<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:59:24"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M9149" ref_strand="+" ref_description="SGN-M9149 C2_At5g61510 [cosii_markers]">
      <seq>aagagagaagcatcatttaggtagcattcaattgggttaaagctagacttaatttctttatgacaggtatggaggccgtagggattgtaacagctgttggttccggattaactgggaggaaagttggtgatattgttgcatatgctggcaatccgatgggttcatatgctgaggaacagatccttcctgccgataaagttgtgcctgttcctccctctattgaccccattgttgcagcatccatacttctcaagggcatgactgctcagttcctactgcgacgctgcttcaaagttgaacgtgggcacacagtacttgttcatgctgcagcaggtggagttggctctctattgtgccaatgggcaaatacccttggtgctacagtcattgggactgtatcaactaaagagaaggcaatccaagcgaaagatgacgggtgtcatcatgtcataatctataaggaagaggattttgtcactcgtgtcaatgagatcacatctggccaaggagttgaagttgtctatgattctgttgggaaagatacatttcagggatcattagactgcttaaaaacttgtggattcatggtgagtttcgggcaatcatctggttcgccagatccagtacctttatcagctcttgcagtgaaatcgctctttctgacaggcctaccatgatgcattacaccattacgagggacgaactactggaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8630" stop="11856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8927" g_stop="9220" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9221" i_stop="10748" i_length="1528">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10749" g_stop="11006" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="551" r_length="258" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11007" i_stop="11389" i_length="383">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.926" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11390" g_stop="11556" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="716" r_length="165" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-M9149" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M9149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8927" e_stop="9220"/>
          <exon e_start="10749" e_stop="11006"/>
          <exon e_start="11390" e_stop="11556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATAGAAGTATTATTTAGGTAGCATTCAGTTGGAATTGAAGCTAGAATTAAATTCTTTATGCCAGGTATGGAGGCTGTAGGGGTTGTAACAGCTGTTGGTCCCGGATTGACTGGGAGGAAAGTTGGTGATATTGTTGCATATGCTGGTGGTGTGATGGGTGCATATGCTGAGGAACAGATCCTTCCTGCTGATAAAGTTGTGCCTGTTCCTCCCTCAATTGACCCCATTGTTGTAGCATCCATACTTCTCAAGGGCATGACTGCTCAGTTCCTACTGCGCCGCTGCTTCAAAGTATGTACATCATAATCTTACAGCAGCCGAGTTTCCTCTATTCTTTTTTTCCATCTGTTCCTTCTTTAGTTAAAGTAGACATGCTTATATTATAAACTAGATGATTTAGATTATCTAGTGCGGAAGAAGTCCTCAACTCTTACAAATTTACCAGTTTTAAAAAAGAAGTCCTCAACTCTGACATGGGCATGATTGAGTGTTTGTTTTATGATTTAGATGTTTTTCCCTACATGTTAATCAATGTGATCATATATAGGACAATTTAAGGGAAGATACAAAATATTTGATTGTCTCTTATTACTGGAAATTCAATCTTTAGATATTGACTGGAGTACTAATGGATGATTAGCAATTAGACGCATATCCCATGATTGAAGTTCCTTTATCCATACTCTCCTTTTTTAAGTAAATTAATCTATTTCTTGGTGATTCACAGCAGGTTGCTAGGTCCTATTGCTTTTGACTACTGCATCATGTGTTTCTCTTAGTTATTGCATGAGTAATTACAACTTGAAGAAGTAAACGTCATAGTCCCCAGTGATATGTCTTGAGAAAAACCAATACCGTTGCTTGTGATATTTGGTGTGTAATTTAGAAGTTGAGGGCTAGTAATCTGGATGCGCATATGGATCTTTTCCTCTTCTTCATTTTGAAGATTTCCAGCTTTTAAATTTCATATGATTGTTCTCTTGATAATGGAAGACTATGTGTCCTATCAGTGTTACAAAGCCATAAGCACCATCATTACTTCATTTTTGTCTCCAGGTATCGGGCAGATCTGTGTTCTGGATGGCTGTGCTCTTAAAATCTTGATATTCTCTGTACCAAAGCAACTTTGGGAAACTGTGAAATGGAAGATATTCTTTAATTTCCTGCTGGTTTAGTTGGTTGTTTGCAGCTAGTTAGTGAAGCAGATAAAACATCAGAAAATATAAAATATGACTAAATTGAATGCTTGAAAGCGCGAAGATTATGGAATACATTTTATTATGAGTGCATTGTCTTCCAGTTTCTACAAGGTTAAGCAGTTAACATAAAGTATCTCCGCTCTCTCCTGATCAGAATCAGGTTCCCCATAAATTGGATTCTTAGAGATTTACAGAATTACTTGGGAATCCCAAACCATGGGAAGGGGGACCAAAGGCTTCTAAACTAAATCTGGAGGTTAATGCAGTCCAGTTTGTAGAATAGTGTGCTATAATAAATACAACATGCTGAACATGAACCCGCTCTGCTTCCCAGATTGGTAATTTTAAGAGGGCTGAAAGGAAAAGAAATGACCTTTCTAGCCTCATTGTTTCTCAAAAAAAGAAGTGACCTTTCAATGGTTTTGGCATGTAATGTTTGTGCAACAAATTGCAATTTGCTGTCTTCTTGGAATTTCATCCATCCATTTCCTTTTCATTCAAACTTAATTCTTTTAAAATTCTTTTAATTGAATAGATTTTCCTCTCATTTGCATAAATTCAAACTAAGATATAGCTTCTTTACTTTCGTCAAATTTATACTGTCTTGCAATGTGTTACAGGTTGAACGTGGGCACGCAGTACTTGTTCATGCTGCAGCAGGTGGGGTTGGCTCCCTATTGTGCCAATGGGCAAATGCCCTTGGTGCTACAGTCATTGGGACTGTATCAACTAAAGAGAAAGCAGCCCAAGCTAAAGATGATGGGTGTCATCATGTCATAATCTATAAGGAAGAGGATTTCGTCACTCGTGTCAATGAGATCACATCTGGCCAAGGAGTTGAAGTTGTGTATGATTCTGTTGGAAAAGATACTTTTCAGGTATTGGTATTTACATTCATTCATTCTTTATCGACCAAGTTAGCCTAAATTCACAGAAAAGCTTTCAGAAAAGCAACACTTTCATCAGAATGGTGAAGTTTGTTCATGTAGGTTGGGGTTTAGTTTAACAAAATCCCTTTTAACTGTTGGAGATTGAAATTATTTTAAAACAATCATAACTTGCCAAATCATTAATGATTAACGGCGAACTAGCAATAAACCAACTATCCAGGGGAAATTTAATGCAACATCTTTAGCCTGTAGGAAAATGAACAAGAAAACTATGATGGGACAATACTTGGGTGACCAGGATTAAAAAGAATTTATTGTGCTTATTAAGTCCTGTTCCTATGTAGCCTTTGATTAGAAATTTTTTTGATCAGGGATCATTAGACTGCTTAAAAACTCGTGGATACATGGTGAGTTTTGGGCAGTCATCTGGCTCACCAGATCCAGTACCTTTATCAGCTCTTGCAGTGAAATCGCTATTTCTGACAAGGCCTAGCATGATGCACTACACAATGACGAGGGATGAACTACTAGAAACTGC</genome_strand>
        <mrna_strand>AAGAGAGAAGCATCATTTAGGTAGCATTCAATTGG-GTTAAAGCTAGACTTAATTTCTTTATGACAGGTATGGAGGCCGTAGGGATTGTAACAGCTGTTGGTTCCGGATTAACTGGGAGGAAAGTTGGTGATATTGTTGCATATGCTGGCAATCCGATGGGTTCATATGCTGAGGAACAGATCCTTCCTGCCGATAAAGTTGTGCCTGTTCCTCCCTCTATTGACCCCATTGTTGCAGCATCCATACTTCTCAAGGGCATGACTGCTCAGTTCCTACTGCGACGCTGCTTCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAACGTGGGCACACAGTACTTGTTCATGCTGCAGCAGGTGGAGTTGGCTCTCTATTGTGCCAATGGGCAAATACCCTTGGTGCTACAGTCATTGGGACTGTATCAACTAAAGAGAAGGCAATCCAAGCGAAAGATGACGGGTGTCATCATGTCATAATCTATAAGGAAGAGGATTTTGTCACTCGTGTCAATGAGATCACATCTGGCCAAGGAGTTGAAGTTGTCTATGATTCTGTTGGGAAAGATACATTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................GGATCATTAGACTGCTTAAAAACTTGTGGATTCATGGTGAGTTTCGGGCAATCATCTGGTTCGCCAGATCCAGTACCTTTATCAGCTCTTGCAGTGAAATCGCTCTTTCTGAC-AGGCCTACCATGATGCATTACACCATTACGAGGGACGAACTACT-GGAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M3091" ref_strand="+" ref_description="SGN-M3091 cLET-5-A4 [est_clones]">
      <seq>ctggccaaggagttgaagttgtgtatgattctgttggaaaagatacttttcagggatcattagactgcttaaaaactcgtggatacatggtgagttttgggcagtcatctggctcaccagatccaatacctttatcagctcttgcagtgaaatcgctatttctgacaaggcctagcatgatgcactacacaatgacgagggatgaactactagaaactgccggagaggtatttgctaatgtggcatcaggtgtcttacgcgtccgtgtgaatcatacttatcccctgtctcaggcggcacaagcacataccgaccttgagagcaggaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10654" stop="11967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10954" g_stop="11006" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11007" i_stop="11389" i_length="383">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11390" g_stop="11667" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="331" r_length="278" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-M3091" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M3091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10954" e_stop="11006"/>
          <exon e_start="11390" e_stop="11667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCCAAGGAGTTGAAGTTGTGTATGATTCTGTTGGAAAAGATACTTTTCAGGTATTGGTATTTACATTCATTCATTCTTTATCGACCAAGTTAGCCTAAATTCACAGAAAAGCTTTCAGAAAAGCAACACTTTCATCAGAATGGTGAAGTTTGTTCATGTAGGTTGGGGTTTAGTTTAACAAAATCCCTTTTAACTGTTGGAGATTGAAATTATTTTAAAACAATCATAACTTGCCAAATCATTAATGATTAACGGCGAACTAGCAATAAACCAACTATCCAGGGGAAATTTAATGCAACATCTTTAGCCTGTAGGAAAATGAACAAGAAAACTATGATGGGACAATACTTGGGTGACCAGGATTAAAAAGAATTTATTGTGCTTATTAAGTCCTGTTCCTATGTAGCCTTTGATTAGAAATTTTTTTGATCAGGGATCATTAGACTGCTTAAAAACTCGTGGATACATGGTGAGTTTTGGGCAGTCATCTGGCTCACCAGATCCAGTACCTTTATCAGCTCTTGCAGTGAAATCGCTATTTCTGACAAGGCCTAGCATGATGCACTACACAATGACGAGGGATGAACTACTAGAAACTGCCGGAGAGGTATTTGCTAATGTGGCATCAGGTGTCTTACGCGTCCGTGTGAATCATACTTATCCCCTGTCTCAGGCGGCACAAGCACATACCGACCTTGAGAGCAGGAAAAC</genome_strand>
        <mrna_strand>CTGGCCAAGGAGTTGAAGTTGTGTATGATTCTGTTGGAAAAGATACTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................GGATCATTAGACTGCTTAAAAACTCGTGGATACATGGTGAGTTTTGGGCAGTCATCTGGCTCACCAGATCCAATACCTTTATCAGCTCTTGCAGTGAAATCGCTATTTCTGACAAGGCCTAGCATGATGCACTACACAATGACGAGGGATGAACTACTAGAAACTGCCGGAGAGGTATTTGCTAATGTGGCATCAGGTGTCTTACGCGTCCGTGTGAATCATACTTATCCCCTGTCTCAGGCGGCACAAGCACATACCGACCTTGAGAGCAGGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1386" ref_strand="+" ref_description="SGN-M1386 T0244 [cos_markers]">
      <seq>gaactcgtacttgaagatgtcagtcaagaccatgcacgcaagacggtgaccattgaagaccatccacatcttccagggaaacatgcttctgtgcatccttgccgacatggggctgtgatgaagaaaattattgatgttttgatgttgagaggagttgaacccgaagttgacaagtatcttttcctgttcttgaagtttgtggcttcggttattccaacaattgaatatgattacaccatggactttgatcttggtagcagtagcacctgatttgctgtcaacttccttcgattgatgctggcatataacatgtcaaccagtcaaatactctaatggcaatacctatttataaattgtacagtatttataaatgttcttctagaaatgtggagcatgcatgatgaatcgtcagcatgccttgtttattttgtatattaacaaagaataaaggttattcaagtttgcactttgcacgatccactgcaaggctgaaattgtttatttaagttaaagttagcaggatgaaagctacatgaatagtaagtgatgatgtttgttttatgcatcaaatgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="104964" stop="109908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105264" g_stop="105308" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105309" i_stop="106403" i_length="1095">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106404" g_stop="106531" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="173" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106532" i_stop="109130" i_length="2599">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109131" g_stop="109247" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="290" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109248" i_stop="109322" i_length="75">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109323" g_stop="109608" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="576" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-M1386" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105264" e_stop="105308"/>
          <exon e_start="106404" e_stop="106531"/>
          <exon e_start="109131" e_stop="109247"/>
          <exon e_start="109323" e_stop="109608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCGTACTTGAAGATGTCAGTCAAGACCATGCACGCAAGACGGTGAGATACATCTTTTAAGTCTTAATGTATTTGGGGACAAACTTAAATGGGTTTCTCCTTACTGTTGTTTGTTTGTAAATGAAATTGCAGTAGTTGGTCCAAGCAATGTAGAACATTGCTCCTTGTCTAATTTCTTGAGAAGTTCTAACCCAGATGGTATTGTTGTTTGCTTTGCAATCTCAGGGCTGTGTATTATTCAGTTACAAGGAAGAAACTCACTTAGTGAATCAGTTTCAGCTTACCTGTTTTTAGTTATTGCACACATCCATGCCAACCTTTAAATAAGAAATTGCATATGATGGTGTGGTGAGGGTTTTTGAAGTTATCCATTAACTGTGTGAAAAATATAATATCCTGCAAAACCTATATCAAACATGGTCTGGTAGTTTGGTCATAAGTGGTTGGATTCTTTCTTGCTAATTGGCATCTGGAAATCAAGTCCAAGTGCATGCATTCAACTTATCAACTTTTCCCCATGTTATTCTCTTTATCATTGTTGTTCTTTTATTTAAATTTTGTTGTTCTTTTATTTAAATTTAAATTTTGAAGTGAAAACTAAATGTGGCATAGTTTGTCAAAAGTTTGTTGCTTATACCTTTACTTCCTTCCCCACTACAACCACTTGCCTCCTCTGAACTCAGAGCCTTGCCGCCTAATTGGATAGCAATCAAACATTCCTAAAGACACTCTCTATCCCTTTCTTCCCCATCTCTTCTCTCCTACAAGCTTCCAATTGAACCATATTCTAAGAAATTCAACTAATGAGGCAATGATTTGTTTCACATTTGACCACTATAACTCTTTTCAAGGCCCTCTTGTTCCTTATACACAATAGAGCTTGAATGCTTGCTTTGATGCGATATCTATTCAGTACAAATCCAAACCCACCAAGGACTATTTCGGTTGACGAGCACTATCCATTTTAGCTGACTAAAACTTTTGTTCATGAACCAAATTGTAGATCTAAGCAACTGAATGAACTGTCACTTTGTTATCAACTTCCTTTCCTTTATAGCCCTTTCTCTTATTTAACTACTACAACTATTTTGTCGATGAATTCATTTTAATCTTTCCTTCTCAACATTGTTAACTCAGGTGACCATTGAAGACCATCCACATCTTCCAGGGAAACATGCTTCTGTGCATCCTTGCCGACATGGGGCTGTGATGAAGAAAATTATTGATGTTTTGATGTTGAGAGGAGTTGAACCCGAAGTTGACAAGTACACTCTAATTTCTTTTCTAGTATCCTTGTGTTTTCCATTAAGCACTATGCATAGTTGCACTTACATAAGACACATACGATCTGTTTACATGGGGATACTTGGGGAACATTTATTTCTGTTCGCATGTTTCATTCAAAGAGCTATACTATGCAGGGACGAACCAGAGGGAGGTTCTGTTCATTGTGGCATTTGTTTTTCAGGAAAGTTGATGCTTTGGCATTCAATTTTTAGGGATTCACTGGTGTCTCCCGTAATTGGTCTTCGCATTTAAAAACAATGAGAAGGTTTCCTGCTGCTGCAGCAGCATATTTTAGCTGTGGTAGACATGGAAGCAGTATCAGTAATAATGACTGAGACATTGTTTCAATCCTACCCTCCTCCATCTAGCTTTTATCAATGACCTCAAGTTATTAATTTGACAAATGGAGGAGTATACTTTTGGCTTCAATGGAATATTTTGGAACAAGAACTAAGTTGCGCGGGCTCTTCACTTTTGATGCCATACCCGTGTCTGATTCTCCAAAAATACTCTACTTTTGGAGAATCAAACACGCCACGTTGACATTTTTGAAGAGTCTGAGCAACATAGACAAGAATCATTATTGATACTTCTATTCAAGTGAATTTAATTCCAATACTTATTTTAAGAGTCAGGATTTCTCCAAATCTAAGTTACCCTTGTGTGGTTAATTGATTAATCTCAACTAGTTTGTATCGCCTACATGGGATACTTTCTTTTTATTGCGTTAAGTTTTTGTTAAGTCTATTGATGCAAAGTGATCTTTTATCTTTCTCATTCCTTTTATGAGCTTAAATCATCATTTTTAACACCTAATAATGGTGCATTGGAAGGTTCGCGTAGGACACGAGCTAACTATCTAACCCGATCTCTCATTTTATCCTCTATGTTTACTACTTGCACCATCTGTCTGATGTAATTATTTCAAATCTTGTCATATTTTGTACGGTCGTACATCCAATTTGATATTCACATTCTACAACAGTCATCTTATGGATCTGTTGGGCCTTGAAGGGCAAGTCTCCCATATTACATTATAGGTCTCACAAAAACTTGCTTTCCATCTTGTTAGGTATCTTTTTATAGTGTAACAAAACTTATGTGAAACTCCTCTATCGTTTTTTGATAATTGAGAGTCTCCTTAAGGTTTAGATGGCCCAGCTACAGTTGGCTGTATAGGTTTGAAACTCAGAGGGGTATGTGCAGCTCCTCTATCATCCTCCCATTTCAATACCGGGCTTTGGTCCTCATGGGTTCAAACTTGTGATGTGTGCACACACTCACAAATATACTGACTTTTACTGTTGAGCCAAATCCCTGGGATGTAAGATATTACACATAATCAAAATTGGATGGTTAAAATGGAGAGTGCCCTGGGTATTCTATAATAGCTAACAATGTGAAAGGTAAGTCTATAGAACAGTTGTAAGACTAGCAATGTTGAGTGAATATTGGACTGTTCAACACATCCTCAAGATGAGTGTTTCAGAGATGCAAATGGCTGGATGGATGTGCGTTATGAGATCAGACAAGATAAGAAATGACTACAATTGGCCTGAAGGTGCACTCACTACACGTGAGGTAAAATGAGGGGTCATTTGAGATGGTTTGGTCATGTGTAAAATGAGGGGTCATTTGAGATGGTTTGGTCATGTCCTAACTCGACCTCTATATGCACCGGTCCTTAGGTGTGAAGTTATGTAAAGTGAAGATGCTTGGGTAGATCTAAAATCACATGGAAGGAGGTTGCCTTGAAAGACTTGCCATCTTTTGAAATCAATGCGGACTTAACGAAAAATAGAGAATAATAGAAGGAAATGATTTCTATAAGCAAATAATACCGATTAGATGAGAATATACTTTAGTCATTTGTATGTAGCACACATTTAGGTCTTACGCTTTCTAGGAATCTCTTAGCGCTGTTAGAGATTATTATGCCAGTGGGAAATATAGAAACTTATGTTACTTTCCATATACTTATAAAAAATTCTTATATTGCTGTTGGTCTGTGATGAATTTAAATGGAAACTATGGTTGGTGAGAATTCATATAGCCAATCCGAACTTGTTTAGGATTAAAGCGTAGTGTTGTTGTATATCATATCATCATGTTATAAACCCAAGCCTATATATCTGATATTACATTTAGGCACCACAGTCCATTTAATCTCACTTTATTTTCATCTATGGGAAGTACACTTGGAGTTATATGCTCAATTTTATTTCTACTTATCCTACGAAGTAGATGCAGTGTTCCTCGACAGTTTCAAGTTCTGGTTGACTTTCCTGCTATAGTCATGTTGTAGCCACTTAAAAGAAAGAAAATAAGAGGGTTTGTACCCAATGATAGTGATTTCGATGATTCTTACTGTAGCCGCTGATTCTTTCATTATCATCAAAGGTAATTCGAGTAAGCTTCCTGGAGTAAAATGTGCTTGTTTTAGACTGAAGATTTGAGACATATGTGACCCAACAACTTAAATGCACGAACTTCCTAAATTTGAATCTCCTTTTAGTTTCTCTACTTGCATCAGGTTTTTGTCTCCTCTTGAATGTTGATCTCAATCACCATTTGCAGGTATCTTTTCCTGTTCTTGAAGTTTGTGGCTTCGGTTATTCCAACAATTGAATATGATTACACCATGGACTTTGATCTTGGTAGCAGTAGCACCTGATTTGCTGTCAACTTCCTTCGGTCAGTAACAGTGGTAAAATTATTTTTTAGCCTAACTAGCAAAGATGATATGGATGTTGTATTTTGTTTTTTCAGATTGATGCTGGCATATAACATGTCAACCAGTCAAATACTCTAATGGCAATACCTATTTATAAATTGTACAGTATTTATAAATGTTCTTCTAGAAATGTGGAGCATGCATGATGAATCGTCAGCATGCCTTGTTTATTTTGTATATTAACAAAGAATAAAGGTTATTCAAGTTTGCACTTTGCACGATCCACTGCAAGGCTGAAATTGTTTATTTAAGTTAAAGTTAGCAGGATGAAAGCTACATGAATAGTAAGTGATGATGTTTGTTTTATGCATCAAATGTCTA</genome_strand>
        <mrna_strand>GAACTCGTACTTGAAGATGTCAGTCAAGACCATGCACGCAAGACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACCATTGAAGACCATCCACATCTTCCAGGGAAACATGCTTCTGTGCATCCTTGCCGACATGGGGCTGTGATGAAGAAAATTATTGATGTTTTGATGTTGAGAGGAGTTGAACCCGAAGTTGACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTTTTCCTGTTCTTGAAGTTTGTGGCTTCGGTTATTCCAACAATTGAATATGATTACACCATGGACTTTGATCTTGGTAGCAGTAGCACCTGATTTGCTGTCAACTTCCTTCG...........................................................................ATTGATGCTGGCATATAACATGTCAACCAGTCAAATACTCTAATGGCAATACCTATTTATAAATTGTACAGTATTTATAAATGTTCTTCTAGAAATGTGGAGCATGCATGATGAATCGTCAGCATGCCTTGTTTATTTTGTATATTAACAAAGAATAAAGGTTATTCAAGTTTGCACTTTGCACGATCCACTGCAAGGCTGAAATTGTTTATTTAAGTTAAAGTTAGCAGGATGAAAGCTACATGAATAGTAAGTGATGATGTTTGTTTTATGCATCAAATGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="8927" PGL_stop="11667"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8927" e_stop="9220"/>
            <exon e_start="10749" e_stop="11006"/>
            <exon e_start="11390" e_stop="11667"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="0.912"/>
          <exon-intron don_prob="0.982" acc_prob="0.926" e_score="0.950"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="8927" e_stop="9220" e_length="294"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9221" i_stop="10748" i_length="1528"/>
          </intron>
          <exon e_serial="2" e_score="0.950">
            <gDNA_exon_boundary e_start="10749" e_stop="11006" e_length="258"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.926">
            <gDNA_intron_boundary i_start="11007" i_stop="11389" i_length="383"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="11390" e_stop="11667" e_length="278"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8927" stop="9220"/>
              <exon start="10749" stop="11006"/>
              <exon start="11390" stop="11556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10954" stop="11006"/>
              <exon start="11390" stop="11667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M3091" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCATAGAAGTATTATTTAGGTAGCATTCAGTTGGAATTGAAGCTAGAATTAAATTCTTTATGCCAGGTATGGAGGCTGTAGGGGTTGTAACAGCTGTTGGTCCCGGATTGACTGGGAGGAAAGTTGGTGATATTGTTGCATATGCTGGTGGTGTGATGGGTGCATATGCTGAGGAACAGATCCTTCCTGCTGATAAAGTTGTGCCTGTTCCTCCCTCAATTGACCCCATTGTTGTAGCATCCATACTTCTCAAGGGCATGACTGCTCAGTTCCTACTGCGCCGCTGCTTCAAA : GTTGAACGTGGGCACGCAGTACTTGTTCATGCTGCAGCAGGTGGGGTTGGCTCCCTATTGTGCCAATGGGCAAATGCCCTTGGTGCTACAGTCATTGGGACTGTATCAACTAAAGAGAAAGCAGCCCAAGCTAAAGATGATGGGTGTCATCATGTCATAATCTATAAGGAAGAGGATTTCGTCACTCGTGTCAATGAGATCACATCTGGCCAAGGAGTTGAAGTTGTGTATGATTCTGTTGGAAAAGATACTTTTCAG : GGATCATTAGACTGCTTAAAAACTCGTGGATACATGGTGAGTTTTGGGCAGTCATCTGGCTCACCAGATCCAGTACCTTTATCAGCTCTTGCAGTGAAATCGCTATTTCTGACAAGGCCTAGCATGATGCACTACACAATGACGAGGGATGAACTACTAGAAACTGCCGGAGAGGTATTTGCTAATGTGGCATCAGGTGTCTTACGCGTCCGTGTGAATCATACTTATCCCCTGTCTCAGGCGGCACAAGCACATACCGACCTTGAGAGCAGGAAAAC</gDNA_template>
            <first_frame> I  I  E  V  L  F  R  *  H  S  V  G  I  E  A  R  I  K  F  F  M  P  G  M  E  A  V  G  V  V  T  A  V  G  P  G  L  T  G  R  K  V  G  D  I  V  A  Y  A  G  G  V  M  G  A  Y  A  E  E  Q  I  L  P  A  D  K  V  V  P  V  P  P  S  I  D  P  I  V  V  A  S  I  L  L  K  G  M  T  A  Q  F  L  L  R  R  C  F  K  :  V  E  R  G  H  A  V  L  V  H  A  A  A  G  G  V  G  S  L  L  C  Q  W  A  N  A  L  G  A  T  V  I  G  T  V  S  T  K  E  K  A  A  Q  A  K  D  D  G  C  H  H  V  I  I  Y  K  E  E  D  F  V  T  R  V  N  E  I  T  S  G  Q  G  V  E  V  V  Y  D  S  V  G  K  D  T  F  Q  :  G  S  L  D  C  L  K  T  R  G  Y  M  V  S  F  G  Q  S  S  G  S  P  D  P  V  P  L  S  A  L  A  V  K  S  L  F  L  T  R  P  S  M  M  H  Y  T  M  T  R  D  E  L  L  E  T  A  G  E  V  F  A  N  V  A  S  G  V  L  R  V  R  V  N  H  T  Y  P  L  S  Q  A  A  Q  A  H  T  D  L  E  S  R  K   </first_frame>
            <second_frame>  S  *  K  Y  Y  L  G  S  I  Q  L  E  L  K  L  E  L  N  S  L  C  Q  V  W  R  L  *  G  L  *  Q  L  L  V  P  D  *  L  G  G  K  L  V  I  L  L  H  M  L  V  V  *  W  V  H  M  L  R  N  R  S  F  L  L  I  K  L  C  L  F  L  P  Q  L  T  P  L  L  *  H  P  Y  F  S  R  A  *  L  L  S  S  Y  C  A  A  A  S  K :   L  N  V  G  T  Q  Y  L  F  M  L  Q  Q  V  G  L  A  P  Y  C  A  N  G  Q  M  P  L  V  L  Q  S  L  G  L  Y  Q  L  K  R  K  Q  P  K  L  K  M  M  G  V  I  M  S  *  S  I  R  K  R  I  S  S  L  V  S  M  R  S  H  L  A  K  E  L  K  L  C  M  I  L  L  E  K  I  L  F  R :   D  H  *  T  A  *  K  L  V  D  T  W  *  V  L  G  S  H  L  A  H  Q  I  Q  Y  L  Y  Q  L  L  Q  *  N  R  Y  F  *  Q  G  L  A  *  C  T  T  Q  *  R  G  M  N  Y  *  K  L  P  E  R  Y  L  L  M  W  H  Q  V  S  Y  A  S  V  *  I  I  L  I  P  C  L  R  R  H  K  H  I  P  T  L  R  A  G  K  </second_frame>
            <third_frame>   H  R  S  I  I  *  V  A  F  S  W  N  *  S  *  N  *  I  L  Y  A  R  Y  G  G  C  R  G  C  N  S  C  W  S  R  I  D  W  E  E  S  W  *  Y  C  C  I  C  W  W  C  D  G  C  I  C  *  G  T  D  P  S  C  *  *  S  C  A  C  S  S  L  N  *  P  H  C  C  S  I  H  T  S  Q  G  H  D  C  S  V  P  T  A  P  L  L  Q   : S  *  T  W  A  R  S  T  C  S  C  C  S  R  W  G  W  L  P  I  V  P  M  G  K  C  P  W  C  Y  S  H  W  D  C  I  N  *  R  E  S  S  P  S  *  R  *  W  V  S  S  C  H  N  L  *  G  R  G  F  R  H  S  C  Q  *  D  H  I  W  P  R  S  *  S  C  V  *  F  C  W  K  R  Y  F  S   : G  I  I  R  L  L  K  N  S  W  I  H  G  E  F  W  A  V  I  W  L  T  R  S  S  T  F  I  S  S  C  S  E  I  A  I  S  D  K  A  *  H  D  A  L  H  N  D  E  G  *  T  T  R  N  C  R  R  G  I  C  *  C  G  I  R  C  L  T  R  P  C  E  S  Y  L  S  P  V  S  G  G  T  S  T  Y  R  P  *  E  Q  E  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0295L11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8951" stop="9220"/>
                    <exon start="10749" stop="11006"/>
                    <exon start="11390" stop="11665"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSVGIEARIKFFMPGMEAVGVVTAVGPGLTGRKVGDIVAYAGGVMGAYAEEQILPADKVVPVPPSIDPIVVASILLKGMTAQFLLRRCFKVERGHAVLVHAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHHVIIYKEEDFVTRVNEITSGQGVEVVYDSVGKDTFQGSLDCLKTRGYMVSFGQSSGSPDPVPLSALAVKSLFLTRPSMMHYTMTRDELLETAGEVFANVASGVLRVRVNHTYPLSQAAQAHTDLESRK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="105264" PGL_stop="109608"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105264" e_stop="105308"/>
            <exon e_start="106404" e_stop="106531"/>
            <exon e_start="109131" e_stop="109247"/>
            <exon e_start="109323" e_stop="109608"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.795" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105264" e_stop="105308" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="105309" i_stop="106403" i_length="1095"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106404" e_stop="106531" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.972">
            <gDNA_intron_boundary i_start="106532" i_stop="109130" i_length="2599"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109131" e_stop="109247" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.795" acc_prob="0.999">
            <gDNA_intron_boundary i_start="109248" i_stop="109322" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="109323" e_stop="109608" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105264" stop="105308"/>
              <exon start="106404" stop="106531"/>
              <exon start="109131" stop="109247"/>
              <exon start="109323" stop="109608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1386" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACTCGTACTTGAAGATGTCAGTCAAGACCATGCACGCAAGACG : GTGACCATTGAAGACCATCCACATCTTCCAGGGAAACATGCTTCTGTGCATCCTTGCCGACATGGGGCTGTGATGAAGAAAATTATTGATGTTTTGATGTTGAGAGGAGTTGAACCCGAAGTTGACAA : GTATCTTTTCCTGTTCTTGAAGTTTGTGGCTTCGGTTATTCCAACAATTGAATATGATTACACCATGGACTTTGATCTTGGTAGCAGTAGCACCTGATTTGCTGTCAACTTCCTTCG : ATTGATGCTGGCATATAACATGTCAACCAGTCAAATACTCTAATGGCAATACCTATTTATAAATTGTACAGTATTTATAAATGTTCTTCTAGAAATGTGGAGCATGCATGATGAATCGTCAGCATGCCTTGTTTATTTTGTATATTAACAAAGAATAAAGGTTATTCAAGTTTGCACTTTGCACGATCCACTGCAAGGCTGAAATTGTTTATTTAAGTTAAAGTTAGCAGGATGAAAGCTACATGAATAGTAAGTGATGATGTTTGTTTTATGCATCAAATGTCTA</gDNA_template>
            <first_frame> E  L  V  L  E  D  V  S  Q  D  H  A  R  K  T  :  V  T  I  E  D  H  P  H  L  P  G  K  H  A  S  V  H  P  C  R  H  G  A  V  M  K  K  I  I  D  V  L  M  L  R  G  V  E  P  E  V  D  K :   Y  L  F  L  F  L  K  F  V  A  S  V  I  P  T  I  E  Y  D  Y  T  M  D  F  D  L  G  S  S  S  T  *  F  A  V  N  F  L  R :   L  M  L  A  Y  N  M  S  T  S  Q  I  L  *  W  Q  Y  L  F  I  N  C  T  V  F  I  N  V  L  L  E  M  W  S  M  H  D  E  S  S  A  C  L  V  Y  F  V  Y  *  Q  R  I  K  V  I  Q  V  C  T  L  H  D  P  L  Q  G  *  N  C  L  F  K  L  K  L  A  G  *  K  L  H  E  *  *  V  M  M  F  V  L  C  I  K  C  L </first_frame>
            <second_frame>  N  S  Y  L  K  M  S  V  K  T  M  H  A  R  R :   *  P  L  K  T  I  H  I  F  Q  G  N  M  L  L  C  I  L  A  D  M  G  L  *  *  R  K  L  L  M  F  *  C  *  E  E  L  N  P  K  L  T   : S  I  F  S  C  S  *  S  L  W  L  R  L  F  Q  Q  L  N  M  I  T  P  W  T  L  I  L  V  A  V  A  P  D  L  L  S  T  S  F   : D  *  C  W  H  I  T  C  Q  P  V  K  Y  S  N  G  N  T  Y  L  *  I  V  Q  Y  L  *  M  F  F  *  K  C  G  A  C  M  M  N  R  Q  H  A  L  F  I  L  Y  I  N  K  E  *  R  L  F  K  F  A  L  C  T  I  H  C  K  A  E  I  V  Y  L  S  *  S  *  Q  D  E  S  Y  M  N  S  K  *  *  C  L  F  Y  A  S  N  V   </second_frame>
            <third_frame>   T  R  T  *  R  C  Q  S  R  P  C  T  Q  D   : G  D  H  *  R  P  S  T  S  S  R  E  T  C  F  C  A  S  L  P  T  W  G  C  D  E  E  N  Y  *  C  F  D  V  E  R  S  *  T  R  S  *  Q  :  V  S  F  P  V  L  E  V  C  G  F  G  Y  S  N  N  *  I  *  L  H  H  G  L  *  S  W  *  Q  *  H  L  I  C  C  Q  L  P  S  :  I  D  A  G  I  *  H  V  N  Q  S  N  T  L  M  A  I  P  I  Y  K  L  Y  S  I  Y  K  C  S  S  R  N  V  E  H  A  *  *  I  V  S  M  P  C  L  F  C  I  L  T  K  N  K  G  Y  S  S  L  H  F  A  R  S  T  A  R  L  K  L  F  I  *  V  K  V  S  R  M  K  A  T  *  I  V  S  D  D  V  C  F  M  H  Q  M  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0295L11.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105264" stop="105308"/>
                    <exon start="106404" stop="106531"/>
                    <exon start="109131" stop="109227"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELVLEDVSQDHARKTVTIEDHPHLPGKHASVHPCRHGAVMKKIIDVLMLRGVEPEVDKYLFLFLKFVASVIPTIEYDYTMDFDLGSSST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 14 chains have been computed
$ 
$ memory statistics:
$ 7096 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 2365 bytes was the average size of a spliced alignment
$ 6864 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3432 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 14 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:59:27
-->
