTGAATATATTGATAACCACTTAAACTTGCCTGAATTTATTTAGACAGTTTAAATTATGGTGTATTTCAATTGAGCACTTAAAGCACATGATAAATTGTCCCTATTAGATACTCCGGTTCACATTTTGATTTTTTTATGCATGTTTTCAAGCGCCCATTATGCCTACTTCAGTTATACACATCAACATCAATTGGAACTGGCCTGAACTTTTATGGCTTATTGACCCTATGCATATAATTAAATGATATGGTATATTTTGAGTGATTAACTTGGCATAATAGAGGCTTGAGAATATGCACAAAAGCTTTTCTACAAATTTGAGTCAAAAGTGTCCAATAGAAATACTTTGTCACGTGTTCTGGTGCTCAACTGAAACATGTTGTAGTTCAAATGTCTAAATGATATTTACTGGCAAGCTTAAGGGGCTATTGATGTATTCTGCCTTTGTTGTTAGTTATTTGATGAAGGGAATTTGTTTTAGGTACGCTTTGCTACTTCTCTAATTACCATATGACAAAATAAGCTCAAGACCTATGAGAACTCTTATGGAGTCTCTACAAGCAAGAAGAGAAATTTGAGTTCTTGCTGATATCAGTTCACATTTAATAACAATTTTCACTTAGGTGGATCGGCTAGGATTTGTTCATTATGACATGCCATTTGCAGCATCTTTACCAGTTCTTGTTGGACTCAGATGGTTTTAACTTCCTTACAGTGCCATGGGAGTAGTTAAACTCTTGTCTGGTCAGCCAAAAGAAGGTGTTTCAGTAGAAGCTCGATCCGAGTCAAAAGGCTTGTATGAGGAGACAGTAACAGATTCAACAGGATTTTACCGTTTGAGAGGACTCCTACCCGATACTACTTATGTGATTA</genome_strand>
        <mrna_strand>ATGATGATATAAGTTATACTGTTGAAGCTTCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGGTTACCATGTAAAGCAAGCTGGACCTCATTCCTTTTCTTGTCAGAAGCTGGGCCAAATTTCAGTGCGTATATATTCTAGAGAAGACGCCAACGAGCCTTTTCCATCAGTTCTCTTATCATTAAGTGGAGAAGATGGTTACAGGAACAATACAGTATCAGGTGTTGGTGGGATTTTTGTATTTGGGGACTTATTTCCAGGGAGTTTCTATCTCCGACCCTTGCTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATGCTTTCTCCCCTCCAGCAGAGGCAATCGAACTTGGCTCTGGAGAGTCAAAGGAAGTCGTCTTTCATGCAACGCGTGTTGCATACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATGGGAGTAGTTAAACTCTTGTCTGGTCAGCCAAAAGAAGGTGTTTCAGTAGAAGCTCGATCCGAGTCAAAAGGCTTGTATGAGGAGACAGTAACAGATTCAACAGGATTTTACCGTTTGAGGGGACTCCTACCCGATACTACTTATGTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267265" ref_strand="+" ref_description="SGN-E267265 [cLEI-4-B12]">
      <seq>ccgggttaccatgtaaagcaagctggacctcattccttttcttggcagaagcgtgggccaaatttcagtgcgtatatattctagagaagacgccaacgagccttttccatcagttctcttatcattaagtggagaagatggttacaggaacaatacagtatcaggtgttggtgggatttttgtatttggggacttatttccagggagtttctatctccgacccttgcttaaggaatatgctttctcccctccagcagaggcaatcgaacttggctctggagagtcaaaggaagtcgtctttcatgcaacgcgtgttgcatacagtgccatgggagtagttaaactcttgtctggtcagccaaaagaaggtgtttcagtagaagctcgatccgagtcaaaaggcttgtatgaggagacagtaacagattcaacaggattttaccgtttgaggggactcctacccgatactacttatgtgattaaagtagcaaggaaagttgcatctggtggagctatgattgagcgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12108" stop="16284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12408" g_stop="12638" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12639" i_stop="14219" i_length="1581">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14220" g_stop="14311" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="324" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14312" i_stop="15779" i_length="1468">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15780" g_stop="15984" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="529" r_length="205" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E267265" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12408" e_stop="12638"/>
          <exon e_start="14220" e_stop="14311"/>
          <exon e_start="15780" e_stop="15984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGGTTACCATGTAAAGCAAGCTGGACCTCATTCCTTTTCTTGTCAGAAGC-TGGGCCAAATTTCAGTGCGTATATATTCTAGAGAAGACGCCAACGAGCCTTTTCCATCAGTTCTCTTATCATTAAGTGGAGAAGATGGTTACAGGAACAATACAGTATCAGGTGTTGGTGGGATTTTTGTATTTGGGGACTTATTTCCAGGGAGTTTCTATCTCCGACCCTTGCTTAAGGTATTTATTGTTCCCTAATCTTAGGCTTTTATGACCATCTTGGGATATAGATGTTGGTTTATCTCTTATCTTGATAAGAATTTCTTGGGGACCTAGACAATGATATCAAGATAAGAGATCTGTACATTACGAAATTTGCTAGACCATTGAGCAGCAGCTGTTGCTTTACAGCCTATATGTAGTTCTTTCTATTACAAACCAATTTGCCTTTTATTTAATTTAATTATATGATACTGTGGACATATTATTGTCGAAGGGGAGCCTTGGCGTAACTGGTAAAGTTGCTGCTATGTGACCAGGAGGTCACAGGTTCGAGCTGTGAAAACTGCATCTTACAGAAATGCAGGAAGGCTGTGTACAATGTACCCTTGTGCTCCAGCCCTTCCCTGGACCTCTTGCATAGCGGGGGCTTAGTGTATAGGGCTACCCCTTTTTACCATGAACATATTATTGTCATTATGGAACAGTATCCTGTAGCACACTGTGAATTTGTATTGTAATCTTGAACATGATTATTTTTCGTAACTATCAAGAAACATGATATGTTTGATTGTTTTCAAAGAACCCTAATTTTGCTTTCCTTTGTGTTTTTTTTTGAAACTGACAATATTCTTCAGCATTGAGGATGTGCTGGCCATCATCATAAGAATTACAGATTCCCTATCAGATCTATAATTTATTCAGTATCCTCTATACATAATTGTTTACACCAAAAAAGTAGATATACAATACAATTCCATTTTACTGTGTGAATGGAATTGGGCCTATGACCAGTGTTATCAAAGGCGCGCTTTAAGCGCGCTTAAGCCCTGAAGCTATGCTCAAAACATGTTGAGCGCTTCGCCTCATGTGCGCTTCAGTGTCGTCATCAAGGTTTTAAGACAAACTTTCCTTGCCAATTGGCCTATTATAAAGAAGTGACACTAAACAATTGATATTTCACTTTATCACAAATATTTTTCATTTTCTTTGGTCATAAATGTGCCATTCATGTTTATAATTATAAGTCTTGGACTAAACATATATATTTGTATTTTTTTCTCCCTTTGCGCCTTTTTTCATTAAAGCCCACACTTTATTTGCGCTTAAAGCCCCCAAGGACCTTAGAGCTTTTTTGCGCTTTTCACCTTTGATAACACTGGGCCTATCTTTAAAACATCTGGCATTTCTCTCCTCTATACTGCCCACCATATATATGAAGGAATAAGTCTCCACCATATGTTCTAGTTCATTAACAATAGTTTCTGCTAAGTGCTAGAGAACAGATAAATTTAAGTGATCTGTACTAAATATATATGTTTACTGATCTGTTAACTCAGAGAACAACAGCTCAGTTGTTATGTACCTCTTAGGTAAAAATAATCGATTTGAAGTTAAATTTTTGTTATTCTTTTCATGGGTACAGATGTAACCCTAGTAAAATGCAAGCTACGTTAGATAGACGAGTCTTCTCATTCCCTTCCCATGAACCAGCGCAAGTGACGTGGGATTTGTTTGTGGATGCTTTCAATATTTTACAACATACATGTTACAATTATAATAGTTTCTCTAAAGAGGGAATGTTTGCTAATGTTTGCGTAGGAATATGCTTTCTCCCCTCCAGCAGAGGCAATCGAACTTGGCTCTGGAGAGTCAAAGGAAGTCGTCTTTCATGCAACGCGTGTTGCATACAGGTATATCTACACATAAATATATATAAGTGGAATGTGCTGATGCCCGTGAGTTGTGTGAGGTCTTTGATTATTAGAAACATGAGCACTCCAGTTCGGTGCTTTTATCCAATCAATTACCTTTAAACATGAAAACATTTTGCCCCCAGGGCTTTGGTCTAAGGGTTAGAGCTCAGTGCATGTGGGTTAGGTGCATGTTATGGATTTGAATTTTTTCACAGACGAATGCCTGGTATTTAAGTGGAGAAGGGTAGAGAAGCAAACGCATTGCCCATCGAGTTTTAAACCATGCGGCATTGGCCCTTGGGAATTCCTCAGTTGTAAAAAGAAAGTTCATAGCTTTTGTTAAAGAATAAATGACGGGGCATGCAATGACATGAGAAATATGTACTTTTTTTTCATTTAATGGTCTAGTGTATTTTGAACTCATCCAATTTACCGAATAAACACTAGGAAATATTTGCATTATACGTTAACGCTAATAGATGCTTTTCTTGACATTATAATACAGTAATATATATTAGTCCTTCATATCCTCTCTCTTCTTTTCTCAATTTGTCTATCCTTTATAATGTCCGTCGATGGAGTGACATGCTGGTGACCCAGCGAGGACATACGAAGAACTAACAAGAAAAAAACAACAAAAATAGAAATGGTGAAAGGTTTGGCAGGTATCATATTAGATATGGTGCCCTAACTTGTTAGTTGAGAATCGGTTGTCTGTTTATCCTTTTAAGTTGAACCTTAACTGTTGGTTGAATATATTGATAACCACTTAAACTTGCCTGAATTTATTTAGACAGTTTAAATTATGGTGTATTTCAATTGAGCACTTAAAGCACATGATAAATTGTCCCTATTAGATACTCCGGTTCACATTTTGATTTTTTTATGCATGTTTTCAAGCGCCCATTATGCCTACTTCAGTTATACACATCAACATCAATTGGAACTGGCCTGAACTTTTATGGCTTATTGACCCTATGCATATAATTAAATGATATGGTATATTTTGAGTGATTAACTTGGCATAATAGAGGCTTGAGAATATGCACAAAAGCTTTTCTACAAATTTGAGTCAAAAGTGTCCAATAGAAATACTTTGTCACGTGTTCTGGTGCTCAACTGAAACATGTTGTAGTTCAAATGTCTAAATGATATTTACTGGCAAGCTTAAGGGGCTATTGATGTATTCTGCCTTTGTTGTTAGTTATTTGATGAAGGGAATTTGTTTTAGGTACGCTTTGCTACTTCTCTAATTACCATATGACAAAATAAGCTCAAGACCTATGAGAACTCTTATGGAGTCTCTACAAGCAAGAAGAGAAATTTGAGTTCTTGCTGATATCAGTTCACATTTAATAACAATTTTCACTTAGGTGGATCGGCTAGGATTTGTTCATTATGACATGCCATTTGCAGCATCTTTACCAGTTCTTGTTGGACTCAGATGGTTTTAACTTCCTTACAGTGCCATGGGAGTAGTTAAACTCTTGTCTGGTCAGCCAAAAGAAGGTGTTTCAGTAGAAGCTCGATCCGAGTCAAAAGGCTTGTATGAGGAGACAGTAACAGATTCAACAGGATTTTACCGTTTGAGAGGACTCCTACCCGATACTACTTATGTGATTAAAGTAGCAAGGAAAGTTGCATCTGGTGGAGCTATGATTGAGCGTGCA</genome_strand>
        <mrna_strand>CCGGGTTACCATGTAAAGCAAGCTGGACCTCATTCCTTTTCTTGGCAGAAGCGTGGGCCAAATTTCAGTGCGTATATATTCTAGAGAAGACGCCAACGAGCCTTTTCCATCAGTTCTCTTATCATTAAGTGGAGAAGATGGTTACAGGAACAATACAGTATCAGGTGTTGGTGGGATTTTTGTATTTGGGGACTTATTTCCAGGGAGTTTCTATCTCCGACCCTTGCTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATGCTTTCTCCCCTCCAGCAGAGGCAATCGAACTTGGCTCTGGAGAGTCAAAGGAAGTCGTCTTTCATGCAACGCGTGTTGCATACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATGGGAGTAGTTAAACTCTTGTCTGGTCAGCCAAAAGAAGGTGTTTCAGTAGAAGCTCGATCCGAGTCAAAAGGCTTGTATGAGGAGACAGTAACAGATTCAACAGGATTTTACCGTTTGAGGGGACTCCTACCCGATACTACTTATGTGATTAAAGTAGCAAGGAAAGTTGCATCTGGTGGAGCTATGATTGAGCGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297517" ref_strand="+" ref_description="SGN-E297517 [cLET-28-F3]">
      <seq>tggctctggagagtcaaaggaagtcgtctttcatgcaacgcgtgttgcatacagtgccatgggagtagttaaactcttgtctggtcagccaaaagaaggtgtttcagtagaagctcgatccgagtcaaaaggcttgtatgaggagacagtaacagattcaacaggattttaccgtttgagaggactcctacccgatactacttatgtgattaaagtagcaaggaaagttgcatctggtggagctatgattgagcgtgcatctcctgagtttctgaccgttcaggtgaacgctgaggactctaggggattagattttgtagtatttgaacagccagagaggacaattataagtggccatgttgaagggcntnnaatcaaagagttcaactcacatctccatgtggagatcaagtctgctgctgattcgtcaaagattgagtacacctctccactttccctctcaaacttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13958" stop="17509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14258" g_stop="14311" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14312" i_stop="15779" i_length="1468">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15780" g_stop="16008" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="283" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16009" i_stop="17021" i_length="1013">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17022" g_stop="17209" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="471" r_length="188" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E297517" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14258" e_stop="14311"/>
          <exon e_start="15780" e_stop="16008"/>
          <exon e_start="17022" e_stop="17209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTCTGGAGAGTCAAAGGAAGTCGTCTTTCATGCAACGCGTGTTGCATACAGGTATATCTACACATAAATATATATAAGTGGAATGTGCTGATGCCCGTGAGTTGTGTGAGGTCTTTGATTATTAGAAACATGAGCACTCCAGTTCGGTGCTTTTATCCAATCAATTACCTTTAAACATGAAAACATTTTGCCCCCAGGGCTTTGGTCTAAGGGTTAGAGCTCAGTGCATGTGGGTTAGGTGCATGTTATGGATTTGAATTTTTTCACAGACGAATGCCTGGTATTTAAGTGGAGAAGGGTAGAGAAGCAAACGCATTGCCCATCGAGTTTTAAACCATGCGGCATTGGCCCTTGGGAATTCCTCAGTTGTAAAAAGAAAGTTCATAGCTTTTGTTAAAGAATAAATGACGGGGCATGCAATGACATGAGAAATATGTACTTTTTTTTCATTTAATGGTCTAGTGTATTTTGAACTCATCCAATTTACCGAATAAACACTAGGAAATATTTGCATTATACGTTAACGCTAATAGATGCTTTTCTTGACATTATAATACAGTAATATATATTAGTCCTTCATATCCTCTCTCTTCTTTTCTCAATTTGTCTATCCTTTATAATGTCCGTCGATGGAGTGACATGCTGGTGACCCAGCGAGGACATACGAAGAACTAACAAGAAAAAAACAACAAAAATAGAAATGGTGAAAGGTTTGGCAGGTATCATATTAGATATGGTGCCCTAACTTGTTAGTTGAGAATCGGTTGTCTGTTTATCCTTTTAAGTTGAACCTTAACTGTTGGTTGAATATATTGATAACCACTTAAACTTGCCTGAATTTATTTAGACAGTTTAAATTATGGTGTATTTCAATTGAGCACTTAAAGCACATGATAAATTGTCCCTATTAGATACTCCGGTTCACATTTTGATTTTTTTATGCATGTTTTCAAGCGCCCATTATGCCTACTTCAGTTATACACATCAACATCAATTGGAACTGGCCTGAACTTTTATGGCTTATTGACCCTATGCATATAATTAAATGATATGGTATATTTTGAGTGATTAACTTGGCATAATAGAGGCTTGAGAATATGCACAAAAGCTTTTCTACAAATTTGAGTCAAAAGTGTCCAATAGAAATACTTTGTCACGTGTTCTGGTGCTCAACTGAAACATGTTGTAGTTCAAATGTCTAAATGATATTTACTGGCAAGCTTAAGGGGCTATTGATGTATTCTGCCTTTGTTGTTAGTTATTTGATGAAGGGAATTTGTTTTAGGTACGCTTTGCTACTTCTCTAATTACCATATGACAAAATAAGCTCAAGACCTATGAGAACTCTTATGGAGTCTCTACAAGCAAGAAGAGAAATTTGAGTTCTTGCTGATATCAGTTCACATTTAATAACAATTTTCACTTAGGTGGATCGGCTAGGATTTGTTCATTATGACATGCCATTTGCAGCATCTTTACCAGTTCTTGTTGGACTCAGATGGTTTTAACTTCCTTACAGTGCCATGGGAGTAGTTAAACTCTTGTCTGGTCAGCCAAAAGAAGGTGTTTCAGTAGAAGCTCGATCCGAGTCAAAAGGCTTGTATGAGGAGACAGTAACAGATTCAACAGGATTTTACCGTTTGAGAGGACTCCTACCCGATACTACTTATGTGATTAAAGTAGCAAGGAAAGTTGCATCTGGTGGAGCTATGATTGAGCGTGCATCTCCTGAGTTTCTGACCGTTCAGGTTGGTACACTTCATGTTGCCATTTTTCCTTTAATGTTCATGAGTGAATAGGAATCATGAACTTGGTTATCCTTTCGAAATTGTTCTTGTGTTGATCTTTGAACTGAAAGGAATTTAAATCATATATATACATTCCGCAAAGGGCATGCTAGAGGAATCAGTTAGAAGTGTAAGAATAGTGGGGTAAATATGGAGTAGCAACTTTCCTTGCTTCTTTAAGCACAAACTGGACAATGCCAGAACACACAGCAGACCTGCTTAGTTGCTGGGTGAGGAGAGGGGGTAGTAAGAACCAGCAAAAATTGTGGAACATGATACCTTCTTGTATATGGTGGAGTATTTGGAGAGAAGAAATAAGAGGTGTCTTGAAAATACTGCAGAATCAATGCAAAAGCTTAAATGGCATTGTATGAAGACTTTTTTCTTTTTTTTTTTGCGTAAAGAAGAGGATATAGAGGATGCTCGACAGATTTTAAACTTTTTTTCTTCTTTATAAGTTTAGTCACCGCTTTCTTGATTTGTTTTTTTTTTGGATCTTTGATGTAAATCTTTTTGGTGGTTGCCAGCATACCGTATTGCTGAGGAATACAACTTTACCTTTATCAGAATAAAATAAAACATGGAGAATCTTATTATTGTTGGTTTGCACCAGGAATAGCTTTTTTTTAAAAAAAAAAAATTCACCCAGAATTGCTTGTACTTCTTTAGTCTTCTTAAAGATGAACTAACCAATATGAGGAAGCACTCCACTGAATGGGTTTTAGGATAAGTAGAAGTAAGAATATATACATTGCAACTTTTATTACACGCTTTTGCCAAGATTCTAGCTCTATGGACTTCTACATCATGTCTGTGTATGTCTAGATGTTCTGTGTGAGACAACAAAGTTCCTATTTTGTTTTAGTTATGGTTAAAATACGAGACATAGTTTGTAAATTTCATCGAATCTGTCCCTTTAAAGGCACAGTTGTTTGACATATGTTTTGCTTGTGCTAACTTCATATACCTTGCAGGTGAACGCTGAGGACTCTAGGGGATTAGATTTTGTAGTATTTGAACAGCCAGAGAGGACAATTATAAGTGGCCATGTTGAAGGGCATAAAATCAAAGAGTTCAACTCACATCTCCATGTGGAGATCAAGTCTGCTGCTGATCCGTCAAAGATTGAGTACAACTCTCCACTTCCCCTCTCAAACTTTTT</genome_strand>
        <mrna_strand>TGGCTCTGGAGAGTCAAAGGAAGTCGTCTTTCATGCAACGCGTGTTGCATACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATGGGAGTAGTTAAACTCTTGTCTGGTCAGCCAAAAGAAGGTGTTTCAGTAGAAGCTCGATCCGAGTCAAAAGGCTTGTATGAGGAGACAGTAACAGATTCAACAGGATTTTACCGTTTGAGAGGACTCCTACCCGATACTACTTATGTGATTAAAGTAGCAAGGAAAGTTGCATCTGGTGGAGCTATGATTGAGCGTGCATCTCCTGAGTTTCTGACCGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACGCTGAGGACTCTAGGGGATTAGATTTTGTAGTATTTGAACAGCCAGAGAGGACAATTATAAGTGGCCATGTTGAAGGGCNTNNAATCAAAGAGTTCAACTCACATCTCCATGTGGAGATCAAGTCTGCTGCTGATTCGTCAAAGATTGAGTACACCTCTCCACTTTCCCTCTCAAACTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415085" ref_strand="-" ref_description="SGN-E415085 [STM-20-P21]">
      <seq>atgtggagatcaagtctgctgctgatccgtcgaagattgagtacaacttcccacttcccctctcaaactttttccaggtgaaggacttgcgtaagggtaaattccttgtacagctcagatcatctgtgcgttcaagcactcacaaatgtgaatcagatgttattgaggttgatttagagaaaaaatctcaaattcatgtgggtccactcaagtacaagattgatttcaatcaccagaaacaggatttaactccagctcctgtgtaccctctgtttgttggagtttctgtgattgcgcttttcattggaatgccaagattgaaggatttatcccaagtcatgatgggaatgtcttcatcaaagaaagaagtgaaaagacctatagtgagaaagaaaacatactgaggaagggatctacttggaagtagtgatgcttaggtaggtggcatgatctataagagcagatgtagtttttatttgtccatcgattcaagcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16837" stop="18156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17137" g_stop="17378" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17379" i_stop="17475" i_length="97">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.911" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17476" g_stop="17549" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="316" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17550" i_stop="17649" i_length="100">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17650" g_stop="17856" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="498" r_length="182" r_score="0.831"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E415085" ref_strand="-">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.050" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415085" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17137" e_stop="17378"/>
          <exon e_start="17476" e_stop="17549"/>
          <exon e_start="17650" e_stop="17856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGGAGATCAAGTCTGCTGCTGATCCGTCAAAGATTGAGTACAACTCTCCACTTCCCCTCTCAAACTTTTTCCAGGTGAAGGACTTGCCTAAGGGTAAATACCTTGTACAGCTGAGATCATCTCTGCCTTCAAGGACTCACAAATTTGAATCAGATGTTATTGAGGTTGATTTAGAGAAAAATTCTCAAATTCATGTGGGTCCACTCAAGTACAAAATCGATTTCAATCACCAGAAACAGGTAATGTGTATCAACTATTGGACACTAATATTCTTTTTATTGTTTCTGTGATGATATTGATGTTGGTTTGCCCTTTCTGTCTCCCCTATGATTCCAGGATTTAACTCCAGCTCCTGTGTACCCTCTATTTGTTGGAGTTTCTGTGATTGCACTTTTCATTGGGATGCCAAGGTATCTGGGGAACTTTCTTTGATCTAATTCTTTATGTTTATCGTTTTAATGGACGTCCAAAGAAGTTAGTAAAATGTCTGTTTCGATTTCTTTGTTGCAGATTGAAGGATTTATACCAAGTGATGATGGGAATGTCTTCATCAGTAGTGTCAGCAAAGAAAGAAGTGAAAAGACCTCTAGTGAGAAAGAAAACATACTGAGGAATGGATCTACTTTTTAGAGGAGCTTCAATGCTTACTTAGGTAGGTGACATGAATGATCTATAAGAGCTGATGTAGTTTTTATTTGTCCATCGATTCAAGCAAAT</genome_strand>
        <mrna_strand>ATGTGGAGATCAAGTCTGCTGCTGATCCGTCGAAGATTGAGTACAACTTCCCACTTCCCCTCTCAAACTTTTTCCAGGTGAAGGACTTGCGTAAGGGTAAATTCCTTGTACAGCTCAGATCATCTGTGCGTTCAAGCACTCACAAATGTGAATCAGATGTTATTGAGGTTGATTTAGAGAAAAAATCTCAAATTCATGTGGGTCCACTCAAGTACAAGATTGATTTCAATCACCAGAAACAG.................................................................................................GATTTAACTCCAGCTCCTGTGTACCCTCTGTTTGTTGGAGTTTCTGTGATTGCGCTTTTCATTGGAATGCCAAG....................................................................................................ATTGAAGGATTTATCCCAAGTCATGATGGGAATGTC-T--TC---A---TCA---AAGAAAGAAGTGAAAAGACCTATAGTGAGAAAGAAAACATACTGAGGAAGGGATCTAC---TT-G-GAAG--T-AGTG-ATGCTTAGGTAGGTG----GCATGATCTATAAGAGCAGATGTAGTTTTTATTTGTCCATCGATTCAAGCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542826" ref_strand="+" ref_description="SGN-E542826 [TUS-64-F6]">
      <seq>gtaaataccttgtacagctgagatcatctctgccttcaaggactcacaaatttgaatcagatgttattgaggttgatttagagaaaaattctcaaattcatgtgggtccactcaagtacaaaatcgatttcaatcaccagaaacaggatttaactccagctcctgtgtaccctctatttgttggagtttctgtgattgcacttttcattgggatgccaagattgaaggatttataccaagtgatgatgggaatgtcttcatcagtagtgtcagcaaagaaagaagtgaaaagacctctagtgagaaagaaaacatactgaggaatggatctactttttagaggagcttcaatgcttacttaggtaggtgacatgaatgatctataagagctgatgtagtttttatttgtccatcgattcaagcaaatcttcactcacacaaggatctcctccctcgcctcacagcaaccctctactacgatactgaatcttcatttgttagtcgttagcgcttcaaattttgacaattttaacctcaatatatttattatacctatgccaatttttgggatggtttcagtaaattatgtttttgtgattccatccatatttagcttttgtaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16933" stop="18352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17233" g_stop="17378" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17379" i_stop="17475" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17476" g_stop="17549" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="220" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17550" i_stop="17649" i_length="100">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17650" g_stop="18052" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="623" r_length="403" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E542826" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17233" e_stop="17378"/>
          <exon e_start="17476" e_stop="17549"/>
          <exon e_start="17650" e_stop="18052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAATACCTTGTACAGCTGAGATCATCTCTGCCTTCAAGGACTCACAAATTTGAATCAGATGTTATTGAGGTTGATTTAGAGAAAAATTCTCAAATTCATGTGGGTCCACTCAAGTACAAAATCGATTTCAATCACCAGAAACAGGTAATGTGTATCAACTATTGGACACTAATATTCTTTTTATTGTTTCTGTGATGATATTGATGTTGGTTTGCCCTTTCTGTCTCCCCTATGATTCCAGGATTTAACTCCAGCTCCTGTGTACCCTCTATTTGTTGGAGTTTCTGTGATTGCACTTTTCATTGGGATGCCAAGGTATCTGGGGAACTTTCTTTGATCTAATTCTTTATGTTTATCGTTTTAATGGACGTCCAAAGAAGTTAGTAAAATGTCTGTTTCGATTTCTTTGTTGCAGATTGAAGGATTTATACCAAGTGATGATGGGAATGTCTTCATCAGTAGTGTCAGCAAAGAAAGAAGTGAAAAGACCTCTAGTGAGAAAGAAAACATACTGAGGAATGGATCTACTTTTTAGAGGAGCTTCAATGCTTACTTAGGTAGGTGACATGAATGATCTATAAGAGCTGATGTAGTTTTTATTTGTCCATCGATTCAAGCAAATCTTCACTCACACAAGGATCTCCTCCCTCGCCTCACAGCAACCCTCTACTACGATACTGAATCTTCATTTGTTAGTCGTTAGCGCTTCAAATTTTGACAATTTTAACCTCAATATATTTATTATACCTATGCCAATTTTTGGGATGGTTTCAGTAAATTATGTTTTTGTGATTCCATCCATATTTAGCTTTTGTAAC</genome_strand>
        <mrna_strand>GTAAATACCTTGTACAGCTGAGATCATCTCTGCCTTCAAGGACTCACAAATTTGAATCAGATGTTATTGAGGTTGATTTAGAGAAAAATTCTCAAATTCATGTGGGTCCACTCAAGTACAAAATCGATTTCAATCACCAGAAACAG.................................................................................................GATTTAACTCCAGCTCCTGTGTACCCTCTATTTGTTGGAGTTTCTGTGATTGCACTTTTCATTGGGATGCCAAG....................................................................................................ATTGAAGGATTTATACCAAGTGATGATGGGAATGTCTTCATCAGTAGTGTCAGCAAAGAAAGAAGTGAAAAGACCTCTAGTGAGAAAGAAAACATACTGAGGAATGGATCTACTTTTTAGAGGAGCTTCAATGCTTACTTAGGTAGGTGACATGAATGATCTATAAGAGCTGATGTAGTTTTTATTTGTCCATCGATTCAAGCAAATCTTCACTCACACAAGGATCTCCTCCCTCGCCTCACAGCAACCCTCTACTACGATACTGAATCTTCATTTGTTAGTCGTTAGCGCTTCAAATTTTGACAATTTTAACCTCAATATATTTATTATACCTATGCCAATTTTTGGGATGGTTTCAGTAAATTATGTTTTTGTGATTCCATCCATATTTAGCTTTTGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301776" ref_strand="+" ref_description="SGN-E301776 [cLEW-25-I19]">
      <seq>taaataccttgtacagctgagatcatctctgccttcaaggactcacaaatttgaatcagatgttattgaggttgatttagagaaaaattctcaaattcatgtgggtccactcaagtacaaaatcgatttcaatcaccagaaacaggatttaactccagctcctgtgtaccctctatttgttggagtttctgtgattgcacttttcattgggatgccaagattgaaggatttataccaagtgatgatgggaatgtcttcatcagtagtgtcagcaaagaaagaagtgaaaagacctctagtgagaaagaaaacatactgaggaatggatctactttttagaggagcttcaatgcttacttaggtaggtgacatgaatgatctataagagctgatgtagtttttatttgtccatcgattcaagcaaatcttcactcacacaaggatctcctccctcgcctcacagcaaccctctactacgatactgaatcttcatttgttagtcgttagcgcttcaaattttgacaattttaacctcaatatatttattatacctatgccaatttttgggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16934" stop="18301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17234" g_stop="17378" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17379" i_stop="17475" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17476" g_stop="17549" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="219" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17550" i_stop="17649" i_length="100">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17650" g_stop="18001" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="571" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E301776" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17234" e_stop="17378"/>
          <exon e_start="17476" e_stop="17549"/>
          <exon e_start="17650" e_stop="18001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATACCTTGTACAGCTGAGATCATCTCTGCCTTCAAGGACTCACAAATTTGAATCAGATGTTATTGAGGTTGATTTAGAGAAAAATTCTCAAATTCATGTGGGTCCACTCAAGTACAAAATCGATTTCAATCACCAGAAACAGGTAATGTGTATCAACTATTGGACACTAATATTCTTTTTATTGTTTCTGTGATGATATTGATGTTGGTTTGCCCTTTCTGTCTCCCCTATGATTCCAGGATTTAACTCCAGCTCCTGTGTACCCTCTATTTGTTGGAGTTTCTGTGATTGCACTTTTCATTGGGATGCCAAGGTATCTGGGGAACTTTCTTTGATCTAATTCTTTATGTTTATCGTTTTAATGGACGTCCAAAGAAGTTAGTAAAATGTCTGTTTCGATTTCTTTGTTGCAGATTGAAGGATTTATACCAAGTGATGATGGGAATGTCTTCATCAGTAGTGTCAGCAAAGAAAGAAGTGAAAAGACCTCTAGTGAGAAAGAAAACATACTGAGGAATGGATCTACTTTTTAGAGGAGCTTCAATGCTTACTTAGGTAGGTGACATGAATGATCTATAAGAGCTGATGTAGTTTTTATTTGTCCATCGATTCAAGCAAATCTTCACTCACACAAGGATCTCCTCCCTCGCCTCACAGCAACCCTCTACTACGATACTGAATCTTCATTTGTTAGTCGTTAGCGCTTCAAATTTTGACAATTTTAACCTCAATATATTTATTATACCTATGCCAATTTTTGGGATG</genome_strand>
        <mrna_strand>TAAATACCTTGTACAGCTGAGATCATCTCTGCCTTCAAGGACTCACAAATTTGAATCAGATGTTATTGAGGTTGATTTAGAGAAAAATTCTCAAATTCATGTGGGTCCACTCAAGTACAAAATCGATTTCAATCACCAGAAACAG.................................................................................................GATTTAACTCCAGCTCCTGTGTACCCTCTATTTGTTGGAGTTTCTGTGATTGCACTTTTCATTGGGATGCCAAG....................................................................................................ATTGAAGGATTTATACCAAGTGATGATGGGAATGTCTTCATCAGTAGTGTCAGCAAAGAAAGAAGTGAAAAGACCTCTAGTGAGAAAGAAAACATACTGAGGAATGGATCTACTTTTTAGAGGAGCTTCAATGCTTACTTAGGTAGGTGACATGAATGATCTATAAGAGCTGATGTAGTTTTTATTTGTCCATCGATTCAAGCAAATCTTCACTCACACAAGGATCTCCTCCCTCGCCTCACAGCAACCCTCTACTACGATACTGAATCTTCATTTGTTAGTCGTTAGCGCTTCAAATTTTGACAATTTTAACCTCAATATATTTATTATACCTATGCCAATTTTTGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210768" ref_strand="+" ref_description="SGN-E210768 [cLEC-68-E2]">
      <seq>cagaaaaattctcaaattcatgtgggtccactcaagtacaaaatcgatttcaatcaccacaaacaggatttaactccagctcctgtgtaccctctatttgttggagtttctgtgattgcacttttcattgggatgccaagattgaaggatttataccaagtgatgatgggaatgtcttcatcagtaatgtcagcaccagaaagaagtgaaaagacctctagtgagaaagaaaacatactgaggaatggatctactttttagaggagctccaatgcttacttaagaaggagacatgaatgatctataagagctgatgaagattttatttgtccatccatatcagcaaatcttcactcacacaaggatctcctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17014" stop="18181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17313" g_stop="17378" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17379" i_stop="17475" i_length="97">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17476" g_stop="17549" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="140" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17550" i_stop="17649" i_length="100">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17650" g_stop="17881" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="373" r_length="233" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E210768" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17313" e_stop="17378"/>
          <exon e_start="17476" e_stop="17549"/>
          <exon e_start="17650" e_stop="17881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAAATTCTCAAATTCATGTGGGTCCACTCAAGTACAAAATCGATTTCAATCACCAGAAACAGGTAATGTGTATCAACTATTGGACACTAATATTCTTTTTATTGTTTCTGTGATGATATTGATGTTGGTTTGCCCTTTCTGTCTCCCCTATGATTCCAGGATTTAACTCCAGCTCCTGTGTACCCTCTATTTGTTGGAGTTTCTGTGATTGCACTTTTCATTGGGATGCCAAGGTATCTGGGGAACTTTCTTTGATCTAATTCTTTATGTTTATCGTTTTAATGGACGTCCAAAGAAGTTAGTAAAATGTCTGTTTCGATTTCTTTGTTGCAGATTGAAGGATTTATACCAAGTGATGATGGGAATGTCTTCATCAGTAGTGTCAGCA-AAGAAAGAAGTGAAAAGACCTCTAGTGAGAAAGAAAACATACTGAGGAATGGATCTACTTTTTAGAGGAGCTTCAATGCTTACTTAGGTAGGTGACATGAATGATCTATAAGAGCTGATGTAGTTTTTATTTGTCCATCGATTCAAGCAAATCTTCACTCACACAAGGATCTCCTCC</genome_strand>
        <mrna_strand>CAGAAAAATTCTCAAATTCATGTGGGTCCACTCAAGTACAAAATCGATTTCAATCACCACAAACAG.................................................................................................GATTTAACTCCAGCTCCTGTGTACCCTCTATTTGTTGGAGTTTCTGTGATTGCACTTTTCATTGGGATGCCAAG....................................................................................................ATTGAAGGATTTATACCAAGTGATGATGGGAATGTCTTCATCAGTAATGTCAGCACCAGAAAGAAGTGAAAAGACCTCTAGTGAGAAAGAAAACATACTGAGGAATGGATCTACTTTTTAGAGGAGCTCCAATGCTTACTTAAGAAGGAGACATGAATGATCTATAAGAGCTGATGAAGATTTTATTTGTCCATCCATATCAGCAAATCTTCACTCACACAAGGATCTCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215549" ref_strand="+" ref_description="SGN-E215549 [cLEL-15-A6](-)">
      <seq>ctcctgtgtaccctctatttgttggagtttctgtgattgcacttttcattgggatgccaagattgaaggatttataccaagtgatgatgggaatgtcttcatcagtagtgtcagcaaagaaagaagtgaaaagacctctagtgagaaagaaaacatactgaggaatggatctactttttagaggagcttcaatgcttacttaggtaggtgacatgaatgatctataagagctgatgtagtttttatttgtccatcgattcaagcaaatcttcactcacacaaggatctcctccctcgcctcacagcaaccctctactacgatactgaatcttcatttgttagtcgttagcgcttcaaattttgacaattttaacctcaatatatttattatacctatgccaatttttgggatggtttcagtaaattatgtttttgtgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17189" stop="18326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17489" g_stop="17549" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17550" i_stop="17649" i_length="100">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17650" g_stop="18025" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="437" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="438" polyA_stop="456"/>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E215549" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17489" e_stop="17549"/>
          <exon e_start="17650" e_stop="18025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTGTGTACCCTCTATTTGTTGGAGTTTCTGTGATTGCACTTTTCATTGGGATGCCAAGGTATCTGGGGAACTTTCTTTGATCTAATTCTTTATGTTTATCGTTTTAATGGACGTCCAAAGAAGTTAGTAAAATGTCTGTTTCGATTTCTTTGTTGCAGATTGAAGGATTTATACCAAGTGATGATGGGAATGTCTTCATCAGTAGTGTCAGCAAAGAAAGAAGTGAAAAGACCTCTAGTGAGAAAGAAAACATACTGAGGAATGGATCTACTTTTTAGAGGAGCTTCAATGCTTACTTAGGTAGGTGACATGAATGATCTATAAGAGCTGATGTAGTTTTTATTTGTCCATCGATTCAAGCAAATCTTCACTCACACAAGGATCTCCTCCCTCGCCTCACAGCAACCCTCTACTACGATACTGAATCTTCATTTGTTAGTCGTTAGCGCTTCAAATTTTGACAATTTTAACCTCAATATATTTATTATACCTATGCCAATTTTTGGGATGGTTTCAGTAAATTATGTTTTTGTG</genome_strand>
        <mrna_strand>CTCCTGTGTACCCTCTATTTGTTGGAGTTTCTGTGATTGCACTTTTCATTGGGATGCCAAG....................................................................................................ATTGAAGGATTTATACCAAGTGATGATGGGAATGTCTTCATCAGTAGTGTCAGCAAAGAAAGAAGTGAAAAGACCTCTAGTGAGAAAGAAAACATACTGAGGAATGGATCTACTTTTTAGAGGAGCTTCAATGCTTACTTAGGTAGGTGACATGAATGATCTATAAGAGCTGATGTAGTTTTTATTTGTCCATCGATTCAAGCAAATCTTCACTCACACAAGGATCTCCTCCCTCGCCTCACAGCAACCCTCTACTACGATACTGAATCTTCATTTGTTAGTCGTTAGCGCTTCAAATTTTGACAATTTTAACCTCAATATATTTATTATACCTATGCCAATTTTTGGGATGGTTTCAGTAAATTATGTTTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744448" ref_strand="+" ref_description="SGN-E744448 [GI|399623]">
      <seq>ttaggtaggtgacatgaatgatctataagagctgtatgagtttttattgtccatcgattcaagcaaatctcactcacacaaggatctcctccctcgcctcacagcaaccctctactacgatactgaatcttcatttgttagtcgttagcgcttcaaattttgacaattttaacctcaatatatttattatacctatgccaatttttgggatggtttcagtaaattatgtttttgtgattccatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17488" stop="18334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17788" g_stop="18034" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E744448" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17788" e_stop="18034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTAGGTGACATGAATGATCTATAAGAGCTGATGTAGTTTTTATTTGTCCATCGATTCAAGCAAATCTTCACTCACACAAGGATCTCCTCCCTCGCCTCACAGCAACCCTCTACTACGATACTGAATCTTCATTTGTTAGTCGTTAGCGCTTCAAATTTTGACAATTTTAACCTCAATATATTTATTATACCTATGCCAATTTTTGGGATGGTTTCAGTAAATTATGTTTTTGTGATTCCATCC</genome_strand>
        <mrna_strand>TTAGGTAGGTGACATGAATGATCTATAAGAGCTGTATGAGTTTTTAT-TGTCCATCGATTCAAGCAAATC-TCACTCACACAAGGATCTCCTCCCTCGCCTCACAGCAACCCTCTACTACGATACTGAATCTTCATTTGTTAGTCGTTAGCGCTTCAAATTTTGACAATTTTAACCTCAATATATTTATTATACCTATGCCAATTTTTGGGATGGTTTCAGTAAATTATGTTTTTGTGATTCCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306792" ref_strand="+" ref_description="SGN-E306792 [cLEY-11-M3]">
      <seq>ttcaatcttctctcctaaaaccctatcctttctcttacaatcttcaatcaacaatggcctcctccactcccccaccccactgtgcactcactacctctaaaccttatcaaccccaaacccactcccatccccaccccaaccaccggaacaatcatcaacgccattggtcctctcaaaaagtctctctgaatccacctcgcaatcctaaccatccttcccaaacccctaattttctctctctatcttcatcaaaatcggatttttcagctgatttctcgggtagacggtcgacccgattcgtttccaagatgcattttggccgggctaagatatcgggtaacggaaggcactcttcatttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18268" stop="19229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18568" g_stop="18929" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E306792" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18568" e_stop="18929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCTTCTCTCCTAAAACCCTATCCTTTCTCTTACAATCTTCAATCAACAATGGCCTCCTCCACTCCCCCACCCCACTGTGCACTCACTACCTCTAAACCTTATCAACCCCAAACCCACTCCCATCCCCACCCCAACCACCGGAACAATCATCAACGCCATTGGTCCTCTCAAAAAGTCTCTCTGAATCCACCTCGCAATCCTAACCATCCTTCCCAAACCCCTAATTTTCTCTCTCTATCTTCATCAAAATCGGATTTTTCAGCTGATTTCTCGGGTAGACGGTCGACCCGATTCGTTTCCAAGATGCATTTTGGCCGGGCTAAGATATCGGGTAACGGAAGGCACTCTTCATTTGCT</genome_strand>
        <mrna_strand>TTCAATCTTCTCTCCTAAAACCCTATCCTTTCTCTTACAATCTTCAATCAACAATGGCCTCCTCCACTCCCCCACCCCACTGTGCACTCACTACCTCTAAACCTTATCAACCCCAAACCCACTCCCATCCCCACCCCAACCACCGGAACAATCATCAACGCCATTGGTCCTCTCAAAAAGTCTCTCTGAATCCACCTCGCAATCCTAACCATCCTTCCCAAACCCCTAATTTTCTCTCTCTATCTTCATCAAAATCGGATTTTTCAGCTGATTTCTCGGGTAGACGGTCGACCCGATTCGTTTCCAAGATGCATTTTGGCCGGGCTAAGATATCGGGTAACGGAAGGCACTCTTCATTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707815" ref_strand="+" ref_description="SGN-E707815 [FA34AC01]">
      <seq>cccttttagagtctttgagaccatgaaagattccggcttgaagcctaatttagtgacttataatgcgttgattgatgcttgtgggaaagggggtgctgattttaagagggcgtcggagatttttgacgaaatgctgagaaatggggttcaaccggataggattacctttaattcgttgcttgctgtttgtagtggtgcaggattgtgggagactgcgaggggtttgtttaacgagatgatttatagaggaattgatcaggatatatacacgtataatacatttttggatgtagcatgtaatgggggacagatagatgttgcttttgatattatgtctgagatgcatgcaaagaatattttgcccaaccaagtcacctacagtactgtgattcgtgggtgtgcaaaagctgggagattagacaaagcgttgagtttatttaatgagatgaagtgtgctggcataaaactagacagggtttcatacaatactttacttgctatatatgcaagcctgggaaaatttgaggaggcccttaatgttagcaaggagatggagggtatgggaattaagaaagatgttgtcacttacaatgctcttctggatgggtttggcaaacaaggaatgtataccaaggttaagcagttgtttgcagaaatgaaagctgaaaagctttcacctaacttattgacgtactccaccttgattagtgtgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18994" stop="20306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19292" g_stop="20006" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E707815" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19292" e_stop="20006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTATTAGAGTCTTTGAGACCATGAAAGATTCCGGCTTGAAGCCTAATTTAGTGACTTATAATGCGTTGATTGATGCTTGTGGGAAAGGGGGTGCTGATTTTAAGAGGGCGTCGGAGATTTTTGACGAAATGCTGAGAAATGGGGTTCAACCGGATAGGATTACCTTTAATTCGTTGCTTGCTGTTTGTAGTGGTGCAGGATTGTGGGAGACTGCGAGGGGTTTGTTTAACGAGATGATTTATAGAGGAATTGATCAGGATATATACACGTATAATACATTTTTGGATGTAGCATGTAATGGGGGACAGATAGATGTTGCTTTTGATATTATGTCTGAGATGCATGCAAAGAATATTTTGCCCAACCAAGTCACCTACAGTACTGTGATTCGTGGGTGTGCAAAAGCTGGGAGATTAGACAAAGCGTTGAGTTTATTTAATGAGATGAAGTGTGCTGGCATAAAACTAGACAGGGTTTCATACAATACTTTACTTGCTATATATGCAAGCCTGGGAAAATTTGAGGAGGCCCTTAATGTTAGCAAGGAGATGGAGGGTATGGGAATTAAGAAAGATGTTGTCACTTACAATGCTCTTCTGGATGGGTTTGGCAAACAAGGAATGTATACCAAGGTTAAGCAGTTGTTTGCAGAAATGAAAGCTGAAAAGCTTTCACCTAACTTATTGACGTACTCCACATTGATTAGTGTGTAC</genome_strand>
        <mrna_strand>CCCTTTTAGAGTCTTTGAGACCATGAAAGATTCCGGCTTGAAGCCTAATTTAGTGACTTATAATGCGTTGATTGATGCTTGTGGGAAAGGGGGTGCTGATTTTAAGAGGGCGTCGGAGATTTTTGACGAAATGCTGAGAAATGGGGTTCAACCGGATAGGATTACCTTTAATTCGTTGCTTGCTGTTTGTAGTGGTGCAGGATTGTGGGAGACTGCGAGGGGTTTGTTTAACGAGATGATTTATAGAGGAATTGATCAGGATATATACACGTATAATACATTTTTGGATGTAGCATGTAATGGGGGACAGATAGATGTTGCTTTTGATATTATGTCTGAGATGCATGCAAAGAATATTTTGCCCAACCAAGTCACCTACAGTACTGTGATTCGTGGGTGTGCAAAAGCTGGGAGATTAGACAAAGCGTTGAGTTTATTTAATGAGATGAAGTGTGCTGGCATAAAACTAGACAGGGTTTCATACAATACTTTACTTGCTATATATGCAAGCCTGGGAAAATTTGAGGAGGCCCTTAATGTTAGCAAGGAGATGGAGGGTATGGGAATTAAGAAAGATGTTGTCACTTACAATGCTCTTCTGGATGGGTTTGGCAAACAAGGAATGTATACCAAGGTTAAGCAGTTGTTTGCAGAAATGAAAGCTGAAAAGCTTTCACCTAACTTATTGACGTACTCCACCTTGATTAGTGTGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201213" ref_strand="+" ref_description="SGN-E201213 [cLEC-10-M23]">
      <seq>cggagatttttgacgaaatgctgagaaatggggttcaaccggataggattacctttaattcgttgcttgctgtttgtagtggtgcaggattgtgggagactgcgaggggtttgtttaacgagatgatttatagaggaattgatcaggatatatacacgtataatacatttttggatgtagcatgtaatgggggacagatagatgttgcttttgatattatgtctgagatgcatgcaaagaatattttgtccaaccaagtcacctacagtactgtgattcctgggtgtgcaaaagctgggagattagacagagcgttgagtttatttaatgagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19105" stop="20040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19405" g_stop="19740" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E201213" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19405" e_stop="19740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGATTTTTGACGAAATGCTGAGAAATGGGGTTCAACCGGATAGGATTACCTTTAATTCGTTGCTTGCTGTTTGTAGTGGTGCAGGATTGTGGGAGACTGCGAGGGGTTTGTTTAACGAGATGATTTATAGAGGAATTGATCAGGATATATACACGTATAATACATTTTTGGATGTAGCATGTAATGGGGGACAGATAGATGTTGCTTTTGATATTATGTCTGAGATGCATGCAAAGAATATTTTGCCCAACCAAGTCACCTACAGTACTGTGATTCGTGGGTGTGCAAAAGCTGGGAGATTAGACAAAGCGTTGAGTTTATTTAATGAGATGA</genome_strand>
        <mrna_strand>CGGAGATTTTTGACGAAATGCTGAGAAATGGGGTTCAACCGGATAGGATTACCTTTAATTCGTTGCTTGCTGTTTGTAGTGGTGCAGGATTGTGGGAGACTGCGAGGGGTTTGTTTAACGAGATGATTTATAGAGGAATTGATCAGGATATATACACGTATAATACATTTTTGGATGTAGCATGTAATGGGGGACAGATAGATGTTGCTTTTGATATTATGTCTGAGATGCATGCAAAGAATATTTTGTCCAACCAAGTCACCTACAGTACTGTGATTCCTGGGTGTGCAAAAGCTGGGAGATTAGACAGAGCGTTGAGTTTATTTAATGAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731050" ref_strand="+" ref_description="SGN-E731050 [LA26AA05]">
      <seq>cgctggcataaaactagacagggtttcatacaatactttacttgctatatatgcaagcctgggaaaatttgaggaggcccttaatgttagcaaggagatggagggtatgggaattaagaaagatgttgtcacttacaatgctcttctggatgggtttggcaaacaaggaatgtataccaaggttaagcagttgtttgcagaaatgaaagctgaaaagctttcacctaacttattgacgtactccacattgattagtgtgtacttgaaaggagccttgtatcatgatgcggtagaggtctataaggagttcaagaagcaaggtctgaaggcagatgttgttttttatagcaaacttattgatgccttgtgtaaaaaaggccttgtggagtattcgtcgttgttgcttaatgagatgacgaaggaagggatacaaccaaatgttgttacatataactctataatcaatgcttttggtgaatcggcaaacaatgaatgtggatcagacaatgtcacacatattgtatccgctatttctcaaagtaagtgggaaaacactgaagaggataatatcgttaagattttcgagcaattagctgctcaaaagtcagctagtgggaagaaaactaatgctgaaagacaggacatgctctgcattctaggttttccataagatgcatgaattacaaaataagcctaatgtagtcacgttttcagcaatcttgaatgcttgcagccgatgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19446" stop="20779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19745" g_stop="20479" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E731050" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19745" e_stop="20479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGGCATAAAACTAGACAGGGTTTCATACAATACTTTACTTGCTATATATGCAAGCCTGGGAAAATTTGAGGAGGCCCTTAATGTTAGCAAGGAGATGGAGGGTATGGGAATTAAGAAAGATGTTGTCACTTACAATGCTCTTCTGGATGGGTTTGGCAAACAAGGAATGTATACCAAGGTTAAGCAGTTGTTTGCAGAAATGAAAGCTGAAAAGCTTTCACCTAACTTATTGACGTACTCCACATTGATTAGTGTGTACTTGAAAGGAGCCTTGTATCATGATGCGGTAGAGGTCTATAAGGAGTTCAAGAAGCAAGGTCTGAAGGCAGATGTTGTTTTTTATAGCAAACTTATTGATGCCTTGTGTAAAAAAGGCCTTGTGGAGTATTCGTCGTTGTTGCTTAATGAGATGACGAAGGAAGGGATACAACCAAATGTTGTTACATATAACTCTATAATCAATGCTTTTGGTGAATCGGCAAACAATGAATGTGGATCAGACAATGTCACACATATTGTATCCGCTATTTCTCAAAGTAAGTGGGAAAACACTGAAGAGGATAATATCGTTAAGATTTTCGAGCAATTAGCTGCTCAAAAGTCAGCTAGTGGGAAGAAAACTAATGCTGAAAGACAGGACATGCTCTGCATTCTAGGTGTTTTCCATAAGATGCATGAATTACAAATAAAGCCTAATGTAGTCACGTTTTCAGCAATCTTGAATGCTTGCAG</genome_strand>
        <mrna_strand>CGCTGGCATAAAACTAGACAGGGTTTCATACAATACTTTACTTGCTATATATGCAAGCCTGGGAAAATTTGAGGAGGCCCTTAATGTTAGCAAGGAGATGGAGGGTATGGGAATTAAGAAAGATGTTGTCACTTACAATGCTCTTCTGGATGGGTTTGGCAAACAAGGAATGTATACCAAGGTTAAGCAGTTGTTTGCAGAAATGAAAGCTGAAAAGCTTTCACCTAACTTATTGACGTACTCCACATTGATTAGTGTGTACTTGAAAGGAGCCTTGTATCATGATGCGGTAGAGGTCTATAAGGAGTTCAAGAAGCAAGGTCTGAAGGCAGATGTTGTTTTTTATAGCAAACTTATTGATGCCTTGTGTAAAAAAGGCCTTGTGGAGTATTCGTCGTTGTTGCTTAATGAGATGACGAAGGAAGGGATACAACCAAATGTTGTTACATATAACTCTATAATCAATGCTTTTGGTGAATCGGCAAACAATGAATGTGGATCAGACAATGTCACACATATTGTATCCGCTATTTCTCAAAGTAAGTGGGAAAACACTGAAGAGGATAATATCGTTAAGATTTTCGAGCAATTAGCTGCTCAAAAGTCAGCTAGTGGGAAGAAAACTAATGCTGAAAGACAGGACATGCTCTGCATTCTA-G-GTTTTCCATAAGATGCATGAATTACAAAATAAGCCTAATGTAGTCACGTTTTCAGCAATCTTGAATGCTTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731947" ref_strand="+" ref_description="SGN-E731947 [LA28CF03]">
      <seq>gctggcataaaactagacagggtttcatacaatactttacttgctatatatgcaagcctgggaaaatttgaggaggcccttaatgttagcaaggagatggagggtatgggaattaagaaagatgttgtcacttacaatgctcttctggatgggtttggcaaacaaggaatgtataccaaggttaagcagttgtttgcagaaatgaaagctgaaaagctttcacctaacttattgacgtactccacattgattagtgtgtacttgaaaggagccttgtatcatgatgcggtagaggtctataaggagttcaagaagcaaggtctgaaggcagatgttgttttttatagcaaacttattgatgccttgtgtaaaaaaggccttgtggagtattcgtcgttgttgcttaatgagatgacgaaggaagggatacaaccaaatgttgttacatataactctataatcaatgcttttggtgaatcggcaaacaatgaatgtggatcagacaatgtcacacatattgtatccgctatttctcaaagtaagtgggaaaacactgaagaggataatatcgttaagattttcgagcaattagctgctcaaaagtcagctagtgggaagaaaactaatgctgaaagacaggacatgctctgcattctaggttttccataagatgcatgaattacaaataaagcctaatgtagtcacgttttcagcaatcttgaatgcttgcagccgatgcagttcatttgatgaagcttcactcttactcgaagaactccgtctatttgataacaagtttatggggtggcacatggacttctcatggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19446" stop="22309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19746" g_stop="20479" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20480" i_stop="21911" i_length="1432">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21912" g_stop="22009" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="829" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E731947" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19746" e_stop="20479"/>
          <exon e_start="21912" e_stop="22009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGCATAAAACTAGACAGGGTTTCATACAATACTTTACTTGCTATATATGCAAGCCTGGGAAAATTTGAGGAGGCCCTTAATGTTAGCAAGGAGATGGAGGGTATGGGAATTAAGAAAGATGTTGTCACTTACAATGCTCTTCTGGATGGGTTTGGCAAACAAGGAATGTATACCAAGGTTAAGCAGTTGTTTGCAGAAATGAAAGCTGAAAAGCTTTCACCTAACTTATTGACGTACTCCACATTGATTAGTGTGTACTTGAAAGGAGCCTTGTATCATGATGCGGTAGAGGTCTATAAGGAGTTCAAGAAGCAAGGTCTGAAGGCAGATGTTGTTTTTTATAGCAAACTTATTGATGCCTTGTGTAAAAAAGGCCTTGTGGAGTATTCGTCGTTGTTGCTTAATGAGATGACGAAGGAAGGGATACAACCAAATGTTGTTACATATAACTCTATAATCAATGCTTTTGGTGAATCGGCAAACAATGAATGTGGATCAGACAATGTCACACATATTGTATCCGCTATTTCTCAAAGTAAGTGGGAAAACACTGAAGAGGATAATATCGTTAAGATTTTCGAGCAATTAGCTGCTCAAAAGTCAGCTAGTGGGAAGAAAACTAATGCTGAAAGACAGGACATGCTCTGCATTCTAGGTGTTTTCCATAAGATGCATGAATTACAAATAAAGCCTAATGTAGTCACGTTTTCAGCAATCTTGAATGCTTGCAGGTATAATTTTCTTTACTACTAGTTCCATGCTTTACATTGAACTGTGTTTTCTTAATGTGTCATCTTTTCATTATGTGAGGGTTAGTATGATCTATTTCAACTTTAAGAAGGCAGTTTGGCGGTTATATTTTTTGGGTGGTAGTTATGTTCATTTTCTTTGTAGTTTGAAGACGCATTTGATCATGGACATGAAATTAGTGCTACTGATTTTGTTTGTGGATAGGAATGCACATGCGCCAGTCTGACTTTCTGTCATTGTCTTGAATGCTGATGTATGTGTGCTATCTATATTCAATATGCTTCTTGTTTTCTGGTGAAATGCAGCTACAGACTTTTAAGATTGTTGTATATATGAAAACAATAAAGCAGAACTAACTTTTTGTAAGCCTTGGTGGGCGGAGTTATCCGTTACTTGCGCTAGTGGAAAGTAATTGGTTCCCTGTGGAATATTCAAGATGCGCACAAGGTGGTTGGACACCACTGTTGTTTAAAAATAAATAAAGCAGAAGAAACTTCTGAGTTTTCCACTGAGACAGATACTCTTTTCACTCTAATGAATGAAACTTTATTTTAAGCTTGGGTTATTCAAATGTGTGTAGTAGAGCTCCATAGACAATAGATCATATGACCTTGCTTAGAGTTCACAAGAGAGGCGGGGAGATAGAGGCGAGAGAGAGAGAGAGTGTTTTGGCCTTGAAGACTACTTACTATAGTTTCTTTTATTGTCTGAAGTGCTTTGAGGACTTCAGCAGCAGGTTGTGGGAGTAGTTTAAGTTGTCAATAAAGTGGACCCATTGCCACATTAAGAACACCCAATCTAAGGAGTTTTTTTTTTCCACTTCTAAATTACTTTGGATCAAGGGTGTTTGATAAGAAAAATATTTTTCCAGAAAATAAGTCATTTTTTTGGTCACCAAACACCAGGACATATGTTCCATTACAAGGGGGAAAATGACTATCTTTGCTTATTTTTTTCTCAATAGACTGTTTGAAATAGTTTTTGAATCTTAGAGATTGTTGGATAGTGAGAGAGTTTCTTTCATTTTCCAGAAAATATTTACCGGGAAATAATGTCCTTCCTACCAAACACACCCCAAATATTTTCTTCAAAGTGGGTAACACGAATCTGGAGAATGAGCAAAGAATTGTGTTGTATCAAAAGAAATATATTGTCAATTTGGCACAAATTTCCTTAGTAGAATTAGAAGTGGGTGAGAGTGCGAAAGAGGACAAATAAGATATGATTTTTTGGTGAGTAGCATTTTGTTTTTTCTTGATTAACCTTTTGAAGGAGTGCTCGGAAGAATTGCTACTTAAGACATTTAACATCTTTGTGAAATCCCAATGCACTTGATTGGTTCAAATGTTATGATTAAACTGAATGGATTTGACTATTTGAGTAGATATGATGTGTGATTAAATATAATTGCAGCCGATGCAGTTCATTTGATGAAGCTTCACTCTTACTCGAAGAACTCCGTCTATTTGATAACCAAGTTTATGGGGTGGCACATGGACTTCTCATGGGGC</genome_strand>
        <mrna_strand>GCTGGCATAAAACTAGACAGGGTTTCATACAATACTTTACTTGCTATATATGCAAGCCTGGGAAAATTTGAGGAGGCCCTTAATGTTAGCAAGGAGATGGAGGGTATGGGAATTAAGAAAGATGTTGTCACTTACAATGCTCTTCTGGATGGGTTTGGCAAACAAGGAATGTATACCAAGGTTAAGCAGTTGTTTGCAGAAATGAAAGCTGAAAAGCTTTCACCTAACTTATTGACGTACTCCACATTGATTAGTGTGTACTTGAAAGGAGCCTTGTATCATGATGCGGTAGAGGTCTATAAGGAGTTCAAGAAGCAAGGTCTGAAGGCAGATGTTGTTTTTTATAGCAAACTTATTGATGCCTTGTGTAAAAAAGGCCTTGTGGAGTATTCGTCGTTGTTGCTTAATGAGATGACGAAGGAAGGGATACAACCAAATGTTGTTACATATAACTCTATAATCAATGCTTTTGGTGAATCGGCAAACAATGAATGTGGATCAGACAATGTCACACATATTGTATCCGCTATTTCTCAAAGTAAGTGGGAAAACACTGAAGAGGATAATATCGTTAAGATTTTCGAGCAATTAGCTGCTCAAAAGTCAGCTAGTGGGAAGAAAACTAATGCTGAAAGACAGGACATGCTCTGCATTCTA-G-GTTTTCCATAAGATGCATGAATTACAAATAAAGCCTAATGTAGTCACGTTTTCAGCAATCTTGAATGCTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATGCAGTTCATTTGATGAAGCTTCACTCTTACTCGAAGAACTCCGTCTATTTGATAA-CAAGTTTATGGGGTGGCACATGGACTTCTCATGGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704313" ref_strand="+" ref_description="SGN-E704313 [FA23DG09]">
      <seq>aaggagttcaagaagcaaggtctgaaggcagatgttgttttttatagcaaacttattgatgccttgtgtaaaaaaggccttgtggagtattcgtcgttgttgcttaatgagatgacgaaggaagggatacaaccaaatgttgttacatataactctataatcaatgcttttggtgaatcggcaaacaatgaatgtggatcagacaatgtcacacatattgtatccgctatttctcaaagtaagtgggaaaacactgaagaggataatatcgttaagattttcgagcaattagctgctcaaaagtcagctagtgggaagaaaactaatgctgaaagacaggacatgctctgcattctaggtgttttccataagatgcatgaattacaaataaagcctaatgtagtcacgttttcagcaatcttgaatgcttgcagccgatgcagttcatttgatgaagcttcactcttactcgaagaactccgtctatttgataaccaagtttatggggtggcacatggacttctcatggggcagagggaaggtgtatggtcacaagctctatctcttttcaatgaagtgaagcagatggactcttcaactgcatctgccttttacaatgctttgactgacatgctgtggcattttgaccagaaacaaggtgctcaattggttgtacttgaaggaaaaacgttcagaagtgtgggaaaatacatggtccacttcttgtttggatctgcatttgatgtcttcaggggctgcatgtgcaatggtccacgcatggttgcttagtatacggtctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19746" stop="23534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20046" g_stop="20479" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20480" i_stop="21911" i_length="1432">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21912" g_stop="22128" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="651" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22129" i_stop="23085" i_length="957">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23086" g_stop="23234" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="801" r_length="150" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E704313" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20046" e_stop="20479"/>
          <exon e_start="21912" e_stop="22128"/>
          <exon e_start="23086" e_stop="23234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAGTTCAAGAAGCAAGGTCTGAAGGCAGATGTTGTTTTTTATAGCAAACTTATTGATGCCTTGTGTAAAAAAGGCCTTGTGGAGTATTCGTCGTTGTTGCTTAATGAGATGACGAAGGAAGGGATACAACCAAATGTTGTTACATATAACTCTATAATCAATGCTTTTGGTGAATCGGCAAACAATGAATGTGGATCAGACAATGTCACACATATTGTATCCGCTATTTCTCAAAGTAAGTGGGAAAACACTGAAGAGGATAATATCGTTAAGATTTTCGAGCAATTAGCTGCTCAAAAGTCAGCTAGTGGGAAGAAAACTAATGCTGAAAGACAGGACATGCTCTGCATTCTAGGTGTTTTCCATAAGATGCATGAATTACAAATAAAGCCTAATGTAGTCACGTTTTCAGCAATCTTGAATGCTTGCAGGTATAATTTTCTTTACTACTAGTTCCATGCTTTACATTGAACTGTGTTTTCTTAATGTGTCATCTTTTCATTATGTGAGGGTTAGTATGATCTATTTCAACTTTAAGAAGGCAGTTTGGCGGTTATATTTTTTGGGTGGTAGTTATGTTCATTTTCTTTGTAGTTTGAAGACGCATTTGATCATGGACATGAAATTAGTGCTACTGATTTTGTTTGTGGATAGGAATGCACATGCGCCAGTCTGACTTTCTGTCATTGTCTTGAATGCTGATGTATGTGTGCTATCTATATTCAATATGCTTCTTGTTTTCTGGTGAAATGCAGCTACAGACTTTTAAGATTGTTGTATATATGAAAACAATAAAGCAGAACTAACTTTTTGTAAGCCTTGGTGGGCGGAGTTATCCGTTACTTGCGCTAGTGGAAAGTAATTGGTTCCCTGTGGAATATTCAAGATGCGCACAAGGTGGTTGGACACCACTGTTGTTTAAAAATAAATAAAGCAGAAGAAACTTCTGAGTTTTCCACTGAGACAGATACTCTTTTCACTCTAATGAATGAAACTTTATTTTAAGCTTGGGTTATTCAAATGTGTGTAGTAGAGCTCCATAGACAATAGATCATATGACCTTGCTTAGAGTTCACAAGAGAGGCGGGGAGATAGAGGCGAGAGAGAGAGAGAGTGTTTTGGCCTTGAAGACTACTTACTATAGTTTCTTTTATTGTCTGAAGTGCTTTGAGGACTTCAGCAGCAGGTTGTGGGAGTAGTTTAAGTTGTCAATAAAGTGGACCCATTGCCACATTAAGAACACCCAATCTAAGGAGTTTTTTTTTTCCACTTCTAAATTACTTTGGATCAAGGGTGTTTGATAAGAAAAATATTTTTCCAGAAAATAAGTCATTTTTTTGGTCACCAAACACCAGGACATATGTTCCATTACAAGGGGGAAAATGACTATCTTTGCTTATTTTTTTCTCAATAGACTGTTTGAAATAGTTTTTGAATCTTAGAGATTGTTGGATAGTGAGAGAGTTTCTTTCATTTTCCAGAAAATATTTACCGGGAAATAATGTCCTTCCTACCAAACACACCCCAAATATTTTCTTCAAAGTGGGTAACACGAATCTGGAGAATGAGCAAAGAATTGTGTTGTATCAAAAGAAATATATTGTCAATTTGGCACAAATTTCCTTAGTAGAATTAGAAGTGGGTGAGAGTGCGAAAGAGGACAAATAAGATATGATTTTTTGGTGAGTAGCATTTTGTTTTTTCTTGATTAACCTTTTGAAGGAGTGCTCGGAAGAATTGCTACTTAAGACATTTAACATCTTTGTGAAATCCCAATGCACTTGATTGGTTCAAATGTTATGATTAAACTGAATGGATTTGACTATTTGAGTAGATATGATGTGTGATTAAATATAATTGCAGCCGATGCAGTTCATTTGATGAAGCTTCACTCTTACTCGAAGAACTCCGTCTATTTGATAACCAAGTTTATGGGGTGGCACATGGACTTCTCATGGGGCAGAGGGAAGGTGTATGGTCACAAGCTCTATCTCTTTTCAATGAAGTGAAGCAGATGGACTCTTCAACTGCATCTGCCTTTTACAATGCTTTGACTGACATGCTGTGGCATTTTGACCAGGTAAAACTGCAGTTACATAACAACTATCAAAGAGAAGAAACGTATAGTGAATTTCTTCATTTTTTTTAGTTCTGATAAAGAGTGAAATTTCTCTTCATAGATGATGAGATTGTGATTATCAGTTTGTGGTGTATAGCTCTAGATATTTGCTTCAGTAGGCACCACCATCCTTTTTTAATGGGGAGAGGGCTTGGAACAATTCTATGTCATCCTCCAAATGTTCATTAGTTAGAATGTTTTATTACTATGGAATGCTTCAAGGAGCATGATTGAGGGCTAAAGAAAATTCTATTAGAGACTAATTTTATGTGAATCGTTTTTTCCACACCCAGAGATGTATTTTCATTAAGAAAAAACAGTTGAAATAATATAGAAAGCATAGACAGAGATGATATCATATCTAACAAGTCATGACTATATAGAATCATCTCGTTCATGGCTGTGAAGGCATAATCTCCAAAGTGGTACTTGTGATCTTCTTCCGTCACGATCTTGGATCTCCTCACCTTTCTTGCTCACTCCCTTAAGCTGACCTACCTGGCCTTATTGCATAGTTCAGCACTGGTGTCAAGGAAACCAAAATCTTCGCTCTGATCATTGTTAACTGACTAATATCACCTTTGCATTGCCATAAATTACCACTGACTCATGTTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCGGAAGTGCTCAATTGGTTGTTAACTGACTAATATCACCTTTGCATTGCCATAAATTACCACTGACTCATATTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCGGAAGTGCTCAATTGGTTGTTAACTGACTAATATCACCTTTGCATTGCCATAAATTACTACTGACTCATATTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGG-AAAACGTTCAGAAGTGTGGGAAAATACATGGTCCACTTCTTGTTTGGATCTGCATTTGATGTCTTCAGGGGCTGCATGTGCAATGGTCCACGCATGGTTGCTTAGTATACGGTCTAT</genome_strand>
        <mrna_strand>AAGGAGTTCAAGAAGCAAGGTCTGAAGGCAGATGTTGTTTTTTATAGCAAACTTATTGATGCCTTGTGTAAAAAAGGCCTTGTGGAGTATTCGTCGTTGTTGCTTAATGAGATGACGAAGGAAGGGATACAACCAAATGTTGTTACATATAACTCTATAATCAATGCTTTTGGTGAATCGGCAAACAATGAATGTGGATCAGACAATGTCACACATATTGTATCCGCTATTTCTCAAAGTAAGTGGGAAAACACTGAAGAGGATAATATCGTTAAGATTTTCGAGCAATTAGCTGCTCAAAAGTCAGCTAGTGGGAAGAAAACTAATGCTGAAAGACAGGACATGCTCTGCATTCTAGGTGTTTTCCATAAGATGCATGAATTACAAATAAAGCCTAATGTAGTCACGTTTTCAGCAATCTTGAATGCTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATGCAGTTCATTTGATGAAGCTTCACTCTTACTCGAAGAACTCCGTCTATTTGATAACCAAGTTTATGGGGTGGCACATGGACTTCTCATGGGGCAGAGGGAAGGTGTATGGTCACAAGCTCTATCTCTTTTCAATGAAGTGAAGCAGATGGACTCTTCAACTGCATCTGCCTTTTACAATGCTTTGACTGACATGCTGTGGCATTTTGACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAAACGTTCAGAAGTGTGGGAAAATACATGGTCCACTTCTTGTTTGGATCTGCATTTGATGTCTTCAGGGGCTGCATGTGCAATGGTCCACGCATGGTTGCTTAGTATACGGTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359303" ref_strand="+" ref_description="SGN-E359303 [cLHT-31-K10]">
      <seq>ggtctgaaggcagatgttgcttcttgaactccttatagagatgccttgtgtaaaaaaggccttgtggagtattcgtcgttgttacttaatgagatgacgaaggaagggatacaaccaaatgttgttacatataactctataatcaatgcttttggtgaatcggcaaacaatgaatgtggatcagacaatgtcacacatattgtatccgctatttctcagagtaagtgggaaaacactgaagaggataatatcgttaagattttcgagcaattagctgctctaaagtcaactagtgggaagaaaactaatgctgaaagacaggacatgctctgcattctaggtgttttccataagatgcatgaattacaaataaagcctaatgtcgtcacgttttcagcaatcttgaatgcttgcagccgatgcagttcatttgatgaagcttcactcttacttgaagaactccgtctatttgataatcaagtttatggggtggcacatggacttctcatggggcagagggaaggtgtatggtcacaagctctatctcttttcaatgaagtgaagcagatagactcttcaactgcatctgccttttacaatgctttgactgacatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19764" stop="22412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20064" g_stop="20479" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20480" i_stop="21911" i_length="1432">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21912" g_stop="22112" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="617" r_length="201" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E359303" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20064" e_stop="20479"/>
          <exon e_start="21912" e_stop="22112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTGAAGGCAGATGTTGTTTTTTATAGCAAACTTATTGATGCCTTGTGTAAAAAAGGCCTTGTGGAGTATTCGTCGTTGTTGCTTAATGAGATGACGAAGGAAGGGATACAACCAAATGTTGTTACATATAACTCTATAATCAATGCTTTTGGTGAATCGGCAAACAATGAATGTGGATCAGACAATGTCACACATATTGTATCCGCTATTTCTCAAAGTAAGTGGGAAAACACTGAAGAGGATAATATCGTTAAGATTTTCGAGCAATTAGCTGCTCAAAAGTCAGCTAGTGGGAAGAAAACTAATGCTGAAAGACAGGACATGCTCTGCATTCTAGGTGTTTTCCATAAGATGCATGAATTACAAATAAAGCCTAATGTAGTCACGTTTTCAGCAATCTTGAATGCTTGCAGGTATAATTTTCTTTACTACTAGTTCCATGCTTTACATTGAACTGTGTTTTCTTAATGTGTCATCTTTTCATTATGTGAGGGTTAGTATGATCTATTTCAACTTTAAGAAGGCAGTTTGGCGGTTATATTTTTTGGGTGGTAGTTATGTTCATTTTCTTTGTAGTTTGAAGACGCATTTGATCATGGACATGAAATTAGTGCTACTGATTTTGTTTGTGGATAGGAATGCACATGCGCCAGTCTGACTTTCTGTCATTGTCTTGAATGCTGATGTATGTGTGCTATCTATATTCAATATGCTTCTTGTTTTCTGGTGAAATGCAGCTACAGACTTTTAAGATTGTTGTATATATGAAAACAATAAAGCAGAACTAACTTTTTGTAAGCCTTGGTGGGCGGAGTTATCCGTTACTTGCGCTAGTGGAAAGTAATTGGTTCCCTGTGGAATATTCAAGATGCGCACAAGGTGGTTGGACACCACTGTTGTTTAAAAATAAATAAAGCAGAAGAAACTTCTGAGTTTTCCACTGAGACAGATACTCTTTTCACTCTAATGAATGAAACTTTATTTTAAGCTTGGGTTATTCAAATGTGTGTAGTAGAGCTCCATAGACAATAGATCATATGACCTTGCTTAGAGTTCACAAGAGAGGCGGGGAGATAGAGGCGAGAGAGAGAGAGAGTGTTTTGGCCTTGAAGACTACTTACTATAGTTTCTTTTATTGTCTGAAGTGCTTTGAGGACTTCAGCAGCAGGTTGTGGGAGTAGTTTAAGTTGTCAATAAAGTGGACCCATTGCCACATTAAGAACACCCAATCTAAGGAGTTTTTTTTTTCCACTTCTAAATTACTTTGGATCAAGGGTGTTTGATAAGAAAAATATTTTTCCAGAAAATAAGTCATTTTTTTGGTCACCAAACACCAGGACATATGTTCCATTACAAGGGGGAAAATGACTATCTTTGCTTATTTTTTTCTCAATAGACTGTTTGAAATAGTTTTTGAATCTTAGAGATTGTTGGATAGTGAGAGAGTTTCTTTCATTTTCCAGAAAATATTTACCGGGAAATAATGTCCTTCCTACCAAACACACCCCAAATATTTTCTTCAAAGTGGGTAACACGAATCTGGAGAATGAGCAAAGAATTGTGTTGTATCAAAAGAAATATATTGTCAATTTGGCACAAATTTCCTTAGTAGAATTAGAAGTGGGTGAGAGTGCGAAAGAGGACAAATAAGATATGATTTTTTGGTGAGTAGCATTTTGTTTTTTCTTGATTAACCTTTTGAAGGAGTGCTCGGAAGAATTGCTACTTAAGACATTTAACATCTTTGTGAAATCCCAATGCACTTGATTGGTTCAAATGTTATGATTAAACTGAATGGATTTGACTATTTGAGTAGATATGATGTGTGATTAAATATAATTGCAGCCGATGCAGTTCATTTGATGAAGCTTCACTCTTACTCGAAGAACTCCGTCTATTTGATAACCAAGTTTATGGGGTGGCACATGGACTTCTCATGGGGCAGAGGGAAGGTGTATGGTCACAAGCTCTATCTCTTTTCAATGAAGTGAAGCAGATGGACTCTTCAACTGCATCTGCCTTTTACAATGCTTTGACTGACATGCT</genome_strand>
        <mrna_strand>GGTCTGAAGGCAGATGTTGCTTCTTGAACTCCTTATAGAGATGCCTTGTGTAAAAAAGGCCTTGTGGAGTATTCGTCGTTGTTACTTAATGAGATGACGAAGGAAGGGATACAACCAAATGTTGTTACATATAACTCTATAATCAATGCTTTTGGTGAATCGGCAAACAATGAATGTGGATCAGACAATGTCACACATATTGTATCCGCTATTTCTCAGAGTAAGTGGGAAAACACTGAAGAGGATAATATCGTTAAGATTTTCGAGCAATTAGCTGCTCTAAAGTCAACTAGTGGGAAGAAAACTAATGCTGAAAGACAGGACATGCTCTGCATTCTAGGTGTTTTCCATAAGATGCATGAATTACAAATAAAGCCTAATGTCGTCACGTTTTCAGCAATCTTGAATGCTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATGCAGTTCATTTGATGAAGCTTCACTCTTACTTGAAGAACTCCGTCTATTTGATAATCAAGTTTATGGGGTGGCACATGGACTTCTCATGGGGCAGAGGGAAGGTGTATGGTCACAAGCTCTATCTCTTTTCAATGAAGTGAAGCAGATAGACTCTTCAACTGCATCTGCCTTTTACAATGCTTTGACTGACATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212867" ref_strand="+" ref_description="SGN-E212867 [cLEC-73-D1]">
      <seq>cgttgttgcttaatgagatgacgaaggaagggatacaaccaaatgttgttacatataactctataatcaatgcttttggtgaatcggcaaacaatgaatgtggatcagacaatgtcacacatattgtatccgctatttctcaaagtaagtgggaaaacactgaagaggataatatcgttaagattttcgagcaattagctgctcaaaagtcagctagtgggaagaaaactaatgctgaaagacaggacatgctctgcattctaggtgttttccataagatgcatgaattacaaataaagcctaatgtagtcacgttttcagcaatcttgaatgcttgcagccgatgcagttcatttgatgaagcttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19840" stop="22241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20140" g_stop="20479" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20480" i_stop="21911" i_length="1432">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21912" g_stop="21941" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="370" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E212867" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20140" e_stop="20479"/>
          <exon e_start="21912" e_stop="21941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGTTGCTTAATGAGATGACGAAGGAAGGGATACAACCAAATGTTGTTACATATAACTCTATAATCAATGCTTTTGGTGAATCGGCAAACAATGAATGTGGATCAGACAATGTCACACATATTGTATCCGCTATTTCTCAAAGTAAGTGGGAAAACACTGAAGAGGATAATATCGTTAAGATTTTCGAGCAATTAGCTGCTCAAAAGTCAGCTAGTGGGAAGAAAACTAATGCTGAAAGACAGGACATGCTCTGCATTCTAGGTGTTTTCCATAAGATGCATGAATTACAAATAAAGCCTAATGTAGTCACGTTTTCAGCAATCTTGAATGCTTGCAGGTATAATTTTCTTTACTACTAGTTCCATGCTTTACATTGAACTGTGTTTTCTTAATGTGTCATCTTTTCATTATGTGAGGGTTAGTATGATCTATTTCAACTTTAAGAAGGCAGTTTGGCGGTTATATTTTTTGGGTGGTAGTTATGTTCATTTTCTTTGTAGTTTGAAGACGCATTTGATCATGGACATGAAATTAGTGCTACTGATTTTGTTTGTGGATAGGAATGCACATGCGCCAGTCTGACTTTCTGTCATTGTCTTGAATGCTGATGTATGTGTGCTATCTATATTCAATATGCTTCTTGTTTTCTGGTGAAATGCAGCTACAGACTTTTAAGATTGTTGTATATATGAAAACAATAAAGCAGAACTAACTTTTTGTAAGCCTTGGTGGGCGGAGTTATCCGTTACTTGCGCTAGTGGAAAGTAATTGGTTCCCTGTGGAATATTCAAGATGCGCACAAGGTGGTTGGACACCACTGTTGTTTAAAAATAAATAAAGCAGAAGAAACTTCTGAGTTTTCCACTGAGACAGATACTCTTTTCACTCTAATGAATGAAACTTTATTTTAAGCTTGGGTTATTCAAATGTGTGTAGTAGAGCTCCATAGACAATAGATCATATGACCTTGCTTAGAGTTCACAAGAGAGGCGGGGAGATAGAGGCGAGAGAGAGAGAGAGTGTTTTGGCCTTGAAGACTACTTACTATAGTTTCTTTTATTGTCTGAAGTGCTTTGAGGACTTCAGCAGCAGGTTGTGGGAGTAGTTTAAGTTGTCAATAAAGTGGACCCATTGCCACATTAAGAACACCCAATCTAAGGAGTTTTTTTTTTCCACTTCTAAATTACTTTGGATCAAGGGTGTTTGATAAGAAAAATATTTTTCCAGAAAATAAGTCATTTTTTTGGTCACCAAACACCAGGACATATGTTCCATTACAAGGGGGAAAATGACTATCTTTGCTTATTTTTTTCTCAATAGACTGTTTGAAATAGTTTTTGAATCTTAGAGATTGTTGGATAGTGAGAGAGTTTCTTTCATTTTCCAGAAAATATTTACCGGGAAATAATGTCCTTCCTACCAAACACACCCCAAATATTTTCTTCAAAGTGGGTAACACGAATCTGGAGAATGAGCAAAGAATTGTGTTGTATCAAAAGAAATATATTGTCAATTTGGCACAAATTTCCTTAGTAGAATTAGAAGTGGGTGAGAGTGCGAAAGAGGACAAATAAGATATGATTTTTTGGTGAGTAGCATTTTGTTTTTTCTTGATTAACCTTTTGAAGGAGTGCTCGGAAGAATTGCTACTTAAGACATTTAACATCTTTGTGAAATCCCAATGCACTTGATTGGTTCAAATGTTATGATTAAACTGAATGGATTTGACTATTTGAGTAGATATGATGTGTGATTAAATATAATTGCAGCCGATGCAGTTCATTTGATGAAGCTTCACT</genome_strand>
        <mrna_strand>CGTTGTTGCTTAATGAGATGACGAAGGAAGGGATACAACCAAATGTTGTTACATATAACTCTATAATCAATGCTTTTGGTGAATCGGCAAACAATGAATGTGGATCAGACAATGTCACACATATTGTATCCGCTATTTCTCAAAGTAAGTGGGAAAACACTGAAGAGGATAATATCGTTAAGATTTTCGAGCAATTAGCTGCTCAAAAGTCAGCTAGTGGGAAGAAAACTAATGCTGAAAGACAGGACATGCTCTGCATTCTAGGTGTTTTCCATAAGATGCATGAATTACAAATAAAGCCTAATGTAGTCACGTTTTCAGCAATCTTGAATGCTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATGCAGTTCATTTGATGAAGCTTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558831" ref_strand="+" ref_description="SGN-E558831 [18232]">
      <seq>tcgttagattttcgagcaattagctgctcaaaagtcagctagtgggaagaaaactaatgctgaaagagaggacatactctgcattctaggtgttttccataagatgcatgaattacaaataaagcctaatgtagtcacattttcagcaatcttgaatgcttgcagccgatgcagttcatttgatgaagcttcactcttactcgaagaacttcgtctatttgataatcaagtttatggggtggcacatggacttctcatgggtcagagggaaggtgtatgggcacaagctctatctcttttcgatgaagtgaagcagatggactcttcaactgcatctgccttttacaatgctttgactgacatgctgtggcattttgaccagaaacaaggtgctcaattggttgtacttgaaggaaaacgttcggaagtgtgggaaaatacatggtccacttcttgcttggatctgcatttgatgtcttcaggggctgcttgtgcaatggtccacgcatggttgcttagtatacggtctatagtgtttgaaggccatgagctaccaaagatgttgagcattttgactggctggggcaagcacagcaagataacaggtgatggcgccttgaaacgagccattgaaggcttgctcaccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20014" stop="23744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20314" g_stop="20479" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20480" i_stop="21911" i_length="1432">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21912" g_stop="22128" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="382" r_length="217" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22129" i_stop="23085" i_length="957">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23086" g_stop="23270" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="567" r_length="185" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23271" i_stop="23362" i_length="92">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23363" g_stop="23444" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="649" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E558831" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20314" e_stop="20479"/>
          <exon e_start="21912" e_stop="22128"/>
          <exon e_start="23086" e_stop="23270"/>
          <exon e_start="23363" e_stop="23444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTAAGATTTTCGAGCAATTAGCTGCTCAAAAGTCAGCTAGTGGGAAGAAAACTAATGCTGAAAGACAGGACATGCTCTGCATTCTAGGTGTTTTCCATAAGATGCATGAATTACAAATAAAGCCTAATGTAGTCACGTTTTCAGCAATCTTGAATGCTTGCAGGTATAATTTTCTTTACTACTAGTTCCATGCTTTACATTGAACTGTGTTTTCTTAATGTGTCATCTTTTCATTATGTGAGGGTTAGTATGATCTATTTCAACTTTAAGAAGGCAGTTTGGCGGTTATATTTTTTGGGTGGTAGTTATGTTCATTTTCTTTGTAGTTTGAAGACGCATTTGATCATGGACATGAAATTAGTGCTACTGATTTTGTTTGTGGATAGGAATGCACATGCGCCAGTCTGACTTTCTGTCATTGTCTTGAATGCTGATGTATGTGTGCTATCTATATTCAATATGCTTCTTGTTTTCTGGTGAAATGCAGCTACAGACTTTTAAGATTGTTGTATATATGAAAACAATAAAGCAGAACTAACTTTTTGTAAGCCTTGGTGGGCGGAGTTATCCGTTACTTGCGCTAGTGGAAAGTAATTGGTTCCCTGTGGAATATTCAAGATGCGCACAAGGTGGTTGGACACCACTGTTGTTTAAAAATAAATAAAGCAGAAGAAACTTCTGAGTTTTCCACTGAGACAGATACTCTTTTCACTCTAATGAATGAAACTTTATTTTAAGCTTGGGTTATTCAAATGTGTGTAGTAGAGCTCCATAGACAATAGATCATATGACCTTGCTTAGAGTTCACAAGAGAGGCGGGGAGATAGAGGCGAGAGAGAGAGAGAGTGTTTTGGCCTTGAAGACTACTTACTATAGTTTCTTTTATTGTCTGAAGTGCTTTGAGGACTTCAGCAGCAGGTTGTGGGAGTAGTTTAAGTTGTCAATAAAGTGGACCCATTGCCACATTAAGAACACCCAATCTAAGGAGTTTTTTTTTTCCACTTCTAAATTACTTTGGATCAAGGGTGTTTGATAAGAAAAATATTTTTCCAGAAAATAAGTCATTTTTTTGGTCACCAAACACCAGGACATATGTTCCATTACAAGGGGGAAAATGACTATCTTTGCTTATTTTTTTCTCAATAGACTGTTTGAAATAGTTTTTGAATCTTAGAGATTGTTGGATAGTGAGAGAGTTTCTTTCATTTTCCAGAAAATATTTACCGGGAAATAATGTCCTTCCTACCAAACACACCCCAAATATTTTCTTCAAAGTGGGTAACACGAATCTGGAGAATGAGCAAAGAATTGTGTTGTATCAAAAGAAATATATTGTCAATTTGGCACAAATTTCCTTAGTAGAATTAGAAGTGGGTGAGAGTGCGAAAGAGGACAAATAAGATATGATTTTTTGGTGAGTAGCATTTTGTTTTTTCTTGATTAACCTTTTGAAGGAGTGCTCGGAAGAATTGCTACTTAAGACATTTAACATCTTTGTGAAATCCCAATGCACTTGATTGGTTCAAATGTTATGATTAAACTGAATGGATTTGACTATTTGAGTAGATATGATGTGTGATTAAATATAATTGCAGCCGATGCAGTTCATTTGATGAAGCTTCACTCTTACTCGAAGAACTCCGTCTATTTGATAACCAAGTTTATGGGGTGGCACATGGACTTCTCATGGGGCAGAGGGAAGGTGTATGGTCACAAGCTCTATCTCTTTTCAATGAAGTGAAGCAGATGGACTCTTCAACTGCATCTGCCTTTTACAATGCTTTGACTGACATGCTGTGGCATTTTGACCAGGTAAAACTGCAGTTACATAACAACTATCAAAGAGAAGAAACGTATAGTGAATTTCTTCATTTTTTTTAGTTCTGATAAAGAGTGAAATTTCTCTTCATAGATGATGAGATTGTGATTATCAGTTTGTGGTGTATAGCTCTAGATATTTGCTTCAGTAGGCACCACCATCCTTTTTTAATGGGGAGAGGGCTTGGAACAATTCTATGTCATCCTCCAAATGTTCATTAGTTAGAATGTTTTATTACTATGGAATGCTTCAAGGAGCATGATTGAGGGCTAAAGAAAATTCTATTAGAGACTAATTTTATGTGAATCGTTTTTTCCACACCCAGAGATGTATTTTCATTAAGAAAAAACAGTTGAAATAATATAGAAAGCATAGACAGAGATGATATCATATCTAACAAGTCATGACTATATAGAATCATCTCGTTCATGGCTGTGAAGGCATAATCTCCAAAGTGGTACTTGTGATCTTCTTCCGTCACGATCTTGGATCTCCTCACCTTTCTTGCTCACTCCCTTAAGCTGACCTACCTGGCCTTATTGCATAGTTCAGCACTGGTGTCAAGGAAACCAAAATCTTCGCTCTGATCATTGTTAACTGACTAATATCACCTTTGCATTGCCATAAATTACCACTGACTCATGTTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCGGAAGTGCTCAATTGGTTGTTAACTGACTAATATCACCTTTGCATTGCCATAAATTACCACTGACTCATATTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCGGAAGTGCTCAATTGGTTGTTAACTGACTAATATCACCTTTGCATTGCCATAAATTACTACTGACTCATATTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCAGAAGTGTGGGAAAATACATGGTCCACTTCTTGTTTGGATCTGCATTTGATGTCTTCAGGGGCTGCATGTGCAATGGTCCACGCATGGTTGCTTAGTATACGGTCTATAGTGTTTGAAGGCCACGAGTTACCAAAGATGCTGAGGTATTTCCTCTAATTCTCTTATATTTTTTTCAAAGTCGGACAAACTACAAGAGTGATATATAATGAATGAAATGTTCAACTGTCCTCTGCAGCATTTTGACTGGCTGGGGCAAGCACAGCAAGATAACAGGTGATGGCGCCTTAAAACGAGCCATTGAAGGCTTGCTCACCAGC</genome_strand>
        <mrna_strand>TCGTT-AGATTTTCGAGCAATTAGCTGCTCAAAAGTCAGCTAGTGGGAAGAAAACTAATGCTGAAAGAGAGGACATACTCTGCATTCTAGGTGTTTTCCATAAGATGCATGAATTACAAATAAAGCCTAATGTAGTCACATTTTCAGCAATCTTGAATGCTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATGCAGTTCATTTGATGAAGCTTCACTCTTACTCGAAGAACTTCGTCTATTTGATAATCAAGTTTATGGGGTGGCACATGGACTTCTCATGGGTCAGAGGGAAGGTGTATGGGCACAAGCTCTATCTCTTTTCGATGAAGTGAAGCAGATGGACTCTTCAACTGCATCTGCCTTTTACAATGCTTTGACTGACATGCTGTGGCATTTTGACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCGGAAGTGTGGGAAAATACATGGTCCACTTCTTGCTTGGATCTGCATTTGATGTCTTCAGGGGCTGCTTGTGCAATGGTCCACGCATGGTTGCTTAGTATACGGTCTATAGTGTTTGAAGGCCATGAGCTACCAAAGATGTTGAG............................................................................................CATTTTGACTGGCTGGGGCAAGCACAGCAAGATAACAGGTGATGGCGCCTTGAAACGAGCCATTGAAGGCTTGCTCACCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352567" ref_strand="+" ref_description="SGN-E352567 [cTOS-9-N19]">
      <seq>cttactcgaagaactccgtctatttgataaccaagtttatggggtggcacatggacttctcatggggcagagggaaggtgtatggtcacaagctctatctcttttcaatgaagtgaagcagatggactcttcaactgcatctgccttttacaatgctttgactgacatgctgtggcattttgaccagaaacaaggtgctcaattggttgtacttgaaggaaaacgttcagaagtgtgggaaaatacatggtccacttcttgtttggatctgcatttgatgtcttcaggggctgcatgtgcaatggtccacgcatggttgcttagtatacggtctatagtgtttgaaggccacgagttaccaaagatgctgagcattttgactggctggggcaagcacagcaagataacaggtgatggcgccttaaaacgagccattgaaggcttgctcaccagcataggtgcaccattccagatagcaaagtgcaacattgggaggttcatatccactggtgctgtggtaactgcttggttgagagaatcaggtacactggaagtgcttgttcttcaagatgatacaagtcacttgcgtgccacaaggtttgatcaaatttctaatttacaacaactaacattgtagtcgtttctgtataattttgacaggggaatataaaattttttcagtgtaaattagtatataaatatatatattcctttgntaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21642" stop="24008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21942" g_stop="22128" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22129" i_stop="23085" i_length="957">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23086" g_stop="23270" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="372" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23271" i_stop="23362" i_length="92">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23363" g_stop="23707" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="717" r_length="345" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="718" polyA_stop="732"/>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E352567" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21942" e_stop="22128"/>
          <exon e_start="23086" e_stop="23270"/>
          <exon e_start="23363" e_stop="23707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTCGAAGAACTCCGTCTATTTGATAACCAAGTTTATGGGGTGGCACATGGACTTCTCATGGGGCAGAGGGAAGGTGTATGGTCACAAGCTCTATCTCTTTTCAATGAAGTGAAGCAGATGGACTCTTCAACTGCATCTGCCTTTTACAATGCTTTGACTGACATGCTGTGGCATTTTGACCAGGTAAAACTGCAGTTACATAACAACTATCAAAGAGAAGAAACGTATAGTGAATTTCTTCATTTTTTTTAGTTCTGATAAAGAGTGAAATTTCTCTTCATAGATGATGAGATTGTGATTATCAGTTTGTGGTGTATAGCTCTAGATATTTGCTTCAGTAGGCACCACCATCCTTTTTTAATGGGGAGAGGGCTTGGAACAATTCTATGTCATCCTCCAAATGTTCATTAGTTAGAATGTTTTATTACTATGGAATGCTTCAAGGAGCATGATTGAGGGCTAAAGAAAATTCTATTAGAGACTAATTTTATGTGAATCGTTTTTTCCACACCCAGAGATGTATTTTCATTAAGAAAAAACAGTTGAAATAATATAGAAAGCATAGACAGAGATGATATCATATCTAACAAGTCATGACTATATAGAATCATCTCGTTCATGGCTGTGAAGGCATAATCTCCAAAGTGGTACTTGTGATCTTCTTCCGTCACGATCTTGGATCTCCTCACCTTTCTTGCTCACTCCCTTAAGCTGACCTACCTGGCCTTATTGCATAGTTCAGCACTGGTGTCAAGGAAACCAAAATCTTCGCTCTGATCATTGTTAACTGACTAATATCACCTTTGCATTGCCATAAATTACCACTGACTCATGTTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCGGAAGTGCTCAATTGGTTGTTAACTGACTAATATCACCTTTGCATTGCCATAAATTACCACTGACTCATATTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCGGAAGTGCTCAATTGGTTGTTAACTGACTAATATCACCTTTGCATTGCCATAAATTACTACTGACTCATATTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCAGAAGTGTGGGAAAATACATGGTCCACTTCTTGTTTGGATCTGCATTTGATGTCTTCAGGGGCTGCATGTGCAATGGTCCACGCATGGTTGCTTAGTATACGGTCTATAGTGTTTGAAGGCCACGAGTTACCAAAGATGCTGAGGTATTTCCTCTAATTCTCTTATATTTTTTTCAAAGTCGGACAAACTACAAGAGTGATATATAATGAATGAAATGTTCAACTGTCCTCTGCAGCATTTTGACTGGCTGGGGCAAGCACAGCAAGATAACAGGTGATGGCGCCTTAAAACGAGCCATTGAAGGCTTGCTCACCAGCATAGGTGCACCATTCCAGATAGCAAAGTGCAACATTGGGAGGTTCATATCCACTGGTGCTGTGGTAACTGCTTGGTTGAGAGAATCAGGTACACTGGAAGTGCTTGTTCTTCAAGATGATACAAGTCACTTGCGTGCCACAAGGTTTGATCAAATTTCTAATTTACAACAACTAACATTGTAGTCGTTTCTGTATAATTTTGACAGGGGAATATAAAATTTTTCCAGTGTAAATTAGTATATAAATATATATATTCCTTTGTT</genome_strand>
        <mrna_strand>CTTACTCGAAGAACTCCGTCTATTTGATAACCAAGTTTATGGGGTGGCACATGGACTTCTCATGGGGCAGAGGGAAGGTGTATGGTCACAAGCTCTATCTCTTTTCAATGAAGTGAAGCAGATGGACTCTTCAACTGCATCTGCCTTTTACAATGCTTTGACTGACATGCTGTGGCATTTTGACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCAGAAGTGTGGGAAAATACATGGTCCACTTCTTGTTTGGATCTGCATTTGATGTCTTCAGGGGCTGCATGTGCAATGGTCCACGCATGGTTGCTTAGTATACGGTCTATAGTGTTTGAAGGCCACGAGTTACCAAAGATGCTGAG............................................................................................CATTTTGACTGGCTGGGGCAAGCACAGCAAGATAACAGGTGATGGCGCCTTAAAACGAGCCATTGAAGGCTTGCTCACCAGCATAGGTGCACCATTCCAGATAGCAAAGTGCAACATTGGGAGGTTCATATCCACTGGTGCTGTGGTAACTGCTTGGTTGAGAGAATCAGGTACACTGGAAGTGCTTGTTCTTCAAGATGATACAAGTCACTTGCGTGCCACAAGGTTTGATCAAATTTCTAATTTACAACAACTAACATTGTAGTCGTTTCTGTATAATTTTGACAGGGGAATATAAAATTTTTTCAGTGTAAATTAGTATATAAATATATATATTCCTTTGNT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352714" ref_strand="+" ref_description="SGN-E352714 [cTOS-11-H15]">
      <seq>cttactcgaagaactccgtctatttgataaccaagtttatggggtggcacatggacttctcatggggcagagggaaggtgtatggtcacaagctctatctcttttcaatgaagtgaagcagatggactcttcaactgcatctgccttttacaatgctttgactgacatgctgtggcattttgaccagaaacaaggtgctcaattggttgtacttgaaggaaaacgttcagaagtgtgggaaaatacatggtccacttcttgtttggatctgcatttgatgtcttcaggggctgcatgtgcaatggtccacgcatggttgcttagtatacggtctatagtgtttgaaggccacgagttaccaaagatgctgagcattttgactggctggggcaagcacagcaagataacaggtgatggcgccttaaaacgagccattgaaggcttgctcaccagcataggtgcaccattccagatagcaaagtgcaacattgggaggttcatatccactggtgctgtggtaactgcttggttgagagaatcaggtacactggaagtgcttgttcttcaagatgatacaagtcacttgcgtgccacaaggtttgatcaaatttctaatttacaacaactaacattgtagtcgtttctgtataattttgacaggggaatataaaattttttcagtgtnaattagtatataaatatatatattcccttttggtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21642" stop="24008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21942" g_stop="22128" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22129" i_stop="23085" i_length="957">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23086" g_stop="23270" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="372" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23271" i_stop="23362" i_length="92">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23363" g_stop="23704" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="714" r_length="342" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="720" polyA_stop="735"/>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E352714" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21942" e_stop="22128"/>
          <exon e_start="23086" e_stop="23270"/>
          <exon e_start="23363" e_stop="23704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTCGAAGAACTCCGTCTATTTGATAACCAAGTTTATGGGGTGGCACATGGACTTCTCATGGGGCAGAGGGAAGGTGTATGGTCACAAGCTCTATCTCTTTTCAATGAAGTGAAGCAGATGGACTCTTCAACTGCATCTGCCTTTTACAATGCTTTGACTGACATGCTGTGGCATTTTGACCAGGTAAAACTGCAGTTACATAACAACTATCAAAGAGAAGAAACGTATAGTGAATTTCTTCATTTTTTTTAGTTCTGATAAAGAGTGAAATTTCTCTTCATAGATGATGAGATTGTGATTATCAGTTTGTGGTGTATAGCTCTAGATATTTGCTTCAGTAGGCACCACCATCCTTTTTTAATGGGGAGAGGGCTTGGAACAATTCTATGTCATCCTCCAAATGTTCATTAGTTAGAATGTTTTATTACTATGGAATGCTTCAAGGAGCATGATTGAGGGCTAAAGAAAATTCTATTAGAGACTAATTTTATGTGAATCGTTTTTTCCACACCCAGAGATGTATTTTCATTAAGAAAAAACAGTTGAAATAATATAGAAAGCATAGACAGAGATGATATCATATCTAACAAGTCATGACTATATAGAATCATCTCGTTCATGGCTGTGAAGGCATAATCTCCAAAGTGGTACTTGTGATCTTCTTCCGTCACGATCTTGGATCTCCTCACCTTTCTTGCTCACTCCCTTAAGCTGACCTACCTGGCCTTATTGCATAGTTCAGCACTGGTGTCAAGGAAACCAAAATCTTCGCTCTGATCATTGTTAACTGACTAATATCACCTTTGCATTGCCATAAATTACCACTGACTCATGTTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCGGAAGTGCTCAATTGGTTGTTAACTGACTAATATCACCTTTGCATTGCCATAAATTACCACTGACTCATATTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCGGAAGTGCTCAATTGGTTGTTAACTGACTAATATCACCTTTGCATTGCCATAAATTACTACTGACTCATATTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCAGAAGTGTGGGAAAATACATGGTCCACTTCTTGTTTGGATCTGCATTTGATGTCTTCAGGGGCTGCATGTGCAATGGTCCACGCATGGTTGCTTAGTATACGGTCTATAGTGTTTGAAGGCCACGAGTTACCAAAGATGCTGAGGTATTTCCTCTAATTCTCTTATATTTTTTTCAAAGTCGGACAAACTACAAGAGTGATATATAATGAATGAAATGTTCAACTGTCCTCTGCAGCATTTTGACTGGCTGGGGCAAGCACAGCAAGATAACAGGTGATGGCGCCTTAAAACGAGCCATTGAAGGCTTGCTCACCAGCATAGGTGCACCATTCCAGATAGCAAAGTGCAACATTGGGAGGTTCATATCCACTGGTGCTGTGGTAACTGCTTGGTTGAGAGAATCAGGTACACTGGAAGTGCTTGTTCTTCAAGATGATACAAGTCACTTGCGTGCCACAAGGTTTGATCAAATTTCTAATTTACAACAACTAACATTGTAGTCGTTTCTGTATAATTTTGACAGGGGAATATAAAATTTTTCCAGTGTAAATTAGTATATAAATATATATATTCCTTT</genome_strand>
        <mrna_strand>CTTACTCGAAGAACTCCGTCTATTTGATAACCAAGTTTATGGGGTGGCACATGGACTTCTCATGGGGCAGAGGGAAGGTGTATGGTCACAAGCTCTATCTCTTTTCAATGAAGTGAAGCAGATGGACTCTTCAACTGCATCTGCCTTTTACAATGCTTTGACTGACATGCTGTGGCATTTTGACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCAGAAGTGTGGGAAAATACATGGTCCACTTCTTGTTTGGATCTGCATTTGATGTCTTCAGGGGCTGCATGTGCAATGGTCCACGCATGGTTGCTTAGTATACGGTCTATAGTGTTTGAAGGCCACGAGTTACCAAAGATGCTGAG............................................................................................CATTTTGACTGGCTGGGGCAAGCACAGCAAGATAACAGGTGATGGCGCCTTAAAACGAGCCATTGAAGGCTTGCTCACCAGCATAGGTGCACCATTCCAGATAGCAAAGTGCAACATTGGGAGGTTCATATCCACTGGTGCTGTGGTAACTGCTTGGTTGAGAGAATCAGGTACACTGGAAGTGCTTGTTCTTCAAGATGATACAAGTCACTTGCGTGCCACAAGGTTTGATCAAATTTCTAATTTACAACAACTAACATTGTAGTCGTTTCTGTATAATTTTGACAGGGGAATATAAAATTTTTTCAGTGTNAATTAGTATATAAATATATATATTCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737560" ref_strand="+" ref_description="SGN-E737560 [LC10BD01]">
      <seq>ggctgcaggaattcggcacgaggaagtttatggggtggcacatggacttctcatggggcagagggaaggtgtatggtcacaagctctatctcttttcaatgaagtgaagcagatggactcttcaactgcatctgccttttacaatgctttgactgacatgctgtggcattttgaccagaaacaaggtgctcaattggttgtacttgaaggaaaacgttcagaagtgtgggaaaatacatggtccacttcttgtttggatctgcatttgatgtcttcaggggctgcatgtgcaatggtccacgcatggttgcttagtatacggtctatagtgtttgaaggccacgagttaccaaagatgctgagcattttgactggctggggcaagcacagcaagataacaggtgatggcgccttaaaacgagccattgaaggcttgctcaccagcataggtgcaccattccagatagcaaagtgcaacattgggaggttcatatccactggtgctgtggtaactgcttggttgagagaatcaggtacactggaagtgcttgttcttcaagatgatacaagtcacttgcgtgccacaaggtttgatcaaatttctaatttacaacaactaacattgtagtcgtttctgtataattttgacaggggaatataaaatttttccagtgtaaattagtatataaatatatatattcctttgttatgtgaatgtcctattctaccgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21674" stop="24031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21977" g_stop="22128" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="178" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22129" i_stop="23085" i_length="957">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23086" g_stop="23270" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="363" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23271" i_stop="23362" i_length="92">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23363" g_stop="23731" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="732" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E737560" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21977" e_stop="22128"/>
          <exon e_start="23086" e_stop="23270"/>
          <exon e_start="23363" e_stop="23731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATGGGGTGGCACATGGACTTCTCATGGGGCAGAGGGAAGGTGTATGGTCACAAGCTCTATCTCTTTTCAATGAAGTGAAGCAGATGGACTCTTCAACTGCATCTGCCTTTTACAATGCTTTGACTGACATGCTGTGGCATTTTGACCAGGTAAAACTGCAGTTACATAACAACTATCAAAGAGAAGAAACGTATAGTGAATTTCTTCATTTTTTTTAGTTCTGATAAAGAGTGAAATTTCTCTTCATAGATGATGAGATTGTGATTATCAGTTTGTGGTGTATAGCTCTAGATATTTGCTTCAGTAGGCACCACCATCCTTTTTTAATGGGGAGAGGGCTTGGAACAATTCTATGTCATCCTCCAAATGTTCATTAGTTAGAATGTTTTATTACTATGGAATGCTTCAAGGAGCATGATTGAGGGCTAAAGAAAATTCTATTAGAGACTAATTTTATGTGAATCGTTTTTTCCACACCCAGAGATGTATTTTCATTAAGAAAAAACAGTTGAAATAATATAGAAAGCATAGACAGAGATGATATCATATCTAACAAGTCATGACTATATAGAATCATCTCGTTCATGGCTGTGAAGGCATAATCTCCAAAGTGGTACTTGTGATCTTCTTCCGTCACGATCTTGGATCTCCTCACCTTTCTTGCTCACTCCCTTAAGCTGACCTACCTGGCCTTATTGCATAGTTCAGCACTGGTGTCAAGGAAACCAAAATCTTCGCTCTGATCATTGTTAACTGACTAATATCACCTTTGCATTGCCATAAATTACCACTGACTCATGTTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCGGAAGTGCTCAATTGGTTGTTAACTGACTAATATCACCTTTGCATTGCCATAAATTACCACTGACTCATATTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCGGAAGTGCTCAATTGGTTGTTAACTGACTAATATCACCTTTGCATTGCCATAAATTACTACTGACTCATATTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCAGAAGTGTGGGAAAATACATGGTCCACTTCTTGTTTGGATCTGCATTTGATGTCTTCAGGGGCTGCATGTGCAATGGTCCACGCATGGTTGCTTAGTATACGGTCTATAGTGTTTGAAGGCCACGAGTTACCAAAGATGCTGAGGTATTTCCTCTAATTCTCTTATATTTTTTTCAAAGTCGGACAAACTACAAGAGTGATATATAATGAATGAAATGTTCAACTGTCCTCTGCAGCATTTTGACTGGCTGGGGCAAGCACAGCAAGATAACAGGTGATGGCGCCTTAAAACGAGCCATTGAAGGCTTGCTCACCAGCATAGGTGCACCATTCCAGATAGCAAAGTGCAACATTGGGAGGTTCATATCCACTGGTGCTGTGGTAACTGCTTGGTTGAGAGAATCAGGTACACTGGAAGTGCTTGTTCTTCAAGATGATACAAGTCACTTGCGTGCCACAAGGTTTGATCAAATTTCTAATTTACAACAACTAACATTGTAGTCGTTTCTGTATAATTTTGACAGGGGAATATAAAATTTTTCCAGTGTAAATTAGTATATAAATATATATATTCCTTTGTTATGTGAATGTCCTATTCTACCGTC</genome_strand>
        <mrna_strand>TTTATGGGGTGGCACATGGACTTCTCATGGGGCAGAGGGAAGGTGTATGGTCACAAGCTCTATCTCTTTTCAATGAAGTGAAGCAGATGGACTCTTCAACTGCATCTGCCTTTTACAATGCTTTGACTGACATGCTGTGGCATTTTGACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCAGAAGTGTGGGAAAATACATGGTCCACTTCTTGTTTGGATCTGCATTTGATGTCTTCAGGGGCTGCATGTGCAATGGTCCACGCATGGTTGCTTAGTATACGGTCTATAGTGTTTGAAGGCCACGAGTTACCAAAGATGCTGAG............................................................................................CATTTTGACTGGCTGGGGCAAGCACAGCAAGATAACAGGTGATGGCGCCTTAAAACGAGCCATTGAAGGCTTGCTCACCAGCATAGGTGCACCATTCCAGATAGCAAAGTGCAACATTGGGAGGTTCATATCCACTGGTGCTGTGGTAACTGCTTGGTTGAGAGAATCAGGTACACTGGAAGTGCTTGTTCTTCAAGATGATACAAGTCACTTGCGTGCCACAAGGTTTGATCAAATTTCTAATTTACAACAACTAACATTGTAGTCGTTTCTGTATAATTTTGACAGGGGAATATAAAATTTTTCCAGTGTAAATTAGTATATAAATATATATATTCCTTTGTTATGTGAATGTCCTATTCTACCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557797" ref_strand="+" ref_description="SGN-E557797 [16653]">
      <seq>atgaagtgaagcagatggacacttcaactgcatctgccttttcacaatgctttgactgacatgctgtggcatatttgaccataaacaaggtgctcaattggttgtacttgaaggaaaacgttcggaagtgtcgggaaaatacatggtccacttcttgctatggatctgcatttgatgtcttcaggggctgcatgtgcaatggtccacgcatggttgcttagtatacggtctatagtgtttagaaggccatgagctaccaaagatgttgagcattttgactggctggggcaagcacagcaagataacagggtgatggcgccttgaaacgagccattgaagcgtttgctcaccagcataggtgcaccattccaggtagcaaagtgcaacattgggaggttcatatccactggcagctgtggtaactgcctggttgagagaatcaggtacacttaaagtgcttgtccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21749" stop="23856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22049" g_stop="22128" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22129" i_stop="23085" i_length="957">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23086" g_stop="23270" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="270" r_length="188" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23271" i_stop="23362" i_length="92">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23363" g_stop="23556" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="467" r_length="197" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E557797" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22049" e_stop="22128"/>
          <exon e_start="23086" e_stop="23270"/>
          <exon e_start="23363" e_stop="23556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGTGAAGCAGATGGACTCTTCAACTGCATCTGCCTTTT-ACAATGCTTTGACTGACATGCTGTGGCAT-TTTGACCAGGTAAAACTGCAGTTACATAACAACTATCAAAGAGAAGAAACGTATAGTGAATTTCTTCATTTTTTTTAGTTCTGATAAAGAGTGAAATTTCTCTTCATAGATGATGAGATTGTGATTATCAGTTTGTGGTGTATAGCTCTAGATATTTGCTTCAGTAGGCACCACCATCCTTTTTTAATGGGGAGAGGGCTTGGAACAATTCTATGTCATCCTCCAAATGTTCATTAGTTAGAATGTTTTATTACTATGGAATGCTTCAAGGAGCATGATTGAGGGCTAAAGAAAATTCTATTAGAGACTAATTTTATGTGAATCGTTTTTTCCACACCCAGAGATGTATTTTCATTAAGAAAAAACAGTTGAAATAATATAGAAAGCATAGACAGAGATGATATCATATCTAACAAGTCATGACTATATAGAATCATCTCGTTCATGGCTGTGAAGGCATAATCTCCAAAGTGGTACTTGTGATCTTCTTCCGTCACGATCTTGGATCTCCTCACCTTTCTTGCTCACTCCCTTAAGCTGACCTACCTGGCCTTATTGCATAGTTCAGCACTGGTGTCAAGGAAACCAAAATCTTCGCTCTGATCATTGTTAACTGACTAATATCACCTTTGCATTGCCATAAATTACCACTGACTCATGTTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCGGAAGTGCTCAATTGGTTGTTAACTGACTAATATCACCTTTGCATTGCCATAAATTACCACTGACTCATATTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCGGAAGTGCTCAATTGGTTGTTAACTGACTAATATCACCTTTGCATTGCCATAAATTACTACTGACTCATATTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCAGAAGTGT-GGGAAAATACATGGTCCACTTCTTG-TTTGGATCTGCATTTGATGTCTTCAGGGGCTGCATGTGCAATGGTCCACGCATGGTTGCTTAGTATACGGTCTATAGTGTTT-GAAGGCCACGAGTTACCAAAGATGCTGAGGTATTTCCTCTAATTCTCTTATATTTTTTTCAAAGTCGGACAAACTACAAGAGTGATATATAATGAATGAAATGTTCAACTGTCCTCTGCAGCATTTTGACTGGCTGGGGCAAGCACAGCAAGATAACA-GGTGATGGCGCCTTAAAACGAGCCATTGAAG-GCTTGCTCACCAGCATAGGTGCACCATTCCAGATAGCAAAGTGCAACATTGGGAGGTTCATATCCACTGG-TGCTGTGGTAACTGCTTGGTTGAGAGAATCAGGTACACTGGAAGTGCTTGTTCTTC</genome_strand>
        <mrna_strand>ATGAAGTGAAGCAGATGGACACTTCAACTGCATCTGCCTTTTCACAATGCTTTGACTGACATGCTGTGGCATATTTGACCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCGGAAGTGTCGGGAAAATACATGGTCCACTTCTTGCTATGGATCTGCATTTGATGTCTTCAGGGGCTGCATGTGCAATGGTCCACGCATGGTTGCTTAGTATACGGTCTATAGTGTTTAGAAGGCCATGAGCTACCAAAGATGTTGAG............................................................................................CATTTTGACTGGCTGGGGCAAGCACAGCAAGATAACAGGGTGATGGCGCCTTGAAACGAGCCATTGAAGCGTTTGCTCACCAGCATAGGTGCACCATTCCAGGTAGCAAAGTGCAACATTGGGAGGTTCATATCCACTGGCAGCTGTGGTAACTGCCTGGTTGAGAGAATCAGGTACACTTAAAGTGCTTGTCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235639" ref_strand="+" ref_description="SGN-E235639 [cLED-15-M9]">
      <seq>actgactcatgtttggtgtcttatctaacttttttccagaaacaaggtgctcaattggttgtacttgaaggaaaacgttcggaagtgctcaattggttgttaactgactaatatcacctttgcattgccataaattaccactgactcatatttggtgtcttatctaacttttttccagaaacaaggtgctcaattggttgtacttgaaggaaaacgttcggaagtgctcaattggttgttaactgactaatatcacctttgcattgccataaattactactgactcatatttggtgtcttatctaacttttttccagaaacaaggtgctcaattggttgtacttgaaggaaaacgttcagaagtgtgggaaaatacatggtccacttcttgtttggatctgcatttgatgtcttcaggggctgcatgtgcaatggtccacgcatggttgcttagtatacggtctatagtgtttgaaggccacgagttaccaaagatgctgagcattttgactggctggggcaagcacagcaagataacaggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22469" stop="23705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22769" g_stop="23270" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23271" i_stop="23362" i_length="92">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23363" g_stop="23405" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="545" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E235639" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22769" e_stop="23270"/>
          <exon e_start="23363" e_stop="23405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGACTCATGTTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCGGAAGTGCTCAATTGGTTGTTAACTGACTAATATCACCTTTGCATTGCCATAAATTACCACTGACTCATATTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCGGAAGTGCTCAATTGGTTGTTAACTGACTAATATCACCTTTGCATTGCCATAAATTACTACTGACTCATATTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCAGAAGTGTGGGAAAATACATGGTCCACTTCTTGTTTGGATCTGCATTTGATGTCTTCAGGGGCTGCATGTGCAATGGTCCACGCATGGTTGCTTAGTATACGGTCTATAGTGTTTGAAGGCCACGAGTTACCAAAGATGCTGAGGTATTTCCTCTAATTCTCTTATATTTTTTTCAAAGTCGGACAAACTACAAGAGTGATATATAATGAATGAAATGTTCAACTGTCCTCTGCAGCATTTTGACTGGCTGGGGCAAGCACAGCAAGATAACAGGTGAT</genome_strand>
        <mrna_strand>ACTGACTCATGTTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCGGAAGTGCTCAATTGGTTGTTAACTGACTAATATCACCTTTGCATTGCCATAAATTACCACTGACTCATATTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCGGAAGTGCTCAATTGGTTGTTAACTGACTAATATCACCTTTGCATTGCCATAAATTACTACTGACTCATATTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCAGAAGTGTGGGAAAATACATGGTCCACTTCTTGTTTGGATCTGCATTTGATGTCTTCAGGGGCTGCATGTGCAATGGTCCACGCATGGTTGCTTAGTATACGGTCTATAGTGTTTGAAGGCCACGAGTTACCAAAGATGCTGAG............................................................................................CATTTTGACTGGCTGGGGCAAGCACAGCAAGATAACAGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315247" ref_strand="+" ref_description="SGN-E315247 [cTOA-24-O11]">
      <seq>ttgaccagaaacaaggtgctcaattggttgtacttgaaggaaaacgttcagaagtgtgggaaaatacatggtccacttcttgtttggatctgcatttgatgtcttcaggggctgcatgtgcaatggtccacgcatggttgcttagtatacggtctatagtgtttgaaggccacgagttaccaaagatgctgagcattttgactggctggggcaagcacagcaagataacaggtgatggcgccttaaaacgagccattgaaggcttgctcaccagcataggtgcaccattccagatagcaaagtgcaacattgggaggttcatatccactggtgctgtggtaactgcttggttgagagaatcaggtacactggaagtgcttgttcttcaagatgatacaagtcacttgcgtgccacaaggtttgatcaaatttctaatttacaacaactaacattgtagtcgtttctgtataattttgacaggggaatataaaatttttccagtgtaaattagtatataaatatatatattcctttgttatgtgaatgtcctattctaccgtcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22778" stop="24032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23078" g_stop="23270" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23271" i_stop="23362" i_length="92">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23363" g_stop="23745" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="576" r_length="383" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E315247" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23078" e_stop="23270"/>
          <exon e_start="23363" e_stop="23745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCAGAAGTGTGGGAAAATACATGGTCCACTTCTTGTTTGGATCTGCATTTGATGTCTTCAGGGGCTGCATGTGCAATGGTCCACGCATGGTTGCTTAGTATACGGTCTATAGTGTTTGAAGGCCACGAGTTACCAAAGATGCTGAGGTATTTCCTCTAATTCTCTTATATTTTTTTCAAAGTCGGACAAACTACAAGAGTGATATATAATGAATGAAATGTTCAACTGTCCTCTGCAGCATTTTGACTGGCTGGGGCAAGCACAGCAAGATAACAGGTGATGGCGCCTTAAAACGAGCCATTGAAGGCTTGCTCACCAGCATAGGTGCACCATTCCAGATAGCAAAGTGCAACATTGGGAGGTTCATATCCACTGGTGCTGTGGTAACTGCTTGGTTGAGAGAATCAGGTACACTGGAAGTGCTTGTTCTTCAAGATGATACAAGTCACTTGCGTGCCACAAGGTTTGATCAAATTTCTAATTTACAACAACTAACATTGTAGTCGTTTCTGTATAATTTTGACAGGGGAATATAAAATTTTTCCAGTGTAAATTAGTATATAAATATATATATTCCTTTGTTATGTGAATGTCCTATTCTACCGTCACTTTAAACTGAAC</genome_strand>
        <mrna_strand>TTGACCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCAGAAGTGTGGGAAAATACATGGTCCACTTCTTGTTTGGATCTGCATTTGATGTCTTCAGGGGCTGCATGTGCAATGGTCCACGCATGGTTGCTTAGTATACGGTCTATAGTGTTTGAAGGCCACGAGTTACCAAAGATGCTGAG............................................................................................CATTTTGACTGGCTGGGGCAAGCACAGCAAGATAACAGGTGATGGCGCCTTAAAACGAGCCATTGAAGGCTTGCTCACCAGCATAGGTGCACCATTCCAGATAGCAAAGTGCAACATTGGGAGGTTCATATCCACTGGTGCTGTGGTAACTGCTTGGTTGAGAGAATCAGGTACACTGGAAGTGCTTGTTCTTCAAGATGATACAAGTCACTTGCGTGCCACAAGGTTTGATCAAATTTCTAATTTACAACAACTAACATTGTAGTCGTTTCTGTATAATTTTGACAGGGGAATATAAAATTTTTCCAGTGTAAATTAGTATATAAATATATATATTCCTTTGTTATGTGAATGTCCTATTCTACCGTCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561166" ref_strand="+" ref_description="SGN-E561166 [17115]">
      <seq>ctgtggcattttgaccagaaacaaggtgctcaattggttgtacttgaaggaaaacgttcggaagtgtgggaaaatacatggtccacttcttgcttggatctgcatttgatgtcttcaggggctgcttgtgcaatggtccacgcatggttgcttagtatacggtctatagtgtttgaaggccatgagctaccaaagatgttgagcattttgactggctggggcaagcacagcaagataacaggtgatggcgccttgaaacgatccattgaaggcttgctcaccagcataggtgcaccattccaggtagcaaagtgcaacattgggaggttcatatccactggagctgtggtaactgcttggttgagagaatcaggtacacttgaagtgcttgttcttcaagatgatacaagtcacttgcgtgccacaaggtttggacaaatttctaatttacagcaactaacattgtagtcgtttatgtataatttgacaggggaatataacatttttccattgtaaattagtatataaaatatatattcctttgttgggtgtgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22770" stop="24012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23086" g_stop="23270" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="203" r_length="185" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23271" i_stop="23362" i_length="92">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23363" g_stop="23707" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="546" r_length="343" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="564"/>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E561166" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23086" e_stop="23270"/>
          <exon e_start="23363" e_stop="23707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCAGAAGTGTGGGAAAATACATGGTCCACTTCTTGTTTGGATCTGCATTTGATGTCTTCAGGGGCTGCATGTGCAATGGTCCACGCATGGTTGCTTAGTATACGGTCTATAGTGTTTGAAGGCCACGAGTTACCAAAGATGCTGAGGTATTTCCTCTAATTCTCTTATATTTTTTTCAAAGTCGGACAAACTACAAGAGTGATATATAATGAATGAAATGTTCAACTGTCCTCTGCAGCATTTTGACTGGCTGGGGCAAGCACAGCAAGATAACAGGTGATGGCGCCTTAAAACGAGCCATTGAAGGCTTGCTCACCAGCATAGGTGCACCATTCCAGATAGCAAAGTGCAACATTGGGAGGTTCATATCCACTGGTGCTGTGGTAACTGCTTGGTTGAGAGAATCAGGTACACTGGAAGTGCTTGTTCTTCAAGATGATACAAGTCACTTGCGTGCCACAAGGTTTGATCAAATTTCTAATTTACAACAACTAACATTGTAGTCGTTTCTGTATAATTTTGACAGGGGAATATAAAATTTTTCCAGTGTAAATTAGTATATAAATATATATATTCCTTTGTT</genome_strand>
        <mrna_strand>AAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCGGAAGTGTGGGAAAATACATGGTCCACTTCTTGCTTGGATCTGCATTTGATGTCTTCAGGGGCTGCTTGTGCAATGGTCCACGCATGGTTGCTTAGTATACGGTCTATAGTGTTTGAAGGCCATGAGCTACCAAAGATGTTGAG............................................................................................CATTTTGACTGGCTGGGGCAAGCACAGCAAGATAACAGGTGATGGCGCCTTGAAACGATCCATTGAAGGCTTGCTCACCAGCATAGGTGCACCATTCCAGGTAGCAAAGTGCAACATTGGGAGGTTCATATCCACTGGAGCTGTGGTAACTGCTTGGTTGAGAGAATCAGGTACACTTGAAGTGCTTGTTCTTCAAGATGATACAAGTCACTTGCGTGCCACAAGGTTTGGACAAATTTCTAATTTACAGCAACTAACATTGTAGTCGTTTATGTATAA-TTTGACAGGGGAATATAACATTTTTCCATTGTAAATTAGTATATAAA-ATATATATTCCTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552285" ref_strand="+" ref_description="SGN-E552285 [cTSB-3-G8]">
      <seq>acttgaaggaaaacgttcagaagtgtgggaaaatacatggtccacttcttgtttggatctgcatttgatgtcttcaggggctgcatgtgcaatggtccacgcatggttgcttagtatacggtctatagtgtttgaaggccacgagttaccaaagatgctgagcattttgactggctggggcaagcacagcaagataacaggtgatggcgccttaaaacgagccattgaaggcttgctcaccagcataggtgcaccattccagatagcaaagtgcaacattgggaggttcatatccactggtgctgtggtaactgcttggttgagagaatcaggtacactggaagtgcttgttcttcaagatgatacaagtcacttgcgtgccacaaggtttgatcaaatttctaatttacaacaactaacattgtagtcgtttctgtataattttgacaggggaatataaaatttttccagtgtaaattagtatataaatatatatattcctttgttatgtgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22809" stop="24014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23109" g_stop="23270" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23271" i_stop="23362" i_length="92">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23363" g_stop="23713" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="513" r_length="351" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="514" polyA_stop="531"/>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E552285" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23109" e_stop="23270"/>
          <exon e_start="23363" e_stop="23713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGAAGGAAAACGTTCAGAAGTGTGGGAAAATACATGGTCCACTTCTTGTTTGGATCTGCATTTGATGTCTTCAGGGGCTGCATGTGCAATGGTCCACGCATGGTTGCTTAGTATACGGTCTATAGTGTTTGAAGGCCACGAGTTACCAAAGATGCTGAGGTATTTCCTCTAATTCTCTTATATTTTTTTCAAAGTCGGACAAACTACAAGAGTGATATATAATGAATGAAATGTTCAACTGTCCTCTGCAGCATTTTGACTGGCTGGGGCAAGCACAGCAAGATAACAGGTGATGGCGCCTTAAAACGAGCCATTGAAGGCTTGCTCACCAGCATAGGTGCACCATTCCAGATAGCAAAGTGCAACATTGGGAGGTTCATATCCACTGGTGCTGTGGTAACTGCTTGGTTGAGAGAATCAGGTACACTGGAAGTGCTTGTTCTTCAAGATGATACAAGTCACTTGCGTGCCACAAGGTTTGATCAAATTTCTAATTTACAACAACTAACATTGTAGTCGTTTCTGTATAATTTTGACAGGGGAATATAAAATTTTTCCAGTGTAAATTAGTATATAAATATATATATTCCTTTGTTATGTGA</genome_strand>
        <mrna_strand>ACTTGAAGGAAAACGTTCAGAAGTGTGGGAAAATACATGGTCCACTTCTTGTTTGGATCTGCATTTGATGTCTTCAGGGGCTGCATGTGCAATGGTCCACGCATGGTTGCTTAGTATACGGTCTATAGTGTTTGAAGGCCACGAGTTACCAAAGATGCTGAG............................................................................................CATTTTGACTGGCTGGGGCAAGCACAGCAAGATAACAGGTGATGGCGCCTTAAAACGAGCCATTGAAGGCTTGCTCACCAGCATAGGTGCACCATTCCAGATAGCAAAGTGCAACATTGGGAGGTTCATATCCACTGGTGCTGTGGTAACTGCTTGGTTGAGAGAATCAGGTACACTGGAAGTGCTTGTTCTTCAAGATGATACAAGTCACTTGCGTGCCACAAGGTTTGATCAAATTTCTAATTTACAACAACTAACATTGTAGTCGTTTCTGTATAATTTTGACAGGGGAATATAAAATTTTTCCAGTGTAAATTAGTATATAAATATATATATTCCTTTGTTATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334159" ref_strand="+" ref_description="SGN-E334159 [cTOD-21-I10]">
      <seq>tgagcagcgcgagatctgtttgtgctaatcactaagggacgtcaatactctctcttgccggcaatggcatccagctacttctatgtatgcacaatcatatcaattattctctacgtttccgccactgccgctgctgattcaattcaaggatgtggggggtttgttgaggcaagttcggaactgatcaagtcaaggaagtcaagcgatccgaaattggattattctaatatcattgttgagcttcgcacattggatggcttggtgaaggaaagaacacactgtgcccctaatggttattacttcattccagtgtatgataagggttctttcttgatcaaagtcaatggaccagaggggtggtcatgggatcctgaacaagtacctgtttcaattgatcatactggctgcaatggcaatgaagatataaattttcgcttcaccgggttcactgtatctggacgaattgtgggaaatgatggtggggaaagctgtgctctgaaagatggaggtccatcaaatgtgaaagttgagttattgtctcccacaggtggtgttgtgtcctctgcattatcaacacccagaggaacatactccttctcaaacgctatacccgggaagtacaaattacgtgcatcacgtcatgacttgaatgttcaagttagaggatcggccgagattgatttggggttcgaaaatagatattggaggacttcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34287" stop="26308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33987" g_stop="33820" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33819" i_stop="33271" i_length="549">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33270" g_stop="33205" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="234" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33204" i_stop="32137" i_length="1068">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32136" g_stop="32050" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="321" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32049" i_stop="27748" i_length="4302">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27747" g_stop="27691" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="378" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27690" i_stop="27541" i_length="150">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27540" g_stop="27476" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="443" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27475" i_stop="27274" i_length="202">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27273" g_stop="27104" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="613" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27103" i_stop="26882" i_length="222">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26881" g_stop="26820" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="675" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="26819" i_stop="26653" i_length="167">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="26652" g_stop="26608" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="719" r_length="44" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E334159" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33987" e_stop="33820"/>
          <exon e_start="33270" e_stop="33205"/>
          <exon e_start="32136" e_stop="32050"/>
          <exon e_start="27747" e_stop="27691"/>
          <exon e_start="27540" e_stop="27476"/>
          <exon e_start="27273" e_stop="27104"/>
          <exon e_start="26881" e_stop="26820"/>
          <exon e_start="26652" e_stop="26608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCAGCGCGAGATCTGTTTGTGCTAATCACTAAGGGACGTCAATACTCTCTCTTGCCGGCAATGGCATCCAGCTACTTCTATGTATGCACAATCATATCAATTATTCTCTACGTTTCCGCCACTGCCGCTGCTGATTCAATTCAAGGATGTGGGGGGTTTGTTGAGGTGATTTCAACTAATTTCCTTTTGATTTTTTGCTTGATTTTTGATTTTTCGAATGAAAAAAATTCAGTCTTTGAAGCCTGTTGAGCTAGTTTTTGTAGAAGGGGTTATTGGGTATCGGAAATTAGTTGATTTCGAATCAGAGAATGCAAAATCGTTTTTAGTTTTAAAGATTCTGAGTGGTTCTCTTGTATTTCTTTAATGTCGATTGGTTTTAGTAGATGAAGAGATTGACACTTACATTGTATACTGGGTATCTGATATTAGTTGATTTTGAATCAGAAAATGCAAACTCGTTTTTAGGTTTGAAAATCTGAGTGTTTTTTTAGTATTTTGTTGATGTCCATTGATTTTAGTTGGTGAAGAGTTTGATACTTACACTGTATACTGGGTATCTGATATTAGTTGATTTGAAATCAGAGAATGCAATATTGTTTTAGGTTTTAAAGATTCTGAGCTGTTTTTAGTATTTCCTTAATGTCCATTGGTTTTAGTAGGTGAAGAGTTTGATACTGATCTAGGTTATTTCTATTTTTCGTTTTTTTGCTGTAGGCAAGTTCGGAACTGATCAAGTCAAGGAAGTCAAGCGATCCGAAATTGGATTATTCTAATATCATTGTATGTGGCAACTACTGATTAATTGATAAGCATTTATTGTTCTCCTTTATTTTACTCTCTCACCTTATGGGTACCTGATAGTATCAGTCAACTAAACATTGATCCTGGACTAGATGAGGTCTGCTAGATGAATCATGTATATTCACTTTGTTGGTACTTGGTACTGACATAAAAAAAAAAGGAACTTTATCCTCTATGTTGGATGAATAGCCTGTAAAGCTCGGTTTTGCTTTTCATATTCTGTATCTGTGAAGTAGTGATTTCTCCTTTTTCAAGTTTCTATTCTGATTGGATTCATTATAGATCATTCAAACAAAGAACCATTCAAGTCTGCTTATACTTACGTTCCTCCTTAAGGTGGGGTTACTTTAGAGAAAGCAAATCCTGAAATGCTATCACTGAAACTCAGCTCAATAGAAAATATATAAATCAAAAAAGGCAAATTTTGTATAATATCTCATAATGATGAATTATTTAGTATGTATACATGTTTCATCTTACATTGGATGATGACAGTTAAGAAATTAAAGTCAGGGACTACATTCCAAGAAGTTCATTAGTGCTACAAATTCATAATTCGTAGAGGGTATGATCATACTATTATTCATATATTGAAAAAATTAGTGCTGAGGGAAAAGGAGGTCAATTTTTACCGTCATAAACATAAATTTATTCCTCTTTTTGATAAGCATAAACCATAAATTCTTGACAGTTAGCTCACATTCCTTTCCTTGAATGATTAAGTGTTGTTTTTATCTTAACCATTGTTTGGTTCTATTATATGCTACATTTTGCTTATGTGTGAAAAAAATTTCCCATGGGATATTAGCACCGTGCACCAGGTCCTATGCATTGCAGCCCTAGGTTAAAAAGTGTTGGGATTTTCTAATTTATCTTCTCAAGTTTATAGTGTTTAACAGTTATTTATACACTGTGTTGATGGGTGCTGTAGTATGCGATTATACCTTATATTGTCAGTCGGCCTTTGCCAATTTACACATTACAATGTAATTAACTCCGTAAGGATAACACACTAGATCTTCCAATCATATGTTTCTTCTAATGCAGGTTGAGCTTCGCACATTGGATGGCTTGGTGAAGGAAAGAACACACTGTGCCCCTAATGGTTATTACTTCATTCCAGTGTATGATAAGGTACTTCTTCCTGATGGTACTGAGTTGTACATTTTATTGGTCTGACTTATGTTTTTTTCCTTCTTTCTTGGTAAGCCAACAAACTTATGTTGTCATTAGTGTTTTGAGGTTGGTACTGTACTTTAACCGTCCTTAAATTAGAATATTGGTTTATGCCTCAACCAGATTTCCAAGGGCCTATGTACCACTTAAGGCAACTGAAATCTCTTGAGGAATAAGTTATTTAGCCCAAGATATTTAGAGGTAGTTCGGTTGGTAAACAAGTTGTATGAAGATTCTTATGTCGGGATTATAATAAGAGGGTCAAATAATGACAAATTATTTGGTGGATATACTTTATTGGTAGATGTATGCTTCATTGAACTAAAAGTCGGATGTATGAATAACAAAACACATGTTTTTGATGAAATGTAACATATAGTGTACGGGTATAAATGTGACACAACATGTGTTTTGTGTTACAAGATAATTGAGATGAAGATGAACTTTTTTTTTTCAATTTTAATCTTGAAAGTACTTTGGCAGAAGAGCTTTGAAGAAGGTTATATTTGTCATTTTGGTGTTTATCCTATGTTAAGTGTGATGTAAAAGTATCAATGAAAATAAACCTTGATAAAAAAAGTGTGTTATAAAAGTGATACCACAATAATTAAGTGGAGATTTGCTATTTCTGGAATCAAAAGTTCAACCAAATGCGGGATAAAATAATTCTATGTTTTATCCTAAGATCGTTATTCCTTATCCCTTAAACCAAACAACCCCTTAAAGTATTATTTTTACACGATTGACAACACAAGCATCATATAGAATCTTATCTAATTTAAAGATGTAATAGACCTGACTTTAAAAGGGGGAGATAGACAGGTGTGCCTTGCATGTATATATAGAGTATTTTTACATGGTTTGGTCTAACATCTTTTAATAGATGTTGCATTGTGTGACTGTCTCATCTAAAATTTTAAGTTGGTAGAGAGGTTATGCTTTTATTTGACTTTGTCTTCAATATGCCACTCACTTGCGGACTTTTTTTTCTTCATAGGCTTAACATGTATAAAATATTTTGATAAATGGGTGGCAGTGTGATTTGAACCAGAATTTCTGGTTGCTCTGATACCATGCCAAATTTTTTTGACTGCCTCATCTAAGAACTTCAGTTGTTAGAGAGGATACCCTTCCATTTAACTTAGTAACTTCGTCAATTTACTTAAACAAAATATGGAGAACTAAACCCCCGGCGTACAGAAATCACCTCTGAACCATATGGGGTGGGGTATGGAGGACAATCAGGAACCTATGGTCACAAATAGAAGGAAATATGTATATCAAGGTGGGTAATGGAAACAAAACTGAAGTTTGGAAAGATGGCTGGATAGACCAAACGTCTCTCAGGGACTTTTTTCCAGATTTGTTTCTAATCTGTGAAAACCCTGATGCTAAAGTGAGTGACTGTTGGACAGAATAGGGATGGGGCATATCTATAAGAAGACTACTCAATGACTGGGAGGTCGAGAGGGTGCCAGCGTTATTGGGAGAACTAGCTGGAATGATTATAACCACAACAAAATCCTGTGGAAACATAGCAAGGATGGACTCTTTTCAGTCAACAATGCCTACAAAAGAGGACTACATGGGATGACCGGGGGCCAAAAATATGATTGGAATTACTTTTGGAAGAGTGACATTCCTACAAAAATGAAGTGTTTCACCTGGTTAGTGTTGTTTAACACAAGAAGTTCTACAGAAGAAAGGCAGGCAGTTGGTCCCTAGGTGTTTTTTGTGCAACTTGACAGGGAAACAAATAGCCATCTCTTCCTGCATAGTAATGTAAGTTTACTGCTCAAATTTGGAACCTGTTTCTCAACATCACAAGCATGAACAAGACAATGCCAGAGCATACATTAGATCTGTTGAGCTACTAGATTAGGAGGGGAGATATTCATGTTTAACCAAAAAAAAGAAAAGAACCATATAATTCAGCTTCATATTCTGCATTGAGCAACTCTTGCTTTTAAAACATCTCTGGTTTCTCTCCATGCATATAGACCACCAAATGCAGGTAGGGACAATCTTCCATCACTTCTGTGGCCTGACTGATTCCCATCTCTGTTCCAGTTAGCTAGAGCTTCTTTGATGTTCCTTGGCATAGTCCAACTGATGCCCCTTAAGTTGATGAAAATTTGCCACAACTTCAGTTTCTCTACAATGTAGAAGGAGATGGTAAATTTTCTCGACCTCACATTCACAAGACCAACACTTGGAACAGATCTGCAAACCTCTTCTCACGAGGTTGTGTTGAGTGAGTGCAGCCTGATTGGTTAACAACCAAATGAAACATGCTACCTTGAATAGTATCTTGACTTTCCAAATCATCCTCCAAGGCCATCACCTATATGAGTACCAGGTCTTTGTGAGCTATAAGCTGAGCCAACTTAATATCTACCTTGCTTATCTGAATACCAGAATAGATTATCCTCATTTGTGCTTAAATATTTGCACTGCAGCAGCTCAACTATTCTATTCTAAGTTGCTCGGACTCAGGTGCGGGTGTCCGATACGGGTGCGGCTTCGAAGGATCCTTCCTGATCTAATTTTTTAGATTCAGGAATACGGATCCATGTATGGATGCGGGTGAGTGGATTTGCCTAGAAGTAATTAAAATGTGTAAAAATAGAGTTATAAAACCTAAATTATGGGATATTATGAGTAGAACTCGAGGAGAATCTTGGAATGAGATTAAAGGAAAATGAGTGACGTAGAAATTTCTATATAAAAGGTATTCCATTTTCTTTAATTCACCTTAGCTTTTGTATGTATTACAGAAATCATTAAAACTGCCGAAATTTCCCATGGATTTTGGTCAAGGTACCCAAAATCGGTTGACCAAATTGGACATGGATCCCATATCCACACCCATGTCGTGTCGACACGGGTTCGTCTGTAAAAGTGAAGAGTCCGAGCAACTTATATTCCATTGACCTCCCAATCATTTATACGTCTTCTAAACCTGAGATCTCACCCCTGATTGTCTCTCGTTTCTCTCGTTTCTCTGATAGCCACTTCATAACTAAGCTTTGATTTGGGATTTTTAGATTCCTAATCCCCAAATGTTCTTTTTTTTACTGAGAAATACATTGTAGAGGGCTATATAAGGTGAGTATAGAATACAAGATGCTGAATTAGACAACCACAAATCACTACCTGACCATGGAAATACATTTGGAAGGTCAAGATACCTTACAAAGTTGCCTGCTTCACATGACTGTTAGCACAAAAGGCTGTTTTGGACACATGAAAACTTGATGAAAAGAGGAACCACTCTTTTTTCAAGAATGCTATCTACGTGGGAATGAAGCTAAGATAGAGAACCACTTATTTCTACTCCAAATTGACCTTATATTCAAGGGGCATACCAACAGGTAAAAAATCTACAAGATATGATTCTCTACAAACTCTGCCCAATCATCTATACAACAAGGAACTTCCGTTTTACCCCAAAAGAAAATAAGGGAGCATAGACTACTCCTCAATGGATAAGGAACTCTACTATTTCCCTCTCTCCAAACTACCCACATTATTGCAAATGTTGTCCGACTCAAGATAACCTAGCCAAAATTGGGCATGTGACAACAGATTTACGGAGTATGTTTATAAACAGTTCTTGAACTAGGTTGGGTCATGCCACAGAATATCAGGGATGTTTCTGAGAGTTGGAGTTGCTGGAAAGTGTATAGCACCATCCAGAGAATCTGGCTGATGACACTTGCTACTATTTTTTTGGAATATCTGGAATGCAAGGAATATGAGATGCTTTGATGGAAGTATCAACTAAATCTAGATGTCTTCTGTTTTTGTATAGGTGGGTTTATCCTCAATAAATGTATACCTTCTTGAATTTTGTCAGCTCCCTAGCTCTCTACTAAATATGTACTGGAGTTGATAAGTTATTTTTGCTACTCTACTTTTGTTACTATCATGCATCCACTTGATGCCAACAATGGAACTTTTACTTTGTCAAAAAAAAAAGACAAAGGAAAAGAGAAGTGAGAGAAACTCAAAGTTGTTGGGTTTAAATAACTAGATGTTTATATTCTTAAGAAAGAAAGAGAATCAAAAATATAATTACAACCTATACTATATTTATAAGATCCTAGAATATCCTAGATACAACTATTCTATTAGTCCATTCACAGCCTGTCTTCTTGGTTTATATTTTGCTTCCTTCCTTTGCCATCGGTGTTCTCACTTCTCTTGTTTTCTGAGAAATGAAAGAATTTCTCACATCGCATTGAAATCATTTTGCAGGGTTCTTTCTTGATCAAAGTCAATGGACCAGAGGGGTGGTCATGGGATCCTGAACAAGTTGAGTGTCTTCAATGTTATATTGATGACAATTTTGTCAGCATTTGCACTTTCATTGATTCCAGCTCAATGTCCCCCCCCCCCTTCCCCCCTCCCCCCCCCCTCTCTTTTCTGGCTGGTGTATCTGACCAAAGGAGGATCTTTCTGTAGGTACCTGTTTCAATTGATCATACTGGCTGCAATGGCAATGAAGATATAAATTTTCGCTTCACCGGGTTTGTTCTTATTCTTCTAACATTGAAATTAGTCTTTGGATCCTTTGTTCCATAAATAAAGAACAAAAGAGGGGTAAATTTAAACTTTTACAATGTTTATTTTGTTTGCCACACAGCTATTTATCAATATATTCCATATAATGTGCAGTATGGACTATCCACTTCTCTACATGCTAATTTTCTCGAGTCACTGTTTCTGCAGGTTCACTGTATCTGGACGAATTGTGGGAAATGATGGTGGGGAAAGCTGTGCTCTGAAAGATGGAGGTCCATCAAATGTGAAAGTTGAGTTATTGTCTCCCACAGGTGGTGTTGTGTCCTCTGCATTATCAACACCCAGAGGAACATACTCCTTCTCAAACGCTATACCCGGTATGGTTAACCTAAAGTTGTTTGGTTGTTTTTTTAGTGTGCACATACTTAGATGAGAAAATACAAATAATCTGTATATTTAGATTAAACAACTGCATATTCTGATGCTACTTTTTGGATAGGTATGATTATGACATTTTGTTTATGATAGATTGTTTCTGTGTGTGCTTAACATGCTATTATTCTGTTACAAATCTGAATGTACCAATTGATCTTCATCAGGGAAGTACAAATTACGTGCATCACGTCATGACTTGAATGTTCAAGTTAGAGGATCGGCCGAGGTGCGTTTTGAGTCGCTCATGTTCTTTTTGAGTACCATTGTTTCTTTCGGTGTAATCTCATCGACTTTGTTTACCATGTCTACTTCCTGAATTACTGTACATCCATTTGGAATAAGTACCGCTGATTGAATAATCACTTGAATCTACCATGTTGGTTCTCATTGCAGATTGATTTGGGTTTCGAAAATAGAATATTGGAGGACTTCTTCTTT</genome_strand>
        <mrna_strand>TGAGCAGCGCGAGATCTGTTTGTGCTAATCACTAAGGGACGTCAATACTCTCTCTTGCCGGCAATGGCATCCAGCTACTTCTATGTATGCACAATCATATCAATTATTCTCTACGTTTCCGCCACTGCCGCTGCTGATTCAATTCAAGGATGTGGGGGGTTTGTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTTCGGAACTGATCAAGTCAAGGAAGTCAAGCGATCCGAAATTGGATTATTCTAATATCATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTCGCACATTGGATGGCTTGGTGAAGGAAAGAACACACTGTGCCCCTAATGGTTATTACTTCATTCCAGTGTATGATAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCTTTCTTGATCAAAGTCAATGGACCAGAGGGGTGGTCATGGGATCCTGAACAA......................................................................................................................................................GTACCTGTTTCAATTGATCATACTGGCTGCAATGGCAATGAAGATATAAATTTTCGCTTCACCGG..........................................................................................................................................................................................................GTTCACTGTATCTGGACGAATTGTGGGAAATGATGGTGGGGAAAGCTGTGCTCTGAAAGATGGAGGTCCATCAAATGTGAAAGTTGAGTTATTGTCTCCCACAGGTGGTGTTGTGTCCTCTGCATTATCAACACCCAGAGGAACATACTCCTTCTCAAACGCTATACCCG..............................................................................................................................................................................................................................GGAAGTACAAATTACGTGCATCACGTCATGACTTGAATGTTCAAGTTAGAGGATCGGCCGAG.......................................................................................................................................................................ATTGATTTGGGGTTCGAAAATAG-ATATTGGAGGACTTCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317140" ref_strand="+" ref_description="SGN-E317140 [cTOA-27-J22]">
      <seq>aacccctgaagctcaactgagcagcgcgagatctgtttgtgctaatcactaagggacgtcaatactctctcttgccggcaatggcatccagctacttctatgtatgcacaatcatatcaattattctctacgtttccgccactgccgctgctgattcaattcaaggatgtggggggtttgttgaggcaagttcggaactgatcaagtcaaggaagtcaagcgatccgaaattggattattctaatatcattgttgagcttcgcacattggatggcttggtgaaggaaagaacacactgtgcccctaatggttattacttcattccagtgtatgataagggttctttcttgatcaaagtcaatggaccagaggggtggtcatgggatcctgaacaagtacctgtttcaattgatcatactggctgcaatggcaatgaagatataaattttcgcttcaccgggttcactgtatctggacgaattgtgggaaatgatggtggggaaagctgtgctctgaaagatggaggtccatcaaatgtgaaagttgagttattgtctcccacaggtggtgttgtgtcctctgcattatcaacacccagaggaacatactccttctcaaacgctatacccgggaagtacaaattacgtgcatcacgtcatgacttgaatgttcaagttagaagatcggccgagattgatttgggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34304" stop="26513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34004" g_stop="33820" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33819" i_stop="33271" i_length="549">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33270" g_stop="33205" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="251" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33204" i_stop="32137" i_length="1068">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32136" g_stop="32050" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="338" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32049" i_stop="27748" i_length="4302">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27747" g_stop="27691" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="395" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27690" i_stop="27541" i_length="150">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27540" g_stop="27476" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="460" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27475" i_stop="27274" i_length="202">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27273" g_stop="27104" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="630" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27103" i_stop="26882" i_length="222">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26881" g_stop="26820" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="692" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="26819" i_stop="26653" i_length="167">
            <donor d_prob="0.712" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="26652" g_stop="26639" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="706" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E317140" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34004" e_stop="33820"/>
          <exon e_start="33270" e_stop="33205"/>
          <exon e_start="32136" e_stop="32050"/>
          <exon e_start="27747" e_stop="27691"/>
          <exon e_start="27540" e_stop="27476"/>
          <exon e_start="27273" e_stop="27104"/>
          <exon e_start="26881" e_stop="26820"/>
          <exon e_start="26652" e_stop="26639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCCTGAAGCTCAACTGAGCAGCGCGAGATCTGTTTGTGCTAATCACTAAGGGACGTCAATACTCTCTCTTGCCGGCAATGGCATCCAGCTACTTCTATGTATGCACAATCATATCAATTATTCTCTACGTTTCCGCCACTGCCGCTGCTGATTCAATTCAAGGATGTGGGGGGTTTGTTGAGGTGATTTCAACTAATTTCCTTTTGATTTTTTGCTTGATTTTTGATTTTTCGAATGAAAAAAATTCAGTCTTTGAAGCCTGTTGAGCTAGTTTTTGTAGAAGGGGTTATTGGGTATCGGAAATTAGTTGATTTCGAATCAGAGAATGCAAAATCGTTTTTAGTTTTAAAGATTCTGAGTGGTTCTCTTGTATTTCTTTAATGTCGATTGGTTTTAGTAGATGAAGAGATTGACACTTACATTGTATACTGGGTATCTGATATTAGTTGATTTTGAATCAGAAAATGCAAACTCGTTTTTAGGTTTGAAAATCTGAGTGTTTTTTTAGTATTTTGTTGATGTCCATTGATTTTAGTTGGTGAAGAGTTTGATACTTACACTGTATACTGGGTATCTGATATTAGTTGATTTGAAATCAGAGAATGCAATATTGTTTTAGGTTTTAAAGATTCTGAGCTGTTTTTAGTATTTCCTTAATGTCCATTGGTTTTAGTAGGTGAAGAGTTTGATACTGATCTAGGTTATTTCTATTTTTCGTTTTTTTGCTGTAGGCAAGTTCGGAACTGATCAAGTCAAGGAAGTCAAGCGATCCGAAATTGGATTATTCTAATATCATTGTATGTGGCAACTACTGATTAATTGATAAGCATTTATTGTTCTCCTTTATTTTACTCTCTCACCTTATGGGTACCTGATAGTATCAGTCAACTAAACATTGATCCTGGACTAGATGAGGTCTGCTAGATGAATCATGTATATTCACTTTGTTGGTACTTGGTACTGACATAAAAAAAAAAGGAACTTTATCCTCTATGTTGGATGAATAGCCTGTAAAGCTCGGTTTTGCTTTTCATATTCTGTATCTGTGAAGTAGTGATTTCTCCTTTTTCAAGTTTCTATTCTGATTGGATTCATTATAGATCATTCAAACAAAGAACCATTCAAGTCTGCTTATACTTACGTTCCTCCTTAAGGTGGGGTTACTTTAGAGAAAGCAAATCCTGAAATGCTATCACTGAAACTCAGCTCAATAGAAAATATATAAATCAAAAAAGGCAAATTTTGTATAATATCTCATAATGATGAATTATTTAGTATGTATACATGTTTCATCTTACATTGGATGATGACAGTTAAGAAATTAAAGTCAGGGACTACATTCCAAGAAGTTCATTAGTGCTACAAATTCATAATTCGTAGAGGGTATGATCATACTATTATTCATATATTGAAAAAATTAGTGCTGAGGGAAAAGGAGGTCAATTTTTACCGTCATAAACATAAATTTATTCCTCTTTTTGATAAGCATAAACCATAAATTCTTGACAGTTAGCTCACATTCCTTTCCTTGAATGATTAAGTGTTGTTTTTATCTTAACCATTGTTTGGTTCTATTATATGCTACATTTTGCTTATGTGTGAAAAAAATTTCCCATGGGATATTAGCACCGTGCACCAGGTCCTATGCATTGCAGCCCTAGGTTAAAAAGTGTTGGGATTTTCTAATTTATCTTCTCAAGTTTATAGTGTTTAACAGTTATTTATACACTGTGTTGATGGGTGCTGTAGTATGCGATTATACCTTATATTGTCAGTCGGCCTTTGCCAATTTACACATTACAATGTAATTAACTCCGTAAGGATAACACACTAGATCTTCCAATCATATGTTTCTTCTAATGCAGGTTGAGCTTCGCACATTGGATGGCTTGGTGAAGGAAAGAACACACTGTGCCCCTAATGGTTATTACTTCATTCCAGTGTATGATAAGGTACTTCTTCCTGATGGTACTGAGTTGTACATTTTATTGGTCTGACTTATGTTTTTTTCCTTCTTTCTTGGTAAGCCAACAAACTTATGTTGTCATTAGTGTTTTGAGGTTGGTACTGTACTTTAACCGTCCTTAAATTAGAATATTGGTTTATGCCTCAACCAGATTTCCAAGGGCCTATGTACCACTTAAGGCAACTGAAATCTCTTGAGGAATAAGTTATTTAGCCCAAGATATTTAGAGGTAGTTCGGTTGGTAAACAAGTTGTATGAAGATTCTTATGTCGGGATTATAATAAGAGGGTCAAATAATGACAAATTATTTGGTGGATATACTTTATTGGTAGATGTATGCTTCATTGAACTAAAAGTCGGATGTATGAATAACAAAACACATGTTTTTGATGAAATGTAACATATAGTGTACGGGTATAAATGTGACACAACATGTGTTTTGTGTTACAAGATAATTGAGATGAAGATGAACTTTTTTTTTTCAATTTTAATCTTGAAAGTACTTTGGCAGAAGAGCTTTGAAGAAGGTTATATTTGTCATTTTGGTGTTTATCCTATGTTAAGTGTGATGTAAAAGTATCAATGAAAATAAACCTTGATAAAAAAAGTGTGTTATAAAAGTGATACCACAATAATTAAGTGGAGATTTGCTATTTCTGGAATCAAAAGTTCAACCAAATGCGGGATAAAATAATTCTATGTTTTATCCTAAGATCGTTATTCCTTATCCCTTAAACCAAACAACCCCTTAAAGTATTATTTTTACACGATTGACAACACAAGCATCATATAGAATCTTATCTAATTTAAAGATGTAATAGACCTGACTTTAAAAGGGGGAGATAGACAGGTGTGCCTTGCATGTATATATAGAGTATTTTTACATGGTTTGGTCTAACATCTTTTAATAGATGTTGCATTGTGTGACTGTCTCATCTAAAATTTTAAGTTGGTAGAGAGGTTATGCTTTTATTTGACTTTGTCTTCAATATGCCACTCACTTGCGGACTTTTTTTTCTTCATAGGCTTAACATGTATAAAATATTTTGATAAATGGGTGGCAGTGTGATTTGAACCAGAATTTCTGGTTGCTCTGATACCATGCCAAATTTTTTTGACTGCCTCATCTAAGAACTTCAGTTGTTAGAGAGGATACCCTTCCATTTAACTTAGTAACTTCGTCAATTTACTTAAACAAAATATGGAGAACTAAACCCCCGGCGTACAGAAATCACCTCTGAACCATATGGGGTGGGGTATGGAGGACAATCAGGAACCTATGGTCACAAATAGAAGGAAATATGTATATCAAGGTGGGTAATGGAAACAAAACTGAAGTTTGGAAAGATGGCTGGATAGACCAAACGTCTCTCAGGGACTTTTTTCCAGATTTGTTTCTAATCTGTGAAAACCCTGATGCTAAAGTGAGTGACTGTTGGACAGAATAGGGATGGGGCATATCTATAAGAAGACTACTCAATGACTGGGAGGTCGAGAGGGTGCCAGCGTTATTGGGAGAACTAGCTGGAATGATTATAACCACAACAAAATCCTGTGGAAACATAGCAAGGATGGACTCTTTTCAGTCAACAATGCCTACAAAAGAGGACTACATGGGATGACCGGGGGCCAAAAATATGATTGGAATTACTTTTGGAAGAGTGACATTCCTACAAAAATGAAGTGTTTCACCTGGTTAGTGTTGTTTAACACAAGAAGTTCTACAGAAGAAAGGCAGGCAGTTGGTCCCTAGGTGTTTTTTGTGCAACTTGACAGGGAAACAAATAGCCATCTCTTCCTGCATAGTAATGTAAGTTTACTGCTCAAATTTGGAACCTGTTTCTCAACATCACAAGCATGAACAAGACAATGCCAGAGCATACATTAGATCTGTTGAGCTACTAGATTAGGAGGGGAGATATTCATGTTTAACCAAAAAAAAGAAAAGAACCATATAATTCAGCTTCATATTCTGCATTGAGCAACTCTTGCTTTTAAAACATCTCTGGTTTCTCTCCATGCATATAGACCACCAAATGCAGGTAGGGACAATCTTCCATCACTTCTGTGGCCTGACTGATTCCCATCTCTGTTCCAGTTAGCTAGAGCTTCTTTGATGTTCCTTGGCATAGTCCAACTGATGCCCCTTAAGTTGATGAAAATTTGCCACAACTTCAGTTTCTCTACAATGTAGAAGGAGATGGTAAATTTTCTCGACCTCACATTCACAAGACCAACACTTGGAACAGATCTGCAAACCTCTTCTCACGAGGTTGTGTTGAGTGAGTGCAGCCTGATTGGTTAACAACCAAATGAAACATGCTACCTTGAATAGTATCTTGACTTTCCAAATCATCCTCCAAGGCCATCACCTATATGAGTACCAGGTCTTTGTGAGCTATAAGCTGAGCCAACTTAATATCTACCTTGCTTATCTGAATACCAGAATAGATTATCCTCATTTGTGCTTAAATATTTGCACTGCAGCAGCTCAACTATTCTATTCTAAGTTGCTCGGACTCAGGTGCGGGTGTCCGATACGGGTGCGGCTTCGAAGGATCCTTCCTGATCTAATTTTTTAGATTCAGGAATACGGATCCATGTATGGATGCGGGTGAGTGGATTTGCCTAGAAGTAATTAAAATGTGTAAAAATAGAGTTATAAAACCTAAATTATGGGATATTATGAGTAGAACTCGAGGAGAATCTTGGAATGAGATTAAAGGAAAATGAGTGACGTAGAAATTTCTATATAAAAGGTATTCCATTTTCTTTAATTCACCTTAGCTTTTGTATGTATTACAGAAATCATTAAAACTGCCGAAATTTCCCATGGATTTTGGTCAAGGTACCCAAAATCGGTTGACCAAATTGGACATGGATCCCATATCCACACCCATGTCGTGTCGACACGGGTTCGTCTGTAAAAGTGAAGAGTCCGAGCAACTTATATTCCATTGACCTCCCAATCATTTATACGTCTTCTAAACCTGAGATCTCACCCCTGATTGTCTCTCGTTTCTCTCGTTTCTCTGATAGCCACTTCATAACTAAGCTTTGATTTGGGATTTTTAGATTCCTAATCCCCAAATGTTCTTTTTTTTACTGAGAAATACATTGTAGAGGGCTATATAAGGTGAGTATAGAATACAAGATGCTGAATTAGACAACCACAAATCACTACCTGACCATGGAAATACATTTGGAAGGTCAAGATACCTTACAAAGTTGCCTGCTTCACATGACTGTTAGCACAAAAGGCTGTTTTGGACACATGAAAACTTGATGAAAAGAGGAACCACTCTTTTTTCAAGAATGCTATCTACGTGGGAATGAAGCTAAGATAGAGAACCACTTATTTCTACTCCAAATTGACCTTATATTCAAGGGGCATACCAACAGGTAAAAAATCTACAAGATATGATTCTCTACAAACTCTGCCCAATCATCTATACAACAAGGAACTTCCGTTTTACCCCAAAAGAAAATAAGGGAGCATAGACTACTCCTCAATGGATAAGGAACTCTACTATTTCCCTCTCTCCAAACTACCCACATTATTGCAAATGTTGTCCGACTCAAGATAACCTAGCCAAAATTGGGCATGTGACAACAGATTTACGGAGTATGTTTATAAACAGTTCTTGAACTAGGTTGGGTCATGCCACAGAATATCAGGGATGTTTCTGAGAGTTGGAGTTGCTGGAAAGTGTATAGCACCATCCAGAGAATCTGGCTGATGACACTTGCTACTATTTTTTTGGAATATCTGGAATGCAAGGAATATGAGATGCTTTGATGGAAGTATCAACTAAATCTAGATGTCTTCTGTTTTTGTATAGGTGGGTTTATCCTCAATAAATGTATACCTTCTTGAATTTTGTCAGCTCCCTAGCTCTCTACTAAATATGTACTGGAGTTGATAAGTTATTTTTGCTACTCTACTTTTGTTACTATCATGCATCCACTTGATGCCAACAATGGAACTTTTACTTTGTCAAAAAAAAAAGACAAAGGAAAAGAGAAGTGAGAGAAACTCAAAGTTGTTGGGTTTAAATAACTAGATGTTTATATTCTTAAGAAAGAAAGAGAATCAAAAATATAATTACAACCTATACTATATTTATAAGATCCTAGAATATCCTAGATACAACTATTCTATTAGTCCATTCACAGCCTGTCTTCTTGGTTTATATTTTGCTTCCTTCCTTTGCCATCGGTGTTCTCACTTCTCTTGTTTTCTGAGAAATGAAAGAATTTCTCACATCGCATTGAAATCATTTTGCAGGGTTCTTTCTTGATCAAAGTCAATGGACCAGAGGGGTGGTCATGGGATCCTGAACAAGTTGAGTGTCTTCAATGTTATATTGATGACAATTTTGTCAGCATTTGCACTTTCATTGATTCCAGCTCAATGTCCCCCCCCCCCTTCCCCCCTCCCCCCCCCCTCTCTTTTCTGGCTGGTGTATCTGACCAAAGGAGGATCTTTCTGTAGGTACCTGTTTCAATTGATCATACTGGCTGCAATGGCAATGAAGATATAAATTTTCGCTTCACCGGGTTTGTTCTTATTCTTCTAACATTGAAATTAGTCTTTGGATCCTTTGTTCCATAAATAAAGAACAAAAGAGGGGTAAATTTAAACTTTTACAATGTTTATTTTGTTTGCCACACAGCTATTTATCAATATATTCCATATAATGTGCAGTATGGACTATCCACTTCTCTACATGCTAATTTTCTCGAGTCACTGTTTCTGCAGGTTCACTGTATCTGGACGAATTGTGGGAAATGATGGTGGGGAAAGCTGTGCTCTGAAAGATGGAGGTCCATCAAATGTGAAAGTTGAGTTATTGTCTCCCACAGGTGGTGTTGTGTCCTCTGCATTATCAACACCCAGAGGAACATACTCCTTCTCAAACGCTATACCCGGTATGGTTAACCTAAAGTTGTTTGGTTGTTTTTTTAGTGTGCACATACTTAGATGAGAAAATACAAATAATCTGTATATTTAGATTAAACAACTGCATATTCTGATGCTACTTTTTGGATAGGTATGATTATGACATTTTGTTTATGATAGATTGTTTCTGTGTGTGCTTAACATGCTATTATTCTGTTACAAATCTGAATGTACCAATTGATCTTCATCAGGGAAGTACAAATTACGTGCATCACGTCATGACTTGAATGTTCAAGTTAGAGGATCGGCCGAGGTGCGTTTTGAGTCGCTCATGTTCTTTTTGAGTACCATTGTTTCTTTCGGTGTAATCTCATCGACTTTGTTTACCATGTCTACTTCCTGAATTACTGTACATCCATTTGGAATAAGTACCGCTGATTGAATAATCACTTGAATCTACCATGTTGGTTCTCATTGCAGATTGATTTGGGTTT</genome_strand>
        <mrna_strand>AACCCCTGAAGCTCAACTGAGCAGCGCGAGATCTGTTTGTGCTAATCACTAAGGGACGTCAATACTCTCTCTTGCCGGCAATGGCATCCAGCTACTTCTATGTATGCACAATCATATCAATTATTCTCTACGTTTCCGCCACTGCCGCTGCTGATTCAATTCAAGGATGTGGGGGGTTTGTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTTCGGAACTGATCAAGTCAAGGAAGTCAAGCGATCCGAAATTGGATTATTCTAATATCATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTCGCACATTGGATGGCTTGGTGAAGGAAAGAACACACTGTGCCCCTAATGGTTATTACTTCATTCCAGTGTATGATAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCTTTCTTGATCAAAGTCAATGGACCAGAGGGGTGGTCATGGGATCCTGAACAA......................................................................................................................................................GTACCTGTTTCAATTGATCATACTGGCTGCAATGGCAATGAAGATATAAATTTTCGCTTCACCGG..........................................................................................................................................................................................................GTTCACTGTATCTGGACGAATTGTGGGAAATGATGGTGGGGAAAGCTGTGCTCTGAAAGATGGAGGTCCATCAAATGTGAAAGTTGAGTTATTGTCTCCCACAGGTGGTGTTGTGTCCTCTGCATTATCAACACCCAGAGGAACATACTCCTTCTCAAACGCTATACCCG..............................................................................................................................................................................................................................GGAAGTACAAATTACGTGCATCACGTCATGACTTGAATGTTCAAGTTAGAAGATCGGCCGAG.......................................................................................................................................................................ATTGATTTGGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337334" ref_strand="+" ref_description="SGN-E337334 [cTOE-18-A12]">
      <seq>tttgtgctaatcactaatggacgtcaatactctctcttgccggcaatggcatccagctacttctatgtatgcacaatcatatcaattattctctacgtttccgccactgccgctgctgattcaattcaaggatgtggggggtttgttgaggcaagttcggaactgatcaagtcaaggaagtcaagcgatccgaaattggattattctaatatcattgttgagcttcgcacattggatggcttggtgaaggaaagaacacactgtgcccctaatggttattacttcattccagtgtatgataagggttctttcttgatcaaagtcaatggaccagaggggtggtcatgggatcctgaacaagtacctgtttcaattgatcatactggctgcaatggcaatgaagatataaattttcgcttcaccgggttcactgtatctggacgaattgtgggaaatgatggtggggaaagctgtgctctgaaagatggaggtccatcaaatgtgaaagttgagttattgtctcccacaggtggtgttgtgtcctctgcattatcaacacccagaggaacatactccttctcaaacgctatacccgggaagtacaaattacgtgcatcacgtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34269" stop="26552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33969" g_stop="33820" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33819" i_stop="33271" i_length="549">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33270" g_stop="33205" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="216" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33204" i_stop="32137" i_length="1068">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32136" g_stop="32050" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="303" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32049" i_stop="27748" i_length="4302">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27747" g_stop="27691" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="360" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27690" i_stop="27541" i_length="150">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27540" g_stop="27476" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="425" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27475" i_stop="27274" i_length="202">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27273" g_stop="27104" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="595" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27103" i_stop="26882" i_length="222">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26881" g_stop="26852" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="625" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E337334" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33969" e_stop="33820"/>
          <exon e_start="33270" e_stop="33205"/>
          <exon e_start="32136" e_stop="32050"/>
          <exon e_start="27747" e_stop="27691"/>
          <exon e_start="27540" e_stop="27476"/>
          <exon e_start="27273" e_stop="27104"/>
          <exon e_start="26881" e_stop="26852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGCTAATCACTAAGGGACGTCAATACTCTCTCTTGCCGGCAATGGCATCCAGCTACTTCTATGTATGCACAATCATATCAATTATTCTCTACGTTTCCGCCACTGCCGCTGCTGATTCAATTCAAGGATGTGGGGGGTTTGTTGAGGTGATTTCAACTAATTTCCTTTTGATTTTTTGCTTGATTTTTGATTTTTCGAATGAAAAAAATTCAGTCTTTGAAGCCTGTTGAGCTAGTTTTTGTAGAAGGGGTTATTGGGTATCGGAAATTAGTTGATTTCGAATCAGAGAATGCAAAATCGTTTTTAGTTTTAAAGATTCTGAGTGGTTCTCTTGTATTTCTTTAATGTCGATTGGTTTTAGTAGATGAAGAGATTGACACTTACATTGTATACTGGGTATCTGATATTAGTTGATTTTGAATCAGAAAATGCAAACTCGTTTTTAGGTTTGAAAATCTGAGTGTTTTTTTAGTATTTTGTTGATGTCCATTGATTTTAGTTGGTGAAGAGTTTGATACTTACACTGTATACTGGGTATCTGATATTAGTTGATTTGAAATCAGAGAATGCAATATTGTTTTAGGTTTTAAAGATTCTGAGCTGTTTTTAGTATTTCCTTAATGTCCATTGGTTTTAGTAGGTGAAGAGTTTGATACTGATCTAGGTTATTTCTATTTTTCGTTTTTTTGCTGTAGGCAAGTTCGGAACTGATCAAGTCAAGGAAGTCAAGCGATCCGAAATTGGATTATTCTAATATCATTGTATGTGGCAACTACTGATTAATTGATAAGCATTTATTGTTCTCCTTTATTTTACTCTCTCACCTTATGGGTACCTGATAGTATCAGTCAACTAAACATTGATCCTGGACTAGATGAGGTCTGCTAGATGAATCATGTATATTCACTTTGTTGGTACTTGGTACTGACATAAAAAAAAAAGGAACTTTATCCTCTATGTTGGATGAATAGCCTGTAAAGCTCGGTTTTGCTTTTCATATTCTGTATCTGTGAAGTAGTGATTTCTCCTTTTTCAAGTTTCTATTCTGATTGGATTCATTATAGATCATTCAAACAAAGAACCATTCAAGTCTGCTTATACTTACGTTCCTCCTTAAGGTGGGGTTACTTTAGAGAAAGCAAATCCTGAAATGCTATCACTGAAACTCAGCTCAATAGAAAATATATAAATCAAAAAAGGCAAATTTTGTATAATATCTCATAATGATGAATTATTTAGTATGTATACATGTTTCATCTTACATTGGATGATGACAGTTAAGAAATTAAAGTCAGGGACTACATTCCAAGAAGTTCATTAGTGCTACAAATTCATAATTCGTAGAGGGTATGATCATACTATTATTCATATATTGAAAAAATTAGTGCTGAGGGAAAAGGAGGTCAATTTTTACCGTCATAAACATAAATTTATTCCTCTTTTTGATAAGCATAAACCATAAATTCTTGACAGTTAGCTCACATTCCTTTCCTTGAATGATTAAGTGTTGTTTTTATCTTAACCATTGTTTGGTTCTATTATATGCTACATTTTGCTTATGTGTGAAAAAAATTTCCCATGGGATATTAGCACCGTGCACCAGGTCCTATGCATTGCAGCCCTAGGTTAAAAAGTGTTGGGATTTTCTAATTTATCTTCTCAAGTTTATAGTGTTTAACAGTTATTTATACACTGTGTTGATGGGTGCTGTAGTATGCGATTATACCTTATATTGTCAGTCGGCCTTTGCCAATTTACACATTACAATGTAATTAACTCCGTAAGGATAACACACTAGATCTTCCAATCATATGTTTCTTCTAATGCAGGTTGAGCTTCGCACATTGGATGGCTTGGTGAAGGAAAGAACACACTGTGCCCCTAATGGTTATTACTTCATTCCAGTGTATGATAAGGTACTTCTTCCTGATGGTACTGAGTTGTACATTTTATTGGTCTGACTTATGTTTTTTTCCTTCTTTCTTGGTAAGCCAACAAACTTATGTTGTCATTAGTGTTTTGAGGTTGGTACTGTACTTTAACCGTCCTTAAATTAGAATATTGGTTTATGCCTCAACCAGATTTCCAAGGGCCTATGTACCACTTAAGGCAACTGAAATCTCTTGAGGAATAAGTTATTTAGCCCAAGATATTTAGAGGTAGTTCGGTTGGTAAACAAGTTGTATGAAGATTCTTATGTCGGGATTATAATAAGAGGGTCAAATAATGACAAATTATTTGGTGGATATACTTTATTGGTAGATGTATGCTTCATTGAACTAAAAGTCGGATGTATGAATAACAAAACACATGTTTTTGATGAAATGTAACATATAGTGTACGGGTATAAATGTGACACAACATGTGTTTTGTGTTACAAGATAATTGAGATGAAGATGAACTTTTTTTTTTCAATTTTAATCTTGAAAGTACTTTGGCAGAAGAGCTTTGAAGAAGGTTATATTTGTCATTTTGGTGTTTATCCTATGTTAAGTGTGATGTAAAAGTATCAATGAAAATAAACCTTGATAAAAAAAGTGTGTTATAAAAGTGATACCACAATAATTAAGTGGAGATTTGCTATTTCTGGAATCAAAAGTTCAACCAAATGCGGGATAAAATAATTCTATGTTTTATCCTAAGATCGTTATTCCTTATCCCTTAAACCAAACAACCCCTTAAAGTATTATTTTTACACGATTGACAACACAAGCATCATATAGAATCTTATCTAATTTAAAGATGTAATAGACCTGACTTTAAAAGGGGGAGATAGACAGGTGTGCCTTGCATGTATATATAGAGTATTTTTACATGGTTTGGTCTAACATCTTTTAATAGATGTTGCATTGTGTGACTGTCTCATCTAAAATTTTAAGTTGGTAGAGAGGTTATGCTTTTATTTGACTTTGTCTTCAATATGCCACTCACTTGCGGACTTTTTTTTCTTCATAGGCTTAACATGTATAAAATATTTTGATAAATGGGTGGCAGTGTGATTTGAACCAGAATTTCTGGTTGCTCTGATACCATGCCAAATTTTTTTGACTGCCTCATCTAAGAACTTCAGTTGTTAGAGAGGATACCCTTCCATTTAACTTAGTAACTTCGTCAATTTACTTAAACAAAATATGGAGAACTAAACCCCCGGCGTACAGAAATCACCTCTGAACCATATGGGGTGGGGTATGGAGGACAATCAGGAACCTATGGTCACAAATAGAAGGAAATATGTATATCAAGGTGGGTAATGGAAACAAAACTGAAGTTTGGAAAGATGGCTGGATAGACCAAACGTCTCTCAGGGACTTTTTTCCAGATTTGTTTCTAATCTGTGAAAACCCTGATGCTAAAGTGAGTGACTGTTGGACAGAATAGGGATGGGGCATATCTATAAGAAGACTACTCAATGACTGGGAGGTCGAGAGGGTGCCAGCGTTATTGGGAGAACTAGCTGGAATGATTATAACCACAACAAAATCCTGTGGAAACATAGCAAGGATGGACTCTTTTCAGTCAACAATGCCTACAAAAGAGGACTACATGGGATGACCGGGGGCCAAAAATATGATTGGAATTACTTTTGGAAGAGTGACATTCCTACAAAAATGAAGTGTTTCACCTGGTTAGTGTTGTTTAACACAAGAAGTTCTACAGAAGAAAGGCAGGCAGTTGGTCCCTAGGTGTTTTTTGTGCAACTTGACAGGGAAACAAATAGCCATCTCTTCCTGCATAGTAATGTAAGTTTACTGCTCAAATTTGGAACCTGTTTCTCAACATCACAAGCATGAACAAGACAATGCCAGAGCATACATTAGATCTGTTGAGCTACTAGATTAGGAGGGGAGATATTCATGTTTAACCAAAAAAAAGAAAAGAACCATATAATTCAGCTTCATATTCTGCATTGAGCAACTCTTGCTTTTAAAACATCTCTGGTTTCTCTCCATGCATATAGACCACCAAATGCAGGTAGGGACAATCTTCCATCACTTCTGTGGCCTGACTGATTCCCATCTCTGTTCCAGTTAGCTAGAGCTTCTTTGATGTTCCTTGGCATAGTCCAACTGATGCCCCTTAAGTTGATGAAAATTTGCCACAACTTCAGTTTCTCTACAATGTAGAAGGAGATGGTAAATTTTCTCGACCTCACATTCACAAGACCAACACTTGGAACAGATCTGCAAACCTCTTCTCACGAGGTTGTGTTGAGTGAGTGCAGCCTGATTGGTTAACAACCAAATGAAACATGCTACCTTGAATAGTATCTTGACTTTCCAAATCATCCTCCAAGGCCATCACCTATATGAGTACCAGGTCTTTGTGAGCTATAAGCTGAGCCAACTTAATATCTACCTTGCTTATCTGAATACCAGAATAGATTATCCTCATTTGTGCTTAAATATTTGCACTGCAGCAGCTCAACTATTCTATTCTAAGTTGCTCGGACTCAGGTGCGGGTGTCCGATACGGGTGCGGCTTCGAAGGATCCTTCCTGATCTAATTTTTTAGATTCAGGAATACGGATCCATGTATGGATGCGGGTGAGTGGATTTGCCTAGAAGTAATTAAAATGTGTAAAAATAGAGTTATAAAACCTAAATTATGGGATATTATGAGTAGAACTCGAGGAGAATCTTGGAATGAGATTAAAGGAAAATGAGTGACGTAGAAATTTCTATATAAAAGGTATTCCATTTTCTTTAATTCACCTTAGCTTTTGTATGTATTACAGAAATCATTAAAACTGCCGAAATTTCCCATGGATTTTGGTCAAGGTACCCAAAATCGGTTGACCAAATTGGACATGGATCCCATATCCACACCCATGTCGTGTCGACACGGGTTCGTCTGTAAAAGTGAAGAGTCCGAGCAACTTATATTCCATTGACCTCCCAATCATTTATACGTCTTCTAAACCTGAGATCTCACCCCTGATTGTCTCTCGTTTCTCTCGTTTCTCTGATAGCCACTTCATAACTAAGCTTTGATTTGGGATTTTTAGATTCCTAATCCCCAAATGTTCTTTTTTTTACTGAGAAATACATTGTAGAGGGCTATATAAGGTGAGTATAGAATACAAGATGCTGAATTAGACAACCACAAATCACTACCTGACCATGGAAATACATTTGGAAGGTCAAGATACCTTACAAAGTTGCCTGCTTCACATGACTGTTAGCACAAAAGGCTGTTTTGGACACATGAAAACTTGATGAAAAGAGGAACCACTCTTTTTTCAAGAATGCTATCTACGTGGGAATGAAGCTAAGATAGAGAACCACTTATTTCTACTCCAAATTGACCTTATATTCAAGGGGCATACCAACAGGTAAAAAATCTACAAGATATGATTCTCTACAAACTCTGCCCAATCATCTATACAACAAGGAACTTCCGTTTTACCCCAAAAGAAAATAAGGGAGCATAGACTACTCCTCAATGGATAAGGAACTCTACTATTTCCCTCTCTCCAAACTACCCACATTATTGCAAATGTTGTCCGACTCAAGATAACCTAGCCAAAATTGGGCATGTGACAACAGATTTACGGAGTATGTTTATAAACAGTTCTTGAACTAGGTTGGGTCATGCCACAGAATATCAGGGATGTTTCTGAGAGTTGGAGTTGCTGGAAAGTGTATAGCACCATCCAGAGAATCTGGCTGATGACACTTGCTACTATTTTTTTGGAATATCTGGAATGCAAGGAATATGAGATGCTTTGATGGAAGTATCAACTAAATCTAGATGTCTTCTGTTTTTGTATAGGTGGGTTTATCCTCAATAAATGTATACCTTCTTGAATTTTGTCAGCTCCCTAGCTCTCTACTAAATATGTACTGGAGTTGATAAGTTATTTTTGCTACTCTACTTTTGTTACTATCATGCATCCACTTGATGCCAACAATGGAACTTTTACTTTGTCAAAAAAAAAAGACAAAGGAAAAGAGAAGTGAGAGAAACTCAAAGTTGTTGGGTTTAAATAACTAGATGTTTATATTCTTAAGAAAGAAAGAGAATCAAAAATATAATTACAACCTATACTATATTTATAAGATCCTAGAATATCCTAGATACAACTATTCTATTAGTCCATTCACAGCCTGTCTTCTTGGTTTATATTTTGCTTCCTTCCTTTGCCATCGGTGTTCTCACTTCTCTTGTTTTCTGAGAAATGAAAGAATTTCTCACATCGCATTGAAATCATTTTGCAGGGTTCTTTCTTGATCAAAGTCAATGGACCAGAGGGGTGGTCATGGGATCCTGAACAAGTTGAGTGTCTTCAATGTTATATTGATGACAATTTTGTCAGCATTTGCACTTTCATTGATTCCAGCTCAATGTCCCCCCCCCCCTTCCCCCCTCCCCCCCCCCTCTCTTTTCTGGCTGGTGTATCTGACCAAAGGAGGATCTTTCTGTAGGTACCTGTTTCAATTGATCATACTGGCTGCAATGGCAATGAAGATATAAATTTTCGCTTCACCGGGTTTGTTCTTATTCTTCTAACATTGAAATTAGTCTTTGGATCCTTTGTTCCATAAATAAAGAACAAAAGAGGGGTAAATTTAAACTTTTACAATGTTTATTTTGTTTGCCACACAGCTATTTATCAATATATTCCATATAATGTGCAGTATGGACTATCCACTTCTCTACATGCTAATTTTCTCGAGTCACTGTTTCTGCAGGTTCACTGTATCTGGACGAATTGTGGGAAATGATGGTGGGGAAAGCTGTGCTCTGAAAGATGGAGGTCCATCAAATGTGAAAGTTGAGTTATTGTCTCCCACAGGTGGTGTTGTGTCCTCTGCATTATCAACACCCAGAGGAACATACTCCTTCTCAAACGCTATACCCGGTATGGTTAACCTAAAGTTGTTTGGTTGTTTTTTTAGTGTGCACATACTTAGATGAGAAAATACAAATAATCTGTATATTTAGATTAAACAACTGCATATTCTGATGCTACTTTTTGGATAGGTATGATTATGACATTTTGTTTATGATAGATTGTTTCTGTGTGTGCTTAACATGCTATTATTCTGTTACAAATCTGAATGTACCAATTGATCTTCATCAGGGAAGTACAAATTACGTGCATCACGTCATG</genome_strand>
        <mrna_strand>TTTGTGCTAATCACTAATGGACGTCAATACTCTCTCTTGCCGGCAATGGCATCCAGCTACTTCTATGTATGCACAATCATATCAATTATTCTCTACGTTTCCGCCACTGCCGCTGCTGATTCAATTCAAGGATGTGGGGGGTTTGTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTTCGGAACTGATCAAGTCAAGGAAGTCAAGCGATCCGAAATTGGATTATTCTAATATCATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTCGCACATTGGATGGCTTGGTGAAGGAAAGAACACACTGTGCCCCTAATGGTTATTACTTCATTCCAGTGTATGATAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCTTTCTTGATCAAAGTCAATGGACCAGAGGGGTGGTCATGGGATCCTGAACAA......................................................................................................................................................GTACCTGTTTCAATTGATCATACTGGCTGCAATGGCAATGAAGATATAAATTTTCGCTTCACCGG..........................................................................................................................................................................................................GTTCACTGTATCTGGACGAATTGTGGGAAATGATGGTGGGGAAAGCTGTGCTCTGAAAGATGGAGGTCCATCAAATGTGAAAGTTGAGTTATTGTCTCCCACAGGTGGTGTTGTGTCCTCTGCATTATCAACACCCAGAGGAACATACTCCTTCTCAAACGCTATACCCG..............................................................................................................................................................................................................................GGAAGTACAAATTACGTGCATCACGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365398" ref_strand="+" ref_description="SGN-E365398 [cLPT-2-E19]">
      <seq>aacccctgaagctcaactgagcagcgcgagatctgtttgtgctaatcactaagggacttgtatactctctcttgccggcaatggcatccagctacttctatgtatgcacaatcatatcaattattctctacgtttccgccactgccgctgctgattcaattcaaggatgtggggggtttgttgaggcaagttcggaactgatcaagtcaaggaagtcaagcgatccgaaattggattattctaatatcattgttgagcttcgcacattggatggcttggtgaaggaaagaacacactgtgcccctaatggttattacttcattccagtgtatgataagggttctttcttgatcaaagtcaatggaccagaggggtggtcatgggatcctgaacaagtacctgtttcaattgatcatactggctgcaatggcaatgaagatataaattttcgcttcaccgggttcactgtatctggacgaattgtgggaaatgttggtggggagagctgtgctctgaaagatggaggtccatcaaatgtgaaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34304" stop="26888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34004" g_stop="33820" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33819" i_stop="33271" i_length="549">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33270" g_stop="33205" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="251" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33204" i_stop="32137" i_length="1068">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32136" g_stop="32050" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="338" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32049" i_stop="27748" i_length="4302">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27747" g_stop="27691" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="395" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27690" i_stop="27541" i_length="150">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27540" g_stop="27476" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="460" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27475" i_stop="27274" i_length="202">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27273" g_stop="27188" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="546" r_length="86" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E365398" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34004" e_stop="33820"/>
          <exon e_start="33270" e_stop="33205"/>
          <exon e_start="32136" e_stop="32050"/>
          <exon e_start="27747" e_stop="27691"/>
          <exon e_start="27540" e_stop="27476"/>
          <exon e_start="27273" e_stop="27188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCCTGAAGCTCAACTGAGCAGCGCGAGATCTGTTTGTGCTAATCACTAAGGGACGTCAATACTCTCTCTTGCCGGCAATGGCATCCAGCTACTTCTATGTATGCACAATCATATCAATTATTCTCTACGTTTCCGCCACTGCCGCTGCTGATTCAATTCAAGGATGTGGGGGGTTTGTTGAGGTGATTTCAACTAATTTCCTTTTGATTTTTTGCTTGATTTTTGATTTTTCGAATGAAAAAAATTCAGTCTTTGAAGCCTGTTGAGCTAGTTTTTGTAGAAGGGGTTATTGGGTATCGGAAATTAGTTGATTTCGAATCAGAGAATGCAAAATCGTTTTTAGTTTTAAAGATTCTGAGTGGTTCTCTTGTATTTCTTTAATGTCGATTGGTTTTAGTAGATGAAGAGATTGACACTTACATTGTATACTGGGTATCTGATATTAGTTGATTTTGAATCAGAAAATGCAAACTCGTTTTTAGGTTTGAAAATCTGAGTGTTTTTTTAGTATTTTGTTGATGTCCATTGATTTTAGTTGGTGAAGAGTTTGATACTTACACTGTATACTGGGTATCTGATATTAGTTGATTTGAAATCAGAGAATGCAATATTGTTTTAGGTTTTAAAGATTCTGAGCTGTTTTTAGTATTTCCTTAATGTCCATTGGTTTTAGTAGGTGAAGAGTTTGATACTGATCTAGGTTATTTCTATTTTTCGTTTTTTTGCTGTAGGCAAGTTCGGAACTGATCAAGTCAAGGAAGTCAAGCGATCCGAAATTGGATTATTCTAATATCATTGTATGTGGCAACTACTGATTAATTGATAAGCATTTATTGTTCTCCTTTATTTTACTCTCTCACCTTATGGGTACCTGATAGTATCAGTCAACTAAACATTGATCCTGGACTAGATGAGGTCTGCTAGATGAATCATGTATATTCACTTTGTTGGTACTTGGTACTGACATAAAAAAAAAAGGAACTTTATCCTCTATGTTGGATGAATAGCCTGTAAAGCTCGGTTTTGCTTTTCATATTCTGTATCTGTGAAGTAGTGATTTCTCCTTTTTCAAGTTTCTATTCTGATTGGATTCATTATAGATCATTCAAACAAAGAACCATTCAAGTCTGCTTATACTTACGTTCCTCCTTAAGGTGGGGTTACTTTAGAGAAAGCAAATCCTGAAATGCTATCACTGAAACTCAGCTCAATAGAAAATATATAAATCAAAAAAGGCAAATTTTGTATAATATCTCATAATGATGAATTATTTAGTATGTATACATGTTTCATCTTACATTGGATGATGACAGTTAAGAAATTAAAGTCAGGGACTACATTCCAAGAAGTTCATTAGTGCTACAAATTCATAATTCGTAGAGGGTATGATCATACTATTATTCATATATTGAAAAAATTAGTGCTGAGGGAAAAGGAGGTCAATTTTTACCGTCATAAACATAAATTTATTCCTCTTTTTGATAAGCATAAACCATAAATTCTTGACAGTTAGCTCACATTCCTTTCCTTGAATGATTAAGTGTTGTTTTTATCTTAACCATTGTTTGGTTCTATTATATGCTACATTTTGCTTATGTGTGAAAAAAATTTCCCATGGGATATTAGCACCGTGCACCAGGTCCTATGCATTGCAGCCCTAGGTTAAAAAGTGTTGGGATTTTCTAATTTATCTTCTCAAGTTTATAGTGTTTAACAGTTATTTATACACTGTGTTGATGGGTGCTGTAGTATGCGATTATACCTTATATTGTCAGTCGGCCTTTGCCAATTTACACATTACAATGTAATTAACTCCGTAAGGATAACACACTAGATCTTCCAATCATATGTTTCTTCTAATGCAGGTTGAGCTTCGCACATTGGATGGCTTGGTGAAGGAAAGAACACACTGTGCCCCTAATGGTTATTACTTCATTCCAGTGTATGATAAGGTACTTCTTCCTGATGGTACTGAGTTGTACATTTTATTGGTCTGACTTATGTTTTTTTCCTTCTTTCTTGGTAAGCCAACAAACTTATGTTGTCATTAGTGTTTTGAGGTTGGTACTGTACTTTAACCGTCCTTAAATTAGAATATTGGTTTATGCCTCAACCAGATTTCCAAGGGCCTATGTACCACTTAAGGCAACTGAAATCTCTTGAGGAATAAGTTATTTAGCCCAAGATATTTAGAGGTAGTTCGGTTGGTAAACAAGTTGTATGAAGATTCTTATGTCGGGATTATAATAAGAGGGTCAAATAATGACAAATTATTTGGTGGATATACTTTATTGGTAGATGTATGCTTCATTGAACTAAAAGTCGGATGTATGAATAACAAAACACATGTTTTTGATGAAATGTAACATATAGTGTACGGGTATAAATGTGACACAACATGTGTTTTGTGTTACAAGATAATTGAGATGAAGATGAACTTTTTTTTTTCAATTTTAATCTTGAAAGTACTTTGGCAGAAGAGCTTTGAAGAAGGTTATATTTGTCATTTTGGTGTTTATCCTATGTTAAGTGTGATGTAAAAGTATCAATGAAAATAAACCTTGATAAAAAAAGTGTGTTATAAAAGTGATACCACAATAATTAAGTGGAGATTTGCTATTTCTGGAATCAAAAGTTCAACCAAATGCGGGATAAAATAATTCTATGTTTTATCCTAAGATCGTTATTCCTTATCCCTTAAACCAAACAACCCCTTAAAGTATTATTTTTACACGATTGACAACACAAGCATCATATAGAATCTTATCTAATTTAAAGATGTAATAGACCTGACTTTAAAAGGGGGAGATAGACAGGTGTGCCTTGCATGTATATATAGAGTATTTTTACATGGTTTGGTCTAACATCTTTTAATAGATGTTGCATTGTGTGACTGTCTCATCTAAAATTTTAAGTTGGTAGAGAGGTTATGCTTTTATTTGACTTTGTCTTCAATATGCCACTCACTTGCGGACTTTTTTTTCTTCATAGGCTTAACATGTATAAAATATTTTGATAAATGGGTGGCAGTGTGATTTGAACCAGAATTTCTGGTTGCTCTGATACCATGCCAAATTTTTTTGACTGCCTCATCTAAGAACTTCAGTTGTTAGAGAGGATACCCTTCCATTTAACTTAGTAACTTCGTCAATTTACTTAAACAAAATATGGAGAACTAAACCCCCGGCGTACAGAAATCACCTCTGAACCATATGGGGTGGGGTATGGAGGACAATCAGGAACCTATGGTCACAAATAGAAGGAAATATGTATATCAAGGTGGGTAATGGAAACAAAACTGAAGTTTGGAAAGATGGCTGGATAGACCAAACGTCTCTCAGGGACTTTTTTCCAGATTTGTTTCTAATCTGTGAAAACCCTGATGCTAAAGTGAGTGACTGTTGGACAGAATAGGGATGGGGCATATCTATAAGAAGACTACTCAATGACTGGGAGGTCGAGAGGGTGCCAGCGTTATTGGGAGAACTAGCTGGAATGATTATAACCACAACAAAATCCTGTGGAAACATAGCAAGGATGGACTCTTTTCAGTCAACAATGCCTACAAAAGAGGACTACATGGGATGACCGGGGGCCAAAAATATGATTGGAATTACTTTTGGAAGAGTGACATTCCTACAAAAATGAAGTGTTTCACCTGGTTAGTGTTGTTTAACACAAGAAGTTCTACAGAAGAAAGGCAGGCAGTTGGTCCCTAGGTGTTTTTTGTGCAACTTGACAGGGAAACAAATAGCCATCTCTTCCTGCATAGTAATGTAAGTTTACTGCTCAAATTTGGAACCTGTTTCTCAACATCACAAGCATGAACAAGACAATGCCAGAGCATACATTAGATCTGTTGAGCTACTAGATTAGGAGGGGAGATATTCATGTTTAACCAAAAAAAAGAAAAGAACCATATAATTCAGCTTCATATTCTGCATTGAGCAACTCTTGCTTTTAAAACATCTCTGGTTTCTCTCCATGCATATAGACCACCAAATGCAGGTAGGGACAATCTTCCATCACTTCTGTGGCCTGACTGATTCCCATCTCTGTTCCAGTTAGCTAGAGCTTCTTTGATGTTCCTTGGCATAGTCCAACTGATGCCCCTTAAGTTGATGAAAATTTGCCACAACTTCAGTTTCTCTACAATGTAGAAGGAGATGGTAAATTTTCTCGACCTCACATTCACAAGACCAACACTTGGAACAGATCTGCAAACCTCTTCTCACGAGGTTGTGTTGAGTGAGTGCAGCCTGATTGGTTAACAACCAAATGAAACATGCTACCTTGAATAGTATCTTGACTTTCCAAATCATCCTCCAAGGCCATCACCTATATGAGTACCAGGTCTTTGTGAGCTATAAGCTGAGCCAACTTAATATCTACCTTGCTTATCTGAATACCAGAATAGATTATCCTCATTTGTGCTTAAATATTTGCACTGCAGCAGCTCAACTATTCTATTCTAAGTTGCTCGGACTCAGGTGCGGGTGTCCGATACGGGTGCGGCTTCGAAGGATCCTTCCTGATCTAATTTTTTAGATTCAGGAATACGGATCCATGTATGGATGCGGGTGAGTGGATTTGCCTAGAAGTAATTAAAATGTGTAAAAATAGAGTTATAAAACCTAAATTATGGGATATTATGAGTAGAACTCGAGGAGAATCTTGGAATGAGATTAAAGGAAAATGAGTGACGTAGAAATTTCTATATAAAAGGTATTCCATTTTCTTTAATTCACCTTAGCTTTTGTATGTATTACAGAAATCATTAAAACTGCCGAAATTTCCCATGGATTTTGGTCAAGGTACCCAAAATCGGTTGACCAAATTGGACATGGATCCCATATCCACACCCATGTCGTGTCGACACGGGTTCGTCTGTAAAAGTGAAGAGTCCGAGCAACTTATATTCCATTGACCTCCCAATCATTTATACGTCTTCTAAACCTGAGATCTCACCCCTGATTGTCTCTCGTTTCTCTCGTTTCTCTGATAGCCACTTCATAACTAAGCTTTGATTTGGGATTTTTAGATTCCTAATCCCCAAATGTTCTTTTTTTTACTGAGAAATACATTGTAGAGGGCTATATAAGGTGAGTATAGAATACAAGATGCTGAATTAGACAACCACAAATCACTACCTGACCATGGAAATACATTTGGAAGGTCAAGATACCTTACAAAGTTGCCTGCTTCACATGACTGTTAGCACAAAAGGCTGTTTTGGACACATGAAAACTTGATGAAAAGAGGAACCACTCTTTTTTCAAGAATGCTATCTACGTGGGAATGAAGCTAAGATAGAGAACCACTTATTTCTACTCCAAATTGACCTTATATTCAAGGGGCATACCAACAGGTAAAAAATCTACAAGATATGATTCTCTACAAACTCTGCCCAATCATCTATACAACAAGGAACTTCCGTTTTACCCCAAAAGAAAATAAGGGAGCATAGACTACTCCTCAATGGATAAGGAACTCTACTATTTCCCTCTCTCCAAACTACCCACATTATTGCAAATGTTGTCCGACTCAAGATAACCTAGCCAAAATTGGGCATGTGACAACAGATTTACGGAGTATGTTTATAAACAGTTCTTGAACTAGGTTGGGTCATGCCACAGAATATCAGGGATGTTTCTGAGAGTTGGAGTTGCTGGAAAGTGTATAGCACCATCCAGAGAATCTGGCTGATGACACTTGCTACTATTTTTTTGGAATATCTGGAATGCAAGGAATATGAGATGCTTTGATGGAAGTATCAACTAAATCTAGATGTCTTCTGTTTTTGTATAGGTGGGTTTATCCTCAATAAATGTATACCTTCTTGAATTTTGTCAGCTCCCTAGCTCTCTACTAAATATGTACTGGAGTTGATAAGTTATTTTTGCTACTCTACTTTTGTTACTATCATGCATCCACTTGATGCCAACAATGGAACTTTTACTTTGTCAAAAAAAAAAGACAAAGGAAAAGAGAAGTGAGAGAAACTCAAAGTTGTTGGGTTTAAATAACTAGATGTTTATATTCTTAAGAAAGAAAGAGAATCAAAAATATAATTACAACCTATACTATATTTATAAGATCCTAGAATATCCTAGATACAACTATTCTATTAGTCCATTCACAGCCTGTCTTCTTGGTTTATATTTTGCTTCCTTCCTTTGCCATCGGTGTTCTCACTTCTCTTGTTTTCTGAGAAATGAAAGAATTTCTCACATCGCATTGAAATCATTTTGCAGGGTTCTTTCTTGATCAAAGTCAATGGACCAGAGGGGTGGTCATGGGATCCTGAACAAGTTGAGTGTCTTCAATGTTATATTGATGACAATTTTGTCAGCATTTGCACTTTCATTGATTCCAGCTCAATGTCCCCCCCCCCCTTCCCCCCTCCCCCCCCCCTCTCTTTTCTGGCTGGTGTATCTGACCAAAGGAGGATCTTTCTGTAGGTACCTGTTTCAATTGATCATACTGGCTGCAATGGCAATGAAGATATAAATTTTCGCTTCACCGGGTTTGTTCTTATTCTTCTAACATTGAAATTAGTCTTTGGATCCTTTGTTCCATAAATAAAGAACAAAAGAGGGGTAAATTTAAACTTTTACAATGTTTATTTTGTTTGCCACACAGCTATTTATCAATATATTCCATATAATGTGCAGTATGGACTATCCACTTCTCTACATGCTAATTTTCTCGAGTCACTGTTTCTGCAGGTTCACTGTATCTGGACGAATTGTGGGAAATGATGGTGGGGAAAGCTGTGCTCTGAAAGATGGAGGTCCATCAAATGTGAAAGTTG</genome_strand>
        <mrna_strand>AACCCCTGAAGCTCAACTGAGCAGCGCGAGATCTGTTTGTGCTAATCACTAAGGGACTTGTATACTCTCTCTTGCCGGCAATGGCATCCAGCTACTTCTATGTATGCACAATCATATCAATTATTCTCTACGTTTCCGCCACTGCCGCTGCTGATTCAATTCAAGGATGTGGGGGGTTTGTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTTCGGAACTGATCAAGTCAAGGAAGTCAAGCGATCCGAAATTGGATTATTCTAATATCATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTCGCACATTGGATGGCTTGGTGAAGGAAAGAACACACTGTGCCCCTAATGGTTATTACTTCATTCCAGTGTATGATAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCTTTCTTGATCAAAGTCAATGGACCAGAGGGGTGGTCATGGGATCCTGAACAA......................................................................................................................................................GTACCTGTTTCAATTGATCATACTGGCTGCAATGGCAATGAAGATATAAATTTTCGCTTCACCGG..........................................................................................................................................................................................................GTTCACTGTATCTGGACGAATTGTGGGAAATGTTGGTGGGGAGAGCTGTGCTCTGAAAGATGGAGGTCCATCAAATGTGAAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473312" ref_strand="+" ref_description="SGN-E473312 [cSTB-31-N14]">
      <seq>ccaaaacccttgcgcatcacagcagagagaaccaacccctgaagctcaactgagcagcgcaagatctgtttgtgctaatcactaagggacttctatactctctcttgccggcaatggcatccagctacttctatgtatgcacaatcatatcgattattctctatgtttccgccactgccgctgctgattcaattcaaggatgtgggggatttgtcgaggcgagttcggaactgatcaagtcaaggaagtcaagtgatccgaaattggattattcaaatatcattgttgagcttcgcacattggatggcttggtgaaggaaagaacacattgtgcccctaatggttattacttcattccagtgtatgataagggttctttcttgatcaaagtcaatggcccagagggatggtcatgggatcctgaacaagtacctgtttcaattgatcatactggctgcaatggcaatgaagatataaattttcgcttcaccgggttcactgtatctgggcgaattgtgggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34336" stop="26942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34037" g_stop="33820" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33819" i_stop="33271" i_length="549">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33270" g_stop="33205" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="284" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33204" i_stop="32137" i_length="1068">
            <donor d_prob="0.813" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32136" g_stop="32050" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="371" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32049" i_stop="27748" i_length="4302">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27747" g_stop="27691" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="428" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27690" i_stop="27541" i_length="150">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27540" g_stop="27476" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="493" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27475" i_stop="27274" i_length="202">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27273" g_stop="27242" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="525" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E473312" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34037" e_stop="33820"/>
          <exon e_start="33270" e_stop="33205"/>
          <exon e_start="32136" e_stop="32050"/>
          <exon e_start="27747" e_stop="27691"/>
          <exon e_start="27540" e_stop="27476"/>
          <exon e_start="27273" e_stop="27242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACCCTTGCGCATCACAGCAGAGAGAACCAACCCCTGAAGCTCAACTGAGCAGCGCGAGATCTGTTTGTGCTAATCACTAAGGGACGTCAATACTCTCTCTTGCCGGCAATGGCATCCAGCTACTTCTATGTATGCACAATCATATCAATTATTCTCTACGTTTCCGCCACTGCCGCTGCTGATTCAATTCAAGGATGTGGGGGGTTTGTTGAGGTGATTTCAACTAATTTCCTTTTGATTTTTTGCTTGATTTTTGATTTTTCGAATGAAAAAAATTCAGTCTTTGAAGCCTGTTGAGCTAGTTTTTGTAGAAGGGGTTATTGGGTATCGGAAATTAGTTGATTTCGAATCAGAGAATGCAAAATCGTTTTTAGTTTTAAAGATTCTGAGTGGTTCTCTTGTATTTCTTTAATGTCGATTGGTTTTAGTAGATGAAGAGATTGACACTTACATTGTATACTGGGTATCTGATATTAGTTGATTTTGAATCAGAAAATGCAAACTCGTTTTTAGGTTTGAAAATCTGAGTGTTTTTTTAGTATTTTGTTGATGTCCATTGATTTTAGTTGGTGAAGAGTTTGATACTTACACTGTATACTGGGTATCTGATATTAGTTGATTTGAAATCAGAGAATGCAATATTGTTTTAGGTTTTAAAGATTCTGAGCTGTTTTTAGTATTTCCTTAATGTCCATTGGTTTTAGTAGGTGAAGAGTTTGATACTGATCTAGGTTATTTCTATTTTTCGTTTTTTTGCTGTAGGCAAGTTCGGAACTGATCAAGTCAAGGAAGTCAAGCGATCCGAAATTGGATTATTCTAATATCATTGTATGTGGCAACTACTGATTAATTGATAAGCATTTATTGTTCTCCTTTATTTTACTCTCTCACCTTATGGGTACCTGATAGTATCAGTCAACTAAACATTGATCCTGGACTAGATGAGGTCTGCTAGATGAATCATGTATATTCACTTTGTTGGTACTTGGTACTGACATAAAAAAAAAAGGAACTTTATCCTCTATGTTGGATGAATAGCCTGTAAAGCTCGGTTTTGCTTTTCATATTCTGTATCTGTGAAGTAGTGATTTCTCCTTTTTCAAGTTTCTATTCTGATTGGATTCATTATAGATCATTCAAACAAAGAACCATTCAAGTCTGCTTATACTTACGTTCCTCCTTAAGGTGGGGTTACTTTAGAGAAAGCAAATCCTGAAATGCTATCACTGAAACTCAGCTCAATAGAAAATATATAAATCAAAAAAGGCAAATTTTGTATAATATCTCATAATGATGAATTATTTAGTATGTATACATGTTTCATCTTACATTGGATGATGACAGTTAAGAAATTAAAGTCAGGGACTACATTCCAAGAAGTTCATTAGTGCTACAAATTCATAATTCGTAGAGGGTATGATCATACTATTATTCATATATTGAAAAAATTAGTGCTGAGGGAAAAGGAGGTCAATTTTTACCGTCATAAACATAAATTTATTCCTCTTTTTGATAAGCATAAACCATAAATTCTTGACAGTTAGCTCACATTCCTTTCCTTGAATGATTAAGTGTTGTTTTTATCTTAACCATTGTTTGGTTCTATTATATGCTACATTTTGCTTATGTGTGAAAAAAATTTCCCATGGGATATTAGCACCGTGCACCAGGTCCTATGCATTGCAGCCCTAGGTTAAAAAGTGTTGGGATTTTCTAATTTATCTTCTCAAGTTTATAGTGTTTAACAGTTATTTATACACTGTGTTGATGGGTGCTGTAGTATGCGATTATACCTTATATTGTCAGTCGGCCTTTGCCAATTTACACATTACAATGTAATTAACTCCGTAAGGATAACACACTAGATCTTCCAATCATATGTTTCTTCTAATGCAGGTTGAGCTTCGCACATTGGATGGCTTGGTGAAGGAAAGAACACACTGTGCCCCTAATGGTTATTACTTCATTCCAGTGTATGATAAGGTACTTCTTCCTGATGGTACTGAGTTGTACATTTTATTGGTCTGACTTATGTTTTTTTCCTTCTTTCTTGGTAAGCCAACAAACTTATGTTGTCATTAGTGTTTTGAGGTTGGTACTGTACTTTAACCGTCCTTAAATTAGAATATTGGTTTATGCCTCAACCAGATTTCCAAGGGCCTATGTACCACTTAAGGCAACTGAAATCTCTTGAGGAATAAGTTATTTAGCCCAAGATATTTAGAGGTAGTTCGGTTGGTAAACAAGTTGTATGAAGATTCTTATGTCGGGATTATAATAAGAGGGTCAAATAATGACAAATTATTTGGTGGATATACTTTATTGGTAGATGTATGCTTCATTGAACTAAAAGTCGGATGTATGAATAACAAAACACATGTTTTTGATGAAATGTAACATATAGTGTACGGGTATAAATGTGACACAACATGTGTTTTGTGTTACAAGATAATTGAGATGAAGATGAACTTTTTTTTTTCAATTTTAATCTTGAAAGTACTTTGGCAGAAGAGCTTTGAAGAAGGTTATATTTGTCATTTTGGTGTTTATCCTATGTTAAGTGTGATGTAAAAGTATCAATGAAAATAAACCTTGATAAAAAAAGTGTGTTATAAAAGTGATACCACAATAATTAAGTGGAGATTTGCTATTTCTGGAATCAAAAGTTCAACCAAATGCGGGATAAAATAATTCTATGTTTTATCCTAAGATCGTTATTCCTTATCCCTTAAACCAAACAACCCCTTAAAGTATTATTTTTACACGATTGACAACACAAGCATCATATAGAATCTTATCTAATTTAAAGATGTAATAGACCTGACTTTAAAAGGGGGAGATAGACAGGTGTGCCTTGCATGTATATATAGAGTATTTTTACATGGTTTGGTCTAACATCTTTTAATAGATGTTGCATTGTGTGACTGTCTCATCTAAAATTTTAAGTTGGTAGAGAGGTTATGCTTTTATTTGACTTTGTCTTCAATATGCCACTCACTTGCGGACTTTTTTTTCTTCATAGGCTTAACATGTATAAAATATTTTGATAAATGGGTGGCAGTGTGATTTGAACCAGAATTTCTGGTTGCTCTGATACCATGCCAAATTTTTTTGACTGCCTCATCTAAGAACTTCAGTTGTTAGAGAGGATACCCTTCCATTTAACTTAGTAACTTCGTCAATTTACTTAAACAAAATATGGAGAACTAAACCCCCGGCGTACAGAAATCACCTCTGAACCATATGGGGTGGGGTATGGAGGACAATCAGGAACCTATGGTCACAAATAGAAGGAAATATGTATATCAAGGTGGGTAATGGAAACAAAACTGAAGTTTGGAAAGATGGCTGGATAGACCAAACGTCTCTCAGGGACTTTTTTCCAGATTTGTTTCTAATCTGTGAAAACCCTGATGCTAAAGTGAGTGACTGTTGGACAGAATAGGGATGGGGCATATCTATAAGAAGACTACTCAATGACTGGGAGGTCGAGAGGGTGCCAGCGTTATTGGGAGAACTAGCTGGAATGATTATAACCACAACAAAATCCTGTGGAAACATAGCAAGGATGGACTCTTTTCAGTCAACAATGCCTACAAAAGAGGACTACATGGGATGACCGGGGGCCAAAAATATGATTGGAATTACTTTTGGAAGAGTGACATTCCTACAAAAATGAAGTGTTTCACCTGGTTAGTGTTGTTTAACACAAGAAGTTCTACAGAAGAAAGGCAGGCAGTTGGTCCCTAGGTGTTTTTTGTGCAACTTGACAGGGAAACAAATAGCCATCTCTTCCTGCATAGTAATGTAAGTTTACTGCTCAAATTTGGAACCTGTTTCTCAACATCACAAGCATGAACAAGACAATGCCAGAGCATACATTAGATCTGTTGAGCTACTAGATTAGGAGGGGAGATATTCATGTTTAACCAAAAAAAAGAAAAGAACCATATAATTCAGCTTCATATTCTGCATTGAGCAACTCTTGCTTTTAAAACATCTCTGGTTTCTCTCCATGCATATAGACCACCAAATGCAGGTAGGGACAATCTTCCATCACTTCTGTGGCCTGACTGATTCCCATCTCTGTTCCAGTTAGCTAGAGCTTCTTTGATGTTCCTTGGCATAGTCCAACTGATGCCCCTTAAGTTGATGAAAATTTGCCACAACTTCAGTTTCTCTACAATGTAGAAGGAGATGGTAAATTTTCTCGACCTCACATTCACAAGACCAACACTTGGAACAGATCTGCAAACCTCTTCTCACGAGGTTGTGTTGAGTGAGTGCAGCCTGATTGGTTAACAACCAAATGAAACATGCTACCTTGAATAGTATCTTGACTTTCCAAATCATCCTCCAAGGCCATCACCTATATGAGTACCAGGTCTTTGTGAGCTATAAGCTGAGCCAACTTAATATCTACCTTGCTTATCTGAATACCAGAATAGATTATCCTCATTTGTGCTTAAATATTTGCACTGCAGCAGCTCAACTATTCTATTCTAAGTTGCTCGGACTCAGGTGCGGGTGTCCGATACGGGTGCGGCTTCGAAGGATCCTTCCTGATCTAATTTTTTAGATTCAGGAATACGGATCCATGTATGGATGCGGGTGAGTGGATTTGCCTAGAAGTAATTAAAATGTGTAAAAATAGAGTTATAAAACCTAAATTATGGGATATTATGAGTAGAACTCGAGGAGAATCTTGGAATGAGATTAAAGGAAAATGAGTGACGTAGAAATTTCTATATAAAAGGTATTCCATTTTCTTTAATTCACCTTAGCTTTTGTATGTATTACAGAAATCATTAAAACTGCCGAAATTTCCCATGGATTTTGGTCAAGGTACCCAAAATCGGTTGACCAAATTGGACATGGATCCCATATCCACACCCATGTCGTGTCGACACGGGTTCGTCTGTAAAAGTGAAGAGTCCGAGCAACTTATATTCCATTGACCTCCCAATCATTTATACGTCTTCTAAACCTGAGATCTCACCCCTGATTGTCTCTCGTTTCTCTCGTTTCTCTGATAGCCACTTCATAACTAAGCTTTGATTTGGGATTTTTAGATTCCTAATCCCCAAATGTTCTTTTTTTTACTGAGAAATACATTGTAGAGGGCTATATAAGGTGAGTATAGAATACAAGATGCTGAATTAGACAACCACAAATCACTACCTGACCATGGAAATACATTTGGAAGGTCAAGATACCTTACAAAGTTGCCTGCTTCACATGACTGTTAGCACAAAAGGCTGTTTTGGACACATGAAAACTTGATGAAAAGAGGAACCACTCTTTTTTCAAGAATGCTATCTACGTGGGAATGAAGCTAAGATAGAGAACCACTTATTTCTACTCCAAATTGACCTTATATTCAAGGGGCATACCAACAGGTAAAAAATCTACAAGATATGATTCTCTACAAACTCTGCCCAATCATCTATACAACAAGGAACTTCCGTTTTACCCCAAAAGAAAATAAGGGAGCATAGACTACTCCTCAATGGATAAGGAACTCTACTATTTCCCTCTCTCCAAACTACCCACATTATTGCAAATGTTGTCCGACTCAAGATAACCTAGCCAAAATTGGGCATGTGACAACAGATTTACGGAGTATGTTTATAAACAGTTCTTGAACTAGGTTGGGTCATGCCACAGAATATCAGGGATGTTTCTGAGAGTTGGAGTTGCTGGAAAGTGTATAGCACCATCCAGAGAATCTGGCTGATGACACTTGCTACTATTTTTTTGGAATATCTGGAATGCAAGGAATATGAGATGCTTTGATGGAAGTATCAACTAAATCTAGATGTCTTCTGTTTTTGTATAGGTGGGTTTATCCTCAATAAATGTATACCTTCTTGAATTTTGTCAGCTCCCTAGCTCTCTACTAAATATGTACTGGAGTTGATAAGTTATTTTTGCTACTCTACTTTTGTTACTATCATGCATCCACTTGATGCCAACAATGGAACTTTTACTTTGTCAAAAAAAAAAGACAAAGGAAAAGAGAAGTGAGAGAAACTCAAAGTTGTTGGGTTTAAATAACTAGATGTTTATATTCTTAAGAAAGAAAGAGAATCAAAAATATAATTACAACCTATACTATATTTATAAGATCCTAGAATATCCTAGATACAACTATTCTATTAGTCCATTCACAGCCTGTCTTCTTGGTTTATATTTTGCTTCCTTCCTTTGCCATCGGTGTTCTCACTTCTCTTGTTTTCTGAGAAATGAAAGAATTTCTCACATCGCATTGAAATCATTTTGCAGGGTTCTTTCTTGATCAAAGTCAATGGACCAGAGGGGTGGTCATGGGATCCTGAACAAGTTGAGTGTCTTCAATGTTATATTGATGACAATTTTGTCAGCATTTGCACTTTCATTGATTCCAGCTCAATGTCCCCCCCCCCCTTCCCCCCTCCCCCCCCCCTCTCTTTTCTGGCTGGTGTATCTGACCAAAGGAGGATCTTTCTGTAGGTACCTGTTTCAATTGATCATACTGGCTGCAATGGCAATGAAGATATAAATTTTCGCTTCACCGGGTTTGTTCTTATTCTTCTAACATTGAAATTAGTCTTTGGATCCTTTGTTCCATAAATAAAGAACAAAAGAGGGGTAAATTTAAACTTTTACAATGTTTATTTTGTTTGCCACACAGCTATTTATCAATATATTCCATATAATGTGCAGTATGGACTATCCACTTCTCTACATGCTAATTTTCTCGAGTCACTGTTTCTGCAGGTTCACTGTATCTGGACGAATTGTGGGAAATG</genome_strand>
        <mrna_strand>CCAAAACCCTTGCGCATCACAGCAGAGAGAACCAACCCCTGAAGCTCAACTGAGCAGCGCAAGATCTGTTTGTGCTAATCACTAAGGGACTTCTATACTCTCTCTTGCCGGCAATGGCATCCAGCTACTTCTATGTATGCACAATCATATCGATTATTCTCTATGTTTCCGCCACTGCCGCTGCTGATTCAATTCAAGGATGTGGGGGATTTGTCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGTTCGGAACTGATCAAGTCAAGGAAGTCAAGTGATCCGAAATTGGATTATTCAAATATCATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTCGCACATTGGATGGCTTGGTGAAGGAAAGAACACATTGTGCCCCTAATGGTTATTACTTCATTCCAGTGTATGATAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCTTTCTTGATCAAAGTCAATGGCCCAGAGGGATGGTCATGGGATCCTGAACAA......................................................................................................................................................GTACCTGTTTCAATTGATCATACTGGCTGCAATGGCAATGAAGATATAAATTTTCGCTTCACCGG..........................................................................................................................................................................................................GTTCACTGTATCTGGGCGAATTGTGGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547087" ref_strand="+" ref_description="SGN-E547087 [TUS-70-M15](-)">
      <seq>caaacatgaaccaaggacatgtttcaacagtcgtaaagggtagcttcgggtatttagatcctgaatacttcagaagacaacaattgactgaaaaatcagatgtgtactcatatggtgttgtcctatttgaagtactgtgtgcaaggccagctcttaactcaaatcttccgaaagaacaagttagtcttgcagattgggcattagcttgtcaaaggaaagggaatttagaagatattattgatccacatttgaaaggcaagatcaatcctgaatgcttgaaaaaatttgcagaaacagctgagaaatgcttagctgataatggtataaatcgtccgtccatgggtgatgtgttatggaatcttgaatatgcccttcagctacaagaaaatccagatggtattttatcaacttccgaggcaacgaaacaggttgatcatgacaatgctgatcaacacagtttgatagctatgcatagaagcactttgagccttgaaagtgaaaatgaaaatgaaaatgctgatggtaaaacagcatgatgtcttttcacaganttgtgagtccaacaggagaggtaatagaaanatatatatacaacaactgtacatttcactnatatatattatgtatcacactatatatattttaaaacaaaaatctaagggagcatagctagcgcnacggttgattccctttgtgtcaccatttaagtatttgtaaatttgaataagtcatatttaagccatataatataacaacaaatgtattgtacttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36655" stop="35311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36355" g_stop="35611" g_length="745"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="771" r_length="771" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="772" polyA_stop="783"/>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E547087" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36355" e_stop="35611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACATGAACCAAGGACATGTTTCAACAGTCGTAAAGGGTAGCTTCGGGTATTTAGATCCTGAATACTTCAGAAGACAACAATTGACTGAAAAATCAGATGTGTACTCGTATGGTGTTGTCCTATTTGAAGTACTGTGTGCAAGGCCAGCTCTTAACTCAAATCTTCCGAAAGAACAAGTTAGTCTTGCAGATTGGGCATTAGCTTGTCAAAGGAAAGGGAATTTAGAAGATATTATTGATCCACATTTGAAAGGCAAGATCAATCCTGAATGCTTGAAAAAATTTGCAGAAACAGCTGAGAAATGCTTAGCTGATAATGGTATAAATCGTCCGTCCATGGGTGATGTGTTATGGAATCTTGAATATGCCCTTCAGCTACAAGAAAATCCAGATGGTGTTTTATCAACTTCCGAGGCAACGAAACAGGTTGATCATGACAATGCTGATCAACACAGTTTGATAGCTATGCATAGAAGCACTTTGAGCCTTGAAAGTGAAAATGAAAATGAAAATGCTGATGGTAAAACAG-ATGATGTCTTTTCACAGA-TTGTGAGTCCAACAGGA-AGGTAATAG-AA-A-ATATAT------A---TACATTTCACT-ATACATATTATGTATCA-ATTATATATATTTT-TAA-AAAAATCTAA-GGAGCATAGCTAGCGC-ACGGTTGATT-CCTTTGTGTCA-CATTTAAGTATTTGTAAATTTGTATATGT-ATATTTAAG-CATATAATATAACAA-AAATGTATTGTACTT</genome_strand>
        <mrna_strand>CAAACATGAACCAAGGACATGTTTCAACAGTCGTAAAGGGTAGCTTCGGGTATTTAGATCCTGAATACTTCAGAAGACAACAATTGACTGAAAAATCAGATGTGTACTCATATGGTGTTGTCCTATTTGAAGTACTGTGTGCAAGGCCAGCTCTTAACTCAAATCTTCCGAAAGAACAAGTTAGTCTTGCAGATTGGGCATTAGCTTGTCAAAGGAAAGGGAATTTAGAAGATATTATTGATCCACATTTGAAAGGCAAGATCAATCCTGAATGCTTGAAAAAATTTGCAGAAACAGCTGAGAAATGCTTAGCTGATAATGGTATAAATCGTCCGTCCATGGGTGATGTGTTATGGAATCTTGAATATGCCCTTCAGCTACAAGAAAATCCAGATGGTATTTTATCAACTTCCGAGGCAACGAAACAGGTTGATCATGACAATGCTGATCAACACAGTTTGATAGCTATGCATAGAAGCACTTTGAGCCTTGAAAGTGAAAATGAAAATGAAAATGCTGATGGTAAAACAGCATGATGTCTTTTCACAGANTTGTGAGTCCAACAGGAGAGGTAATAGAAANATATATATACAACAACTGTACATTTCACTNATATATATTATGTATCACACTATATATATTTTAAAACAAAAATCTAAGGGAGCATAGCTAGCGCNACGGTTGATTCCCTTTGTGTCACCATTTAAGTATTTGTAAATTTGAATAAGTCATATTTAAGCCATATAATATAACAACAAATGTATTGTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547088" ref_strand="+" ref_description="SGN-E547088 [TUS-70-M15]">
      <seq>atttggaaaggtatacaaaggagttatcgatggtgacacgaaagttgcaatcaaaagatcaaatccatcttcagaacaaggagtcaatgaattccagactgaaattgagatgctctcaaagctaaggcatcgacatttagtgtccttgatcggattttgtgaagagaacaatgaaatggtccttgtttatgaccacatggcacatggaacattaagggagcatctttacaaaggtaacaaaactatactatcttggaagcaaaggttggagatttgtattggatcagccagaggacttcattaccttcacacaggagctaaatacactattatacatagagatgtgaaaagtacaaacattttgttaaatgacaaatgggttgctaaggtttcagattttggactttccaaaacaggtccaaacatgaaccaaggacatgtttcaacagtcgtaaagggtagcttcgggtatttagatcctgaatacttcagaagacaacaattgactgaaaaatcagatgtgtactcatatggtgttgtcctatttgaagtactgtgtgcaaggccagctcttaactcaaatcttccgaaagaacaagttagtcttgcagattgggcattagcttgtcaaaggaaagggaatttagaagatattattgatccacatttgaaaggcaagatcaatcctgaaatgctgaaaaaatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37074" stop="35767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36774" g_stop="36067" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="708" r_length="708" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E547088" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36774" e_stop="36067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGGAAAGGTATACAAAGGAGTTATCGATGGTGACACGAAAGTTGCAATCAAAAGATCAAATCCATCTTCAGAACAAGGAGTCAATGAATTCCAAACTGAAATCGAGATGCTCTCAAAGCTAAGGCATCGACATTTAGTGTCCTTGATCGGATTTTGTGAAGAGAACAATGAAATGGTCCTTGTTTATGACCACATGGCACATGGAACATTAAGGGAGCATCTTTACAAAGGTAACAAAACTATACTATCTTGGAAGCAAAGGTTGGAGATTTGCATTGGGTCAGCCAGAGGACTTCATTACCTTCACACAGGAGCTAAATACACTATTATACATAGAGATGTGAAAAGTACAAACATTTTGTTAAATGACAAATGGGTTGCTAAGGTTTCAGATTTTGGACTTTCCAAAACAGGTCCAAACATGAACCAAGGACATGTTTCAACAGTCGTAAAGGGTAGCTTCGGGTATTTAGATCCTGAATACTTCAGAAGACAACAATTGACTGAAAAATCAGATGTGTACTCGTATGGTGTTGTCCTATTTGAAGTACTGTGTGCAAGGCCAGCTCTTAACTCAAATCTTCCGAAAGAACAAGTTAGTCTTGCAGATTGGGCATTAGCTTGTCAAAGGAAAGGGAATTTAGAAGATATTATTGATCCACATTTGAAAGGCAAGATCAATCCTGAATGCTTGAAAAAATTTGC</genome_strand>
        <mrna_strand>ATTTGGAAAGGTATACAAAGGAGTTATCGATGGTGACACGAAAGTTGCAATCAAAAGATCAAATCCATCTTCAGAACAAGGAGTCAATGAATTCCAGACTGAAATTGAGATGCTCTCAAAGCTAAGGCATCGACATTTAGTGTCCTTGATCGGATTTTGTGAAGAGAACAATGAAATGGTCCTTGTTTATGACCACATGGCACATGGAACATTAAGGGAGCATCTTTACAAAGGTAACAAAACTATACTATCTTGGAAGCAAAGGTTGGAGATTTGTATTGGATCAGCCAGAGGACTTCATTACCTTCACACAGGAGCTAAATACACTATTATACATAGAGATGTGAAAAGTACAAACATTTTGTTAAATGACAAATGGGTTGCTAAGGTTTCAGATTTTGGACTTTCCAAAACAGGTCCAAACATGAACCAAGGACATGTTTCAACAGTCGTAAAGGGTAGCTTCGGGTATTTAGATCCTGAATACTTCAGAAGACAACAATTGACTGAAAAATCAGATGTGTACTCATATGGTGTTGTCCTATTTGAAGTACTGTGTGCAAGGCCAGCTCTTAACTCAAATCTTCCGAAAGAACAAGTTAGTCTTGCAGATTGGGCATTAGCTTGTCAAAGGAAAGGGAATTTAGAAGATATTATTGATCCACATTTGAAAGGCAAGATCAATCCTGAAATGCTGAAAAAATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360773" ref_strand="+" ref_description="SGN-E360773 [cLPP-7-E12]">
      <seq>tttggaaaggtgtacaaaggagttatcgatggtgacacgaaagttgcaatcaaaagatcaaatccatcttcagaacaaggagtcaatgaattccagactgaaattgagatgctctcaaagctaaggcatcgacatttagtgtccttgatcggattttgtgaagagaacaatgaaatggtccttgtttatgaccacatggcacatggaacattaagggagcatctttacaaaggtaacaaaactatactatcttggaagcaaaggttggagatttgtattggatcagccacaggacttcattaccttcacacaggagctaaatacactattatacatagagatgtgaaaagtacaaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37073" stop="36114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36773" g_stop="36414" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E360773" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36773" e_stop="36414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGAAAGGTATACAAAGGAGTTATCGATGGTGACACGAAAGTTGCAATCAAAAGATCAAATCCATCTTCAGAACAAGGAGTCAATGAATTCCAAACTGAAATCGAGATGCTCTCAAAGCTAAGGCATCGACATTTAGTGTCCTTGATCGGATTTTGTGAAGAGAACAATGAAATGGTCCTTGTTTATGACCACATGGCACATGGAACATTAAGGGAGCATCTTTACAAAGGTAACAAAACTATACTATCTTGGAAGCAAAGGTTGGAGATTTGCATTGGGTCAGCCAGAGGACTTCATTACCTTCACACAGGAGCTAAATACACTATTATACATAGAGATGTGAAAAGTACAAACATT</genome_strand>
        <mrna_strand>TTTGGAAAGGTGTACAAAGGAGTTATCGATGGTGACACGAAAGTTGCAATCAAAAGATCAAATCCATCTTCAGAACAAGGAGTCAATGAATTCCAGACTGAAATTGAGATGCTCTCAAAGCTAAGGCATCGACATTTAGTGTCCTTGATCGGATTTTGTGAAGAGAACAATGAAATGGTCCTTGTTTATGACCACATGGCACATGGAACATTAAGGGAGCATCTTTACAAAGGTAACAAAACTATACTATCTTGGAAGCAAAGGTTGGAGATTTGTATTGGATCAGCCACAGGACTTCATTACCTTCACACAGGAGCTAAATACACTATTATACATAGAGATGTGAAAAGTACAAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546754" ref_strand="+" ref_description="SGN-E546754 [TUS-70-E13]">
      <seq>cttctaactgccgatatttttcactagctgagatcaaacaggccactaagaacttcgacgaatcatatgtcattggagttggtggatttggaaaagtgtacaaaggagttattgatggtgacacgaaagttgcaataaaaagatcaaacccatcttcacaacaaggggttaacgaatttcaaactgaaattgagttgctttcaatgctaaggcatagacatttagtgtccctaatcggattttgtgaagagaataatgaaatggtccttgtctatgaccacatggcatacggaacattaagagaacatctttataaaggtaataaaactgtactatcttggaagcaaaggttggagatttgtattggagcagctagaggacttcattaccttcatacaggatctaaatacaccatcattcatagggatgtgaaaagtacaaacattttgttaaatgacaagtgggttgctaaggtatcagattttggactttcaaaaacaggtccaaacatgaaccagggacatgtttcaacagtcgtaaagggtagctttggttatttggatcccgaatacttcagaagacaacaattgactgaaaaatcagatgtatactcatttggggttgtcctgtttgaagtattgtgtgcaaggccagcgcttaatccaacccgttcaaaagaacaagttagtcttgcagattgggcattagcttgtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41573" stop="40258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41273" g_stop="40558" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E546754" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41273" e_stop="40558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTAATTGCCGATATTTTTCACTAGCTGAGATCAAACAGGCCACTAAGAACTTCGACGAATCATATGTCATTGGAGTTGGTGGATTTGGAAAAGTGTACAAAGGAGTTATTGATGGTGACACGAAAGTTGCAATAAAAAGATCAAACCCATCTTCACAACAAGGGGTTAACGAATTTCAAACTGAAATTGAGTTGCTTTCAATGCTAAGGCATAGACATTTAGTGTCCCTAATCGGATTTTGTGAAGAGAATAATGAAATGGTCCTTGTCTATGACCACATGGCATACGGAACATTAAGAGAACATCTTTATAAAGGTAATAAAACTGTACTATCTTGGAAGCAAAGGTTGGAGATTTGTATTGGAGCAGCTAGAGGACTTCATTACCTTCATACAGGATCTAAATACACCATCATTCATAGGGATGTGAAAAGTACAAACATTTTGTTAAATGACAAGTGGGTTGCTAAGGTATCAGATTTTGGACTTTCAAAAACAGGTCCAAACATGAACCAAGGACATGTTTCAACAGTCGTAAAGGGTAGCTTTGGTTATTTGGATCCCGAATACTTCAGAAGACAACAATTGACTGAAAAATCAGATGTATACTCATTTGGGGTTGTCCTGTTTGAAGTATTGTGTGCAAGGCCAGCGCTTAATCCAACCCGTTCAAAAGAACAAGTTAGTCTTGCAGATTGGGCATTAGCTTGTCAA</genome_strand>
        <mrna_strand>CTTCTAACTGCCGATATTTTTCACTAGCTGAGATCAAACAGGCCACTAAGAACTTCGACGAATCATATGTCATTGGAGTTGGTGGATTTGGAAAAGTGTACAAAGGAGTTATTGATGGTGACACGAAAGTTGCAATAAAAAGATCAAACCCATCTTCACAACAAGGGGTTAACGAATTTCAAACTGAAATTGAGTTGCTTTCAATGCTAAGGCATAGACATTTAGTGTCCCTAATCGGATTTTGTGAAGAGAATAATGAAATGGTCCTTGTCTATGACCACATGGCATACGGAACATTAAGAGAACATCTTTATAAAGGTAATAAAACTGTACTATCTTGGAAGCAAAGGTTGGAGATTTGTATTGGAGCAGCTAGAGGACTTCATTACCTTCATACAGGATCTAAATACACCATCATTCATAGGGATGTGAAAAGTACAAACATTTTGTTAAATGACAAGTGGGTTGCTAAGGTATCAGATTTTGGACTTTCAAAAACAGGTCCAAACATGAACCAGGGACATGTTTCAACAGTCGTAAAGGGTAGCTTTGGTTATTTGGATCCCGAATACTTCAGAAGACAACAATTGACTGAAAAATCAGATGTATACTCATTTGGGGTTGTCCTGTTTGAAGTATTGTGTGCAAGGCCAGCGCTTAATCCAACCCGTTCAAAAGAACAAGTTAGTCTTGCAGATTGGGCATTAGCTTGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362713" ref_strand="+" ref_description="SGN-E362713 [cLPP-1-H1]">
      <seq>ttctaactgccgatatttttcactagctgagatcaaacaggccactaagaacttcgacgaatcatatgtcattggagttggtggatttggaaaagtgtacaaaggagttattgatggtgacacgaaagttgcaataaaaagatcaaacccatcttcacaacaaggggttaacgaatttcaaactgaaattgagttgctttcaatgctaaggcatagacatttagtgtccctaatcggattttgtgaagagaataatgaaatggtccttgtctatgaccacatggcatacggaacattaagagaacatctttataaaggtaataaaactgtactatcttggaagcaaaggttggagatttgtattggagcagctagaggacttcattaccttcatacaggatctaaatacaccatcattcatagggatgtgaaaagtacaaacattttgttaaatgacaagtgggttgctaaggtatcagattttggactttcaaaaacaggtccaaacatgaaccagggacatgtttcaacagtcgtaaagggtagctttggttatttggatcccgaatacttcagaagacaacaattgactgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41572" stop="40376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41272" g_stop="40676" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E362713" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41272" e_stop="40676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAATTGCCGATATTTTTCACTAGCTGAGATCAAACAGGCCACTAAGAACTTCGACGAATCATATGTCATTGGAGTTGGTGGATTTGGAAAAGTGTACAAAGGAGTTATTGATGGTGACACGAAAGTTGCAATAAAAAGATCAAACCCATCTTCACAACAAGGGGTTAACGAATTTCAAACTGAAATTGAGTTGCTTTCAATGCTAAGGCATAGACATTTAGTGTCCCTAATCGGATTTTGTGAAGAGAATAATGAAATGGTCCTTGTCTATGACCACATGGCATACGGAACATTAAGAGAACATCTTTATAAAGGTAATAAAACTGTACTATCTTGGAAGCAAAGGTTGGAGATTTGTATTGGAGCAGCTAGAGGACTTCATTACCTTCATACAGGATCTAAATACACCATCATTCATAGGGATGTGAAAAGTACAAACATTTTGTTAAATGACAAGTGGGTTGCTAAGGTATCAGATTTTGGACTTTCAAAAACAGGTCCAAACATGAACCAAGGACATGTTTCAACAGTCGTAAAGGGTAGCTTTGGTTATTTGGATCCCGAATACTTCAGAAGACAACAATTGACTGAAAA</genome_strand>
        <mrna_strand>TTCTAACTGCCGATATTTTTCACTAGCTGAGATCAAACAGGCCACTAAGAACTTCGACGAATCATATGTCATTGGAGTTGGTGGATTTGGAAAAGTGTACAAAGGAGTTATTGATGGTGACACGAAAGTTGCAATAAAAAGATCAAACCCATCTTCACAACAAGGGGTTAACGAATTTCAAACTGAAATTGAGTTGCTTTCAATGCTAAGGCATAGACATTTAGTGTCCCTAATCGGATTTTGTGAAGAGAATAATGAAATGGTCCTTGTCTATGACCACATGGCATACGGAACATTAAGAGAACATCTTTATAAAGGTAATAAAACTGTACTATCTTGGAAGCAAAGGTTGGAGATTTGTATTGGAGCAGCTAGAGGACTTCATTACCTTCATACAGGATCTAAATACACCATCATTCATAGGGATGTGAAAAGTACAAACATTTTGTTAAATGACAAGTGGGTTGCTAAGGTATCAGATTTTGGACTTTCAAAAACAGGTCCAAACATGAACCAGGGACATGTTTCAACAGTCGTAAAGGGTAGCTTTGGTTATTTGGATCCCGAATACTTCAGAAGACAACAATTGACTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475388" ref_strand="+" ref_description="SGN-E475388 [cSTB-38-J16]">
      <seq>cttggaattgcgtttcgccatagacagtgaagctcgaaagttgagagcttttctctgctcacaaatttagtccattaatgcttcaaagaatgaaactttgctgcttttaatgggcagagatgttcatcatcttcttagtcttgttaaaaagtaccaaaactatcgcaaaccaattcagcaaattcatactcagttaatattcaccactgcagaaaacaccttcaactcaacttcttcaatacccattttattaactctctggaactctataattcgacattactctcttggtattttcccacaagaatctttttttctgttcaaacaattgcggctacagtatcaccccattatcttttttgatagctttacatattcattcttgattaaagggtcagctaatttacgaaagttctgtattgggaagcagattcattgtttgagtttgaacggtgggtttgaatctcatgtttatgtgcaaactgcattggttaatatgtatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59828" stop="58731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59528" g_stop="59031" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E475388" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59528" e_stop="59031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGAATTGCGTTTCGCCATAGACAGTGAAGCTCGAAAGTTGAGAGCTTTTTTTCTGCTCTCAAATTTAGTCCATTAATGCTTCAAAGAATGAAAC-TT--TG------ATGGGCAGAGATGTTCATCATCTTCTTAGTCTTGTTAAAAAGTACCAAAACCATCGCAAACCAATTCAGCAAATTCATACTCAGTTAATATTCACCACTGCAGAAAACACCTTCAACTCAACTTCTTCAATACCCATTTTATTAACTCTATGGAACTCTTTAATTCGGCATTACTCTCTTGGTATTTTCCCACAAGAATCTTTTCTTCTGTTCAAACAATTGCGGTTACAGTATCACCCCATTATCTTTTTTGATAGCTTTACATATTCATTCTTGATTAAAGGATCAGCTAATTTAGGAAAGTTTTGTATTGGGAAGCAGATTCATTGTTTGAGTTTGAAGGATGGATTTGAATCTCATGTTTATGTGCAAACTGCATTGGTTAATATGTATGGGG</genome_strand>
        <mrna_strand>CTTGGAATTGCGTTTCGCCATAGACAGTGAAGCTCGAAAGTTGAGAGC-TTTTCTCTGCTCACAAATTTAGTCCATTAATGCTTCAAAGAATGAAACTTTGCTGCTTTTAATGGGCAGAGATGTTCATCATCTTCTTAGTCTTGTTAAAAAGTACCAAAACTATCGCAAACCAATTCAGCAAATTCATACTCAGTTAATATTCACCACTGCAGAAAACACCTTCAACTCAACTTCTTCAATACCCATTTTATTAACTCTCTGGAACTCTATAATTCGACATTACTCTCTTGGTATTTTCCCACAAGAATCTTTTTTTCTGTTCAAACAATTGCGGCTACAGTATCACCCCATTATCTTTTTTGATAGCTTTACATATTCATTCTTGATTAAAGGGTCAGCTAATTTACGAAAGTTCTGTATTGGGAAGCAGATTCATTGTTTGAGTTTGAACGGTGGGTTTGAATCTCATGTTTATGTGCAAACTGCATTGGTTAATATGTATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262800" ref_strand="+" ref_description="SGN-E262800 [cLEG-63-P6]">
      <seq>cttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72282" stop="71303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71982" g_stop="71596" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E262800" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71982" e_stop="71596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGAAAATGGCTATAAAAGGAATTCAATTTTTGATTTTTTTCAAACACTGAAAATTTTTCCTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTTTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGGTATTTCTTTAACAGGTTTAATCTGTTTTATCTTGGGAGAAATTAATCCATAACCATGGGTACAATGAGGGGATTAAATTTCTTAAGGACAGACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTTTATATTA-TTTCTGCTTCATCTTATTTCTGTTTCTTTTTATTAACCTTATAAATACAA-TTATTGTAAGAATAACAACAGTACG</genome_strand>
        <mrna_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATT-TTTT-AAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258205" ref_strand="+" ref_description="SGN-E258205 [cLEG-49-B23]">
      <seq>aatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctggttctgtttattaactttataaataaaaggtattataagagtaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72226" stop="71321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71926" g_stop="71600" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E258205" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71926" e_stop="71600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTCCTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTTTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGGTATTTCTTTAACAGGTTTAATCTGTTTTATCTTGGGAGAAATTAATCCATAACCATGGGTACAATGAGGGGATTAAATTTCTTAAGGACAGACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTTTATATTA-TTTCTGCTTCATCTTATTTCTGTTTCTTTTTATTAACCTTATAAATACAA-TTATTGTAAGAATAACAACAG</genome_strand>
        <mrna_strand>AATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGGTTCTGTTTATTAACTTTATAAATAAAAGGTATTATAAGAGTAACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72291" stop="71464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71992" g_stop="71764" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71992" e_stop="71764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACGTTCCTTGCTGAAAATGGCTATAAAAGGAATTCAATTTTTGATTTTTTTCAAACACTGAAAATTTTTCCTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTTTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGGTATTTCTTTAACAGGTTTAATCTGTTTTATCTTGGGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGA-TTTTTT-AAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549200" ref_strand="+" ref_description="SGN-E549200 [TUS-68-D15](-)">
      <seq>taaagtttcaacatatataaacataattttttaggggtattttttctcatactcctaacaagggaaagtttgatttaagggattccttccaaccccatataaggagacaaagggtcccgacttataacgtaaggcatgtcaaaagacccaaaagtgttgtgatgaagaaaaggatacgcgtagaactttttagaaggttcggggatgagattggaagtaaagtcaagatcctcaagaagttgattccaattaactgtgaagatttggggctggaagggattttcagagagacagcggattccattttggctttagaaatgggaattaaggctttccaagatatggtaaatgtattgtcccattttaatccctaaatcaggtattattttattattatatggggtcaaaaatgacttatatccagattaattaacggaggttgtttctttgttcattcaccaatgttaatgggaatgtctccaattgtgaaattgcaaaactttatagttttgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86171" stop="85056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85871" g_stop="85356" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="520" polyA_stop="570"/>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E549200" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85871" e_stop="85356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGATTCAACATATATAAACATAATTTCTTATGGGTATTTTTTCTCATACTCCTAACAAGGGAAAGTTTGATTTAAGCGATTCCTTCCAATGCGATATAAGCAGACAAAGAGTCACGACTTATAACGTAAGGCATGTCAAAAGGTGCAAAAGTGTTGTGATGAAGAGAAGGATACGCGTAGAACGTTCTAGAAGGTTCGAGGATGAGATTGGAAGTAAAGTCAAGATACTCAAGAAGTTGATTCCAATTAACTGTGAAGATTTGGGGCTGGAAGGGATTTTCAGAGAGACAGCTGATTACATTTTGGCTTTAGAAATGAGAATTAAGGCTATGCAAGATATGGTAAATGTATTGTCACATTCTAATCACTAAATCATGTATTATTTTATTATTATATTGTGTCAAAAATGACTTATATACAGATTAATTAACTGATGTTGTTTCTTTGTTCATTCATCAATGTTAATGTGAATGTCTACAATTGTGAAATTGCAAAACTATATAGTTATGTAAA</genome_strand>
        <mrna_strand>TAAAGTTTCAACATATATAAACATAATTTTTTAGGGGTATTTTTTCTCATACTCCTAACAAGGGAAAGTTTGATTTAAGGGATTCCTTCCAACCCCATATAAGGAGACAAAGGGTCCCGACTTATAACGTAAGGCATGTCAAAAGACCCAAAAGTGTTGTGATGAAGAAAAGGATACGCGTAGAACTTTTTAGAAGGTTCGGGGATGAGATTGGAAGTAAAGTCAAGATCCTCAAGAAGTTGATTCCAATTAACTGTGAAGATTTGGGGCTGGAAGGGATTTTCAGAGAGACAGCGGATTCCATTTTGGCTTTAGAAATGGGAATTAAGGCTTTCCAAGATATGGTAAATGTATTGTCCCATTTTAATCCCTAAATCAGGTATTATTTTATTATTATATGGGGTCAAAAATGACTTATATCCAGATTAATTAACGGAGGTTGTTTCTTTGTTCATTCACCAATGTTAATGGGAATGTCTCCAATTGTGAAATTGCAAAACTTTATAGTTTTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545397" ref_strand="+" ref_description="SGN-E545397 [TUS-68-D15]">
      <seq>taaagattcaacatatataaacataatttcttatgggtattttttctcatactcctaacaagggaaagtttgatttaagcgattccttccaacgccatataaggagacaaagagtcacgacttataacgtaaggcatgtcaaaagacgcaaaagtgttgtgatgaagagaaggatacgcgtagaacgttctagaaggttcgaggatgagattggaagtaaagtcaagatactcaagaagttgattccaattaactgtgaagatttggggctggaagggattttcagagagacagctgattacattttggctttagaaatgagaattaaggctatgcaagatatggtaaatgtattgtcacattctaatcactaaatcatgtattattttattattatattgtgtcaaaaatgacttatatacagattaattaactgatgttgtttctttgttcattcatcaatgttaatgtgaatgtctacaattgtgaaattgcaaaactatatagttatgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86171" stop="85056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85871" g_stop="85356" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E545397" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85871" e_stop="85356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGATTCAACATATATAAACATAATTTCTTATGGGTATTTTTTCTCATACTCCTAACAAGGGAAAGTTTGATTTAAGCGATTCCTTCCAATGCGATATAAGCAGACAAAGAGTCACGACTTATAACGTAAGGCATGTCAAAAGGTGCAAAAGTGTTGTGATGAAGAGAAGGATACGCGTAGAACGTTCTAGAAGGTTCGAGGATGAGATTGGAAGTAAAGTCAAGATACTCAAGAAGTTGATTCCAATTAACTGTGAAGATTTGGGGCTGGAAGGGATTTTCAGAGAGACAGCTGATTACATTTTGGCTTTAGAAATGAGAATTAAGGCTATGCAAGATATGGTAAATGTATTGTCACATTCTAATCACTAAATCATGTATTATTTTATTATTATATTGTGTCAAAAATGACTTATATACAGATTAATTAACTGATGTTGTTTCTTTGTTCATTCATCAATGTTAATGTGAATGTCTACAATTGTGAAATTGCAAAACTATATAGTTATGTAAA</genome_strand>
        <mrna_strand>TAAAGATTCAACATATATAAACATAATTTCTTATGGGTATTTTTTCTCATACTCCTAACAAGGGAAAGTTTGATTTAAGCGATTCCTTCCAACGCCATATAAGGAGACAAAGAGTCACGACTTATAACGTAAGGCATGTCAAAAGACGCAAAAGTGTTGTGATGAAGAGAAGGATACGCGTAGAACGTTCTAGAAGGTTCGAGGATGAGATTGGAAGTAAAGTCAAGATACTCAAGAAGTTGATTCCAATTAACTGTGAAGATTTGGGGCTGGAAGGGATTTTCAGAGAGACAGCTGATTACATTTTGGCTTTAGAAATGAGAATTAAGGCTATGCAAGATATGGTAAATGTATTGTCACATTCTAATCACTAAATCATGTATTATTTTATTATTATATTGTGTCAAAAATGACTTATATACAGATTAATTAACTGATGTTGTTTCTTTGTTCATTCATCAATGTTAATGTGAATGTCTACAATTGTGAAATTGCAAAACTATATAGTTATGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308774" ref_strand="+" ref_description="SGN-E308774 [cLEZ-11-M18]">
      <seq>aaagattcaacatatataaacataatttcttatgggtattttttctcatactcctaacaagggaaagtttgatttaagcgattccttccaacgccatataaggagacaaagagtcacgacttataacgtaaggcatgtcaaaagacgcaaaagtgttgtgatgaagagaaggatacgcgtataacgttctagaaggttcgaggatgagattggaagtaaagtcaagatactcaagaagttgattccaattaactgtgaagatttggggctggaagggattttcagagagacagctgattacattttggctttagaaatgagaattaaggctatgcaagatatggtaaatgtattgtcacattctaatcactaaatcatgtattattgtattattatattgtgtcaaaaatgacttatatacagattaattaactgatgttgtttctttgttcattcatcaatgttaatgtgaatgtctacaattgtgaaattgcaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86170" stop="85072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85870" g_stop="85372" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E308774" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85870" e_stop="85372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTCAACATATATAAACATAATTTCTTATGGGTATTTTTTCTCATACTCCTAACAAGGGAAAGTTTGATTTAAGCGATTCCTTCCAATGCGATATAAGCAGACAAAGAGTCACGACTTATAACGTAAGGCATGTCAAAAGGTGCAAAAGTGTTGTGATGAAGAGAAGGATACGCGTAGAACGTTCTAGAAGGTTCGAGGATGAGATTGGAAGTAAAGTCAAGATACTCAAGAAGTTGATTCCAATTAACTGTGAAGATTTGGGGCTGGAAGGGATTTTCAGAGAGACAGCTGATTACATTTTGGCTTTAGAAATGAGAATTAAGGCTATGCAAGATATGGTAAATGTATTGTCACATTCTAATCACTAAATCATGTATTATTTTATTATTATATTGTGTCAAAAATGACTTATATACAGATTAATTAACTGATGTTGTTTCTTTGTTCATTCATCAATGTTAATGTGAATGTCTACAATTGTGAAATTGCAAAAC</genome_strand>
        <mrna_strand>AAAGATTCAACATATATAAACATAATTTCTTATGGGTATTTTTTCTCATACTCCTAACAAGGGAAAGTTTGATTTAAGCGATTCCTTCCAACGCCATATAAGGAGACAAAGAGTCACGACTTATAACGTAAGGCATGTCAAAAGACGCAAAAGTGTTGTGATGAAGAGAAGGATACGCGTATAACGTTCTAGAAGGTTCGAGGATGAGATTGGAAGTAAAGTCAAGATACTCAAGAAGTTGATTCCAATTAACTGTGAAGATTTGGGGCTGGAAGGGATTTTCAGAGAGACAGCTGATTACATTTTGGCTTTAGAAATGAGAATTAAGGCTATGCAAGATATGGTAAATGTATTGTCACATTCTAATCACTAAATCATGTATTATTGTATTATTATATTGTGTCAAAAATGACTTATATACAGATTAATTAACTGATGTTGTTTCTTTGTTCATTCATCAATGTTAATGTGAATGTCTACAATTGTGAAATTGCAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291466" ref_strand="+" ref_description="SGN-E291466 [cLET-2-H1]">
      <seq>ttgcaaattcaaaatatcttcttcttcttcaccctaacacagagcaaataaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccaaagtagttccggataagaagctatctgatttagttgcggaaagggttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatccgatgttctggagaattattgcaaggataatccacaaactgatgaatgccgcacttacgataattaattatgatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87593" stop="88631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87882" g_stop="88331" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E291466" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87882" e_stop="88331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAATAAAAAAATATCTTCTTCTTCTTCACCCTAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGA</genome_strand>
        <mrna_strand>TTGCAAATTCAAAA-TATCTTCTTCTTCTTCACCCTAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAAAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGGGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCCGATGTTCTGGAGAATTATTGCAAGGATAATCCACAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733800" ref_strand="+" ref_description="SGN-E733800 [LB10DH09]">
      <seq>gagcaataatatcttcttcttcttcttcaccctaacacagagcaaataaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttatgttatgtatggtatggtgtttaattatacatactgttaccatgaattccaatttatgtgatatagtttgaacgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87587" stop="88790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87884" g_stop="88497" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E733800" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87884" e_stop="88497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATAAAAAAATATCTTCTTCTTCTTCACCCTAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAACGAATTGAAAA</genome_strand>
        <mrna_strand>GAGCAATAATATCT-TCTTCTTCTTCTTCACCCTAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459086" ref_strand="+" ref_description="SGN-E459086 [cPRO-33-E14]">
      <seq>gaaaaacatcttcttcttcttcaccttaacacagagcaaaaaaaaatggcgtccatagctggtgttagtatcacaaccccaagaatttcatccgattcccctaaaattcaaccgttgaaattcccaaccctaaacagtccatggaagaaatcaggtcaattcggttacgggaggatgtatgtagtagtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaagcttgtgcggaggatccggtgagcggtgagtgtaaggcggcgtgggatgtggtggaagagacgagtgcggcggcgagccatgccagggataggaagaaggaatcagatgtgctggagaattattgtaaggataatccagaaacggatgaatgccgcacttatgataactgattatgattatgatgatagtagctactcatgtgttgtgtttttttcaaatggtaatttgatactctgttttatcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87592" stop="88665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87891" g_stop="88375" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="500" polyA_stop="511"/>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E459086" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87891" e_stop="88375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATATCTTCTTCTTCTTCACCCTAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATG</genome_strand>
        <mrna_strand>GAAAAACATCTTCTTCTTCTTCACCTTAACACAGAGCAAAAAAAAATGGCGTCCATAGCTGGTGTTAGTATCACAACCCCAAGAATTTCATCCGATTCCCCTAAAATTCAACCGTTGAAATTCCCAACCCTAAACAGTCCATGGAAGAAATCAGGTCAATTCGGTTAC--G-GGAGGATGTATGTAGTAGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAGCTTGTGCGGAGGATCCGGTGAGCGGTGAGTGTAAGGCGGCGTGGGATGTGGTGGAAGAGACGAGTGCGGCGGCGAGCCATGCCAGGGATAGGAAGAAGGAATCAGATGTGCTGGAGAATTATTGTAAGGATAATCCAGAAACGGATGAATGCCGCACTTATGATAACTGATTATGATTATGATGA-TAGTAGCTACTCATG---TG--TTGTGTTTTTTTCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746566" ref_strand="+" ref_description="SGN-E746566 [GI|47104184]">
      <seq>tttttttttttttttataattaaacaccataccatacataacataagagaagatttaagttttgataaaacagattaccatttgaaaagaacacaagacatgacatgagtagctgctactaatcatcatcataattaattatcgtaagtgcggcattcatcagtttctggattatccttgcaataattctccagtacatctgattccttcttcttatccctcgcatggctcgctgctgcactcgtctcttccaccacatcccatgccgccttacactcgccgctcaccggatcctccgcacaagtttcttcagcttctttaacactttccgcaactaaatcagatagcttcttatccggaactactctgggtaccactacatacatcatcctcctgtaacccaattgacttgatttcttccatgggctgtttagggtttgcaatttcaagggctgaattttgggtgaatcggatgaaattgttgggattgttatactaacaccggctatggacgccatttttatttgctctgtgttagggtgaagaagaagaagatattttgaatttgaaattagaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88743" stop="87593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88443" g_stop="87893" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="561" r_length="551" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="574" polyA_stop="600"/>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E746566" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88443" e_stop="87893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTATAATTAAACACCATACCATACATAACATAAGAGAAGATTTAAGTTTTGATAAAACAGATTACCATTTGAAAAGAACACAAGACATGACATGAGTAGCTGCTACTAATCATCATCATAATTAATTATCGTAAGTGCGGCATTCATCAGTTTCTGGATTATCCTTGCAATAATTCTCCAGTACATCTGATTCCTTCTTCTTATCCCTCGCATGGCTCGCTGCTGCACTCGTCTCTTCCACCACATCCCATGCCGCCTTACACTCGCCGCTCACCGGATCCTCCGCACAAGTTTCTTCAGCTTCTTTAACACTTTCCGCAACTAAATCAGATAGCTTCTTATCCGGAACTACTCTGGGTACCACTACATACATCATCCTCCTGTAACCCAATTGACTTGATTTCTTCCATGGGCTGTTTAGGGTTTGCAATTTCAAGGGCTGAATTTTGGGTGAATCGGATGAAATTGTTGGGATTGTTATACTAACACCGGCTATGGACGCCATTTTTATTTGCTCTGTGTTAGGGTGAAGAAGAAGAAGATATTTT</genome_strand>
        <mrna_strand>TTTTTATAATTAAACACCATACCATACATAACATAAGAGAAGATTTAAGTTTTGATAAAACAGATTACCATTTGAAAAGAACACAAGACATGACATGAGTAGCTGCTACTAATCATCATCATAATTAATTATCGTAAGTGCGGCATTCATCAGTTTCTGGATTATCCTTGCAATAATTCTCCAGTACATCTGATTCCTTCTTCTTATCCCTCGCATGGCTCGCTGCTGCACTCGTCTCTTCCACCACATCCCATGCCGCCTTACACTCGCCGCTCACCGGATCCTCCGCACAAGTTTCTTCAGCTTCTTTAACACTTTCCGCAACTAAATCAGATAGCTTCTTATCCGGAACTACTCTGGGTACCACTACATACATCATCCTCCTGTAACCCAATTGACTTGATTTCTTCCATGGGCTGTTTAGGGTTTGCAATTTCAAGGGCTGAATTTTGGGTGAATCGGATGAAATTGTTGGGATTGTTATACTAACACCGGCTATGGACGCCATTTTTATTTGCTCTGTGTTAGGGTGAAGAAGAAGAAGATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723711" ref_strand="+" ref_description="SGN-E723711 [FC21BG11]">
      <seq>atcttcttcttcttcctacactaacacagagcaaataaaattggggcccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagccctggaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtactggtacccaaagtagttccggataacaagctatctgatttagttgcggaaagtgttaaagaagctgaacaaacttgtgcggaggatccggtgaacgacgagtgtaaggcggcatgtgatgtggtggaagagacaagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgaactggataattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtaccagctactcaggtcatgtcttgtgttctttacaaatggtaatctgttttatcaaaacttaaatcttctcttatgtaatgtatggcatggggtttaattatacatactgttaccatgaaaaaaattcaaatggttgaagaatgatggtttttttttttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87598" stop="88756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87895" g_stop="88455" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E723711" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87895" e_stop="88455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCTTCTTCTTCTTCACCCTAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGA</genome_strand>
        <mrna_strand>ATCTTCTTCTTCTTCCT-ACACTAACACAGAGCAAATAAAATTGGGGCCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTGGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTACTGGTACCCAAAGTAGTTCCGGATAACAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAACAAACTTGTGCGGAGGATCCGGTGAACGACGAGTGTAAGGCGGCATGTGATGTGGTGGAAGAGACAAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGAACTGGATAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTACCAGCTACTCAGGTCATGTCTTGTGTTCTTTACAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTAATGTATGGCATGGGGTTTAATTATACATACTGTTACCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403004" ref_strand="+" ref_description="SGN-E403004 [PPC-9-G24]">
      <seq>aacatcttcttcttcttcaccttaacacagagcaaaaaaaaatggcgtccatagctggtgttagtatcacaaccccaagaatttcatccgattcccctaaaattcaaccgttgaaattcccaaccctaaacagtccatggaagaaatcaggtcaattcggttacgggaggatgtatgtagtagtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaagcttgtgcggaggatccggtgagcggtgagtgtaaggcggcgtgggatgtggtggaagagacgagtgcggcggcgagccatgccagggataggaagaaggaatcagatgtgctggagaattattgtaaggataatccagaaacggatgaatgccgcacttatgataactgattatgattatgatgatagtagctactcatgtgttgtgttttttttcaaatggtaatttgatactctgttttatcaatattgcaaaacttaatcttctcttnaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87595" stop="88685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87895" g_stop="88375" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E403004" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87895" e_stop="88375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCTTCTTCTTCTTCACCCTAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATG</genome_strand>
        <mrna_strand>AACATCTTCTTCTTCTTCACCTTAACACAGAGCAAAAAAAAATGGCGTCCATAGCTGGTGTTAGTATCACAACCCCAAGAATTTCATCCGATTCCCCTAAAATTCAACCGTTGAAATTCCCAACCCTAAACAGTCCATGGAAGAAATCAGGTCAATTCGGTTAC--G-GGAGGATGTATGTAGTAGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAGCTTGTGCGGAGGATCCGGTGAGCGGTGAGTGTAAGGCGGCGTGGGATGTGGTGGAAGAGACGAGTGCGGCGGCGAGCCATGCCAGGGATAGGAAGAAGGAATCAGATGTGCTGGAGAATTATTGTAAGGATAATCCAGAAACGGATGAATGCCGCACTTATGATAACTGATTATGATTATGATGA-TAGTAGCTACTCATG---TGTTGTGT-TTTTTTTCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200192" ref_strand="+" ref_description="SGN-E200192 [cLEB-7-L12]">
      <seq>gcacgagcttcaccctaacacagagcaaataaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccaaagtaactccggataagaagctatctgatttaattgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcaagtgtaaggcggcatgggatgtggtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87609" stop="88504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87902" g_stop="88204" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E200192" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87902" e_stop="88204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTCACCCTAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGA</genome_strand>
        <mrna_strand>GCACGAGCTTCACCCTAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAAAGTAACTCCGGATAAGAAGCTATCTGATTTAATTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCAAGTGTAAGGCGGCATGGGATGTGGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343566" ref_strand="+" ref_description="SGN-E343566 [cTOF-19-P15]">
      <seq>ttcaccctaacacagagcaaataaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttatgttatgtatggtatggtgtttaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87610" stop="88743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87910" g_stop="88446" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E343566" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87910" e_stop="88446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACCCTAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTG</genome_strand>
        <mrna_strand>TTCACCCTAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342187" ref_strand="+" ref_description="SGN-E342187 [cTOF-10-D20]">
      <seq>ccctaacacagagcaaataaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgctaaagaagctgaagaaacttgtgcggaggatccggcgagcggcgagtgtaaggcggcatgggatgtgggggaagacactagtgcagcagtgagccttgctagggataacaagaaggaatcagatggactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87614" stop="88564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87914" g_stop="88264" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E342187" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87914" e_stop="88264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGA</genome_strand>
        <mrna_strand>CCCTAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGCTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGCGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGGGGAAGACACTAGTGCAGCAGTGAGCCTTGCTAGGGATAACAAGAAGGAATCAGATGGACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717351" ref_strand="+" ref_description="SGN-E717351 [FB19DH05]">
      <seq>ctaacacagagcaaataaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttatgttatgtatggtatggtgtttaattatacatactgttaccatgaattccaatttatgtgatatagtttgaacgaacgaattgaaaatgataaagttagatcagagcagaaatataaccagagagctttagtttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87616" stop="88850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87916" g_stop="88549" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="635" polyA_stop="644"/>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E717351" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87916" e_stop="88549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAACGAATTGAAAATGATAAAGTTAGATCAGAGCAGAAATATAACCAGAGAGCTTTAGTTTAAACA</genome_strand>
        <mrna_strand>CTAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAACGAATTGAAAATGATAAAGTTAGATCAGAGCAGAAATATAACCAGAGAGCTTTAGTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732702" ref_strand="+" ref_description="SGN-E732702 [LB02DF03]">
      <seq>ctatcacagagcaaataaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttatgttatgtatggtatggtgtttaattatacatactgttaccatgaattccaatttatgtgatatagtttgaacgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87616" stop="88790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87916" g_stop="88499" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E732702" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87916" e_stop="88499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAACGAATTGAAAATG</genome_strand>
        <mrna_strand>CTATCACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729211" ref_strand="+" ref_description="SGN-E729211 [LA20BC11]">
      <seq>ctaacacagagcaaataaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttatgttatgtatggtatggtgtttaattatacatactgttaccatgaattccaatttatgtgatatagtttgaacgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87616" stop="88790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87916" g_stop="88496" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E729211" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87916" e_stop="88496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAACGAATTGAAA</genome_strand>
        <mrna_strand>CTAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715406" ref_strand="+" ref_description="SGN-E715406 [FB14AG06]">
      <seq>ctaacacagagcaaatataaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttatgttatgtatggtatggtgtttaattatacatactgttaccatgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87616" stop="88756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87916" g_stop="88468" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E715406" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87916" e_stop="88468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATG</genome_strand>
        <mrna_strand>CTAACACAGAGCAAATATAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAG-AGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371642" ref_strand="+" ref_description="SGN-E371642 [TUS-29-E6](-)">
      <seq>taacacagagcaaataaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87617" stop="88710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87917" g_stop="88409" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="494" polyA_stop="508"/>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E371642" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87917" e_stop="88409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTT</genome_strand>
        <mrna_strand>TAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280630" ref_strand="+" ref_description="SGN-E280630 [cLER-1-D12]">
      <seq>aacacagagcaaataaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87618" stop="88710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87918" g_stop="88409" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="493" polyA_stop="508"/>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E280630" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87918" e_stop="88409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTT</genome_strand>
        <mrna_strand>AACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371643" ref_strand="+" ref_description="SGN-E371643 [TUS-29-E6]">
      <seq>aacacagagcaaataaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87618" stop="88710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87918" g_stop="88409" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="493" polyA_stop="508"/>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E371643" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87918" e_stop="88409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTT</genome_strand>
        <mrna_strand>AACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712927" ref_strand="+" ref_description="SGN-E712927 [FB06AH04]">
      <seq>cacagagcaaataaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttatgttatgtatggtatggtgtttaattatacatactgttaccatgaattccaatttatgtgatatagtttgaacgaacgaattgaaaatgataaagttagatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87620" stop="88822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87920" g_stop="88522" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E712927" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87920" e_stop="88522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAACGAATTGAAAATGATAAAGTTAGATCAGAGCAGAAA</genome_strand>
        <mrna_strand>CACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAACGAATTGAAAATGATAAAGTTAGATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735053" ref_strand="+" ref_description="SGN-E735053 [LB14BC03]">
      <seq>cacttagcaaataaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttatgttatgtatggtatggtgtttaattaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87620" stop="88743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87920" g_stop="88452" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E735053" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87920" e_stop="88452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCA</genome_strand>
        <mrna_strand>CACTTAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717070" ref_strand="+" ref_description="SGN-E717070 [FB18DD05]">
      <seq>cacagagcaaataaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatccgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttatgttatgtatggtatggtgtttaattataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87620" stop="88743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87920" g_stop="88448" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E717070" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87920" e_stop="88448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTT</genome_strand>
        <mrna_strand>CACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCCGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732540" ref_strand="+" ref_description="SGN-E732540 [LB02BG12]">
      <seq>catcaaataaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttatgttatgtatggtatggtgtttaattatacatactgttaccatgaattccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87625" stop="88762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87924" g_stop="88470" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E732540" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87924" e_stop="88470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTG</genome_strand>
        <mrna_strand>CATCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736136" ref_strand="+" ref_description="SGN-E736136 [LC04CA05]">
      <seq>cgctttaaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttatgttatgtatggtatggtgtttaattatacatactgttaccatgaattccaatttatgtgatatagtttgaacgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87631" stop="88790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87925" g_stop="88494" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E736136" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87925" e_stop="88494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAACGAATTGA</genome_strand>
        <mrna_strand>CGC-TTTAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715602" ref_strand="+" ref_description="SGN-E715602 [FB14DA07]">
      <seq>agctaataaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttannaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87625" stop="88710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87925" g_stop="88411" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="489" polyA_stop="513"/>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E715602" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87925" e_stop="88411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTAT</genome_strand>
        <mrna_strand>AGCTAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740329" ref_strand="+" ref_description="SGN-E740329 [LC20DH09]">
      <seq>catataaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttatgttatgtatggtatggtgtttaattatacatactgttaccatgaattccaatttatgtgatatagtttgaacgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87627" stop="88790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87927" g_stop="88494" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E740329" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87927" e_stop="88494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAACGAATTGA</genome_strand>
        <mrna_strand>CATATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738026" ref_strand="+" ref_description="SGN-E738026 [LC12AC11]">
      <seq>caaataaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttatgttatgtatggtatggtgtttaattatacatactgttaccatgaattccaatttatgtgatatagtttgaacgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87627" stop="88790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87927" g_stop="88494" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E738026" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87927" e_stop="88494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAACGAATTGA</genome_strand>
        <mrna_strand>CAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738138" ref_strand="+" ref_description="SGN-E738138 [LC12CB05]">
      <seq>caaataaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttatgttatgtatggtatggtgtttaattatacatactgttaccatgaattccaatttatgtgatatagtttgaacgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87627" stop="88790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87927" g_stop="88494" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E738138" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87927" e_stop="88494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAACGAATTGA</genome_strand>
        <mrna_strand>CAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739657" ref_strand="+" ref_description="SGN-E739657 [LC18BD07]">
      <seq>caaataaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttatgttatgtatggtatggtgtttaattatacatactgttaccatgaattccaatttatgtgatatagtttgaacgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87627" stop="88790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87927" g_stop="88494" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E739657" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87927" e_stop="88494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAACGAATTGA</genome_strand>
        <mrna_strand>CAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323055" ref_strand="+" ref_description="SGN-E323055 [cTOB-28-O13]">
      <seq>caaataaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttatgntatgtatggnatggtgtttaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87627" stop="88737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87927" g_stop="88437" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E323055" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87927" e_stop="88437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTA</genome_strand>
        <mrna_strand>CAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGNTATGTATGGNATGGTGTTTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341011" ref_strand="+" ref_description="SGN-E341011 [cTOF-5-P15]">
      <seq>aaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttatgttatgtatggctatggtgtttaattatacatactgttaccatgaattccaatttatgtgatactagtttgaacgaacgaattgaaaatgataaagttagatcagagcagaaatataaccagagagctttagtttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87632" stop="88850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87932" g_stop="88556" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E341011" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87932" e_stop="88556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGG-TATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATA-TAGTTTGAACGAACGAATTGAAAATGATAAAGTTAGATCAGAGCAGAAATATAACCAGAGAGCTTTAGTTTAAACAATTGTTC</genome_strand>
        <mrna_strand>AAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGCTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATACTAGTTTGAACGAACGAATTGAAAATGATAAAGTTAGATCAGAGCAGAAATATAACCAGAGAGCTTTAGTTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286431" ref_strand="+" ref_description="SGN-E286431 [cLES-11-P12]">
      <seq>aaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttatgttatgtatgggnatgggnnttaattataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87632" stop="88722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87932" g_stop="88448" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E286431" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87932" e_stop="88448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTAT-GGTATGGTGTTTAATTATACATACTGTT</genome_strand>
        <mrna_strand>AAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGGNATGGGNNTTAATTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291977" ref_strand="+" ref_description="SGN-E291977 [cLET-7-M6]">
      <seq>aaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcatatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgatgattaattgtgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87632" stop="88710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87932" g_stop="88419" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E291977" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87932" e_stop="88419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTA</genome_strand>
        <mrna_strand>AAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCATATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATGATTAATTGTGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281747" ref_strand="+" ref_description="SGN-E281747 [cLER-14-K1]">
      <seq>aaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcancgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgggttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttatggtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87632" stop="88716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87932" g_stop="88416" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E281747" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87932" e_stop="88416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTAT</genome_strand>
        <mrna_strand>AAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCANCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGGGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277976" ref_strand="+" ref_description="SGN-E277976 [cLER-4-I24]">
      <seq>aaaaatggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcaacgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87632" stop="88674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87932" g_stop="88374" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E277976" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87932" e_stop="88374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAAT</genome_strand>
        <mrna_strand>AAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAACGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712449" ref_strand="+" ref_description="SGN-E712449 [FB04DE09]">
      <seq>atggcgtccatagccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttatgttatgtatggtatggtgtttaattatacatactgttaccatgaattccaatttatgtgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87636" stop="88775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87936" g_stop="88485" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E712449" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87936" e_stop="88485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGA</genome_strand>
        <mrna_strand>ATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397291" ref_strand="+" ref_description="SGN-E397291 [TUS-45-E24]">
      <seq>ccggtgttagtataacaatcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttatgttatgtatggtatggtgtttaattatacatactgttaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87649" stop="88753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87949" g_stop="88453" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E397291" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87949" e_stop="88453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCAT</genome_strand>
        <mrna_strand>CCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284952" ref_strand="+" ref_description="SGN-E284952 [cLER-19-C3]">
      <seq>ttagtataacactcccaacagttttatccgattcacccaaaattcagcccttgaaattgcaaaccctatacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccgttgagcggcgagtgtaacgcggcatgggatgtggtggaagagaccagtgcatcatcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87655" stop="88604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87955" g_stop="88304" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E284952" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87955" e_stop="88304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGC</genome_strand>
        <mrna_strand>TTAGTATAACACTCCCAACAGTTTTATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTATACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGTTGAGCGGCGAGTGTAACGCGGCATGGGATGTGGTGGAAGAGACCAGTGCATCATCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339954" ref_strand="+" ref_description="SGN-E339954 [cTOF-3-L4]">
      <seq>atcccaacaatttcatccgattcacccaaaattcagcccttgaaattgcaaaccctaaacagcccatggaagaaatcaagtcaattgggttacaggaggatgatgtatgtagtggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttatgttatgtatggtatggtgtttaattatacatactgttaccatgaattccaatttatgtgatatagtttgaacgaacgaattgaaaatgataaagttagatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87666" stop="88827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87966" g_stop="88528" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E339954" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87966" e_stop="88528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAACGAATTGAAAATGATAAAGTTAGATCAGAGCAGAAATATAAC</genome_strand>
        <mrna_strand>ATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAACGAATTGAAAATGATAAAGTTAGATCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290686" ref_strand="+" ref_description="SGN-E290686 [cLET-10-M23]">
      <seq>tggtacccagagtagttccggataagaagctatctgatttagttgcggaaagtgttaaagaagctgaagaaacttgtgcggaggatccggtgagcggcgagtgtaaggcggcatgggatgtggtggaagagacgagtgcagcagcgagccatgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttatgttatgtatggtatggtgtttaattatacatactgttaccatgaattccaatttatgtgatatagtttgaacgaacgaattgaaaatgataaagttagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87778" stop="88811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88078" g_stop="88511" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E290686" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88078" e_stop="88511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAACGAATTGAAAATGATAAAGTTAGAT</genome_strand>
        <mrna_strand>TGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAACGAATTGAAAATGATAAAGTTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270580" ref_strand="+" ref_description="SGN-E270580 [cLEN-1-I11](-)">
      <seq>catgcgagggataagaagaaggaatcagatgtactggagaattattgcaaggataatccagaaactgatgaatgccgcacttacgataattaattatgatgatgattagtagcagctactcatgtcatgtcttgtgttcttttcaaatggtaatctgttttatcaaaacttaaatcttctcttatgttatgtatggtatggtgtttaattatacatactgttaccatgaattccaatttatgtgatatagtttgaacgaacgaattgaaaatgataaagttagatcagagcagaaatataaccagagagctttagtttaaacaattgttctctgctagtaatgctactaacaattttcagttaacatgaataaataaagcatcttttacaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="+" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87927" stop="88927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88227" g_stop="88627" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="+" ref_id="SGN-E270580" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88227" e_stop="88627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAACGAATTGAAAATGATAAAGTTAGATCAGAGCAGAAATATAACCAGAGAGCTTTAGTTTAAACAATTGTTCTCTGCTAGTAATGCTACTTTCAATTTTCAGTTTACATGAATAAATAAAGCATCTTTTACAACAACAAAAAA</genome_strand>
        <mrna_strand>CATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAACGAATTGAAAATGATAAAGTTAGATCAGAGCAGAAATATAACCAGAGAGCTTTAGTTTAAACAATTGTTCTCTGCTAGTAATGCTACTAACAATTTTCAGTTAACATGAATAAATAAAGCATCTTTTACAACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543581" ref_strand="+" ref_description="SGN-E543581 [TUS-65-H14](-)">
      <seq>aacgtgttgagggctcagcttgcagaattgactgaacggttgaattcactgaactcactcacccaattttgggctgatactactggatttcctgtggacattcctgaaattcccgacactttgctggagccatggcaactgccttgcccgattcaacctatcactgcttctgatatgttccagttttgagctctgctggtgtgatgatttacaagaatggaatagagattaagcgtattaagtatctagtttgatattagcaatgtagcttttgtttctgaatagtaatggttggttttggcctattatcgatatctgaatatctagtttgttgtttttagtatttgttcgactttatttagtctgtggatgttatatatgcatcttttggagtactatgaatgagatggcccttctcatttctatgaaaaaaaaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89628" stop="16127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89328" g_stop="88885" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E543581" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89328" e_stop="88885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCTGGTGTGATGATTTACAAGAATGGAATAGAGATTAAGCGTATTAAGTATCTAGTTTGATATTAGCAATGTAGCTTTTGTTTCTGAATAGTAATGGTTGGTTTTGGCCTATTATCGATATCTGAATATCTAGTTTGTTGTTTTTAGTATTTGTTCGACTTTATTTAGTCTGTGGATGTTATATATGCATCTTTTGGAGTACTATGAATGAGATGGCCCTTCTCATTTCTATGAAAAAATTGCTGTGTGT</genome_strand>
        <mrna_strand>AACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCTGGTGTGATGATTTACAAGAATGGAATAGAGATTAAGCGTATTAAGTATCTAGTTTGATATTAGCAATGTAGCTTTTGTTTCTGAATAGTAATGGTTGGTTTTGGCCTATTATCGATATCTGAATATCTAGTTTGTTGTTTTTAGTATTTGTTCGACTTTATTTAGTCTGTGGATGTTATATATGCATCTTTTGGAGTACTATGAATGAGATGGCCCTTCTCATTTCTATGAAAAAAAAAAAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543579" ref_strand="+" ref_description="SGN-E543579 [TUS-65-H13](-)">
      <seq>aacgtgttgagggctcagcttgcagaattgactgaacggttgaattcactgaactcactcacccaattttgggctgatactactggatttcctgtggacattcctgaaattcccgacactttgctggagccatggcaactgccttgcccgattcaacctatcactgcttctgatatgttccagttttgagctctgctggtgtgatgatttacaagaatggaatagagattaagcgtattaagtatctagtttgatattagcaatgtagcttttgtttctgaatagtaatggttggttttggcctattatcgatatctgaatatctagtttgttgtttttagtatttgttcgactttatttagtctgtggatgttatatatgcatcttttggagtactatgaatgagatggcccttctcatttcttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89628" stop="88596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89328" g_stop="88897" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="432" polyA_stop="443"/>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E543579" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89328" e_stop="88897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCTGGTGTGATGATTTACAAGAATGGAATAGAGATTAAGCGTATTAAGTATCTAGTTTGATATTAGCAATGTAGCTTTTGTTTCTGAATAGTAATGGTTGGTTTTGGCCTATTATCGATATCTGAATATCTAGTTTGTTGTTTTTAGTATTTGTTCGACTTTATTTAGTCTGTGGATGTTATATATGCATCTTTTGGAGTACTATGAATGAGATGGCCCTTCTCATTTCTATGAAAAA</genome_strand>
        <mrna_strand>AACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCTGGTGTGATGATTTACAAGAATGGAATAGAGATTAAGCGTATTAAGTATCTAGTTTGATATTAGCAATGTAGCTTTTGTTTCTGAATAGTAATGGTTGGTTTTGGCCTATTATCGATATCTGAATATCTAGTTTGTTGTTTTTAGTATTTGTTCGACTTTATTTAGTCTGTGGATGTTATATATGCATCTTTTGGAGTACTATGAATGAGATGGCCCTTCTCATTTCT-TGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543585" ref_strand="+" ref_description="SGN-E543585 [TUS-65-H16]">
      <seq>aacgtgttgagggctcagcttgcagaattgactgaacggttgaattcactgaactcactcacccaattttgggctgatactactggatttcctgtggacattcctgaaattcccgacactttgctggagccatggcaactgccttgcccgattcaacctatcactgcttctgatatgttccagttttgagctctgctggtgtgatgatttacaagaatggaatagagattaagcgtattaagtatctagtttgatattagcaatgtagcttttgtttctgaatagtaatggttggttttggcctattatcgatatctgaatatctagtttgttgtttttagtatttgttcgactttatttagtctgtggatgttatatatgcatcttttggagtactatgaatgagatggcccttctcatttctatganaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89628" stop="88596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89328" g_stop="88897" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="433" polyA_stop="444"/>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E543585" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89328" e_stop="88897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCTGGTGTGATGATTTACAAGAATGGAATAGAGATTAAGCGTATTAAGTATCTAGTTTGATATTAGCAATGTAGCTTTTGTTTCTGAATAGTAATGGTTGGTTTTGGCCTATTATCGATATCTGAATATCTAGTTTGTTGTTTTTAGTATTTGTTCGACTTTATTTAGTCTGTGGATGTTATATATGCATCTTTTGGAGTACTATGAATGAGATGGCCCTTCTCATTTCTATGAAAAA</genome_strand>
        <mrna_strand>AACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCTGGTGTGATGATTTACAAGAATGGAATAGAGATTAAGCGTATTAAGTATCTAGTTTGATATTAGCAATGTAGCTTTTGTTTCTGAATAGTAATGGTTGGTTTTGGCCTATTATCGATATCTGAATATCTAGTTTGTTGTTTTTAGTATTTGTTCGACTTTATTTAGTCTGTGGATGTTATATATGCATCTTTTGGAGTACTATGAATGAGATGGCCCTTCTCATTTCTATGANAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543663" ref_strand="+" ref_description="SGN-E543663 [TUS-65-J14](-)">
      <seq>aacgtgttgagggctcagcttgcagaattgactgaacggttgaattcactgaactcactcacccaattttgggctgatactactggatttcctgtggacattcctgaaattcccgacactttgctggagccatggcaactgccttgcccgattcaacctatcactgcttctgatatgttccagttttgagctctgctggtgtgatgatttacaagaatggaatagagattaagcgtattaagtatctagtttgatattagcaatgtagcttttgtttctgaatagtaatggttggttttggcctattatcgatatctgaatatctagtttgttgtttttagtatttgttcgactttatttagtctgtggatgttatatatgcatcttttggagtactatgaatgagatggcccttctcatttcttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89628" stop="88596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89328" g_stop="88897" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="432" polyA_stop="443"/>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E543663" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89328" e_stop="88897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCTGGTGTGATGATTTACAAGAATGGAATAGAGATTAAGCGTATTAAGTATCTAGTTTGATATTAGCAATGTAGCTTTTGTTTCTGAATAGTAATGGTTGGTTTTGGCCTATTATCGATATCTGAATATCTAGTTTGTTGTTTTTAGTATTTGTTCGACTTTATTTAGTCTGTGGATGTTATATATGCATCTTTTGGAGTACTATGAATGAGATGGCCCTTCTCATTTCTATGAAAAA</genome_strand>
        <mrna_strand>AACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCTGGTGTGATGATTTACAAGAATGGAATAGAGATTAAGCGTATTAAGTATCTAGTTTGATATTAGCAATGTAGCTTTTGTTTCTGAATAGTAATGGTTGGTTTTGGCCTATTATCGATATCTGAATATCTAGTTTGTTGTTTTTAGTATTTGTTCGACTTTATTTAGTCTGTGGATGTTATATATGCATCTTTTGGAGTACTATGAATGAGATGGCCCTTCTCATTTCT-TGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543580" ref_strand="+" ref_description="SGN-E543580 [TUS-65-H13]">
      <seq>aacgtgttgagggctcagcttgcagaattgactgaacggttgaattcactgaactcactcacccaattttgggctgatactactggatttcctgtggacattcctgaaattcccgacactttgctggagccatggcaactgccttgcccgattcaacctatcactgcttctgatatgttccagttttgagctctgctggtgtgatgatttacaagaatggaatagagattaagcgtattaagtatctagtttgatattagcaatgtagcttttgtttctgaatagtaatggttggttttggcctattatcgatatctgaatatctagtttgttgtttttagtatttgttcgactttatttagtctgtggatgttatatatgcatcttttggagtactatgaatgagatggcccttctcatttctatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89628" stop="88596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89328" g_stop="88897" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="433" polyA_stop="444"/>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E543580" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89328" e_stop="88897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCTGGTGTGATGATTTACAAGAATGGAATAGAGATTAAGCGTATTAAGTATCTAGTTTGATATTAGCAATGTAGCTTTTGTTTCTGAATAGTAATGGTTGGTTTTGGCCTATTATCGATATCTGAATATCTAGTTTGTTGTTTTTAGTATTTGTTCGACTTTATTTAGTCTGTGGATGTTATATATGCATCTTTTGGAGTACTATGAATGAGATGGCCCTTCTCATTTCTATGAAAAA</genome_strand>
        <mrna_strand>AACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCTGGTGTGATGATTTACAAGAATGGAATAGAGATTAAGCGTATTAAGTATCTAGTTTGATATTAGCAATGTAGCTTTTGTTTCTGAATAGTAATGGTTGGTTTTGGCCTATTATCGATATCTGAATATCTAGTTTGTTGTTTTTAGTATTTGTTCGACTTTATTTAGTCTGTGGATGTTATATATGCATCTTTTGGAGTACTATGAATGAGATGGCCCTTCTCATTTCTATGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543582" ref_strand="+" ref_description="SGN-E543582 [TUS-65-H14]">
      <seq>aacgtgttgagggctcagcttgcagaattgactgaacggttgaattcactgaactcactcacccaattttgggctgatactactggatttcctgtggacattcctgaaattcccgacactttgctggagccatggcaactgccttgcccgattcaacctatcactgcttctgatatgttccagttttgagctctgctggtgtgatgatttacaagaatggaatagagattaagcgtattaagtatctagtttgatattagcaatgtagcttttgtttctgaatagtaatggttggttttggcctattatcgatatctgaatatctagtttgttgtttttagtatttgttcgactttatttagtctgtggatgttatatatgcatcttttggagtactatgaatgagatggcccttctcatttctatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89628" stop="88596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89328" g_stop="88897" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="433" polyA_stop="444"/>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E543582" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89328" e_stop="88897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCTGGTGTGATGATTTACAAGAATGGAATAGAGATTAAGCGTATTAAGTATCTAGTTTGATATTAGCAATGTAGCTTTTGTTTCTGAATAGTAATGGTTGGTTTTGGCCTATTATCGATATCTGAATATCTAGTTTGTTGTTTTTAGTATTTGTTCGACTTTATTTAGTCTGTGGATGTTATATATGCATCTTTTGGAGTACTATGAATGAGATGGCCCTTCTCATTTCTATGAAAAA</genome_strand>
        <mrna_strand>AACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCTGGTGTGATGATTTACAAGAATGGAATAGAGATTAAGCGTATTAAGTATCTAGTTTGATATTAGCAATGTAGCTTTTGTTTCTGAATAGTAATGGTTGGTTTTGGCCTATTATCGATATCTGAATATCTAGTTTGTTGTTTTTAGTATTTGTTCGACTTTATTTAGTCTGTGGATGTTATATATGCATCTTTTGGAGTACTATGAATGAGATGGCCCTTCTCATTTCTATGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543664" ref_strand="+" ref_description="SGN-E543664 [TUS-65-J14]">
      <seq>aacgtgttgagggctcagcttgcagaattgactgaacggttgaattcactgaactcactcacccaattttgggctgatactactggatttcctgtggacattcctgaaattcccgacactttgctggagccatggcaactgccttgcccgattcaacctatcactgcttctgatatgttccagttttgagctctgctggtgtgatgatttacaagaatggaatagagattaagcgtattaagtatctagtttgatattagcaatgtagcttttgtttctgaatagtaatggttggttttggcctattatcgatatctgaatatctagtttgttgtttttagtatttgttcgactttatttagtctgtggatgttatatatgcatcttttggagtactatgaatgagatggcccttctcatttctatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89628" stop="88596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89328" g_stop="88897" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="433" polyA_stop="444"/>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E543664" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89328" e_stop="88897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCTGGTGTGATGATTTACAAGAATGGAATAGAGATTAAGCGTATTAAGTATCTAGTTTGATATTAGCAATGTAGCTTTTGTTTCTGAATAGTAATGGTTGGTTTTGGCCTATTATCGATATCTGAATATCTAGTTTGTTGTTTTTAGTATTTGTTCGACTTTATTTAGTCTGTGGATGTTATATATGCATCTTTTGGAGTACTATGAATGAGATGGCCCTTCTCATTTCTATGAAAAA</genome_strand>
        <mrna_strand>AACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCTGGTGTGATGATTTACAAGAATGGAATAGAGATTAAGCGTATTAAGTATCTAGTTTGATATTAGCAATGTAGCTTTTGTTTCTGAATAGTAATGGTTGGTTTTGGCCTATTATCGATATCTGAATATCTAGTTTGTTGTTTTTAGTATTTGTTCGACTTTATTTAGTCTGTGGATGTTATATATGCATCTTTTGGAGTACTATGAATGAGATGGCCCTTCTCATTTCTATGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304499" ref_strand="+" ref_description="SGN-E304499 [cLEX-11-C15]">
      <seq>acgtgttgagggctcagcttgcagaattgactgaacggttgaattcactgaactcactcacccaattttgggctgatactactggatttcctgtggacattcctgaaattcccgacactttgctggagccatggcaactgccttgcccgattcaacctatcactgcttctgatatgttccagttttgagctctgctggtgtgatgatttacaagaatggaatagagattaagcgtattaagtatctagtttgatattagcaatgtagcttttgtttctgaatagtaatggttggttttggcctattatcgatatctgaatatctagtttgttgtttttagtatttgttcgactttatttagtctgtggatgttatatatgcatcttttggagtactatgaatgagatggcccttctcatttctatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89627" stop="88596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89327" g_stop="88897" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="432" polyA_stop="443"/>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E304499" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89327" e_stop="88897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCTGGTGTGATGATTTACAAGAATGGAATAGAGATTAAGCGTATTAAGTATCTAGTTTGATATTAGCAATGTAGCTTTTGTTTCTGAATAGTAATGGTTGGTTTTGGCCTATTATCGATATCTGAATATCTAGTTTGTTGTTTTTAGTATTTGTTCGACTTTATTTAGTCTGTGGATGTTATATATGCATCTTTTGGAGTACTATGAATGAGATGGCCCTTCTCATTTCTATGAAAAA</genome_strand>
        <mrna_strand>ACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCTGGTGTGATGATTTACAAGAATGGAATAGAGATTAAGCGTATTAAGTATCTAGTTTGATATTAGCAATGTAGCTTTTGTTTCTGAATAGTAATGGTTGGTTTTGGCCTATTATCGATATCTGAATATCTAGTTTGTTGTTTTTAGTATTTGTTCGACTTTATTTAGTCTGTGGATGTTATATATGCATCTTTTGGAGTACTATGAATGAGATGGCCCTTCTCATTTCTATGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714229" ref_strand="+" ref_description="SGN-E714229 [FB10DE03]">
      <seq>gagacatgtcttcgactccgcacttggtgagttctggttcagatgcagaccagaggtatgcaaagttcgacgaaaggaaaaggaagagaatggaatccaaccgtgagtcggccaagaggtcacggatgaagaagcagcagcgtttggaggagttaagtagcgaaacaacacagctgcagaaccagaacagtatctgccgtgataagattgcttctgttgaaatgaactatcgttccattgatgcagagaacaacgtgttgagggctcagcttgcagaattgactgaacggttgaattcactgaactcactcacccaattttgggctgatactactggatttcctgtggacattcctgaaattcccgacactttgctggagccatggcaactgccttgcccgattcaacctatcactgcttctgatatgttccagttttgagctctgctggtgtgatgatttacaagaatggaatagagattaagcgtattaagtatctagtttgatattagcaatgtagcttttgtttctgaatagtaatggttggttttggcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89879" stop="88724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89579" g_stop="89015" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E714229" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89579" e_stop="89015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACATGTCTTCGACTCCGCACTTGGTGAGTTCTGGTTCAGATGCAGACCAGAGGTATGCAAAGTTCGACGAAAGGAAAAGGAAGAGAATGGAATCCAACCGTGAGTCGGCCAAGAGGTCACGGATGAAGAAGCAGCAGCGTTTGGAGGAGTTAAGTAGCGAAACAACACAGCTGCAGAACCAGAACAGTATCTGCCGTGATAAGATTGCTTCTGTTGAAATGAACTATCGTTCCATTGATGCAGAGAACAACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCTGGTGTGATGATTTACAAGAATGGAATAGAGATTAAGCGTATTAAGTATCTAGTTTGATATTAGCAATGTAGCTTTTGTTTCTGAATAGTAATGGTTGGTTTTGGCCTATTATCGATA</genome_strand>
        <mrna_strand>GAGACATGTCTTCGACTCCGCACTTGGTGAGTTCTGGTTCAGATGCAGACCAGAGGTATGCAAAGTTCGACGAAAGGAAAAGGAAGAGAATGGAATCCAACCGTGAGTCGGCCAAGAGGTCACGGATGAAGAAGCAGCAGCGTTTGGAGGAGTTAAGTAGCGAAACAACACAGCTGCAGAACCAGAACAGTATCTGCCGTGATAAGATTGCTTCTGTTGAAATGAACTATCGTTCCATTGATGCAGAGAACAACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCTGGTGTGATGATTTACAAGAATGGAATAGAGATTAAGCGTATTAAGTATCTAGTTTGATATTAGCAATGTAGCTTTTGTTTCTGAATAGTAATGGTTGGTTTTGGCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714656" ref_strand="+" ref_description="SGN-E714656 [FB12AC08]">
      <seq>gagacatgtcttcgactccgcacttggtgagttctggttcagatgcagaccagaggtatgcaaagttcgacgaaaggaaaaggaagagaatggaatccaaccgtgagtcggccaagaggtcacggatgaagaagcagcagcgtttggaggagttaagtagcgaaacaacacagctgcagaaccagaacagtatctgccgtgataagattgcttctgttgaaatgaactatcgttccattgatgcagagaacaacgtgttgagggctcagcttgcagaattgactgaacggttgaattcactgaactcactcacccaattttgggctgatactactggatttcctgtggacattcctgaaattcccgacactttgctggagccatggcaactgccttgcccgattcaacctatcactgcttctgatatgttccagttttgagctctgctggtgtgatgatttacaagaatggaatagagattaagcgtattaagtatctagtttgatattagcaatgtagcttttgtttctgaatagtaatggttggttttggcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89879" stop="88724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89579" g_stop="89015" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E714656" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89579" e_stop="89015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACATGTCTTCGACTCCGCACTTGGTGAGTTCTGGTTCAGATGCAGACCAGAGGTATGCAAAGTTCGACGAAAGGAAAAGGAAGAGAATGGAATCCAACCGTGAGTCGGCCAAGAGGTCACGGATGAAGAAGCAGCAGCGTTTGGAGGAGTTAAGTAGCGAAACAACACAGCTGCAGAACCAGAACAGTATCTGCCGTGATAAGATTGCTTCTGTTGAAATGAACTATCGTTCCATTGATGCAGAGAACAACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCTGGTGTGATGATTTACAAGAATGGAATAGAGATTAAGCGTATTAAGTATCTAGTTTGATATTAGCAATGTAGCTTTTGTTTCTGAATAGTAATGGTTGGTTTTGGCCTATTATCGATA</genome_strand>
        <mrna_strand>GAGACATGTCTTCGACTCCGCACTTGGTGAGTTCTGGTTCAGATGCAGACCAGAGGTATGCAAAGTTCGACGAAAGGAAAAGGAAGAGAATGGAATCCAACCGTGAGTCGGCCAAGAGGTCACGGATGAAGAAGCAGCAGCGTTTGGAGGAGTTAAGTAGCGAAACAACACAGCTGCAGAACCAGAACAGTATCTGCCGTGATAAGATTGCTTCTGTTGAAATGAACTATCGTTCCATTGATGCAGAGAACAACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCTGGTGTGATGATTTACAAGAATGGAATAGAGATTAAGCGTATTAAGTATCTAGTTTGATATTAGCAATGTAGCTTTTGTTTCTGAATAGTAATGGTTGGTTTTGGCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403446" ref_strand="+" ref_description="SGN-E403446 [PPC-10-L9]">
      <seq>ctgtctggatttggatattctactcaggaaactattggtttctttgaagattgattgcggtttcgtacaaagttccaatgtttaattcttagttttaaaatttcttcatgtcattctctattcgtgtgcgtcgagttcggattctgcattctttctcagtagtctttctttactggttctacgtgttttcatgaactagcgctcatcattgtctttttccaatttgatttagaaattccatagccacactatcaaaagtttggtgctttaacaaattatacatagttacctgttattccatttttttatcattcatccaatctgcctgagagacatggcttcgactccgcaactggtgagttctggttcagatgcagaccagaggtatgcaaagtttgacgaaagaaaaaggaagagaatggaatccaaccgtgagtcggccaagaggtcacggatgaagaagcagcagcgtttgaaggagttaagtagcgaaacaacacagctgcagaaccagaacagtatctgccacgataagattgattctgttgaaaggaactatcgtgccattgatgcagagaacaacgtgctgagggctcagcttgcagaattgactgaacggttgaattcattgaactcactcacccaattttgggctgatgctactggatttcctgtggacattcctgaaattnccgacagtttgctggagccatggcaactgccttgcccaattcacctatcactgcttctgatatgttccagttttgagctgctggtctgatgatttacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90213" stop="88832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89913" g_stop="89116" g_length="798"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E403446" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89913" e_stop="89116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTGGATTTTGGATATTCTACTCAGGAAATTATTTGGTTTCTTTGAAGACTGGTTGGGGTCTCTTACAAAGTTCCAATGTTTGATTCTTAGTTTCAAAATTTCTTCATGTCATTCTCTATTCGCGTGCGACGAGTTCGGATTCTGCATTCTTTCTCAGTAGTCTTTCTTTACTGGTTCTACGTGTTTTCATGAACTAGAGCCCTCATCATTTTCTTGTTCCAGTTTAATTTACAAATTCCATAGCCACACTATCAAAAGTTTGGTGCTTTAACAAATTATACATAGTTCCCTGTTATTCCATTTTTTAAATCATTCATCCAATCTGCCTGAGAGACATGTCTTCGACTCCGCACTTGGTGAGTTCTGGTTCAGATGCAGACCAGAGGTATGCAAAGTTCGACGAAAGGAAAAGGAAGAGAATGGAATCCAACCGTGAGTCGGCCAAGAGGTCACGGATGAAGAAGCAGCAGCGTTTGGAGGAGTTAAGTAGCGAAACAACACAGCTGCAGAACCAGAACAGTATCTGCCGTGATAAGATTGCTTCTGTTGAAATGAACTATCGTTCCATTGATGCAGAGAACAACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCTGGTGTGATGATTTACA</genome_strand>
        <mrna_strand>CTGTCTGGA-TTTGGATATTCTACTCAGGAAACTA-TTGGTTTCTTTGAAGATTGATTGCGGTTTCGTACAAAGTTCCAATGTTTAATTCTTAGTTTTAAAATTTCTTCATGTCATTCTCTATTCGTGTGCGTCGAGTTCGGATTCTGCATTCTTTCTCAGTAGTCTTTCTTTACTGGTTCTACGTGTTTTCATGAACT--AGCGCTCATCATTGTCTTTTTCCAATTTGATTTAGAAATTCCATAGCCACACTATCAAAAGTTTGGTGCTTTAACAAATTATACATAGTTACCTGTTATTCCATTTTTT-TATCATTCATCCAATCTGCCTGAGAGACATGGCTTCGACTCCGCAACTGGTGAGTTCTGGTTCAGATGCAGACCAGAGGTATGCAAAGTTTGACGAAAGAAAAAGGAAGAGAATGGAATCCAACCGTGAGTCGGCCAAGAGGTCACGGATGAAGAAGCAGCAGCGTTTGAAGGAGTTAAGTAGCGAAACAACACAGCTGCAGAACCAGAACAGTATCTGCCACGATAAGATTGATTCTGTTGAAAGGAACTATCGTGCCATTGATGCAGAGAACAACGTGCTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCATTGAACTCACTCACCCAATTTTGGGCTGATGCTACTGGATTTCCTGTGGACATTCCTGAAATTNCCGACAGTTTGCTGGAGCCATGGCAACTGCCTTGCCCAATTC-ACCTATCACTGCTTCTGATATGTTCCAGTTTTGAG--CTGCTGGTCTGATGATTTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727238" ref_strand="+" ref_description="SGN-E727238 [LA14AE07]">
      <seq>cttccctctttgcaaagatcatttttgtgaatactttcatttgctgtttggattttggatattctactcaggaaattatttggtttctttgaagactggttggggtctcttacaaagttccaatgtttgattcttagtttcaaaatttcttcatgtcattctctattcgcgtgcgacgagttcggattctgcattctttctcagtagtctttctttactggttctacgtgttttcatgaactagagccctcatcattttcttgttccagtttaatttacaaattccatagccacactatcaaaagtttggtgctttaacaaattatacatagttccctgttattccattttttaaatcattcatccaatctgcctgagagacatgtcttcgactccgcacttggtgagttctggttcagatgcagaccagaggtatgcaaagttcgacgaaaggaaaaggaagagaatggaatccaaccgtgagtcggccaagaggtcacggatgaagaagcagcagcgtttggaggagttaagtagcgaaacaacacagctgcagaaccagaacagtatctgccgtgataagattgcttctgttgaaatgaactatcgttccattgatgcagagaacaacgtgttgagggctcagcttgcagaattgactgaacggttgaattcactgaactcactcacccaattttgggctgatactactggatttcctgtggacattcctgaaattcccgacactttgctggagccatggcaactgccttgcccgattcaacctatcactgcttctgatatgttccagttttgagctctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90241" stop="88832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89939" g_stop="89132" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="825" r_length="808" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E727238" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89939" e_stop="89132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTTTTGTGAATACTTTCATTTGCTGTTTGGATTTTGGATATTCTACTCAGGAAATTATTTGGTTTCTTTGAAGACTGGTTGGGGTCTCTTACAAAGTTCCAATGTTTGATTCTTAGTTTCAAAATTTCTTCATGTCATTCTCTATTCGCGTGCGACGAGTTCGGATTCTGCATTCTTTCTCAGTAGTCTTTCTTTACTGGTTCTACGTGTTTTCATGAACTAGAGCCCTCATCATTTTCTTGTTCCAGTTTAATTTACAAATTCCATAGCCACACTATCAAAAGTTTGGTGCTTTAACAAATTATACATAGTTCCCTGTTATTCCATTTTTTAAATCATTCATCCAATCTGCCTGAGAGACATGTCTTCGACTCCGCACTTGGTGAGTTCTGGTTCAGATGCAGACCAGAGGTATGCAAAGTTCGACGAAAGGAAAAGGAAGAGAATGGAATCCAACCGTGAGTCGGCCAAGAGGTCACGGATGAAGAAGCAGCAGCGTTTGGAGGAGTTAAGTAGCGAAACAACACAGCTGCAGAACCAGAACAGTATCTGCCGTGATAAGATTGCTTCTGTTGAAATGAACTATCGTTCCATTGATGCAGAGAACAACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCT</genome_strand>
        <mrna_strand>ATCATTTTTGTGAATACTTTCATTTGCTGTTTGGATTTTGGATATTCTACTCAGGAAATTATTTGGTTTCTTTGAAGACTGGTTGGGGTCTCTTACAAAGTTCCAATGTTTGATTCTTAGTTTCAAAATTTCTTCATGTCATTCTCTATTCGCGTGCGACGAGTTCGGATTCTGCATTCTTTCTCAGTAGTCTTTCTTTACTGGTTCTACGTGTTTTCATGAACTAGAGCCCTCATCATTTTCTTGTTCCAGTTTAATTTACAAATTCCATAGCCACACTATCAAAAGTTTGGTGCTTTAACAAATTATACATAGTTCCCTGTTATTCCATTTTTTAAATCATTCATCCAATCTGCCTGAGAGACATGTCTTCGACTCCGCACTTGGTGAGTTCTGGTTCAGATGCAGACCAGAGGTATGCAAAGTTCGACGAAAGGAAAAGGAAGAGAATGGAATCCAACCGTGAGTCGGCCAAGAGGTCACGGATGAAGAAGCAGCAGCGTTTGGAGGAGTTAAGTAGCGAAACAACACAGCTGCAGAACCAGAACAGTATCTGCCGTGATAAGATTGCTTCTGTTGAAATGAACTATCGTTCCATTGATGCAGAGAACAACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731110" ref_strand="+" ref_description="SGN-E731110 [LA26AG01]">
      <seq>cgttcaacaacttccctctttgcaagatcatttttgtgaatactttcatttgctgtttggattttggatattctactcaggaaattatttggtttctttgaagactggttggggtctcttacaaagttccaatgtttgattcttagtttcaaaatttcttcatgtcattctctattcgcgtgcgacgagttcggattctgcattctttctcagtagtctttctttactggttctacgtgttttcatgaactagagccctcatcattttcttgttccagtttaatttacaaattccatagccacactatcaaaagtttggtgctttaacaaattatacatagttccctgttattccattttttaaatcattcatccaatctgcctgagagacatgtcttcgactccgcacttggtgagttctggttcagatgcagaccagaggtatgcaaagttcgacgaaaggaaaaggaagagaatggaatccaaccgtgagtcggccaagaggtcacggatgaagaagcagcagcgtttggaggagttaagtagcgaaacaacacagctgcagaaccagaacagtatctgccgtgataagattgcttctgttgaaatgaactatcgttccattgatgcagagaacaacgtgttgagggctcagcttgcagaattgactgaacggttgaattcactgaactcactcacccaattttgggctgatactactggatttcctgtggacattcctgaaattcccgacacttttctggagccatggcaactgccttgcccgattcaacctatcactgcttctgatatgttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90245" stop="88848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89939" g_stop="89148" g_length="792"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="818" r_length="792" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E731110" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89939" e_stop="89148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTTTTGTGAATACTTTCATTTGCTGTTTGGATTTTGGATATTCTACTCAGGAAATTATTTGGTTTCTTTGAAGACTGGTTGGGGTCTCTTACAAAGTTCCAATGTTTGATTCTTAGTTTCAAAATTTCTTCATGTCATTCTCTATTCGCGTGCGACGAGTTCGGATTCTGCATTCTTTCTCAGTAGTCTTTCTTTACTGGTTCTACGTGTTTTCATGAACTAGAGCCCTCATCATTTTCTTGTTCCAGTTTAATTTACAAATTCCATAGCCACACTATCAAAAGTTTGGTGCTTTAACAAATTATACATAGTTCCCTGTTATTCCATTTTTTAAATCATTCATCCAATCTGCCTGAGAGACATGTCTTCGACTCCGCACTTGGTGAGTTCTGGTTCAGATGCAGACCAGAGGTATGCAAAGTTCGACGAAAGGAAAAGGAAGAGAATGGAATCCAACCGTGAGTCGGCCAAGAGGTCACGGATGAAGAAGCAGCAGCGTTTGGAGGAGTTAAGTAGCGAAACAACACAGCTGCAGAACCAGAACAGTATCTGCCGTGATAAGATTGCTTCTGTTGAAATGAACTATCGTTCCATTGATGCAGAGAACAACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCC</genome_strand>
        <mrna_strand>ATCATTTTTGTGAATACTTTCATTTGCTGTTTGGATTTTGGATATTCTACTCAGGAAATTATTTGGTTTCTTTGAAGACTGGTTGGGGTCTCTTACAAAGTTCCAATGTTTGATTCTTAGTTTCAAAATTTCTTCATGTCATTCTCTATTCGCGTGCGACGAGTTCGGATTCTGCATTCTTTCTCAGTAGTCTTTCTTTACTGGTTCTACGTGTTTTCATGAACTAGAGCCCTCATCATTTTCTTGTTCCAGTTTAATTTACAAATTCCATAGCCACACTATCAAAAGTTTGGTGCTTTAACAAATTATACATAGTTCCCTGTTATTCCATTTTTTAAATCATTCATCCAATCTGCCTGAGAGACATGTCTTCGACTCCGCACTTGGTGAGTTCTGGTTCAGATGCAGACCAGAGGTATGCAAAGTTCGACGAAAGGAAAAGGAAGAGAATGGAATCCAACCGTGAGTCGGCCAAGAGGTCACGGATGAAGAAGCAGCAGCGTTTGGAGGAGTTAAGTAGCGAAACAACACAGCTGCAGAACCAGAACAGTATCTGCCGTGATAAGATTGCTTCTGTTGAAATGAACTATCGTTCCATTGATGCAGAGAACAACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTTCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720408" ref_strand="+" ref_description="SGN-E720408 [FC10CH11]">
      <seq>acttccctctttgcaaagatcatttttgtgaaccctttcatttgctgtttggattttggatattctactcaggaaattatttggtttctttgaagactggttggggtctcttacaaagttccaatgtttgattcttagtttcaaaatttcttcatgtcattctctattcgcgtgcgacgagttcggattctgcattctttctcagtagtctttctttactggttctacgtgttttcatgaactagagccctcatcattttcttgttccagtttaatttacaaattccatagccacactatcaaaagtttggtgctttaacaaattatacatagttccctgttattccattttttaaatcattcatccaatctgcctgagagacatgtcttcgactccgcacttggtgagttctggttcagatgcagaccagaggtatgcaaagttcgacgaaaggaaaaggaagagaatggaatccaaccgtgagtcggccaagaggtcacggatgaagaagcagcagcgtttggaggagttaagtagcgaaacaacacagctgcagaaccagaacagtatctgccgtgataagattgcttctgttgaaatgaactatcgttccattgatgcagagaacaacgtgttgagggctcagcttgcagaattgactgaacggttgaattcactgaactcactcacccaattttgggctgatactactggatttcctgtggacattcctgaaattcccgacactttgctggagccatggcaactgccttgcccgattcaacctatcactgcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90241" stop="88857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89939" g_stop="89157" g_length="783"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="801" r_length="783" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E720408" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89939" e_stop="89157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTTTTGTGAATACTTTCATTTGCTGTTTGGATTTTGGATATTCTACTCAGGAAATTATTTGGTTTCTTTGAAGACTGGTTGGGGTCTCTTACAAAGTTCCAATGTTTGATTCTTAGTTTCAAAATTTCTTCATGTCATTCTCTATTCGCGTGCGACGAGTTCGGATTCTGCATTCTTTCTCAGTAGTCTTTCTTTACTGGTTCTACGTGTTTTCATGAACTAGAGCCCTCATCATTTTCTTGTTCCAGTTTAATTTACAAATTCCATAGCCACACTATCAAAAGTTTGGTGCTTTAACAAATTATACATAGTTCCCTGTTATTCCATTTTTTAAATCATTCATCCAATCTGCCTGAGAGACATGTCTTCGACTCCGCACTTGGTGAGTTCTGGTTCAGATGCAGACCAGAGGTATGCAAAGTTCGACGAAAGGAAAAGGAAGAGAATGGAATCCAACCGTGAGTCGGCCAAGAGGTCACGGATGAAGAAGCAGCAGCGTTTGGAGGAGTTAAGTAGCGAAACAACACAGCTGCAGAACCAGAACAGTATCTGCCGTGATAAGATTGCTTCTGTTGAAATGAACTATCGTTCCATTGATGCAGAGAACAACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTG</genome_strand>
        <mrna_strand>ATCATTTTTGTGAACCCTTTCATTTGCTGTTTGGATTTTGGATATTCTACTCAGGAAATTATTTGGTTTCTTTGAAGACTGGTTGGGGTCTCTTACAAAGTTCCAATGTTTGATTCTTAGTTTCAAAATTTCTTCATGTCATTCTCTATTCGCGTGCGACGAGTTCGGATTCTGCATTCTTTCTCAGTAGTCTTTCTTTACTGGTTCTACGTGTTTTCATGAACTAGAGCCCTCATCATTTTCTTGTTCCAGTTTAATTTACAAATTCCATAGCCACACTATCAAAAGTTTGGTGCTTTAACAAATTATACATAGTTCCCTGTTATTCCATTTTTTAAATCATTCATCCAATCTGCCTGAGAGACATGTCTTCGACTCCGCACTTGGTGAGTTCTGGTTCAGATGCAGACCAGAGGTATGCAAAGTTCGACGAAAGGAAAAGGAAGAGAATGGAATCCAACCGTGAGTCGGCCAAGAGGTCACGGATGAAGAAGCAGCAGCGTTTGGAGGAGTTAAGTAGCGAAACAACACAGCTGCAGAACCAGAACAGTATCTGCCGTGATAAGATTGCTTCTGTTGAAATGAACTATCGTTCCATTGATGCAGAGAACAACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615799" ref_strand="+" ref_description="SGN-E615799 [65601]">
      <seq>cttccctctttgcaaagatcttttttgtgaatactgtcacttgctgtctggatttggatattctacaaaagaaatttttggtttctggaagattgattggggtttcttacaaagttccaatgcttgattcttagtttcaaaatttcttcatgtcattctctactcgcgtgcgtcgagttcggattctgcattctttctcagtagtttttctttactggttctacgtgttttcatgaactagccctcatcattgtctttttccaatttgatttagaaattccatagccacactatcaaaagtttggtgcttgaacaaattatacatagttacctattattccatttttttatcattcatccaatctgcctgagagacatggcttcgactccgcaattggtgagttctggttcagatgcagaccagaggtatgcaaagtttgacgaacaggacaaaggaagcagaatggaatccaaccgtgagtctgccaagaggtcacggatgaagaagcagcagcgtttggaggagttaagtagtgaaacaacacagctgcagaaccagaacagtatctggcacaataagattgattctgttgaaaggaactatcgtgccattgatgcagagaacaatgtgctgagggctcagctggcagaattgaactgaacggttgaattcactgaactcattcaaccaatttggggctgatactactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90241" stop="88944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89939" g_stop="89244" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="711" r_length="694" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E615799" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89939" e_stop="89244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTTTTGTGAATACTTTCATTTGCTGTTTGGATTTTGGATATTCTACTCAGGAAATTATTTGGTTTCTTTGAAGACTGGTTGGGGTCTCTTACAAAGTTCCAATGTTTGATTCTTAGTTTCAAAATTTCTTCATGTCATTCTCTATTCGCGTGCGACGAGTTCGGATTCTGCATTCTTTCTCAGTAGTCTTTCTTTACTGGTTCTACGTGTTTTCATGAACTAGAGCCCTCATCATTTTCTTGTTCCAGTTTAATTTACAAATTCCATAGCCACACTATCAAAAGTTTGGTGCTTTAACAAATTATACATAGTTCCCTGTTATTCCATTTTTTAAATCATTCATCCAATCTGCCTGAGAGACATGTCTTCGACTCCGCACTTGGTGAGTTCTGGTTCAGATGCAGACCAGAGGTATGCAAAGTTCGACGAA-AGGA-AAAGGAAG-AGAATGGAATCCAACCGTGAGTCGGCCAAGAGGTCACGGATGAAGAAGCAGCAGCGTTTGGAGGAGTTAAGTAGCGAAACAACACAGCTGCAGAACCAGAACAGTATCTGCCGTGATAAGATTGCTTCTGTTGAAATGAACTATCGTTCCATTGATGCAGAGAACAACGTGTTGAGGGCTCAGCTTGCAGAATTG-ACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTG</genome_strand>
        <mrna_strand>ATCTTTTTTGTGAATACTGTCACTTGCTGTCTGGA-TTTGGATATTCTACAAAAGAAATT-TTTGGTTTC-TGGAAGATTGATTGGGGTTTCTTACAAAGTTCCAATGCTTGATTCTTAGTTTCAAAATTTCTTCATGTCATTCTCTACTCGCGTGCGTCGAGTTCGGATTCTGCATTCTTTCTCAGTAGTTTTTCTTTACTGGTTCTACGTGTTTTCATGAACT--AGCCCTCATCATTGTCTTTTTCCAATTTGATTTAGAAATTCCATAGCCACACTATCAAAAGTTTGGTGCTTGAACAAATTATACATAGTTACCTATTATTCCATTTTTT-TATCATTCATCCAATCTGCCTGAGAGACATGGCTTCGACTCCGCAATTGGTGAGTTCTGGTTCAGATGCAGACCAGAGGTATGCAAAGTTTGACGAACAGGACAAAGGAAGCAGAATGGAATCCAACCGTGAGTCTGCCAAGAGGTCACGGATGAAGAAGCAGCAGCGTTTGGAGGAGTTAAGTAGTGAAACAACACAGCTGCAGAACCAGAACAGTATCTGGCACAATAAGATTGATTCTGTTGAAAGGAACTATCGTGCCATTGATGCAGAGAACAATGTGCTGAGGGCTCAGCTGGCAGAATTGAACTGAACGGTTGAATTCACTGAACTCATTCAACCAATTTGGGGCTGATACTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605659" ref_strand="+" ref_description="SGN-E605659 [21584]">
      <seq>cacttccctctttgcaagatcttttttgtgaatactttcacttgctgtctggatgtggatattctacaaaagaaattttgggtttctggaagattgattggggtttcttacaaagttccaatgtttgattcttagtttcaaaatttcttcatgtcattctctactcgcgtgcgtaagttcggattctgcattctttctcagtagtttttctttactggttctacgtgttttcatgaactagccctcatcattgtcgtttttccaatttgatttagaaattccatagccacactatcaaaagtttggtgcttgaacaaattatacattacctattattccatttttttatcatcatccaatctgcctgagagacatggcttcgactctgcaattggtgagttctggttcagatgcagaccagaggtatgctaagtttgacgaaaggaaaaggaagagaatggaatccaaccgtgagtctgccaagaggtcaacggatgaagaagcagcagcgtttggaggagttaagtagcgaaacaacacagctgcagaaccagaacagtatctgctacaataagattgattctgttgaaaggaactatcgtgccattgatgcagagaacaattgtgctgagggctcagctggcagaattgactgaaacggttgaattcattgaatcactcacccaatttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90245" stop="89027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89939" g_stop="89258" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="692" r_length="674" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E605659" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E605659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89939" e_stop="89258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTTTTGTGAATACTTTCATTTGCTGTTTGGATTTTGGATATTCTACTCAGGAAATTATTTGGTTTCTTTGAAGACTGGTTGGGGTCTCTTACAAAGTTCCAATGTTTGATTCTTAGTTTCAAAATTTCTTCATGTCATTCTCTATTCGCGTGCGACGAGTTCGGATTCTGCATTCTTTCTCAGTAGTCTTTCTTTACTGGTTCTACGTGTTTTCATGAACTAGAGCCCTCATCATTTTC-TTGTTCCAGTTTAATTTACAAATTCCATAGCCACACTATCAAAAGTTTGGTGCTTTAACAAATTATACATAGTTCCCTGTTATTCCATTTTTTAAATCATTCATCCAATCTGCCTGAGAGACATGTCTTCGACTCCGCACTTGGTGAGTTCTGGTTCAGATGCAGACCAGAGGTATGCAAAGTTCGACGAAAGGAAAAGGAAGAGAATGGAATCCAACCGTGAGTCGGCCAAGAGGTC-ACGGATGAAGAAGCAGCAGCGTTTGGAGGAGTTAAGTAGCGAAACAACACAGCTGCAGAACCAGAACAGTATCTGCCGTGATAAGATTGCTTCTGTTGAAATGAACTATCGTTCCATTGATGCAGAGAACAA-CGTGTTGAGGGCTCAGCTTGCAGAATTGACTG-AACGGTTGAATTCACTGAACTCACTCACCCAATTTTG</genome_strand>
        <mrna_strand>ATCTTTTTTGTGAATACTTTCACTTGCTGTCTGGA-TGTGGATATTCTACAAAAGAAATT-TTGGGTTTC-TGGAAGATTGATTGGGGTTTCTTACAAAGTTCCAATGTTTGATTCTTAGTTTCAAAATTTCTTCATGTCATTCTCTACTCGCGTGCG-TAAGTTCGGATTCTGCATTCTTTCTCAGTAGTTTTTCTTTACTGGTTCTACGTGTTTTCATGAACT--AGCCCTCATCATTGTCGTTTTTCCAATTTGATTTAGAAATTCCATAGCCACACTATCAAAAGTTTGGTGCTTGAACAAATTATAC--A-TTACCTATTATTCCATTTTTT-TATCA-TCATCCAATCTGCCTGAGAGACATGGCTTCGACTCTGCAATTGGTGAGTTCTGGTTCAGATGCAGACCAGAGGTATGCTAAGTTTGACGAAAGGAAAAGGAAGAGAATGGAATCCAACCGTGAGTCTGCCAAGAGGTCAACGGATGAAGAAGCAGCAGCGTTTGGAGGAGTTAAGTAGCGAAACAACACAGCTGCAGAACCAGAACAGTATCTGCTACAATAAGATTGATTCTGTTGAAAGGAACTATCGTGCCATTGATGCAGAGAACAATTGTGCTGAGGGCTCAGCTGGCAGAATTGACTGAAACGGTTGAATTCATTGAA-TCACTCACCCAATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610816" ref_strand="+" ref_description="SGN-E610816 [57985]">
      <seq>ccctctttgcaaagatcttttttgtgaatactttcacttgctgtctggatttggatattctacaaaagaaatttttggtttctggaagattgattggggtttcttacaaagttccaatgtttgattcttagtttcaaaatttcttcatgtcattctctactcgcgtgcgtagagttcggattctgcattctttctcagtagtttttctttactggttctacgtgttttcatgaactagccctcatcattgtctttttccaatttgatttagaaattccatagccacactatcaaaagtttggtgcttgaacaaattatacattacctattattccatttttttatcatcatccaatctgcctgagagacatggcttcgactctgcaattggtgagttctggttcagatgcagaccagaggtatgctaagtttgacgaaaggaaaaggaagagaatggaatccaaccgtgagtctgccaagaggtcacggatgaagaagcagcagcgtttggaggagttaagtagcgaaacaacacagctgcagaaccagaacagtatctgctacaataagattgattctgttgaaaggaactatcgtgccattgatgcagagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90241" stop="89030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89939" g_stop="89330" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="614" r_length="600" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E610816" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E610816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89939" e_stop="89330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTTTTGTGAATACTTTCATTTGCTGTTTGGATTTTGGATATTCTACTCAGGAAATTATTTGGTTTCTTTGAAGACTGGTTGGGGTCTCTTACAAAGTTCCAATGTTTGATTCTTAGTTTCAAAATTTCTTCATGTCATTCTCTATTCGCGTGCGACGAGTTCGGATTCTGCATTCTTTCTCAGTAGTCTTTCTTTACTGGTTCTACGTGTTTTCATGAACTAGAGCCCTCATCATTTTCTTGTTCCAGTTTAATTTACAAATTCCATAGCCACACTATCAAAAGTTTGGTGCTTTAACAAATTATACATAGTTCCCTGTTATTCCATTTTTTAAATCATTCATCCAATCTGCCTGAGAGACATGTCTTCGACTCCGCACTTGGTGAGTTCTGGTTCAGATGCAGACCAGAGGTATGCAAAGTTCGACGAAAGGAAAAGGAAGAGAATGGAATCCAACCGTGAGTCGGCCAAGAGGTCACGGATGAAGAAGCAGCAGCGTTTGGAGGAGTTAAGTAGCGAAACAACACAGCTGCAGAACCAGAACAGTATCTGCCGTGATAAGATTGCTTCTGTTGAAATGAACTATCGTTCCATTGATGCAGAGAA</genome_strand>
        <mrna_strand>ATCTTTTTTGTGAATACTTTCACTTGCTGTCTGGA-TTTGGATATTCTACAAAAGAAATT-TTTGGTTTC-TGGAAGATTGATTGGGGTTTCTTACAAAGTTCCAATGTTTGATTCTTAGTTTCAAAATTTCTTCATGTCATTCTCTACTCGCGTGCGTAGAGTTCGGATTCTGCATTCTTTCTCAGTAGTTTTTCTTTACTGGTTCTACGTGTTTTCATGAACT--AGCCCTCATCATTGTCTTTTTCCAATTTGATTTAGAAATTCCATAGCCACACTATCAAAAGTTTGGTGCTTGAACAAATTATAC--A-TTACCTATTATTCCATTTTTT-TATCA-TCATCCAATCTGCCTGAGAGACATGGCTTCGACTCTGCAATTGGTGAGTTCTGGTTCAGATGCAGACCAGAGGTATGCTAAGTTTGACGAAAGGAAAAGGAAGAGAATGGAATCCAACCGTGAGTCTGCCAAGAGGTCACGGATGAAGAAGCAGCAGCGTTTGGAGGAGTTAAGTAGCGAAACAACACAGCTGCAGAACCAGAACAGTATCTGCTACAATAAGATTGATTCTGTTGAAAGGAACTATCGTGCCATTGATGCAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341056" ref_strand="+" ref_description="SGN-E341056 [cTOE-22-I9]">
      <seq>cttccctctttgcaaagatcatttttgtgaatactttcatttgctgtttggattttggatattctactcaggaaattatttggtttctttgaagactggttggggtctcttacaaagttccaatgtttgattcttagtttcaaaatttcttcatgtcattctctattcgcgtgcgacgagttcggattctgcattctttctcagtagtctttctttactggttctacgtgttttcatgaactagagccctcatcattttcttgttccagtttaatttacaaattccataaccacactatcaaaagtttggtgctttaacaaattatacatagttccctgttattccattttttaaatcattcatccaatctgcctgagagacatgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90241" stop="89268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89939" g_stop="89568" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="389" r_length="372" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E341056" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89939" e_stop="89568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTTTTGTGAATACTTTCATTTGCTGTTTGGATTTTGGATATTCTACTCAGGAAATTATTTGGTTTCTTTGAAGACTGGTTGGGGTCTCTTACAAAGTTCCAATGTTTGATTCTTAGTTTCAAAATTTCTTCATGTCATTCTCTATTCGCGTGCGACGAGTTCGGATTCTGCATTCTTTCTCAGTAGTCTTTCTTTACTGGTTCTACGTGTTTTCATGAACTAGAGCCCTCATCATTTTCTTGTTCCAGTTTAATTTACAAATTCCATAGCCACACTATCAAAAGTTTGGTGCTTTAACAAATTATACATAGTTCCCTGTTATTCCATTTTTTAAATCATTCATCCAATCTGCCTGAGAGACATGTCTT</genome_strand>
        <mrna_strand>ATCATTTTTGTGAATACTTTCATTTGCTGTTTGGATTTTGGATATTCTACTCAGGAAATTATTTGGTTTCTTTGAAGACTGGTTGGGGTCTCTTACAAAGTTCCAATGTTTGATTCTTAGTTTCAAAATTTCTTCATGTCATTCTCTATTCGCGTGCGACGAGTTCGGATTCTGCATTCTTTCTCAGTAGTCTTTCTTTACTGGTTCTACGTGTTTTCATGAACTAGAGCCCTCATCATTTTCTTGTTCCAGTTTAATTTACAAATTCCATAACCACACTATCAAAAGTTTGGTGCTTTAACAAATTATACATAGTTCCCTGTTATTCCATTTTTTAAATCATTCATCCAATCTGCCTGAGAGACATGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253427" ref_strand="+" ref_description="SGN-E253427 [cLEG-24-L5]">
      <seq>tggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctggttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93132" stop="91926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92832" g_stop="92226" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E253427" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92832" e_stop="92226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTCGGATTAATTCTTGTATTTTATATTA-TTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGTTATTGTAAGAATAACAATCTTAAG-AAATTTAT-CAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTATGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAAATTTATCGTCAAATCAGAAACATTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTCAAATACTTAACTTATCTGCCATTTGTGAC--AAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAATAAGTGCTGCAACAACATCGGTTGCACATAATCGTTCTAATGCTGCCTTAGTGCCTACTGAGAAACCTGCATAGTTTTCTGGAATCGAGTTTAAGAGATGGAAGCAAAAGATGTTCTTCTATCTCACCACATTGAGTCTGCAGAAATTCGTTAATGAGACTGTTCCTGTTATGTCAGATGAAACTCCGGGTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAAATTTTTTGTGTTAAAATTATATTTTGAGT</genome_strand>
        <mrna_strand>TGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGGTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261066" ref_strand="+" ref_description="SGN-E261066 [cLEG-65-C11]">
      <seq>tttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcataaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagatttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93247" stop="91948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92947" g_stop="92248" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E261066" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92947" e_stop="92248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGGTACCGGTATTTCTTTAACAAGTTTAATCTGTTTTATCTTGGGAGAAATTAATCCATAACCATGGGTACAGTGAGGGGATTAAATTTCTTAAGGATACACA--AGTTTTTGTGGACTCGGATTAATTCTTGTATTTTATATTA-TTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGTTATTGTAAGAATAACAATCTTAAG-AAATTTAT-CAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTATGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAAATTTATCGTCAAATCAGAAACATTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTCAAATACTTAACTTATCTGCCATTTGTGAC--AAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAATAAGTGCTGCAACAACATCGGTTGCACATAATCGTTCTAATGCTGCCTTAGTGCCTACTGAGAAACCTGCATAGTTTTCTGGAATCGAGTTTAAGAGATGGAAGCAAAAGATGTTCTTCTATCTCACCACATTGAGTCTGCAGAAATTCGTTAATGAGACTGTTCCTGTTATGTCAGATGAAACTCCGGGTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAAATTTTTT</genome_strand>
        <mrna_strand>TTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCATAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGATTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258047" ref_strand="+" ref_description="SGN-E258047 [cLEG-48-K15]">
      <seq>ttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93020" stop="91980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92720" g_stop="92280" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E258047" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92720" e_stop="92280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAT-CAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTATGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAAATTTATCGTCAAATCAGAAACATTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTCAAATACTTAACTTATCTGCCATTTGTGAC--AAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAATAAGTGCTGCAACAACATCGGTTGCACATAATCGTTCTAATGCTGCCTTAGTGCCTACTGAGAAACCTGCATAGTTTTCTGGAATCGAGTTTAAGAGATGGAAGCAAAAGATGTTCTTCTATCTCACCACATTGAGTCTGCAGAAATTCGTTAATGAGACTGTTCCTGTTATGTCAGATGAAACTCCGGGTGATGAACGATTCTTG</genome_strand>
        <mrna_strand>TTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263584" ref_strand="+" ref_description="SGN-E263584 [cLEG-60-L13]">
      <seq>tgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93287" stop="91987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92987" g_stop="92287" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E263584" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92987" e_stop="92287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTGTTGCTGTTCTTAAGTTCATTGAAGTTAAAGAAGTTTGAGGTACCGGTATTTCTTTAACAAGTTTAATCTGTTTTATCTTGGGAGAAATTAATCCATAACCATGGGTACAGTGAGGGGATTAAATTTCTTAAGGATACACA--AGTTTTTGTGGACTCGGATTAATTCTTGTATTTTATATTA-TTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGTTATTGTAAGAATAACAATCTTAAG-AAATTTAT-CAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTATGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAAATTTATCGTCAAATCAGAAACATTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTCAAATACTTAACTTATCTGCCATTTGTGAC--AAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAATAAGTGCTGCAACAACATCGGTTGCACATAATCGTTCTAATGCTGCCTTAGTGCCTACTGAGAAACCTGCATAGTTTTCTGGAATCGAGTTTAAGAGATGGAAGCAAAAGATGTTCTTCTATCTCACCACATTGAGTCTGCAGAAATTCGTTAATGAGACTGTTCCTGTTATGTCAGATGAAACTCCGGGTGATGAACG</genome_strand>
        <mrna_strand>TGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276669" ref_strand="+" ref_description="SGN-E276669 [cLEN-14-A16]">
      <seq>ttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93246" stop="92018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92946" g_stop="92318" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E276669" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92946" e_stop="92318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGTACCGGTATTTCTTTAACAAGTTTAATCTGTTTTATCTTGGGAGAAATTAATCCATAACCATGGGTACAGTGAGGGGATTAAATTTCTTAAGGATACACA--AGTTTTTGTGGACTCGGATTAATTCTTGTATTTTATATTA-TTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGTTATTGTAAGAATAACAATCTTAAG-AAATTTAT-CAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTATGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAAATTTATCGTCAAATCAGAAACATTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTCAAATACTTAACTTATCTGCCATTTGTGAC--AAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAATAAGTGCTGCAACAACATCGGTTGCACATAATCGTTCTAATGCTGCCTTAGTGCCTACTGAGAAACCTGCATAGTTTTCTGGAATCGAGTTTAAGAGATGGAAGCAAAAGATGTTCTTCTATCTCACCACATTGAGTCTGCAGAAATTCGTTAATGAGACTGTTCCTG</genome_strand>
        <mrna_strand>TTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273518" ref_strand="+" ref_description="SGN-E273518 [cLEN-6-E15]">
      <seq>ggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93375" stop="92140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93091" g_stop="92440" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E273518" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93091" e_stop="92440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTCAATTTTCGATTATTTTTTTCAAACACTGAAAATTTTTCCTTCTCTACATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATTGACTGAGTCTGTATGACTTGTTGCTGTTCTTAAGTTCATTGAAGTTAAAGAAGTTTGAGGTACCGGTATTTCTTTAACAAGTTTAATCTGTTTTATCTTGGGAGAAATTAATCCATAACCATGGGTACAGTGAGGGGATTAAATTTCTTAAGGATACACA--AGTTTTTGTGGACTCGGATTAATTCTTGTATTTTATATTA-TTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGTTATTGTAAGAATAACAATCTTAAG-AAATTTAT-CAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTATGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAAATTTATCGTCAAATCAGAAACATTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTCAAATACTTAACTTATCTGCCATTTGTGACA-AAAAAA-TGACTAATTCAAGTCAAACAAATGCTGGAACAATAAGTGCTGCAACAACATCGGTTGCACATAATCGTTCTAATGCTGC</genome_strand>
        <mrna_strand>GGAAGTCAAATTT---TGATTT-TTT-AAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262710" ref_strand="+" ref_description="SGN-E262710 [cLEG-63-E14]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93422" stop="92219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93123" g_stop="92517" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E262710" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93123" e_stop="92517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGTTATAAAAGGAAGTCAATTTTCGATTATTTTTTTCAAACACTGAAAATTTTTCCTTCTCTACATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATTGACTGAGTCTGTATGACTTGTTGCTGTTCTTAAGTTCATTGAAGTTAAAGAAGTTTGAGGTACCGGTATTTCTTTAACAAGTTTAATCTGTTTTATCTTGGGAGAAATTAATCCATAACCATGGGTACAGTGAGGGGATTAAATTTCTTAAGGATACACA--AGTTTTTGTGGACTCGGATTAATTCTTGTATTTTATATTA-TTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGTTATTGTAAGAATAACAATCTTAAG-AAATTTAT-CAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTATGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAAATTTATCGTCAAATCAGAAACATTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTCAAATACTTAACTTATCTGCCATTTGTGACAAAAAAATG</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTT---TGA-TTTTTT-AAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369760" ref_strand="+" ref_description="SGN-E369760 [TUS-25-O3]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93422" stop="92246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93123" g_stop="92546" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E369760" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93123" e_stop="92546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGTTATAAAAGGAAGTCAATTTTCGATTATTTTTTTCAAACACTGAAAATTTTTCCTTCTCTACATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATTGACTGAGTCTGTATGACTTGTTGCTGTTCTTAAGTTCATTGAAGTTAAAGAAGTTTGAGGTACCGGTATTTCTTTAACAAGTTTAATCTGTTTTATCTTGGGAGAAATTAATCCATAACCATGGGTACAGTGAGGGGATTAAATTTCTTAAGGATACACA--AGTTTTTGTGGACTCGGATTAATTCTTGTATTTTATATTA-TTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGTTATTGTAAGAATAACAATCTTAAG-AAATTTAT-CAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTATGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAAATTTATCGTCAAATCAGAAACATTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTCAAATACTTA</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTT---TGA-TTTTTT-AAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255327" ref_strand="+" ref_description="SGN-E255327 [cLEG-30-E2]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgatttttgaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93422" stop="92309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93123" g_stop="92609" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E255327" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93123" e_stop="92609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGTTATAAAAGGAAGTCAATTTTCGATTATTTTTTTCAAACACTGAAAATTTTTCCTTCTCTACATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATTGACTGAGTCTGTATGACTTGTTGCTGTTCTTAAGTTCATTGAAGTTAAAGAAGTTTGAGGTACCGGTATTTCTTTAACAAGTTTAATCTGTTTTATCTTGGGAGAAATTAATCCATAACCATGGGTACAGTGAGGGGATTAAATTTCTTAAGGATACACA--AGTTTTTGTGGACTCGGATTAATTCTTGTATTTTATATTA-TTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGTTATTGTAAGAATAACAATCTTAAG-AAATTTAT-CAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTATGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAAATTTA</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTT---TGA--TTTTTGAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375521" ref_strand="+" ref_description="SGN-E375521 [TUS-34-B10]">
      <seq>tggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0288L16-bQQZ4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0288L16.1" temp_strand="-" temp_description="C06HBa0288L16.1  AC211069.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0288L16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93132" stop="92346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92832" g_stop="92645" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0288L16.1" gen_strand="-" ref_id="SGN-E375521" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0288L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92832" e_stop="92645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTCGGATTAATTCTTGTATTTTATATTA-TTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGTTATTGTAAGAATAACAATCTTAAGAA-ATTTAT-CAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTATGCTTGAATTTTTAAAATT</genome_strand>
        <mrna_strand>TGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>122</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3186" PGL_stop="18052"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3186" e_stop="3251"/>
            <exon e_start="4665" e_stop="4736"/>
            <exon e_start="4898" e_stop="4993"/>
            <exon e_start="5375" e_stop="5452"/>
            <exon e_start="6920" e_stop="7048"/>
            <exon e_start="7218" e_stop="7394"/>
            <exon e_start="9573" e_stop="9776"/>
            <exon e_start="9864" e_stop="9977"/>
            <exon e_start="10065" e_stop="10315"/>
            <exon e_start="11615" e_stop="11660"/>
            <exon e_start="11742" e_stop="11990"/>
            <exon e_start="12408" e_stop="12638"/>
            <exon e_start="14220" e_stop="14311"/>
            <exon e_start="15780" e_stop="16008"/>
            <exon e_start="17022" e_stop="17378"/>
            <exon e_start="17476" e_stop="17549"/>
            <exon e_start="17650" e_stop="18052"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.381" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.845" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.806" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.899" e_score="0.971"/>
          <exon-intron don_prob="0.472" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.911" e_score="0.946"/>
          <exon-intron don_prob="0.993" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3186" e_stop="3251" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.381">
            <gDNA_intron_boundary i_start="3252" i_stop="4664" i_length="1413"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4665" e_stop="4736" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.922">
            <gDNA_intron_boundary i_start="4737" i_stop="4897" i_length="161"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4898" e_stop="4993" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.976">
            <gDNA_intron_boundary i_start="4994" i_stop="5374" i_length="381"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5375" e_stop="5452" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5453" i_stop="6919" i_length="1467"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6920" e_stop="7048" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.845" acc_prob="0.956">
            <gDNA_intron_boundary i_start="7049" i_stop="7217" i_length="169"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="7218" e_stop="7394" e_length="177"/>
          </exon>
          <intron i_serial="6" don_prob="0.806" acc_prob="0.995">
            <gDNA_intron_boundary i_start="7395" i_stop="9572" i_length="2178"/>
          </intron>
          <exon e_serial="7" e_score="0.971">
            <gDNA_exon_boundary e_start="9573" e_stop="9776" e_length="204"/>
          </exon>
          <intron i_serial="7" don_prob="0.931" acc_prob="0.899">
            <gDNA_intron_boundary i_start="9777" i_stop="9863" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="9864" e_stop="9977" e_length="114"/>
          </exon>
          <intron i_serial="8" don_prob="0.472" acc_prob="0.953">
            <gDNA_intron_boundary i_start="9978" i_stop="10064" i_length="87"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="10065" e_stop="10315" e_length="251"/>
          </exon>
          <intron i_serial="9" don_prob="0.945" acc_prob="0.999">
            <gDNA_intron_boundary i_start="10316" i_stop="11614" i_length="1299"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="11615" e_stop="11660" e_length="46"/>
          </exon>
          <intron i_serial="10" don_prob="0.919" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11661" i_stop="11741" i_length="81"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="11742" e_stop="11990" e_length="249"/>
          </exon>
          <intron i_serial="11" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11991" i_stop="12407" i_length="417"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="12408" e_stop="12638" e_length="231"/>
          </exon>
          <intron i_serial="12" don_prob="0.979" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12639" i_stop="14219" i_length="1581"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="14220" e_stop="14311" e_length="92"/>
          </exon>
          <intron i_serial="13" don_prob="0.981" acc_prob="0.952">
            <gDNA_intron_boundary i_start="14312" i_stop="15779" i_length="1468"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="15780" e_stop="16008" e_length="229"/>
          </exon>
          <intron i_serial="14" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16009" i_stop="17021" i_length="1013"/>
          </intron>
          <exon e_serial="15" e_score="0.946">
            <gDNA_exon_boundary e_start="17022" e_stop="17378" e_length="357"/>
          </exon>
          <intron i_serial="15" don_prob="0.999" acc_prob="0.911">
            <gDNA_intron_boundary i_start="17379" i_stop="17475" i_length="97"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="17476" e_stop="17549" e_length="74"/>
          </exon>
          <intron i_serial="16" don_prob="0.993" acc_prob="0.992">
            <gDNA_intron_boundary i_start="17550" i_stop="17649" i_length="100"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="17650" e_stop="18052" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3186" stop="3251"/>
              <exon start="4665" stop="4736"/>
              <exon start="4898" stop="4993"/>
              <exon start="5375" stop="5452"/>
              <exon start="6920" stop="7048"/>
              <exon start="7218" stop="7394"/>
              <exon start="9573" stop="9656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5379" stop="5452"/>
              <exon start="6920" stop="7048"/>
              <exon start="7218" stop="7394"/>
              <exon start="9573" stop="9776"/>
              <exon start="9864" stop="9977"/>
              <exon start="10065" stop="10077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5397" stop="5452"/>
              <exon start="6920" stop="7048"/>
              <exon start="7218" stop="7394"/>
              <exon start="9573" stop="9776"/>
              <exon start="9864" stop="9977"/>
              <exon start="10065" stop="10152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7265" stop="7394"/>
              <exon start="9573" stop="9776"/>
              <exon start="9864" stop="9977"/>
              <exon start="10065" stop="10257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7293" stop="7394"/>
              <exon start="9573" stop="9776"/>
              <exon start="9864" stop="9977"/>
              <exon start="10065" stop="10203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9615" stop="9776"/>
              <exon start="9864" stop="9977"/>
              <exon start="10065" stop="10206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9644" stop="9776"/>
              <exon start="9864" stop="9977"/>
              <exon start="10065" stop="10315"/>
              <exon start="11615" stop="11660"/>
              <exon start="11742" stop="11806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9910" stop="9977"/>
              <exon start="10065" stop="10315"/>
              <exon start="11615" stop="11660"/>
              <exon start="11742" stop="11973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9954" stop="9977"/>
              <exon start="10065" stop="10315"/>
              <exon start="11615" stop="11660"/>
              <exon start="11742" stop="11990"/>
              <exon start="12408" stop="12567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10159" stop="10315"/>
              <exon start="11615" stop="11660"/>
              <exon start="11742" stop="11974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10259" stop="10315"/>
              <exon start="11615" stop="11660"/>
              <exon start="11742" stop="11990"/>
              <exon start="12408" stop="12602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11803" stop="11990"/>
              <exon start="12408" stop="12638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11827" stop="11990"/>
              <exon start="12408" stop="12619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280229" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11956" stop="11990"/>
              <exon start="12408" stop="12638"/>
              <exon start="14220" stop="14311"/>
              <exon start="15780" stop="15937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12408" stop="12638"/>
              <exon start="14220" stop="14311"/>
              <exon start="15780" stop="15984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14258" stop="14311"/>
              <exon start="15780" stop="16008"/>
              <exon start="17022" stop="17209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17137" stop="17378"/>
              <exon start="17476" stop="17549"/>
              <exon start="17650" stop="17856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415085" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17233" stop="17378"/>
              <exon start="17476" stop="17549"/>
              <exon start="17650" stop="18052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17234" stop="17378"/>
              <exon start="17476" stop="17549"/>
              <exon start="17650" stop="18001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17313" stop="17378"/>
              <exon start="17476" stop="17549"/>
              <exon start="17650" stop="17881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17489" stop="17549"/>
              <exon start="17650" stop="18025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17788" stop="18034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATTTTAGTTGATGGACAAAAAAAATCTATCACTGATAAAGAAGGATATTATAAGCTTGACCAG : GTCACGTCTAAACGATACACAATAGAAGCAAAGAAAGTGCACTACAGATTTGACAGGCTCATTGACTTTTTG : GTATTGCCTAATATGGCTTCTATATCTGACATCAAAGCTGCATCATATGATGTATGTGGTGTTGCACAAACAGTTAATTCTGAATTCAAAGCCAAG : GTAGCTCTGACTCATGGCCCACAAAACGTCAAACCTCAAGTGAAACTTACTGATGAGAGTGGCCATTTTTGCTTTGAG : GTTCCTCCTGGTGATTATCGCTTATCTGCAATCCCAGCAAAACTTGAGAACGCTAAAGAACTTCTATTTTCTCCTTCTCATATTGATGTTTCAGTCAGGAGTCCGATATTGGATGTCAAGTTCTATCAG : GCACAAGTAAGTATACATGGCTCCGTTGTTTGTAAGGAGAAATGTGGTTCTTCAGTTTCTTTGACTCTTCTGCGCCTGGATGGGAGAAATAAAGACGATAAGAAGACAATTGGTTTGGCAAATGAGAGTAATGAATTTTTCTTCTCAAATGTTCTCCCTGGTAAATACAGGGTTGAG : GTAAAAAACAATTATCCAATAGCATCATCAGGACAAGATAAATGGTGCTGGGAGCAGAGTTTTATTGATTTAGAAGTTGGCGCTGAGGATGTTAAAGGGGTAGATTTTGTTCAAAAAGGTTTCTGGGTCAACATAGTCTCAAGCCATGATGTGGAGGGCTTACTGACTCAATCAGATGGTTCTGGAATGAACTTGAACATCAAG : AAGGGTTCTCAACACGTGTGCGTAGAATCTCCGGGAGTGCATGAGCTGAGCTTTCCAAATTCATGTATTTCTTTTGGGAGTTCATCTGTGATCATTGACACATCTAACCTTTCT : CCTATCTATTTGAAAGGCGAGAGCTATCTTTTGAAGGGTCATGTCCATGTTGAATCAAGCTCGTTTAGTAGCGTTGAGGGCTTGCCTGAGAATATACCGTTGGACATTTTGGACAGTGAAGGTTCTGTTGTTGATGGTCTATTGGCAAGACGTGTGCCTTACGGAGTTGATCAATCGAGTGCAGCCATCTACGAATTTTCCATGTGGGCTAGTCCGGGAGGAAAATTTACTTTTATTCCTCGAGATGCACG : GGATGATGGCGGGAAAAAAATATTATTTTATCCCACACAGCAGCAT : GTTGCTGTGATGGAAGATGGCTGCCAATCTTCAATTCCTCCTTTTGCTGGTCGACTTGGGATGTATATAGAAGGATCAGTTTCTCCCCCTCTCAATGATGTTGTTGTCAAAATAATTGCTACAGGAGACAGCCAAAGTGCTCCACTTAAGCAAGGCGATTTAGCACTTCAAACTACCACAGGGACCGATGGCTTATATGTCGCAGGGCCTCTATATGATGATATAAGTTATACTGTTGAAGCTTCAAAG : CCGGGTTACCATGTAAAGCAAGCTGGACCTCATTCCTTTTCTTGTCAGAAGCTGGGCCAAATTTCAGTGCGTATATATTCTAGAGAAGACGCCAACGAGCCTTTTCCATCAGTTCTCTTATCATTAAGTGGAGAAGATGGTTACAGGAACAATACAGTATCAGGTGTTGGTGGGATTTTTGTATTTGGGGACTTATTTCCAGGGAGTTTCTATCTCCGACCCTTGCTTAAG : GAATATGCTTTCTCCCCTCCAGCAGAGGCAATCGAACTTGGCTCTGGAGAGTCAAAGGAAGTCGTCTTTCATGCAACGCGTGTTGCATACAG : TGCCATGGGAGTAGTTAAACTCTTGTCTGGTCAGCCAAAAGAAGGTGTTTCAGTAGAAGCTCGATCCGAGTCAAAAGGCTTGTATGAGGAGACAGTAACAGATTCAACAGGATTTTACCGTTTGAGAGGACTCCTACCCGATACTACTTATGTGATTAAAGTAGCAAGGAAAGTTGCATCTGGTGGAGCTATGATTGAGCGTGCATCTCCTGAGTTTCTGACCGTTCAG : GTGAACGCTGAGGACTCTAGGGGATTAGATTTTGTAGTATTTGAACAGCCAGAGAGGACAATTATAAGTGGCCATGTTGAAGGGCATAAAATCAAAGAGTTCAACTCACATCTCCATGTGGAGATCAAGTCTGCTGCTGATCCGTCAAAGATTGAGTACAACTCTCCACTTCCCCTCTCAAACTTTTTCCAGGTGAAGGACTTGCCTAAGGGTAAATACCTTGTACAGCTGAGATCATCTCTGCCTTCAAGGACTCACAAATTTGAATCAGATGTTATTGAGGTTGATTTAGAGAAAAATTCTCAAATTCATGTGGGTCCACTCAAGTACAAAATCGATTTCAATCACCAGAAACAG : GATTTAACTCCAGCTCCTGTGTACCCTCTATTTGTTGGAGTTTCTGTGATTGCACTTTTCATTGGGATGCCAAG : ATTGAAGGATTTATACCAAGTGATGATGGGAATGTCTTCATCAGTAGTGTCAGCAAAGAAAGAAGTGAAAAGACCTCTAGTGAGAAAGAAAACATACTGAGGAATGGATCTACTTTTTAGAGGAGCTTCAATGCTTACTTAGGTAGGTGACATGAATGATCTATAAGAGCTGATGTAGTTTTTATTTGTCCATCGATTCAAGCAAATCTTCACTCACACAAGGATCTCCTCCCTCGCCTCACAGCAACCCTCTACTACGATACTGAATCTTCATTTGTTAGTCGTTAGCGCTTCAAATTTTGACAATTTTAACCTCAATATATTTATTATACCTATGCCAATTTTTGGGATGGTTTCAGTAAATTATGTTTTTGTGATTCCATCCATATTTAGCTTTTGTAAC</gDNA_template>
            <first_frame> E  I  L  V  D  G  Q  K  K  S  I  T  D  K  E  G  Y  Y  K  L  D  Q  :  V  T  S  K  R  Y  T  I  E  A  K  K  V  H  Y  R  F  D  R  L  I  D  F  L  :  V  L  P  N  M  A  S  I  S  D  I  K  A  A  S  Y  D  V  C  G  V  A  Q  T  V  N  S  E  F  K  A  K  :  V  A  L  T  H  G  P  Q  N  V  K  P  Q  V  K  L  T  D  E  S  G  H  F  C  F  E  :  V  P  P  G  D  Y  R  L  S  A  I  P  A  K  L  E  N  A  K  E  L  L  F  S  P  S  H  I  D  V  S  V  R  S  P  I  L  D  V  K  F  Y  Q  :  A  Q  V  S  I  H  G  S  V  V  C  K  E  K  C  G  S  S  V  S  L  T  L  L  R  L  D  G  R  N  K  D  D  K  K  T  I  G  L  A  N  E  S  N  E  F  F  F  S  N  V  L  P  G  K  Y  R  V  E  :  V  K  N  N  Y  P  I  A  S  S  G  Q  D  K  W  C  W  E  Q  S  F  I  D  L  E  V  G  A  E  D  V  K  G  V  D  F  V  Q  K  G  F  W  V  N  I  V  S  S  H  D  V  E  G  L  L  T  Q  S  D  G  S  G  M  N  L  N  I  K  :  K  G  S  Q  H  V  C  V  E  S  P  G  V  H  E  L  S  F  P  N  S  C  I  S  F  G  S  S  S  V  I  I  D  T  S  N  L  S  :  P  I  Y  L  K  G  E  S  Y  L  L  K  G  H  V  H  V  E  S  S  S  F  S  S  V  E  G  L  P  E  N  I  P  L  D  I  L  D  S  E  G  S  V  V  D  G  L  L  A  R  R  V  P  Y  G  V  D  Q  S  S  A  A  I  Y  E  F  S  M  W  A  S  P  G  G  K  F  T  F  I  P  R  D  A  R :   D  D  G  G  K  K  I  L  F  Y  P  T  Q  Q  H  :  V  A  V  M  E  D  G  C  Q  S  S  I  P  P  F  A  G  R  L  G  M  Y  I  E  G  S  V  S  P  P  L  N  D  V  V  V  K  I  I  A  T  G  D  S  Q  S  A  P  L  K  Q  G  D  L  A  L  Q  T  T  T  G  T  D  G  L  Y  V  A  G  P  L  Y  D  D  I  S  Y  T  V  E  A  S  K  :  P  G  Y  H  V  K  Q  A  G  P  H  S  F  S  C  Q  K  L  G  Q  I  S  V  R  I  Y  S  R  E  D  A  N  E  P  F  P  S  V  L  L  S  L  S  G  E  D  G  Y  R  N  N  T  V  S  G  V  G  G  I  F  V  F  G  D  L  F  P  G  S  F  Y  L  R  P  L  L  K  :  E  Y  A  F  S  P  P  A  E  A  I  E  L  G  S  G  E  S  K  E  V  V  F  H  A  T  R  V  A  Y  S :   A  M  G  V  V  K  L  L  S  G  Q  P  K  E  G  V  S  V  E  A  R  S  E  S  K  G  L  Y  E  E  T  V  T  D  S  T  G  F  Y  R  L  R  G  L  L  P  D  T  T  Y  V  I  K  V  A  R  K  V  A  S  G  G  A  M  I  E  R  A  S  P  E  F  L  T  V  Q  :  V  N  A  E  D  S  R  G  L  D  F  V  V  F  E  Q  P  E  R  T  I  I  S  G  H  V  E  G  H  K  I  K  E  F  N  S  H  L  H  V  E  I  K  S  A  A  D  P  S  K  I  E  Y  N  S  P  L  P  L  S  N  F  F  Q  V  K  D  L  P  K  G  K  Y  L  V  Q  L  R  S  S  L  P  S  R  T  H  K  F  E  S  D  V  I  E  V  D  L  E  K  N  S  Q  I  H  V  G  P  L  K  Y  K  I  D  F  N  H  Q  K  Q  :  D  L  T  P  A  P  V  Y  P  L  F  V  G  V  S  V  I  A  L  F  I  G  M  P  R :   L  K  D  L  Y  Q  V  M  M  G  M  S  S  S  V  V  S  A  K  K  E  V  K  R  P  L  V  R  K  K  T  Y  *  G  M  D  L  L  F  R  G  A  S  M  L  T  *  V  G  D  M  N  D  L  *  E  L  M  *  F  L  F  V  H  R  F  K  Q  I  F  T  H  T  R  I  S  S  L  A  S  Q  Q  P  S  T  T  I  L  N  L  H  L  L  V  V  S  A  S  N  F  D  N  F  N  L  N  I  F  I  I  P  M  P  I  F  G  M  V  S  V  N  Y  V  F  V  I  P  S  I  F  S  F  C  N </first_frame>
            <second_frame>  K  F  *  L  M  D  K  K  N  L  S  L  I  K  K  D  I  I  S  L  T  R :   S  R  L  N  D  T  Q  *  K  Q  R  K  C  T  T  D  L  T  G  S  L  T  F  W :   Y  C  L  I  W  L  L  Y  L  T  S  K  L  H  H  M  M  Y  V  V  L  H  K  Q  L  I  L  N  S  K  P  R :   *  L  *  L  M  A  H  K  T  S  N  L  K  *  N  L  L  M  R  V  A  I  F  A  L  R :   F  L  L  V  I  I  A  Y  L  Q  S  Q  Q  N  L  R  T  L  K  N  F  Y  F  L  L  L  I  L  M  F  Q  S  G  V  R  Y  W  M  S  S  S  I  R :   H  K  *  V  Y  M  A  P  L  F  V  R  R  N  V  V  L  Q  F  L  *  L  F  C  A  W  M  G  E  I  K  T  I  R  R  Q  L  V  W  Q  M  R  V  M  N  F  S  S  Q  M  F  S  L  V  N  T  G  L  R :   *  K  T  I  I  Q  *  H  H  Q  D  K  I  N  G  A  G  S  R  V  L  L  I  *  K  L  A  L  R  M  L  K  G  *  I  L  F  K  K  V  S  G  S  T  *  S  Q  A  M  M  W  R  A  Y  *  L  N  Q  M  V  L  E  *  T  *  T  S  R :   R  V  L  N  T  C  A  *  N  L  R  E  C  M  S  *  A  F  Q  I  H  V  F  L  L  G  V  H  L  *  S  L  T  H  L  T  F  L :   L  S  I  *  K  A  R  A  I  F  *  R  V  M  S  M  L  N  Q  A  R  L  V  A  L  R  A  C  L  R  I  Y  R  W  T  F  W  T  V  K  V  L  L  L  M  V  Y  W  Q  D  V  C  L  T  E  L  I  N  R  V  Q  P  S  T  N  F  P  C  G  L  V  R  E  E  N  L  L  L  F  L  E  M  H   : G  M  M  A  G  K  K  Y  Y  F  I  P  H  S  S  M :   L  L  *  W  K  M  A  A  N  L  Q  F  L  L  L  L  V  D  L  G  C  I  *  K  D  Q  F  L  P  L  S  M  M  L  L  S  K  *  L  L  Q  E  T  A  K  V  L  H  L  S  K  A  I  *  H  F  K  L  P  Q  G  P  M  A  Y  M  S  Q  G  L  Y  M  M  I  *  V  I  L  L  K  L  Q  S :   R  V  T  M  *  S  K  L  D  L  I  P  F  L  V  R  S  W  A  K  F  Q  C  V  Y  I  L  E  K  T  P  T  S  L  F  H  Q  F  S  Y  H  *  V  E  K  M  V  T  G  T  I  Q  Y  Q  V  L  V  G  F  L  Y  L  G  T  Y  F  Q  G  V  S  I  S  D  P  C  L  R :   N  M  L  S  P  L  Q  Q  R  Q  S  N  L  A  L  E  S  Q  R  K  S  S  F  M  Q  R  V  L  H  T   : V  P  W  E  *  L  N  S  C  L  V  S  Q  K  K  V  F  Q  *  K  L  D  P  S  Q  K  A  C  M  R  R  Q  *  Q  I  Q  Q  D  F  T  V  *  E  D  S  Y  P  I  L  L  M  *  L  K  *  Q  G  K  L  H  L  V  E  L  *  L  S  V  H  L  L  S  F  *  P  F  R :   *  T  L  R  T  L  G  D  *  I  L  *  Y  L  N  S  Q  R  G  Q  L  *  V  A  M  L  K  G  I  K  S  K  S  S  T  H  I  S  M  W  R  S  S  L  L  L  I  R  Q  R  L  S  T  T  L  H  F  P  S  Q  T  F  S  R  *  R  T  C  L  R  V  N  T  L  Y  S  *  D  H  L  C  L  Q  G  L  T  N  L  N  Q  M  L  L  R  L  I  *  R  K  I  L  K  F  M  W  V  H  S  S  T  K  S  I  S  I  T  R  N  R :   I  *  L  Q  L  L  C  T  L  Y  L  L  E  F  L  *  L  H  F  S  L  G  C  Q   : D  *  R  I  Y  T  K  *  *  W  E  C  L  H  Q  *  C  Q  Q  R  K  K  *  K  D  L  *  *  E  R  K  H  T  E  E  W  I  Y  F  L  E  E  L  Q  C  L  L  R  *  V  T  *  M  I  Y  K  S  *  C  S  F  Y  L  S  I  D  S  S  K  S  S  L  T  Q  G  S  P  P  S  P  H  S  N  P  L  L  R  Y  *  I  F  I  C  *  S  L  A  L  Q  I  L  T  I  L  T  S  I  Y  L  L  Y  L  C  Q  F  L  G  W  F  Q  *  I  M  F  L  *  F  H  P  Y  L  A  F  V   </second_frame>
            <third_frame>   N  F  S  *  W  T  K  K  I  Y  H  *  *  R  R  I  L  *  A  *  P   : G  H  V  *  T  I  H  N  R  S  K  E  S  A  L  Q  I  *  Q  A  H  *  L  F   : G  I  A  *  Y  G  F  Y  I  *  H  Q  S  C  I  I  *  C  M  W  C  C  T  N  S  *  F  *  I  Q  S  Q   : G  S  S  D  S  W  P  T  K  R  Q  T  S  S  E  T  Y  *  *  E  W  P  F  L  L  *   : G  S  S  W  *  L  S  L  I  C  N  P  S  K  T  *  E  R  *  R  T  S  I  F  S  F  S  Y  *  C  F  S  Q  E  S  D  I  G  C  Q  V  L  S   : G  T  S  K  Y  T  W  L  R  C  L  *  G  E  M  W  F  F  S  F  F  D  S  S  A  P  G  W  E  K  *  R  R  *  E  D  N  W  F  G  K  *  E  *  *  I  F  L  L  K  C  S  P  W  *  I  Q  G  *   : G  K  K  Q  L  S  N  S  I  I  R  T  R  *  M  V  L  G  A  E  F  Y  *  F  R  S  W  R  *  G  C  *  R  G  R  F  C  S  K  R  F  L  G  Q  H  S  L  K  P  *  C  G  G  L  T  D  S  I  R  W  F  W  N  E  L  E  H  Q   : E  G  F  S  T  R  V  R  R  I  S  G  S  A  *  A  E  L  S  K  F  M  Y  F  F  W  E  F  I  C  D  H  *  H  I  *  P  F   : S  Y  L  F  E  R  R  E  L  S  F  E  G  S  C  P  C  *  I  K  L  V  *  *  R  *  G  L  A  *  E  Y  T  V  G  H  F  G  Q  *  R  F  C  C  *  W  S  I  G  K  T  C  A  L  R  S  *  S  I  E  C  S  H  L  R  I  F  H  V  G  *  S  G  R  K  I  Y  F  Y  S  S  R  C  T  :  G  *  W  R  E  K  N  I  I  L  S  H  T  A  A   : C  C  C  D  G  R  W  L  P  I  F  N  S  S  F  C  W  S  T  W  D  V  Y  R  R  I  S  F  S  P  S  Q  *  C  C  C  Q  N  N  C  Y  R  R  Q  P  K  C  S  T  *  A  R  R  F  S  T  S  N  Y  H  R  D  R  W  L  I  C  R  R  A  S  I  *  *  Y  K  L  Y  C  *  S  F  K   : A  G  L  P  C  K  A  S  W  T  S  F  L  F  L  S  E  A  G  P  N  F  S  A  Y  I  F  *  R  R  R  Q  R  A  F  S  I  S  S  L  I  I  K  W  R  R  W  L  Q  E  Q  Y  S  I  R  C  W  W  D  F  C  I  W  G  L  I  S  R  E  F  L  S  P  T  L  A  *   : G  I  C  F  L  P  S  S  R  G  N  R  T  W  L  W  R  V  K  G  S  R  L  S  C  N  A  C  C  I  Q  :  C  H  G  S  S  *  T  L  V  W  S  A  K  R  R  C  F  S  R  S  S  I  R  V  K  R  L  V  *  G  D  S  N  R  F  N  R  I  L  P  F  E  R  T  P  T  R  Y  Y  L  C  D  *  S  S  K  E  S  C  I  W  W  S  Y  D  *  A  C  I  S  *  V  S  D  R  S   : G  E  R  *  G  L  *  G  I  R  F  C  S  I  *  T  A  R  E  D  N  Y  K  W  P  C  *  R  A  *  N  Q  R  V  Q  L  T  S  P  C  G  D  Q  V  C  C  *  S  V  K  D  *  V  Q  L  S  T  S  P  L  K  L  F  P  G  E  G  L  A  *  G  *  I  P  C  T  A  E  I  I  S  A  F  K  D  S  Q  I  *  I  R  C  Y  *  G  *  F  R  E  K  F  S  N  S  C  G  S  T  Q  V  Q  N  R  F  Q  S  P  E  T   : G  F  N  S  S  S  C  V  P  S  I  C  W  S  F  C  D  C  T  F  H  W  D  A  K  :  I  E  G  F  I  P  S  D  D  G  N  V  F  I  S  S  V  S  K  E  R  S  E  K  T  S  S  E  K  E  N  I  L  R  N  G  S  T  F  *  R  S  F  N  A  Y  L  G  R  *  H  E  *  S  I  R  A  D  V  V  F  I  C  P  S  I  Q  A  N  L  H  S  H  K  D  L  L  P  R  L  T  A  T  L  Y  Y  D  T  E  S  S  F  V  S  R  *  R  F  K  F  *  Q  F  *  P  Q  Y  I  Y  Y  T  Y  A  N  F  W  D  G  F  S  K  L  C  F  C  D  S  I  H  I  *  L  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0288L16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3186" stop="3251"/>
                    <exon start="4665" stop="4736"/>
                    <exon start="4898" stop="4993"/>
                    <exon start="5375" stop="5452"/>
                    <exon start="6920" stop="7048"/>
                    <exon start="7218" stop="7394"/>
                    <exon start="9573" stop="9776"/>
                    <exon start="9864" stop="9977"/>
                    <exon start="10065" stop="10315"/>
                    <exon start="11615" stop="11660"/>
                    <exon start="11742" stop="11990"/>
                    <exon start="12408" stop="12638"/>
                    <exon start="14220" stop="14311"/>
                    <exon start="15780" stop="16008"/>
                    <exon start="17022" stop="17378"/>
                    <exon start="17476" stop="17549"/>
                    <exon start="17650" stop="17749"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2562</number_coding_nucleotides>
                  <number_encoded_amino_acids>854</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EILVDGQKKSITDKEGYYKLDQVTSKRYTIEAKKVHYRFDRLIDFLVLPNMASISDIKAASYDVCGVAQTVNSEFKAKVALTHGPQNVKPQVKLTDESGHFCFEVPPGDYRLSAIPAKLENAKELLFSPSHIDVSVRSPILDVKFYQAQVSIHGSVVCKEKCGSSVSLTLLRLDGRNKDDKKTIGLANESNEFFFSNVLPGKYRVEVKNNYPIASSGQDKWCWEQSFIDLEVGAEDVKGVDFVQKGFWVNIVSSHDVEGLLTQSDGSGMNLNIKKGSQHVCVESPGVHELSFPNSCISFGSSSVIIDTSNLSPIYLKGESYLLKGHVHVESSSFSSVEGLPENIPLDILDSEGSVVDGLLARRVPYGVDQSSAAIYEFSMWASPGGKFTFIPRDARDDGGKKILFYPTQQHVAVMEDGCQSSIPPFAGRLGMYIEGSVSPPLNDVVVKIIATGDSQSAPLKQGDLALQTTTGTDGLYVAGPLYDDISYTVEASKPGYHVKQAGPHSFSCQKLGQISVRIYSREDANEPFPSVLLSLSGEDGYRNNTVSGVGGIFVFGDLFPGSFYLRPLLKEYAFSPPAEAIELGSGESKEVVFHATRVAYSAMGVVKLLSGQPKEGVSVEARSESKGLYEETVTDSTGFYRLRGLLPDTTYVIKVARKVASGGAMIERASPEFLTVQVNAEDSRGLDFVVFEQPERTIISGHVEGHKIKEFNSHLHVEIKSAADPSKIEYNSPLPLSNFFQVKDLPKGKYLVQLRSSLPSRTHKFESDVIEVDLEKNSQIHVGPLKYKIDFNHQKQDLTPAPVYPLFVGVSVIALFIGMPRLKDLYQVMMGMSSSVVSAKKEVKRPLVRKKTY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0288L16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17828" stop="18052"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLFVHRFKQIFTHTRISSLASQQPSTTILNLHLLVVSASNFDNFNLNIFIIPMPIFGMVSVNYVFVIPSIFSFCN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="18568" PGL_stop="18929"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18568" e_stop="18929"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18568" e_stop="18929" e_length="362"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18568" stop="18929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306792" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAATCTTCTCTCCTAAAACCCTATCCTTTCTCTTACAATCTTCAATCAACAATGGCCTCCTCCACTCCCCCACCCCACTGTGCACTCACTACCTCTAAACCTTATCAACCCCAAACCCACTCCCATCCCCACCCCAACCACCGGAACAATCATCAACGCCATTGGTCCTCTCAAAAAGTCTCTCTGAATCCACCTCGCAATCCTAACCATCCTTCCCAAACCCCTAATTTTCTCTCTCTATCTTCATCAAAATCGGATTTTTCAGCTGATTTCTCGGGTAGACGGTCGACCCGATTCGTTTCCAAGATGCATTTTGGCCGGGCTAAGATATCGGGTAACGGAAGGCACTCTTCATTTGCT</gDNA_template>
            <first_frame> F  N  L  L  S  *  N  P  I  L  S  L  T  I  F  N  Q  Q  W  P  P  P  L  P  H  P  T  V  H  S  L  P  L  N  L  I  N  P  K  P  T  P  I  P  T  P  T  T  G  T  I  I  N  A  I  G  P  L  K  K  S  L  *  I  H  L  A  I  L  T  I  L  P  K  P  L  I  F  S  L  Y  L  H  Q  N  R  I  F  Q  L  I  S  R  V  D  G  R  P  D  S  F  P  R  C  I  L  A  G  L  R  Y  R  V  T  E  G  T  L  H  L   </first_frame>
            <second_frame>  S  I  F  S  P  K  T  L  S  F  L  L  Q  S  S  I  N  N  G  L  L  H  S  P  T  P  L  C  T  H  Y  L  *  T  L  S  T  P  N  P  L  P  S  P  P  Q  P  P  E  Q  S  S  T  P  L  V  L  S  K  S  L  S  E  S  T  S  Q  S  *  P  S  F  P  N  P  *  F  S  L  S  I  F  I  K  I  G  F  F  S  *  F  L  G  *  T  V  D  P  I  R  F  Q  D  A  F  W  P  G  *  D  I  G  *  R  K  A  L  F  I  C  </second_frame>
            <third_frame>   Q  S  S  L  L  K  P  Y  P  F  S  Y  N  L  Q  S  T  M  A  S  S  T  P  P  P  H  C  A  L  T  T  S  K  P  Y  Q  P  Q  T  H  S  H  P  H  P  N  H  R  N  N  H  Q  R  H  W  S  S  Q  K  V  S  L  N  P  P  R  N  P  N  H  P  S  Q  T  P  N  F  L  S  L  S  S  S  K  S  D  F  S  A  D  F  S  G  R  R  S  T  R  F  V  S  K  M  H  F  G  R  A  K  I  S  G  N  G  R  H  S  S  F  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0288L16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18570" stop="18929"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSSLLKPYPFSYNLQSTMASSTPPPHCALTTSKPYQPQTHSHPHPNHRNNHQRHWSSQKVSLNPPRNPNHPSQTPNFLSLSSSKSDFSADFSGRRSTRFVSKMHFGRAKISGNGRHSSFA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="19292" PGL_stop="23745"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19292" e_stop="20479"/>
            <exon e_start="21912" e_stop="22128"/>
            <exon e_start="23086" e_stop="23270"/>
            <exon e_start="23363" e_stop="23731"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="0.997"/>
          <exon-intron don_prob="0.993" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="19292" e_stop="20479" e_length="1188"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="20480" i_stop="21911" i_length="1432"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21912" e_stop="22128" e_length="217"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.957">
            <gDNA_intron_boundary i_start="22129" i_stop="23085" i_length="957"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23086" e_stop="23270" e_length="185"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23271" i_stop="23362" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23363" e_stop="23731" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19292" stop="20006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19405" stop="19740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19745" stop="20479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19746" stop="20479"/>
              <exon start="21912" stop="22009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20046" stop="20479"/>
              <exon start="21912" stop="22128"/>
              <exon start="23086" stop="23234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20064" stop="20479"/>
              <exon start="21912" stop="22112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20140" stop="20479"/>
              <exon start="21912" stop="21941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20314" stop="20479"/>
              <exon start="21912" stop="22128"/>
              <exon start="23086" stop="23270"/>
              <exon start="23363" stop="23444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21942" stop="22128"/>
              <exon start="23086" stop="23270"/>
              <exon start="23363" stop="23707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21942" stop="22128"/>
              <exon start="23086" stop="23270"/>
              <exon start="23363" stop="23704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21977" stop="22128"/>
              <exon start="23086" stop="23270"/>
              <exon start="23363" stop="23731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22049" stop="22128"/>
              <exon start="23086" stop="23270"/>
              <exon start="23363" stop="23556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23086" stop="23270"/>
              <exon start="23363" stop="23707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23109" stop="23270"/>
              <exon start="23363" stop="23713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552285" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCTATTAGAGTCTTTGAGACCATGAAAGATTCCGGCTTGAAGCCTAATTTAGTGACTTATAATGCGTTGATTGATGCTTGTGGGAAAGGGGGTGCTGATTTTAAGAGGGCGTCGGAGATTTTTGACGAAATGCTGAGAAATGGGGTTCAACCGGATAGGATTACCTTTAATTCGTTGCTTGCTGTTTGTAGTGGTGCAGGATTGTGGGAGACTGCGAGGGGTTTGTTTAACGAGATGATTTATAGAGGAATTGATCAGGATATATACACGTATAATACATTTTTGGATGTAGCATGTAATGGGGGACAGATAGATGTTGCTTTTGATATTATGTCTGAGATGCATGCAAAGAATATTTTGCCCAACCAAGTCACCTACAGTACTGTGATTCGTGGGTGTGCAAAAGCTGGGAGATTAGACAAAGCGTTGAGTTTATTTAATGAGATGAAGTGTGCTGGCATAAAACTAGACAGGGTTTCATACAATACTTTACTTGCTATATATGCAAGCCTGGGAAAATTTGAGGAGGCCCTTAATGTTAGCAAGGAGATGGAGGGTATGGGAATTAAGAAAGATGTTGTCACTTACAATGCTCTTCTGGATGGGTTTGGCAAACAAGGAATGTATACCAAGGTTAAGCAGTTGTTTGCAGAAATGAAAGCTGAAAAGCTTTCACCTAACTTATTGACGTACTCCACATTGATTAGTGTGTACTTGAAAGGAGCCTTGTATCATGATGCGGTAGAGGTCTATAAGGAGTTCAAGAAGCAAGGTCTGAAGGCAGATGTTGTTTTTTATAGCAAACTTATTGATGCCTTGTGTAAAAAAGGCCTTGTGGAGTATTCGTCGTTGTTGCTTAATGAGATGACGAAGGAAGGGATACAACCAAATGTTGTTACATATAACTCTATAATCAATGCTTTTGGTGAATCGGCAAACAATGAATGTGGATCAGACAATGTCACACATATTGTATCCGCTATTTCTCAAAGTAAGTGGGAAAACACTGAAGAGGATAATATCGTTAAGATTTTCGAGCAATTAGCTGCTCAAAAGTCAGCTAGTGGGAAGAAAACTAATGCTGAAAGACAGGACATGCTCTGCATTCTAGGTGTTTTCCATAAGATGCATGAATTACAAATAAAGCCTAATGTAGTCACGTTTTCAGCAATCTTGAATGCTTGCAG : CCGATGCAGTTCATTTGATGAAGCTTCACTCTTACTCGAAGAACTCCGTCTATTTGATAACCAAGTTTATGGGGTGGCACATGGACTTCTCATGGGGCAGAGGGAAGGTGTATGGTCACAAGCTCTATCTCTTTTCAATGAAGTGAAGCAGATGGACTCTTCAACTGCATCTGCCTTTTACAATGCTTTGACTGACATGCTGTGGCATTTTGACCAG : AAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCAGAAGTGTGGGAAAATACATGGTCCACTTCTTGTTTGGATCTGCATTTGATGTCTTCAGGGGCTGCATGTGCAATGGTCCACGCATGGTTGCTTAGTATACGGTCTATAGTGTTTGAAGGCCACGAGTTACCAAAGATGCTGAG : CATTTTGACTGGCTGGGGCAAGCACAGCAAGATAACAGGTGATGGCGCCTTAAAACGAGCCATTGAAGGCTTGCTCACCAGCATAGGTGCACCATTCCAGATAGCAAAGTGCAACATTGGGAGGTTCATATCCACTGGTGCTGTGGTAACTGCTTGGTTGAGAGAATCAGGTACACTGGAAGTGCTTGTTCTTCAAGATGATACAAGTCACTTGCGTGCCACAAGGTTTGATCAAATTTCTAATTTACAACAACTAACATTGTAGTCGTTTCTGTATAATTTTGACAGGGGAATATAAAATTTTTCCAGTGTAAATTAGTATATAAATATATATATTCCTTTGTTATGTGAATGTCCTATTCTACCGTC</gDNA_template>
            <first_frame> S  Y  *  S  L  *  D  H  E  R  F  R  L  E  A  *  F  S  D  L  *  C  V  D  *  C  L  W  E  R  G  C  *  F  *  E  G  V  G  D  F  *  R  N  A  E  K  W  G  S  T  G  *  D  Y  L  *  F  V  A  C  C  L  *  W  C  R  I  V  G  D  C  E  G  F  V  *  R  D  D  L  *  R  N  *  S  G  Y  I  H  V  *  Y  I  F  G  C  S  M  *  W  G  T  D  R  C  C  F  *  Y  Y  V  *  D  A  C  K  E  Y  F  A  Q  P  S  H  L  Q  Y  C  D  S  W  V  C  K  S  W  E  I  R  Q  S  V  E  F  I  *  *  D  E  V  C  W  H  K  T  R  Q  G  F  I  Q  Y  F  T  C  Y  I  C  K  P  G  K  I  *  G  G  P  *  C  *  Q  G  D  G  G  Y  G  N  *  E  R  C  C  H  L  Q  C  S  S  G  W  V  W  Q  T  R  N  V  Y  Q  G  *  A  V  V  C  R  N  E  S  *  K  A  F  T  *  L  I  D  V  L  H  I  D  *  C  V  L  E  R  S  L  V  S  *  C  G  R  G  L  *  G  V  Q  E  A  R  S  E  G  R  C  C  F  L  *  Q  T  Y  *  C  L  V  *  K  R  P  C  G  V  F  V  V  V  A  *  *  D  D  E  G  R  D  T  T  K  C  C  Y  I  *  L  Y  N  Q  C  F  W  *  I  G  K  Q  *  M  W  I  R  Q  C  H  T  Y  C  I  R  Y  F  S  K  *  V  G  K  H  *  R  G  *  Y  R  *  D  F  R  A  I  S  C  S  K  V  S  *  W  E  E  N  *  C  *  K  T  G  H  A  L  H  S  R  C  F  P  *  D  A  *  I  T  N  K  A  *  C  S  H  V  F  S  N  L  E  C  L  Q  :  P  M  Q  F  I  *  *  S  F  T  L  T  R  R  T  P  S  I  *  *  P  S  L  W  G  G  T  W  T  S  H  G  A  E  G  R  C  M  V  T  S  S  I  S  F  Q  *  S  E  A  D  G  L  F  N  C  I  C  L  L  Q  C  F  D  *  H  A  V  A  F  *  P   : E  T  R  C  S  I  G  C  T  *  R  K  T  F  R  S  V  G  K  Y  M  V  H  F  L  F  G  S  A  F  D  V  F  R  G  C  M  C  N  G  P  R  M  V  A  *  Y  T  V  Y  S  V  *  R  P  R  V  T  K  D  A  E  :  H  F  D  W  L  G  Q  A  Q  Q  D  N  R  *  W  R  L  K  T  S  H  *  R  L  A  H  Q  H  R  C  T  I  P  D  S  K  V  Q  H  W  E  V  H  I  H  W  C  C  G  N  C  L  V  E  R  I  R  Y  T  G  S  A  C  S  S  R  *  Y  K  S  L  A  C  H  K  V  *  S  N  F  *  F  T  T  T  N  I  V  V  V  S  V  *  F  *  Q  G  N  I  K  F  F  Q  C  K  L  V  Y  K  Y  I  Y  S  F  V  M  *  M  S  Y  S  T  V </first_frame>
            <second_frame>  A  I  R  V  F  E  T  M  K  D  S  G  L  K  P  N  L  V  T  Y  N  A  L  I  D  A  C  G  K  G  G  A  D  F  K  R  A  S  E  I  F  D  E  M  L  R  N  G  V  Q  P  D  R  I  T  F  N  S  L  L  A  V  C  S  G  A  G  L  W  E  T  A  R  G  L  F  N  E  M  I  Y  R  G  I  D  Q  D  I  Y  T  Y  N  T  F  L  D  V  A  C  N  G  G  Q  I  D  V  A  F  D  I  M  S  E  M  H  A  K  N  I  L  P  N  Q  V  T  Y  S  T  V  I  R  G  C  A  K  A  G  R  L  D  K  A  L  S  L  F  N  E  M  K  C  A  G  I  K  L  D  R  V  S  Y  N  T  L  L  A  I  Y  A  S  L  G  K  F  E  E  A  L  N  V  S  K  E  M  E  G  M  G  I  K  K  D  V  V  T  Y  N  A  L  L  D  G  F  G  K  Q  G  M  Y  T  K  V  K  Q  L  F  A  E  M  K  A  E  K  L  S  P  N  L  L  T  Y  S  T  L  I  S  V  Y  L  K  G  A  L  Y  H  D  A  V  E  V  Y  K  E  F  K  K  Q  G  L  K  A  D  V  V  F  Y  S  K  L  I  D  A  L  C  K  K  G  L  V  E  Y  S  S  L  L  L  N  E  M  T  K  E  G  I  Q  P  N  V  V  T  Y  N  S  I  I  N  A  F  G  E  S  A  N  N  E  C  G  S  D  N  V  T  H  I  V  S  A  I  S  Q  S  K  W  E  N  T  E  E  D  N  I  V  K  I  F  E  Q  L  A  A  Q  K  S  A  S  G  K  K  T  N  A  E  R  Q  D  M  L  C  I  L  G  V  F  H  K  M  H  E  L  Q  I  K  P  N  V  V  T  F  S  A  I  L  N  A  C  S :   R  C  S  S  F  D  E  A  S  L  L  L  E  E  L  R  L  F  D  N  Q  V  Y  G  V  A  H  G  L  L  M  G  Q  R  E  G  V  W  S  Q  A  L  S  L  F  N  E  V  K  Q  M  D  S  S  T  A  S  A  F  Y  N  A  L  T  D  M  L  W  H  F  D  Q  :  K  Q  G  A  Q  L  V  V  L  E  G  K  R  S  E  V  W  E  N  T  W  S  T  S  C  L  D  L  H  L  M  S  S  G  A  A  C  A  M  V  H  A  W  L  L  S  I  R  S  I  V  F  E  G  H  E  L  P  K  M  L  S :   I  L  T  G  W  G  K  H  S  K  I  T  G  D  G  A  L  K  R  A  I  E  G  L  L  T  S  I  G  A  P  F  Q  I  A  K  C  N  I  G  R  F  I  S  T  G  A  V  V  T  A  W  L  R  E  S  G  T  L  E  V  L  V  L  Q  D  D  T  S  H  L  R  A  T  R  F  D  Q  I  S  N  L  Q  Q  L  T  L  *  S  F  L  Y  N  F  D  R  G  I  *  N  F  S  S  V  N  *  Y  I  N  I  Y  I  P  L  L  C  E  C  P  I  L  P   </second_frame>
            <third_frame>   L  L  E  S  L  R  P  *  K  I  P  A  *  S  L  I  *  *  L  I  M  R  *  L  M  L  V  G  K  G  V  L  I  L  R  G  R  R  R  F  L  T  K  C  *  E  M  G  F  N  R  I  G  L  P  L  I  R  C  L  L  F  V  V  V  Q  D  C  G  R  L  R  G  V  C  L  T  R  *  F  I  E  E  L  I  R  I  Y  T  R  I  I  H  F  W  M  *  H  V  M  G  D  R  *  M  L  L  L  I  L  C  L  R  C  M  Q  R  I  F  C  P  T  K  S  P  T  V  L  *  F  V  G  V  Q  K  L  G  D  *  T  K  R  *  V  Y  L  M  R  *  S  V  L  A  *  N  *  T  G  F  H  T  I  L  Y  L  L  Y  M  Q  A  W  E  N  L  R  R  P  L  M  L  A  R  R  W  R  V  W  E  L  R  K  M  L  S  L  T  M  L  F  W  M  G  L  A  N  K  E  C  I  P  R  L  S  S  C  L  Q  K  *  K  L  K  S  F  H  L  T  Y  *  R  T  P  H  *  L  V  C  T  *  K  E  P  C  I  M  M  R  *  R  S  I  R  S  S  R  S  K  V  *  R  Q  M  L  F  F  I  A  N  L  L  M  P  C  V  K  K  A  L  W  S  I  R  R  C  C  L  M  R  *  R  R  K  G  Y  N  Q  M  L  L  H  I  T  L  *  S  M  L  L  V  N  R  Q  T  M  N  V  D  Q  T  M  S  H  I  L  Y  P  L  F  L  K  V  S  G  K  T  L  K  R  I  I  S  L  R  F  S  S  N  *  L  L  K  S  Q  L  V  G  R  K  L  M  L  K  D  R  T  C  S  A  F  *  V  F  S  I  R  C  M  N  Y  K  *  S  L  M  *  S  R  F  Q  Q  S  *  M  L  A   : A  D  A  V  H  L  M  K  L  H  S  Y  S  K  N  S  V  Y  L  I  T  K  F  M  G  W  H  M  D  F  S  W  G  R  G  K  V  Y  G  H  K  L  Y  L  F  S  M  K  *  S  R  W  T  L  Q  L  H  L  P  F  T  M  L  *  L  T  C  C  G  I  L  T  R :   N  K  V  L  N  W  L  Y  L  K  E  N  V  Q  K  C  G  K  I  H  G  P  L  L  V  W  I  C  I  *  C  L  Q  G  L  H  V  Q  W  S  T  H  G  C  L  V  Y  G  L  *  C  L  K  A  T  S  Y  Q  R  C  *   : A  F  *  L  A  G  A  S  T  A  R  *  Q  V  M  A  P  *  N  E  P  L  K  A  C  S  P  A  *  V  H  H  S  R  *  Q  S  A  T  L  G  G  S  Y  P  L  V  L  W  *  L  L  G  *  E  N  Q  V  H  W  K  C  L  F  F  K  M  I  Q  V  T  C  V  P  Q  G  L  I  K  F  L  I  Y  N  N  *  H  C  S  R  F  C  I  I  L  T  G  E  Y  K  I  F  P  V  *  I  S  I  *  I  Y  I  F  L  C  Y  V  N  V  L  F  Y  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0288L16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19293" stop="20479"/>
                    <exon start="21912" stop="22128"/>
                    <exon start="23086" stop="23270"/>
                    <exon start="23363" stop="23627"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1851</number_coding_nucleotides>
                  <number_encoded_amino_acids>617</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIRVFETMKDSGLKPNLVTYNALIDACGKGGADFKRASEIFDEMLRNGVQPDRITFNSLLAVCSGAGLWETARGLFNEMIYRGIDQDIYTYNTFLDVACNGGQIDVAFDIMSEMHAKNILPNQVTYSTVIRGCAKAGRLDKALSLFNEMKCAGIKLDRVSYNTLLAIYASLGKFEEALNVSKEMEGMGIKKDVVTYNALLDGFGKQGMYTKVKQLFAEMKAEKLSPNLLTYSTLISVYLKGALYHDAVEVYKEFKKQGLKADVVFYSKLIDALCKKGLVEYSSLLLNEMTKEGIQPNVVTYNSIINAFGESANNECGSDNVTHIVSAISQSKWENTEEDNIVKIFEQLAAQKSASGKKTNAERQDMLCILGVFHKMHELQIKPNVVTFSAILNACSRCSSFDEASLLLEELRLFDNQVYGVAHGLLMGQREGVWSQALSLFNEVKQMDSSTASAFYNALTDMLWHFDQKQGAQLVVLEGKRSEVWENTWSTSCLDLHLMSSGAACAMVHAWLLSIRSIVFEGHELPKMLSILTGWGKHSKITGDGALKRAIEGLLTSIGAPFQIAKCNIGRFISTGAVVTAWLRESGTLEVLVLQDDTSHLRATRFDQISNLQQLTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22769" e_stop="23270"/>
            <exon e_start="23363" e_stop="23745"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22769" e_stop="23270" e_length="502"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23271" i_stop="23362" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="23363" e_stop="23745" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22769" stop="23270"/>
              <exon start="23363" stop="23405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23078" stop="23270"/>
              <exon start="23363" stop="23745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23086" stop="23270"/>
              <exon start="23363" stop="23707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23109" stop="23270"/>
              <exon start="23363" stop="23713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552285" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGACTCATGTTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCGGAAGTGCTCAATTGGTTGTTAACTGACTAATATCACCTTTGCATTGCCATAAATTACCACTGACTCATATTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCGGAAGTGCTCAATTGGTTGTTAACTGACTAATATCACCTTTGCATTGCCATAAATTACTACTGACTCATATTTGGTGTCTTATCTAACTTTTTTCCAGAAACAAGGTGCTCAATTGGTTGTACTTGAAGGAAAACGTTCAGAAGTGTGGGAAAATACATGGTCCACTTCTTGTTTGGATCTGCATTTGATGTCTTCAGGGGCTGCATGTGCAATGGTCCACGCATGGTTGCTTAGTATACGGTCTATAGTGTTTGAAGGCCACGAGTTACCAAAGATGCTGAG : CATTTTGACTGGCTGGGGCAAGCACAGCAAGATAACAGGTGATGGCGCCTTAAAACGAGCCATTGAAGGCTTGCTCACCAGCATAGGTGCACCATTCCAGATAGCAAAGTGCAACATTGGGAGGTTCATATCCACTGGTGCTGTGGTAACTGCTTGGTTGAGAGAATCAGGTACACTGGAAGTGCTTGTTCTTCAAGATGATACAAGTCACTTGCGTGCCACAAGGTTTGATCAAATTTCTAATTTACAACAACTAACATTGTAGTCGTTTCTGTATAATTTTGACAGGGGAATATAAAATTTTTCCAGTGTAAATTAGTATATAAATATATATATTCCTTTGTTATGTGAATGTCCTATTCTACCGTCACTTTAAACTGAAC</gDNA_template>
            <first_frame> T  D  S  C  L  V  S  Y  L  T  F  F  Q  K  Q  G  A  Q  L  V  V  L  E  G  K  R  S  E  V  L  N  W  L  L  T  D  *  Y  H  L  C  I  A  I  N  Y  H  *  L  I  F  G  V  L  S  N  F  F  P  E  T  R  C  S  I  G  C  T  *  R  K  T  F  G  S  A  Q  L  V  V  N  *  L  I  S  P  L  H  C  H  K  L  L  L  T  H  I  W  C  L  I  *  L  F  S  R  N  K  V  L  N  W  L  Y  L  K  E  N  V  Q  K  C  G  K  I  H  G  P  L  L  V  W  I  C  I  *  C  L  Q  G  L  H  V  Q  W  S  T  H  G  C  L  V  Y  G  L  *  C  L  K  A  T  S  Y  Q  R  C  *   : A  F  *  L  A  G  A  S  T  A  R  *  Q  V  M  A  P  *  N  E  P  L  K  A  C  S  P  A  *  V  H  H  S  R  *  Q  S  A  T  L  G  G  S  Y  P  L  V  L  W  *  L  L  G  *  E  N  Q  V  H  W  K  C  L  F  F  K  M  I  Q  V  T  C  V  P  Q  G  L  I  K  F  L  I  Y  N  N  *  H  C  S  R  F  C  I  I  L  T  G  E  Y  K  I  F  P  V  *  I  S  I  *  I  Y  I  F  L  C  Y  V  N  V  L  F  Y  R  H  F  K  L  N </first_frame>
            <second_frame>  L  T  H  V  W  C  L  I  *  L  F  S  R  N  K  V  L  N  W  L  Y  L  K  E  N  V  R  K  C  S  I  G  C  *  L  T  N  I  T  F  A  L  P  *  I  T  T  D  S  Y  L  V  S  Y  L  T  F  F  Q  K  Q  G  A  Q  L  V  V  L  E  G  K  R  S  E  V  L  N  W  L  L  T  D  *  Y  H  L  C  I  A  I  N  Y  Y  *  L  I  F  G  V  L  S  N  F  F  P  E  T  R  C  S  I  G  C  T  *  R  K  T  F  R  S  V  G  K  Y  M  V  H  F  L  F  G  S  A  F  D  V  F  R  G  C  M  C  N  G  P  R  M  V  A  *  Y  T  V  Y  S  V  *  R  P  R  V  T  K  D  A  E  :  H  F  D  W  L  G  Q  A  Q  Q  D  N  R  *  W  R  L  K  T  S  H  *  R  L  A  H  Q  H  R  C  T  I  P  D  S  K  V  Q  H  W  E  V  H  I  H  W  C  C  G  N  C  L  V  E  R  I  R  Y  T  G  S  A  C  S  S  R  *  Y  K  S  L  A  C  H  K  V  *  S  N  F  *  F  T  T  T  N  I  V  V  V  S  V  *  F  *  Q  G  N  I  K  F  F  Q  C  K  L  V  Y  K  Y  I  Y  S  F  V  M  *  M  S  Y  S  T  V  T  L  N  *   </second_frame>
            <third_frame>   *  L  M  F  G  V  L  S  N  F  F  P  E  T  R  C  S  I  G  C  T  *  R  K  T  F  G  S  A  Q  L  V  V  N  *  L  I  S  P  L  H  C  H  K  L  P  L  T  H  I  W  C  L  I  *  L  F  S  R  N  K  V  L  N  W  L  Y  L  K  E  N  V  R  K  C  S  I  G  C  *  L  T  N  I  T  F  A  L  P  *  I  T  T  D  S  Y  L  V  S  Y  L  T  F  F  Q  K  Q  G  A  Q  L  V  V  L  E  G  K  R  S  E  V  W  E  N  T  W  S  T  S  C  L  D  L  H  L  M  S  S  G  A  A  C  A  M  V  H  A  W  L  L  S  I  R  S  I  V  F  E  G  H  E  L  P  K  M  L  S :   I  L  T  G  W  G  K  H  S  K  I  T  G  D  G  A  L  K  R  A  I  E  G  L  L  T  S  I  G  A  P  F  Q  I  A  K  C  N  I  G  R  F  I  S  T  G  A  V  V  T  A  W  L  R  E  S  G  T  L  E  V  L  V  L  Q  D  D  T  S  H  L  R  A  T  R  F  D  Q  I  S  N  L  Q  Q  L  T  L  *  S  F  L  Y  N  F  D  R  G  I  *  N  F  S  S  V  N  *  Y  I  N  I  Y  I  P  L  L  C  E  C  P  I  L  P  S  L  *  T  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0288L16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23041" stop="23270"/>
                    <exon start="23363" stop="23627"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITTDSYLVSYLTFFQKQGAQLVVLEGKRSEVWENTWSTSCLDLHLMSSGAACAMVHAWLLSIRSIVFEGHELPKMLSILTGWGKHSKITGDGALKRAIEGLLTSIGAPFQIAKCNIGRFISTGAVVTAWLRESGTLEVLVLQDDTSHLRATRFDQISNLQQLTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="34037" PGL_stop="26608"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34037" e_stop="33820"/>
            <exon e_start="33270" e_stop="33205"/>
            <exon e_start="32136" e_stop="32050"/>
            <exon e_start="27747" e_stop="27691"/>
            <exon e_start="27540" e_stop="27476"/>
            <exon e_start="27273" e_stop="27104"/>
            <exon e_start="26881" e_stop="26820"/>
            <exon e_start="26652" e_stop="26608"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.963"/>
          <exon-intron don_prob="0.813" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.712" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="34037" e_stop="33820" e_length="218"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="33819" i_stop="33271" i_length="549"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33270" e_stop="33205" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.813" acc_prob="0.997">
            <gDNA_intron_boundary i_start="33204" i_stop="32137" i_length="1068"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32136" e_stop="32050" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.947" acc_prob="0.977">
            <gDNA_intron_boundary i_start="32049" i_stop="27748" i_length="4302"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27747" e_stop="27691" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.822">
            <gDNA_intron_boundary i_start="27690" i_stop="27541" i_length="150"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27540" e_stop="27476" e_length="65"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="27475" i_stop="27274" i_length="202"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27273" e_stop="27104" e_length="170"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.952">
            <gDNA_intron_boundary i_start="27103" i_stop="26882" i_length="222"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="26881" e_stop="26820" e_length="62"/>
          </exon>
          <intron i_serial="7" don_prob="0.712" acc_prob="0.982">
            <gDNA_intron_boundary i_start="26819" i_stop="26653" i_length="167"/>
          </intron>
          <exon e_serial="8" e_score="0.956">
            <gDNA_exon_boundary e_start="26652" e_stop="26608" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34037" stop="33820"/>
              <exon start="33270" stop="33205"/>
              <exon start="32136" stop="32050"/>
              <exon start="27747" stop="27691"/>
              <exon start="27540" stop="27476"/>
              <exon start="27273" stop="27242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34004" stop="33820"/>
              <exon start="33270" stop="33205"/>
              <exon start="32136" stop="32050"/>
              <exon start="27747" stop="27691"/>
              <exon start="27540" stop="27476"/>
              <exon start="27273" stop="27104"/>
              <exon start="26881" stop="26820"/>
              <exon start="26652" stop="26639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34004" stop="33820"/>
              <exon start="33270" stop="33205"/>
              <exon start="32136" stop="32050"/>
              <exon start="27747" stop="27691"/>
              <exon start="27540" stop="27476"/>
              <exon start="27273" stop="27188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33987" stop="33820"/>
              <exon start="33270" stop="33205"/>
              <exon start="32136" stop="32050"/>
              <exon start="27747" stop="27691"/>
              <exon start="27540" stop="27476"/>
              <exon start="27273" stop="27104"/>
              <exon start="26881" stop="26820"/>
              <exon start="26652" stop="26608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33969" stop="33820"/>
              <exon start="33270" stop="33205"/>
              <exon start="32136" stop="32050"/>
              <exon start="27747" stop="27691"/>
              <exon start="27540" stop="27476"/>
              <exon start="27273" stop="27104"/>
              <exon start="26881" stop="26852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337334" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAAACCCTTGCGCATCACAGCAGAGAGAACCAACCCCTGAAGCTCAACTGAGCAGCGCGAGATCTGTTTGTGCTAATCACTAAGGGACGTCAATACTCTCTCTTGCCGGCAATGGCATCCAGCTACTTCTATGTATGCACAATCATATCAATTATTCTCTACGTTTCCGCCACTGCCGCTGCTGATTCAATTCAAGGATGTGGGGGGTTTGTTGAG : GCAAGTTCGGAACTGATCAAGTCAAGGAAGTCAAGCGATCCGAAATTGGATTATTCTAATATCATT : GTTGAGCTTCGCACATTGGATGGCTTGGTGAAGGAAAGAACACACTGTGCCCCTAATGGTTATTACTTCATTCCAGTGTATGATAAG : GGTTCTTTCTTGATCAAAGTCAATGGACCAGAGGGGTGGTCATGGGATCCTGAACAA : GTACCTGTTTCAATTGATCATACTGGCTGCAATGGCAATGAAGATATAAATTTTCGCTTCACCGG : GTTCACTGTATCTGGACGAATTGTGGGAAATGATGGTGGGGAAAGCTGTGCTCTGAAAGATGGAGGTCCATCAAATGTGAAAGTTGAGTTATTGTCTCCCACAGGTGGTGTTGTGTCCTCTGCATTATCAACACCCAGAGGAACATACTCCTTCTCAAACGCTATACCCG : GGAAGTACAAATTACGTGCATCACGTCATGACTTGAATGTTCAAGTTAGAGGATCGGCCGAG : ATTGATTTGGGTTTCGAAAATAGAATATTGGAGGACTTCTTCTTT</gDNA_template>
            <first_frame> S  K  P  L  R  I  T  A  E  R  T  N  P  *  S  S  T  E  Q  R  E  I  C  L  C  *  S  L  R  D  V  N  T  L  S  C  R  Q  W  H  P  A  T  S  M  Y  A  Q  S  Y  Q  L  F  S  T  F  P  P  L  P  L  L  I  Q  F  K  D  V  G  G  L  L  R :   Q  V  R  N  *  S  S  Q  G  S  Q  A  I  R  N  W  I  I  L  I  S  L :   L  S  F  A  H  W  M  A  W  *  R  K  E  H  T  V  P  L  M  V  I  T  S  F  Q  C  M  I  R :   V  L  S  *  S  K  S  M  D  Q  R  G  G  H  G  I  L  N  K :   Y  L  F  Q  L  I  I  L  A  A  M  A  M  K  I  *  I  F  A  S  P   : G  S  L  Y  L  D  E  L  W  E  M  M  V  G  K  A  V  L  *  K  M  E  V  H  Q  M  *  K  L  S  Y  C  L  P  Q  V  V  L  C  P  L  H  Y  Q  H  P  E  E  H  T  P  S  Q  T  L  Y  P  :  G  S  T  N  Y  V  H  H  V  M  T  *  M  F  K  L  E  D  R  P  R :   L  I  W  V  S  K  I  E  Y  W  R  T  S  S   </first_frame>
            <second_frame>  Q  N  P  C  A  S  Q  Q  R  E  P  T  P  E  A  Q  L  S  S  A  R  S  V  C  A  N  H  *  G  T  S  I  L  S  L  A  G  N  G  I  Q  L  L  L  C  M  H  N  H  I  N  Y  S  L  R  F  R  H  C  R  C  *  F  N  S  R  M  W  G  V  C  *   : G  K  F  G  T  D  Q  V  K  E  V  K  R  S  E  I  G  L  F  *  Y  H   : C  *  A  S  H  I  G  W  L  G  E  G  K  N  T  L  C  P  *  W  L  L  L  H  S  S  V  *  *   : G  F  F  L  D  Q  S  Q  W  T  R  G  V  V  M  G  S  *  T   : S  T  C  F  N  *  S  Y  W  L  Q  W  Q  *  R  Y  K  F  S  L  H  R  :  V  H  C  I  W  T  N  C  G  K  *  W  W  G  K  L  C  S  E  R  W  R  S  I  K  C  E  S  *  V  I  V  S  H  R  W  C  C  V  L  C  I  I  N  T  Q  R  N  I  L  L  L  K  R  Y  T  R :   E  V  Q  I  T  C  I  T  S  *  L  E  C  S  S  *  R  I  G  R   : D  *  F  G  F  R  K  *  N  I  G  G  L  L  L  </second_frame>
            <third_frame>   K  T  L  A  H  H  S  R  E  N  Q  P  L  K  L  N  *  A  A  R  D  L  F  V  L  I  T  K  G  R  Q  Y  S  L  L  P  A  M  A  S  S  Y  F  Y  V  C  T  I  I  S  I  I  L  Y  V  S  A  T  A  A  A  D  S  I  Q  G  C  G  G  F  V  E  :  A  S  S  E  L  I  K  S  R  K  S  S  D  P  K  L  D  Y  S  N  I  I  :  V  E  L  R  T  L  D  G  L  V  K  E  R  T  H  C  A  P  N  G  Y  Y  F  I  P  V  Y  D  K  :  G  S  F  L  I  K  V  N  G  P  E  G  W  S  W  D  P  E  Q  :  V  P  V  S  I  D  H  T  G  C  N  G  N  E  D  I  N  F  R  F  T  G :   F  T  V  S  G  R  I  V  G  N  D  G  G  E  S  C  A  L  K  D  G  G  P  S  N  V  K  V  E  L  L  S  P  T  G  G  V  V  S  S  A  L  S  T  P  R  G  T  Y  S  F  S  N  A  I  P   : G  K  Y  K  L  R  A  S  R  H  D  L  N  V  Q  V  R  G  S  A  E  :  I  D  L  G  F  E  N  R  I  L  E  D  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0288L16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33984" stop="33820"/>
                    <exon start="33270" stop="33205"/>
                    <exon start="32136" stop="32050"/>
                    <exon start="27747" stop="27691"/>
                    <exon start="27540" stop="27476"/>
                    <exon start="27273" stop="27104"/>
                    <exon start="26881" stop="26820"/>
                    <exon start="26652" stop="26608"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AARDLFVLITKGRQYSLLPAMASSYFYVCTIISIILYVSATAAADSIQGCGGFVEASSELIKSRKSSDPKLDYSNIIVELRTLDGLVKERTHCAPNGYYFIPVYDKGSFLIKVNGPEGWSWDPEQVPVSIDHTGCNGNEDINFRFTGFTVSGRIVGNDGGESCALKDGGPSNVKVELLSPTGGVVSSALSTPRGTYSFSNAIPGKYKLRASRHDLNVQVRGSAEIDLGFENRILEDFFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="36774" PGL_stop="35611"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36774" e_stop="35611"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="36774" e_stop="35611" e_length="1164"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36774" stop="36067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36773" stop="36414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36355" stop="35611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCGGAAAGGTATACAAAGGAGTTATCGATGGTGACACGAAAGTTGCAATCAAAAGATCAAATCCATCTTCAGAACAAGGAGTCAATGAATTCCAAACTGAAATCGAGATGCTCTCAAAGCTAAGGCATCGACATTTAGTGTCCTTGATCGGATTTTGTGAAGAGAACAATGAAATGGTCCTTGTTTATGACCACATGGCACATGGAACATTAAGGGAGCATCTTTACAAAGGTAACAAAACTATACTATCTTGGAAGCAAAGGTTGGAGATTTGCATTGGGTCAGCCAGAGGACTTCATTACCTTCACACAGGAGCTAAATACACTATTATACATAGAGATGTGAAAAGTACAAACATTTTGTTAAATGACAAATGGGTTGCTAAGGTTTCAGATTTTGGACTTTCCAAAACAGGTCCAAACATGAACCAAGGACATGTTTCAACAGTCGTAAAGGGTAGCTTCGGGTATTTAGATCCTGAATACTTCAGAAGACAACAATTGACTGAAAAATCAGATGTGTACTCGTATGGTGTTGTCCTATTTGAAGTACTGTGTGCAAGGCCAGCTCTTAACTCAAATCTTCCGAAAGAACAAGTTAGTCTTGCAGATTGGGCATTAGCTTGTCAAAGGAAAGGGAATTTAGAAGATATTATTGATCCACATTTGAAAGGCAAGATCAATCCTGAATGCTTGAAAAAATTTGCAGAAACAGCTGAGAAATGCTTAGCTGATAATGGTATAAATCGTCCGTCCATGGGTGATGTGTTATGGAATCTTGAATATGCCCTTCAGCTACAAGAAAATCCAGATGGTGTTTTATCAACTTCCGAGGCAACGAAACAGGTTGATCATGACAATGCTGATCAACACAGTTTGATAGCTATGCATAGAAGCACTTTGAGCCTTGAAAGTGAAAATGAAAATGAAAATGCTGATGGTAAAACAGATGATGTCTTTTCACAGATTGTGAGTCCAACAGGAAGGTAATAGAAAATATATATACATTTCACTATACATATTATGTATCAATTATATATATTTTTAAAAAAATCTAAGGAGCATAGCTAGCGCACGGTTGATTCCTTTGTGTCACATTTAAGTATTTGTAAATTTGTATATGTATATTTAAGCATATAATATAACAAAAATGTATTGTACTT</gDNA_template>
            <first_frame> I  R  K  G  I  Q  R  S  Y  R  W  *  H  E  S  C  N  Q  K  I  K  S  I  F  R  T  R  S  Q  *  I  P  N  *  N  R  D  A  L  K  A  K  A  S  T  F  S  V  L  D  R  I  L  *  R  E  Q  *  N  G  P  C  L  *  P  H  G  T  W  N  I  K  G  A  S  L  Q  R  *  Q  N  Y  T  I  L  E  A  K  V  G  D  L  H  W  V  S  Q  R  T  S  L  P  S  H  R  S  *  I  H  Y  Y  T  *  R  C  E  K  Y  K  H  F  V  K  *  Q  M  G  C  *  G  F  R  F  W  T  F  Q  N  R  S  K  H  E  P  R  T  C  F  N  S  R  K  G  *  L  R  V  F  R  S  *  I  L  Q  K  T  T  I  D  *  K  I  R  C  V  L  V  W  C  C  P  I  *  S  T  V  C  K  A  S  S  *  L  K  S  S  E  R  T  S  *  S  C  R  L  G  I  S  L  S  K  E  R  E  F  R  R  Y  Y  *  S  T  F  E  R  Q  D  Q  S  *  M  L  E  K  I  C  R  N  S  *  E  M  L  S  *  *  W  Y  K  S  S  V  H  G  *  C  V  M  E  S  *  I  C  P  S  A  T  R  K  S  R  W  C  F  I  N  F  R  G  N  E  T  G  *  S  *  Q  C  *  S  T  Q  F  D  S  Y  A  *  K  H  F  E  P  *  K  *  K  *  K  *  K  C  *  W  *  N  R  *  C  L  F  T  D  C  E  S  N  R  K  V  I  E  N  I  Y  T  F  H  Y  T  Y  Y  V  S  I  I  Y  I  F  K  K  I  *  G  A  *  L  A  H  G  *  F  L  C  V  T  F  K  Y  L  *  I  C  I  C  I  F  K  H  I  I  *  Q  K  C  I  V  L </first_frame>
            <second_frame>  F  G  K  V  Y  K  G  V  I  D  G  D  T  K  V  A  I  K  R  S  N  P  S  S  E  Q  G  V  N  E  F  Q  T  E  I  E  M  L  S  K  L  R  H  R  H  L  V  S  L  I  G  F  C  E  E  N  N  E  M  V  L  V  Y  D  H  M  A  H  G  T  L  R  E  H  L  Y  K  G  N  K  T  I  L  S  W  K  Q  R  L  E  I  C  I  G  S  A  R  G  L  H  Y  L  H  T  G  A  K  Y  T  I  I  H  R  D  V  K  S  T  N  I  L  L  N  D  K  W  V  A  K  V  S  D  F  G  L  S  K  T  G  P  N  M  N  Q  G  H  V  S  T  V  V  K  G  S  F  G  Y  L  D  P  E  Y  F  R  R  Q  Q  L  T  E  K  S  D  V  Y  S  Y  G  V  V  L  F  E  V  L  C  A  R  P  A  L  N  S  N  L  P  K  E  Q  V  S  L  A  D  W  A  L  A  C  Q  R  K  G  N  L  E  D  I  I  D  P  H  L  K  G  K  I  N  P  E  C  L  K  K  F  A  E  T  A  E  K  C  L  A  D  N  G  I  N  R  P  S  M  G  D  V  L  W  N  L  E  Y  A  L  Q  L  Q  E  N  P  D  G  V  L  S  T  S  E  A  T  K  Q  V  D  H  D  N  A  D  Q  H  S  L  I  A  M  H  R  S  T  L  S  L  E  S  E  N  E  N  E  N  A  D  G  K  T  D  D  V  F  S  Q  I  V  S  P  T  G  R  *  *  K  I  Y  I  H  F  T  I  H  I  M  Y  Q  L  Y  I  F  L  K  K  S  K  E  H  S  *  R  T  V  D  S  F  V  S  H  L  S  I  C  K  F  V  Y  V  Y  L  S  I  *  Y  N  K  N  V  L  Y   </second_frame>
            <third_frame>   S  E  R  Y  T  K  E  L  S  M  V  T  R  K  L  Q  S  K  D  Q  I  H  L  Q  N  K  E  S  M  N  S  K  L  K  S  R  C  S  Q  S  *  G  I  D  I  *  C  P  *  S  D  F  V  K  R  T  M  K  W  S  L  F  M  T  T  W  H  M  E  H  *  G  S  I  F  T  K  V  T  K  L  Y  Y  L  G  S  K  G  W  R  F  A  L  G  Q  P  E  D  F  I  T  F  T  Q  E  L  N  T  L  L  Y  I  E  M  *  K  V  Q  T  F  C  *  M  T  N  G  L  L  R  F  Q  I  L  D  F  P  K  Q  V  Q  T  *  T  K  D  M  F  Q  Q  S  *  R  V  A  S  G  I  *  I  L  N  T  S  E  D  N  N  *  L  K  N  Q  M  C  T  R  M  V  L  S  Y  L  K  Y  C  V  Q  G  Q  L  L  T  Q  I  F  R  K  N  K  L  V  L  Q  I  G  H  *  L  V  K  G  K  G  I  *  K  I  L  L  I  H  I  *  K  A  R  S  I  L  N  A  *  K  N  L  Q  K  Q  L  R  N  A  *  L  I  M  V  *  I  V  R  P  W  V  M  C  Y  G  I  L  N  M  P  F  S  Y  K  K  I  Q  M  V  F  Y  Q  L  P  R  Q  R  N  R  L  I  M  T  M  L  I  N  T  V  *  *  L  C  I  E  A  L  *  A  L  K  V  K  M  K  M  K  M  L  M  V  K  Q  M  M  S  F  H  R  L  *  V  Q  Q  E  G  N  R  K  Y  I  Y  I  S  L  Y  I  L  C  I  N  Y  I  Y  F  *  K  N  L  R  S  I  A  S  A  R  L  I  P  L  C  H  I  *  V  F  V  N  L  Y  M  Y  I  *  A  Y  N  I  T  K  M  Y  C  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0288L16.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36773" stop="35784"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>987</number_coding_nucleotides>
                  <number_encoded_amino_acids>329</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGKVYKGVIDGDTKVAIKRSNPSSEQGVNEFQTEIEMLSKLRHRHLVSLIGFCEENNEMVLVYDHMAHGTLREHLYKGNKTILSWKQRLEICIGSARGLHYLHTGAKYTIIHRDVKSTNILLNDKWVAKVSDFGLSKTGPNMNQGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSYGVVLFEVLCARPALNSNLPKEQVSLADWALACQRKGNLEDIIDPHLKGKINPECLKKFAETAEKCLADNGINRPSMGDVLWNLEYALQLQENPDGVLSTSEATKQVDHDNADQHSLIAMHRSTLSLESENENENADGKTDDVFSQIVSPTGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="41273" PGL_stop="40558"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41273" e_stop="40558"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="41273" e_stop="40558" e_length="716"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41273" stop="40558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41272" stop="40676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362713" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCTAATTGCCGATATTTTTCACTAGCTGAGATCAAACAGGCCACTAAGAACTTCGACGAATCATATGTCATTGGAGTTGGTGGATTTGGAAAAGTGTACAAAGGAGTTATTGATGGTGACACGAAAGTTGCAATAAAAAGATCAAACCCATCTTCACAACAAGGGGTTAACGAATTTCAAACTGAAATTGAGTTGCTTTCAATGCTAAGGCATAGACATTTAGTGTCCCTAATCGGATTTTGTGAAGAGAATAATGAAATGGTCCTTGTCTATGACCACATGGCATACGGAACATTAAGAGAACATCTTTATAAAGGTAATAAAACTGTACTATCTTGGAAGCAAAGGTTGGAGATTTGTATTGGAGCAGCTAGAGGACTTCATTACCTTCATACAGGATCTAAATACACCATCATTCATAGGGATGTGAAAAGTACAAACATTTTGTTAAATGACAAGTGGGTTGCTAAGGTATCAGATTTTGGACTTTCAAAAACAGGTCCAAACATGAACCAAGGACATGTTTCAACAGTCGTAAAGGGTAGCTTTGGTTATTTGGATCCCGAATACTTCAGAAGACAACAATTGACTGAAAAATCAGATGTATACTCATTTGGGGTTGTCCTGTTTGAAGTATTGTGTGCAAGGCCAGCGCTTAATCCAACCCGTTCAAAAGAACAAGTTAGTCTTGCAGATTGGGCATTAGCTTGTCAA</gDNA_template>
            <first_frame> L  L  I  A  D  I  F  H  *  L  R  S  N  R  P  L  R  T  S  T  N  H  M  S  L  E  L  V  D  L  E  K  C  T  K  E  L  L  M  V  T  R  K  L  Q  *  K  D  Q  T  H  L  H  N  K  G  L  T  N  F  K  L  K  L  S  C  F  Q  C  *  G  I  D  I  *  C  P  *  S  D  F  V  K  R  I  M  K  W  S  L  S  M  T  T  W  H  T  E  H  *  E  N  I  F  I  K  V  I  K  L  Y  Y  L  G  S  K  G  W  R  F  V  L  E  Q  L  E  D  F  I  T  F  I  Q  D  L  N  T  P  S  F  I  G  M  *  K  V  Q  T  F  C  *  M  T  S  G  L  L  R  Y  Q  I  L  D  F  Q  K  Q  V  Q  T  *  T  K  D  M  F  Q  Q  S  *  R  V  A  L  V  I  W  I  P  N  T  S  E  D  N  N  *  L  K  N  Q  M  Y  T  H  L  G  L  S  C  L  K  Y  C  V  Q  G  Q  R  L  I  Q  P  V  Q  K  N  K  L  V  L  Q  I  G  H  *  L  V   </first_frame>
            <second_frame>  F  *  L  P  I  F  F  T  S  *  D  Q  T  G  H  *  E  L  R  R  I  I  C  H  W  S  W  W  I  W  K  S  V  Q  R  S  Y  *  W  *  H  E  S  C  N  K  K  I  K  P  I  F  T  T  R  G  *  R  I  S  N  *  N  *  V  A  F  N  A  K  A  *  T  F  S  V  P  N  R  I  L  *  R  E  *  *  N  G  P  C  L  *  P  H  G  I  R  N  I  K  R  T  S  L  *  R  *  *  N  C  T  I  L  E  A  K  V  G  D  L  Y  W  S  S  *  R  T  S  L  P  S  Y  R  I  *  I  H  H  H  S  *  G  C  E  K  Y  K  H  F  V  K  *  Q  V  G  C  *  G  I  R  F  W  T  F  K  N  R  S  K  H  E  P  R  T  C  F  N  S  R  K  G  *  L  W  L  F  G  S  R  I  L  Q  K  T  T  I  D  *  K  I  R  C  I  L  I  W  G  C  P  V  *  S  I  V  C  K  A  S  A  *  S  N  P  F  K  R  T  S  *  S  C  R  L  G  I  S  L  S  </second_frame>
            <third_frame>   S  N  C  R  Y  F  S  L  A  E  I  K  Q  A  T  K  N  F  D  E  S  Y  V  I  G  V  G  G  F  G  K  V  Y  K  G  V  I  D  G  D  T  K  V  A  I  K  R  S  N  P  S  S  Q  Q  G  V  N  E  F  Q  T  E  I  E  L  L  S  M  L  R  H  R  H  L  V  S  L  I  G  F  C  E  E  N  N  E  M  V  L  V  Y  D  H  M  A  Y  G  T  L  R  E  H  L  Y  K  G  N  K  T  V  L  S  W  K  Q  R  L  E  I  C  I  G  A  A  R  G  L  H  Y  L  H  T  G  S  K  Y  T  I  I  H  R  D  V  K  S  T  N  I  L  L  N  D  K  W  V  A  K  V  S  D  F  G  L  S  K  T  G  P  N  M  N  Q  G  H  V  S  T  V  V  K  G  S  F  G  Y  L  D  P  E  Y  F  R  R  Q  Q  L  T  E  K  S  D  V  Y  S  F  G  V  V  L  F  E  V  L  C  A  R  P  A  L  N  P  T  R  S  K  E  Q  V  S  L  A  D  W  A  L  A  C  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0288L16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41271" stop="40558"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNCRYFSLAEIKQATKNFDESYVIGVGGFGKVYKGVIDGDTKVAIKRSNPSSQQGVNEFQTEIELLSMLRHRHLVSLIGFCEENNEMVLVYDHMAYGTLREHLYKGNKTVLSWKQRLEICIGAARGLHYLHTGSKYTIIHRDVKSTNILLNDKWVAKVSDFGLSKTGPNMNQGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPTRSKEQVSLADWALACQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="59528" PGL_stop="59031"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59528" e_stop="59031"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="59528" e_stop="59031" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59528" stop="59031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475388" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGGAATTGCGTTTCGCCATAGACAGTGAAGCTCGAAAGTTGAGAGCTTTTTTTCTGCTCTCAAATTTAGTCCATTAATGCTTCAAAGAATGAAACTTTGATGGGCAGAGATGTTCATCATCTTCTTAGTCTTGTTAAAAAGTACCAAAACCATCGCAAACCAATTCAGCAAATTCATACTCAGTTAATATTCACCACTGCAGAAAACACCTTCAACTCAACTTCTTCAATACCCATTTTATTAACTCTATGGAACTCTTTAATTCGGCATTACTCTCTTGGTATTTTCCCACAAGAATCTTTTCTTCTGTTCAAACAATTGCGGTTACAGTATCACCCCATTATCTTTTTTGATAGCTTTACATATTCATTCTTGATTAAAGGATCAGCTAATTTAGGAAAGTTTTGTATTGGGAAGCAGATTCATTGTTTGAGTTTGAAGGATGGATTTGAATCTCATGTTTATGTGCAAACTGCATTGGTTAATATGTATGGGG</gDNA_template>
            <first_frame> L  G  I  A  F  R  H  R  Q  *  S  S  K  V  E  S  F  F  S  A  L  K  F  S  P  L  M  L  Q  R  M  K  L  *  W  A  E  M  F  I  I  F  L  V  L  L  K  S  T  K  T  I  A  N  Q  F  S  K  F  I  L  S  *  Y  S  P  L  Q  K  T  P  S  T  Q  L  L  Q  Y  P  F  Y  *  L  Y  G  T  L  *  F  G  I  T  L  L  V  F  S  H  K  N  L  F  F  C  S  N  N  C  G  Y  S  I  T  P  L  S  F  L  I  A  L  H  I  H  S  *  L  K  D  Q  L  I  *  E  S  F  V  L  G  S  R  F  I  V  *  V  *  R  M  D  L  N  L  M  F  M  C  K  L  H  W  L  I  C  M  G </first_frame>
            <second_frame>  L  E  L  R  F  A  I  D  S  E  A  R  K  L  R  A  F  F  L  L  S  N  L  V  H  *  C  F  K  E  *  N  F  D  G  Q  R  C  S  S  S  S  *  S  C  *  K  V  P  K  P  S  Q  T  N  S  A  N  S  Y  S  V  N  I  H  H  C  R  K  H  L  Q  L  N  F  F  N  T  H  F  I  N  S  M  E  L  F  N  S  A  L  L  S  W  Y  F  P  T  R  I  F  S  S  V  Q  T  I  A  V  T  V  S  P  H  Y  L  F  *  *  L  Y  I  F  I  L  D  *  R  I  S  *  F  R  K  V  L  Y  W  E  A  D  S  L  F  E  F  E  G  W  I  *  I  S  C  L  C  A  N  C  I  G  *  Y  V  W   </second_frame>
            <third_frame>   W  N  C  V  S  P  *  T  V  K  L  E  S  *  E  L  F  F  C  S  Q  I  *  S  I  N  A  S  K  N  E  T  L  M  G  R  D  V  H  H  L  L  S  L  V  K  K  Y  Q  N  H  R  K  P  I  Q  Q  I  H  T  Q  L  I  F  T  T  A  E  N  T  F  N  S  T  S  S  I  P  I  L  L  T  L  W  N  S  L  I  R  H  Y  S  L  G  I  F  P  Q  E  S  F  L  L  F  K  Q  L  R  L  Q  Y  H  P  I  I  F  F  D  S  F  T  Y  S  F  L  I  K  G  S  A  N  L  G  K  F  C  I  G  K  Q  I  H  C  L  S  L  K  D  G  F  E  S  H  V  Y  V  Q  T  A  L  V  N  M  Y  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0288L16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59457" stop="59032"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SINASKNETLMGRDVHHLLSLVKKYQNHRKPIQQIHTQLIFTTAENTFNSTSSIPILLTLWNSLIRHYSLGIFPQESFLLFKQLRLQYHPIIFFDSFTYSFLIKGSANLGKFCIGKQIHCLSLKDGFESHVYVQTALVNMYG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="71992" PGL_stop="71596"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71992" e_stop="71596"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="71992" e_stop="71596" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71992" stop="71764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71982" stop="71596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71926" stop="71600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACACGTTCCTTGCTGAAAATGGCTATAAAAGGAATTCAATTTTTGATTTTTTTCAAACACTGAAAATTTTTCCTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTTTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGGTATTTCTTTAACAGGTTTAATCTGTTTTATCTTGGGAGAAATTAATCCATAACCATGGGTACAATGAGGGGATTAAATTTCTTAAGGACAGACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTTTATATTATTTCTGCTTCATCTTATTTCTGTTTCTTTTTATTAACCTTATAAATACAATTATTGTAAGAATAACAACAGTACG</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  K  E  F  N  F  *  F  F  S  N  T  E  N  F  S  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  F  *  V  R  *  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  N  L  F  Y  L  G  R  N  *  S  I  T  M  G  T  M  R  G  L  N  F  L  R  T  D  S  S  F  C  G  L  G  L  I  L  V  F  Y  I  I  S  A  S  S  Y  F  C  F  F  L  L  T  L  *  I  Q  L  L  *  E  *  Q  Q  Y  </first_frame>
            <second_frame>  D  T  F  L  A  E  N  G  Y  K  R  N  S  I  F  D  F  F  Q  T  L  K  I  F  P  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  V  V  F  K  F  V  E  V  K  E  V  *  G  T  G  I  S  L  T  G  L  I  C  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  D  *  I  S  *  G  Q  T  V  V  S  V  D  S  D  *  F  L  Y  F  I  L  F  L  L  H  L  I  S  V  S  F  Y  *  P  Y  K  Y  N  Y  C  K  N  N  N  S  T </second_frame>
            <third_frame>   T  R  S  L  L  K  M  A  I  K  G  I  Q  F  L  I  F  F  K  H  *  K  F  F  L  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  K  K  F  E  V  P  V  F  L  *  Q  V  *  S  V  L  S  W  E  K  L  I  H  N  H  G  Y  N  E  G  I  K  F  L  K  D  R  Q  *  F  L  W  T  R  I  N  S  C  I  L  Y  Y  F  C  F  I  L  F  L  F  L  F  I  N  L  I  N  T  I  I  V  R  I  T  T  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0288L16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="85871" PGL_stop="85356"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85871" e_stop="85356"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="85871" e_stop="85356" e_length="516"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85871" stop="85356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85871" stop="85356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85870" stop="85372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308774" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAGATTCAACATATATAAACATAATTTCTTATGGGTATTTTTTCTCATACTCCTAACAAGGGAAAGTTTGATTTAAGCGATTCCTTCCAATGCGATATAAGCAGACAAAGAGTCACGACTTATAACGTAAGGCATGTCAAAAGGTGCAAAAGTGTTGTGATGAAGAGAAGGATACGCGTAGAACGTTCTAGAAGGTTCGAGGATGAGATTGGAAGTAAAGTCAAGATACTCAAGAAGTTGATTCCAATTAACTGTGAAGATTTGGGGCTGGAAGGGATTTTCAGAGAGACAGCTGATTACATTTTGGCTTTAGAAATGAGAATTAAGGCTATGCAAGATATGGTAAATGTATTGTCACATTCTAATCACTAAATCATGTATTATTTTATTATTATATTGTGTCAAAAATGACTTATATACAGATTAATTAACTGATGTTGTTTCTTTGTTCATTCATCAATGTTAATGTGAATGTCTACAATTGTGAAATTGCAAAACTATATAGTTATGTAAA</gDNA_template>
            <first_frame> *  R  F  N  I  Y  K  H  N  F  L  W  V  F  F  L  I  L  L  T  R  E  S  L  I  *  A  I  P  S  N  A  I  *  A  D  K  E  S  R  L  I  T  *  G  M  S  K  G  A  K  V  L  *  *  R  E  G  Y  A  *  N  V  L  E  G  S  R  M  R  L  E  V  K  S  R  Y  S  R  S  *  F  Q  L  T  V  K  I  W  G  W  K  G  F  S  E  R  Q  L  I  T  F  W  L  *  K  *  E  L  R  L  C  K  I  W  *  M  Y  C  H  I  L  I  T  K  S  C  I  I  L  L  L  Y  C  V  K  N  D  L  Y  T  D  *  L  T  D  V  V  S  L  F  I  H  Q  C  *  C  E  C  L  Q  L  *  N  C  K  T  I  *  L  C  K </first_frame>
            <second_frame>  K  D  S  T  Y  I  N  I  I  S  Y  G  Y  F  F  S  Y  S  *  Q  G  K  V  *  F  K  R  F  L  P  M  R  Y  K  Q  T  K  S  H  D  L  *  R  K  A  C  Q  K  V  Q  K  C  C  D  E  E  K  D  T  R  R  T  F  *  K  V  R  G  *  D  W  K  *  S  Q  D  T  Q  E  V  D  S  N  *  L  *  R  F  G  A  G  R  D  F  Q  R  D  S  *  L  H  F  G  F  R  N  E  N  *  G  Y  A  R  Y  G  K  C  I  V  T  F  *  S  L  N  H  V  L  F  Y  Y  Y  I  V  S  K  M  T  Y  I  Q  I  N  *  L  M  L  F  L  C  S  F  I  N  V  N  V  N  V  Y  N  C  E  I  A  K  L  Y  S  Y  V   </second_frame>
            <third_frame>   K  I  Q  H  I  *  T  *  F  L  M  G  I  F  S  H  T  P  N  K  G  K  F  D  L  S  D  S  F  Q  C  D  I  S  R  Q  R  V  T  T  Y  N  V  R  H  V  K  R  C  K  S  V  V  M  K  R  R  I  R  V  E  R  S  R  R  F  E  D  E  I  G  S  K  V  K  I  L  K  K  L  I  P  I  N  C  E  D  L  G  L  E  G  I  F  R  E  T  A  D  Y  I  L  A  L  E  M  R  I  K  A  M  Q  D  M  V  N  V  L  S  H  S  N  H  *  I  M  Y  Y  F  I  I  I  L  C  Q  K  *  L  I  Y  R  L  I  N  *  C  C  F  F  V  H  S  S  M  L  M  *  M  S  T  I  V  K  L  Q  N  Y  I  V  M  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0288L16.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85845" stop="85498"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLMGIFSHTPNKGKFDLSDSFQCDISRQRVTTYNVRHVKRCKSVVMKRRIRVERSRRFEDEIGSKVKILKKLIPINCEDLGLEGIFRETADYILALEMRIKAMQDMVNVLSHSNH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="87882" PGL_stop="88627"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87882" e_stop="88627"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="87882" e_stop="88627" e_length="746"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87882" stop="88331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87884" stop="88497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87891" stop="88375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87895" stop="88455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87895" stop="88375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87902" stop="88204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87910" stop="88446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87914" stop="88264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87916" stop="88549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87916" stop="88499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87916" stop="88496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87916" stop="88468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87917" stop="88409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87918" stop="88409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87918" stop="88409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87920" stop="88522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87920" stop="88452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87920" stop="88448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87924" stop="88470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87925" stop="88494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87925" stop="88411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87927" stop="88494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87927" stop="88494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87927" stop="88494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87927" stop="88494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87927" stop="88437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87932" stop="88556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87932" stop="88448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87932" stop="88419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87932" stop="88416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87932" stop="88374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87936" stop="88485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87949" stop="88453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87955" stop="88304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87966" stop="88528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88078" stop="88511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88227" stop="88627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270580" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAAAATAAAAAAATATCTTCTTCTTCTTCACCCTAACACAGAGCAAATAAAAATGGCGTCCATAGCCGGTGTTAGTATAACAATCCCAACAATTTCATCCGATTCACCCAAAATTCAGCCCTTGAAATTGCAAACCCTAAACAGCCCATGGAAGAAATCAAGTCAATTGGGTTACAGGAGGATGATGTATGTAGTGGTACCCAGAGTAGTTCCGGATAAGAAGCTATCTGATTTAGTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGGCATGGGATGTGGTGGAAGAGACGAGTGCAGCAGCGAGCCATGCGAGGGATAAGAAGAAGGAATCAGATGTACTGGAGAATTATTGCAAGGATAATCCAGAAACTGATGAATGCCGCACTTACGATAATTAATTATGATGATGATTAGTAGCAGCTACTCATGTCATGTCTTGTGTTCTTTTCAAATGGTAATCTGTTTTATCAAAACTTAAATCTTCTCTTATGTTATGTATGGTATGGTGTTTAATTATACATACTGTTACCATGAATTCCAATTTATGTGATATAGTTTGAACGAACGAATTGAAAATGATAAAGTTAGATCAGAGCAGAAATATAACCAGAGAGCTTTAGTTTAAACAATTGTTCTCTGCTAGTAATGCTACTTTCAATTTTCAGTTTACATGAATAAATAAAGCATCTTTTACAACAACAAAAAA</gDNA_template>
            <first_frame> K  K  I  K  K  Y  L  L  L  L  H  P  N  T  E  Q  I  K  M  A  S  I  A  G  V  S  I  T  I  P  T  I  S  S  D  S  P  K  I  Q  P  L  K  L  Q  T  L  N  S  P  W  K  K  S  S  Q  L  G  Y  R  R  M  M  Y  V  V  V  P  R  V  V  P  D  K  K  L  S  D  L  V  A  E  S  V  K  E  A  E  E  T  C  A  E  D  P  V  S  G  E  C  K  A  A  W  D  V  V  E  E  T  S  A  A  A  S  H  A  R  D  K  K  K  E  S  D  V  L  E  N  Y  C  K  D  N  P  E  T  D  E  C  R  T  Y  D  N  *  L  *  *  *  L  V  A  A  T  H  V  M  S  C  V  L  F  K  W  *  S  V  L  S  K  L  K  S  S  L  M  L  C  M  V  W  C  L  I  I  H  T  V  T  M  N  S  N  L  C  D  I  V  *  T  N  E  L  K  M  I  K  L  D  Q  S  R  N  I  T  R  E  L  *  F  K  Q  L  F  S  A  S  N  A  T  F  N  F  Q  F  T  *  I  N  K  A  S  F  T  T  T  K   </first_frame>
            <second_frame>  R  K  *  K  N  I  F  F  F  F  T  L  T  Q  S  K  *  K  W  R  P  *  P  V  L  V  *  Q  S  Q  Q  F  H  P  I  H  P  K  F  S  P  *  N  C  K  P  *  T  A  H  G  R  N  Q  V  N  W  V  T  G  G  *  C  M  *  W  Y  P  E  *  F  R  I  R  S  Y  L  I  *  L  R  K  V  L  K  K  L  K  K  L  V  R  R  I  R  *  A  A  S  V  R  R  H  G  M  W  W  K  R  R  V  Q  Q  R  A  M  R  G  I  R  R  R  N  Q  M  Y  W  R  I  I  A  R  I  I  Q  K  L  M  N  A  A  L  T  I  I  N  Y  D  D  D  *  *  Q  L  L  M  S  C  L  V  F  F  S  N  G  N  L  F  Y  Q  N  L  N  L  L  L  C  Y  V  W  Y  G  V  *  L  Y  I  L  L  P  *  I  P  I  Y  V  I  *  F  E  R  T  N  *  K  *  *  S  *  I  R  A  E  I  *  P  E  S  F  S  L  N  N  C  S  L  L  V  M  L  L  S  I  F  S  L  H  E  *  I  K  H  L  L  Q  Q  Q  K  </second_frame>
            <third_frame>   E  N  K  K  I  S  S  S  S  S  P  *  H  R  A  N  K  N  G  V  H  S  R  C  *  Y  N  N  P  N  N  F  I  R  F  T  Q  N  S  A  L  E  I  A  N  P  K  Q  P  M  E  E  I  K  S  I  G  L  Q  E  D  D  V  C  S  G  T  Q  S  S  S  G  *  E  A  I  *  F  S  C  G  K  C  *  R  S  *  R  N  L  C  G  G  S  G  E  R  R  V  *  G  G  M  G  C  G  G  R  D  E  C  S  S  E  P  C  E  G  *  E  E  G  I  R  C  T  G  E  L  L  Q  G  *  S  R  N  *  *  M  P  H  L  R  *  L  I  M  M  M  I  S  S  S  Y  S  C  H  V  L  C  S  F  Q  M  V  I  C  F  I  K  T  *  I  F  S  Y  V  M  Y  G  M  V  F  N  Y  T  Y  C  Y  H  E  F  Q  F  M  *  Y  S  L  N  E  R  I  E  N  D  K  V  R  S  E  Q  K  Y  N  Q  R  A  L  V  *  T  I  V  L  C  *  *  C  Y  F  Q  F  S  V  Y  M  N  K  *  S  I  F  Y  N  N  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0288L16.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87882" stop="88319"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKIKKYLLLLHPNTEQIKMASIAGVSITIPTISSDSPKIQPLKLQTLNSPWKKSSQLGYRRMMYVVVPRVVPDKKLSDLVAESVKEAEETCAEDPVSGECKAAWDVVEETSAAASHARDKKKESDVLENYCKDNPETDECRTYDN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="88443" PGL_stop="87893"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88443" e_stop="87893"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="88443" e_stop="87893" e_length="551"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88443" stop="87893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746566" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATGTATAATTAAACACCATACCATACATAACATAAGAGAAGATTTAAGTTTTGATAAAACAGATTACCATTTGAAAAGAACACAAGACATGACATGAGTAGCTGCTACTAATCATCATCATAATTAATTATCGTAAGTGCGGCATTCATCAGTTTCTGGATTATCCTTGCAATAATTCTCCAGTACATCTGATTCCTTCTTCTTATCCCTCGCATGGCTCGCTGCTGCACTCGTCTCTTCCACCACATCCCATGCCGCCTTACACTCGCCGCTCACCGGATCCTCCGCACAAGTTTCTTCAGCTTCTTTAACACTTTCCGCAACTAAATCAGATAGCTTCTTATCCGGAACTACTCTGGGTACCACTACATACATCATCCTCCTGTAACCCAATTGACTTGATTTCTTCCATGGGCTGTTTAGGGTTTGCAATTTCAAGGGCTGAATTTTGGGTGAATCGGATGAAATTGTTGGGATTGTTATACTAACACCGGCTATGGACGCCATTTTTATTTGCTCTGTGTTAGGGTGAAGAAGAAGAAGATATTTT</gDNA_template>
            <first_frame> Y  V  *  L  N  T  I  P  Y  I  T  *  E  K  I  *  V  L  I  K  Q  I  T  I  *  K  E  H  K  T  *  H  E  *  L  L  L  I  I  I  I  I  N  Y  R  K  C  G  I  H  Q  F  L  D  Y  P  C  N  N  S  P  V  H  L  I  P  S  S  Y  P  S  H  G  S  L  L  H  S  S  L  P  P  H  P  M  P  P  Y  T  R  R  S  P  D  P  P  H  K  F  L  Q  L  L  *  H  F  P  Q  L  N  Q  I  A  S  Y  P  E  L  L  W  V  P  L  H  T  S  S  S  C  N  P  I  D  L  I  S  S  M  G  C  L  G  F  A  I  S  R  A  E  F  W  V  N  R  M  K  L  L  G  L  L  Y  *  H  R  L  W  T  P  F  L  F  A  L  C  *  G  E  E  E  E  D  I   </first_frame>
            <second_frame>  M  Y  N  *  T  P  Y  H  T  *  H  K  R  R  F  K  F  *  *  N  R  L  P  F  E  K  N  T  R  H  D  M  S  S  C  Y  *  S  S  S  *  L  I  I  V  S  A  A  F  I  S  F  W  I  I  L  A  I  I  L  Q  Y  I  *  F  L  L  L  I  P  R  M  A  R  C  C  T  R  L  F  H  H  I  P  C  R  L  T  L  A  A  H  R  I  L  R  T  S  F  F  S  F  F  N  T  F  R  N  *  I  R  *  L  L  I  R  N  Y  S  G  Y  H  Y  I  H  H  P  P  V  T  Q  L  T  *  F  L  P  W  A  V  *  G  L  Q  F  Q  G  L  N  F  G  *  I  G  *  N  C  W  D  C  Y  T  N  T  G  Y  G  R  H  F  Y  L  L  C  V  R  V  K  K  K  K  I  F  </second_frame>
            <third_frame>   C  I  I  K  H  H  T  I  H  N  I  R  E  D  L  S  F  D  K  T  D  Y  H  L  K  R  T  Q  D  M  T  *  V  A  A  T  N  H  H  H  N  *  L  S  *  V  R  H  S  S  V  S  G  L  S  L  Q  *  F  S  S  T  S  D  S  F  F  L  S  L  A  W  L  A  A  A  L  V  S  S  T  T  S  H  A  A  L  H  S  P  L  T  G  S  S  A  Q  V  S  S  A  S  L  T  L  S  A  T  K  S  D  S  F  L  S  G  T  T  L  G  T  T  T  Y  I  I  L  L  *  P  N  *  L  D  F  F  H  G  L  F  R  V  C  N  F  K  G  *  I  L  G  E  S  D  E  I  V  G  I  V  I  L  T  P  A  M  D  A  I  F  I  C  S  V  L  G  *  R  R  R  R  Y  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0288L16.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88267" stop="88055"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSSTSDSFFLSLAWLAAALVSSTTSHAALHSPLTGSSAQVSSASLTLSATKSDSFLSGTTLGTTTYIILL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0288L16.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88341" stop="88132"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLIIIIINYRKCGIHQFLDYPCNNSPVHLIPSSYPSHGSLLHSSLPPHPMPPYTRRSPDPPHKFLQLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="89939" PGL_stop="88885"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89939" e_stop="88885"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89939" e_stop="88885" e_length="1055"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89939" stop="89132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89939" stop="89148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89939" stop="89157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89939" stop="89244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89939" stop="89258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89939" stop="89330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89939" stop="89568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89913" stop="89116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89579" stop="89015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89579" stop="89015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89328" stop="88885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89328" stop="88897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89328" stop="88897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89328" stop="88897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89328" stop="88897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89328" stop="88897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89328" stop="88897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89327" stop="88897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCATTTTTGTGAATACTTTCATTTGCTGTTTGGATTTTGGATATTCTACTCAGGAAATTATTTGGTTTCTTTGAAGACTGGTTGGGGTCTCTTACAAAGTTCCAATGTTTGATTCTTAGTTTCAAAATTTCTTCATGTCATTCTCTATTCGCGTGCGACGAGTTCGGATTCTGCATTCTTTCTCAGTAGTCTTTCTTTACTGGTTCTACGTGTTTTCATGAACTAGAGCCCTCATCATTTTCTTGTTCCAGTTTAATTTACAAATTCCATAGCCACACTATCAAAAGTTTGGTGCTTTAACAAATTATACATAGTTCCCTGTTATTCCATTTTTTAAATCATTCATCCAATCTGCCTGAGAGACATGTCTTCGACTCCGCACTTGGTGAGTTCTGGTTCAGATGCAGACCAGAGGTATGCAAAGTTCGACGAAAGGAAAAGGAAGAGAATGGAATCCAACCGTGAGTCGGCCAAGAGGTCACGGATGAAGAAGCAGCAGCGTTTGGAGGAGTTAAGTAGCGAAACAACACAGCTGCAGAACCAGAACAGTATCTGCCGTGATAAGATTGCTTCTGTTGAAATGAACTATCGTTCCATTGATGCAGAGAACAACGTGTTGAGGGCTCAGCTTGCAGAATTGACTGAACGGTTGAATTCACTGAACTCACTCACCCAATTTTGGGCTGATACTACTGGATTTCCTGTGGACATTCCTGAAATTCCCGACACTTTGCTGGAGCCATGGCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCTGGTGTGATGATTTACAAGAATGGAATAGAGATTAAGCGTATTAAGTATCTAGTTTGATATTAGCAATGTAGCTTTTGTTTCTGAATAGTAATGGTTGGTTTTGGCCTATTATCGATATCTGAATATCTAGTTTGTTGTTTTTAGTATTTGTTCGACTTTATTTAGTCTGTGGATGTTATATATGCATCTTTTGGAGTACTATGAATGAGATGGCCCTTCTCATTTCTATGAAAAAATTGCTGTGTGT</gDNA_template>
            <first_frame> I  I  F  V  N  T  F  I  C  C  L  D  F  G  Y  S  T  Q  E  I  I  W  F  L  *  R  L  V  G  V  S  Y  K  V  P  M  F  D  S  *  F  Q  N  F  F  M  S  F  S  I  R  V  R  R  V  R  I  L  H  S  F  S  V  V  F  L  Y  W  F  Y  V  F  S  *  T  R  A  L  I  I  F  L  F  Q  F  N  L  Q  I  P  *  P  H  Y  Q  K  F  G  A  L  T  N  Y  T  *  F  P  V  I  P  F  F  K  S  F  I  Q  S  A  *  E  T  C  L  R  L  R  T  W  *  V  L  V  Q  M  Q  T  R  G  M  Q  S  S  T  K  G  K  G  R  E  W  N  P  T  V  S  R  P  R  G  H  G  *  R  S  S  S  V  W  R  S  *  V  A  K  Q  H  S  C  R  T  R  T  V  S  A  V  I  R  L  L  L  L  K  *  T  I  V  P  L  M  Q  R  T  T  C  *  G  L  S  L  Q  N  *  L  N  G  *  I  H  *  T  H  S  P  N  F  G  L  I  L  L  D  F  L  W  T  F  L  K  F  P  T  L  C  W  S  H  G  N  C  L  A  R  F  N  L  S  L  L  L  I  C  S  S  F  E  L  C  W  C  D  D  L  Q  E  W  N  R  D  *  A  Y  *  V  S  S  L  I  L  A  M  *  L  L  F  L  N  S  N  G  W  F  W  P  I  I  D  I  *  I  S  S  L  L  F  L  V  F  V  R  L  Y  L  V  C  G  C  Y  I  C  I  F  W  S  T  M  N  E  M  A  L  L  I  S  M  K  K  L  L  C   </first_frame>
            <second_frame>  S  F  L  *  I  L  S  F  A  V  W  I  L  D  I  L  L  R  K  L  F  G  F  F  E  D  W  L  G  S  L  T  K  F  Q  C  L  I  L  S  F  K  I  S  S  C  H  S  L  F  A  C  D  E  F  G  F  C  I  L  S  Q  *  S  F  F  T  G  S  T  C  F  H  E  L  E  P  S  S  F  S  C  S  S  L  I  Y  K  F  H  S  H  T  I  K  S  L  V  L  *  Q  I  I  H  S  S  L  L  F  H  F  L  N  H  S  S  N  L  P  E  R  H  V  F  D  S  A  L  G  E  F  W  F  R  C  R  P  E  V  C  K  V  R  R  K  E  K  E  E  N  G  I  Q  P  *  V  G  Q  E  V  T  D  E  E  A  A  A  F  G  G  V  K  *  R  N  N  T  A  A  E  P  E  Q  Y  L  P  *  *  D  C  F  C  *  N  E  L  S  F  H  *  C  R  E  Q  R  V  E  G  S  A  C  R  I  D  *  T  V  E  F  T  E  L  T  H  P  I  L  G  *  Y  Y  W  I  S  C  G  H  S  *  N  S  R  H  F  A  G  A  M  A  T  A  L  P  D  S  T  Y  H  C  F  *  Y  V  P  V  L  S  S  A  G  V  M  I  Y  K  N  G  I  E  I  K  R  I  K  Y  L  V  *  Y  *  Q  C  S  F  C  F  *  I  V  M  V  G  F  G  L  L  S  I  S  E  Y  L  V  C  C  F  *  Y  L  F  D  F  I  *  S  V  D  V  I  Y  A  S  F  G  V  L  *  M  R  W  P  F  S  F  L  *  K  N  C  C  V  </second_frame>
            <third_frame>   H  F  C  E  Y  F  H  L  L  F  G  F  W  I  F  Y  S  G  N  Y  L  V  S  L  K  T  G  W  G  L  L  Q  S  S  N  V  *  F  L  V  S  K  F  L  H  V  I  L  Y  S  R  A  T  S  S  D  S  A  F  F  L  S  S  L  S  L  L  V  L  R  V  F  M  N  *  S  P  H  H  F  L  V  P  V  *  F  T  N  S  I  A  T  L  S  K  V  W  C  F  N  K  L  Y  I  V  P  C  Y  S  I  F  *  I  I  H  P  I  C  L  R  D  M  S  S  T  P  H  L  V  S  S  G  S  D  A  D  Q  R  Y  A  K  F  D  E  R  K  R  K  R  M  E  S  N  R  E  S  A  K  R  S  R  M  K  K  Q  Q  R  L  E  E  L  S  S  E  T  T  Q  L  Q  N  Q  N  S  I  C  R  D  K  I  A  S  V  E  M  N  Y  R  S  I  D  A  E  N  N  V  L  R  A  Q  L  A  E  L  T  E  R  L  N  S  L  N  S  L  T  Q  F  W  A  D  T  T  G  F  P  V  D  I  P  E  I  P  D  T  L  L  E  P  W  Q  L  P  C  P  I  Q  P  I  T  A  S  D  M  F  Q  F  *  A  L  L  V  *  *  F  T  R  M  E  *  R  L  S  V  L  S  I  *  F  D  I  S  N  V  A  F  V  S  E  *  *  W  L  V  L  A  Y  Y  R  Y  L  N  I  *  F  V  V  F  S  I  C  S  T  L  F  S  L  W  M  L  Y  M  H  L  L  E  Y  Y  E  *  D  G  P  S  H  F  Y  E  K  I  A  V  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0288L16.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89601" stop="89140"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIHPICLRDMSSTPHLVSSGSDADQRYAKFDERKRKRMESNRESAKRSRMKKQQRLEELSSETTQLQNQNSICRDKIASVEMNYRSIDAENNVLRAQLAELTERLNSLNSLTQFWADTTGFPVDIPEIPDTLLEPWQLPCPIQPITASDMFQF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="93123" PGL_stop="92226"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93123" e_stop="92226"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="93123" e_stop="92226" e_length="898"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93123" stop="92517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93123" stop="92546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93123" stop="92609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93091" stop="92440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92987" stop="92287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92947" stop="92248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92946" stop="92318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92832" stop="92226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92832" stop="92645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92720" stop="92280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258047" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACATGTTCCTTGCTGAAAATGGTTATAAAAGGAAGTCAATTTTCGATTATTTTTTTCAAACACTGAAAATTTTTCCTTCTCTACATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATTGACTGAGTCTGTATGACTTGTTGCTGTTCTTAAGTTCATTGAAGTTAAAGAAGTTTGAGGTACCGGTATTTCTTTAACAAGTTTAATCTGTTTTATCTTGGGAGAAATTAATCCATAACCATGGGTACAGTGAGGGGATTAAATTTCTTAAGGATACACAAGTTTTTGTGGACTCGGATTAATTCTTGTATTTTATATTATTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGTTATTGTAAGAATAACAATCTTAAGAAATTTATCAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTATGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAAATTTATCGTCAAATCAGAAACATTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTCAAATACTTAACTTATCTGCCATTTGTGACAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAATAAGTGCTGCAACAACATCGGTTGCACATAATCGTTCTAATGCTGCCTTAGTGCCTACTGAGAAACCTGCATAGTTTTCTGGAATCGAGTTTAAGAGATGGAAGCAAAAGATGTTCTTCTATCTCACCACATTGAGTCTGCAGAAATTCGTTAATGAGACTGTTCCTGTTATGTCAGATGAAACTCCGGGTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAAATTTTTTGTGTTAAAATTATATTTTGAGT</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  R  L  F  F  S  N  T  E  N  F  S  F  S  T  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  M  T  C  C  C  S  *  V  H  *  S  *  R  S  L  R  Y  R  Y  F  F  N  K  F  N  L  F  Y  L  G  R  N  *  S  I  T  M  G  T  V  R  G  L  N  F  L  R  I  H  K  F  L  W  T  R  I  N  S  C  I  L  Y  Y  F  C  F  I  L  F  L  F  L  F  I  N  L  I  N  T  G  Y  C  K  N  N  N  L  K  K  F  I  S  F  C  I  *  G  F  W  R  L  K  P  L  W  F  S  T  M  L  E  F  L  K  F  I  R  L  T  I  K  R  T  *  K  I  Y  R  Q  I  R  N  I  L  C  K  D  L  F  F  T  V  S  I  S  N  T  *  L  I  C  H  L  *  Q  K  N  D  *  F  K  S  N  K  C  W  N  N  K  C  C  N  N  I  G  C  T  *  S  F  *  C  C  L  S  A  Y  *  E  T  C  I  V  F  W  N  R  V  *  E  M  E  A  K  D  V  L  L  S  H  H  I  E  S  A  E  I  R  *  *  D  C  S  C  Y  V  R  *  N  S  G  *  *  T  I  L  G  N  R  S  M  D  T  L  K  F  F  V  L  K  L  Y  F  E  </first_frame>
            <second_frame>  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  Y  F  F  Q  T  L  K  I  F  P  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  L  T  E  S  V  *  L  V  A  V  L  K  F  I  E  V  K  E  V  *  G  T  G  I  S  L  T  S  L  I  C  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  D  *  I  S  *  G  Y  T  S  F  C  G  L  G  L  I  L  V  F  Y  I  I  S  A  S  S  Y  F  C  F  C  L  L  T  L  *  I  Q  V  I  V  R  I  T  I  L  R  N  L  S  V  S  V  F  E  V  S  G  D  *  N  L  Y  G  F  L  L  C  L  N  F  *  N  S  F  D  *  R  L  K  E  H  K  K  F  I  V  K  S  E  T  F  C  V  K  I  C  S  L  L  L  V  F  Q  I  L  N  L  S  A  I  C  D  K  K  M  T  N  S  S  Q  T  N  A  G  T  I  S  A  A  T  T  S  V  A  H  N  R  S  N  A  A  L  V  P  T  E  K  P  A  *  F  S  G  I  E  F  K  R  W  K  Q  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  V  N  E  T  V  P  V  M  S  D  E  T  P  G  D  E  R  F  L  V  T  E  A  W  T  H  S  N  F  L  C  *  N  Y  I  L  S </second_frame>
            <third_frame>   T  C  S  L  L  K  M  V  I  K  G  S  Q  F  S  I  I  F  F  K  H  *  K  F  F  L  L  Y  I  Y  F  S  L  K  *  N  Q  S  V  D  *  L  S  L  Y  D  L  L  L  F  L  S  S  L  K  L  K  K  F  E  V  P  V  F  L  *  Q  V  *  S  V  L  S  W  E  K  L  I  H  N  H  G  Y  S  E  G  I  K  F  L  K  D  T  Q  V  F  V  D  S  D  *  F  L  Y  F  I  L  F  L  L  H  L  I  S  V  S  V  Y  *  P  Y  K  Y  R  L  L  *  E  *  Q  S  *  E  I  Y  Q  F  L  Y  L  R  F  L  E  I  K  T  F  M  V  F  Y  Y  A  *  I  F  K  I  H  S  I  N  D  *  K  N  I  K  N  L  S  S  N  Q  K  H  F  V  *  R  F  V  L  Y  C  *  Y  F  K  Y  L  T  Y  L  P  F  V  T  K  K  *  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  H  R  L  H  I  I  V  L  M  L  P  *  C  L  L  R  N  L  H  S  F  L  E  S  S  L  R  D  G  S  K  R  C  S  S  I  S  P  H  *  V  C  R  N  S  L  M  R  L  F  L  L  C  Q  M  K  L  R  V  M  N  D  S  W  *  Q  K  H  G  H  T  Q  I  F  C  V  K  I  I  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0288L16.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92633" stop="92412"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLKEHKKFIVKSETFCVKICSLLLVFQILNLSAICDKKMTNSSQTNAGTISAATTSVAHNRSNAALVPTEKPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 191 chains have been computed
$ 
$ memory statistics:
$ 390080 bytes spliced alignments in total
$ 122 spliced alignments have been stored
$ 3197 bytes was the average size of a spliced alignment
$ 21488 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1652 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 215 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 17:37:30
-->
