<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:47:36"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287442" ref_strand="+" ref_description="SGN-E287442 [cLES-15-J23]">
      <seq>ataaatgggttgagaagggaacggcgccagccttggggtccagcttgaagctttatcaagaagttctgaagctgggattcaaagttttcttgctgactgggcgcagtgaaagacacagaagtgttactgtggagaatttgatgaatgctggattccacgattggcacaagctcattctaagaggctcggacgaccatggcaaaacagcaacaacctataaatcagagagacgaaatgagatggtagaagaaggtttccgcatagtgggcaactcaggagaccaatggagtgatctgctaggctcctctatgacttatcgctcattcaagcttccaaacccgatgtattacattctttaaagtaactaataggtttggtagtccatgttgatgcaacatgccaatgattatttcttttcactgcaatggaactgtaattcttataatcccttaaactggagatcattgatgattcaattaatgtatgccgtagcagcaacaattgtgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="3685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="134" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="181" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135" i_stop="3057" i_length="2923">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3058" g_stop="3385" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="509" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E287442" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="134"/>
          <exon e_start="3058" e_stop="3385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTTATCAAGAAGTTCTGAAGCTGGGATTCAAAGTTTTCTTGCTGACTGGGCGCAGTGAAAGACACAGAAGTGTTACTGTGGAGAATTTGATGAATGCTGGATTCCACGATTGGCACAAGCTCATTCTAAGGTGAGTAAATGAGTATGGTTTTATGAATAAAGTTTGTTGATTTCATTCCTGGTGTTACCGTGATAAAAATGGAAAACATATATGAAACATTCAGAATGAAATTTGTTTAAAATCTAAATGTATGCTCTGAGTATTGTCACGACCCAAACCGGGTTGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCCTAACATTTCAATGTAATAACAACAGAAAATAATGCGGAAGACTTAAACTCATTAATAAAACCAATTCAATAACTATTATTCCCAAAACCTGGAAGTCATCATCACAAGAACATCTACTTTAAACTACTAATTCTAAGAGTTTCTAAAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGAAGTTTCAAGGCATCGAGACATGAAGGAGAAGATCCAGTCCAAGATAGACGCGTTAGCTCACCCTGAAGCTCCGATGTGACGAAGACTGGCTTGAGTTACTATTGAGTCGAAGATGACGGCACGTTTGCTGCACTCCACAAATAACAAGAAGAAAAACATAAAAGTAGGGGTCAGTACAAACCACGGGTACTGAGTAGATATCATTGACCAACTCAAAATAGGGAACAGTATGTATTAAGCAATATCATAAAATCAACTAATATCCTTAACATGCAGCATTTATAGTTACCATAACCCTTGGTTACAATACCAAGCACATCAATGAGGACTCACACCTCCTCATCACACTCATTTGGGAATTTAGTTCATTAGATTGGATATATTATCATATTTCAAGATTCATTATCTTTATTCCCCTCGTGTCGGTACGTGACACTCCACTCCTCAATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATACTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACTACTTTCATTCATCAAGCCTTCTTTCATACCAAGGCATCATCATTATCAAAGTAGATTAGGGTTTCTTTTCAAGATTTGGGATTCAATAGCTTCATCATGCTTATTTATTCATAATTACATAATCACATCATTCATGCAAGCATACAATTAAGCATATAGAAGGTTTACCATACTACTAACACATATCATTCGCTATTAAGAGTTTACTACGAATAGCATGAAATAACCATAACCTACCTCCACCGAAGAGTTGAATCAAGCAAGAATTTTCCCAAAGCTTTGTTTCTCCCTTCTCGTTCGATTCCCTCTCTTTCCCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTACGAATAAAAGATGGCAATAATACCCCACTAATTAACTTAGGGTTACCTCTTTTAACCCCTTAAGAATTTTAGTTATTAATATAACCCCACGAAATCTATAATTAAGGAAAGAATAGTCAAAAACGTCCCTTAAAACTTAACCAGAAATCCGACTCCAACTGGGATTATGCAAACTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAGAGTTCAGAGACCCAAATTTCCACCAAGGGTCTGTGACGGTCCGTCACACCTGTGACGGTCTGTGACGGTCCGTCCTGCCATTCCGTCACAAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGCCCTTGACGGTCCGTCGTGGGGTCCGTCGCTTTTGCTAGTTTTTTCCAGAATTGAAGTCTGTTGCCAAAACGACTAAACAGGTCGTTACAAGTATACTGCTCACTTACTTGTATGTGCATATATTTGCTGCAAAATCATACTTCATTCAGTAGTTGCCAATGTTTTTCAATGTGTTTCTCCAATCACAATGTGATTTCACATTGATGAACATTGGCAAGTAGATCTAAGTAATGCATTTTTCATGTTGCTGTACTGCAGATTGTTCTTGTAAAGTTCATTTTTTTAATTTAGTCGGGTACATTTTACTTATCTCACCTATCCATGACATGTCTGATGCCAGATGATGATTGATTAGTGTTGCAGATGCATTAATCTTTCTCATTTTCTTCTTGCTGAAAAACACATGATCAACTCATTTTGTCTGGATCTTTAGATTTGTTCAAAATGGAGTTTGAATATGTTTGATATACATCATATTCATGATTAGTTATAGAATGGGACATATAACTCAGAGAAGGGAATGTTTGTGGACTCTGTAAATCTCCATGGTTATGCTTAGTATTTGAACACATCTCTTGTTTTTTCCTCGTCTGACTCTGTAAATCTCCATGGTTGTGCTTATCCCAGTCTGGGGACTCTGTGAATCTCCATTGTTGTGCTTACTATTTGAACACCTCTTGTTTTTTCCTAATCTGGACACAAATCAGTGCTAATGTAACTACGATATCATGCCGGGGAAATACTAACTACCCCTCAAACTAAAACCGAATTCTCAACTACACCAATTATGCTTTGCGGGGGTGGGGGTGGGGGGGAGGCGGTCCTACTACCCCAGATTTAAAAATAGAATTATTACCAACCTGAAAAGCCACAACCAGATGTGTGTTACATGAGTGATATACACATGCTTTACACGTTTACGTTACTGCTTTAACTTTTTTTTTTAGTACTTGTTTTGCTTATGCTTCTTTTTGTAGCTATCTTCCAGTGTGTTGTTGAAAATTCAATCATAATTAGAAGAGGTTACTTTTGCCTTTTCACCATAGTGAAATTTTGCTAATGATTCTGATTCTATGCAGAGGCTCGGACGACCATGGCAAAACAGCAACAACCTATAAATCAGAGAGACGAAATGAGATGGTAGAAGAAGGTTTCCGCATAGTGGGCAACTCAGGAGACCAATGGAGTGATCTGCTAGGCTCCTCTATGACTTATCGCTCATTCAAGCTTCCAAACCCGATGTATTACATTCTTTAAAGTAACTAATAGGTTTGGTAGTCCATGTTGATGCAACATGCCAATGATTATTTCTTTTCACTGCAATGGAACTGTAATTCTTATAATCCCTTAAACTGGAGATCATTGATGATTCAATTAATGTATGCCGTAGCAGCAACAATTGTGCAT</genome_strand>
        <mrna_strand>AAGCTTTATCAAGAAGTTCTGAAGCTGGGATTCAAAGTTTTCTTGCTGACTGGGCGCAGTGAAAGACACAGAAGTGTTACTGTGGAGAATTTGATGAATGCTGGATTCCACGATTGGCACAAGCTCATTCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCGGACGACCATGGCAAAACAGCAACAACCTATAAATCAGAGAGACGAAATGAGATGGTAGAAGAAGGTTTCCGCATAGTGGGCAACTCAGGAGACCAATGGAGTGATCTGCTAGGCTCCTCTATGACTTATCGCTCATTCAAGCTTCCAAACCCGATGTATTACATTCTTTAAAGTAACTAATAGGTTTGGTAGTCCATGTTGATGCAACATGCCAATGATTATTTCTTTTCACTGCAATGGAACTGTAATTCTTATAATCCCTTAAACTGGAGATCATTGATGATTCAATTAATGTATGCCGTAGCAGCAACAATTGTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="-" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1196" stop="361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="896" g_stop="661" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="896" e_stop="661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACTAAATTCCCAAATGAGTGTGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTATTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGTCAATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTCTTGTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="-" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1566" stop="452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1266" g_stop="752" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="-" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1266" e_stop="752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGATAATGATGATGCCTTGGTATGAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGTATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATTGAGGAGTGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTGTGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTATTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705392" ref_strand="+" ref_description="SGN-E705392 [FA27AA12]">
      <seq>gggaatctggcacctctgttgattgacaaataatgcgattaacttcacttcgttgctacaatcttcttctacctaattctttcatttctcgcttcacaagagctattactactagtaatcaaaaaggccgcaagtgtattcctttacaaacaactactgtcagattagcagtaagagctcactctgtatcaccagcatcaatggtcaaagccattagggttcatgaacttggtggtcctgaggtcctcaaatgggaggacgttgaactgggagacccaaaagatggagagatcagggtgaagaataaggtcattggcctcaacttcattgacatatatttccggaaaggagtctacaaagctgctgcatttccctttacaccaggtatggaggctgtaggggttgtaacagctgttggtcccggattgactgggaggaaagttggtgatattgttgcatatgctggtggtgtgatgggtgcatatgctgaggaacagatccttcctgctgataaagttgtgcctgttcctccctcaattgaccccattgttgtagcatccatacttctcaagggcatgactgctcagttcctactgcgccgctgcttcaaagttgaacgtgggcacgcagtacttgttcatgctgcagcaggtggggttggctccctattgtgccaatgggcaaatgcccttggtgctacagtcattgggactgtatcaactaaagagaaagcagcccaagctaaagatgatgggtgtcatcatgtcataatctataaggaagaggatttcgtcactcgtgtcaatgagatcacatctggccaaggaagtgaagttgtgtatgattctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4131" stop="11287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4431" g_stop="4672" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4673" i_stop="7976" i_length="3304">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7977" g_stop="8118" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="384" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8119" i_stop="8993" i_length="875">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8994" g_stop="9220" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="611" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9221" i_stop="10748" i_length="1528">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10749" g_stop="10987" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="850" r_length="239" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E705392" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4431" e_stop="4672"/>
          <exon e_start="7977" e_stop="8118"/>
          <exon e_start="8994" e_stop="9220"/>
          <exon e_start="10749" e_stop="10987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAATCTGGCACCTCTGTTGATTGACAAATAATGCGATTAACTTCACTTCGTTGCTACAATCTTCTTCTACCTAATTCTTTCATTTCTCGCTTCACAAGAGCTATTACTACTAGTAATCAAAAAGGCCGCAAGTGTATTCCTTTACAAACAACTACTGTCAGATTAGCAGTAAGAGCTCACTCTGTATCACCAGCATCAATGGTCAAAGCCATTAGGGTTCATGAACTTGGTGGTCCTGAGGTCTATTTCTTATCTCTCTCTCTATATATTAAAATTTGTTATATTATCAAAATAAGAAGAAGAATCAAATGCTAATGGTTTTTAATCTGGATGATCATGATTACATTATGCTGAATTAAAAATTCAATCTTTGCAAAAATTAGTTGAGGTGGCTGAAAGTTGGCCGGGACACCACAGTCGTAAAACGAAAGGTTGCATGTACAATAACATTTATATAATTAGATTTAAAGAGTATTAACTCTCAAAGAAGTTACTTTTGTTATAGATTTGGGAGTTGTCATCTATCTAGTTAGTAAGATGTTGAAAAGAGTAGGAGAAGGGATCATTTCCACTTGAAGAGGCTTGTTTGAATAAGAAGTTGGACACTTGATTGGCTTCCCTAAAAGTGTGAAATCTTCATATTTGCACCATTTATATCTTTGAAGATGTCTCTGATACCTTTGAGTTTGTGATAATTAATGATCTTGTTATTGATCATGTCAGTAATCTTTAAGGAGTCCAATTCAAGGTCATGAGTTTTGAATCTAGCCTGTTTGTACCAGTTAGCATCATACATAGTGGCCATTGCCTCTGTCTGATTGTTGCTTTTATATTGAATGGAACTGAAATGGGCATGATCAGGCTGTCAGAATCATTCCTCACCGTGCCACCAATACGTGTTGTGTTATATTGCTGGGTGTAGTTTCCATTACCATCAGTGTTAACTTCAATCCTTCCAAGCATTGGTTTGGTCCAAGTACAGACACCTGATGACTGATCTGAATATTTCAATTCCTTGACATAGTTTTATTTTTTTATTTTTTTCATAGAGTAACTTTGTATTCATATGAAAACAATCATCCAAAAGTGATGAGATGTTAGTTACAAGTTACAACCCTCACTGGACATTGCAAGAAAGAGACAGCCCCCAAAACACCTTGCATTTCTTTCCTTCCATAAGATCCACCAAATAAAGTCTGGAATCAGTTTCCACCAGTCTTCCTCAGAAATTCTTCTTCGAATTGTCTCCCAGCTCCTCAGCAAATCAGAAGTGTTCTAAGGAATTGTCCATCTTAACTCCAAGCATATATAAGAACATTCTAAGGAATTGTCCAGCTTAACTCCAAGCATATATAAGAACAGGCTCCGCAGATTTACAATTGTTATGCAGTGTATGGACTAGGAAGAGGTGGTTGTCTACCTCTGCTTCCTTGTCACAAAGAAAACACCTTGAGCCTTTTCTATATAGTGCTTCATGGGTTAGGCAACTTCTTCTATGTCAATTCTTTGACATAGTTGAGTTCAGTTGCCTGAAATATCACAGCTAGGAAATGCCACTGATATGTCTGTCTTTTTGTTCCATAGGTTATGCATTTCCTTATTGGAAGTAACAAATCTTTTCTGGTTACCATATTCACAAGAAGTCCACCATATTCATAAGAAGTCCAGCTCCTCCAAATTTCCCAACAACAACATACCCACTGCAATCATACTTCCTCCAAATTTCCCAACAAATACAAATAGGAACTATTTGTTGAATCAGTTATTGATAGTCTAAACATCCCACCACATATTGAAAATTCCTTTACAGCACAAGAGTGATGTCTAACTCCCAGAGGATTACCAAAGAAGTTCCAAACATAACAAGCAGCCTCACCATCAATAAAAACATGATTCATTGTATCACAAGTAGGTTTAGCACAACAAAAGCATCTAGAGACTGATTGTTTATCAACATTATGGAGAATCTCATCGAAAGGTAATTTTAAGAATCAATCTCCAAGTAAGAAATGAAACTTTAAAAGGCAAACATTTATGCCATACCTTGTCAAGAGTGATGTCCTTCTGCCTATGTTGTCTGATGATTTGCCATGCTGACAAAGTGCAAGAGGCCACTGTGCAAGAGGTTTGGTCCATTCATGGATGGAACTTAACATATAGAATGATGATACAAGACTGGGAGGTGGATAGACTAGCTGAATTTTATGGCACCTCGGACCATTTTCGAGGATTGGAAGAGGGAGAAGACACTCTTAGGTGGATTCATCATAGCAAAGGTGTCTTCATAGTTAGCTCTGCCTACAAGAACCTGAATCAAATGGGGACTCAACTCAGATTTTTGCCTTGGAAGCTTATCTGGAAAGTCAAAATTCCATATAAGGTGGTAGTTTTTACTTGGTTGGTAGTTAAAGAGGCGGTACTAACACAGGAAAATCTAATGAAGAGGGGAATACATGTGTGTCCTAGATATTTTTTTTTTGTGAGCAACAGGCAGAGACAATCAACCATTTGTTTATTCATTGCAAGGTGGTTAGACAACTGTGGCACTTATTTACCATATTCAGGGGCACAAACTGGACCATGCCACAAAGGGCAAGTCAGGCTATAGAAAGCTGGAACAATGAAGGCAGTGGTAGTACAGACCAAAGCAAATGGAGAATTGTCCCAACAGTGATTTGGTAGACCATATGGAAGGAGAGGAATATGAGATGCTTTGAGAGTGTTAGTAGTCCTTTACGCAGGATTAAAATGAACTGCACAATCACTTTTTGCTATTGGTGCATTTTGGAGTATGTAGATGATCCTATAGCTGTTAGAGATATCCTAGGTCCTTTGTTGATGAAGTAGGAGCTAGTTTAGTTTTGTGTAAGTACACGCAACTGTATGTAGTTCCATGATGTAAATATGGGACCCCAGCCTTTAGTGCTGAAGATTAATACACAGTACTGTTACCGTTGTCAAAAAAAAAAGTCATGACTTTCTTGATCTCCAATGGGAATCCCCCCCCCCTCCGGCCCCATGCTGCAACAACCATCATCGATATTCCAAAGAATGTCTTTTTCAGTGTTCTCCCTAGCTTTAGTTAGAGATTTACATACCTGAGAGGTTCCACTTGTCCATGCCTTGGACACTGGATGAACCCTATTGCAATATTTGGCCCTCATGAAATCAGCCATAAAGAAGGCTGAGTCCTGAACTTCCACCATCTTTTGATGGCTAAGGTGTTGGAGATGTCATTCATGTTTCTGATAACAATATCACCCTCATCTTTAGGAAAACACAAGTTATTCTAAGATCTCCAGTGATATTTTGCTTTGTAATCATTGGATCTGCTGTCACATTCACGTTCGTAAATTAGAATCTTAATTGATGGGTCTTTCAATTCTTTGGACACAATACTAAATTTTAGTGTGATAAATTCTATGTTCGCTTTTTTGTGTTTAGAGGAAGCAGGAGAATAAATATTAATGGCAGCCTACTTTTTTAATTTGCATCAACAGAAATTTATTAACCAGTTATTTACAACAAGCCTATTGTTTTGTAGGTCCTCAAATGGGAGGACGTTGAACTGGGAGACCCAAAAGATGGAGAGATCAGGGTGAAGAATAAGGTCATTGGCCTCAACTTCATTGACATATATTTCCGGAAAGGAGTCTACAAAGCTGCTGCATTTCCCTTTACACCAGGTGCTTTCAATCCCCTCTCTCAATTATTTTCTATTCTTCTACATGTTTACGAACATTTCAAGTATAATATGATCCTATTTTAAAGAAGATTCTATTGGAGCCCGCTGGTTTTAGGCATCCTGTAACTTGAATATCTTCTGCTGGTTATGATTAGCTTTGGAACTGCATCATATGCAAAAAGAAAAGCCTGCATCTGCTTCGGCATGAATATCTCAACCAAACATGGGATGCTTTGTTATTTGAAAGTTAAATCGGTTTTCTCTATGTGGAGGACCGGAGGTTTGCCCTATTCGGGAAGCTCCAGATCTATGCTTAGTTTCAACTCCCTAAAGCTCATCGTTGATTACTATCTCCTTCCACTCAAGCCTATTATCCACTTTAATACTAGTTTTAAGTACTGAAAATCTGCCATTTAGCAATGATTCACAATGCAGTAGACTAAAGAGGTGAAGTAAATTAGATGCGTAAAGATTCTGCTTTACTGCAAGTCTGATCCATATACTTATCCAACCAAATAAATAGGGGGGATTGTGTACTTCTCATCATCACAATCGACACTTAATTAGTGAGGTTCTTGTTTTTTCTAGAGAGTATTTGTTTTTTGTGTATCAAGTTATCAACTGTGTGTATTTGTACGGTTTAACCCCTTTATCATCTCTTCGTCCTAGATTCTAAAATATGGAGTTACCAACTTTGTTTTTGTTTTGTCGGAGGAAAAACGATATTCAGTCAGGCCTATGGCTGGATCCTTTTAGATCTAGGGGCCGGCAGAACATGATAGAAGCGTTTCATTTATAAGGTATCGAAGATCATAGAAGTATTATTTAGGTAGCATTCAGTTGGAATTGAAGCTAGAATTAAATTCTTTATGCCAGGTATGGAGGCTGTAGGGGTTGTAACAGCTGTTGGTCCCGGATTGACTGGGAGGAAAGTTGGTGATATTGTTGCATATGCTGGTGGTGTGATGGGTGCATATGCTGAGGAACAGATCCTTCCTGCTGATAAAGTTGTGCCTGTTCCTCCCTCAATTGACCCCATTGTTGTAGCATCCATACTTCTCAAGGGCATGACTGCTCAGTTCCTACTGCGCCGCTGCTTCAAAGTATGTACATCATAATCTTACAGCAGCCGAGTTTCCTCTATTCTTTTTTTCCATCTGTTCCTTCTTTAGTTAAAGTAGACATGCTTATATTATAAACTAGATGATTTAGATTATCTAGTGCGGAAGAAGTCCTCAACTCTTACAAATTTACCAGTTTTAAAAAAGAAGTCCTCAACTCTGACATGGGCATGATTGAGTGTTTGTTTTATGATTTAGATGTTTTTCCCTACATGTTAATCAATGTGATCATATATAGGACAATTTAAGGGAAGATACAAAATATTTGATTGTCTCTTATTACTGGAAATTCAATCTTTAGATATTGACTGGAGTACTAATGGATGATTAGCAATTAGACGCATATCCCATGATTGAAGTTCCTTTATCCATACTCTCCTTTTTTAAGTAAATTAATCTATTTCTTGGTGATTCACAGCAGGTTGCTAGGTCCTATTGCTTTTGACTACTGCATCATGTGTTTCTCTTAGTTATTGCATGAGTAATTACAACTTGAAGAAGTAAACGTCATAGTCCCCAGTGATATGTCTTGAGAAAAACCAATACCGTTGCTTGTGATATTTGGTGTGTAATTTAGAAGTTGAGGGCTAGTAATCTGGATGCGCATATGGATCTTTTCCTCTTCTTCATTTTGAAGATTTCCAGCTTTTAAATTTCATATGATTGTTCTCTTGATAATGGAAGACTATGTGTCCTATCAGTGTTACAAAGCCATAAGCACCATCATTACTTCATTTTTGTCTCCAGGTATCGGGCAGATCTGTGTTCTGGATGGCTGTGCTCTTAAAATCTTGATATTCTCTGTACCAAAGCAACTTTGGGAAACTGTGAAATGGAAGATATTCTTTAATTTCCTGCTGGTTTAGTTGGTTGTTTGCAGCTAGTTAGTGAAGCAGATAAAACATCAGAAAATATAAAATATGACTAAATTGAATGCTTGAAAGCGCGAAGATTATGGAATACATTTTATTATGAGTGCATTGTCTTCCAGTTTCTACAAGGTTAAGCAGTTAACATAAAGTATCTCCGCTCTCTCCTGATCAGAATCAGGTTCCCCATAAATTGGATTCTTAGAGATTTACAGAATTACTTGGGAATCCCAAACCATGGGAAGGGGGACCAAAGGCTTCTAAACTAAATCTGGAGGTTAATGCAGTCCAGTTTGTAGAATAGTGTGCTATAATAAATACAACATGCTGAACATGAACCCGCTCTGCTTCCCAGATTGGTAATTTTAAGAGGGCTGAAAGGAAAAGAAATGACCTTTCTAGCCTCATTGTTTCTCAAAAAAAGAAGTGACCTTTCAATGGTTTTGGCATGTAATGTTTGTGCAACAAATTGCAATTTGCTGTCTTCTTGGAATTTCATCCATCCATTTCCTTTTCATTCAAACTTAATTCTTTTAAAATTCTTTTAATTGAATAGATTTTCCTCTCATTTGCATAAATTCAAACTAAGATATAGCTTCTTTACTTTCGTCAAATTTATACTGTCTTGCAATGTGTTACAGGTTGAACGTGGGCACGCAGTACTTGTTCATGCTGCAGCAGGTGGGGTTGGCTCCCTATTGTGCCAATGGGCAAATGCCCTTGGTGCTACAGTCATTGGGACTGTATCAACTAAAGAGAAAGCAGCCCAAGCTAAAGATGATGGGTGTCATCATGTCATAATCTATAAGGAAGAGGATTTCGTCACTCGTGTCAATGAGATCACATCTGGCCAAGGAGTTGAAGTTGTGTATGATTCTGT</genome_strand>
        <mrna_strand>GGGAATCTGGCACCTCTGTTGATTGACAAATAATGCGATTAACTTCACTTCGTTGCTACAATCTTCTTCTACCTAATTCTTTCATTTCTCGCTTCACAAGAGCTATTACTACTAGTAATCAAAAAGGCCGCAAGTGTATTCCTTTACAAACAACTACTGTCAGATTAGCAGTAAGAGCTCACTCTGTATCACCAGCATCAATGGTCAAAGCCATTAGGGTTCATGAACTTGGTGGTCCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTCAAATGGGAGGACGTTGAACTGGGAGACCCAAAAGATGGAGAGATCAGGGTGAAGAATAAGGTCATTGGCCTCAACTTCATTGACATATATTTCCGGAAAGGAGTCTACAAAGCTGCTGCATTTCCCTTTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGAGGCTGTAGGGGTTGTAACAGCTGTTGGTCCCGGATTGACTGGGAGGAAAGTTGGTGATATTGTTGCATATGCTGGTGGTGTGATGGGTGCATATGCTGAGGAACAGATCCTTCCTGCTGATAAAGTTGTGCCTGTTCCTCCCTCAATTGACCCCATTGTTGTAGCATCCATACTTCTCAAGGGCATGACTGCTCAGTTCCTACTGCGCCGCTGCTTCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAACGTGGGCACGCAGTACTTGTTCATGCTGCAGCAGGTGGGGTTGGCTCCCTATTGTGCCAATGGGCAAATGCCCTTGGTGCTACAGTCATTGGGACTGTATCAACTAAAGAGAAAGCAGCCCAAGCTAAAGATGATGGGTGTCATCATGTCATAATCTATAAGGAAGAGGATTTCGTCACTCGTGTCAATGAGATCACATCTGGCCAAGGAAGTGAAGTTGTGTATGATTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335070" ref_strand="+" ref_description="SGN-E335070 [cTOE-9-J10]">
      <seq>aacttcacttcgttgctacaatcttcttctacctaattctttcatttctcgcttcacaagagctattactactagtaatcaaaaaggccgcaagtgtattcctttacaaacaactactgtcagattagcagtaagagctcactctgtatcaccagcatcaatggtcaaagccattagggttcatgaacttggtggtcctgaggtcctcaaatgggaggacgttgaactgggagacccaaaagatggagagatcagggtgaagaataaggtcattggcctcaacttcattgacatatatttccggaaaggagtctacaaagctgctgcatttccctttacaccaggtatggaggctgtaggggttgtaacagctgttggtcccggattgactgggaggaaagttggtgatattgttgcatatgctggtggtgtgatgggtgcatatgctgaggaacagatccttcctgctgataaagttgtgcctgttcctccctcaattgaccccattgttgtagcatccatacttctcaagggcatgactgctcagttcctactgcgccgctgcttcaaagttgaacgtgggcacgcagtacttgttcatgctgcagcaggtgggggttggctccctattgtgccaatgggcaaatgcccttggtgctacagtcattgggactgtatcaactaaagagaaagcagcccaagctaaagatgatggggtgtcaatcatgtcataatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4171" stop="11213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4471" g_stop="4672" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4673" i_stop="7976" i_length="3304">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7977" g_stop="8118" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="344" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8119" i_stop="8993" i_length="875">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8994" g_stop="9220" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="571" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9221" i_stop="10748" i_length="1528">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10749" g_stop="10913" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="739" r_length="168" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E335070" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4471" e_stop="4672"/>
          <exon e_start="7977" e_stop="8118"/>
          <exon e_start="8994" e_stop="9220"/>
          <exon e_start="10749" e_stop="10913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCACTTCGTTGCTACAATCTTCTTCTACCTAATTCTTTCATTTCTCGCTTCACAAGAGCTATTACTACTAGTAATCAAAAAGGCCGCAAGTGTATTCCTTTACAAACAACTACTGTCAGATTAGCAGTAAGAGCTCACTCTGTATCACCAGCATCAATGGTCAAAGCCATTAGGGTTCATGAACTTGGTGGTCCTGAGGTCTATTTCTTATCTCTCTCTCTATATATTAAAATTTGTTATATTATCAAAATAAGAAGAAGAATCAAATGCTAATGGTTTTTAATCTGGATGATCATGATTACATTATGCTGAATTAAAAATTCAATCTTTGCAAAAATTAGTTGAGGTGGCTGAAAGTTGGCCGGGACACCACAGTCGTAAAACGAAAGGTTGCATGTACAATAACATTTATATAATTAGATTTAAAGAGTATTAACTCTCAAAGAAGTTACTTTTGTTATAGATTTGGGAGTTGTCATCTATCTAGTTAGTAAGATGTTGAAAAGAGTAGGAGAAGGGATCATTTCCACTTGAAGAGGCTTGTTTGAATAAGAAGTTGGACACTTGATTGGCTTCCCTAAAAGTGTGAAATCTTCATATTTGCACCATTTATATCTTTGAAGATGTCTCTGATACCTTTGAGTTTGTGATAATTAATGATCTTGTTATTGATCATGTCAGTAATCTTTAAGGAGTCCAATTCAAGGTCATGAGTTTTGAATCTAGCCTGTTTGTACCAGTTAGCATCATACATAGTGGCCATTGCCTCTGTCTGATTGTTGCTTTTATATTGAATGGAACTGAAATGGGCATGATCAGGCTGTCAGAATCATTCCTCACCGTGCCACCAATACGTGTTGTGTTATATTGCTGGGTGTAGTTTCCATTACCATCAGTGTTAACTTCAATCCTTCCAAGCATTGGTTTGGTCCAAGTACAGACACCTGATGACTGATCTGAATATTTCAATTCCTTGACATAGTTTTATTTTTTTATTTTTTTCATAGAGTAACTTTGTATTCATATGAAAACAATCATCCAAAAGTGATGAGATGTTAGTTACAAGTTACAACCCTCACTGGACATTGCAAGAAAGAGACAGCCCCCAAAACACCTTGCATTTCTTTCCTTCCATAAGATCCACCAAATAAAGTCTGGAATCAGTTTCCACCAGTCTTCCTCAGAAATTCTTCTTCGAATTGTCTCCCAGCTCCTCAGCAAATCAGAAGTGTTCTAAGGAATTGTCCATCTTAACTCCAAGCATATATAAGAACATTCTAAGGAATTGTCCAGCTTAACTCCAAGCATATATAAGAACAGGCTCCGCAGATTTACAATTGTTATGCAGTGTATGGACTAGGAAGAGGTGGTTGTCTACCTCTGCTTCCTTGTCACAAAGAAAACACCTTGAGCCTTTTCTATATAGTGCTTCATGGGTTAGGCAACTTCTTCTATGTCAATTCTTTGACATAGTTGAGTTCAGTTGCCTGAAATATCACAGCTAGGAAATGCCACTGATATGTCTGTCTTTTTGTTCCATAGGTTATGCATTTCCTTATTGGAAGTAACAAATCTTTTCTGGTTACCATATTCACAAGAAGTCCACCATATTCATAAGAAGTCCAGCTCCTCCAAATTTCCCAACAACAACATACCCACTGCAATCATACTTCCTCCAAATTTCCCAACAAATACAAATAGGAACTATTTGTTGAATCAGTTATTGATAGTCTAAACATCCCACCACATATTGAAAATTCCTTTACAGCACAAGAGTGATGTCTAACTCCCAGAGGATTACCAAAGAAGTTCCAAACATAACAAGCAGCCTCACCATCAATAAAAACATGATTCATTGTATCACAAGTAGGTTTAGCACAACAAAAGCATCTAGAGACTGATTGTTTATCAACATTATGGAGAATCTCATCGAAAGGTAATTTTAAGAATCAATCTCCAAGTAAGAAATGAAACTTTAAAAGGCAAACATTTATGCCATACCTTGTCAAGAGTGATGTCCTTCTGCCTATGTTGTCTGATGATTTGCCATGCTGACAAAGTGCAAGAGGCCACTGTGCAAGAGGTTTGGTCCATTCATGGATGGAACTTAACATATAGAATGATGATACAAGACTGGGAGGTGGATAGACTAGCTGAATTTTATGGCACCTCGGACCATTTTCGAGGATTGGAAGAGGGAGAAGACACTCTTAGGTGGATTCATCATAGCAAAGGTGTCTTCATAGTTAGCTCTGCCTACAAGAACCTGAATCAAATGGGGACTCAACTCAGATTTTTGCCTTGGAAGCTTATCTGGAAAGTCAAAATTCCATATAAGGTGGTAGTTTTTACTTGGTTGGTAGTTAAAGAGGCGGTACTAACACAGGAAAATCTAATGAAGAGGGGAATACATGTGTGTCCTAGATATTTTTTTTTTGTGAGCAACAGGCAGAGACAATCAACCATTTGTTTATTCATTGCAAGGTGGTTAGACAACTGTGGCACTTATTTACCATATTCAGGGGCACAAACTGGACCATGCCACAAAGGGCAAGTCAGGCTATAGAAAGCTGGAACAATGAAGGCAGTGGTAGTACAGACCAAAGCAAATGGAGAATTGTCCCAACAGTGATTTGGTAGACCATATGGAAGGAGAGGAATATGAGATGCTTTGAGAGTGTTAGTAGTCCTTTACGCAGGATTAAAATGAACTGCACAATCACTTTTTGCTATTGGTGCATTTTGGAGTATGTAGATGATCCTATAGCTGTTAGAGATATCCTAGGTCCTTTGTTGATGAAGTAGGAGCTAGTTTAGTTTTGTGTAAGTACACGCAACTGTATGTAGTTCCATGATGTAAATATGGGACCCCAGCCTTTAGTGCTGAAGATTAATACACAGTACTGTTACCGTTGTCAAAAAAAAAAGTCATGACTTTCTTGATCTCCAATGGGAATCCCCCCCCCCTCCGGCCCCATGCTGCAACAACCATCATCGATATTCCAAAGAATGTCTTTTTCAGTGTTCTCCCTAGCTTTAGTTAGAGATTTACATACCTGAGAGGTTCCACTTGTCCATGCCTTGGACACTGGATGAACCCTATTGCAATATTTGGCCCTCATGAAATCAGCCATAAAGAAGGCTGAGTCCTGAACTTCCACCATCTTTTGATGGCTAAGGTGTTGGAGATGTCATTCATGTTTCTGATAACAATATCACCCTCATCTTTAGGAAAACACAAGTTATTCTAAGATCTCCAGTGATATTTTGCTTTGTAATCATTGGATCTGCTGTCACATTCACGTTCGTAAATTAGAATCTTAATTGATGGGTCTTTCAATTCTTTGGACACAATACTAAATTTTAGTGTGATAAATTCTATGTTCGCTTTTTTGTGTTTAGAGGAAGCAGGAGAATAAATATTAATGGCAGCCTACTTTTTTAATTTGCATCAACAGAAATTTATTAACCAGTTATTTACAACAAGCCTATTGTTTTGTAGGTCCTCAAATGGGAGGACGTTGAACTGGGAGACCCAAAAGATGGAGAGATCAGGGTGAAGAATAAGGTCATTGGCCTCAACTTCATTGACATATATTTCCGGAAAGGAGTCTACAAAGCTGCTGCATTTCCCTTTACACCAGGTGCTTTCAATCCCCTCTCTCAATTATTTTCTATTCTTCTACATGTTTACGAACATTTCAAGTATAATATGATCCTATTTTAAAGAAGATTCTATTGGAGCCCGCTGGTTTTAGGCATCCTGTAACTTGAATATCTTCTGCTGGTTATGATTAGCTTTGGAACTGCATCATATGCAAAAAGAAAAGCCTGCATCTGCTTCGGCATGAATATCTCAACCAAACATGGGATGCTTTGTTATTTGAAAGTTAAATCGGTTTTCTCTATGTGGAGGACCGGAGGTTTGCCCTATTCGGGAAGCTCCAGATCTATGCTTAGTTTCAACTCCCTAAAGCTCATCGTTGATTACTATCTCCTTCCACTCAAGCCTATTATCCACTTTAATACTAGTTTTAAGTACTGAAAATCTGCCATTTAGCAATGATTCACAATGCAGTAGACTAAAGAGGTGAAGTAAATTAGATGCGTAAAGATTCTGCTTTACTGCAAGTCTGATCCATATACTTATCCAACCAAATAAATAGGGGGGATTGTGTACTTCTCATCATCACAATCGACACTTAATTAGTGAGGTTCTTGTTTTTTCTAGAGAGTATTTGTTTTTTGTGTATCAAGTTATCAACTGTGTGTATTTGTACGGTTTAACCCCTTTATCATCTCTTCGTCCTAGATTCTAAAATATGGAGTTACCAACTTTGTTTTTGTTTTGTCGGAGGAAAAACGATATTCAGTCAGGCCTATGGCTGGATCCTTTTAGATCTAGGGGCCGGCAGAACATGATAGAAGCGTTTCATTTATAAGGTATCGAAGATCATAGAAGTATTATTTAGGTAGCATTCAGTTGGAATTGAAGCTAGAATTAAATTCTTTATGCCAGGTATGGAGGCTGTAGGGGTTGTAACAGCTGTTGGTCCCGGATTGACTGGGAGGAAAGTTGGTGATATTGTTGCATATGCTGGTGGTGTGATGGGTGCATATGCTGAGGAACAGATCCTTCCTGCTGATAAAGTTGTGCCTGTTCCTCCCTCAATTGACCCCATTGTTGTAGCATCCATACTTCTCAAGGGCATGACTGCTCAGTTCCTACTGCGCCGCTGCTTCAAAGTATGTACATCATAATCTTACAGCAGCCGAGTTTCCTCTATTCTTTTTTTCCATCTGTTCCTTCTTTAGTTAAAGTAGACATGCTTATATTATAAACTAGATGATTTAGATTATCTAGTGCGGAAGAAGTCCTCAACTCTTACAAATTTACCAGTTTTAAAAAAGAAGTCCTCAACTCTGACATGGGCATGATTGAGTGTTTGTTTTATGATTTAGATGTTTTTCCCTACATGTTAATCAATGTGATCATATATAGGACAATTTAAGGGAAGATACAAAATATTTGATTGTCTCTTATTACTGGAAATTCAATCTTTAGATATTGACTGGAGTACTAATGGATGATTAGCAATTAGACGCATATCCCATGATTGAAGTTCCTTTATCCATACTCTCCTTTTTTAAGTAAATTAATCTATTTCTTGGTGATTCACAGCAGGTTGCTAGGTCCTATTGCTTTTGACTACTGCATCATGTGTTTCTCTTAGTTATTGCATGAGTAATTACAACTTGAAGAAGTAAACGTCATAGTCCCCAGTGATATGTCTTGAGAAAAACCAATACCGTTGCTTGTGATATTTGGTGTGTAATTTAGAAGTTGAGGGCTAGTAATCTGGATGCGCATATGGATCTTTTCCTCTTCTTCATTTTGAAGATTTCCAGCTTTTAAATTTCATATGATTGTTCTCTTGATAATGGAAGACTATGTGTCCTATCAGTGTTACAAAGCCATAAGCACCATCATTACTTCATTTTTGTCTCCAGGTATCGGGCAGATCTGTGTTCTGGATGGCTGTGCTCTTAAAATCTTGATATTCTCTGTACCAAAGCAACTTTGGGAAACTGTGAAATGGAAGATATTCTTTAATTTCCTGCTGGTTTAGTTGGTTGTTTGCAGCTAGTTAGTGAAGCAGATAAAACATCAGAAAATATAAAATATGACTAAATTGAATGCTTGAAAGCGCGAAGATTATGGAATACATTTTATTATGAGTGCATTGTCTTCCAGTTTCTACAAGGTTAAGCAGTTAACATAAAGTATCTCCGCTCTCTCCTGATCAGAATCAGGTTCCCCATAAATTGGATTCTTAGAGATTTACAGAATTACTTGGGAATCCCAAACCATGGGAAGGGGGACCAAAGGCTTCTAAACTAAATCTGGAGGTTAATGCAGTCCAGTTTGTAGAATAGTGTGCTATAATAAATACAACATGCTGAACATGAACCCGCTCTGCTTCCCAGATTGGTAATTTTAAGAGGGCTGAAAGGAAAAGAAATGACCTTTCTAGCCTCATTGTTTCTCAAAAAAAGAAGTGACCTTTCAATGGTTTTGGCATGTAATGTTTGTGCAACAAATTGCAATTTGCTGTCTTCTTGGAATTTCATCCATCCATTTCCTTTTCATTCAAACTTAATTCTTTTAAAATTCTTTTAATTGAATAGATTTTCCTCTCATTTGCATAAATTCAAACTAAGATATAGCTTCTTTACTTTCGTCAAATTTATACTGTCTTGCAATGTGTTACAGGTTGAACGTGGGCACGCAGTACTTGTTCATGCTGCAGCAGGT-GGGGTTGGCTCCCTATTGTGCCAATGGGCAAATGCCCTTGGTGCTACAGTCATTGGGACTGTATCAACTAAAGAGAAAGCAGCCCAAGCTAAAGATGAT-GGGTGTC-ATCATGTCATAATCTAT</genome_strand>
        <mrna_strand>AACTTCACTTCGTTGCTACAATCTTCTTCTACCTAATTCTTTCATTTCTCGCTTCACAAGAGCTATTACTACTAGTAATCAAAAAGGCCGCAAGTGTATTCCTTTACAAACAACTACTGTCAGATTAGCAGTAAGAGCTCACTCTGTATCACCAGCATCAATGGTCAAAGCCATTAGGGTTCATGAACTTGGTGGTCCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTCAAATGGGAGGACGTTGAACTGGGAGACCCAAAAGATGGAGAGATCAGGGTGAAGAATAAGGTCATTGGCCTCAACTTCATTGACATATATTTCCGGAAAGGAGTCTACAAAGCTGCTGCATTTCCCTTTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGAGGCTGTAGGGGTTGTAACAGCTGTTGGTCCCGGATTGACTGGGAGGAAAGTTGGTGATATTGTTGCATATGCTGGTGGTGTGATGGGTGCATATGCTGAGGAACAGATCCTTCCTGCTGATAAAGTTGTGCCTGTTCCTCCCTCAATTGACCCCATTGTTGTAGCATCCATACTTCTCAAGGGCATGACTGCTCAGTTCCTACTGCGCCGCTGCTTCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAACGTGGGCACGCAGTACTTGTTCATGCTGCAGCAGGTGGGGGTTGGCTCCCTATTGTGCCAATGGGCAAATGCCCTTGGTGCTACAGTCATTGGGACTGTATCAACTAAAGAGAAAGCAGCCCAAGCTAAAGATGATGGGGTGTCAATCATGTCATAATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700761" ref_strand="+" ref_description="SGN-E700761 [FA14AD06]">
      <seq>gctcactctgtatcaccagcatcaatggtcaaagccattagggttcatgaacttggtggtcctgaggtcctcaaatgggaggacgttgaactgggagacccaaaagatggagagatcagggtgaagaataaggtcattggcctcaacttcattgacatatatttccggaaaggagtctacaaagctgctgcatttccctttacaccaggtatggaggctgtaggggttgtaacagctgttggtcccggattgactgggaggaaagttggtgatattgttgcatatgctggtggtgtgatgggtgcatatgctgaggaacagatccttcctgctgataaagttgtgcctgttcctccctcaattgaccccattgttgtagcatccatacttctcaagggcatgactgctcagttcctactgcgccgctgcttcaaagttgaacgtgggcacgcagtacttgttcatgctgcagcaggtggggttggctccctattgtgccaatgggcaaatgcccttggtgctacagtcattgggactgtatcaactaaagagaaagcagcccaagctaaagatgatgggtgtcatcatgtcataatctataaggaagaggatttcgtcactcgtgtcaatgagatcacatctggccaaggagttgaagttgtgtatgattctgttggaaaagatacttttcagggatcattagactgcttaaaaactcgtggatacatggtgagttttgggcagtcatctggctcaccagatccagtacctttatcagctcttgcagtgaaatcgctatttctgacnagggctagcatgatgcactacacaatgacgagggatgaactactagaaactgccggagaggtatttgctaatgtggcatcaggtgtcttacgcgtccgtgtgaatcatactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4307" stop="11916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4607" g_stop="4672" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4673" i_stop="7976" i_length="3304">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7977" g_stop="8118" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="208" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8119" i_stop="8993" i_length="875">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8994" g_stop="9220" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="435" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9221" i_stop="10748" i_length="1528">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10749" g_stop="11006" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="693" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11007" i_stop="11389" i_length="383">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11390" g_stop="11616" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="920" r_length="227" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E700761" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>920</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4607" e_stop="4672"/>
          <exon e_start="7977" e_stop="8118"/>
          <exon e_start="8994" e_stop="9220"/>
          <exon e_start="10749" e_stop="11006"/>
          <exon e_start="11390" e_stop="11616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCACTCTGTATCACCAGCATCAATGGTCAAAGCCATTAGGGTTCATGAACTTGGTGGTCCTGAGGTCTATTTCTTATCTCTCTCTCTATATATTAAAATTTGTTATATTATCAAAATAAGAAGAAGAATCAAATGCTAATGGTTTTTAATCTGGATGATCATGATTACATTATGCTGAATTAAAAATTCAATCTTTGCAAAAATTAGTTGAGGTGGCTGAAAGTTGGCCGGGACACCACAGTCGTAAAACGAAAGGTTGCATGTACAATAACATTTATATAATTAGATTTAAAGAGTATTAACTCTCAAAGAAGTTACTTTTGTTATAGATTTGGGAGTTGTCATCTATCTAGTTAGTAAGATGTTGAAAAGAGTAGGAGAAGGGATCATTTCCACTTGAAGAGGCTTGTTTGAATAAGAAGTTGGACACTTGATTGGCTTCCCTAAAAGTGTGAAATCTTCATATTTGCACCATTTATATCTTTGAAGATGTCTCTGATACCTTTGAGTTTGTGATAATTAATGATCTTGTTATTGATCATGTCAGTAATCTTTAAGGAGTCCAATTCAAGGTCATGAGTTTTGAATCTAGCCTGTTTGTACCAGTTAGCATCATACATAGTGGCCATTGCCTCTGTCTGATTGTTGCTTTTATATTGAATGGAACTGAAATGGGCATGATCAGGCTGTCAGAATCATTCCTCACCGTGCCACCAATACGTGTTGTGTTATATTGCTGGGTGTAGTTTCCATTACCATCAGTGTTAACTTCAATCCTTCCAAGCATTGGTTTGGTCCAAGTACAGACACCTGATGACTGATCTGAATATTTCAATTCCTTGACATAGTTTTATTTTTTTATTTTTTTCATAGAGTAACTTTGTATTCATATGAAAACAATCATCCAAAAGTGATGAGATGTTAGTTACAAGTTACAACCCTCACTGGACATTGCAAGAAAGAGACAGCCCCCAAAACACCTTGCATTTCTTTCCTTCCATAAGATCCACCAAATAAAGTCTGGAATCAGTTTCCACCAGTCTTCCTCAGAAATTCTTCTTCGAATTGTCTCCCAGCTCCTCAGCAAATCAGAAGTGTTCTAAGGAATTGTCCATCTTAACTCCAAGCATATATAAGAACATTCTAAGGAATTGTCCAGCTTAACTCCAAGCATATATAAGAACAGGCTCCGCAGATTTACAATTGTTATGCAGTGTATGGACTAGGAAGAGGTGGTTGTCTACCTCTGCTTCCTTGTCACAAAGAAAACACCTTGAGCCTTTTCTATATAGTGCTTCATGGGTTAGGCAACTTCTTCTATGTCAATTCTTTGACATAGTTGAGTTCAGTTGCCTGAAATATCACAGCTAGGAAATGCCACTGATATGTCTGTCTTTTTGTTCCATAGGTTATGCATTTCCTTATTGGAAGTAACAAATCTTTTCTGGTTACCATATTCACAAGAAGTCCACCATATTCATAAGAAGTCCAGCTCCTCCAAATTTCCCAACAACAACATACCCACTGCAATCATACTTCCTCCAAATTTCCCAACAAATACAAATAGGAACTATTTGTTGAATCAGTTATTGATAGTCTAAACATCCCACCACATATTGAAAATTCCTTTACAGCACAAGAGTGATGTCTAACTCCCAGAGGATTACCAAAGAAGTTCCAAACATAACAAGCAGCCTCACCATCAATAAAAACATGATTCATTGTATCACAAGTAGGTTTAGCACAACAAAAGCATCTAGAGACTGATTGTTTATCAACATTATGGAGAATCTCATCGAAAGGTAATTTTAAGAATCAATCTCCAAGTAAGAAATGAAACTTTAAAAGGCAAACATTTATGCCATACCTTGTCAAGAGTGATGTCCTTCTGCCTATGTTGTCTGATGATTTGCCATGCTGACAAAGTGCAAGAGGCCACTGTGCAAGAGGTTTGGTCCATTCATGGATGGAACTTAACATATAGAATGATGATACAAGACTGGGAGGTGGATAGACTAGCTGAATTTTATGGCACCTCGGACCATTTTCGAGGATTGGAAGAGGGAGAAGACACTCTTAGGTGGATTCATCATAGCAAAGGTGTCTTCATAGTTAGCTCTGCCTACAAGAACCTGAATCAAATGGGGACTCAACTCAGATTTTTGCCTTGGAAGCTTATCTGGAAAGTCAAAATTCCATATAAGGTGGTAGTTTTTACTTGGTTGGTAGTTAAAGAGGCGGTACTAACACAGGAAAATCTAATGAAGAGGGGAATACATGTGTGTCCTAGATATTTTTTTTTTGTGAGCAACAGGCAGAGACAATCAACCATTTGTTTATTCATTGCAAGGTGGTTAGACAACTGTGGCACTTATTTACCATATTCAGGGGCACAAACTGGACCATGCCACAAAGGGCAAGTCAGGCTATAGAAAGCTGGAACAATGAAGGCAGTGGTAGTACAGACCAAAGCAAATGGAGAATTGTCCCAACAGTGATTTGGTAGACCATATGGAAGGAGAGGAATATGAGATGCTTTGAGAGTGTTAGTAGTCCTTTACGCAGGATTAAAATGAACTGCACAATCACTTTTTGCTATTGGTGCATTTTGGAGTATGTAGATGATCCTATAGCTGTTAGAGATATCCTAGGTCCTTTGTTGATGAAGTAGGAGCTAGTTTAGTTTTGTGTAAGTACACGCAACTGTATGTAGTTCCATGATGTAAATATGGGACCCCAGCCTTTAGTGCTGAAGATTAATACACAGTACTGTTACCGTTGTCAAAAAAAAAAGTCATGACTTTCTTGATCTCCAATGGGAATCCCCCCCCCCTCCGGCCCCATGCTGCAACAACCATCATCGATATTCCAAAGAATGTCTTTTTCAGTGTTCTCCCTAGCTTTAGTTAGAGATTTACATACCTGAGAGGTTCCACTTGTCCATGCCTTGGACACTGGATGAACCCTATTGCAATATTTGGCCCTCATGAAATCAGCCATAAAGAAGGCTGAGTCCTGAACTTCCACCATCTTTTGATGGCTAAGGTGTTGGAGATGTCATTCATGTTTCTGATAACAATATCACCCTCATCTTTAGGAAAACACAAGTTATTCTAAGATCTCCAGTGATATTTTGCTTTGTAATCATTGGATCTGCTGTCACATTCACGTTCGTAAATTAGAATCTTAATTGATGGGTCTTTCAATTCTTTGGACACAATACTAAATTTTAGTGTGATAAATTCTATGTTCGCTTTTTTGTGTTTAGAGGAAGCAGGAGAATAAATATTAATGGCAGCCTACTTTTTTAATTTGCATCAACAGAAATTTATTAACCAGTTATTTACAACAAGCCTATTGTTTTGTAGGTCCTCAAATGGGAGGACGTTGAACTGGGAGACCCAAAAGATGGAGAGATCAGGGTGAAGAATAAGGTCATTGGCCTCAACTTCATTGACATATATTTCCGGAAAGGAGTCTACAAAGCTGCTGCATTTCCCTTTACACCAGGTGCTTTCAATCCCCTCTCTCAATTATTTTCTATTCTTCTACATGTTTACGAACATTTCAAGTATAATATGATCCTATTTTAAAGAAGATTCTATTGGAGCCCGCTGGTTTTAGGCATCCTGTAACTTGAATATCTTCTGCTGGTTATGATTAGCTTTGGAACTGCATCATATGCAAAAAGAAAAGCCTGCATCTGCTTCGGCATGAATATCTCAACCAAACATGGGATGCTTTGTTATTTGAAAGTTAAATCGGTTTTCTCTATGTGGAGGACCGGAGGTTTGCCCTATTCGGGAAGCTCCAGATCTATGCTTAGTTTCAACTCCCTAAAGCTCATCGTTGATTACTATCTCCTTCCACTCAAGCCTATTATCCACTTTAATACTAGTTTTAAGTACTGAAAATCTGCCATTTAGCAATGATTCACAATGCAGTAGACTAAAGAGGTGAAGTAAATTAGATGCGTAAAGATTCTGCTTTACTGCAAGTCTGATCCATATACTTATCCAACCAAATAAATAGGGGGGATTGTGTACTTCTCATCATCACAATCGACACTTAATTAGTGAGGTTCTTGTTTTTTCTAGAGAGTATTTGTTTTTTGTGTATCAAGTTATCAACTGTGTGTATTTGTACGGTTTAACCCCTTTATCATCTCTTCGTCCTAGATTCTAAAATATGGAGTTACCAACTTTGTTTTTGTTTTGTCGGAGGAAAAACGATATTCAGTCAGGCCTATGGCTGGATCCTTTTAGATCTAGGGGCCGGCAGAACATGATAGAAGCGTTTCATTTATAAGGTATCGAAGATCATAGAAGTATTATTTAGGTAGCATTCAGTTGGAATTGAAGCTAGAATTAAATTCTTTATGCCAGGTATGGAGGCTGTAGGGGTTGTAACAGCTGTTGGTCCCGGATTGACTGGGAGGAAAGTTGGTGATATTGTTGCATATGCTGGTGGTGTGATGGGTGCATATGCTGAGGAACAGATCCTTCCTGCTGATAAAGTTGTGCCTGTTCCTCCCTCAATTGACCCCATTGTTGTAGCATCCATACTTCTCAAGGGCATGACTGCTCAGTTCCTACTGCGCCGCTGCTTCAAAGTATGTACATCATAATCTTACAGCAGCCGAGTTTCCTCTATTCTTTTTTTCCATCTGTTCCTTCTTTAGTTAAAGTAGACATGCTTATATTATAAACTAGATGATTTAGATTATCTAGTGCGGAAGAAGTCCTCAACTCTTACAAATTTACCAGTTTTAAAAAAGAAGTCCTCAACTCTGACATGGGCATGATTGAGTGTTTGTTTTATGATTTAGATGTTTTTCCCTACATGTTAATCAATGTGATCATATATAGGACAATTTAAGGGAAGATACAAAATATTTGATTGTCTCTTATTACTGGAAATTCAATCTTTAGATATTGACTGGAGTACTAATGGATGATTAGCAATTAGACGCATATCCCATGATTGAAGTTCCTTTATCCATACTCTCCTTTTTTAAGTAAATTAATCTATTTCTTGGTGATTCACAGCAGGTTGCTAGGTCCTATTGCTTTTGACTACTGCATCATGTGTTTCTCTTAGTTATTGCATGAGTAATTACAACTTGAAGAAGTAAACGTCATAGTCCCCAGTGATATGTCTTGAGAAAAACCAATACCGTTGCTTGTGATATTTGGTGTGTAATTTAGAAGTTGAGGGCTAGTAATCTGGATGCGCATATGGATCTTTTCCTCTTCTTCATTTTGAAGATTTCCAGCTTTTAAATTTCATATGATTGTTCTCTTGATAATGGAAGACTATGTGTCCTATCAGTGTTACAAAGCCATAAGCACCATCATTACTTCATTTTTGTCTCCAGGTATCGGGCAGATCTGTGTTCTGGATGGCTGTGCTCTTAAAATCTTGATATTCTCTGTACCAAAGCAACTTTGGGAAACTGTGAAATGGAAGATATTCTTTAATTTCCTGCTGGTTTAGTTGGTTGTTTGCAGCTAGTTAGTGAAGCAGATAAAACATCAGAAAATATAAAATATGACTAAATTGAATGCTTGAAAGCGCGAAGATTATGGAATACATTTTATTATGAGTGCATTGTCTTCCAGTTTCTACAAGGTTAAGCAGTTAACATAAAGTATCTCCGCTCTCTCCTGATCAGAATCAGGTTCCCCATAAATTGGATTCTTAGAGATTTACAGAATTACTTGGGAATCCCAAACCATGGGAAGGGGGACCAAAGGCTTCTAAACTAAATCTGGAGGTTAATGCAGTCCAGTTTGTAGAATAGTGTGCTATAATAAATACAACATGCTGAACATGAACCCGCTCTGCTTCCCAGATTGGTAATTTTAAGAGGGCTGAAAGGAAAAGAAATGACCTTTCTAGCCTCATTGTTTCTCAAAAAAAGAAGTGACCTTTCAATGGTTTTGGCATGTAATGTTTGTGCAACAAATTGCAATTTGCTGTCTTCTTGGAATTTCATCCATCCATTTCCTTTTCATTCAAACTTAATTCTTTTAAAATTCTTTTAATTGAATAGATTTTCCTCTCATTTGCATAAATTCAAACTAAGATATAGCTTCTTTACTTTCGTCAAATTTATACTGTCTTGCAATGTGTTACAGGTTGAACGTGGGCACGCAGTACTTGTTCATGCTGCAGCAGGTGGGGTTGGCTCCCTATTGTGCCAATGGGCAAATGCCCTTGGTGCTACAGTCATTGGGACTGTATCAACTAAAGAGAAAGCAGCCCAAGCTAAAGATGATGGGTGTCATCATGTCATAATCTATAAGGAAGAGGATTTCGTCACTCGTGTCAATGAGATCACATCTGGCCAAGGAGTTGAAGTTGTGTATGATTCTGTTGGAAAAGATACTTTTCAGGTATTGGTATTTACATTCATTCATTCTTTATCGACCAAGTTAGCCTAAATTCACAGAAAAGCTTTCAGAAAAGCAACACTTTCATCAGAATGGTGAAGTTTGTTCATGTAGGTTGGGGTTTAGTTTAACAAAATCCCTTTTAACTGTTGGAGATTGAAATTATTTTAAAACAATCATAACTTGCCAAATCATTAATGATTAACGGCGAACTAGCAATAAACCAACTATCCAGGGGAAATTTAATGCAACATCTTTAGCCTGTAGGAAAATGAACAAGAAAACTATGATGGGACAATACTTGGGTGACCAGGATTAAAAAGAATTTATTGTGCTTATTAAGTCCTGTTCCTATGTAGCCTTTGATTAGAAATTTTTTTGATCAGGGATCATTAGACTGCTTAAAAACTCGTGGATACATGGTGAGTTTTGGGCAGTCATCTGGCTCACCAGATCCAGTACCTTTATCAGCTCTTGCAGTGAAATCGCTATTTCTGACAAGGCCTAGCATGATGCACTACACAATGACGAGGGATGAACTACTAGAAACTGCCGGAGAGGTATTTGCTAATGTGGCATCAGGTGTCTTACGCGTCCGTGTGAATCATACTTA</genome_strand>
        <mrna_strand>GCTCACTCTGTATCACCAGCATCAATGGTCAAAGCCATTAGGGTTCATGAACTTGGTGGTCCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTCAAATGGGAGGACGTTGAACTGGGAGACCCAAAAGATGGAGAGATCAGGGTGAAGAATAAGGTCATTGGCCTCAACTTCATTGACATATATTTCCGGAAAGGAGTCTACAAAGCTGCTGCATTTCCCTTTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGAGGCTGTAGGGGTTGTAACAGCTGTTGGTCCCGGATTGACTGGGAGGAAAGTTGGTGATATTGTTGCATATGCTGGTGGTGTGATGGGTGCATATGCTGAGGAACAGATCCTTCCTGCTGATAAAGTTGTGCCTGTTCCTCCCTCAATTGACCCCATTGTTGTAGCATCCATACTTCTCAAGGGCATGACTGCTCAGTTCCTACTGCGCCGCTGCTTCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAACGTGGGCACGCAGTACTTGTTCATGCTGCAGCAGGTGGGGTTGGCTCCCTATTGTGCCAATGGGCAAATGCCCTTGGTGCTACAGTCATTGGGACTGTATCAACTAAAGAGAAAGCAGCCCAAGCTAAAGATGATGGGTGTCATCATGTCATAATCTATAAGGAAGAGGATTTCGTCACTCGTGTCAATGAGATCACATCTGGCCAAGGAGTTGAAGTTGTGTATGATTCTGTTGGAAAAGATACTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................GGATCATTAGACTGCTTAAAAACTCGTGGATACATGGTGAGTTTTGGGCAGTCATCTGGCTCACCAGATCCAGTACCTTTATCAGCTCTTGCAGTGAAATCGCTATTTCTGACNAGGGCTAGCATGATGCACTACACAATGACGAGGGATGAACTACTAGAAACTGCCGGAGAGGTATTTGCTAATGTGGCATCAGGTGTCTTACGCGTCCGTGTGAATCATACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701429" ref_strand="+" ref_description="SGN-E701429 [FA15DG10]">
      <seq>ctgttatttagcaatgattcacaatgcagtagactaaagaggtgaagtaaattagatgcgtaaagattctgctttactgcaagtctgatccatatacttatccaaccaaataaataggggggattgtgtacttctcatcatcacaatcgacacttaattagtgaggttcttgttttttctagagagtatttgttttttgtgtatcaagttatcaactgtgtgtatttgtacggtttaacccctttatcatctcttcgtcctagattctaaaatatggagttaccaactttgtttttgttttgtcggaggaaaaacgatattcagtcaggcctatggctggatccttttagatctaggggccggcagaacatgatagaagcgtttcatttataaggtatcgaagatcatagaagtattatttaggtagcattcagttggaattgaagctagaattaaattctttatgccaggtatggaggctgtaggggttgtaacagctgttggtcccggattgactgggaggaaagttggtgatattgttgcatatgctggtggtgtgatgggtgcatatgctgaggaacagatccttcctgctgataaagttgtgcctgttcctccctcaattgaccccattgttgtagcatccatacttctcaagggcatgactgctcagttcctactgcgccgctgcttcaaagttgaacgtgggcacgcagtacttgttcatgctgcagcaggtggggttggctccctattgtgccaatgggcaaatgcccttggtgctacagtcattgggactgtatcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8224" stop="11159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8524" g_stop="9220" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9221" i_stop="10748" i_length="1528">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10749" g_stop="10859" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="808" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E701429" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8524" e_stop="9220"/>
          <exon e_start="10749" e_stop="10859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCATTTAGCAATGATTCACAATGCAGTAGACTAAAGAGGTGAAGTAAATTAGATGCGTAAAGATTCTGCTTTACTGCAAGTCTGATCCATATACTTATCCAACCAAATAAATAGGGGGGATTGTGTACTTCTCATCATCACAATCGACACTTAATTAGTGAGGTTCTTGTTTTTTCTAGAGAGTATTTGTTTTTTGTGTATCAAGTTATCAACTGTGTGTATTTGTACGGTTTAACCCCTTTATCATCTCTTCGTCCTAGATTCTAAAATATGGAGTTACCAACTTTGTTTTTGTTTTGTCGGAGGAAAAACGATATTCAGTCAGGCCTATGGCTGGATCCTTTTAGATCTAGGGGCCGGCAGAACATGATAGAAGCGTTTCATTTATAAGGTATCGAAGATCATAGAAGTATTATTTAGGTAGCATTCAGTTGGAATTGAAGCTAGAATTAAATTCTTTATGCCAGGTATGGAGGCTGTAGGGGTTGTAACAGCTGTTGGTCCCGGATTGACTGGGAGGAAAGTTGGTGATATTGTTGCATATGCTGGTGGTGTGATGGGTGCATATGCTGAGGAACAGATCCTTCCTGCTGATAAAGTTGTGCCTGTTCCTCCCTCAATTGACCCCATTGTTGTAGCATCCATACTTCTCAAGGGCATGACTGCTCAGTTCCTACTGCGCCGCTGCTTCAAAGTATGTACATCATAATCTTACAGCAGCCGAGTTTCCTCTATTCTTTTTTTCCATCTGTTCCTTCTTTAGTTAAAGTAGACATGCTTATATTATAAACTAGATGATTTAGATTATCTAGTGCGGAAGAAGTCCTCAACTCTTACAAATTTACCAGTTTTAAAAAAGAAGTCCTCAACTCTGACATGGGCATGATTGAGTGTTTGTTTTATGATTTAGATGTTTTTCCCTACATGTTAATCAATGTGATCATATATAGGACAATTTAAGGGAAGATACAAAATATTTGATTGTCTCTTATTACTGGAAATTCAATCTTTAGATATTGACTGGAGTACTAATGGATGATTAGCAATTAGACGCATATCCCATGATTGAAGTTCCTTTATCCATACTCTCCTTTTTTAAGTAAATTAATCTATTTCTTGGTGATTCACAGCAGGTTGCTAGGTCCTATTGCTTTTGACTACTGCATCATGTGTTTCTCTTAGTTATTGCATGAGTAATTACAACTTGAAGAAGTAAACGTCATAGTCCCCAGTGATATGTCTTGAGAAAAACCAATACCGTTGCTTGTGATATTTGGTGTGTAATTTAGAAGTTGAGGGCTAGTAATCTGGATGCGCATATGGATCTTTTCCTCTTCTTCATTTTGAAGATTTCCAGCTTTTAAATTTCATATGATTGTTCTCTTGATAATGGAAGACTATGTGTCCTATCAGTGTTACAAAGCCATAAGCACCATCATTACTTCATTTTTGTCTCCAGGTATCGGGCAGATCTGTGTTCTGGATGGCTGTGCTCTTAAAATCTTGATATTCTCTGTACCAAAGCAACTTTGGGAAACTGTGAAATGGAAGATATTCTTTAATTTCCTGCTGGTTTAGTTGGTTGTTTGCAGCTAGTTAGTGAAGCAGATAAAACATCAGAAAATATAAAATATGACTAAATTGAATGCTTGAAAGCGCGAAGATTATGGAATACATTTTATTATGAGTGCATTGTCTTCCAGTTTCTACAAGGTTAAGCAGTTAACATAAAGTATCTCCGCTCTCTCCTGATCAGAATCAGGTTCCCCATAAATTGGATTCTTAGAGATTTACAGAATTACTTGGGAATCCCAAACCATGGGAAGGGGGACCAAAGGCTTCTAAACTAAATCTGGAGGTTAATGCAGTCCAGTTTGTAGAATAGTGTGCTATAATAAATACAACATGCTGAACATGAACCCGCTCTGCTTCCCAGATTGGTAATTTTAAGAGGGCTGAAAGGAAAAGAAATGACCTTTCTAGCCTCATTGTTTCTCAAAAAAAGAAGTGACCTTTCAATGGTTTTGGCATGTAATGTTTGTGCAACAAATTGCAATTTGCTGTCTTCTTGGAATTTCATCCATCCATTTCCTTTTCATTCAAACTTAATTCTTTTAAAATTCTTTTAATTGAATAGATTTTCCTCTCATTTGCATAAATTCAAACTAAGATATAGCTTCTTTACTTTCGTCAAATTTATACTGTCTTGCAATGTGTTACAGGTTGAACGTGGGCACGCAGTACTTGTTCATGCTGCAGCAGGTGGGGTTGGCTCCCTATTGTGCCAATGGGCAAATGCCCTTGGTGCTACAGTCATTGGGACTGTATCAACT</genome_strand>
        <mrna_strand>CTGTTATTTAGCAATGATTCACAATGCAGTAGACTAAAGAGGTGAAGTAAATTAGATGCGTAAAGATTCTGCTTTACTGCAAGTCTGATCCATATACTTATCCAACCAAATAAATAGGGGGGATTGTGTACTTCTCATCATCACAATCGACACTTAATTAGTGAGGTTCTTGTTTTTTCTAGAGAGTATTTGTTTTTTGTGTATCAAGTTATCAACTGTGTGTATTTGTACGGTTTAACCCCTTTATCATCTCTTCGTCCTAGATTCTAAAATATGGAGTTACCAACTTTGTTTTTGTTTTGTCGGAGGAAAAACGATATTCAGTCAGGCCTATGGCTGGATCCTTTTAGATCTAGGGGCCGGCAGAACATGATAGAAGCGTTTCATTTATAAGGTATCGAAGATCATAGAAGTATTATTTAGGTAGCATTCAGTTGGAATTGAAGCTAGAATTAAATTCTTTATGCCAGGTATGGAGGCTGTAGGGGTTGTAACAGCTGTTGGTCCCGGATTGACTGGGAGGAAAGTTGGTGATATTGTTGCATATGCTGGTGGTGTGATGGGTGCATATGCTGAGGAACAGATCCTTCCTGCTGATAAAGTTGTGCCTGTTCCTCCCTCAATTGACCCCATTGTTGTAGCATCCATACTTCTCAAGGGCATGACTGCTCAGTTCCTACTGCGCCGCTGCTTCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAACGTGGGCACGCAGTACTTGTTCATGCTGCAGCAGGTGGGGTTGGCTCCCTATTGTGCCAATGGGCAAATGCCCTTGGTGCTACAGTCATTGGGACTGTATCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290194" ref_strand="+" ref_description="SGN-E290194 [cLET-5-A4]">
      <seq>ctggccaaggagttgaagttgtgtatgattctgttggaaaagatacttttcagggatcattagactgcttaaaaactcgtggatacatggtgagttttgggcagtcatctggctcaccagatccaatacctttatcagctcttgcagtgaaatcgctatttctgacaaggcctagcatgatgcactacacaatgacgagggatgaactactagaaactgccggagaggtatttgctaatgtggcatcaggtgtcttacgcgtccgtgtgaatcatacttatcccctgtctcaggcggcacaagcacataccgaccttgagagcaggaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10654" stop="11967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10954" g_stop="11006" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11007" i_stop="11389" i_length="383">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11390" g_stop="11667" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="331" r_length="278" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E290194" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10954" e_stop="11006"/>
          <exon e_start="11390" e_stop="11667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCCAAGGAGTTGAAGTTGTGTATGATTCTGTTGGAAAAGATACTTTTCAGGTATTGGTATTTACATTCATTCATTCTTTATCGACCAAGTTAGCCTAAATTCACAGAAAAGCTTTCAGAAAAGCAACACTTTCATCAGAATGGTGAAGTTTGTTCATGTAGGTTGGGGTTTAGTTTAACAAAATCCCTTTTAACTGTTGGAGATTGAAATTATTTTAAAACAATCATAACTTGCCAAATCATTAATGATTAACGGCGAACTAGCAATAAACCAACTATCCAGGGGAAATTTAATGCAACATCTTTAGCCTGTAGGAAAATGAACAAGAAAACTATGATGGGACAATACTTGGGTGACCAGGATTAAAAAGAATTTATTGTGCTTATTAAGTCCTGTTCCTATGTAGCCTTTGATTAGAAATTTTTTTGATCAGGGATCATTAGACTGCTTAAAAACTCGTGGATACATGGTGAGTTTTGGGCAGTCATCTGGCTCACCAGATCCAGTACCTTTATCAGCTCTTGCAGTGAAATCGCTATTTCTGACAAGGCCTAGCATGATGCACTACACAATGACGAGGGATGAACTACTAGAAACTGCCGGAGAGGTATTTGCTAATGTGGCATCAGGTGTCTTACGCGTCCGTGTGAATCATACTTATCCCCTGTCTCAGGCGGCACAAGCACATACCGACCTTGAGAGCAGGAAAAC</genome_strand>
        <mrna_strand>CTGGCCAAGGAGTTGAAGTTGTGTATGATTCTGTTGGAAAAGATACTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................GGATCATTAGACTGCTTAAAAACTCGTGGATACATGGTGAGTTTTGGGCAGTCATCTGGCTCACCAGATCCAATACCTTTATCAGCTCTTGCAGTGAAATCGCTATTTCTGACAAGGCCTAGCATGATGCACTACACAATGACGAGGGATGAACTACTAGAAACTGCCGGAGAGGTATTTGCTAATGTGGCATCAGGTGTCTTACGCGTCCGTGTGAATCATACTTATCCCCTGTCTCAGGCGGCACAAGCACATACCGACCTTGAGAGCAGGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240420" ref_strand="+" ref_description="SGN-E240420 [cLED-25-B14]">
      <seq>ttgttctctccatgtaaatcaagattttttttaatttcattgttaatctttatattattgtaggatcgaatttattttgtggcataactcaacgaagaaggctcttgaatgttagtttgccaaaagggatgtcggataagagtaacaaaaattgtgcattgattatacattattatttttatgtattttcttatgattaaggtcctaaggaactaagaaagatagatgtgttgtgtgttctctccatgtaactcaagattatttttttaatttcattggtaatatttataaatattattattattataggatcacattcatcttttagcataactagatgaagaagacttttaaatgttgattagtctgtcgaaaaggatgttggacaaaagttcaaaaaaactgtgcatcgatctatatttcaatttttcatttattttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="-" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30504" stop="29462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30204" g_stop="29762" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="-" ref_id="SGN-E240420" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30204" e_stop="29762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCTCTCCATGTAAATCAAGATTTTTTTTAATTTCATTGTTAATCTTTATATTATTGTAGGATCGAATTTATTTTGTGGCATAACTCAACGAAGAAGGCTCTTGAATGTTAGTTTGCCAAAAGGGATGTCGGATAAGAGTAACAAAAATTGTGCATTGATTATACATTATTATTTTTATGTATTTTCTTATGATTAAGGTCCTAAGGAACTAAGAAAGATAGATGTGTTGTGTGTTCTCTCCATGTAACTCAAGATTATTTTTTTAATTTCATTGTTAATATTTATAAATATTATTATTATTATAGGATCACATTCATCTTTTAGCATAACTAGATGAAGAAGACTTTTAAATGTTGATTAGTCTGTCGAAAAGGATGTTGGACAAAAGTTCAAAAAAACTGTGCATCGATCTATATTTCAATTTTTCATTTATTTTCTT</genome_strand>
        <mrna_strand>TTGTTCTCTCCATGTAAATCAAGATTTTTTTTAATTTCATTGTTAATCTTTATATTATTGTAGGATCGAATTTATTTTGTGGCATAACTCAACGAAGAAGGCTCTTGAATGTTAGTTTGCCAAAAGGGATGTCGGATAAGAGTAACAAAAATTGTGCATTGATTATACATTATTATTTTTATGTATTTTCTTATGATTAAGGTCCTAAGGAACTAAGAAAGATAGATGTGTTGTGTGTTCTCTCCATGTAACTCAAGATTATTTTTTTAATTTCATTGGTAATATTTATAAATATTATTATTATTATAGGATCACATTCATCTTTTAGCATAACTAGATGAAGAAGACTTTTAAATGTTGATTAGTCTGTCGAAAAGGATGTTGGACAAAAGTTCAAAAAAACTGTGCATCGATCTATATTTCAATTTTTCATTTATTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577891" ref_strand="+" ref_description="SGN-E577891 [LE08BA04]">
      <seq>ttcgtttcaaaatacttcagctcttggaatctgggtactggaatcacttctctgatcttcacgacgaacctgcaggacggaccgtcatagccatgacggaccgtcacaatcttcgtaatcccacacttggtgagacttccccatcttccttcagcagcttctctacgctgccacctacggagcgtcaaaggcacgatggaccgtcataagctcagtaggtggtctcttctacattttttcgctcaaaatctctgctttcagctttggacagatttcctgcaaaataaagagaaacttataccaaaattagcacaaaaaggcttacggacacactaaacttaaggcaaaagtattaattataccgtgaaaccacggtatatcagggacatgaactcgaaggccattgttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53010" stop="53992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53310" g_stop="53691" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E577891" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53310" e_stop="53691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTTCAAAATACTTCAACTTTTGGAATCTGGGTACTGGGATAACTTTTCTGATCTTCACGACGAACCTGCAGGACAGACCGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTATGCTGCCACCTACGGACCGTCACAGGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTTCTGCAAAACAAAGAGAAACTTATATCAAAATTAGCACAAAAAGGCTTTCTGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAACCATGGTATATCA</genome_strand>
        <mrna_strand>TTCGTTTCAAAATACTTCAGCTCTTGGAATCTGGGTACTGGAATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAATCTTCGTAATCCCACACTTGGTGAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGAGCGTCAAAGGCACGATGGACCGTCATAAGCTCAGTAGGTGGTCTCTTCTACATTTTTTCGCTCAAAATCTCTGCTTTCAGCTTTGGACAGATTTCCTGCAAAATAAAGAGAAACTTATACCAAAATTAGCACAAAAAGGCTTACGGACACACTAAACTTAAGGCAAAAGTATTAATTATACCGTGAAACCACGGTATATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64717" stop="65799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64947" g_stop="65499" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64947" e_stop="65499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGGTACTAGGGTGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGA-AGGGAAAATGAGCAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATTAACCAGGTTCTTGCCTATCTTAGCGGGTTATCTGATCAAGGCCAAACACCTCCAGTGTTTTCTGCACCAGCACCTAATGTTCTGGAGGTACAACATGCAGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGGTTGACTACAGAGCCTATAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGTTATTACATAAAATGGGCATAGTGAAACGATTTGGTGTTGAGTTTGTAACCTATCAGTTTCAGGGAAATGCCAAAATGTGGTAGCGGTCACATGTTGAGTGTCAACCCGCACAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="-" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66933" stop="66003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66633" g_stop="66303" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66633" e_stop="66303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCCAACGTTACAGTTTTAGCATTACAATCCAGAATTGCAAAAATTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAATCAACCATTTCTAAGGTAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACCTTTTCAACTATCACAGACTCACCCACTGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCGCAAGGTAAATTAAGACCAGTAGCAAATGAAGAAGATACATATGAAAATGTGGATCCAGGATCAAAAAATACGGATGCCATGCAATCGCAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66033" stop="67293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66333" g_stop="66993" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66333" e_stop="66993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGATCCACATTTTCATATGTATCTTCTTCATTTGCTACTGGTCTTAATTTACCTTGCGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCAGTGGGTGAGTCTGTGATAGTTGAAAAGGTATATAGGTCTGGTCTGGTGACTTTTGTGGGGAGCAATACTTATGTAGACTTGGTTACCTTAGAAATGGTTGATTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAATTTTTGCAATTCTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGGGACAGATCCTTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCATATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGGAAGGGTTGTTTAGATTTCTTGGCACACCTCAGGGACGATACTACCCAAGTACCTTCAATGGAGTCTGTTTCGATAGTCCGCGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTAGAGCCGGGTACTCGCCCCATTTCCATACCCCCTTATAGGATGGCTCCCGCTGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTTTTAAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352950" ref_strand="+" ref_description="SGN-E352950 [cTOS-14-C13]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="-" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68739" stop="67553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68439" g_stop="67853" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="-" ref_id="SGN-E352950" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68439" e_stop="67853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTATAAGAATAGTGCGAATCAAATCATCGACGCGGGGTACACATACTCTTCCCTTAATTCTCAAAACATCTTCCTCATCGATTTTTGCTTCTTTAGCCTCTCCTCGCAATATCTTATCTCGGATCCGGGTCAGTTTCTCATCAGTGAATTGCTTTCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTATCCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATTGGCATTTGGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCTTTTCCCGGATGATATAATATAGTTATATCATAGTCCTTCAGTAGTTCCATCCATCTCCTCTGCCTTAGATTTAAATCTTTCTGAGTAAAGACATACTGTAGGCTACGATGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACCGCCGCTAACTCCAAATCATGGGTCGGATAATTACCTTCATGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357100" ref_strand="+" ref_description="SGN-E357100 [cTOS-22-N3]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="-" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68739" stop="67553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68439" g_stop="67853" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="-" ref_id="SGN-E357100" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68439" e_stop="67853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTATAAGAATAGTGCGAATCAAATCATCGACGCGGGGTACACATACTCTTCCCTTAATTCTCAAAACATCTTCCTCATCGATTTTTGCTTCTTTAGCCTCTCCTCGCAATATCTTATCTCGGATCCGGGTCAGTTTCTCATCAGTGAATTGCTTTCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTATCCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATTGGCATTTGGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCTTTTCCCGGATGATATAATATAGTTATATCATAGTCCTTCAGTAGTTCCATCCATCTCCTCTGCCTTAGATTTAAATCTTTCTGAGTAAAGACATACTGTAGGCTACGATGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACCGCCGCTAACTCCAAATCATGGGTCGGATAATTACCTTCATGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352647" ref_strand="+" ref_description="SGN-E352647 [cTOS-11-I7]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaacccatagagataatggctctattactttaatgcaatcactactgccgctaactccaaatcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="-" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68739" stop="67586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68439" g_stop="67886" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="-" ref_id="SGN-E352647" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68439" e_stop="67886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTATAAGAATAGTGCGAATCAAATCATCGACGCGGGGTACACATACTCTTCCCTTAATTCTCAAAACATCTTCCTCATCGATTTTTGCTTCTTTAGCCTCTCCTCGCAATATCTTATCTCGGATCCGGGTCAGTTTCTCATCAGTGAATTGCTTTCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTATCCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATTGGCATTTGGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCTTTTCCCGGATGATATAATATAGTTATATCATAGTCCTTCAGTAGTTCCATCCATCTCCTCTGCCTTAGATTTAAATCTTTCTGAGTAAAGACATACTGTAGGCTACGATGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACCGCCGCTAACTCCAAATCATGG</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAAACCCATAGAGATAATGGCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353207" ref_strand="+" ref_description="SGN-E353207 [cTOS-14-B13]">
      <seq>tcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatactccttcccttattctcaaaacaccttcctcatcgatttttgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="-" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69184" stop="68043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68884" g_stop="68343" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="-" ref_id="SGN-E353207" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68884" e_stop="68343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAATCGAACAACTTCCGAGATGTAAAGTTTGGCTAACTTTTCTGCATTGTAAGTCACCCTGACCGGAATGAAGTGAGCAGACTTAGTCAACCTATCCACAATTACCCAAATGGAGTCATACTTACCCATTGTCTTGGGAAGACCAACCACGAAGTCCATTGGAATTCTCTCCCATTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGAAACAAAATCAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAGTACTTTGAACTGTGAGCCTCTATAAGAATAGTGCGAATCAAATCATCGACGCGGGGTACACATACTCTTCCCTTAATTCTCAAAACATCTTCCTCATCGATTTTTGCTTCTTT</genome_strand>
        <mrna_strand>TCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCCTTCCCTTATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="-" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69406" stop="68629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69106" g_stop="68930" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="-" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69106" e_stop="68930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTCCCATACAGTGCCTCAAATGGGGCCATACCAATACTTGAGTGATAGCTATTGTTGTATGAGAATTCTGCTAAGGGTAGGAAGTTATCCCAATGACCACCAAATTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242274" ref_strand="+" ref_description="SGN-E242274 [cLEE-3-A13]">
      <seq>tgagtcgacggatcccacgacggaccgtcatgagcacgacggaccgtggagggtgtctcgttccaaaacacttagaattctgaaatttgggtactgagatcgactctctgaacttcgcgacgaaatggcacgacggaccgtcacaggcatgacgggctgtcacaaacccttagtgaaatttaatctctgaactttgtgacggaagcagcaggacggaccgtcgcaggcacgactggtcgtcacagactgcgtaaccctgactgggtcggatttttgttaaatgttttaaggggcgttttggactattcctgcttataattatgaaattagtggtttaatgttaataattcaattacttggggggttgaaggagataaccttgaattaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69521" stop="70508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69821" g_stop="70208" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E242274" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69821" e_stop="70208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTCGACGGATCCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGTGTCTCGTTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGAGATCGACTCTCTGAACTTCGCGAAGAAATGGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGACCCTTGGTGAAATTTAGTCTCTGAACTTTTTGACGGAAGCAGCAGGAAGGACCGTCGCAGGCACGAAGGGCCGTCACAGACTGTGTAACCCTGACTGGGTCGGATTTCTGTTAAATGTTTTAAGGGGCGTTTTGGACTATTCCTGCTTATAATTATAAAGTTAGTGG-GTAATATTAATAATTCAATTACTT-GAGGGTTAAAGGAGATAACCTTGAATTAATT</genome_strand>
        <mrna_strand>TGAGTCGACGGATCCCACGACGGACCGTCATGAGCACGACGGACCGTGGAGGGTGTCTCGTTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGAGATCGACTCTCTGAACTTCGCGACGAAATGGCACGACGGACCGTCACAGGCATGACGGGCTGTCACAAACCCTTAGTGAAATTTAATCTCTGAACTTTGTGACGGAAGCAGCAGGACGGACCGTCGCAGGCACGACTGGTCGTCACAGACTGCGTAACCCTGACTGGGTCGGATTTTTGTTAAATGTTTTAAGGGGCGTTTTGGACTATTCCTGCTTATAATTATGAAATTAGTGGTTTAATGTTAATAATTCAATTACTTGGGGGGTTGAAGGAGATAACCTTGAATTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245978" ref_strand="+" ref_description="SGN-E245978 [cLEF-51-O12]">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="-" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89175" stop="88276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88876" g_stop="88576" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="-" ref_id="SGN-E245978" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88876" e_stop="88576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTACGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTTGTACTGTCACTCTCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTTCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGGTCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACACGTTTGAAAATGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367110" ref_strand="+" ref_description="SGN-E367110 [cLPT-5-O20]">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="-" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89602" stop="88517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89302" g_stop="88817" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="-" ref_id="SGN-E367110" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89302" e_stop="88817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCATTTTGGGTCCTTCCGGGCTACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCTGTGTTAACCCGTGGCAAAGTCGGTATCTTTAAACCCAAAATCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTAAAAAAATGCTTATTGGCGTCATGCTATGTATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGACACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGACAGTATTTCCAGGTACAATGCTCATTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTACGAGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203599" ref_strand="+" ref_description="SGN-E203599 [cLEC-15-A18]">
      <seq>tcatcccaaatctagaagaaagaagctcaacaggtcgtcttttctgtcaactccgggaaagagtagaaaagacggaagctgttgtttgtgtataacgcttgaatcgatcatcaaattcaaaactgattcttctacaatctactagtatagtatatgatggtgctgtcacagcttcacggagcattcaagggtacggtggagagaatcactagccctcgtaccgtctctgctttcaaagaaaaaggtgttctcagcgtcagcgaattcgtcatagctggagataatctcgtctccaaatgccctacctggtcttgggaatcaggtgagcctagtaagaggaagtcttatttaccagccgacaagcaatttttgataactagaaatgttccttgtctgagaagagctgcatcaatagaggaagaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100386" stop="102947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100686" g_stop="100999" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101000" i_stop="101430" i_length="431">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101431" g_stop="101501" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="385" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101502" i_stop="102606" i_length="1105">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102607" g_stop="102647" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="426" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E203599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100686" e_stop="100999"/>
          <exon e_start="101431" e_stop="101501"/>
          <exon e_start="102607" e_stop="102647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCCCAAATCTAGAAGAAAGAAGCTCAACAGGTCGTCTTTTCTGTCAACTCCGGGAAAGAGTAGAAAAGACGGAAGCTGTTGTTTGTGTATAACGCTTGAATCGATCATCAAATTCAAAACTGATTCTTCTACAATCTACTAGTATAGTATATGATGGTGCTGTCACAGCTTCACGGAGCATTCAAGGGTACGGTGGAGAGAATCACTAGCCCTCGTACCGTCTCTGCTTTCAAAGAAAAAGGTGTTCTCAGCGTCAGCGAATTCGTCATAGCTGGAGATAATCTCGTCTCCAAATGCCCTACCTGGTCTTGGTAATTTTGCTTTTCTGAATTAGATCTAATTTGAAAAAGTTGTTAATAATGTTAATTTTTCAAGGGCAACACTGGATTTTATATGTATATAGCCTTATTATTATGTTATATTTTGTTCCCGGTTGACATATGATCCAACTTGTTGGTCATTATCTTATATAATAGATTTAGAGTTTGTTTTGATGCTAAAGTGAAAATTGATTGATCGGACTATTGATTTCTCAAATCGTTGAAGGTTTATGCACTTTCACTTGATATGTTGATCAATTTTTTGATTTTAGAACATGACAAGAAAAAAGAGTGTGCTTTCCAGGATTTTATTTATGCATTGGTCAACCTAATGTTACGTTTTTCTGCTGCTTGTAAAGTTCTGATTGGATTTATTGCTGTTGCATCTAATTCTTATGTCATGGTTCATGATTCATTAACAGGGAATCAGGTGAGCCTAGTAAGAGGAAGTCTTATTTACCAGCCGACAAGCAATTTTTGATAACTAGAAATGGTATGTATCTACAACCATCATCCTGCTAGTAGTTTTCATAGAATTCAATCTGTTTAGGGATTATATGAGTTAGCCAAGTGATAGGTGCATGATGAATTCATTCTTTAACTTAATAGCTGATAAATTTACACTTTTTAACAGAATAACTCATTTAATTTAAGCTAAATTAATCCTTAAAATAAACAAAAAAACTAAGAAGTTCTGGTCAATAGTTGAAAGTTGACAGTCTTAACACATTTGATGTATCCATGTAACTTTTGGAGATGTTATCCTCATGTTAGATATCCATCATCATCAGAATCCAGAACTGATAATCTGTAATACTAACTTGTTAAACCTTTCTATGCAATTTCAAGAGCTTACTGAGAAAGGGAGGTTTAATAATCTAATATGAAGAACAATACTGATGCGTATGGATGTAGCCATGAGCTAAGGGAGCATGAGGACTCACATCTTTATTGTCCAACACATGTTATGCTCAGTGTCTTATTGTTTCAAGTGATATCATGATAACCTTGAGAAGTAACTATGAGGTTAGGAAATAGGACTAAGAACTGTATTGTCTAAGTCTCTAAGATATGTTACACACTGAATCTATGCGTTTCAGTCTGCTCCTTGTATATCAATTTAAGCATCTTGCTAAGGATGCTTCTGTTGCCTCGTGCTGTATCCTCTTCCAACCTAGCTCATTAATCTTCTCTTTGGAATTGGTAATTTTTATTTTATTTTGAGATTTCCAATCTTTAACGACTTCTTAAGAATTTTAGCACCCCATACCACTGAAAGAAGGTGGAACTATGTATGTTGTAGTTCTCTTGACCATTCTTTCAGAGATTTCTTTATTCATAGGCGTTCTCTACTTGTCTCATACTCTCATTTTAAAAAAAGCTGTCCGATGCACAAAGCAGCCTCGTTAGCTGGGTCGCACCCCAAGGATTGTGATGTAGAAAGCTTACCCTAATGCAAACATTAGTGGCTGCCTCCATGACTCAAACCCGTGACCTATAAGTCCCATGGTGACAACTTTACCGTTGCTCTAGGGCTCCACTTTAAACTTTTGTTATGTGTCAGCACAAGTGATGTGCCACTTTAACTTTGTACACAGTTCCTTGTCTGAGAAGAGCTGCATCAATAGAGGAAGAATAT</genome_strand>
        <mrna_strand>TCATCCCAAATCTAGAAGAAAGAAGCTCAACAGGTCGTCTTTTCTGTCAACTCCGGGAAAGAGTAGAAAAGACGGAAGCTGTTGTTTGTGTATAACGCTTGAATCGATCATCAAATTCAAAACTGATTCTTCTACAATCTACTAGTATAGTATATGATGGTGCTGTCACAGCTTCACGGAGCATTCAAGGGTACGGTGGAGAGAATCACTAGCCCTCGTACCGTCTCTGCTTTCAAAGAAAAAGGTGTTCTCAGCGTCAGCGAATTCGTCATAGCTGGAGATAATCTCGTCTCCAAATGCCCTACCTGGTCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATCAGGTGAGCCTAGTAAGAGGAAGTCTTATTTACCAGCCGACAAGCAATTTTTGATAACTAGAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTTGTCTGAGAAGAGCTGCATCAATAGAGGAAGAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323685" ref_strand="+" ref_description="SGN-E323685 [cTOC-2-F23]">
      <seq>aagaaagaagctcaacaagtcgtcttttctgtcaacttcgggaaagagtagaaaagaccgaagctgttgtttgtgtataacgcttgaatcgatcatcaaattcaaaactgattcttctacaatctactagtatagtatatgatggtgctgtcacagcttcacggagcattcaagggtacggtggagagaatcactagccctcgtaccgtctctgctttcaaagaaaaaggtgttctcagcgtcagcgaattcgtcatagctggagataatctcgtctccaaatgccctacctggtcttgggaatcaggtgagcctagtaagaggaagtcttatttaccagccgacaagcaatttttgataactagaaatgttccttgtctgagaagagctgcatcaatagaggaagaatatgaggctgctggaggtgaagttcttcttgataatgaagataatgatggttggctggcaactcatggcaaaccaaaagaaaacaatggtgctgaggatgataatttgccatctatagacgcatcagaaatcaacaagaagaacactatccagtcaatcccatcatacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100401" stop="103203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100701" g_stop="100999" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101000" i_stop="101430" i_length="431">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101431" g_stop="101501" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="370" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101502" i_stop="102606" i_length="1105">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102607" g_stop="102723" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="487" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102724" i_stop="102811" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102812" g_stop="102903" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="579" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E323685" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100701" e_stop="100999"/>
          <exon e_start="101431" e_stop="101501"/>
          <exon e_start="102607" e_stop="102723"/>
          <exon e_start="102812" e_stop="102903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGAAGCTCAACAGGTCGTCTTTTCTGTCAACTCCGGGAAAGAGTAGAAAAGACGGAAGCTGTTGTTTGTGTATAACGCTTGAATCGATCATCAAATTCAAAACTGATTCTTCTACAATCTACTAGTATAGTATATGATGGTGCTGTCACAGCTTCACGGAGCATTCAAGGGTACGGTGGAGAGAATCACTAGCCCTCGTACCGTCTCTGCTTTCAAAGAAAAAGGTGTTCTCAGCGTCAGCGAATTCGTCATAGCTGGAGATAATCTCGTCTCCAAATGCCCTACCTGGTCTTGGTAATTTTGCTTTTCTGAATTAGATCTAATTTGAAAAAGTTGTTAATAATGTTAATTTTTCAAGGGCAACACTGGATTTTATATGTATATAGCCTTATTATTATGTTATATTTTGTTCCCGGTTGACATATGATCCAACTTGTTGGTCATTATCTTATATAATAGATTTAGAGTTTGTTTTGATGCTAAAGTGAAAATTGATTGATCGGACTATTGATTTCTCAAATCGTTGAAGGTTTATGCACTTTCACTTGATATGTTGATCAATTTTTTGATTTTAGAACATGACAAGAAAAAAGAGTGTGCTTTCCAGGATTTTATTTATGCATTGGTCAACCTAATGTTACGTTTTTCTGCTGCTTGTAAAGTTCTGATTGGATTTATTGCTGTTGCATCTAATTCTTATGTCATGGTTCATGATTCATTAACAGGGAATCAGGTGAGCCTAGTAAGAGGAAGTCTTATTTACCAGCCGACAAGCAATTTTTGATAACTAGAAATGGTATGTATCTACAACCATCATCCTGCTAGTAGTTTTCATAGAATTCAATCTGTTTAGGGATTATATGAGTTAGCCAAGTGATAGGTGCATGATGAATTCATTCTTTAACTTAATAGCTGATAAATTTACACTTTTTAACAGAATAACTCATTTAATTTAAGCTAAATTAATCCTTAAAATAAACAAAAAAACTAAGAAGTTCTGGTCAATAGTTGAAAGTTGACAGTCTTAACACATTTGATGTATCCATGTAACTTTTGGAGATGTTATCCTCATGTTAGATATCCATCATCATCAGAATCCAGAACTGATAATCTGTAATACTAACTTGTTAAACCTTTCTATGCAATTTCAAGAGCTTACTGAGAAAGGGAGGTTTAATAATCTAATATGAAGAACAATACTGATGCGTATGGATGTAGCCATGAGCTAAGGGAGCATGAGGACTCACATCTTTATTGTCCAACACATGTTATGCTCAGTGTCTTATTGTTTCAAGTGATATCATGATAACCTTGAGAAGTAACTATGAGGTTAGGAAATAGGACTAAGAACTGTATTGTCTAAGTCTCTAAGATATGTTACACACTGAATCTATGCGTTTCAGTCTGCTCCTTGTATATCAATTTAAGCATCTTGCTAAGGATGCTTCTGTTGCCTCGTGCTGTATCCTCTTCCAACCTAGCTCATTAATCTTCTCTTTGGAATTGGTAATTTTTATTTTATTTTGAGATTTCCAATCTTTAACGACTTCTTAAGAATTTTAGCACCCCATACCACTGAAAGAAGGTGGAACTATGTATGTTGTAGTTCTCTTGACCATTCTTTCAGAGATTTCTTTATTCATAGGCGTTCTCTACTTGTCTCATACTCTCATTTTAAAAAAAGCTGTCCGATGCACAAAGCAGCCTCGTTAGCTGGGTCGCACCCCAAGGATTGTGATGTAGAAAGCTTACCCTAATGCAAACATTAGTGGCTGCCTCCATGACTCAAACCCGTGACCTATAAGTCCCATGGTGACAACTTTACCGTTGCTCTAGGGCTCCACTTTAAACTTTTGTTATGTGTCAGCACAAGTGATGTGCCACTTTAACTTTGTACACAGTTCCTTGTCTGAGAAGAGCTGCATCAATAGAGGAAGAATATGAGGCTGCTGGAGGTGAAGTTCTTCTTGATAATGAAGATAATGATGGTTGGCTGGCAACTCATGGCAAACCAAAAGGTATCTAGTATATCAATACTTTCCAGTAACAAATTGAGTTTTATTTATCAATTTTGCCTCGTGACATTTCATCCCATTTATTTCTTAGAAAACAATGGTGCTGAGGATGATAATTTGCCATCTATAGACGCATCAGAAATCAACAAGAAGAACACTATCCAGTCAATCCCATCATACTTT</genome_strand>
        <mrna_strand>AAGAAAGAAGCTCAACAAGTCGTCTTTTCTGTCAACTTCGGGAAAGAGTAGAAAAGACCGAAGCTGTTGTTTGTGTATAACGCTTGAATCGATCATCAAATTCAAAACTGATTCTTCTACAATCTACTAGTATAGTATATGATGGTGCTGTCACAGCTTCACGGAGCATTCAAGGGTACGGTGGAGAGAATCACTAGCCCTCGTACCGTCTCTGCTTTCAAAGAAAAAGGTGTTCTCAGCGTCAGCGAATTCGTCATAGCTGGAGATAATCTCGTCTCCAAATGCCCTACCTGGTCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATCAGGTGAGCCTAGTAAGAGGAAGTCTTATTTACCAGCCGACAAGCAATTTTTGATAACTAGAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTTGTCTGAGAAGAGCTGCATCAATAGAGGAAGAATATGAGGCTGCTGGAGGTGAAGTTCTTCTTGATAATGAAGATAATGATGGTTGGCTGGCAACTCATGGCAAACCAAAAG........................................................................................AAAACAATGGTGCTGAGGATGATAATTTGCCATCTATAGACGCATCAGAAATCAACAAGAAGAACACTATCCAGTCAATCCCATCATACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697901" ref_strand="+" ref_description="SGN-E697901 [FA04CE11]">
      <seq>ccctttgaagctcaacaggtcgctcttttctgtcaactccgggcaatagtagaaaagacggaagctgttgtttgtgtataacgcttgaatcgatcatcaaattcaaaactgattcttctacaatctactagtatagtatatgatggtgctgtcacagcttcacggagcattcaagggtacggtggagagaatcactagccctcgtaccgtctctgctttcaaagaaaaaggtgttctcagcgtcagcgaattcgtcatagctggagataatctcgtctccaaatgccctacctggtcttgggaatcaggtgagcctagcaagaggaagtcttatttaccagccgacaagcaatttttgataactagaaatgttccttgtctgagaagagctgcatcaatagaggaagaatatgaggctgctggaggtgaagttcttcttgataatgaagataatgatggttggctggcaactcatggcaaaccaaaagaaaacaatggcgctgaagatgataatttgccatctatagacgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100407" stop="103155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100701" g_stop="100999" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101000" i_stop="101430" i_length="431">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101431" g_stop="101501" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="371" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101502" i_stop="102606" i_length="1105">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102607" g_stop="102723" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="488" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102724" i_stop="102811" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102812" g_stop="102855" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="532" r_length="44" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E697901" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100701" e_stop="100999"/>
          <exon e_start="101431" e_stop="101501"/>
          <exon e_start="102607" e_stop="102723"/>
          <exon e_start="102812" e_stop="102855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGAAGCTCAACAGGTCG-TCTTTTCTGTCAACTCCGGGAAAGAGTAGAAAAGACGGAAGCTGTTGTTTGTGTATAACGCTTGAATCGATCATCAAATTCAAAACTGATTCTTCTACAATCTACTAGTATAGTATATGATGGTGCTGTCACAGCTTCACGGAGCATTCAAGGGTACGGTGGAGAGAATCACTAGCCCTCGTACCGTCTCTGCTTTCAAAGAAAAAGGTGTTCTCAGCGTCAGCGAATTCGTCATAGCTGGAGATAATCTCGTCTCCAAATGCCCTACCTGGTCTTGGTAATTTTGCTTTTCTGAATTAGATCTAATTTGAAAAAGTTGTTAATAATGTTAATTTTTCAAGGGCAACACTGGATTTTATATGTATATAGCCTTATTATTATGTTATATTTTGTTCCCGGTTGACATATGATCCAACTTGTTGGTCATTATCTTATATAATAGATTTAGAGTTTGTTTTGATGCTAAAGTGAAAATTGATTGATCGGACTATTGATTTCTCAAATCGTTGAAGGTTTATGCACTTTCACTTGATATGTTGATCAATTTTTTGATTTTAGAACATGACAAGAAAAAAGAGTGTGCTTTCCAGGATTTTATTTATGCATTGGTCAACCTAATGTTACGTTTTTCTGCTGCTTGTAAAGTTCTGATTGGATTTATTGCTGTTGCATCTAATTCTTATGTCATGGTTCATGATTCATTAACAGGGAATCAGGTGAGCCTAGTAAGAGGAAGTCTTATTTACCAGCCGACAAGCAATTTTTGATAACTAGAAATGGTATGTATCTACAACCATCATCCTGCTAGTAGTTTTCATAGAATTCAATCTGTTTAGGGATTATATGAGTTAGCCAAGTGATAGGTGCATGATGAATTCATTCTTTAACTTAATAGCTGATAAATTTACACTTTTTAACAGAATAACTCATTTAATTTAAGCTAAATTAATCCTTAAAATAAACAAAAAAACTAAGAAGTTCTGGTCAATAGTTGAAAGTTGACAGTCTTAACACATTTGATGTATCCATGTAACTTTTGGAGATGTTATCCTCATGTTAGATATCCATCATCATCAGAATCCAGAACTGATAATCTGTAATACTAACTTGTTAAACCTTTCTATGCAATTTCAAGAGCTTACTGAGAAAGGGAGGTTTAATAATCTAATATGAAGAACAATACTGATGCGTATGGATGTAGCCATGAGCTAAGGGAGCATGAGGACTCACATCTTTATTGTCCAACACATGTTATGCTCAGTGTCTTATTGTTTCAAGTGATATCATGATAACCTTGAGAAGTAACTATGAGGTTAGGAAATAGGACTAAGAACTGTATTGTCTAAGTCTCTAAGATATGTTACACACTGAATCTATGCGTTTCAGTCTGCTCCTTGTATATCAATTTAAGCATCTTGCTAAGGATGCTTCTGTTGCCTCGTGCTGTATCCTCTTCCAACCTAGCTCATTAATCTTCTCTTTGGAATTGGTAATTTTTATTTTATTTTGAGATTTCCAATCTTTAACGACTTCTTAAGAATTTTAGCACCCCATACCACTGAAAGAAGGTGGAACTATGTATGTTGTAGTTCTCTTGACCATTCTTTCAGAGATTTCTTTATTCATAGGCGTTCTCTACTTGTCTCATACTCTCATTTTAAAAAAAGCTGTCCGATGCACAAAGCAGCCTCGTTAGCTGGGTCGCACCCCAAGGATTGTGATGTAGAAAGCTTACCCTAATGCAAACATTAGTGGCTGCCTCCATGACTCAAACCCGTGACCTATAAGTCCCATGGTGACAACTTTACCGTTGCTCTAGGGCTCCACTTTAAACTTTTGTTATGTGTCAGCACAAGTGATGTGCCACTTTAACTTTGTACACAGTTCCTTGTCTGAGAAGAGCTGCATCAATAGAGGAAGAATATGAGGCTGCTGGAGGTGAAGTTCTTCTTGATAATGAAGATAATGATGGTTGGCTGGCAACTCATGGCAAACCAAAAGGTATCTAGTATATCAATACTTTCCAGTAACAAATTGAGTTTTATTTATCAATTTTGCCTCGTGACATTTCATCCCATTTATTTCTTAGAAAACAATGGTGCTGAGGATGATAATTTGCCATCTATAGACGCA</genome_strand>
        <mrna_strand>CCCTTTGAAGCTCAACAGGTCGCTCTTTTCTGTCAACTCCGGGCAATAGTAGAAAAGACGGAAGCTGTTGTTTGTGTATAACGCTTGAATCGATCATCAAATTCAAAACTGATTCTTCTACAATCTACTAGTATAGTATATGATGGTGCTGTCACAGCTTCACGGAGCATTCAAGGGTACGGTGGAGAGAATCACTAGCCCTCGTACCGTCTCTGCTTTCAAAGAAAAAGGTGTTCTCAGCGTCAGCGAATTCGTCATAGCTGGAGATAATCTCGTCTCCAAATGCCCTACCTGGTCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATCAGGTGAGCCTAGCAAGAGGAAGTCTTATTTACCAGCCGACAAGCAATTTTTGATAACTAGAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTTGTCTGAGAAGAGCTGCATCAATAGAGGAAGAATATGAGGCTGCTGGAGGTGAAGTTCTTCTTGATAATGAAGATAATGATGGTTGGCTGGCAACTCATGGCAAACCAAAAG........................................................................................AAAACAATGGCGCTGAAGATGATAATTTGCCATCTATAGACGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316874" ref_strand="+" ref_description="SGN-E316874 [cTOA-27-E24]">
      <seq>gaagctcaacaggtcgtcttttctgtcaactccgggaaagagtagaaaagacggaagctgttgtttgtgtataacgcttgaatcgatcatcaaattcaaaactgattcttctacaatctactagtatagtatatgatggtgctgtcacagcttcacggagcattcaagggtacggtggagagaatcactagccctcgtaccgtctctgctttcaaagaaaaaggtgttctcagcgtcagcgaattcgtcatagctggagataatctcgtctccaaatgccctacctggtcttgggaatcaggtgagcctagtaagaggaagtcttatttaccagccgacaagcaatttttgataactagaaatgttccttgtctgagaagagctgcatcaatagaggaagaatatgaggctgctggaggtgaagttcttcttgataatgaagataatgatggttggctggcaactcatggcaaaccaaaagaaaacaatggtgctgaggatgataatttgccatctatagacgcatcagaaatcaacaagaagaacactatccagtcaatcccatcatactttggaggcgaggaagaggangacatacctgacatgggagattatgangaagctgacnatcttatagaaacagaccctgccacccttcagactacatatcttgtggccaatgagcctgatgatgacaacattctaagaacacgaacctatgatgtcagcatcacgtatgacaatattatcaaacacctcgtgtgtggctcactggatatgatgagtcaaggatgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100407" stop="104430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100707" g_stop="100999" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101000" i_stop="101430" i_length="431">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101431" g_stop="101501" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="364" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101502" i_stop="102606" i_length="1105">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102607" g_stop="102723" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="481" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102724" i_stop="102811" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102812" g_stop="102978" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="648" r_length="167" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102979" i_stop="103881" i_length="903">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103882" g_stop="103967" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="734" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="103968" i_stop="104074" i_length="107">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104075" g_stop="104126" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="785" r_length="51" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E316874" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100707" e_stop="100999"/>
          <exon e_start="101431" e_stop="101501"/>
          <exon e_start="102607" e_stop="102723"/>
          <exon e_start="102812" e_stop="102978"/>
          <exon e_start="103882" e_stop="103967"/>
          <exon e_start="104075" e_stop="104126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTCAACAGGTCGTCTTTTCTGTCAACTCCGGGAAAGAGTAGAAAAGACGGAAGCTGTTGTTTGTGTATAACGCTTGAATCGATCATCAAATTCAAAACTGATTCTTCTACAATCTACTAGTATAGTATATGATGGTGCTGTCACAGCTTCACGGAGCATTCAAGGGTACGGTGGAGAGAATCACTAGCCCTCGTACCGTCTCTGCTTTCAAAGAAAAAGGTGTTCTCAGCGTCAGCGAATTCGTCATAGCTGGAGATAATCTCGTCTCCAAATGCCCTACCTGGTCTTGGTAATTTTGCTTTTCTGAATTAGATCTAATTTGAAAAAGTTGTTAATAATGTTAATTTTTCAAGGGCAACACTGGATTTTATATGTATATAGCCTTATTATTATGTTATATTTTGTTCCCGGTTGACATATGATCCAACTTGTTGGTCATTATCTTATATAATAGATTTAGAGTTTGTTTTGATGCTAAAGTGAAAATTGATTGATCGGACTATTGATTTCTCAAATCGTTGAAGGTTTATGCACTTTCACTTGATATGTTGATCAATTTTTTGATTTTAGAACATGACAAGAAAAAAGAGTGTGCTTTCCAGGATTTTATTTATGCATTGGTCAACCTAATGTTACGTTTTTCTGCTGCTTGTAAAGTTCTGATTGGATTTATTGCTGTTGCATCTAATTCTTATGTCATGGTTCATGATTCATTAACAGGGAATCAGGTGAGCCTAGTAAGAGGAAGTCTTATTTACCAGCCGACAAGCAATTTTTGATAACTAGAAATGGTATGTATCTACAACCATCATCCTGCTAGTAGTTTTCATAGAATTCAATCTGTTTAGGGATTATATGAGTTAGCCAAGTGATAGGTGCATGATGAATTCATTCTTTAACTTAATAGCTGATAAATTTACACTTTTTAACAGAATAACTCATTTAATTTAAGCTAAATTAATCCTTAAAATAAACAAAAAAACTAAGAAGTTCTGGTCAATAGTTGAAAGTTGACAGTCTTAACACATTTGATGTATCCATGTAACTTTTGGAGATGTTATCCTCATGTTAGATATCCATCATCATCAGAATCCAGAACTGATAATCTGTAATACTAACTTGTTAAACCTTTCTATGCAATTTCAAGAGCTTACTGAGAAAGGGAGGTTTAATAATCTAATATGAAGAACAATACTGATGCGTATGGATGTAGCCATGAGCTAAGGGAGCATGAGGACTCACATCTTTATTGTCCAACACATGTTATGCTCAGTGTCTTATTGTTTCAAGTGATATCATGATAACCTTGAGAAGTAACTATGAGGTTAGGAAATAGGACTAAGAACTGTATTGTCTAAGTCTCTAAGATATGTTACACACTGAATCTATGCGTTTCAGTCTGCTCCTTGTATATCAATTTAAGCATCTTGCTAAGGATGCTTCTGTTGCCTCGTGCTGTATCCTCTTCCAACCTAGCTCATTAATCTTCTCTTTGGAATTGGTAATTTTTATTTTATTTTGAGATTTCCAATCTTTAACGACTTCTTAAGAATTTTAGCACCCCATACCACTGAAAGAAGGTGGAACTATGTATGTTGTAGTTCTCTTGACCATTCTTTCAGAGATTTCTTTATTCATAGGCGTTCTCTACTTGTCTCATACTCTCATTTTAAAAAAAGCTGTCCGATGCACAAAGCAGCCTCGTTAGCTGGGTCGCACCCCAAGGATTGTGATGTAGAAAGCTTACCCTAATGCAAACATTAGTGGCTGCCTCCATGACTCAAACCCGTGACCTATAAGTCCCATGGTGACAACTTTACCGTTGCTCTAGGGCTCCACTTTAAACTTTTGTTATGTGTCAGCACAAGTGATGTGCCACTTTAACTTTGTACACAGTTCCTTGTCTGAGAAGAGCTGCATCAATAGAGGAAGAATATGAGGCTGCTGGAGGTGAAGTTCTTCTTGATAATGAAGATAATGATGGTTGGCTGGCAACTCATGGCAAACCAAAAGGTATCTAGTATATCAATACTTTCCAGTAACAAATTGAGTTTTATTTATCAATTTTGCCTCGTGACATTTCATCCCATTTATTTCTTAGAAAACAATGGTGCTGAGGATGATAATTTGCCATCTATAGACGCATCAGAAATCAACAAGAAGAACACTATCCAGTCAATCCCATCATACTTTGGAGGCGAGGAAGAGGAGGACATACCTGACATGGGAGATTATGAGGAAGCTGACAATCTTATAGAAACAGACCCTGTAAGAACTGTCTCTCGCTGAATGCATTATTGTTTTAAATCTGTGTAATCTTAACAGCGTATTGTTTCACGTTGTATTTGATCATAAAAAGTCCCACCACAATGGTTTCGTGCAGAGTCATGATCCAATCTGTTGGCTACTTGTCTCTAGTGGTTCATGCCCATAATCTAAAACTCCTGATGCTATTTCTTCATGGTCTTTGATAATGGATTTCTTGGTGCTCTGGTTGAGTTTATGTAAAAAAAATTCATTTCATTTGGTGAATTGTTCCTATAAGTGTCACTATCACCAACCAAATGCCTCTCCTTATAGTGTCCGTGATGTTTATAGTTAAATGTTCTGTTCTACTAATACTGTATTTTTGAAAAAGAGCTGTTTAAAACTGACCGTTTGTTATTGGTAGTTTTTAAACAGCTAAAGGCAGATACTGAATAGTTTAGAAGTGTAATGACTGCTCAGTCATTCCTCATTAGTGAGAAACTGTTAGCATCTCATTGCCCGAACATTGACCTGAGCAGGTGTACAGGATTTTAGAATAACTTGATGGGCTGATGGATCCTTTGGGAATCTTTCTTGATAAACAAGAAAAAGAATCCTTATTTCTTTTCCTTTTTGTACCCAATAGTTGCCTTCAATTTGACCTTTTTCCTGGTATAGTTTAAATAAGAAAATTCTATTTGGTACTGTTATATGCAAGGAAACTCTTTCCAAACTTTCTGGAAGCTGTCTTTCAGTTCAATGACCATTGGCTACATTCACATTCTTTTCCAAAATAAATAGAAAGAATGCTGCTCTGATCTTTGTTTGGGCTCAAAATTCAGTTTGTTGGATCTTTGTAAATTATCAGCTTTGAGATTATTCCATGTAGTACCAAAATGGTTAACTTCTCATGATTTACTGCAGGCCACCCTTCAGACTACATATCTTGTGGCCAATGAGCCTGATGATGACAACATTCTAAGAACACGAACCTATGATGTCAGCATCACGTAAGATTTCATTCATTAGCTTTTGTAATGTTGGCTATTTCATGCACTTCTGATTAAAGAGGAGTGCTAATAACTGTTACGCCAACTGTCCATATGTACTTTTGTAGGTATGACAAATATTATCAAACACCTCGTGTGTGGCTCACTGGATATGATGAG</genome_strand>
        <mrna_strand>GAAGCTCAACAGGTCGTCTTTTCTGTCAACTCCGGGAAAGAGTAGAAAAGACGGAAGCTGTTGTTTGTGTATAACGCTTGAATCGATCATCAAATTCAAAACTGATTCTTCTACAATCTACTAGTATAGTATATGATGGTGCTGTCACAGCTTCACGGAGCATTCAAGGGTACGGTGGAGAGAATCACTAGCCCTCGTACCGTCTCTGCTTTCAAAGAAAAAGGTGTTCTCAGCGTCAGCGAATTCGTCATAGCTGGAGATAATCTCGTCTCCAAATGCCCTACCTGGTCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATCAGGTGAGCCTAGTAAGAGGAAGTCTTATTTACCAGCCGACAAGCAATTTTTGATAACTAGAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTTGTCTGAGAAGAGCTGCATCAATAGAGGAAGAATATGAGGCTGCTGGAGGTGAAGTTCTTCTTGATAATGAAGATAATGATGGTTGGCTGGCAACTCATGGCAAACCAAAAG........................................................................................AAAACAATGGTGCTGAGGATGATAATTTGCCATCTATAGACGCATCAGAAATCAACAAGAAGAACACTATCCAGTCAATCCCATCATACTTTGGAGGCGAGGAAGAGGANGACATACCTGACATGGGAGATTATGANGAAGCTGACNATCTTATAGAAACAGACCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCCTTCAGACTACATATCTTGTGGCCAATGAGCCTGATGATGACAACATTCTAAGAACACGAACCTATGATGTCAGCATCAC...........................................................................................................GTATGAC-AATATTATCAAACACCTCGTGTGTGGCTCACTGGATATGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317123" ref_strand="+" ref_description="SGN-E317123 [cTOA-27-D22]">
      <seq>gaagctcaacaggtcgtcttttctgtcaactccgggaaagagtagaaaagacggaagctgttgtttgtgtataacgcttgaatcgatcatcaaattcaaaactgattcttctacaatctactagtatagtatatgatggtgctgtcacagcttcacggagcattcaagggtacggtggagagaatcactagccctcgtaccgtctctgctttcaaagaaaaaggtgttctcagcgtcagcgaattcgtcatagctggagataatctcgtctccaaatgccctacctggtcttgggaatcaggtgagcctagtaagaggaagtcttatttaccagccgacaagcaatttttgataactagaaatgttccttgtctgagaagagctgcatcaatagaggaagaatatgaggctgctggaggtgaagttcttcttgataatgaagataatgatggttggctggcaactcatggcaaaccaaaagaaaacaatggtgctgaggatgataatttgccatctatagacgcatcagaaatcaacaagaagaacactatccagtcaatcccatcatactttggaggcgaggaagaggaggacatacctgacatgggagattatgaggaagctgacaatcttatagaaacagaccctgccacccttcagactacatatcttgtggccaatgagcctgatgatgacnacattctaagaaacgaacctatgatgtcagcatcacgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100407" stop="104272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100707" g_stop="100999" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101000" i_stop="101430" i_length="431">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101431" g_stop="101501" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="364" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101502" i_stop="102606" i_length="1105">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102607" g_stop="102723" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="481" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102724" i_stop="102811" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102812" g_stop="102978" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="648" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102979" i_stop="103881" i_length="903">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103882" g_stop="103967" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="733" r_length="85" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="103968" i_stop="104074" i_length="107">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.907" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104075" g_stop="104079" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="738" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E317123" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100707" e_stop="100999"/>
          <exon e_start="101431" e_stop="101501"/>
          <exon e_start="102607" e_stop="102723"/>
          <exon e_start="102812" e_stop="102978"/>
          <exon e_start="103882" e_stop="103967"/>
          <exon e_start="104075" e_stop="104079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTCAACAGGTCGTCTTTTCTGTCAACTCCGGGAAAGAGTAGAAAAGACGGAAGCTGTTGTTTGTGTATAACGCTTGAATCGATCATCAAATTCAAAACTGATTCTTCTACAATCTACTAGTATAGTATATGATGGTGCTGTCACAGCTTCACGGAGCATTCAAGGGTACGGTGGAGAGAATCACTAGCCCTCGTACCGTCTCTGCTTTCAAAGAAAAAGGTGTTCTCAGCGTCAGCGAATTCGTCATAGCTGGAGATAATCTCGTCTCCAAATGCCCTACCTGGTCTTGGTAATTTTGCTTTTCTGAATTAGATCTAATTTGAAAAAGTTGTTAATAATGTTAATTTTTCAAGGGCAACACTGGATTTTATATGTATATAGCCTTATTATTATGTTATATTTTGTTCCCGGTTGACATATGATCCAACTTGTTGGTCATTATCTTATATAATAGATTTAGAGTTTGTTTTGATGCTAAAGTGAAAATTGATTGATCGGACTATTGATTTCTCAAATCGTTGAAGGTTTATGCACTTTCACTTGATATGTTGATCAATTTTTTGATTTTAGAACATGACAAGAAAAAAGAGTGTGCTTTCCAGGATTTTATTTATGCATTGGTCAACCTAATGTTACGTTTTTCTGCTGCTTGTAAAGTTCTGATTGGATTTATTGCTGTTGCATCTAATTCTTATGTCATGGTTCATGATTCATTAACAGGGAATCAGGTGAGCCTAGTAAGAGGAAGTCTTATTTACCAGCCGACAAGCAATTTTTGATAACTAGAAATGGTATGTATCTACAACCATCATCCTGCTAGTAGTTTTCATAGAATTCAATCTGTTTAGGGATTATATGAGTTAGCCAAGTGATAGGTGCATGATGAATTCATTCTTTAACTTAATAGCTGATAAATTTACACTTTTTAACAGAATAACTCATTTAATTTAAGCTAAATTAATCCTTAAAATAAACAAAAAAACTAAGAAGTTCTGGTCAATAGTTGAAAGTTGACAGTCTTAACACATTTGATGTATCCATGTAACTTTTGGAGATGTTATCCTCATGTTAGATATCCATCATCATCAGAATCCAGAACTGATAATCTGTAATACTAACTTGTTAAACCTTTCTATGCAATTTCAAGAGCTTACTGAGAAAGGGAGGTTTAATAATCTAATATGAAGAACAATACTGATGCGTATGGATGTAGCCATGAGCTAAGGGAGCATGAGGACTCACATCTTTATTGTCCAACACATGTTATGCTCAGTGTCTTATTGTTTCAAGTGATATCATGATAACCTTGAGAAGTAACTATGAGGTTAGGAAATAGGACTAAGAACTGTATTGTCTAAGTCTCTAAGATATGTTACACACTGAATCTATGCGTTTCAGTCTGCTCCTTGTATATCAATTTAAGCATCTTGCTAAGGATGCTTCTGTTGCCTCGTGCTGTATCCTCTTCCAACCTAGCTCATTAATCTTCTCTTTGGAATTGGTAATTTTTATTTTATTTTGAGATTTCCAATCTTTAACGACTTCTTAAGAATTTTAGCACCCCATACCACTGAAAGAAGGTGGAACTATGTATGTTGTAGTTCTCTTGACCATTCTTTCAGAGATTTCTTTATTCATAGGCGTTCTCTACTTGTCTCATACTCTCATTTTAAAAAAAGCTGTCCGATGCACAAAGCAGCCTCGTTAGCTGGGTCGCACCCCAAGGATTGTGATGTAGAAAGCTTACCCTAATGCAAACATTAGTGGCTGCCTCCATGACTCAAACCCGTGACCTATAAGTCCCATGGTGACAACTTTACCGTTGCTCTAGGGCTCCACTTTAAACTTTTGTTATGTGTCAGCACAAGTGATGTGCCACTTTAACTTTGTACACAGTTCCTTGTCTGAGAAGAGCTGCATCAATAGAGGAAGAATATGAGGCTGCTGGAGGTGAAGTTCTTCTTGATAATGAAGATAATGATGGTTGGCTGGCAACTCATGGCAAACCAAAAGGTATCTAGTATATCAATACTTTCCAGTAACAAATTGAGTTTTATTTATCAATTTTGCCTCGTGACATTTCATCCCATTTATTTCTTAGAAAACAATGGTGCTGAGGATGATAATTTGCCATCTATAGACGCATCAGAAATCAACAAGAAGAACACTATCCAGTCAATCCCATCATACTTTGGAGGCGAGGAAGAGGAGGACATACCTGACATGGGAGATTATGAGGAAGCTGACAATCTTATAGAAACAGACCCTGTAAGAACTGTCTCTCGCTGAATGCATTATTGTTTTAAATCTGTGTAATCTTAACAGCGTATTGTTTCACGTTGTATTTGATCATAAAAAGTCCCACCACAATGGTTTCGTGCAGAGTCATGATCCAATCTGTTGGCTACTTGTCTCTAGTGGTTCATGCCCATAATCTAAAACTCCTGATGCTATTTCTTCATGGTCTTTGATAATGGATTTCTTGGTGCTCTGGTTGAGTTTATGTAAAAAAAATTCATTTCATTTGGTGAATTGTTCCTATAAGTGTCACTATCACCAACCAAATGCCTCTCCTTATAGTGTCCGTGATGTTTATAGTTAAATGTTCTGTTCTACTAATACTGTATTTTTGAAAAAGAGCTGTTTAAAACTGACCGTTTGTTATTGGTAGTTTTTAAACAGCTAAAGGCAGATACTGAATAGTTTAGAAGTGTAATGACTGCTCAGTCATTCCTCATTAGTGAGAAACTGTTAGCATCTCATTGCCCGAACATTGACCTGAGCAGGTGTACAGGATTTTAGAATAACTTGATGGGCTGATGGATCCTTTGGGAATCTTTCTTGATAAACAAGAAAAAGAATCCTTATTTCTTTTCCTTTTTGTACCCAATAGTTGCCTTCAATTTGACCTTTTTCCTGGTATAGTTTAAATAAGAAAATTCTATTTGGTACTGTTATATGCAAGGAAACTCTTTCCAAACTTTCTGGAAGCTGTCTTTCAGTTCAATGACCATTGGCTACATTCACATTCTTTTCCAAAATAAATAGAAAGAATGCTGCTCTGATCTTTGTTTGGGCTCAAAATTCAGTTTGTTGGATCTTTGTAAATTATCAGCTTTGAGATTATTCCATGTAGTACCAAAATGGTTAACTTCTCATGATTTACTGCAGGCCACCCTTCAGACTACATATCTTGTGGCCAATGAGCCTGATGATGACAACATTCTAAGAACACGAACCTATGATGTCAGCATCACGTAAGATTTCATTCATTAGCTTTTGTAATGTTGGCTATTTCATGCACTTCTGATTAAAGAGGAGTGCTAATAACTGTTACGCCAACTGTCCATATGTACTTTTGTAGGTATG</genome_strand>
        <mrna_strand>GAAGCTCAACAGGTCGTCTTTTCTGTCAACTCCGGGAAAGAGTAGAAAAGACGGAAGCTGTTGTTTGTGTATAACGCTTGAATCGATCATCAAATTCAAAACTGATTCTTCTACAATCTACTAGTATAGTATATGATGGTGCTGTCACAGCTTCACGGAGCATTCAAGGGTACGGTGGAGAGAATCACTAGCCCTCGTACCGTCTCTGCTTTCAAAGAAAAAGGTGTTCTCAGCGTCAGCGAATTCGTCATAGCTGGAGATAATCTCGTCTCCAAATGCCCTACCTGGTCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATCAGGTGAGCCTAGTAAGAGGAAGTCTTATTTACCAGCCGACAAGCAATTTTTGATAACTAGAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTTGTCTGAGAAGAGCTGCATCAATAGAGGAAGAATATGAGGCTGCTGGAGGTGAAGTTCTTCTTGATAATGAAGATAATGATGGTTGGCTGGCAACTCATGGCAAACCAAAAG........................................................................................AAAACAATGGTGCTGAGGATGATAATTTGCCATCTATAGACGCATCAGAAATCAACAAGAAGAACACTATCCAGTCAATCCCATCATACTTTGGAGGCGAGGAAGAGGAGGACATACCTGACATGGGAGATTATGAGGAAGCTGACAATCTTATAGAAACAGACCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCCTTCAGACTACATATCTTGTGGCCAATGAGCCTGATGATGACNACATTCTAAGAA-ACGAACCTATGATGTCAGCATCAC...........................................................................................................GTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314198" ref_strand="+" ref_description="SGN-E314198 [cTOA-21-P12]">
      <seq>aagctcaacaggtcgtcttttctgtcaactccgggaaagagtagaaaagacggaagctgttgtttgtgtataacgcttgaatcgatcatcaaattcaaaactgattcttctacaatctactagtatagtatatgatggtgctgtcacagcttcacggagcattcaagggtacggtggagagaatcactagccctcgtaccgtctctgctttcaaagaaaaaggtgttctcagcgtcagcgaattcgtcatagctggagataatctcgtctccaaatgccctacctggtcttgggaatcaggtgagcctagtaagaggaagtcttatttaccagccgacaagcaatttttgataactagaaatgttccttgtctgagaagagctgcatcaatagaggaagaatatgaggctgctggaggtgaagttcttcttgataatgaagataatgatggttggctggcaactcatggcaaaccaaaagaaaacaatggtgctgaggatgataatttgccatctatagacgcatcagaaatcaacaagaagaacactatccagtcaatcccatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100408" stop="103199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100708" g_stop="100999" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101000" i_stop="101430" i_length="431">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101431" g_stop="101501" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="363" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101502" i_stop="102606" i_length="1105">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102607" g_stop="102723" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="480" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102724" i_stop="102811" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102812" g_stop="102899" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="568" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E314198" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100708" e_stop="100999"/>
          <exon e_start="101431" e_stop="101501"/>
          <exon e_start="102607" e_stop="102723"/>
          <exon e_start="102812" e_stop="102899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTCAACAGGTCGTCTTTTCTGTCAACTCCGGGAAAGAGTAGAAAAGACGGAAGCTGTTGTTTGTGTATAACGCTTGAATCGATCATCAAATTCAAAACTGATTCTTCTACAATCTACTAGTATAGTATATGATGGTGCTGTCACAGCTTCACGGAGCATTCAAGGGTACGGTGGAGAGAATCACTAGCCCTCGTACCGTCTCTGCTTTCAAAGAAAAAGGTGTTCTCAGCGTCAGCGAATTCGTCATAGCTGGAGATAATCTCGTCTCCAAATGCCCTACCTGGTCTTGGTAATTTTGCTTTTCTGAATTAGATCTAATTTGAAAAAGTTGTTAATAATGTTAATTTTTCAAGGGCAACACTGGATTTTATATGTATATAGCCTTATTATTATGTTATATTTTGTTCCCGGTTGACATATGATCCAACTTGTTGGTCATTATCTTATATAATAGATTTAGAGTTTGTTTTGATGCTAAAGTGAAAATTGATTGATCGGACTATTGATTTCTCAAATCGTTGAAGGTTTATGCACTTTCACTTGATATGTTGATCAATTTTTTGATTTTAGAACATGACAAGAAAAAAGAGTGTGCTTTCCAGGATTTTATTTATGCATTGGTCAACCTAATGTTACGTTTTTCTGCTGCTTGTAAAGTTCTGATTGGATTTATTGCTGTTGCATCTAATTCTTATGTCATGGTTCATGATTCATTAACAGGGAATCAGGTGAGCCTAGTAAGAGGAAGTCTTATTTACCAGCCGACAAGCAATTTTTGATAACTAGAAATGGTATGTATCTACAACCATCATCCTGCTAGTAGTTTTCATAGAATTCAATCTGTTTAGGGATTATATGAGTTAGCCAAGTGATAGGTGCATGATGAATTCATTCTTTAACTTAATAGCTGATAAATTTACACTTTTTAACAGAATAACTCATTTAATTTAAGCTAAATTAATCCTTAAAATAAACAAAAAAACTAAGAAGTTCTGGTCAATAGTTGAAAGTTGACAGTCTTAACACATTTGATGTATCCATGTAACTTTTGGAGATGTTATCCTCATGTTAGATATCCATCATCATCAGAATCCAGAACTGATAATCTGTAATACTAACTTGTTAAACCTTTCTATGCAATTTCAAGAGCTTACTGAGAAAGGGAGGTTTAATAATCTAATATGAAGAACAATACTGATGCGTATGGATGTAGCCATGAGCTAAGGGAGCATGAGGACTCACATCTTTATTGTCCAACACATGTTATGCTCAGTGTCTTATTGTTTCAAGTGATATCATGATAACCTTGAGAAGTAACTATGAGGTTAGGAAATAGGACTAAGAACTGTATTGTCTAAGTCTCTAAGATATGTTACACACTGAATCTATGCGTTTCAGTCTGCTCCTTGTATATCAATTTAAGCATCTTGCTAAGGATGCTTCTGTTGCCTCGTGCTGTATCCTCTTCCAACCTAGCTCATTAATCTTCTCTTTGGAATTGGTAATTTTTATTTTATTTTGAGATTTCCAATCTTTAACGACTTCTTAAGAATTTTAGCACCCCATACCACTGAAAGAAGGTGGAACTATGTATGTTGTAGTTCTCTTGACCATTCTTTCAGAGATTTCTTTATTCATAGGCGTTCTCTACTTGTCTCATACTCTCATTTTAAAAAAAGCTGTCCGATGCACAAAGCAGCCTCGTTAGCTGGGTCGCACCCCAAGGATTGTGATGTAGAAAGCTTACCCTAATGCAAACATTAGTGGCTGCCTCCATGACTCAAACCCGTGACCTATAAGTCCCATGGTGACAACTTTACCGTTGCTCTAGGGCTCCACTTTAAACTTTTGTTATGTGTCAGCACAAGTGATGTGCCACTTTAACTTTGTACACAGTTCCTTGTCTGAGAAGAGCTGCATCAATAGAGGAAGAATATGAGGCTGCTGGAGGTGAAGTTCTTCTTGATAATGAAGATAATGATGGTTGGCTGGCAACTCATGGCAAACCAAAAGGTATCTAGTATATCAATACTTTCCAGTAACAAATTGAGTTTTATTTATCAATTTTGCCTCGTGACATTTCATCCCATTTATTTCTTAGAAAACAATGGTGCTGAGGATGATAATTTGCCATCTATAGACGCATCAGAAATCAACAAGAAGAACACTATCCAGTCAATCCCATCATA</genome_strand>
        <mrna_strand>AAGCTCAACAGGTCGTCTTTTCTGTCAACTCCGGGAAAGAGTAGAAAAGACGGAAGCTGTTGTTTGTGTATAACGCTTGAATCGATCATCAAATTCAAAACTGATTCTTCTACAATCTACTAGTATAGTATATGATGGTGCTGTCACAGCTTCACGGAGCATTCAAGGGTACGGTGGAGAGAATCACTAGCCCTCGTACCGTCTCTGCTTTCAAAGAAAAAGGTGTTCTCAGCGTCAGCGAATTCGTCATAGCTGGAGATAATCTCGTCTCCAAATGCCCTACCTGGTCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATCAGGTGAGCCTAGTAAGAGGAAGTCTTATTTACCAGCCGACAAGCAATTTTTGATAACTAGAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTTGTCTGAGAAGAGCTGCATCAATAGAGGAAGAATATGAGGCTGCTGGAGGTGAAGTTCTTCTTGATAATGAAGATAATGATGGTTGGCTGGCAACTCATGGCAAACCAAAAG........................................................................................AAAACAATGGTGCTGAGGATGATAATTTGCCATCTATAGACGCATCAGAAATCAACAAGAAGAACACTATCCAGTCAATCCCATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702960" ref_strand="+" ref_description="SGN-E702960 [FA20AF12]">
      <seq>gctcaacaggtcgtcttttctgtcaactccgggaaagagtagaaaagacggaagctgttgtttgtgtataacgcttgaatcgatcatcaaattcaaaactgattcttctacaatctactagtatagtatatgatggtgctgtcacagcttcacggagcattcaagggtacggtggagagaatcactagccctcgtaccgtctctgctttcaaagaaaaaggtgttctcagcgtcagcgaattcgtcatagctggagataatctcgtctccaaatgccctacctggtcttgggaatcaggtgagcctagtaagaggaagtcttatttaccagccgacaagcaatttttgataactagaaatgttccttgtctgagaagagctgcatcaatagaggaagaatatgaggctgctggaggtgaagttcttcttgataatgaagataatgatggttggctggcaactcatggcaaaccaaaagaaaacaatggtgctgaggatgataatttgccatctatagacgcatcagaaatcaacaagaagaacactatccagtcaatcccatcatactttggaggcgaggaagaggaggacatacctgacatgggagattatgaggaagctgacaatcttatagaaacagaccctgccacccttcagactacatatcttgtggccaatgagcctgatgatgacaacattctaagaacacgaacctatgatgtcagcatcacgtatgacaaatattatcaaacacctcgtgtgtggctcactggatatgatgagtcaaggatgctttttgcaccagaactcgtacttgaagatgtcagtcaagaccatgcacgcaagacggtgaccattgaagacccatcacatcttccagggaaacatgcttctgtgcatccttgccgacatggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100410" stop="106771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100710" g_stop="100999" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101000" i_stop="101430" i_length="431">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101431" g_stop="101501" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="361" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101502" i_stop="102606" i_length="1105">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102607" g_stop="102723" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="478" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102724" i_stop="102811" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102812" g_stop="102978" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="645" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102979" i_stop="103881" i_length="903">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103882" g_stop="103967" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="731" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="103968" i_stop="104074" i_length="107">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104075" g_stop="104126" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="783" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104127" i_stop="105242" i_length="1116">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="105243" g_stop="105308" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="849" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="105309" i_stop="106403" i_length="1095">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="106404" g_stop="106471" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="850" r_stop="917" r_length="68" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E702960" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100710" e_stop="100999"/>
          <exon e_start="101431" e_stop="101501"/>
          <exon e_start="102607" e_stop="102723"/>
          <exon e_start="102812" e_stop="102978"/>
          <exon e_start="103882" e_stop="103967"/>
          <exon e_start="104075" e_stop="104126"/>
          <exon e_start="105243" e_stop="105308"/>
          <exon e_start="106404" e_stop="106471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAACAGGTCGTCTTTTCTGTCAACTCCGGGAAAGAGTAGAAAAGACGGAAGCTGTTGTTTGTGTATAACGCTTGAATCGATCATCAAATTCAAAACTGATTCTTCTACAATCTACTAGTATAGTATATGATGGTGCTGTCACAGCTTCACGGAGCATTCAAGGGTACGGTGGAGAGAATCACTAGCCCTCGTACCGTCTCTGCTTTCAAAGAAAAAGGTGTTCTCAGCGTCAGCGAATTCGTCATAGCTGGAGATAATCTCGTCTCCAAATGCCCTACCTGGTCTTGGTAATTTTGCTTTTCTGAATTAGATCTAATTTGAAAAAGTTGTTAATAATGTTAATTTTTCAAGGGCAACACTGGATTTTATATGTATATAGCCTTATTATTATGTTATATTTTGTTCCCGGTTGACATATGATCCAACTTGTTGGTCATTATCTTATATAATAGATTTAGAGTTTGTTTTGATGCTAAAGTGAAAATTGATTGATCGGACTATTGATTTCTCAAATCGTTGAAGGTTTATGCACTTTCACTTGATATGTTGATCAATTTTTTGATTTTAGAACATGACAAGAAAAAAGAGTGTGCTTTCCAGGATTTTATTTATGCATTGGTCAACCTAATGTTACGTTTTTCTGCTGCTTGTAAAGTTCTGATTGGATTTATTGCTGTTGCATCTAATTCTTATGTCATGGTTCATGATTCATTAACAGGGAATCAGGTGAGCCTAGTAAGAGGAAGTCTTATTTACCAGCCGACAAGCAATTTTTGATAACTAGAAATGGTATGTATCTACAACCATCATCCTGCTAGTAGTTTTCATAGAATTCAATCTGTTTAGGGATTATATGAGTTAGCCAAGTGATAGGTGCATGATGAATTCATTCTTTAACTTAATAGCTGATAAATTTACACTTTTTAACAGAATAACTCATTTAATTTAAGCTAAATTAATCCTTAAAATAAACAAAAAAACTAAGAAGTTCTGGTCAATAGTTGAAAGTTGACAGTCTTAACACATTTGATGTATCCATGTAACTTTTGGAGATGTTATCCTCATGTTAGATATCCATCATCATCAGAATCCAGAACTGATAATCTGTAATACTAACTTGTTAAACCTTTCTATGCAATTTCAAGAGCTTACTGAGAAAGGGAGGTTTAATAATCTAATATGAAGAACAATACTGATGCGTATGGATGTAGCCATGAGCTAAGGGAGCATGAGGACTCACATCTTTATTGTCCAACACATGTTATGCTCAGTGTCTTATTGTTTCAAGTGATATCATGATAACCTTGAGAAGTAACTATGAGGTTAGGAAATAGGACTAAGAACTGTATTGTCTAAGTCTCTAAGATATGTTACACACTGAATCTATGCGTTTCAGTCTGCTCCTTGTATATCAATTTAAGCATCTTGCTAAGGATGCTTCTGTTGCCTCGTGCTGTATCCTCTTCCAACCTAGCTCATTAATCTTCTCTTTGGAATTGGTAATTTTTATTTTATTTTGAGATTTCCAATCTTTAACGACTTCTTAAGAATTTTAGCACCCCATACCACTGAAAGAAGGTGGAACTATGTATGTTGTAGTTCTCTTGACCATTCTTTCAGAGATTTCTTTATTCATAGGCGTTCTCTACTTGTCTCATACTCTCATTTTAAAAAAAGCTGTCCGATGCACAAAGCAGCCTCGTTAGCTGGGTCGCACCCCAAGGATTGTGATGTAGAAAGCTTACCCTAATGCAAACATTAGTGGCTGCCTCCATGACTCAAACCCGTGACCTATAAGTCCCATGGTGACAACTTTACCGTTGCTCTAGGGCTCCACTTTAAACTTTTGTTATGTGTCAGCACAAGTGATGTGCCACTTTAACTTTGTACACAGTTCCTTGTCTGAGAAGAGCTGCATCAATAGAGGAAGAATATGAGGCTGCTGGAGGTGAAGTTCTTCTTGATAATGAAGATAATGATGGTTGGCTGGCAACTCATGGCAAACCAAAAGGTATCTAGTATATCAATACTTTCCAGTAACAAATTGAGTTTTATTTATCAATTTTGCCTCGTGACATTTCATCCCATTTATTTCTTAGAAAACAATGGTGCTGAGGATGATAATTTGCCATCTATAGACGCATCAGAAATCAACAAGAAGAACACTATCCAGTCAATCCCATCATACTTTGGAGGCGAGGAAGAGGAGGACATACCTGACATGGGAGATTATGAGGAAGCTGACAATCTTATAGAAACAGACCCTGTAAGAACTGTCTCTCGCTGAATGCATTATTGTTTTAAATCTGTGTAATCTTAACAGCGTATTGTTTCACGTTGTATTTGATCATAAAAAGTCCCACCACAATGGTTTCGTGCAGAGTCATGATCCAATCTGTTGGCTACTTGTCTCTAGTGGTTCATGCCCATAATCTAAAACTCCTGATGCTATTTCTTCATGGTCTTTGATAATGGATTTCTTGGTGCTCTGGTTGAGTTTATGTAAAAAAAATTCATTTCATTTGGTGAATTGTTCCTATAAGTGTCACTATCACCAACCAAATGCCTCTCCTTATAGTGTCCGTGATGTTTATAGTTAAATGTTCTGTTCTACTAATACTGTATTTTTGAAAAAGAGCTGTTTAAAACTGACCGTTTGTTATTGGTAGTTTTTAAACAGCTAAAGGCAGATACTGAATAGTTTAGAAGTGTAATGACTGCTCAGTCATTCCTCATTAGTGAGAAACTGTTAGCATCTCATTGCCCGAACATTGACCTGAGCAGGTGTACAGGATTTTAGAATAACTTGATGGGCTGATGGATCCTTTGGGAATCTTTCTTGATAAACAAGAAAAAGAATCCTTATTTCTTTTCCTTTTTGTACCCAATAGTTGCCTTCAATTTGACCTTTTTCCTGGTATAGTTTAAATAAGAAAATTCTATTTGGTACTGTTATATGCAAGGAAACTCTTTCCAAACTTTCTGGAAGCTGTCTTTCAGTTCAATGACCATTGGCTACATTCACATTCTTTTCCAAAATAAATAGAAAGAATGCTGCTCTGATCTTTGTTTGGGCTCAAAATTCAGTTTGTTGGATCTTTGTAAATTATCAGCTTTGAGATTATTCCATGTAGTACCAAAATGGTTAACTTCTCATGATTTACTGCAGGCCACCCTTCAGACTACATATCTTGTGGCCAATGAGCCTGATGATGACAACATTCTAAGAACACGAACCTATGATGTCAGCATCACGTAAGATTTCATTCATTAGCTTTTGTAATGTTGGCTATTTCATGCACTTCTGATTAAAGAGGAGTGCTAATAACTGTTACGCCAACTGTCCATATGTACTTTTGTAGGTATGACAAATATTATCAAACACCTCGTGTGTGGCTCACTGGATATGATGAGGTCAGTCAAAATAAAACCTCCTGTTATTGCCTTGAAGACTACTTTTTTCACCTTTTTCTTATAATGGAAAGAGTTGCAAGATGGTCCCGACAAATTCATGAAATAAATAACTTAGTAACCATACATTTGAAGAAATGGATGATACAGCGAGAGCTCACCTGGATTTATGGGTGTCCTCTTTTAGCCGGGGGGGGGGTAGTGGAAATTGTTTTTTTCCTGTTGCCTCAGGTGGAACTCTGTCAGCTCGAATAATTTAAGAGTGCTATATTATCTTTTCTTTCTGATATCACTTTCTTTATGTGCTCAGTAAACACTGACCTTCTCATTATGCTATATTATACATTATTCTTAGTCTTATCCAAATATGGGAATGCAATATTTTGTCAATGTAAGTAAATGTGATACTTAACATGAGGTTATTTTTCTCTTCATATTACACGCAAAAAAAATCTTTGTGCTCATTTCTAAGCAAAGCATGCTTCACTCTTCTTAGTCCTAATTCTGTTCACACTATGCAACATCTGCACAAAGATGAAATTTTGAACCAATGTGGTTCTCCTTGTCGAAATTTGTTGAGATCCCACATAAGTAGAGGGATGGTAATCTCCTTATATGGACCTGGACAAACCTCCTCTCATGAGCTGGCTTTTGGGGTTGAGTTAGGCCCAGGTGCCATATCTTTATGTTGTTCACCGATGTTGGCCCCCATTTAGAATTGTTCACGTTCTAGTTGAGGTCTGGGCGTGCGAGGAGTGTTGACAGGTCCCATTTCGGTAGAGGGATAGGTATTCATTCTCCTTGTATGGACTTTGACAAACCTTCCTTCATGAGCTAGCTTTTGGGGTGAGTTAGGCCCAAGTGCCATATCTTTACAAAATTCACTGAAGTTTCTATTCCTAAGATACTTGGAAAGATCCTTGTACAATGTATTTCCATTAAATGTTGCTTTCAGAAAAAGTTCCTCTCTTGTTTAGATATGCATCGTGGTCTTTTGGGGAACTTCATGTCTGATTGCAATACAGTACACTATAAGTTTATGCATCTGTGAGGGGTGATCTTTTTCCGTAATAATATTCGTCATGTGCAGTAAGCACTATTTTTGATTTTATGTGACAGTCAAGGATGCTTTTGCAACCAGAACTCGTACTTGAAGATGTCAGTCAAGACCATGCACGCAAGACGGTGAGATACATCTTTTAAGTCTTAATGTATTTGGGGACAAACTTAAATGGGTTTCTCCTTACTGTTGTTTGTTTGTAAATGAAATTGCAGTAGTTGGTCCAAGCAATGTAGAACATTGCTCCTTGTCTAATTTCTTGAGAAGTTCTAACCCAGATGGTATTGTTGTTTGCTTTGCAATCTCAGGGCTGTGTATTATTCAGTTACAAGGAAGAAACTCACTTAGTGAATCAGTTTCAGCTTACCTGTTTTTAGTTATTGCACACATCCATGCCAACCTTTAAATAAGAAATTGCATATGATGGTGTGGTGAGGGTTTTTGAAGTTATCCATTAACTGTGTGAAAAATATAATATCCTGCAAAACCTATATCAAACATGGTCTGGTAGTTTGGTCATAAGTGGTTGGATTCTTTCTTGCTAATTGGCATCTGGAAATCAAGTCCAAGTGCATGCATTCAACTTATCAACTTTTCCCCATGTTATTCTCTTTATCATTGTTGTTCTTTTATTTAAATTTTGTTGTTCTTTTATTTAAATTTAAATTTTGAAGTGAAAACTAAATGTGGCATAGTTTGTCAAAAGTTTGTTGCTTATACCTTTACTTCCTTCCCCACTACAACCACTTGCCTCCTCTGAACTCAGAGCCTTGCCGCCTAATTGGATAGCAATCAAACATTCCTAAAGACACTCTCTATCCCTTTCTTCCCCATCTCTTCTCTCCTACAAGCTTCCAATTGAACCATATTCTAAGAAATTCAACTAATGAGGCAATGATTTGTTTCACATTTGACCACTATAACTCTTTTCAAGGCCCTCTTGTTCCTTATACACAATAGAGCTTGAATGCTTGCTTTGATGCGATATCTATTCAGTACAAATCCAAACCCACCAAGGACTATTTCGGTTGACGAGCACTATCCATTTTAGCTGACTAAAACTTTTGTTCATGAACCAAATTGTAGATCTAAGCAACTGAATGAACTGTCACTTTGTTATCAACTTCCTTTCCTTTATAGCCCTTTCTCTTATTTAACTACTACAACTATTTTGTCGATGAATTCATTTTAATCTTTCCTTCTCAACATTGTTAACTCAGGTGACCATTGAAGACCATCCACATCTTCCAGGGAAACATGCTTCTGTGCATCCTTGCCGACATGGGGC</genome_strand>
        <mrna_strand>GCTCAACAGGTCGTCTTTTCTGTCAACTCCGGGAAAGAGTAGAAAAGACGGAAGCTGTTGTTTGTGTATAACGCTTGAATCGATCATCAAATTCAAAACTGATTCTTCTACAATCTACTAGTATAGTATATGATGGTGCTGTCACAGCTTCACGGAGCATTCAAGGGTACGGTGGAGAGAATCACTAGCCCTCGTACCGTCTCTGCTTTCAAAGAAAAAGGTGTTCTCAGCGTCAGCGAATTCGTCATAGCTGGAGATAATCTCGTCTCCAAATGCCCTACCTGGTCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATCAGGTGAGCCTAGTAAGAGGAAGTCTTATTTACCAGCCGACAAGCAATTTTTGATAACTAGAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTTGTCTGAGAAGAGCTGCATCAATAGAGGAAGAATATGAGGCTGCTGGAGGTGAAGTTCTTCTTGATAATGAAGATAATGATGGTTGGCTGGCAACTCATGGCAAACCAAAAG........................................................................................AAAACAATGGTGCTGAGGATGATAATTTGCCATCTATAGACGCATCAGAAATCAACAAGAAGAACACTATCCAGTCAATCCCATCATACTTTGGAGGCGAGGAAGAGGAGGACATACCTGACATGGGAGATTATGAGGAAGCTGACAATCTTATAGAAACAGACCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCCTTCAGACTACATATCTTGTGGCCAATGAGCCTGATGATGACAACATTCTAAGAACACGAACCTATGATGTCAGCATCAC...........................................................................................................GTATGACAAATATTATCAAACACCTCGTGTGTGGCTCACTGGATATGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGGATGCTTTTTGCACCAGAACTCGTACTTGAAGATGTCAGTCAAGACCATGCACGCAAGACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACCATTGAAGACCCATCACATCTTCCAGGGAAACATGCTTCTGTGCATCCTTGCCGACATGGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343706" ref_strand="+" ref_description="SGN-E343706 [cTOF-20-H11]">
      <seq>gtcgtcttttctgtcaacctccgggaaaagagtagaaaagacggaagctgttgtttgtgtataacgccttgaatcgatcactcaaattcaaaactgattcttctacaatctactagtatagtatatgaatggtgctgtcacagcttcacggagcattcaagggtacggtggagagaaatcactagccctcgtaccgtctctgctttcaaagaaaaaggtgttctcagcgtcagcgaattcgtcatagctggagataatctcgtctccaaatgccctacctggtcttgggaatcaggtgagcctagtaagaggaagtcttatttaccagccgacaagcaatttttgataactagaaatgttccttgtctgagaagagctgcatcaatagaggaagaatatgaggctgctggaggtgaagttcttcttgataatgaagataatgatggttggctggcaactcatggcaaaccaaaagaaaacaatggtgctgaggatgataatttgccatctatagacgcatcagaaatcaacaagaagaacactatccagtcaatcccatcatacttttggaggcgaggaagaggaggacatacctgacatgggagattatgaggaagctgacaatcttatagaaacagaccctgccacccttcagactacatatcttgtggccaatgagcctgatgatgacaacattctaagacacgaacttatgatgtcagcatcacgtatgacaaatattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100419" stop="104273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100719" g_stop="100999" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101000" i_stop="101430" i_length="431">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101431" g_stop="101501" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="358" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101502" i_stop="102606" i_length="1105">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102607" g_stop="102723" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="475" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102724" i_stop="102811" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102812" g_stop="102978" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="643" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102979" i_stop="103881" i_length="903">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103882" g_stop="103967" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="728" r_length="85" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="103968" i_stop="104074" i_length="107">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.907" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104075" g_stop="104090" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="744" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E343706" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100719" e_stop="100999"/>
          <exon e_start="101431" e_stop="101501"/>
          <exon e_start="102607" e_stop="102723"/>
          <exon e_start="102812" e_stop="102978"/>
          <exon e_start="103882" e_stop="103967"/>
          <exon e_start="104075" e_stop="104090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTCTTTTCTGTCAA-CTCCGGG-AAAGAGTAGAAAAGACGGAAGCTGTTGTTTGTGTATAACG-CTTGAATCGATCA-TCAAATTCAAAACTGATTCTTCTACAATCTACTAGTATAGTATATG-ATGGTGCTGTCACAGCTTCACGGAGCATTCAAGGGTACGGTGGAGAG-AATCACTAGCCCTCGTACCGTCTCTGCTTTCAAAGAAAAAGGTGTTCTCAGCGTCAGCGAATTCGTCATAGCTGGAGATAATCTCGTCTCCAAATGCCCTACCTGGTCTTGGTAATTTTGCTTTTCTGAATTAGATCTAATTTGAAAAAGTTGTTAATAATGTTAATTTTTCAAGGGCAACACTGGATTTTATATGTATATAGCCTTATTATTATGTTATATTTTGTTCCCGGTTGACATATGATCCAACTTGTTGGTCATTATCTTATATAATAGATTTAGAGTTTGTTTTGATGCTAAAGTGAAAATTGATTGATCGGACTATTGATTTCTCAAATCGTTGAAGGTTTATGCACTTTCACTTGATATGTTGATCAATTTTTTGATTTTAGAACATGACAAGAAAAAAGAGTGTGCTTTCCAGGATTTTATTTATGCATTGGTCAACCTAATGTTACGTTTTTCTGCTGCTTGTAAAGTTCTGATTGGATTTATTGCTGTTGCATCTAATTCTTATGTCATGGTTCATGATTCATTAACAGGGAATCAGGTGAGCCTAGTAAGAGGAAGTCTTATTTACCAGCCGACAAGCAATTTTTGATAACTAGAAATGGTATGTATCTACAACCATCATCCTGCTAGTAGTTTTCATAGAATTCAATCTGTTTAGGGATTATATGAGTTAGCCAAGTGATAGGTGCATGATGAATTCATTCTTTAACTTAATAGCTGATAAATTTACACTTTTTAACAGAATAACTCATTTAATTTAAGCTAAATTAATCCTTAAAATAAACAAAAAAACTAAGAAGTTCTGGTCAATAGTTGAAAGTTGACAGTCTTAACACATTTGATGTATCCATGTAACTTTTGGAGATGTTATCCTCATGTTAGATATCCATCATCATCAGAATCCAGAACTGATAATCTGTAATACTAACTTGTTAAACCTTTCTATGCAATTTCAAGAGCTTACTGAGAAAGGGAGGTTTAATAATCTAATATGAAGAACAATACTGATGCGTATGGATGTAGCCATGAGCTAAGGGAGCATGAGGACTCACATCTTTATTGTCCAACACATGTTATGCTCAGTGTCTTATTGTTTCAAGTGATATCATGATAACCTTGAGAAGTAACTATGAGGTTAGGAAATAGGACTAAGAACTGTATTGTCTAAGTCTCTAAGATATGTTACACACTGAATCTATGCGTTTCAGTCTGCTCCTTGTATATCAATTTAAGCATCTTGCTAAGGATGCTTCTGTTGCCTCGTGCTGTATCCTCTTCCAACCTAGCTCATTAATCTTCTCTTTGGAATTGGTAATTTTTATTTTATTTTGAGATTTCCAATCTTTAACGACTTCTTAAGAATTTTAGCACCCCATACCACTGAAAGAAGGTGGAACTATGTATGTTGTAGTTCTCTTGACCATTCTTTCAGAGATTTCTTTATTCATAGGCGTTCTCTACTTGTCTCATACTCTCATTTTAAAAAAAGCTGTCCGATGCACAAAGCAGCCTCGTTAGCTGGGTCGCACCCCAAGGATTGTGATGTAGAAAGCTTACCCTAATGCAAACATTAGTGGCTGCCTCCATGACTCAAACCCGTGACCTATAAGTCCCATGGTGACAACTTTACCGTTGCTCTAGGGCTCCACTTTAAACTTTTGTTATGTGTCAGCACAAGTGATGTGCCACTTTAACTTTGTACACAGTTCCTTGTCTGAGAAGAGCTGCATCAATAGAGGAAGAATATGAGGCTGCTGGAGGTGAAGTTCTTCTTGATAATGAAGATAATGATGGTTGGCTGGCAACTCATGGCAAACCAAAAGGTATCTAGTATATCAATACTTTCCAGTAACAAATTGAGTTTTATTTATCAATTTTGCCTCGTGACATTTCATCCCATTTATTTCTTAGAAAACAATGGTGCTGAGGATGATAATTTGCCATCTATAGACGCATCAGAAATCAACAAGAAGAACACTATCCAGTCAATCCCATCATAC-TTTGGAGGCGAGGAAGAGGAGGACATACCTGACATGGGAGATTATGAGGAAGCTGACAATCTTATAGAAACAGACCCTGTAAGAACTGTCTCTCGCTGAATGCATTATTGTTTTAAATCTGTGTAATCTTAACAGCGTATTGTTTCACGTTGTATTTGATCATAAAAAGTCCCACCACAATGGTTTCGTGCAGAGTCATGATCCAATCTGTTGGCTACTTGTCTCTAGTGGTTCATGCCCATAATCTAAAACTCCTGATGCTATTTCTTCATGGTCTTTGATAATGGATTTCTTGGTGCTCTGGTTGAGTTTATGTAAAAAAAATTCATTTCATTTGGTGAATTGTTCCTATAAGTGTCACTATCACCAACCAAATGCCTCTCCTTATAGTGTCCGTGATGTTTATAGTTAAATGTTCTGTTCTACTAATACTGTATTTTTGAAAAAGAGCTGTTTAAAACTGACCGTTTGTTATTGGTAGTTTTTAAACAGCTAAAGGCAGATACTGAATAGTTTAGAAGTGTAATGACTGCTCAGTCATTCCTCATTAGTGAGAAACTGTTAGCATCTCATTGCCCGAACATTGACCTGAGCAGGTGTACAGGATTTTAGAATAACTTGATGGGCTGATGGATCCTTTGGGAATCTTTCTTGATAAACAAGAAAAAGAATCCTTATTTCTTTTCCTTTTTGTACCCAATAGTTGCCTTCAATTTGACCTTTTTCCTGGTATAGTTTAAATAAGAAAATTCTATTTGGTACTGTTATATGCAAGGAAACTCTTTCCAAACTTTCTGGAAGCTGTCTTTCAGTTCAATGACCATTGGCTACATTCACATTCTTTTCCAAAATAAATAGAAAGAATGCTGCTCTGATCTTTGTTTGGGCTCAAAATTCAGTTTGTTGGATCTTTGTAAATTATCAGCTTTGAGATTATTCCATGTAGTACCAAAATGGTTAACTTCTCATGATTTACTGCAGGCCACCCTTCAGACTACATATCTTGTGGCCAATGAGCCTGATGATGACAACATTCTAAGAACACGAACCTATGATGTCAGCATCACGTAAGATTTCATTCATTAGCTTTTGTAATGTTGGCTATTTCATGCACTTCTGATTAAAGAGGAGTGCTAATAACTGTTACGCCAACTGTCCATATGTACTTTTGTAGGTATGACAAATATTAT</genome_strand>
        <mrna_strand>GTCGTCTTTTCTGTCAACCTCCGGGAAAAGAGTAGAAAAGACGGAAGCTGTTGTTTGTGTATAACGCCTTGAATCGATCACTCAAATTCAAAACTGATTCTTCTACAATCTACTAGTATAGTATATGAATGGTGCTGTCACAGCTTCACGGAGCATTCAAGGGTACGGTGGAGAGAAATCACTAGCCCTCGTACCGTCTCTGCTTTCAAAGAAAAAGGTGTTCTCAGCGTCAGCGAATTCGTCATAGCTGGAGATAATCTCGTCTCCAAATGCCCTACCTGGTCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATCAGGTGAGCCTAGTAAGAGGAAGTCTTATTTACCAGCCGACAAGCAATTTTTGATAACTAGAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTTGTCTGAGAAGAGCTGCATCAATAGAGGAAGAATATGAGGCTGCTGGAGGTGAAGTTCTTCTTGATAATGAAGATAATGATGGTTGGCTGGCAACTCATGGCAAACCAAAAG........................................................................................AAAACAATGGTGCTGAGGATGATAATTTGCCATCTATAGACGCATCAGAAATCAACAAGAAGAACACTATCCAGTCAATCCCATCATACTTTTGGAGGCGAGGAAGAGGAGGACATACCTGACATGGGAGATTATGAGGAAGCTGACAATCTTATAGAAACAGACCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCCTTCAGACTACATATCTTGTGGCCAATGAGCCTGATGATGACAACATTCTAAG-ACACGAACTTATGATGTCAGCATCAC...........................................................................................................GTATGACAAATATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236477" ref_strand="+" ref_description="SGN-E236477 [cLED-13-F12]">
      <seq>tcaagggtacggtggagagaatcactagccctcgtaccgtctctgctttcaaagaaaaaggtgttctcagcgtcagcgaattcgtcatagctggagataatctcgtctccaaatgccctacctggtcttgggaatcaggtgagcctagtaagaggaagtcttatttaccagccgacaagcaatttttgataactagaaatgttccttgtctgagaagagctgcatcaatagaggaagaatatgaggctgctggaggtgaagttcttcttgataatgaagataatgatggttggctggcaactcatggcaaaccaaaagaaaacaatggtgctgaggatgataatttgccatctatagacgcatcagaaatcaacaagaagaacactatccagtcaatcccatcatactttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100570" stop="103206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100870" g_stop="100999" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101000" i_stop="101430" i_length="431">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101431" g_stop="101501" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="201" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101502" i_stop="102606" i_length="1105">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102607" g_stop="102723" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="318" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102724" i_stop="102811" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102812" g_stop="102906" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="413" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E236477" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100870" e_stop="100999"/>
          <exon e_start="101431" e_stop="101501"/>
          <exon e_start="102607" e_stop="102723"/>
          <exon e_start="102812" e_stop="102906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGGGTACGGTGGAGAGAATCACTAGCCCTCGTACCGTCTCTGCTTTCAAAGAAAAAGGTGTTCTCAGCGTCAGCGAATTCGTCATAGCTGGAGATAATCTCGTCTCCAAATGCCCTACCTGGTCTTGGTAATTTTGCTTTTCTGAATTAGATCTAATTTGAAAAAGTTGTTAATAATGTTAATTTTTCAAGGGCAACACTGGATTTTATATGTATATAGCCTTATTATTATGTTATATTTTGTTCCCGGTTGACATATGATCCAACTTGTTGGTCATTATCTTATATAATAGATTTAGAGTTTGTTTTGATGCTAAAGTGAAAATTGATTGATCGGACTATTGATTTCTCAAATCGTTGAAGGTTTATGCACTTTCACTTGATATGTTGATCAATTTTTTGATTTTAGAACATGACAAGAAAAAAGAGTGTGCTTTCCAGGATTTTATTTATGCATTGGTCAACCTAATGTTACGTTTTTCTGCTGCTTGTAAAGTTCTGATTGGATTTATTGCTGTTGCATCTAATTCTTATGTCATGGTTCATGATTCATTAACAGGGAATCAGGTGAGCCTAGTAAGAGGAAGTCTTATTTACCAGCCGACAAGCAATTTTTGATAACTAGAAATGGTATGTATCTACAACCATCATCCTGCTAGTAGTTTTCATAGAATTCAATCTGTTTAGGGATTATATGAGTTAGCCAAGTGATAGGTGCATGATGAATTCATTCTTTAACTTAATAGCTGATAAATTTACACTTTTTAACAGAATAACTCATTTAATTTAAGCTAAATTAATCCTTAAAATAAACAAAAAAACTAAGAAGTTCTGGTCAATAGTTGAAAGTTGACAGTCTTAACACATTTGATGTATCCATGTAACTTTTGGAGATGTTATCCTCATGTTAGATATCCATCATCATCAGAATCCAGAACTGATAATCTGTAATACTAACTTGTTAAACCTTTCTATGCAATTTCAAGAGCTTACTGAGAAAGGGAGGTTTAATAATCTAATATGAAGAACAATACTGATGCGTATGGATGTAGCCATGAGCTAAGGGAGCATGAGGACTCACATCTTTATTGTCCAACACATGTTATGCTCAGTGTCTTATTGTTTCAAGTGATATCATGATAACCTTGAGAAGTAACTATGAGGTTAGGAAATAGGACTAAGAACTGTATTGTCTAAGTCTCTAAGATATGTTACACACTGAATCTATGCGTTTCAGTCTGCTCCTTGTATATCAATTTAAGCATCTTGCTAAGGATGCTTCTGTTGCCTCGTGCTGTATCCTCTTCCAACCTAGCTCATTAATCTTCTCTTTGGAATTGGTAATTTTTATTTTATTTTGAGATTTCCAATCTTTAACGACTTCTTAAGAATTTTAGCACCCCATACCACTGAAAGAAGGTGGAACTATGTATGTTGTAGTTCTCTTGACCATTCTTTCAGAGATTTCTTTATTCATAGGCGTTCTCTACTTGTCTCATACTCTCATTTTAAAAAAAGCTGTCCGATGCACAAAGCAGCCTCGTTAGCTGGGTCGCACCCCAAGGATTGTGATGTAGAAAGCTTACCCTAATGCAAACATTAGTGGCTGCCTCCATGACTCAAACCCGTGACCTATAAGTCCCATGGTGACAACTTTACCGTTGCTCTAGGGCTCCACTTTAAACTTTTGTTATGTGTCAGCACAAGTGATGTGCCACTTTAACTTTGTACACAGTTCCTTGTCTGAGAAGAGCTGCATCAATAGAGGAAGAATATGAGGCTGCTGGAGGTGAAGTTCTTCTTGATAATGAAGATAATGATGGTTGGCTGGCAACTCATGGCAAACCAAAAGGTATCTAGTATATCAATACTTTCCAGTAACAAATTGAGTTTTATTTATCAATTTTGCCTCGTGACATTTCATCCCATTTATTTCTTAGAAAACAATGGTGCTGAGGATGATAATTTGCCATCTATAGACGCATCAGAAATCAACAAGAAGAACACTATCCAGTCAATCCCATCATACTTTGGA</genome_strand>
        <mrna_strand>TCAAGGGTACGGTGGAGAGAATCACTAGCCCTCGTACCGTCTCTGCTTTCAAAGAAAAAGGTGTTCTCAGCGTCAGCGAATTCGTCATAGCTGGAGATAATCTCGTCTCCAAATGCCCTACCTGGTCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATCAGGTGAGCCTAGTAAGAGGAAGTCTTATTTACCAGCCGACAAGCAATTTTTGATAACTAGAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTTGTCTGAGAAGAGCTGCATCAATAGAGGAAGAATATGAGGCTGCTGGAGGTGAAGTTCTTCTTGATAATGAAGATAATGATGGTTGGCTGGCAACTCATGGCAAACCAAAAG........................................................................................AAAACAATGGTGCTGAGGATGATAATTTGCCATCTATAGACGCATCAGAAATCAACAAGAAGAACACTATCCAGTCAATCCCATCATACTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243582" ref_strand="+" ref_description="SGN-E243582 [cLED-34-E6]">
      <seq>tcaagggtacggtggagagaatcactagccctcgtaccgtctctgctttcaaagaaaaaggtgttctcagcgtcagcgaattcgtcatagctggagataatctcgtctccaaatgccctacctggtcttgggaatcaggtgagcctagtaagaggaagtcttatttaccagccgacaagcaatttttgataactagaaatgttccttgtctgagaagagctgcatcaatagaggaagaatatgaggctgctggaggtgaagttcttcttgataatgaagataatgatggttggctggcaactcatggcaaaccaaaagaaaacaatggtgctgaggatgataatttgccatctatagacgcatcaggaatcaacaagaagaacactatccagtcaatcccatcatactttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100570" stop="103205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100870" g_stop="100999" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101000" i_stop="101430" i_length="431">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101431" g_stop="101501" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="201" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101502" i_stop="102606" i_length="1105">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102607" g_stop="102723" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="318" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102724" i_stop="102811" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102812" g_stop="102905" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="412" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E243582" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100870" e_stop="100999"/>
          <exon e_start="101431" e_stop="101501"/>
          <exon e_start="102607" e_stop="102723"/>
          <exon e_start="102812" e_stop="102905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGGGTACGGTGGAGAGAATCACTAGCCCTCGTACCGTCTCTGCTTTCAAAGAAAAAGGTGTTCTCAGCGTCAGCGAATTCGTCATAGCTGGAGATAATCTCGTCTCCAAATGCCCTACCTGGTCTTGGTAATTTTGCTTTTCTGAATTAGATCTAATTTGAAAAAGTTGTTAATAATGTTAATTTTTCAAGGGCAACACTGGATTTTATATGTATATAGCCTTATTATTATGTTATATTTTGTTCCCGGTTGACATATGATCCAACTTGTTGGTCATTATCTTATATAATAGATTTAGAGTTTGTTTTGATGCTAAAGTGAAAATTGATTGATCGGACTATTGATTTCTCAAATCGTTGAAGGTTTATGCACTTTCACTTGATATGTTGATCAATTTTTTGATTTTAGAACATGACAAGAAAAAAGAGTGTGCTTTCCAGGATTTTATTTATGCATTGGTCAACCTAATGTTACGTTTTTCTGCTGCTTGTAAAGTTCTGATTGGATTTATTGCTGTTGCATCTAATTCTTATGTCATGGTTCATGATTCATTAACAGGGAATCAGGTGAGCCTAGTAAGAGGAAGTCTTATTTACCAGCCGACAAGCAATTTTTGATAACTAGAAATGGTATGTATCTACAACCATCATCCTGCTAGTAGTTTTCATAGAATTCAATCTGTTTAGGGATTATATGAGTTAGCCAAGTGATAGGTGCATGATGAATTCATTCTTTAACTTAATAGCTGATAAATTTACACTTTTTAACAGAATAACTCATTTAATTTAAGCTAAATTAATCCTTAAAATAAACAAAAAAACTAAGAAGTTCTGGTCAATAGTTGAAAGTTGACAGTCTTAACACATTTGATGTATCCATGTAACTTTTGGAGATGTTATCCTCATGTTAGATATCCATCATCATCAGAATCCAGAACTGATAATCTGTAATACTAACTTGTTAAACCTTTCTATGCAATTTCAAGAGCTTACTGAGAAAGGGAGGTTTAATAATCTAATATGAAGAACAATACTGATGCGTATGGATGTAGCCATGAGCTAAGGGAGCATGAGGACTCACATCTTTATTGTCCAACACATGTTATGCTCAGTGTCTTATTGTTTCAAGTGATATCATGATAACCTTGAGAAGTAACTATGAGGTTAGGAAATAGGACTAAGAACTGTATTGTCTAAGTCTCTAAGATATGTTACACACTGAATCTATGCGTTTCAGTCTGCTCCTTGTATATCAATTTAAGCATCTTGCTAAGGATGCTTCTGTTGCCTCGTGCTGTATCCTCTTCCAACCTAGCTCATTAATCTTCTCTTTGGAATTGGTAATTTTTATTTTATTTTGAGATTTCCAATCTTTAACGACTTCTTAAGAATTTTAGCACCCCATACCACTGAAAGAAGGTGGAACTATGTATGTTGTAGTTCTCTTGACCATTCTTTCAGAGATTTCTTTATTCATAGGCGTTCTCTACTTGTCTCATACTCTCATTTTAAAAAAAGCTGTCCGATGCACAAAGCAGCCTCGTTAGCTGGGTCGCACCCCAAGGATTGTGATGTAGAAAGCTTACCCTAATGCAAACATTAGTGGCTGCCTCCATGACTCAAACCCGTGACCTATAAGTCCCATGGTGACAACTTTACCGTTGCTCTAGGGCTCCACTTTAAACTTTTGTTATGTGTCAGCACAAGTGATGTGCCACTTTAACTTTGTACACAGTTCCTTGTCTGAGAAGAGCTGCATCAATAGAGGAAGAATATGAGGCTGCTGGAGGTGAAGTTCTTCTTGATAATGAAGATAATGATGGTTGGCTGGCAACTCATGGCAAACCAAAAGGTATCTAGTATATCAATACTTTCCAGTAACAAATTGAGTTTTATTTATCAATTTTGCCTCGTGACATTTCATCCCATTTATTTCTTAGAAAACAATGGTGCTGAGGATGATAATTTGCCATCTATAGACGCATCAGAAATCAACAAGAAGAACACTATCCAGTCAATCCCATCATACTTTGG</genome_strand>
        <mrna_strand>TCAAGGGTACGGTGGAGAGAATCACTAGCCCTCGTACCGTCTCTGCTTTCAAAGAAAAAGGTGTTCTCAGCGTCAGCGAATTCGTCATAGCTGGAGATAATCTCGTCTCCAAATGCCCTACCTGGTCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATCAGGTGAGCCTAGTAAGAGGAAGTCTTATTTACCAGCCGACAAGCAATTTTTGATAACTAGAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTTGTCTGAGAAGAGCTGCATCAATAGAGGAAGAATATGAGGCTGCTGGAGGTGAAGTTCTTCTTGATAATGAAGATAATGATGGTTGGCTGGCAACTCATGGCAAACCAAAAG........................................................................................AAAACAATGGTGCTGAGGATGATAATTTGCCATCTATAGACGCATCAGGAATCAACAAGAAGAACACTATCCAGTCAATCCCATCATACTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555402" ref_strand="+" ref_description="SGN-E555402 [cTSC-2-N4]">
      <seq>aggaagtcttatttaccagccgacaagcaatttttgataactagaaatgttccttgtctgagaagagctgcatcaatagaggaagaatatgaggctgctggaggtgaagttcttcttgataatgaagataatgatggttggctggcaactcatggcaaaccaaaagaaaacaatggtgctgaggatgataatttgccatctatagacgcatcagaaatcaacaagaagaacactatccagtcaatcccatcatactttggaggcgaggaagaggaggacatacctgacatgggagattatgaggaagctgacaatcttatagaaacagaccctgccacccttcagactacatatcttgtggccaatgagcctgatgatgacaacattctaagaacacgaacctatgatgtcagcatcacgtatgacaaatattatcaaacacctcgtgtgtggctcactggatatgatgagtcaaggatgcttttgcaaccagaactcgtacttgaagatgtcagtcaagaccatgcacgcaagacggtgaccattgaagaccatccacatcttccagggaaacatgcttctgtgcatccttgccgacatggggctgtgatgaagaaaattattgatgttttgatgttgagaggagttgaacccgaagttgacaagtatcttttcctgttcttgaagtttgtggcttcggttattccaacaattgaatatgattacaccatggactttgatcttggtagcagtagcacctgatttgctgtcaacttccttcgattgatgctggcatataacatgtcaaccagtcaaatactctaatggcaatacctatttataattgtacagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="101153" stop="109695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101453" g_stop="101501" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101502" i_stop="102606" i_length="1105">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102607" g_stop="102723" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="166" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102724" i_stop="102811" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102812" g_stop="102978" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="333" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102979" i_stop="103881" i_length="903">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103882" g_stop="103967" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="419" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103968" i_stop="104074" i_length="107">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104075" g_stop="104126" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="471" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104127" i_stop="105242" i_length="1116">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105243" g_stop="105308" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="537" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="105309" i_stop="106403" i_length="1095">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="106404" g_stop="106531" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="665" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="106532" i_stop="109130" i_length="2599">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="109131" g_stop="109247" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="782" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="109248" i_stop="109322" i_length="75">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="109323" g_stop="109395" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="854" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E555402" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101453" e_stop="101501"/>
          <exon e_start="102607" e_stop="102723"/>
          <exon e_start="102812" e_stop="102978"/>
          <exon e_start="103882" e_stop="103967"/>
          <exon e_start="104075" e_stop="104126"/>
          <exon e_start="105243" e_stop="105308"/>
          <exon e_start="106404" e_stop="106531"/>
          <exon e_start="109131" e_stop="109247"/>
          <exon e_start="109323" e_stop="109395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGTCTTATTTACCAGCCGACAAGCAATTTTTGATAACTAGAAATGGTATGTATCTACAACCATCATCCTGCTAGTAGTTTTCATAGAATTCAATCTGTTTAGGGATTATATGAGTTAGCCAAGTGATAGGTGCATGATGAATTCATTCTTTAACTTAATAGCTGATAAATTTACACTTTTTAACAGAATAACTCATTTAATTTAAGCTAAATTAATCCTTAAAATAAACAAAAAAACTAAGAAGTTCTGGTCAATAGTTGAAAGTTGACAGTCTTAACACATTTGATGTATCCATGTAACTTTTGGAGATGTTATCCTCATGTTAGATATCCATCATCATCAGAATCCAGAACTGATAATCTGTAATACTAACTTGTTAAACCTTTCTATGCAATTTCAAGAGCTTACTGAGAAAGGGAGGTTTAATAATCTAATATGAAGAACAATACTGATGCGTATGGATGTAGCCATGAGCTAAGGGAGCATGAGGACTCACATCTTTATTGTCCAACACATGTTATGCTCAGTGTCTTATTGTTTCAAGTGATATCATGATAACCTTGAGAAGTAACTATGAGGTTAGGAAATAGGACTAAGAACTGTATTGTCTAAGTCTCTAAGATATGTTACACACTGAATCTATGCGTTTCAGTCTGCTCCTTGTATATCAATTTAAGCATCTTGCTAAGGATGCTTCTGTTGCCTCGTGCTGTATCCTCTTCCAACCTAGCTCATTAATCTTCTCTTTGGAATTGGTAATTTTTATTTTATTTTGAGATTTCCAATCTTTAACGACTTCTTAAGAATTTTAGCACCCCATACCACTGAAAGAAGGTGGAACTATGTATGTTGTAGTTCTCTTGACCATTCTTTCAGAGATTTCTTTATTCATAGGCGTTCTCTACTTGTCTCATACTCTCATTTTAAAAAAAGCTGTCCGATGCACAAAGCAGCCTCGTTAGCTGGGTCGCACCCCAAGGATTGTGATGTAGAAAGCTTACCCTAATGCAAACATTAGTGGCTGCCTCCATGACTCAAACCCGTGACCTATAAGTCCCATGGTGACAACTTTACCGTTGCTCTAGGGCTCCACTTTAAACTTTTGTTATGTGTCAGCACAAGTGATGTGCCACTTTAACTTTGTACACAGTTCCTTGTCTGAGAAGAGCTGCATCAATAGAGGAAGAATATGAGGCTGCTGGAGGTGAAGTTCTTCTTGATAATGAAGATAATGATGGTTGGCTGGCAACTCATGGCAAACCAAAAGGTATCTAGTATATCAATACTTTCCAGTAACAAATTGAGTTTTATTTATCAATTTTGCCTCGTGACATTTCATCCCATTTATTTCTTAGAAAACAATGGTGCTGAGGATGATAATTTGCCATCTATAGACGCATCAGAAATCAACAAGAAGAACACTATCCAGTCAATCCCATCATACTTTGGAGGCGAGGAAGAGGAGGACATACCTGACATGGGAGATTATGAGGAAGCTGACAATCTTATAGAAACAGACCCTGTAAGAACTGTCTCTCGCTGAATGCATTATTGTTTTAAATCTGTGTAATCTTAACAGCGTATTGTTTCACGTTGTATTTGATCATAAAAAGTCCCACCACAATGGTTTCGTGCAGAGTCATGATCCAATCTGTTGGCTACTTGTCTCTAGTGGTTCATGCCCATAATCTAAAACTCCTGATGCTATTTCTTCATGGTCTTTGATAATGGATTTCTTGGTGCTCTGGTTGAGTTTATGTAAAAAAAATTCATTTCATTTGGTGAATTGTTCCTATAAGTGTCACTATCACCAACCAAATGCCTCTCCTTATAGTGTCCGTGATGTTTATAGTTAAATGTTCTGTTCTACTAATACTGTATTTTTGAAAAAGAGCTGTTTAAAACTGACCGTTTGTTATTGGTAGTTTTTAAACAGCTAAAGGCAGATACTGAATAGTTTAGAAGTGTAATGACTGCTCAGTCATTCCTCATTAGTGAGAAACTGTTAGCATCTCATTGCCCGAACATTGACCTGAGCAGGTGTACAGGATTTTAGAATAACTTGATGGGCTGATGGATCCTTTGGGAATCTTTCTTGATAAACAAGAAAAAGAATCCTTATTTCTTTTCCTTTTTGTACCCAATAGTTGCCTTCAATTTGACCTTTTTCCTGGTATAGTTTAAATAAGAAAATTCTATTTGGTACTGTTATATGCAAGGAAACTCTTTCCAAACTTTCTGGAAGCTGTCTTTCAGTTCAATGACCATTGGCTACATTCACATTCTTTTCCAAAATAAATAGAAAGAATGCTGCTCTGATCTTTGTTTGGGCTCAAAATTCAGTTTGTTGGATCTTTGTAAATTATCAGCTTTGAGATTATTCCATGTAGTACCAAAATGGTTAACTTCTCATGATTTACTGCAGGCCACCCTTCAGACTACATATCTTGTGGCCAATGAGCCTGATGATGACAACATTCTAAGAACACGAACCTATGATGTCAGCATCACGTAAGATTTCATTCATTAGCTTTTGTAATGTTGGCTATTTCATGCACTTCTGATTAAAGAGGAGTGCTAATAACTGTTACGCCAACTGTCCATATGTACTTTTGTAGGTATGACAAATATTATCAAACACCTCGTGTGTGGCTCACTGGATATGATGAGGTCAGTCAAAATAAAACCTCCTGTTATTGCCTTGAAGACTACTTTTTTCACCTTTTTCTTATAATGGAAAGAGTTGCAAGATGGTCCCGACAAATTCATGAAATAAATAACTTAGTAACCATACATTTGAAGAAATGGATGATACAGCGAGAGCTCACCTGGATTTATGGGTGTCCTCTTTTAGCCGGGGGGGGGGTAGTGGAAATTGTTTTTTTCCTGTTGCCTCAGGTGGAACTCTGTCAGCTCGAATAATTTAAGAGTGCTATATTATCTTTTCTTTCTGATATCACTTTCTTTATGTGCTCAGTAAACACTGACCTTCTCATTATGCTATATTATACATTATTCTTAGTCTTATCCAAATATGGGAATGCAATATTTTGTCAATGTAAGTAAATGTGATACTTAACATGAGGTTATTTTTCTCTTCATATTACACGCAAAAAAAATCTTTGTGCTCATTTCTAAGCAAAGCATGCTTCACTCTTCTTAGTCCTAATTCTGTTCACACTATGCAACATCTGCACAAAGATGAAATTTTGAACCAATGTGGTTCTCCTTGTCGAAATTTGTTGAGATCCCACATAAGTAGAGGGATGGTAATCTCCTTATATGGACCTGGACAAACCTCCTCTCATGAGCTGGCTTTTGGGGTTGAGTTAGGCCCAGGTGCCATATCTTTATGTTGTTCACCGATGTTGGCCCCCATTTAGAATTGTTCACGTTCTAGTTGAGGTCTGGGCGTGCGAGGAGTGTTGACAGGTCCCATTTCGGTAGAGGGATAGGTATTCATTCTCCTTGTATGGACTTTGACAAACCTTCCTTCATGAGCTAGCTTTTGGGGTGAGTTAGGCCCAAGTGCCATATCTTTACAAAATTCACTGAAGTTTCTATTCCTAAGATACTTGGAAAGATCCTTGTACAATGTATTTCCATTAAATGTTGCTTTCAGAAAAAGTTCCTCTCTTGTTTAGATATGCATCGTGGTCTTTTGGGGAACTTCATGTCTGATTGCAATACAGTACACTATAAGTTTATGCATCTGTGAGGGGTGATCTTTTTCCGTAATAATATTCGTCATGTGCAGTAAGCACTATTTTTGATTTTATGTGACAGTCAAGGATGCTTTTGCAACCAGAACTCGTACTTGAAGATGTCAGTCAAGACCATGCACGCAAGACGGTGAGATACATCTTTTAAGTCTTAATGTATTTGGGGACAAACTTAAATGGGTTTCTCCTTACTGTTGTTTGTTTGTAAATGAAATTGCAGTAGTTGGTCCAAGCAATGTAGAACATTGCTCCTTGTCTAATTTCTTGAGAAGTTCTAACCCAGATGGTATTGTTGTTTGCTTTGCAATCTCAGGGCTGTGTATTATTCAGTTACAAGGAAGAAACTCACTTAGTGAATCAGTTTCAGCTTACCTGTTTTTAGTTATTGCACACATCCATGCCAACCTTTAAATAAGAAATTGCATATGATGGTGTGGTGAGGGTTTTTGAAGTTATCCATTAACTGTGTGAAAAATATAATATCCTGCAAAACCTATATCAAACATGGTCTGGTAGTTTGGTCATAAGTGGTTGGATTCTTTCTTGCTAATTGGCATCTGGAAATCAAGTCCAAGTGCATGCATTCAACTTATCAACTTTTCCCCATGTTATTCTCTTTATCATTGTTGTTCTTTTATTTAAATTTTGTTGTTCTTTTATTTAAATTTAAATTTTGAAGTGAAAACTAAATGTGGCATAGTTTGTCAAAAGTTTGTTGCTTATACCTTTACTTCCTTCCCCACTACAACCACTTGCCTCCTCTGAACTCAGAGCCTTGCCGCCTAATTGGATAGCAATCAAACATTCCTAAAGACACTCTCTATCCCTTTCTTCCCCATCTCTTCTCTCCTACAAGCTTCCAATTGAACCATATTCTAAGAAATTCAACTAATGAGGCAATGATTTGTTTCACATTTGACCACTATAACTCTTTTCAAGGCCCTCTTGTTCCTTATACACAATAGAGCTTGAATGCTTGCTTTGATGCGATATCTATTCAGTACAAATCCAAACCCACCAAGGACTATTTCGGTTGACGAGCACTATCCATTTTAGCTGACTAAAACTTTTGTTCATGAACCAAATTGTAGATCTAAGCAACTGAATGAACTGTCACTTTGTTATCAACTTCCTTTCCTTTATAGCCCTTTCTCTTATTTAACTACTACAACTATTTTGTCGATGAATTCATTTTAATCTTTCCTTCTCAACATTGTTAACTCAGGTGACCATTGAAGACCATCCACATCTTCCAGGGAAACATGCTTCTGTGCATCCTTGCCGACATGGGGCTGTGATGAAGAAAATTATTGATGTTTTGATGTTGAGAGGAGTTGAACCCGAAGTTGACAAGTACACTCTAATTTCTTTTCTAGTATCCTTGTGTTTTCCATTAAGCACTATGCATAGTTGCACTTACATAAGACACATACGATCTGTTTACATGGGGATACTTGGGGAACATTTATTTCTGTTCGCATGTTTCATTCAAAGAGCTATACTATGCAGGGACGAACCAGAGGGAGGTTCTGTTCATTGTGGCATTTGTTTTTCAGGAAAGTTGATGCTTTGGCATTCAATTTTTAGGGATTCACTGGTGTCTCCCGTAATTGGTCTTCGCATTTAAAAACAATGAGAAGGTTTCCTGCTGCTGCAGCAGCATATTTTAGCTGTGGTAGACATGGAAGCAGTATCAGTAATAATGACTGAGACATTGTTTCAATCCTACCCTCCTCCATCTAGCTTTTATCAATGACCTCAAGTTATTAATTTGACAAATGGAGGAGTATACTTTTGGCTTCAATGGAATATTTTGGAACAAGAACTAAGTTGCGCGGGCTCTTCACTTTTGATGCCATACCCGTGTCTGATTCTCCAAAAATACTCTACTTTTGGAGAATCAAACACGCCACGTTGACATTTTTGAAGAGTCTGAGCAACATAGACAAGAATCATTATTGATACTTCTATTCAAGTGAATTTAATTCCAATACTTATTTTAAGAGTCAGGATTTCTCCAAATCTAAGTTACCCTTGTGTGGTTAATTGATTAATCTCAACTAGTTTGTATCGCCTACATGGGATACTTTCTTTTTATTGCGTTAAGTTTTTGTTAAGTCTATTGATGCAAAGTGATCTTTTATCTTTCTCATTCCTTTTATGAGCTTAAATCATCATTTTTAACACCTAATAATGGTGCATTGGAAGGTTCGCGTAGGACACGAGCTAACTATCTAACCCGATCTCTCATTTTATCCTCTATGTTTACTACTTGCACCATCTGTCTGATGTAATTATTTCAAATCTTGTCATATTTTGTACGGTCGTACATCCAATTTGATATTCACATTCTACAACAGTCATCTTATGGATCTGTTGGGCCTTGAAGGGCAAGTCTCCCATATTACATTATAGGTCTCACAAAAACTTGCTTTCCATCTTGTTAGGTATCTTTTTATAGTGTAACAAAACTTATGTGAAACTCCTCTATCGTTTTTTGATAATTGAGAGTCTCCTTAAGGTTTAGATGGCCCAGCTACAGTTGGCTGTATAGGTTTGAAACTCAGAGGGGTATGTGCAGCTCCTCTATCATCCTCCCATTTCAATACCGGGCTTTGGTCCTCATGGGTTCAAACTTGTGATGTGTGCACACACTCACAAATATACTGACTTTTACTGTTGAGCCAAATCCCTGGGATGTAAGATATTACACATAATCAAAATTGGATGGTTAAAATGGAGAGTGCCCTGGGTATTCTATAATAGCTAACAATGTGAAAGGTAAGTCTATAGAACAGTTGTAAGACTAGCAATGTTGAGTGAATATTGGACTGTTCAACACATCCTCAAGATGAGTGTTTCAGAGATGCAAATGGCTGGATGGATGTGCGTTATGAGATCAGACAAGATAAGAAATGACTACAATTGGCCTGAAGGTGCACTCACTACACGTGAGGTAAAATGAGGGGTCATTTGAGATGGTTTGGTCATGTGTAAAATGAGGGGTCATTTGAGATGGTTTGGTCATGTCCTAACTCGACCTCTATATGCACCGGTCCTTAGGTGTGAAGTTATGTAAAGTGAAGATGCTTGGGTAGATCTAAAATCACATGGAAGGAGGTTGCCTTGAAAGACTTGCCATCTTTTGAAATCAATGCGGACTTAACGAAAAATAGAGAATAATAGAAGGAAATGATTTCTATAAGCAAATAATACCGATTAGATGAGAATATACTTTAGTCATTTGTATGTAGCACACATTTAGGTCTTACGCTTTCTAGGAATCTCTTAGCGCTGTTAGAGATTATTATGCCAGTGGGAAATATAGAAACTTATGTTACTTTCCATATACTTATAAAAAATTCTTATATTGCTGTTGGTCTGTGATGAATTTAAATGGAAACTATGGTTGGTGAGAATTCATATAGCCAATCCGAACTTGTTTAGGATTAAAGCGTAGTGTTGTTGTATATCATATCATCATGTTATAAACCCAAGCCTATATATCTGATATTACATTTAGGCACCACAGTCCATTTAATCTCACTTTATTTTCATCTATGGGAAGTACACTTGGAGTTATATGCTCAATTTTATTTCTACTTATCCTACGAAGTAGATGCAGTGTTCCTCGACAGTTTCAAGTTCTGGTTGACTTTCCTGCTATAGTCATGTTGTAGCCACTTAAAAGAAAGAAAATAAGAGGGTTTGTACCCAATGATAGTGATTTCGATGATTCTTACTGTAGCCGCTGATTCTTTCATTATCATCAAAGGTAATTCGAGTAAGCTTCCTGGAGTAAAATGTGCTTGTTTTAGACTGAAGATTTGAGACATATGTGACCCAACAACTTAAATGCACGAACTTCCTAAATTTGAATCTCCTTTTAGTTTCTCTACTTGCATCAGGTTTTTGTCTCCTCTTGAATGTTGATCTCAATCACCATTTGCAGGTATCTTTTCCTGTTCTTGAAGTTTGTGGCTTCGGTTATTCCAACAATTGAATATGATTACACCATGGACTTTGATCTTGGTAGCAGTAGCACCTGATTTGCTGTCAACTTCCTTCGGTCAGTAACAGTGGTAAAATTATTTTTTAGCCTAACTAGCAAAGATGATATGGATGTTGTATTTTGTTTTTTCAGATTGATGCTGGCATATAACATGTCAACCAGTCAAATACTCTAATGGCAATACCTATTTATAAATTGTACAGTA</genome_strand>
        <mrna_strand>AGGAAGTCTTATTTACCAGCCGACAAGCAATTTTTGATAACTAGAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTTGTCTGAGAAGAGCTGCATCAATAGAGGAAGAATATGAGGCTGCTGGAGGTGAAGTTCTTCTTGATAATGAAGATAATGATGGTTGGCTGGCAACTCATGGCAAACCAAAAG........................................................................................AAAACAATGGTGCTGAGGATGATAATTTGCCATCTATAGACGCATCAGAAATCAACAAGAAGAACACTATCCAGTCAATCCCATCATACTTTGGAGGCGAGGAAGAGGAGGACATACCTGACATGGGAGATTATGAGGAAGCTGACAATCTTATAGAAACAGACCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCCTTCAGACTACATATCTTGTGGCCAATGAGCCTGATGATGACAACATTCTAAGAACACGAACCTATGATGTCAGCATCAC...........................................................................................................GTATGACAAATATTATCAAACACCTCGTGTGTGGCTCACTGGATATGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGGATGCTTTTGCAACCAGAACTCGTACTTGAAGATGTCAGTCAAGACCATGCACGCAAGACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACCATTGAAGACCATCCACATCTTCCAGGGAAACATGCTTCTGTGCATCCTTGCCGACATGGGGCTGTGATGAAGAAAATTATTGATGTTTTGATGTTGAGAGGAGTTGAACCCGAAGTTGACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTTTTCCTGTTCTTGAAGTTTGTGGCTTCGGTTATTCCAACAATTGAATATGATTACACCATGGACTTTGATCTTGGTAGCAGTAGCACCTGATTTGCTGTCAACTTCCTTCG...........................................................................ATTGATGCTGGCATATAACATGTCAACCAGTCAAATACTCTAATGGCAATACCTATTTAT-AATTGTACAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238600" ref_strand="+" ref_description="SGN-E238600 [cLED-17-H20]">
      <seq>agaggaagaatatgaggctgctggaggtgaagttcttcttgataatgaagataatgatggttggctggcaactcatggcaaaccaaaagaaaacaatggtgctgaggatgataatttgccatctatagacgcatcagaaatcaacaagaagaacactatccagtcaatcccatcatactttggaggcgaggaagaggaggacatacctgacatgggagattatgaggaagctgacaatcttatagaaacagaccctgccacccttcagactacatatcttgtggccaatgagcctgatgatgacaacattctaagaacacgaacctatgatgtcagcatcacgtatgacaaatattatcaaacacctcgtgtgtggctcactggatatgatgagtcaaggatgcttttgcaaccagaactcgtacttgaagatgtcagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102335" stop="105589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102635" g_stop="102723" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102724" i_stop="102811" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102812" g_stop="102978" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="256" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102979" i_stop="103881" i_length="903">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103882" g_stop="103967" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="342" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103968" i_stop="104074" i_length="107">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104075" g_stop="104126" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="394" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104127" i_stop="105242" i_length="1116">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105243" g_stop="105289" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="441" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E238600" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102635" e_stop="102723"/>
          <exon e_start="102812" e_stop="102978"/>
          <exon e_start="103882" e_stop="103967"/>
          <exon e_start="104075" e_stop="104126"/>
          <exon e_start="105243" e_stop="105289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGAAGAATATGAGGCTGCTGGAGGTGAAGTTCTTCTTGATAATGAAGATAATGATGGTTGGCTGGCAACTCATGGCAAACCAAAAGGTATCTAGTATATCAATACTTTCCAGTAACAAATTGAGTTTTATTTATCAATTTTGCCTCGTGACATTTCATCCCATTTATTTCTTAGAAAACAATGGTGCTGAGGATGATAATTTGCCATCTATAGACGCATCAGAAATCAACAAGAAGAACACTATCCAGTCAATCCCATCATACTTTGGAGGCGAGGAAGAGGAGGACATACCTGACATGGGAGATTATGAGGAAGCTGACAATCTTATAGAAACAGACCCTGTAAGAACTGTCTCTCGCTGAATGCATTATTGTTTTAAATCTGTGTAATCTTAACAGCGTATTGTTTCACGTTGTATTTGATCATAAAAAGTCCCACCACAATGGTTTCGTGCAGAGTCATGATCCAATCTGTTGGCTACTTGTCTCTAGTGGTTCATGCCCATAATCTAAAACTCCTGATGCTATTTCTTCATGGTCTTTGATAATGGATTTCTTGGTGCTCTGGTTGAGTTTATGTAAAAAAAATTCATTTCATTTGGTGAATTGTTCCTATAAGTGTCACTATCACCAACCAAATGCCTCTCCTTATAGTGTCCGTGATGTTTATAGTTAAATGTTCTGTTCTACTAATACTGTATTTTTGAAAAAGAGCTGTTTAAAACTGACCGTTTGTTATTGGTAGTTTTTAAACAGCTAAAGGCAGATACTGAATAGTTTAGAAGTGTAATGACTGCTCAGTCATTCCTCATTAGTGAGAAACTGTTAGCATCTCATTGCCCGAACATTGACCTGAGCAGGTGTACAGGATTTTAGAATAACTTGATGGGCTGATGGATCCTTTGGGAATCTTTCTTGATAAACAAGAAAAAGAATCCTTATTTCTTTTCCTTTTTGTACCCAATAGTTGCCTTCAATTTGACCTTTTTCCTGGTATAGTTTAAATAAGAAAATTCTATTTGGTACTGTTATATGCAAGGAAACTCTTTCCAAACTTTCTGGAAGCTGTCTTTCAGTTCAATGACCATTGGCTACATTCACATTCTTTTCCAAAATAAATAGAAAGAATGCTGCTCTGATCTTTGTTTGGGCTCAAAATTCAGTTTGTTGGATCTTTGTAAATTATCAGCTTTGAGATTATTCCATGTAGTACCAAAATGGTTAACTTCTCATGATTTACTGCAGGCCACCCTTCAGACTACATATCTTGTGGCCAATGAGCCTGATGATGACAACATTCTAAGAACACGAACCTATGATGTCAGCATCACGTAAGATTTCATTCATTAGCTTTTGTAATGTTGGCTATTTCATGCACTTCTGATTAAAGAGGAGTGCTAATAACTGTTACGCCAACTGTCCATATGTACTTTTGTAGGTATGACAAATATTATCAAACACCTCGTGTGTGGCTCACTGGATATGATGAGGTCAGTCAAAATAAAACCTCCTGTTATTGCCTTGAAGACTACTTTTTTCACCTTTTTCTTATAATGGAAAGAGTTGCAAGATGGTCCCGACAAATTCATGAAATAAATAACTTAGTAACCATACATTTGAAGAAATGGATGATACAGCGAGAGCTCACCTGGATTTATGGGTGTCCTCTTTTAGCCGGGGGGGGGGTAGTGGAAATTGTTTTTTTCCTGTTGCCTCAGGTGGAACTCTGTCAGCTCGAATAATTTAAGAGTGCTATATTATCTTTTCTTTCTGATATCACTTTCTTTATGTGCTCAGTAAACACTGACCTTCTCATTATGCTATATTATACATTATTCTTAGTCTTATCCAAATATGGGAATGCAATATTTTGTCAATGTAAGTAAATGTGATACTTAACATGAGGTTATTTTTCTCTTCATATTACACGCAAAAAAAATCTTTGTGCTCATTTCTAAGCAAAGCATGCTTCACTCTTCTTAGTCCTAATTCTGTTCACACTATGCAACATCTGCACAAAGATGAAATTTTGAACCAATGTGGTTCTCCTTGTCGAAATTTGTTGAGATCCCACATAAGTAGAGGGATGGTAATCTCCTTATATGGACCTGGACAAACCTCCTCTCATGAGCTGGCTTTTGGGGTTGAGTTAGGCCCAGGTGCCATATCTTTATGTTGTTCACCGATGTTGGCCCCCATTTAGAATTGTTCACGTTCTAGTTGAGGTCTGGGCGTGCGAGGAGTGTTGACAGGTCCCATTTCGGTAGAGGGATAGGTATTCATTCTCCTTGTATGGACTTTGACAAACCTTCCTTCATGAGCTAGCTTTTGGGGTGAGTTAGGCCCAAGTGCCATATCTTTACAAAATTCACTGAAGTTTCTATTCCTAAGATACTTGGAAAGATCCTTGTACAATGTATTTCCATTAAATGTTGCTTTCAGAAAAAGTTCCTCTCTTGTTTAGATATGCATCGTGGTCTTTTGGGGAACTTCATGTCTGATTGCAATACAGTACACTATAAGTTTATGCATCTGTGAGGGGTGATCTTTTTCCGTAATAATATTCGTCATGTGCAGTAAGCACTATTTTTGATTTTATGTGACAGTCAAGGATGCTTTTGCAACCAGAACTCGTACTTGAAGATGTCAGTCA</genome_strand>
        <mrna_strand>AGAGGAAGAATATGAGGCTGCTGGAGGTGAAGTTCTTCTTGATAATGAAGATAATGATGGTTGGCTGGCAACTCATGGCAAACCAAAAG........................................................................................AAAACAATGGTGCTGAGGATGATAATTTGCCATCTATAGACGCATCAGAAATCAACAAGAAGAACACTATCCAGTCAATCCCATCATACTTTGGAGGCGAGGAAGAGGAGGACATACCTGACATGGGAGATTATGAGGAAGCTGACAATCTTATAGAAACAGACCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCCTTCAGACTACATATCTTGTGGCCAATGAGCCTGATGATGACAACATTCTAAGAACACGAACCTATGATGTCAGCATCAC...........................................................................................................GTATGACAAATATTATCAAACACCTCGTGTGTGGCTCACTGGATATGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGGATGCTTTTGCAACCAGAACTCGTACTTGAAGATGTCAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286967" ref_strand="+" ref_description="SGN-E286967 [cLES-6-C4]">
      <seq>cctgacatgggagattatgaggaagctgacaatcttatagaaacagaccctgccacccttcagactacatatcttgtggccaatgagcctgatgatgacaacattctaagaacacgaacctatgatgtcagcatcacgtatgacaaatattatcaaacacctcgtgtgtggctcactggatatgatgagtcaaggatgcttttgcaaccagaactcgtacttgaagatgtcagtcaagaccatgcacgcaagacggtgaccattgaagaccatccacatcttccagggaaacatgcttctgtgcatccttgccgacatggggctgtgatgaagaaaattattgatgttttgatgttgagaggagttgaacccgaagttgacaagtatcttttcctgttcttgaagtttgtggcttcggttattccaacaattgaatatgattacaccatggactttgatcttggtagcagtagcacctgatttgctgtcaacttccttcgattgatgctggcatataacatgtcaaccagtcaaatactctaatggcaatacctatttataaattgtacagtatttataaatgttcttctagaaatgtggagcatgcatgatgaatcgtcagcatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102628" stop="109750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102928" g_stop="102978" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102979" i_stop="103881" i_length="903">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103882" g_stop="103967" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="137" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103968" i_stop="104074" i_length="107">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104075" g_stop="104126" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="189" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104127" i_stop="105242" i_length="1116">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105243" g_stop="105308" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="255" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105309" i_stop="106403" i_length="1095">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106404" g_stop="106531" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="383" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106532" i_stop="109130" i_length="2599">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109131" g_stop="109247" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="500" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="109248" i_stop="109322" i_length="75">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="109323" g_stop="109450" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="628" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E286967" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102928" e_stop="102978"/>
          <exon e_start="103882" e_stop="103967"/>
          <exon e_start="104075" e_stop="104126"/>
          <exon e_start="105243" e_stop="105308"/>
          <exon e_start="106404" e_stop="106531"/>
          <exon e_start="109131" e_stop="109247"/>
          <exon e_start="109323" e_stop="109450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGACATGGGAGATTATGAGGAAGCTGACAATCTTATAGAAACAGACCCTGTAAGAACTGTCTCTCGCTGAATGCATTATTGTTTTAAATCTGTGTAATCTTAACAGCGTATTGTTTCACGTTGTATTTGATCATAAAAAGTCCCACCACAATGGTTTCGTGCAGAGTCATGATCCAATCTGTTGGCTACTTGTCTCTAGTGGTTCATGCCCATAATCTAAAACTCCTGATGCTATTTCTTCATGGTCTTTGATAATGGATTTCTTGGTGCTCTGGTTGAGTTTATGTAAAAAAAATTCATTTCATTTGGTGAATTGTTCCTATAAGTGTCACTATCACCAACCAAATGCCTCTCCTTATAGTGTCCGTGATGTTTATAGTTAAATGTTCTGTTCTACTAATACTGTATTTTTGAAAAAGAGCTGTTTAAAACTGACCGTTTGTTATTGGTAGTTTTTAAACAGCTAAAGGCAGATACTGAATAGTTTAGAAGTGTAATGACTGCTCAGTCATTCCTCATTAGTGAGAAACTGTTAGCATCTCATTGCCCGAACATTGACCTGAGCAGGTGTACAGGATTTTAGAATAACTTGATGGGCTGATGGATCCTTTGGGAATCTTTCTTGATAAACAAGAAAAAGAATCCTTATTTCTTTTCCTTTTTGTACCCAATAGTTGCCTTCAATTTGACCTTTTTCCTGGTATAGTTTAAATAAGAAAATTCTATTTGGTACTGTTATATGCAAGGAAACTCTTTCCAAACTTTCTGGAAGCTGTCTTTCAGTTCAATGACCATTGGCTACATTCACATTCTTTTCCAAAATAAATAGAAAGAATGCTGCTCTGATCTTTGTTTGGGCTCAAAATTCAGTTTGTTGGATCTTTGTAAATTATCAGCTTTGAGATTATTCCATGTAGTACCAAAATGGTTAACTTCTCATGATTTACTGCAGGCCACCCTTCAGACTACATATCTTGTGGCCAATGAGCCTGATGATGACAACATTCTAAGAACACGAACCTATGATGTCAGCATCACGTAAGATTTCATTCATTAGCTTTTGTAATGTTGGCTATTTCATGCACTTCTGATTAAAGAGGAGTGCTAATAACTGTTACGCCAACTGTCCATATGTACTTTTGTAGGTATGACAAATATTATCAAACACCTCGTGTGTGGCTCACTGGATATGATGAGGTCAGTCAAAATAAAACCTCCTGTTATTGCCTTGAAGACTACTTTTTTCACCTTTTTCTTATAATGGAAAGAGTTGCAAGATGGTCCCGACAAATTCATGAAATAAATAACTTAGTAACCATACATTTGAAGAAATGGATGATACAGCGAGAGCTCACCTGGATTTATGGGTGTCCTCTTTTAGCCGGGGGGGGGGTAGTGGAAATTGTTTTTTTCCTGTTGCCTCAGGTGGAACTCTGTCAGCTCGAATAATTTAAGAGTGCTATATTATCTTTTCTTTCTGATATCACTTTCTTTATGTGCTCAGTAAACACTGACCTTCTCATTATGCTATATTATACATTATTCTTAGTCTTATCCAAATATGGGAATGCAATATTTTGTCAATGTAAGTAAATGTGATACTTAACATGAGGTTATTTTTCTCTTCATATTACACGCAAAAAAAATCTTTGTGCTCATTTCTAAGCAAAGCATGCTTCACTCTTCTTAGTCCTAATTCTGTTCACACTATGCAACATCTGCACAAAGATGAAATTTTGAACCAATGTGGTTCTCCTTGTCGAAATTTGTTGAGATCCCACATAAGTAGAGGGATGGTAATCTCCTTATATGGACCTGGACAAACCTCCTCTCATGAGCTGGCTTTTGGGGTTGAGTTAGGCCCAGGTGCCATATCTTTATGTTGTTCACCGATGTTGGCCCCCATTTAGAATTGTTCACGTTCTAGTTGAGGTCTGGGCGTGCGAGGAGTGTTGACAGGTCCCATTTCGGTAGAGGGATAGGTATTCATTCTCCTTGTATGGACTTTGACAAACCTTCCTTCATGAGCTAGCTTTTGGGGTGAGTTAGGCCCAAGTGCCATATCTTTACAAAATTCACTGAAGTTTCTATTCCTAAGATACTTGGAAAGATCCTTGTACAATGTATTTCCATTAAATGTTGCTTTCAGAAAAAGTTCCTCTCTTGTTTAGATATGCATCGTGGTCTTTTGGGGAACTTCATGTCTGATTGCAATACAGTACACTATAAGTTTATGCATCTGTGAGGGGTGATCTTTTTCCGTAATAATATTCGTCATGTGCAGTAAGCACTATTTTTGATTTTATGTGACAGTCAAGGATGCTTTTGCAACCAGAACTCGTACTTGAAGATGTCAGTCAAGACCATGCACGCAAGACGGTGAGATACATCTTTTAAGTCTTAATGTATTTGGGGACAAACTTAAATGGGTTTCTCCTTACTGTTGTTTGTTTGTAAATGAAATTGCAGTAGTTGGTCCAAGCAATGTAGAACATTGCTCCTTGTCTAATTTCTTGAGAAGTTCTAACCCAGATGGTATTGTTGTTTGCTTTGCAATCTCAGGGCTGTGTATTATTCAGTTACAAGGAAGAAACTCACTTAGTGAATCAGTTTCAGCTTACCTGTTTTTAGTTATTGCACACATCCATGCCAACCTTTAAATAAGAAATTGCATATGATGGTGTGGTGAGGGTTTTTGAAGTTATCCATTAACTGTGTGAAAAATATAATATCCTGCAAAACCTATATCAAACATGGTCTGGTAGTTTGGTCATAAGTGGTTGGATTCTTTCTTGCTAATTGGCATCTGGAAATCAAGTCCAAGTGCATGCATTCAACTTATCAACTTTTCCCCATGTTATTCTCTTTATCATTGTTGTTCTTTTATTTAAATTTTGTTGTTCTTTTATTTAAATTTAAATTTTGAAGTGAAAACTAAATGTGGCATAGTTTGTCAAAAGTTTGTTGCTTATACCTTTACTTCCTTCCCCACTACAACCACTTGCCTCCTCTGAACTCAGAGCCTTGCCGCCTAATTGGATAGCAATCAAACATTCCTAAAGACACTCTCTATCCCTTTCTTCCCCATCTCTTCTCTCCTACAAGCTTCCAATTGAACCATATTCTAAGAAATTCAACTAATGAGGCAATGATTTGTTTCACATTTGACCACTATAACTCTTTTCAAGGCCCTCTTGTTCCTTATACACAATAGAGCTTGAATGCTTGCTTTGATGCGATATCTATTCAGTACAAATCCAAACCCACCAAGGACTATTTCGGTTGACGAGCACTATCCATTTTAGCTGACTAAAACTTTTGTTCATGAACCAAATTGTAGATCTAAGCAACTGAATGAACTGTCACTTTGTTATCAACTTCCTTTCCTTTATAGCCCTTTCTCTTATTTAACTACTACAACTATTTTGTCGATGAATTCATTTTAATCTTTCCTTCTCAACATTGTTAACTCAGGTGACCATTGAAGACCATCCACATCTTCCAGGGAAACATGCTTCTGTGCATCCTTGCCGACATGGGGCTGTGATGAAGAAAATTATTGATGTTTTGATGTTGAGAGGAGTTGAACCCGAAGTTGACAAGTACACTCTAATTTCTTTTCTAGTATCCTTGTGTTTTCCATTAAGCACTATGCATAGTTGCACTTACATAAGACACATACGATCTGTTTACATGGGGATACTTGGGGAACATTTATTTCTGTTCGCATGTTTCATTCAAAGAGCTATACTATGCAGGGACGAACCAGAGGGAGGTTCTGTTCATTGTGGCATTTGTTTTTCAGGAAAGTTGATGCTTTGGCATTCAATTTTTAGGGATTCACTGGTGTCTCCCGTAATTGGTCTTCGCATTTAAAAACAATGAGAAGGTTTCCTGCTGCTGCAGCAGCATATTTTAGCTGTGGTAGACATGGAAGCAGTATCAGTAATAATGACTGAGACATTGTTTCAATCCTACCCTCCTCCATCTAGCTTTTATCAATGACCTCAAGTTATTAATTTGACAAATGGAGGAGTATACTTTTGGCTTCAATGGAATATTTTGGAACAAGAACTAAGTTGCGCGGGCTCTTCACTTTTGATGCCATACCCGTGTCTGATTCTCCAAAAATACTCTACTTTTGGAGAATCAAACACGCCACGTTGACATTTTTGAAGAGTCTGAGCAACATAGACAAGAATCATTATTGATACTTCTATTCAAGTGAATTTAATTCCAATACTTATTTTAAGAGTCAGGATTTCTCCAAATCTAAGTTACCCTTGTGTGGTTAATTGATTAATCTCAACTAGTTTGTATCGCCTACATGGGATACTTTCTTTTTATTGCGTTAAGTTTTTGTTAAGTCTATTGATGCAAAGTGATCTTTTATCTTTCTCATTCCTTTTATGAGCTTAAATCATCATTTTTAACACCTAATAATGGTGCATTGGAAGGTTCGCGTAGGACACGAGCTAACTATCTAACCCGATCTCTCATTTTATCCTCTATGTTTACTACTTGCACCATCTGTCTGATGTAATTATTTCAAATCTTGTCATATTTTGTACGGTCGTACATCCAATTTGATATTCACATTCTACAACAGTCATCTTATGGATCTGTTGGGCCTTGAAGGGCAAGTCTCCCATATTACATTATAGGTCTCACAAAAACTTGCTTTCCATCTTGTTAGGTATCTTTTTATAGTGTAACAAAACTTATGTGAAACTCCTCTATCGTTTTTTGATAATTGAGAGTCTCCTTAAGGTTTAGATGGCCCAGCTACAGTTGGCTGTATAGGTTTGAAACTCAGAGGGGTATGTGCAGCTCCTCTATCATCCTCCCATTTCAATACCGGGCTTTGGTCCTCATGGGTTCAAACTTGTGATGTGTGCACACACTCACAAATATACTGACTTTTACTGTTGAGCCAAATCCCTGGGATGTAAGATATTACACATAATCAAAATTGGATGGTTAAAATGGAGAGTGCCCTGGGTATTCTATAATAGCTAACAATGTGAAAGGTAAGTCTATAGAACAGTTGTAAGACTAGCAATGTTGAGTGAATATTGGACTGTTCAACACATCCTCAAGATGAGTGTTTCAGAGATGCAAATGGCTGGATGGATGTGCGTTATGAGATCAGACAAGATAAGAAATGACTACAATTGGCCTGAAGGTGCACTCACTACACGTGAGGTAAAATGAGGGGTCATTTGAGATGGTTTGGTCATGTGTAAAATGAGGGGTCATTTGAGATGGTTTGGTCATGTCCTAACTCGACCTCTATATGCACCGGTCCTTAGGTGTGAAGTTATGTAAAGTGAAGATGCTTGGGTAGATCTAAAATCACATGGAAGGAGGTTGCCTTGAAAGACTTGCCATCTTTTGAAATCAATGCGGACTTAACGAAAAATAGAGAATAATAGAAGGAAATGATTTCTATAAGCAAATAATACCGATTAGATGAGAATATACTTTAGTCATTTGTATGTAGCACACATTTAGGTCTTACGCTTTCTAGGAATCTCTTAGCGCTGTTAGAGATTATTATGCCAGTGGGAAATATAGAAACTTATGTTACTTTCCATATACTTATAAAAAATTCTTATATTGCTGTTGGTCTGTGATGAATTTAAATGGAAACTATGGTTGGTGAGAATTCATATAGCCAATCCGAACTTGTTTAGGATTAAAGCGTAGTGTTGTTGTATATCATATCATCATGTTATAAACCCAAGCCTATATATCTGATATTACATTTAGGCACCACAGTCCATTTAATCTCACTTTATTTTCATCTATGGGAAGTACACTTGGAGTTATATGCTCAATTTTATTTCTACTTATCCTACGAAGTAGATGCAGTGTTCCTCGACAGTTTCAAGTTCTGGTTGACTTTCCTGCTATAGTCATGTTGTAGCCACTTAAAAGAAAGAAAATAAGAGGGTTTGTACCCAATGATAGTGATTTCGATGATTCTTACTGTAGCCGCTGATTCTTTCATTATCATCAAAGGTAATTCGAGTAAGCTTCCTGGAGTAAAATGTGCTTGTTTTAGACTGAAGATTTGAGACATATGTGACCCAACAACTTAAATGCACGAACTTCCTAAATTTGAATCTCCTTTTAGTTTCTCTACTTGCATCAGGTTTTTGTCTCCTCTTGAATGTTGATCTCAATCACCATTTGCAGGTATCTTTTCCTGTTCTTGAAGTTTGTGGCTTCGGTTATTCCAACAATTGAATATGATTACACCATGGACTTTGATCTTGGTAGCAGTAGCACCTGATTTGCTGTCAACTTCCTTCGGTCAGTAACAGTGGTAAAATTATTTTTTAGCCTAACTAGCAAAGATGATATGGATGTTGTATTTTGTTTTTTCAGATTGATGCTGGCATATAACATGTCAACCAGTCAAATACTCTAATGGCAATACCTATTTATAAATTGTACAGTATTTATAAATGTTCTTCTAGAAATGTGGAGCATGCATGATGAATCGTCAGCATGCC</genome_strand>
        <mrna_strand>CCTGACATGGGAGATTATGAGGAAGCTGACAATCTTATAGAAACAGACCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCCTTCAGACTACATATCTTGTGGCCAATGAGCCTGATGATGACAACATTCTAAGAACACGAACCTATGATGTCAGCATCAC...........................................................................................................GTATGACAAATATTATCAAACACCTCGTGTGTGGCTCACTGGATATGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGGATGCTTTTGCAACCAGAACTCGTACTTGAAGATGTCAGTCAAGACCATGCACGCAAGACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACCATTGAAGACCATCCACATCTTCCAGGGAAACATGCTTCTGTGCATCCTTGCCGACATGGGGCTGTGATGAAGAAAATTATTGATGTTTTGATGTTGAGAGGAGTTGAACCCGAAGTTGACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTTTTCCTGTTCTTGAAGTTTGTGGCTTCGGTTATTCCAACAATTGAATATGATTACACCATGGACTTTGATCTTGGTAGCAGTAGCACCTGATTTGCTGTCAACTTCCTTCG...........................................................................ATTGATGCTGGCATATAACATGTCAACCAGTCAAATACTCTAATGGCAATACCTATTTATAAATTGTACAGTATTTATAAATGTTCTTCTAGAAATGTGGAGCATGCATGATGAATCGTCAGCATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228377" ref_strand="+" ref_description="SGN-E228377 [cLED-3-L17]">
      <seq>gaactcgtacttgaagatgtcagtcaagaccatgcacgcaagacggtgaccattgaagaccatccacatcttccagggaaacatgcttctgtgcatccttgccgacatggggctgtgatgaagaaaattattgatgttttgatgttgagaggagttgaacccgaagttgacaagtatcttttcctgttcttgaagtttgtggcttcggttattccaacaattgaatatgattacaccatggactttgatcttggtagcagtagcacctgatttgctgtcaacttccttcgattgatgctggcatataacatgtcaaccagtcaaatactctaatggcaatacctatttataaattgtacagtatttataaatgttcttctagaaatgtggagcatgcatgatgaatcgtcagcatgccttgtttattttgtatattaacaaagaataaaggttattcaagtttgcactttgcacgatccactgcaaggctgaaattgtttatttaagttaaagttagcaggatgaaagctacatgaatagtaagtgatgatgtttgttttatgcatcaaatgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="104964" stop="109908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105264" g_stop="105308" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105309" i_stop="106403" i_length="1095">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106404" g_stop="106531" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="173" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106532" i_stop="109130" i_length="2599">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109131" g_stop="109247" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="290" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109248" i_stop="109322" i_length="75">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109323" g_stop="109608" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="576" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E228377" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105264" e_stop="105308"/>
          <exon e_start="106404" e_stop="106531"/>
          <exon e_start="109131" e_stop="109247"/>
          <exon e_start="109323" e_stop="109608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCGTACTTGAAGATGTCAGTCAAGACCATGCACGCAAGACGGTGAGATACATCTTTTAAGTCTTAATGTATTTGGGGACAAACTTAAATGGGTTTCTCCTTACTGTTGTTTGTTTGTAAATGAAATTGCAGTAGTTGGTCCAAGCAATGTAGAACATTGCTCCTTGTCTAATTTCTTGAGAAGTTCTAACCCAGATGGTATTGTTGTTTGCTTTGCAATCTCAGGGCTGTGTATTATTCAGTTACAAGGAAGAAACTCACTTAGTGAATCAGTTTCAGCTTACCTGTTTTTAGTTATTGCACACATCCATGCCAACCTTTAAATAAGAAATTGCATATGATGGTGTGGTGAGGGTTTTTGAAGTTATCCATTAACTGTGTGAAAAATATAATATCCTGCAAAACCTATATCAAACATGGTCTGGTAGTTTGGTCATAAGTGGTTGGATTCTTTCTTGCTAATTGGCATCTGGAAATCAAGTCCAAGTGCATGCATTCAACTTATCAACTTTTCCCCATGTTATTCTCTTTATCATTGTTGTTCTTTTATTTAAATTTTGTTGTTCTTTTATTTAAATTTAAATTTTGAAGTGAAAACTAAATGTGGCATAGTTTGTCAAAAGTTTGTTGCTTATACCTTTACTTCCTTCCCCACTACAACCACTTGCCTCCTCTGAACTCAGAGCCTTGCCGCCTAATTGGATAGCAATCAAACATTCCTAAAGACACTCTCTATCCCTTTCTTCCCCATCTCTTCTCTCCTACAAGCTTCCAATTGAACCATATTCTAAGAAATTCAACTAATGAGGCAATGATTTGTTTCACATTTGACCACTATAACTCTTTTCAAGGCCCTCTTGTTCCTTATACACAATAGAGCTTGAATGCTTGCTTTGATGCGATATCTATTCAGTACAAATCCAAACCCACCAAGGACTATTTCGGTTGACGAGCACTATCCATTTTAGCTGACTAAAACTTTTGTTCATGAACCAAATTGTAGATCTAAGCAACTGAATGAACTGTCACTTTGTTATCAACTTCCTTTCCTTTATAGCCCTTTCTCTTATTTAACTACTACAACTATTTTGTCGATGAATTCATTTTAATCTTTCCTTCTCAACATTGTTAACTCAGGTGACCATTGAAGACCATCCACATCTTCCAGGGAAACATGCTTCTGTGCATCCTTGCCGACATGGGGCTGTGATGAAGAAAATTATTGATGTTTTGATGTTGAGAGGAGTTGAACCCGAAGTTGACAAGTACACTCTAATTTCTTTTCTAGTATCCTTGTGTTTTCCATTAAGCACTATGCATAGTTGCACTTACATAAGACACATACGATCTGTTTACATGGGGATACTTGGGGAACATTTATTTCTGTTCGCATGTTTCATTCAAAGAGCTATACTATGCAGGGACGAACCAGAGGGAGGTTCTGTTCATTGTGGCATTTGTTTTTCAGGAAAGTTGATGCTTTGGCATTCAATTTTTAGGGATTCACTGGTGTCTCCCGTAATTGGTCTTCGCATTTAAAAACAATGAGAAGGTTTCCTGCTGCTGCAGCAGCATATTTTAGCTGTGGTAGACATGGAAGCAGTATCAGTAATAATGACTGAGACATTGTTTCAATCCTACCCTCCTCCATCTAGCTTTTATCAATGACCTCAAGTTATTAATTTGACAAATGGAGGAGTATACTTTTGGCTTCAATGGAATATTTTGGAACAAGAACTAAGTTGCGCGGGCTCTTCACTTTTGATGCCATACCCGTGTCTGATTCTCCAAAAATACTCTACTTTTGGAGAATCAAACACGCCACGTTGACATTTTTGAAGAGTCTGAGCAACATAGACAAGAATCATTATTGATACTTCTATTCAAGTGAATTTAATTCCAATACTTATTTTAAGAGTCAGGATTTCTCCAAATCTAAGTTACCCTTGTGTGGTTAATTGATTAATCTCAACTAGTTTGTATCGCCTACATGGGATACTTTCTTTTTATTGCGTTAAGTTTTTGTTAAGTCTATTGATGCAAAGTGATCTTTTATCTTTCTCATTCCTTTTATGAGCTTAAATCATCATTTTTAACACCTAATAATGGTGCATTGGAAGGTTCGCGTAGGACACGAGCTAACTATCTAACCCGATCTCTCATTTTATCCTCTATGTTTACTACTTGCACCATCTGTCTGATGTAATTATTTCAAATCTTGTCATATTTTGTACGGTCGTACATCCAATTTGATATTCACATTCTACAACAGTCATCTTATGGATCTGTTGGGCCTTGAAGGGCAAGTCTCCCATATTACATTATAGGTCTCACAAAAACTTGCTTTCCATCTTGTTAGGTATCTTTTTATAGTGTAACAAAACTTATGTGAAACTCCTCTATCGTTTTTTGATAATTGAGAGTCTCCTTAAGGTTTAGATGGCCCAGCTACAGTTGGCTGTATAGGTTTGAAACTCAGAGGGGTATGTGCAGCTCCTCTATCATCCTCCCATTTCAATACCGGGCTTTGGTCCTCATGGGTTCAAACTTGTGATGTGTGCACACACTCACAAATATACTGACTTTTACTGTTGAGCCAAATCCCTGGGATGTAAGATATTACACATAATCAAAATTGGATGGTTAAAATGGAGAGTGCCCTGGGTATTCTATAATAGCTAACAATGTGAAAGGTAAGTCTATAGAACAGTTGTAAGACTAGCAATGTTGAGTGAATATTGGACTGTTCAACACATCCTCAAGATGAGTGTTTCAGAGATGCAAATGGCTGGATGGATGTGCGTTATGAGATCAGACAAGATAAGAAATGACTACAATTGGCCTGAAGGTGCACTCACTACACGTGAGGTAAAATGAGGGGTCATTTGAGATGGTTTGGTCATGTGTAAAATGAGGGGTCATTTGAGATGGTTTGGTCATGTCCTAACTCGACCTCTATATGCACCGGTCCTTAGGTGTGAAGTTATGTAAAGTGAAGATGCTTGGGTAGATCTAAAATCACATGGAAGGAGGTTGCCTTGAAAGACTTGCCATCTTTTGAAATCAATGCGGACTTAACGAAAAATAGAGAATAATAGAAGGAAATGATTTCTATAAGCAAATAATACCGATTAGATGAGAATATACTTTAGTCATTTGTATGTAGCACACATTTAGGTCTTACGCTTTCTAGGAATCTCTTAGCGCTGTTAGAGATTATTATGCCAGTGGGAAATATAGAAACTTATGTTACTTTCCATATACTTATAAAAAATTCTTATATTGCTGTTGGTCTGTGATGAATTTAAATGGAAACTATGGTTGGTGAGAATTCATATAGCCAATCCGAACTTGTTTAGGATTAAAGCGTAGTGTTGTTGTATATCATATCATCATGTTATAAACCCAAGCCTATATATCTGATATTACATTTAGGCACCACAGTCCATTTAATCTCACTTTATTTTCATCTATGGGAAGTACACTTGGAGTTATATGCTCAATTTTATTTCTACTTATCCTACGAAGTAGATGCAGTGTTCCTCGACAGTTTCAAGTTCTGGTTGACTTTCCTGCTATAGTCATGTTGTAGCCACTTAAAAGAAAGAAAATAAGAGGGTTTGTACCCAATGATAGTGATTTCGATGATTCTTACTGTAGCCGCTGATTCTTTCATTATCATCAAAGGTAATTCGAGTAAGCTTCCTGGAGTAAAATGTGCTTGTTTTAGACTGAAGATTTGAGACATATGTGACCCAACAACTTAAATGCACGAACTTCCTAAATTTGAATCTCCTTTTAGTTTCTCTACTTGCATCAGGTTTTTGTCTCCTCTTGAATGTTGATCTCAATCACCATTTGCAGGTATCTTTTCCTGTTCTTGAAGTTTGTGGCTTCGGTTATTCCAACAATTGAATATGATTACACCATGGACTTTGATCTTGGTAGCAGTAGCACCTGATTTGCTGTCAACTTCCTTCGGTCAGTAACAGTGGTAAAATTATTTTTTAGCCTAACTAGCAAAGATGATATGGATGTTGTATTTTGTTTTTTCAGATTGATGCTGGCATATAACATGTCAACCAGTCAAATACTCTAATGGCAATACCTATTTATAAATTGTACAGTATTTATAAATGTTCTTCTAGAAATGTGGAGCATGCATGATGAATCGTCAGCATGCCTTGTTTATTTTGTATATTAACAAAGAATAAAGGTTATTCAAGTTTGCACTTTGCACGATCCACTGCAAGGCTGAAATTGTTTATTTAAGTTAAAGTTAGCAGGATGAAAGCTACATGAATAGTAAGTGATGATGTTTGTTTTATGCATCAAATGTCTA</genome_strand>
        <mrna_strand>GAACTCGTACTTGAAGATGTCAGTCAAGACCATGCACGCAAGACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACCATTGAAGACCATCCACATCTTCCAGGGAAACATGCTTCTGTGCATCCTTGCCGACATGGGGCTGTGATGAAGAAAATTATTGATGTTTTGATGTTGAGAGGAGTTGAACCCGAAGTTGACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTTTTCCTGTTCTTGAAGTTTGTGGCTTCGGTTATTCCAACAATTGAATATGATTACACCATGGACTTTGATCTTGGTAGCAGTAGCACCTGATTTGCTGTCAACTTCCTTCG...........................................................................ATTGATGCTGGCATATAACATGTCAACCAGTCAAATACTCTAATGGCAATACCTATTTATAAATTGTACAGTATTTATAAATGTTCTTCTAGAAATGTGGAGCATGCATGATGAATCGTCAGCATGCCTTGTTTATTTTGTATATTAACAAAGAATAAAGGTTATTCAAGTTTGCACTTTGCACGATCCACTGCAAGGCTGAAATTGTTTATTTAAGTTAAAGTTAGCAGGATGAAAGCTACATGAATAGTAAGTGATGATGTTTGTTTTATGCATCAAATGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221884" ref_strand="+" ref_description="SGN-E221884 [cLEL-10-N23](-)">
      <seq>cattgaagaccatccacatcttccagggaaacatgcttctgtgcatccttgccgacatggggctgtgatgaagaaaattattgatgttttgatgttgagaggagttgaacccgaagttgacaagtatcttttcctgttcttgaagtttgtggcttcggttattccaacaattgaatatgattacaccatggactttgatcttggtagcagtagcacctgatttgctgtcaacttccttcgattgatgctggcatataacatgtcaaccagtcaaatactctaatggcaatacctatttataaattgtacagtatttataaatgttcttctagaaatgtggagcatgcatgatgaatcgtcagcatgccttgtttattttgtatattaacaaagaataaaggttattcaagtttgcactttgcacgatccactgcaaggctgaaattgtttatttaagttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106109" stop="109844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106409" g_stop="106531" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106532" i_stop="109130" i_length="2599">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109131" g_stop="109247" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="240" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109248" i_stop="109322" i_length="75">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109323" g_stop="109544" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="462" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="463" polyA_stop="478"/>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E221884" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106409" e_stop="106531"/>
          <exon e_start="109131" e_stop="109247"/>
          <exon e_start="109323" e_stop="109544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGAAGACCATCCACATCTTCCAGGGAAACATGCTTCTGTGCATCCTTGCCGACATGGGGCTGTGATGAAGAAAATTATTGATGTTTTGATGTTGAGAGGAGTTGAACCCGAAGTTGACAAGTACACTCTAATTTCTTTTCTAGTATCCTTGTGTTTTCCATTAAGCACTATGCATAGTTGCACTTACATAAGACACATACGATCTGTTTACATGGGGATACTTGGGGAACATTTATTTCTGTTCGCATGTTTCATTCAAAGAGCTATACTATGCAGGGACGAACCAGAGGGAGGTTCTGTTCATTGTGGCATTTGTTTTTCAGGAAAGTTGATGCTTTGGCATTCAATTTTTAGGGATTCACTGGTGTCTCCCGTAATTGGTCTTCGCATTTAAAAACAATGAGAAGGTTTCCTGCTGCTGCAGCAGCATATTTTAGCTGTGGTAGACATGGAAGCAGTATCAGTAATAATGACTGAGACATTGTTTCAATCCTACCCTCCTCCATCTAGCTTTTATCAATGACCTCAAGTTATTAATTTGACAAATGGAGGAGTATACTTTTGGCTTCAATGGAATATTTTGGAACAAGAACTAAGTTGCGCGGGCTCTTCACTTTTGATGCCATACCCGTGTCTGATTCTCCAAAAATACTCTACTTTTGGAGAATCAAACACGCCACGTTGACATTTTTGAAGAGTCTGAGCAACATAGACAAGAATCATTATTGATACTTCTATTCAAGTGAATTTAATTCCAATACTTATTTTAAGAGTCAGGATTTCTCCAAATCTAAGTTACCCTTGTGTGGTTAATTGATTAATCTCAACTAGTTTGTATCGCCTACATGGGATACTTTCTTTTTATTGCGTTAAGTTTTTGTTAAGTCTATTGATGCAAAGTGATCTTTTATCTTTCTCATTCCTTTTATGAGCTTAAATCATCATTTTTAACACCTAATAATGGTGCATTGGAAGGTTCGCGTAGGACACGAGCTAACTATCTAACCCGATCTCTCATTTTATCCTCTATGTTTACTACTTGCACCATCTGTCTGATGTAATTATTTCAAATCTTGTCATATTTTGTACGGTCGTACATCCAATTTGATATTCACATTCTACAACAGTCATCTTATGGATCTGTTGGGCCTTGAAGGGCAAGTCTCCCATATTACATTATAGGTCTCACAAAAACTTGCTTTCCATCTTGTTAGGTATCTTTTTATAGTGTAACAAAACTTATGTGAAACTCCTCTATCGTTTTTTGATAATTGAGAGTCTCCTTAAGGTTTAGATGGCCCAGCTACAGTTGGCTGTATAGGTTTGAAACTCAGAGGGGTATGTGCAGCTCCTCTATCATCCTCCCATTTCAATACCGGGCTTTGGTCCTCATGGGTTCAAACTTGTGATGTGTGCACACACTCACAAATATACTGACTTTTACTGTTGAGCCAAATCCCTGGGATGTAAGATATTACACATAATCAAAATTGGATGGTTAAAATGGAGAGTGCCCTGGGTATTCTATAATAGCTAACAATGTGAAAGGTAAGTCTATAGAACAGTTGTAAGACTAGCAATGTTGAGTGAATATTGGACTGTTCAACACATCCTCAAGATGAGTGTTTCAGAGATGCAAATGGCTGGATGGATGTGCGTTATGAGATCAGACAAGATAAGAAATGACTACAATTGGCCTGAAGGTGCACTCACTACACGTGAGGTAAAATGAGGGGTCATTTGAGATGGTTTGGTCATGTGTAAAATGAGGGGTCATTTGAGATGGTTTGGTCATGTCCTAACTCGACCTCTATATGCACCGGTCCTTAGGTGTGAAGTTATGTAAAGTGAAGATGCTTGGGTAGATCTAAAATCACATGGAAGGAGGTTGCCTTGAAAGACTTGCCATCTTTTGAAATCAATGCGGACTTAACGAAAAATAGAGAATAATAGAAGGAAATGATTTCTATAAGCAAATAATACCGATTAGATGAGAATATACTTTAGTCATTTGTATGTAGCACACATTTAGGTCTTACGCTTTCTAGGAATCTCTTAGCGCTGTTAGAGATTATTATGCCAGTGGGAAATATAGAAACTTATGTTACTTTCCATATACTTATAAAAAATTCTTATATTGCTGTTGGTCTGTGATGAATTTAAATGGAAACTATGGTTGGTGAGAATTCATATAGCCAATCCGAACTTGTTTAGGATTAAAGCGTAGTGTTGTTGTATATCATATCATCATGTTATAAACCCAAGCCTATATATCTGATATTACATTTAGGCACCACAGTCCATTTAATCTCACTTTATTTTCATCTATGGGAAGTACACTTGGAGTTATATGCTCAATTTTATTTCTACTTATCCTACGAAGTAGATGCAGTGTTCCTCGACAGTTTCAAGTTCTGGTTGACTTTCCTGCTATAGTCATGTTGTAGCCACTTAAAAGAAAGAAAATAAGAGGGTTTGTACCCAATGATAGTGATTTCGATGATTCTTACTGTAGCCGCTGATTCTTTCATTATCATCAAAGGTAATTCGAGTAAGCTTCCTGGAGTAAAATGTGCTTGTTTTAGACTGAAGATTTGAGACATATGTGACCCAACAACTTAAATGCACGAACTTCCTAAATTTGAATCTCCTTTTAGTTTCTCTACTTGCATCAGGTTTTTGTCTCCTCTTGAATGTTGATCTCAATCACCATTTGCAGGTATCTTTTCCTGTTCTTGAAGTTTGTGGCTTCGGTTATTCCAACAATTGAATATGATTACACCATGGACTTTGATCTTGGTAGCAGTAGCACCTGATTTGCTGTCAACTTCCTTCGGTCAGTAACAGTGGTAAAATTATTTTTTAGCCTAACTAGCAAAGATGATATGGATGTTGTATTTTGTTTTTTCAGATTGATGCTGGCATATAACATGTCAACCAGTCAAATACTCTAATGGCAATACCTATTTATAAATTGTACAGTATTTATAAATGTTCTTCTAGAAATGTGGAGCATGCATGATGAATCGTCAGCATGCCTTGTTTATTTTGTATATTAACAAAGAATAAAGGTTATTCAAGTTTGCACTTTGCACGATCCACTGCAAGGCTGAAATTGTTTATTTAAGTTAAA</genome_strand>
        <mrna_strand>CATTGAAGACCATCCACATCTTCCAGGGAAACATGCTTCTGTGCATCCTTGCCGACATGGGGCTGTGATGAAGAAAATTATTGATGTTTTGATGTTGAGAGGAGTTGAACCCGAAGTTGACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTTTTCCTGTTCTTGAAGTTTGTGGCTTCGGTTATTCCAACAATTGAATATGATTACACCATGGACTTTGATCTTGGTAGCAGTAGCACCTGATTTGCTGTCAACTTCCTTCG...........................................................................ATTGATGCTGGCATATAACATGTCAACCAGTCAAATACTCTAATGGCAATACCTATTTATAAATTGTACAGTATTTATAAATGTTCTTCTAGAAATGTGGAGCATGCATGATGAATCGTCAGCATGCCTTGTTTATTTTGTATATTAACAAAGAATAAAGGTTATTCAAGTTTGCACTTTGCACGATCCACTGCAAGGCTGAAATTGTTTATTTAAGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221651" ref_strand="+" ref_description="SGN-E221651 [cLEL-10-N23](-)">
      <seq>gaccatccacatcttccangaaacatgcttctgtgcatccttgccgacatggggctgtgatgaagaaaattattgatgttttgatgttgagaggagttgaacccgaagttgacaagtatcttttcctgttcttgaagtttgtggcttcggttattccaacaattgaatatgattacaccatggactttgatcttggtagcagtagcacctgatttgctgtcaacttccttcgattgatgctggcatataacatgtcaaccagtcaaatactctaatggcaatacctatttataaattgtacagtatttataaatgttcttctagaaatgtggagcatgcatgatgaatcgtcagcatgccttgtttattttgtatattaacaaagaataaaggttattcaagtttgcactttgcacgatccactgcaaggctgaaattgtttatttaagttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106116" stop="109844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106416" g_stop="106531" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106532" i_stop="109130" i_length="2599">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109131" g_stop="109247" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="232" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109248" i_stop="109322" i_length="75">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109323" g_stop="109544" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="454" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="455" polyA_stop="470"/>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E221651" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106416" e_stop="106531"/>
          <exon e_start="109131" e_stop="109247"/>
          <exon e_start="109323" e_stop="109544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCATCCACATCTTCCAGGGAAACATGCTTCTGTGCATCCTTGCCGACATGGGGCTGTGATGAAGAAAATTATTGATGTTTTGATGTTGAGAGGAGTTGAACCCGAAGTTGACAAGTACACTCTAATTTCTTTTCTAGTATCCTTGTGTTTTCCATTAAGCACTATGCATAGTTGCACTTACATAAGACACATACGATCTGTTTACATGGGGATACTTGGGGAACATTTATTTCTGTTCGCATGTTTCATTCAAAGAGCTATACTATGCAGGGACGAACCAGAGGGAGGTTCTGTTCATTGTGGCATTTGTTTTTCAGGAAAGTTGATGCTTTGGCATTCAATTTTTAGGGATTCACTGGTGTCTCCCGTAATTGGTCTTCGCATTTAAAAACAATGAGAAGGTTTCCTGCTGCTGCAGCAGCATATTTTAGCTGTGGTAGACATGGAAGCAGTATCAGTAATAATGACTGAGACATTGTTTCAATCCTACCCTCCTCCATCTAGCTTTTATCAATGACCTCAAGTTATTAATTTGACAAATGGAGGAGTATACTTTTGGCTTCAATGGAATATTTTGGAACAAGAACTAAGTTGCGCGGGCTCTTCACTTTTGATGCCATACCCGTGTCTGATTCTCCAAAAATACTCTACTTTTGGAGAATCAAACACGCCACGTTGACATTTTTGAAGAGTCTGAGCAACATAGACAAGAATCATTATTGATACTTCTATTCAAGTGAATTTAATTCCAATACTTATTTTAAGAGTCAGGATTTCTCCAAATCTAAGTTACCCTTGTGTGGTTAATTGATTAATCTCAACTAGTTTGTATCGCCTACATGGGATACTTTCTTTTTATTGCGTTAAGTTTTTGTTAAGTCTATTGATGCAAAGTGATCTTTTATCTTTCTCATTCCTTTTATGAGCTTAAATCATCATTTTTAACACCTAATAATGGTGCATTGGAAGGTTCGCGTAGGACACGAGCTAACTATCTAACCCGATCTCTCATTTTATCCTCTATGTTTACTACTTGCACCATCTGTCTGATGTAATTATTTCAAATCTTGTCATATTTTGTACGGTCGTACATCCAATTTGATATTCACATTCTACAACAGTCATCTTATGGATCTGTTGGGCCTTGAAGGGCAAGTCTCCCATATTACATTATAGGTCTCACAAAAACTTGCTTTCCATCTTGTTAGGTATCTTTTTATAGTGTAACAAAACTTATGTGAAACTCCTCTATCGTTTTTTGATAATTGAGAGTCTCCTTAAGGTTTAGATGGCCCAGCTACAGTTGGCTGTATAGGTTTGAAACTCAGAGGGGTATGTGCAGCTCCTCTATCATCCTCCCATTTCAATACCGGGCTTTGGTCCTCATGGGTTCAAACTTGTGATGTGTGCACACACTCACAAATATACTGACTTTTACTGTTGAGCCAAATCCCTGGGATGTAAGATATTACACATAATCAAAATTGGATGGTTAAAATGGAGAGTGCCCTGGGTATTCTATAATAGCTAACAATGTGAAAGGTAAGTCTATAGAACAGTTGTAAGACTAGCAATGTTGAGTGAATATTGGACTGTTCAACACATCCTCAAGATGAGTGTTTCAGAGATGCAAATGGCTGGATGGATGTGCGTTATGAGATCAGACAAGATAAGAAATGACTACAATTGGCCTGAAGGTGCACTCACTACACGTGAGGTAAAATGAGGGGTCATTTGAGATGGTTTGGTCATGTGTAAAATGAGGGGTCATTTGAGATGGTTTGGTCATGTCCTAACTCGACCTCTATATGCACCGGTCCTTAGGTGTGAAGTTATGTAAAGTGAAGATGCTTGGGTAGATCTAAAATCACATGGAAGGAGGTTGCCTTGAAAGACTTGCCATCTTTTGAAATCAATGCGGACTTAACGAAAAATAGAGAATAATAGAAGGAAATGATTTCTATAAGCAAATAATACCGATTAGATGAGAATATACTTTAGTCATTTGTATGTAGCACACATTTAGGTCTTACGCTTTCTAGGAATCTCTTAGCGCTGTTAGAGATTATTATGCCAGTGGGAAATATAGAAACTTATGTTACTTTCCATATACTTATAAAAAATTCTTATATTGCTGTTGGTCTGTGATGAATTTAAATGGAAACTATGGTTGGTGAGAATTCATATAGCCAATCCGAACTTGTTTAGGATTAAAGCGTAGTGTTGTTGTATATCATATCATCATGTTATAAACCCAAGCCTATATATCTGATATTACATTTAGGCACCACAGTCCATTTAATCTCACTTTATTTTCATCTATGGGAAGTACACTTGGAGTTATATGCTCAATTTTATTTCTACTTATCCTACGAAGTAGATGCAGTGTTCCTCGACAGTTTCAAGTTCTGGTTGACTTTCCTGCTATAGTCATGTTGTAGCCACTTAAAAGAAAGAAAATAAGAGGGTTTGTACCCAATGATAGTGATTTCGATGATTCTTACTGTAGCCGCTGATTCTTTCATTATCATCAAAGGTAATTCGAGTAAGCTTCCTGGAGTAAAATGTGCTTGTTTTAGACTGAAGATTTGAGACATATGTGACCCAACAACTTAAATGCACGAACTTCCTAAATTTGAATCTCCTTTTAGTTTCTCTACTTGCATCAGGTTTTTGTCTCCTCTTGAATGTTGATCTCAATCACCATTTGCAGGTATCTTTTCCTGTTCTTGAAGTTTGTGGCTTCGGTTATTCCAACAATTGAATATGATTACACCATGGACTTTGATCTTGGTAGCAGTAGCACCTGATTTGCTGTCAACTTCCTTCGGTCAGTAACAGTGGTAAAATTATTTTTTAGCCTAACTAGCAAAGATGATATGGATGTTGTATTTTGTTTTTTCAGATTGATGCTGGCATATAACATGTCAACCAGTCAAATACTCTAATGGCAATACCTATTTATAAATTGTACAGTATTTATAAATGTTCTTCTAGAAATGTGGAGCATGCATGATGAATCGTCAGCATGCCTTGTTTATTTTGTATATTAACAAAGAATAAAGGTTATTCAAGTTTGCACTTTGCACGATCCACTGCAAGGCTGAAATTGTTTATTTAAGTTAAA</genome_strand>
        <mrna_strand>GACCATCCACATCTTCCA-NGAAACATGCTTCTGTGCATCCTTGCCGACATGGGGCTGTGATGAAGAAAATTATTGATGTTTTGATGTTGAGAGGAGTTGAACCCGAAGTTGACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTTTTCCTGTTCTTGAAGTTTGTGGCTTCGGTTATTCCAACAATTGAATATGATTACACCATGGACTTTGATCTTGGTAGCAGTAGCACCTGATTTGCTGTCAACTTCCTTCG...........................................................................ATTGATGCTGGCATATAACATGTCAACCAGTCAAATACTCTAATGGCAATACCTATTTATAAATTGTACAGTATTTATAAATGTTCTTCTAGAAATGTGGAGCATGCATGATGAATCGTCAGCATGCCTTGTTTATTTTGTATATTAACAAAGAATAAAGGTTATTCAAGTTTGCACTTTGCACGATCCACTGCAAGGCTGAAATTGTTTATTTAAGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E218222" ref_strand="+" ref_description="SGN-E218222 [cLEL-23-I15](-)">
      <seq>gtagcagtagcacctgatttgctgtcaacttccttcgattgatgctggcatataacatgtcaaccagtcaaatactctaatggcaatacctatttataaattgtacagtatttataaatgttcttctagaaatgtggagcatgcatgatgaatcgtcagcatgccttgtttattttgtatattaacaaagaataaaggttattcaagtttgcactttgcacgatccactgcaaggctgaaattgtttatttaagttaaagttagcaggatgaaagctacatgaatagtaagtgatgatgtttgttttatgcatcaaatgtctaggaatagcataaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="108911" stop="109923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109211" g_stop="109247" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109248" i_stop="109322" i_length="75">
            <donor d_prob="0.795" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109323" g_stop="109622" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="337" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="338" polyA_stop="358"/>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E218222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109211" e_stop="109247"/>
          <exon e_start="109323" e_stop="109622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCAGTAGCACCTGATTTGCTGTCAACTTCCTTCGGTCAGTAACAGTGGTAAAATTATTTTTTAGCCTAACTAGCAAAGATGATATGGATGTTGTATTTTGTTTTTTCAGATTGATGCTGGCATATAACATGTCAACCAGTCAAATACTCTAATGGCAATACCTATTTATAAATTGTACAGTATTTATAAATGTTCTTCTAGAAATGTGGAGCATGCATGATGAATCGTCAGCATGCCTTGTTTATTTTGTATATTAACAAAGAATAAAGGTTATTCAAGTTTGCACTTTGCACGATCCACTGCAAGGCTGAAATTGTTTATTTAAGTTAAAGTTAGCAGGATGAAAGCTACATGAATAGTAAGTGATGATGTTTGTTTTATGCATCAAATGTCTAGGAATAGCATAAAA</genome_strand>
        <mrna_strand>GTAGCAGTAGCACCTGATTTGCTGTCAACTTCCTTCG...........................................................................ATTGATGCTGGCATATAACATGTCAACCAGTCAAATACTCTAATGGCAATACCTATTTATAAATTGTACAGTATTTATAAATGTTCTTCTAGAAATGTGGAGCATGCATGATGAATCGTCAGCATGCCTTGTTTATTTTGTATATTAACAAAGAATAAAGGTTATTCAAGTTTGCACTTTGCACGATCCACTGCAAGGCTGAAATTGTTTATTTAAGTTAAAGTTAGCAGGATGAAAGCTACATGAATAGTAAGTGATGATGTTTGTTTTATGCATCAAATGTCTAGGAATAGCATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217866" ref_strand="+" ref_description="SGN-E217866 [cLEL-23-I15](-)">
      <seq>aaataacatgtcaaccagtcaaatactctaatggcaaaacctatttataaattgtacagtatttataaatgttcttctagaaatgtggagcatgcatgataaatcgtcagcatgccttgtttattttgtatattaacaaagaataaaggttattcaagtttgccctttgcacgatccactgcaaggctaaaattgtttatttaagttaaagttagcaggatgaaagctacatgaatagtaagtgatgatgtttgttttatgcatcaaatgtctaggaatagcataaaaaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109035" stop="109925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109335" g_stop="109622" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="292" polyA_stop="308"/>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E217866" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109335" e_stop="109622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAACATGTCAACCAGTCAAATACTCTAATGGCAATACCTATTTATAAATTGTACAGTATTTATAAATGTTCTTCTAGAAATGTGGAGCATGCATGATGAATCGTCAGCATGCCTTGTTTATTTTGTATATTAACAAAGAATAAAGGTTATTCAAGTTTGCACTTTGCACGATCCACTGCAAGGCTGAAATTGTTTATTTAAGTTAAAGTTAGCAGGATGAAAGCTACATGAATAGTAAGTGATGATGTTTGTTTTATGCATCAAATGTCTAGGAATAGCATAAAA</genome_strand>
        <mrna_strand>AAATAACATGTCAACCAGTCAAATACTCTAATGGCAAAACCTATTTATAAATTGTACAGTATTTATAAATGTTCTTCTAGAAATGTGGAGCATGCATGATAAATCGTCAGCATGCCTTGTTTATTTTGTATATTAACAAAGAATAAAGGTTATTCAAGTTTGCCCTTTGCACGATCCACTGCAAGGCTAAAATTGTTTATTTAAGTTAAAGTTAGCAGGATGAAAGCTACATGAATAGTAAGTGATGATGTTTGTTTTATGCATCAAATGTCTAGGAATAGCATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389582" ref_strand="+" ref_description="SGN-E389582 [TUS-4-H6](-)">
      <seq>agaaatgtggagcatgcatgatgaatcgtcagcatgccttgtttattttgtatattaacaaagaataaaggttattcaagtttgcactttgcacgatccactgcaaggctgaaattgtttatttaagttaaagttagcaggatgaaagctacatgaatagtaagtgatgatgtttgttttatgcatcaaatgtctaggaatagcataaaaatctccattttactatttcccttcatatttcaaatattaataagactgtaggtatagatgcatttacacaattttagagctgcattgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0295L11-16IW4/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0295L11.1" temp_strand="+" temp_description="C06HBa0295L11.1  AC211070.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0295L11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109113" stop="110012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109413" g_stop="109712" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0295L11.1" gen_strand="+" ref_id="SGN-E389582" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0295L11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109413" e_stop="109712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGTGGAGCATGCATGATGAATCGTCAGCATGCCTTGTTTATTTTGTATATTAACAAAGAATAAAGGTTATTCAAGTTTGCACTTTGCACGATCCACTGCAAGGCTGAAATTGTTTATTTAAGTTAAAGTTAGCAGGATGAAAGCTACATGAATAGTAAGTGATGATGTTTGTTTTATGCATCAAATGTCTAGGAATAGCATAAAAATCTCCATTTTACTATTTCCCTTCATATTTCAAATATTAATAAGACTGTAAATATAGATGCATTTACACAATTTTAGAGTTGCATTGTTT</genome_strand>
        <mrna_strand>AGAAATGTGGAGCATGCATGATGAATCGTCAGCATGCCTTGTTTATTTTGTATATTAACAAAGAATAAAGGTTATTCAAGTTTGCACTTTGCACGATCCACTGCAAGGCTGAAATTGTTTATTTAAGTTAAAGTTAGCAGGATGAAAGCTACATGAATAGTAAGTGATGATGTTTGTTTTATGCATCAAATGTCTAGGAATAGCATAAAAATCTCCATTTTACTATTTCCCTTCATATTTCAAATATTAATAAGACTGTAGGTATAGATGCATTTACACAATTTTAGAGCTGCATTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>40</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1" PGL_stop="3385"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1" e_stop="134"/>
            <exon e_start="3058" e_stop="3385"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1" e_stop="134" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="135" i_stop="3057" i_length="2923"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3058" e_stop="3385" e_length="328"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="134"/>
              <exon start="3058" stop="3385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287442" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCTTTATCAAGAAGTTCTGAAGCTGGGATTCAAAGTTTTCTTGCTGACTGGGCGCAGTGAAAGACACAGAAGTGTTACTGTGGAGAATTTGATGAATGCTGGATTCCACGATTGGCACAAGCTCATTCTAAG : AGGCTCGGACGACCATGGCAAAACAGCAACAACCTATAAATCAGAGAGACGAAATGAGATGGTAGAAGAAGGTTTCCGCATAGTGGGCAACTCAGGAGACCAATGGAGTGATCTGCTAGGCTCCTCTATGACTTATCGCTCATTCAAGCTTCCAAACCCGATGTATTACATTCTTTAAAGTAACTAATAGGTTTGGTAGTCCATGTTGATGCAACATGCCAATGATTATTTCTTTTCACTGCAATGGAACTGTAATTCTTATAATCCCTTAAACTGGAGATCATTGATGATTCAATTAATGTATGCCGTAGCAGCAACAATTGTGCAT</gDNA_template>
            <first_frame> K  L  Y  Q  E  V  L  K  L  G  F  K  V  F  L  L  T  G  R  S  E  R  H  R  S  V  T  V  E  N  L  M  N  A  G  F  H  D  W  H  K  L  I  L  R :   G  S  D  D  H  G  K  T  A  T  T  Y  K  S  E  R  R  N  E  M  V  E  E  G  F  R  I  V  G  N  S  G  D  Q  W  S  D  L  L  G  S  S  M  T  Y  R  S  F  K  L  P  N  P  M  Y  Y  I  L  *  S  N  *  *  V  W  *  S  M  L  M  Q  H  A  N  D  Y  F  F  S  L  Q  W  N  C  N  S  Y  N  P  L  N  W  R  S  L  M  I  Q  L  M  Y  A  V  A  A  T  I  V  H </first_frame>
            <second_frame>  S  F  I  K  K  F  *  S  W  D  S  K  F  S  C  *  L  G  A  V  K  D  T  E  V  L  L  W  R  I  *  *  M  L  D  S  T  I  G  T  S  S  F  *   : E  A  R  T  T  M  A  K  Q  Q  Q  P  I  N  Q  R  D  E  M  R  W  *  K  K  V  S  A  *  W  A  T  Q  E  T  N  G  V  I  C  *  A  P  L  *  L  I  A  H  S  S  F  Q  T  R  C  I  T  F  F  K  V  T  N  R  F  G  S  P  C  *  C  N  M  P  M  I  I  S  F  H  C  N  G  T  V  I  L  I  I  P  *  T  G  D  H  *  *  F  N  *  C  M  P  *  Q  Q  Q  L  C   </second_frame>
            <third_frame>   A  L  S  R  S  S  E  A  G  I  Q  S  F  L  A  D  W  A  Q  *  K  T  Q  K  C  Y  C  G  E  F  D  E  C  W  I  P  R  L  A  Q  A  H  S  K  :  R  L  G  R  P  W  Q  N  S  N  N  L  *  I  R  E  T  K  *  D  G  R  R  R  F  P  H  S  G  Q  L  R  R  P  M  E  *  S  A  R  L  L  Y  D  L  S  L  I  Q  A  S  K  P  D  V  L  H  S  L  K  *  L  I  G  L  V  V  H  V  D  A  T  C  Q  *  L  F  L  F  T  A  M  E  L  *  F  L  *  S  L  K  L  E  I  I  D  D  S  I  N  V  C  R  S  S  N  N  C  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0295L11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1" stop="134"/>
                    <exon start="3058" stop="3235"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLYQEVLKLGFKVFLLTGRSERHRSVTVENLMNAGFHDWHKLILRGSDDHGKTATTYKSERRNEMVEEGFRIVGNSGDQWSDLLGSSMTYRSFKLPNPMYYIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="1266" PGL_stop="661"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1266" e_stop="661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="1266" e_stop="661" e_length="606"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1266" stop="752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="896" stop="661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGATAATGATGATGCCTTGGTATGAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGTATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATTGAGGAGTGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTGTGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTATTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGTCAATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTG</gDNA_template>
            <first_frame> P  N  L  L  *  *  *  *  C  L  G  M  K  E  G  L  M  N  E  S  S  E  I  R  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  V  *  N  M  D  R  V  P  R  S  G  T  R  I  V  Y  *  G  V  E  C  H  V  P  T  R  G  E  *  R  *  *  I  L  K  Y  D  N  I  S  N  L  M  N  *  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  Y  C  N  Q  G  L  W  *  L  *  M  L  H  V  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  P  I  L  S  W  S  M  I  S  T  Q  Y  P  W  F  V  L  T  P  T  F  M  F  F  F  L  L  F  V </first_frame>
            <second_frame>  L  I  Y  F  D  N  D  D  A  L  V  *  K  K  A  *  *  M  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  Y  R  I  W  I  G  C  H  V  P  V  P  G  *  Y  I  E  E  W  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  *  N  M  I  I  Y  P  I  *  *  T  K  F  P  N  E  C  D  E  E  V  *  V  L  I  D  V  L  G  I  V  T  K  G  Y  G  N  Y  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  T  Y  C  S  L  F  *  V  G  Q  *  Y  L  L  S  T  R  G  L  Y  *  P  L  L  L  C  F  S  S  C  Y  L   </second_frame>
            <third_frame>   *  S  T  L  I  M  M  M  P  W  Y  E  R  R  L  D  E  *  K  *  *  D  *  G  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  S  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  S  I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  L  E  I  *  *  Y  I  Q  S  N  E  L  N  S  Q  M  S  V  M  R  R  C  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  I  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  H  T  V  P  Y  F  E  L  V  N  D  I  Y  S  V  P  V  V  C  T  D  P  Y  F  Y  V  F  L  L  V  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0295L11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="4431" PGL_stop="11667"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4431" e_stop="4672"/>
            <exon e_start="7977" e_stop="8118"/>
            <exon e_start="8994" e_stop="9220"/>
            <exon e_start="10749" e_stop="11006"/>
            <exon e_start="11390" e_stop="11667"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.926" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4431" e_stop="4672" e_length="242"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4673" i_stop="7976" i_length="3304"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7977" e_stop="8118" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.965">
            <gDNA_intron_boundary i_start="8119" i_stop="8993" i_length="875"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8994" e_stop="9220" e_length="227"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9221" i_stop="10748" i_length="1528"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10749" e_stop="11006" e_length="258"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.926">
            <gDNA_intron_boundary i_start="11007" i_stop="11389" i_length="383"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="11390" e_stop="11667" e_length="278"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4431" stop="4672"/>
              <exon start="7977" stop="8118"/>
              <exon start="8994" stop="9220"/>
              <exon start="10749" stop="10987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4471" stop="4672"/>
              <exon start="7977" stop="8118"/>
              <exon start="8994" stop="9220"/>
              <exon start="10749" stop="10913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4607" stop="4672"/>
              <exon start="7977" stop="8118"/>
              <exon start="8994" stop="9220"/>
              <exon start="10749" stop="11006"/>
              <exon start="11390" stop="11616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10954" stop="11006"/>
              <exon start="11390" stop="11667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290194" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGAATCTGGCACCTCTGTTGATTGACAAATAATGCGATTAACTTCACTTCGTTGCTACAATCTTCTTCTACCTAATTCTTTCATTTCTCGCTTCACAAGAGCTATTACTACTAGTAATCAAAAAGGCCGCAAGTGTATTCCTTTACAAACAACTACTGTCAGATTAGCAGTAAGAGCTCACTCTGTATCACCAGCATCAATGGTCAAAGCCATTAGGGTTCATGAACTTGGTGGTCCTGAG : GTCCTCAAATGGGAGGACGTTGAACTGGGAGACCCAAAAGATGGAGAGATCAGGGTGAAGAATAAGGTCATTGGCCTCAACTTCATTGACATATATTTCCGGAAAGGAGTCTACAAAGCTGCTGCATTTCCCTTTACACCAG : GTATGGAGGCTGTAGGGGTTGTAACAGCTGTTGGTCCCGGATTGACTGGGAGGAAAGTTGGTGATATTGTTGCATATGCTGGTGGTGTGATGGGTGCATATGCTGAGGAACAGATCCTTCCTGCTGATAAAGTTGTGCCTGTTCCTCCCTCAATTGACCCCATTGTTGTAGCATCCATACTTCTCAAGGGCATGACTGCTCAGTTCCTACTGCGCCGCTGCTTCAAA : GTTGAACGTGGGCACGCAGTACTTGTTCATGCTGCAGCAGGTGGGGTTGGCTCCCTATTGTGCCAATGGGCAAATGCCCTTGGTGCTACAGTCATTGGGACTGTATCAACTAAAGAGAAAGCAGCCCAAGCTAAAGATGATGGGTGTCATCATGTCATAATCTATAAGGAAGAGGATTTCGTCACTCGTGTCAATGAGATCACATCTGGCCAAGGAGTTGAAGTTGTGTATGATTCTGTTGGAAAAGATACTTTTCAG : GGATCATTAGACTGCTTAAAAACTCGTGGATACATGGTGAGTTTTGGGCAGTCATCTGGCTCACCAGATCCAGTACCTTTATCAGCTCTTGCAGTGAAATCGCTATTTCTGACAAGGCCTAGCATGATGCACTACACAATGACGAGGGATGAACTACTAGAAACTGCCGGAGAGGTATTTGCTAATGTGGCATCAGGTGTCTTACGCGTCCGTGTGAATCATACTTATCCCCTGTCTCAGGCGGCACAAGCACATACCGACCTTGAGAGCAGGAAAAC</gDNA_template>
            <first_frame> G  N  L  A  P  L  L  I  D  K  *  C  D  *  L  H  F  V  A  T  I  F  F  Y  L  I  L  S  F  L  A  S  Q  E  L  L  L  L  V  I  K  K  A  A  S  V  F  L  Y  K  Q  L  L  S  D  *  Q  *  E  L  T  L  Y  H  Q  H  Q  W  S  K  P  L  G  F  M  N  L  V  V  L  R :   S  S  N  G  R  T  L  N  W  E  T  Q  K  M  E  R  S  G  *  R  I  R  S  L  A  S  T  S  L  T  Y  I  S  G  K  E  S  T  K  L  L  H  F  P  L  H  Q  :  V  W  R  L  *  G  L  *  Q  L  L  V  P  D  *  L  G  G  K  L  V  I  L  L  H  M  L  V  V  *  W  V  H  M  L  R  N  R  S  F  L  L  I  K  L  C  L  F  L  P  Q  L  T  P  L  L  *  H  P  Y  F  S  R  A  *  L  L  S  S  Y  C  A  A  A  S  K :   L  N  V  G  T  Q  Y  L  F  M  L  Q  Q  V  G  L  A  P  Y  C  A  N  G  Q  M  P  L  V  L  Q  S  L  G  L  Y  Q  L  K  R  K  Q  P  K  L  K  M  M  G  V  I  M  S  *  S  I  R  K  R  I  S  S  L  V  S  M  R  S  H  L  A  K  E  L  K  L  C  M  I  L  L  E  K  I  L  F  R :   D  H  *  T  A  *  K  L  V  D  T  W  *  V  L  G  S  H  L  A  H  Q  I  Q  Y  L  Y  Q  L  L  Q  *  N  R  Y  F  *  Q  G  L  A  *  C  T  T  Q  *  R  G  M  N  Y  *  K  L  P  E  R  Y  L  L  M  W  H  Q  V  S  Y  A  S  V  *  I  I  L  I  P  C  L  R  R  H  K  H  I  P  T  L  R  A  G  K  </first_frame>
            <second_frame>  G  I  W  H  L  C  *  L  T  N  N  A  I  N  F  T  S  L  L  Q  S  S  S  T  *  F  F  H  F  S  L  H  K  S  Y  Y  Y  *  *  S  K  R  P  Q  V  Y  S  F  T  N  N  Y  C  Q  I  S  S  K  S  S  L  C  I  T  S  I  N  G  Q  S  H  *  G  S  *  T  W  W  S  *   : G  P  Q  M  G  G  R  *  T  G  R  P  K  R  W  R  D  Q  G  E  E  *  G  H  W  P  Q  L  H  *  H  I  F  P  E  R  S  L  Q  S  C  C  I  S  L  Y  T  R :   Y  G  G  C  R  G  C  N  S  C  W  S  R  I  D  W  E  E  S  W  *  Y  C  C  I  C  W  W  C  D  G  C  I  C  *  G  T  D  P  S  C  *  *  S  C  A  C  S  S  L  N  *  P  H  C  C  S  I  H  T  S  Q  G  H  D  C  S  V  P  T  A  P  L  L  Q   : S  *  T  W  A  R  S  T  C  S  C  C  S  R  W  G  W  L  P  I  V  P  M  G  K  C  P  W  C  Y  S  H  W  D  C  I  N  *  R  E  S  S  P  S  *  R  *  W  V  S  S  C  H  N  L  *  G  R  G  F  R  H  S  C  Q  *  D  H  I  W  P  R  S  *  S  C  V  *  F  C  W  K  R  Y  F  S   : G  I  I  R  L  L  K  N  S  W  I  H  G  E  F  W  A  V  I  W  L  T  R  S  S  T  F  I  S  S  C  S  E  I  A  I  S  D  K  A  *  H  D  A  L  H  N  D  E  G  *  T  T  R  N  C  R  R  G  I  C  *  C  G  I  R  C  L  T  R  P  C  E  S  Y  L  S  P  V  S  G  G  T  S  T  Y  R  P  *  E  Q  E  N </second_frame>
            <third_frame>   E  S  G  T  S  V  D  *  Q  I  M  R  L  T  S  L  R  C  Y  N  L  L  L  P  N  S  F  I  S  R  F  T  R  A  I  T  T  S  N  Q  K  G  R  K  C  I  P  L  Q  T  T  T  V  R  L  A  V  R  A  H  S  V  S  P  A  S  M  V  K  A  I  R  V  H  E  L  G  G  P  E  :  V  L  K  W  E  D  V  E  L  G  D  P  K  D  G  E  I  R  V  K  N  K  V  I  G  L  N  F  I  D  I  Y  F  R  K  G  V  Y  K  A  A  A  F  P  F  T  P   : G  M  E  A  V  G  V  V  T  A  V  G  P  G  L  T  G  R  K  V  G  D  I  V  A  Y  A  G  G  V  M  G  A  Y  A  E  E  Q  I  L  P  A  D  K  V  V  P  V  P  P  S  I  D  P  I  V  V  A  S  I  L  L  K  G  M  T  A  Q  F  L  L  R  R  C  F  K  :  V  E  R  G  H  A  V  L  V  H  A  A  A  G  G  V  G  S  L  L  C  Q  W  A  N  A  L  G  A  T  V  I  G  T  V  S  T  K  E  K  A  A  Q  A  K  D  D  G  C  H  H  V  I  I  Y  K  E  E  D  F  V  T  R  V  N  E  I  T  S  G  Q  G  V  E  V  V  Y  D  S  V  G  K  D  T  F  Q  :  G  S  L  D  C  L  K  T  R  G  Y  M  V  S  F  G  Q  S  S  G  S  P  D  P  V  P  L  S  A  L  A  V  K  S  L  F  L  T  R  P  S  M  M  H  Y  T  M  T  R  D  E  L  L  E  T  A  G  E  V  F  A  N  V  A  S  G  V  L  R  V  R  V  N  H  T  Y  P  L  S  Q  A  A  Q  A  H  T  D  L  E  S  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0295L11.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4457" stop="4672"/>
                    <exon start="7977" stop="8118"/>
                    <exon start="8994" stop="9220"/>
                    <exon start="10749" stop="11006"/>
                    <exon start="11390" stop="11665"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1119</number_coding_nucleotides>
                  <number_encoded_amino_acids>373</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIMRLTSLRCYNLLLPNSFISRFTRAITTSNQKGRKCIPLQTTTVRLAVRAHSVSPASMVKAIRVHELGGPEVLKWEDVELGDPKDGEIRVKNKVIGLNFIDIYFRKGVYKAAAFPFTPGMEAVGVVTAVGPGLTGRKVGDIVAYAGGVMGAYAEEQILPADKVVPVPPSIDPIVVASILLKGMTAQFLLRRCFKVERGHAVLVHAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHHVIIYKEEDFVTRVNEITSGQGVEVVYDSVGKDTFQGSLDCLKTRGYMVSFGQSSGSPDPVPLSALAVKSLFLTRPSMMHYTMTRDELLETAGEVFANVASGVLRVRVNHTYPLSQAAQAHTDLESRK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="8524" e_stop="9220"/>
            <exon e_start="10749" e_stop="10859"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="8524" e_stop="9220" e_length="697"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9221" i_stop="10748" i_length="1528"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10749" e_stop="10859" e_length="111"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8524" stop="9220"/>
              <exon start="10749" stop="10859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701429" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGCCATTTAGCAATGATTCACAATGCAGTAGACTAAAGAGGTGAAGTAAATTAGATGCGTAAAGATTCTGCTTTACTGCAAGTCTGATCCATATACTTATCCAACCAAATAAATAGGGGGGATTGTGTACTTCTCATCATCACAATCGACACTTAATTAGTGAGGTTCTTGTTTTTTCTAGAGAGTATTTGTTTTTTGTGTATCAAGTTATCAACTGTGTGTATTTGTACGGTTTAACCCCTTTATCATCTCTTCGTCCTAGATTCTAAAATATGGAGTTACCAACTTTGTTTTTGTTTTGTCGGAGGAAAAACGATATTCAGTCAGGCCTATGGCTGGATCCTTTTAGATCTAGGGGCCGGCAGAACATGATAGAAGCGTTTCATTTATAAGGTATCGAAGATCATAGAAGTATTATTTAGGTAGCATTCAGTTGGAATTGAAGCTAGAATTAAATTCTTTATGCCAGGTATGGAGGCTGTAGGGGTTGTAACAGCTGTTGGTCCCGGATTGACTGGGAGGAAAGTTGGTGATATTGTTGCATATGCTGGTGGTGTGATGGGTGCATATGCTGAGGAACAGATCCTTCCTGCTGATAAAGTTGTGCCTGTTCCTCCCTCAATTGACCCCATTGTTGTAGCATCCATACTTCTCAAGGGCATGACTGCTCAGTTCCTACTGCGCCGCTGCTTCAAA : GTTGAACGTGGGCACGCAGTACTTGTTCATGCTGCAGCAGGTGGGGTTGGCTCCCTATTGTGCCAATGGGCAAATGCCCTTGGTGCTACAGTCATTGGGACTGTATCAACT</gDNA_template>
            <first_frame> L  P  F  S  N  D  S  Q  C  S  R  L  K  R  *  S  K  L  D  A  *  R  F  C  F  T  A  S  L  I  H  I  L  I  Q  P  N  K  *  G  G  L  C  T  S  H  H  H  N  R  H  L  I  S  E  V  L  V  F  S  R  E  Y  L  F  F  V  Y  Q  V  I  N  C  V  Y  L  Y  G  L  T  P  L  S  S  L  R  P  R  F  *  N  M  E  L  P  T  L  F  L  F  C  R  R  K  N  D  I  Q  S  G  L  W  L  D  P  F  R  S  R  G  R  Q  N  M  I  E  A  F  H  L  *  G  I  E  D  H  R  S  I  I  *  V  A  F  S  W  N  *  S  *  N  *  I  L  Y  A  R  Y  G  G  C  R  G  C  N  S  C  W  S  R  I  D  W  E  E  S  W  *  Y  C  C  I  C  W  W  C  D  G  C  I  C  *  G  T  D  P  S  C  *  *  S  C  A  C  S  S  L  N  *  P  H  C  C  S  I  H  T  S  Q  G  H  D  C  S  V  P  T  A  P  L  L  Q   : S  *  T  W  A  R  S  T  C  S  C  C  S  R  W  G  W  L  P  I  V  P  M  G  K  C  P  W  C  Y  S  H  W  D  C  I  N  </first_frame>
            <second_frame>  C  H  L  A  M  I  H  N  A  V  D  *  R  G  E  V  N  *  M  R  K  D  S  A  L  L  Q  V  *  S  I  Y  L  S  N  Q  I  N  R  G  D  C  V  L  L  I  I  T  I  D  T  *  L  V  R  F  L  F  F  L  E  S  I  C  F  L  C  I  K  L  S  T  V  C  I  C  T  V  *  P  L  Y  H  L  F  V  L  D  S  K  I  W  S  Y  Q  L  C  F  C  F  V  G  G  K  T  I  F  S  Q  A  Y  G  W  I  L  L  D  L  G  A  G  R  T  *  *  K  R  F  I  Y  K  V  S  K  I  I  E  V  L  F  R  *  H  S  V  G  I  E  A  R  I  K  F  F  M  P  G  M  E  A  V  G  V  V  T  A  V  G  P  G  L  T  G  R  K  V  G  D  I  V  A  Y  A  G  G  V  M  G  A  Y  A  E  E  Q  I  L  P  A  D  K  V  V  P  V  P  P  S  I  D  P  I  V  V  A  S  I  L  L  K  G  M  T  A  Q  F  L  L  R  R  C  F  K  :  V  E  R  G  H  A  V  L  V  H  A  A  A  G  G  V  G  S  L  L  C  Q  W  A  N  A  L  G  A  T  V  I  G  T  V  S  T </second_frame>
            <third_frame>   A  I  *  Q  *  F  T  M  Q  *  T  K  E  V  K  *  I  R  C  V  K  I  L  L  Y  C  K  S  D  P  Y  T  Y  P  T  K  *  I  G  G  I  V  Y  F  S  S  S  Q  S  T  L  N  *  *  G  S  C  F  F  *  R  V  F  V  F  C  V  S  S  Y  Q  L  C  V  F  V  R  F  N  P  F  I  I  S  S  S  *  I  L  K  Y  G  V  T  N  F  V  F  V  L  S  E  E  K  R  Y  S  V  R  P  M  A  G  S  F  *  I  *  G  P  A  E  H  D  R  S  V  S  F  I  R  Y  R  R  S  *  K  Y  Y  L  G  S  I  Q  L  E  L  K  L  E  L  N  S  L  C  Q  V  W  R  L  *  G  L  *  Q  L  L  V  P  D  *  L  G  G  K  L  V  I  L  L  H  M  L  V  V  *  W  V  H  M  L  R  N  R  S  F  L  L  I  K  L  C  L  F  L  P  Q  L  T  P  L  L  *  H  P  Y  F  S  R  A  *  L  L  S  S  Y  C  A  A  A  S  K :   L  N  V  G  T  Q  Y  L  F  M  L  Q  Q  V  G  L  A  P  Y  C  A  N  G  Q  M  P  L  V  L  Q  S  L  G  L  Y  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0295L11.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8951" stop="9220"/>
                    <exon start="10749" stop="10859"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSVGIEARIKFFMPGMEAVGVVTAVGPGLTGRKVGDIVAYAGGVMGAYAEEQILPADKVVPVPPSIDPIVVASILLKGMTAQFLLRRCFKVERGHAVLVHAAAGGVGSLLCQWANALGATVIGTVST</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="30204" PGL_stop="29762"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30204" e_stop="29762"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="30204" e_stop="29762" e_length="443"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30204" stop="29762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240420" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTCTCTCCATGTAAATCAAGATTTTTTTTAATTTCATTGTTAATCTTTATATTATTGTAGGATCGAATTTATTTTGTGGCATAACTCAACGAAGAAGGCTCTTGAATGTTAGTTTGCCAAAAGGGATGTCGGATAAGAGTAACAAAAATTGTGCATTGATTATACATTATTATTTTTATGTATTTTCTTATGATTAAGGTCCTAAGGAACTAAGAAAGATAGATGTGTTGTGTGTTCTCTCCATGTAACTCAAGATTATTTTTTTAATTTCATTGTTAATATTTATAAATATTATTATTATTATAGGATCACATTCATCTTTTAGCATAACTAGATGAAGAAGACTTTTAAATGTTGATTAGTCTGTCGAAAAGGATGTTGGACAAAAGTTCAAAAAAACTGTGCATCGATCTATATTTCAATTTTTCATTTATTTTCTT</gDNA_template>
            <first_frame> L  F  S  P  C  K  S  R  F  F  L  I  S  L  L  I  F  I  L  L  *  D  R  I  Y  F  V  A  *  L  N  E  E  G  S  *  M  L  V  C  Q  K  G  C  R  I  R  V  T  K  I  V  H  *  L  Y  I  I  I  F  M  Y  F  L  M  I  K  V  L  R  N  *  E  R  *  M  C  C  V  F  S  P  C  N  S  R  L  F  F  *  F  H  C  *  Y  L  *  I  L  L  L  L  *  D  H  I  H  L  L  A  *  L  D  E  E  D  F  *  M  L  I  S  L  S  K  R  M  L  D  K  S  S  K  K  L  C  I  D  L  Y  F  N  F  S  F  I  F   </first_frame>
            <second_frame>  C  S  L  H  V  N  Q  D  F  F  *  F  H  C  *  S  L  Y  Y  C  R  I  E  F  I  L  W  H  N  S  T  K  K  A  L  E  C  *  F  A  K  R  D  V  G  *  E  *  Q  K  L  C  I  D  Y  T  L  L  F  L  C  I  F  L  *  L  R  S  *  G  T  K  K  D  R  C  V  V  C  S  L  H  V  T  Q  D  Y  F  F  N  F  I  V  N  I  Y  K  Y  Y  Y  Y  Y  R  I  T  F  I  F  *  H  N  *  M  K  K  T  F  K  C  *  L  V  C  R  K  G  C  W  T  K  V  Q  K  N  C  A  S  I  Y  I  S  I  F  H  L  F  S  </second_frame>
            <third_frame>   V  L  S  M  *  I  K  I  F  F  N  F  I  V  N  L  Y  I  I  V  G  S  N  L  F  C  G  I  T  Q  R  R  R  L  L  N  V  S  L  P  K  G  M  S  D  K  S  N  K  N  C  A  L  I  I  H  Y  Y  F  Y  V  F  S  Y  D  *  G  P  K  E  L  R  K  I  D  V  L  C  V  L  S  M  *  L  K  I  I  F  L  I  S  L  L  I  F  I  N  I  I  I  I  I  G  S  H  S  S  F  S  I  T  R  *  R  R  L  L  N  V  D  *  S  V  E  K  D  V  G  Q  K  F  K  K  T  V  H  R  S  I  F  Q  F  F  I  Y  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0295L11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="53310" PGL_stop="53691"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53310" e_stop="53691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="53310" e_stop="53691" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53310" stop="53691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGTTTCAAAATACTTCAACTTTTGGAATCTGGGTACTGGGATAACTTTTCTGATCTTCACGACGAACCTGCAGGACAGACCGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTATGCTGCCACCTACGGACCGTCACAGGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTTCTGCAAAACAAAGAGAAACTTATATCAAAATTAGCACAAAAAGGCTTTCTGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAACCATGGTATATCA</gDNA_template>
            <first_frame> F  V  S  K  Y  F  N  F  W  N  L  G  T  G  I  T  F  L  I  F  T  T  N  L  Q  D  R  P  S  *  P  *  R  T  V  T  S  F  V  I  P  H  L  V  R  L  P  H  L  P  S  A  A  A  L  C  C  H  L  R  T  V  T  G  T  T  D  R  H  K  L  R  R  W  S  L  L  H  F  F  A  Q  N  L  R  I  Q  L  W  T  D  F  L  Q  N  K  E  K  L  I  S  K  L  A  Q  K  G  F  L  T  H  *  T  *  G  K  S  I  N  Y  T  V  K  P  W  Y  I  </first_frame>
            <second_frame>  S  F  Q  N  T  S  T  F  G  I  W  V  L  G  *  L  F  *  S  S  R  R  T  C  R  T  D  R  H  S  H  D  G  P  S  Q  A  S  *  S  H  T  W  S  D  F  P  I  F  L  Q  Q  L  H  Y  A  A  T  Y  G  P  S  Q  A  R  R  T  V  I  S  S  V  G  G  L  F  C  I  F  S  L  K  I  S  A  F  S  F  G  Q  I  F  C  K  T  K  R  N  L  Y  Q  N  *  H  K  K  A  F  *  H  T  K  L  K  E  K  V  L  I  I  P  *  N  H  G  I  S </second_frame>
            <third_frame>   R  F  K  I  L  Q  L  L  E  S  G  Y  W  D  N  F  S  D  L  H  D  E  P  A  G  Q  T  V  I  A  M  T  D  R  H  K  L  R  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  C  T  M  L  P  P  T  D  R  H  R  H  D  G  P  S  *  A  P  *  V  V  S  S  A  F  F  R  S  K  S  P  H  S  A  L  D  R  F  S  A  K  Q  R  E  T  Y  I  K  I  S  T  K  R  L  S  D  T  L  N  L  R  K  K  Y  *  L  Y  R  E  T  M  V  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0295L11.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53406" stop="53645"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTVTSFVIPHLVRLPHLPSAAALCCHLRTVTGTTDRHKLRRWSLLHFFAQNLRIQLWTDFLQNKEKLISKLAQKGFLTH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0295L11.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53312" stop="53518"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFKILQLLESGYWDNFSDLHDEPAGQTVIAMTDRHKLRNPTLGQTSPSSFSSCTMLPPTDRHRHDGPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="64947" PGL_stop="65499"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64947" e_stop="65499"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="64947" e_stop="65499" e_length="553"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64947" stop="65499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGGTACTAGGGTGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGAAAATGAGCAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATTAACCAGGTTCTTGCCTATCTTAGCGGGTTATCTGATCAAGGCCAAACACCTCCAGTGTTTTCTGCACCAGCACCTAATGTTCTGGAGGTACAACATGCAGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGGTTGACTACAGAGCCTATAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGTTATTACATAAAATGGGCATAGTGAAACGATTTGGTGTTGAGTTTGTAACCTATCAGTTTCAGGGAAATGCCAAAATGTGGTAGCGGTCACATGTTGAGTGTCAACCCGCACAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  W  Y  *  G  G  D  S  S  T  D  *  G  S  S  K  R  G  *  G  R  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  N  V  L  E  V  Q  H  A  A  T  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  E  P  I  M  T  S  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  K  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  *  R  S  H  V  E  C  Q  P  A  Q  A  P  P  M  T  W  A  S  F  </first_frame>
            <second_frame>  P  S  P  S  G  T  R  V  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  K  M  S  K  C  R  M  R  N  C  H  P  N  L  P  Q  R  *  L  T  R  F  L  P  I  L  A  G  Y  L  I  K  A  K  H  L  Q  C  F  L  H  Q  H  L  M  F  W  R  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  G  *  L  Q  S  L  *  *  Q  V  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  T  I  F  W  L  T  V  M  S  Y  Y  I  K  W  A  *  *  N  D  L  V  L  S  L  *  P  I  S  F  R  E  M  P  K  C  G  S  G  H  M  L  S  V  N  P  H  R  H  H  L  *  L  G  H  H  S </second_frame>
            <third_frame>   L  A  H  L  V  L  G  W  *  L  L  H  R  L  R  K  *  *  E  R  V  R  K  G  K  *  A  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  *  P  G  S  C  L  S  *  R  V  I  *  S  R  P  N  T  S  S  V  F  C  T  S  T  *  C  S  G  G  T  T  C  S  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  V  D  Y  R  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  V  I  T  *  N  G  H  S  E  T  I  W  C  *  V  C  N  L  S  V  S  G  K  C  Q  N  V  V  A  V  T  C  *  V  S  T  R  T  G  T  T  Y  D  L  G  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0295L11.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65013" stop="65441"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRENEQVQNEELPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPNVLEVQHAATVAPRMDASLEIGTFPRLTTEPIMTSDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVKRFGVEFVTYQFQGNAKMW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="66633" PGL_stop="66303"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66633" e_stop="66303"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="66633" e_stop="66303" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66633" stop="66303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCCAACGTTACAGTTTTAGCATTACAATCCAGAATTGCAAAAATTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAATCAACCATTTCTAAGGTAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACCTTTTCAACTATCACAGACTCACCCACTGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCGCAAGGTAAATTAAGACCAGTAGCAAATGAAGAAGATACATATGAAAATGTGGATCCAGGATCAAAAAATACGGATGCCATGCAATCGCAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  P  T  L  Q  F  *  H  Y  N  P  E  L  Q  K  L  E  K  A  K  S  Y  P  E  L  H  R  N  Q  P  F  L  R  *  P  S  L  H  K  Y  C  S  P  Q  K  S  P  D  Q  T  Y  I  P  F  Q  L  S  Q  T  H  P  L  E  *  K  H  E  *  A  C  Q  A  I  R  K  V  N  *  D  Q  *  Q  M  K  K  I  H  M  K  M  W  I  Q  D  Q  K  I  R  M  P  C  N  R  K  P  </first_frame>
            <second_frame>  I  C  P  R  L  G  Q  R  Y  S  F  S  I  T  I  Q  N  C  K  N  W  R  K  P  S  H  T  Q  N  Y  I  E  I  N  H  F  *  G  N  Q  V  Y  I  S  I  A  P  H  K  S  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  W  S  R  N  T  N  R  H  V  K  Q  F  A  R  *  I  K  T  S  S  K  *  R  R  Y  I  *  K  C  G  S  R  I  K  K  Y  G  C  H  A  I  A  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  R  I  A  K  I  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  V  T  K  S  T  *  V  L  L  P  T  K  V  T  R  P  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  G  K  L  R  P  V  A  N  E  E  D  T  Y  E  N  V  D  P  G  S  K  N  T  D  A  M  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0295L11.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66502" stop="66305"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPTKVTRPDLYTFSTITDSPTGVETRIGMSSNSQGKLRPVANEEDTYENVDPGSKNTDAMQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="66333" PGL_stop="66993"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66333" e_stop="66993"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="66333" e_stop="66993" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66333" stop="66993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATCCTGGATCCACATTTTCATATGTATCTTCTTCATTTGCTACTGGTCTTAATTTACCTTGCGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCAGTGGGTGAGTCTGTGATAGTTGAAAAGGTATATAGGTCTGGTCTGGTGACTTTTGTGGGGAGCAATACTTATGTAGACTTGGTTACCTTAGAAATGGTTGATTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAATTTTTGCAATTCTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGGGACAGATCCTTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCATATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGGAAGGGTTGTTTAGATTTCTTGGCACACCTCAGGGACGATACTACCCAAGTACCTTCAATGGAGTCTGTTTCGATAGTCCGCGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTAGAGCCGGGTACTCGCCCCATTTCCATACCCCCTTATAGGATGGCTCCCGCTGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTTTTAAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  T  G  L  N  L  P  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  I  V  E  K  V  Y  R  S  G  L  V  T  F  V  G  S  N  T  Y  V  D  L  V  T  L  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  I  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  T  P  V  H  I  I  S  F  L  R  A  K  R  M  V  R  K  G  C  L  D  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  M  E  S  V  S  I  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  F  L  S  K  G  F  I  R  P  S  A  S  P  W  </first_frame>
            <second_frame>  L  I  L  D  P  H  F  H  M  Y  L  L  H  L  L  L  V  L  I  Y  L  A  N  C  L  T  C  L  F  V  F  L  L  Q  W  V  S  L  *  *  L  K  R  Y  I  G  L  V  W  *  L  L  W  G  A  I  L  M  *  T  W  L  P  *  K  W  L  I  S  M  *  F  W  V  *  L  G  F  L  Q  F  L  Q  F  W  I  V  M  L  K  L  *  R  W  P  S  L  G  Q  I  L  *  C  G  R  V  T  T  L  P  L  Q  F  I  S  S  P  F  F  V  L  R  E  W  L  G  R  V  V  *  I  S  W  H  T  S  G  T  I  L  P  K  Y  L  Q  W  S  L  F  R  *  S  A  S  F  W  M  C  F  L  Q  T  F  L  V  C  H  R  I  G  I  L  T  F  A  L  I  *  S  R  V  L  A  P  F  P  Y  P  L  I  G  W  L  P  L  S  *  E  S  *  R  P  N  F  K  S  F  *  A  K  A  S  L  D  Q  V  H  L  L  G </second_frame>
            <third_frame>   *  S  W  I  H  I  F  I  C  I  F  F  I  C  Y  W  S  *  F  T  L  R  I  A  *  H  A  Y  S  C  F  Y  S  S  G  *  V  C  D  S  *  K  G  I  *  V  W  S  G  D  F  C  G  E  Q  Y  L  C  R  L  G  Y  L  R  N  G  *  F  R  C  N  S  G  Y  D  L  A  F  S  N  F  C  N  S  G  L  *  C  *  N  C  N  V  G  Q  A  W  D  R  S  F  S  V  G  G  *  L  H  F  H  S  S  S  Y  H  L  L  S  S  C  *  E  N  G  *  E  G  L  F  R  F  L  G  T  P  Q  G  R  Y  Y  P  S  T  F  N  G  V  C  F  D  S  P  R  V  S  G  C  V  S  C  R  P  S  W  Y  A  T  G  *  G  Y  *  L  L  H  *  S  R  A  G  Y  S  P  H  F  H  T  P  L  *  D  G  S  R  *  V  K  R  V  K  G  P  T  S  R  V  F  K  Q  R  L  H  *  T  K  C  I  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0295L11.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66333" stop="66992"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSSFATGLNLPCELLDMPIRVSTPVGESVIVEKVYRSGLVTFVGSNTYVDLVTLEMVDFDVILGMTWLSPIFAILDCNAKTVTLAKPGTDPLVWEGDYTSTPVHIISFLRAKRMVRKGCLDFLAHLRDDTTQVPSMESVSIVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQEFLSKGFIRPSASPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="68884" PGL_stop="67853"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68884" e_stop="67853"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="68884" e_stop="67853" e_length="1032"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68884" stop="68343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68439" stop="67853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68439" stop="67853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68439" stop="67886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAATCGAACAACTTCCGAGATGTAAAGTTTGGCTAACTTTTCTGCATTGTAAGTCACCCTGACCGGAATGAAGTGAGCAGACTTAGTCAACCTATCCACAATTACCCAAATGGAGTCATACTTACCCATTGTCTTGGGAAGACCAACCACGAAGTCCATTGGAATTCTCTCCCATTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGAAACAAAATCAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAGTACTTTGAACTGTGAGCCTCTATAAGAATAGTGCGAATCAAATCATCGACGCGGGGTACACATACTCTTCCCTTAATTCTCAAAACATCTTCCTCATCGATTTTTGCTTCTTTAGCCTCTCCTCGCAATATCTTATCTCGGATCCGGGTCAGTTTCTCATCAGTGAATTGCTTTCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTATCCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATTGGCATTTGGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCTTTTCCCGGATGATATAATATAGTTATATCATAGTCCTTCAGTAGTTCCATCCATCTCCTCTGCCTTAGATTTAAATCTTTCTGAGTAAAGACATACTGTAGGCTACGATGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACCGCCGCTAACTCCAAATCATGGGTCGGATAATTACCTTCATGCACCTTTAATTGC</gDNA_template>
            <first_frame> S  A  C  N  V  F  Q  N  L  E  V  N  C  V  P  L  S  D  M  M  E  S  G  T  P  C  N  R  T  T  S  E  M  *  S  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  D  L  V  N  L  S  T  I  T  Q  M  E  S  Y  L  P  I  V  L  G  R  P  T  T  K  S  I  G  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  *  E  T  K  S  T  M  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  F  E  L  *  A  S  I  R  I  V  R  I  K  S  S  T  R  G  T  H  T  L  P  L  I  L  K  T  S  S  S  S  I  F  A  S  L  A  S  P  R  N  I  L  S  R  I  R  V  S  F  S  S  V  N  C  F  P  L  I  L  S  R  K  E  D  L  A  S  T  Q  A  K  N  P  P  F  S  F  T  S  I  L  I  K  S  L  A  R  V  *  T  S  L  A  N  W  H  L  E  T  C  K  *  A  R  L  P  M  L  P  A  F  L  L  K  A  S  A  T  T  L  A  F  P  G  *  Y  N  I  V  I  S  *  S  F  S  S  S  I  H  L  L  C  L  R  F  K  S  F  *  V  K  T  Y  C  R  L  R  *  S  V  *  T  S  H  L  T  P  Y  R  *  C  L  H  C  F  N  A  N  T  T  A  A  N  S  K  S  W  V  G  *  L  P  S  C  T  F  N  C </first_frame>
            <second_frame>  P  H  A  M  F  S  K  T  *  K  *  T  A  Y  L  Y  L  I  *  W  R  V  E  P  H  A  I  E  Q  L  P  R  C  K  V  W  L  T  F  L  H  C  K  S  P  *  P  E  *  S  E  Q  T  *  S  T  Y  P  Q  L  P  K  W  S  H  T  Y  P  L  S  W  E  D  Q  P  R  S  P  L  E  F  S  P  I  S  I  Q  E  W  A  F  S  E  V  S  L  Q  A  S  G  V  H  T  L  L  A  D  N  S  G  I  E  K  Q  N  Q  Q  C  H  A  S  S  Y  S  T  K  N  V  A  L  G  H  D  T  S  W  L  H  Q  D  V  *  S  T  L  N  C  E  P  L  *  E  *  C  E  S  N  H  R  R  G  V  H  I  L  F  P  *  F  S  K  H  L  P  H  R  F  L  L  L  *  P  L  L  A  I  S  Y  L  G  S  G  S  V  S  H  Q  *  I  A  F  P  *  S  C  Q  E  R  K  I  L  P  P  H  R  P  K  I  L  P  S  H  L  L  L  S  S  *  S  H  *  P  E  S  E  P  L  *  P  I  G  I  W  K  P  A  S  E  L  D  F  P  C  S  L  P  F  Y  L  K  H  L  P  Q  H  *  L  F  P  D  D  I  I  *  L  Y  H  S  P  S  V  V  P  S  I  S  S  A  L  D  L  N  L  S  E  *  R  H  T  V  G  Y  D  D  P  Y  R  L  H  T  *  P  H  I  D  N  V  S  I  A  L  M  Q  T  L  P  P  L  T  P  N  H  G  S  D  N  Y  L  H  A  P  L  I   </second_frame>
            <third_frame>   R  M  Q  C  F  P  K  L  R  S  K  L  R  T  S  I  *  Y  D  G  E  W  N  P  M  Q  S  N  N  F  R  D  V  K  F  G  *  L  F  C  I  V  S  H  P  D  R  N  E  V  S  R  L  S  Q  P  I  H  N  Y  P  N  G  V  I  L  T  H  C  L  G  K  T  N  H  E  V  H  W  N  S  L  P  F  P  F  R  N  G  H  S  L  K  C  P  S  R  P  L  V  F  I  L  Y  L  L  T  I  R  A  L  R  N  K  I  N  N  V  T  L  H  P  T  P  P  K  M  L  L  *  V  T  I  H  L  G  C  T  R  M  Y  R  V  L  *  T  V  S  L  Y  K  N  S  A  N  Q  I  I  D  A  G  Y  T  Y  S  S  L  N  S  Q  N  I  F  L  I  D  F  C  F  F  S  L  S  S  Q  Y  L  I  S  D  P  G  Q  F  L  I  S  E  L  L  S  L  N  L  V  K  K  G  R  S  C  L  H  T  G  Q  K  S  S  L  L  I  Y  F  Y  P  H  K  V  I  S  Q  S  L  N  L  S  S  Q  L  A  F  G  N  L  Q  V  S  *  T  S  H  A  P  C  L  S  T  *  S  I  C  H  N  I  S  F  S  R  M  I  *  Y  S  Y  I  I  V  L  Q  *  F  H  P  S  P  L  P  *  I  *  I  F  L  S  K  D  I  L  *  A  T  M  I  R  I  D  F  T  L  N  P  I  *  I  M  S  P  L  L  *  C  K  H  Y  R  R  *  L  Q  I  M  G  R  I  I  T  F  M  H  L  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0295L11.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68447" stop="68136"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVSLYKNSANQIIDAGYTYSSLNSQNIFLIDFCFFSLSSQYLISDPGQFLISELLSLNLVKKGRSCLHTGQKSSLLIYFYPHKVISQSLNLSSQLAFGNLQVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0295L11.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68771" stop="68493"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFCIVSHPDRNEVSRLSQPIHNYPNGVILTHCLGKTNHEVHWNSLPFPFRNGHSLKCPSRPLVFILYLLTIRALRNKINNVTLHPTPPKMLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0295L11.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68721" stop="68458"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STYPQLPKWSHTYPLSWEDQPRSPLEFSPISIQEWAFSEVSLQASGVHTLLADNSGIEKQNQQCHASSYSTKNVALGHDTSWLHQDV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0295L11.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68440" stop="68180"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASIRIVRIKSSTRGTHTLPLILKTSSSSIFASLASPRNILSRIRVSFSSVNCFPLILSRKEDLASTQAKNPPFSFTSILIKSLARV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="69106" PGL_stop="68930"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69106" e_stop="68930"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="69106" e_stop="68930" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69106" stop="68930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTCCCATACAGTGCCTCAAATGGGGCCATACCAATACTTGAGTGATAGCTATTGTTGTATGAGAATTCTGCTAAGGGTAGGAAGTTATCCCAATGACCACCAAATTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  S  A  S  N  G  A  I  P  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  S  H  T  V  P  Q  M  G  P  Y  Q  Y  L  S  D  S  Y  C  C  M  R  I  L  L  R  V  G  S  Y  P  N  D  H  Q  I  L  S  H  M  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  P  I  Q  C  L  K  W  G  H  T  N  T  *  V  I  A  I  V  V  *  E  F  C  *  G  *  E  V  I  P  M  T  T  K  F  Y  H  T  C  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0295L11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="69821" PGL_stop="70208"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69821" e_stop="70208"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="69821" e_stop="70208" e_length="388"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69821" stop="70208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242274" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGTCGACGGATCCCACGACGGACCGTCATGAGCACGACGGACCGTCGAGGGTGTCTCGTTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGAGATCGACTCTCTGAACTTCGCGAAGAAATGGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGACCCTTGGTGAAATTTAGTCTCTGAACTTTTTGACGGAAGCAGCAGGAAGGACCGTCGCAGGCACGAAGGGCCGTCACAGACTGTGTAACCCTGACTGGGTCGGATTTCTGTTAAATGTTTTAAGGGGCGTTTTGGACTATTCCTGCTTATAATTATAAAGTTAGTGGGTAATATTAATAATTCAATTACTTGAGGGTTAAAGGAGATAACCTTGAATTAATT</gDNA_template>
            <first_frame> *  V  D  G  S  H  D  G  P  S  *  A  R  R  T  V  E  G  V  S  F  Q  N  T  *  N  S  E  I  W  V  L  R  S  T  L  *  T  S  R  R  N  G  R  T  D  R  R  R  H  D  G  P  S  Q  T  L  G  E  I  *  S  L  N  F  L  T  E  A  A  G  R  T  V  A  G  T  K  G  R  H  R  L  C  N  P  D  W  V  G  F  L  L  N  V  L  R  G  V  L  D  Y  S  C  L  *  L  *  S  *  W  V  I  L  I  I  Q  L  L  E  G  *  R  R  *  P  *  I  N  </first_frame>
            <second_frame>  E  S  T  D  P  T  T  D  R  H  E  H  D  G  P  S  R  V  S  R  S  K  T  L  R  I  L  K  F  G  Y  *  D  R  L  S  E  L  R  E  E  M  A  G  R  T  V  A  G  T  T  G  R  H  R  P  L  V  K  F  S  L  *  T  F  *  R  K  Q  Q  E  G  P  S  Q  A  R  R  A  V  T  D  C  V  T  L  T  G  S  D  F  C  *  M  F  *  G  A  F  W  T  I  P  A  Y  N  Y  K  V  S  G  *  Y  *  *  F  N  Y  L  R  V  K  G  D  N  L  E  L  I </second_frame>
            <third_frame>   S  R  R  I  P  R  R  T  V  M  S  T  T  D  R  R  G  C  L  V  P  K  H  L  E  F  *  N  L  G  T  E  I  D  S  L  N  F  A  K  K  W  Q  D  G  P  S  Q  A  R  R  A  V  T  D  P  W  *  N  L  V  S  E  L  F  D  G  S  S  R  K  D  R  R  R  H  E  G  P  S  Q  T  V  *  P  *  L  G  R  I  S  V  K  C  F  K  G  R  F  G  L  F  L  L  I  I  I  K  L  V  G  N  I  N  N  S  I  T  *  G  L  K  E  I  T  L  N  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0295L11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="89302" PGL_stop="88576"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89302" e_stop="88576"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="89302" e_stop="88576" e_length="727"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89302" stop="88817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88876" stop="88576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCATTTTGGGTCCTTCCGGGCTACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCTGTGTTAACCCGTGGCAAAGTCGGTATCTTTAAACCCAAAATCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTAAAAAAATGCTTATTGGCGTCATGCTATGTATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGACACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGACAGTATTTCCAGGTACAATGCTCATTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTACGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTTGTACTGTCACTCTCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTTCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGGTCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACACGTTTGAAAATGTT</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  P  I  P  T  T  S  P  A  R  S  I  L  G  P  S  G  L  P  P  N  H  H  R  P  C  H  P  P  I  L  I  L  C  *  P  V  A  K  S  V  S  L  N  P  K  S  F  R  L  P  Y  Y  Q  I  H  P  F  P  I  V  N  Q  Q  P  T  L  L  P  K  K  M  L  I  G  V  M  L  C  M  T  S  L  R  L  *  L  I  R  K  L  G  F  L  Y  L  S  P  M  G  D  T  Q  W  A  V  N  G  C  T  K  L  N  T  M  Q  M  T  V  F  P  G  T  M  L  I  W  L  L  K  A  T  I  R  S  M  G  L  I  T  T  R  H  S  V  L  L  F  G  R  K  P  F  A  L  Y  C  H  S  P  C  A  T  I  G  S  S  I  S  W  M  F  S  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  V  P  A  S  L  N  M  F  A  N  S  R  S  L  C  M  G  S  S  K  P  P  V  L  G  T  H  V  *  K  C  </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  P  Q  H  L  Q  P  D  P  F  W  V  L  P  G  Y  P  R  I  T  T  A  R  A  T  P  Q  Y  S  S  C  V  N  P  W  Q  S  R  Y  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  Y  V  *  R  V  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  P  W  A  T  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  R  *  Q  Y  F  Q  V  Q  C  S  F  G  C  *  R  L  Q  S  G  V  W  A  *  L  L  R  D  I  Q  S  C  Y  S  A  G  N  H  S  P  C  T  V  T  L  R  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  W  S  P  L  P  S  T  C  L  Q  T  P  E  V  S  V  W  A  Q  A  S  P  P  C  L  V  H  T  F  E  N  V </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  H  N  Q  P  E  P  P  H  T  H  N  I  S  S  P  I  H  F  G  S  F  R  A  T  P  E  S  P  P  P  V  P  P  P  N  T  H  P  V  L  T  R  G  K  V  G  I  F  K  P  K  I  F  Q  A  T  I  L  P  N  T  P  L  P  D  S  E  P  T  T  Y  S  V  A  *  K  N  A  Y  W  R  H  A  M  Y  D  E  F  K  A  L  T  D  Q  K  T  W  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  A  D  D  S  I  S  R  Y  N  A  H  L  V  A  K  G  Y  N  Q  E  Y  G  L  D  Y  Y  E  T  F  S  P  V  I  R  Q  E  T  I  R  L  V  L  S  L  S  V  R  N  N  W  L  I  N  Q  L  D  V  F  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  G  P  R  F  P  Q  H  V  C  K  L  Q  K  S  L  Y  G  L  K  Q  A  P  R  A  W  Y  T  R  L  K  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0295L11.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89042" stop="88578"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNAYWRHAMYDEFKALTDQKTWVLVPKPHGRHPVGCKWVYKIKHNADDSISRYNAHLVAKGYNQEYGLDYYETFSPVIRQETIRLVLSLSVRNNWLINQLDVFNAFLHGMLDETIYMTQPPGYVGPRFPQHVCKLQKSLYGLKQAPRAWYTRLKM</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0295L11.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89300" stop="89043"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNTPATTTHTHNQPEPPHTHNISSPIHFGSFRATPESPPPVPPPNTHPVLTRGKVGIFKPKIFQATILPNTPLPDSEPTTYSVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="100686" PGL_stop="109712"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100686" e_stop="100999"/>
            <exon e_start="101431" e_stop="101501"/>
            <exon e_start="102607" e_stop="102723"/>
            <exon e_start="102812" e_stop="102978"/>
            <exon e_start="103882" e_stop="103967"/>
            <exon e_start="104075" e_stop="104126"/>
            <exon e_start="105243" e_stop="105308"/>
            <exon e_start="106404" e_stop="106531"/>
            <exon e_start="109131" e_stop="109247"/>
            <exon e_start="109323" e_stop="109712"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.836" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.795" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100686" e_stop="100999" e_length="314"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.999">
            <gDNA_intron_boundary i_start="101000" i_stop="101430" i_length="431"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101431" e_stop="101501" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.987">
            <gDNA_intron_boundary i_start="101502" i_stop="102606" i_length="1105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102607" e_stop="102723" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="102724" i_stop="102811" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102812" e_stop="102978" e_length="167"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="102979" i_stop="103881" i_length="903"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="103882" e_stop="103967" e_length="86"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.907">
            <gDNA_intron_boundary i_start="103968" i_stop="104074" i_length="107"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="104075" e_stop="104126" e_length="52"/>
          </exon>
          <intron i_serial="6" don_prob="0.836" acc_prob="0.989">
            <gDNA_intron_boundary i_start="104127" i_stop="105242" i_length="1116"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="105243" e_stop="105308" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="105309" i_stop="106403" i_length="1095"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="106404" e_stop="106531" e_length="128"/>
          </exon>
          <intron i_serial="8" don_prob="0.976" acc_prob="0.972">
            <gDNA_intron_boundary i_start="106532" i_stop="109130" i_length="2599"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="109131" e_stop="109247" e_length="117"/>
          </exon>
          <intron i_serial="9" don_prob="0.795" acc_prob="0.999">
            <gDNA_intron_boundary i_start="109248" i_stop="109322" i_length="75"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="109323" e_stop="109712" e_length="390"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100686" stop="100999"/>
              <exon start="101431" stop="101501"/>
              <exon start="102607" stop="102647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100701" stop="100999"/>
              <exon start="101431" stop="101501"/>
              <exon start="102607" stop="102723"/>
              <exon start="102812" stop="102903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100701" stop="100999"/>
              <exon start="101431" stop="101501"/>
              <exon start="102607" stop="102723"/>
              <exon start="102812" stop="102855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100707" stop="100999"/>
              <exon start="101431" stop="101501"/>
              <exon start="102607" stop="102723"/>
              <exon start="102812" stop="102978"/>
              <exon start="103882" stop="103967"/>
              <exon start="104075" stop="104126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100707" stop="100999"/>
              <exon start="101431" stop="101501"/>
              <exon start="102607" stop="102723"/>
              <exon start="102812" stop="102978"/>
              <exon start="103882" stop="103967"/>
              <exon start="104075" stop="104079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100708" stop="100999"/>
              <exon start="101431" stop="101501"/>
              <exon start="102607" stop="102723"/>
              <exon start="102812" stop="102899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100710" stop="100999"/>
              <exon start="101431" stop="101501"/>
              <exon start="102607" stop="102723"/>
              <exon start="102812" stop="102978"/>
              <exon start="103882" stop="103967"/>
              <exon start="104075" stop="104126"/>
              <exon start="105243" stop="105308"/>
              <exon start="106404" stop="106471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100719" stop="100999"/>
              <exon start="101431" stop="101501"/>
              <exon start="102607" stop="102723"/>
              <exon start="102812" stop="102978"/>
              <exon start="103882" stop="103967"/>
              <exon start="104075" stop="104090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100870" stop="100999"/>
              <exon start="101431" stop="101501"/>
              <exon start="102607" stop="102723"/>
              <exon start="102812" stop="102906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100870" stop="100999"/>
              <exon start="101431" stop="101501"/>
              <exon start="102607" stop="102723"/>
              <exon start="102812" stop="102905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101453" stop="101501"/>
              <exon start="102607" stop="102723"/>
              <exon start="102812" stop="102978"/>
              <exon start="103882" stop="103967"/>
              <exon start="104075" stop="104126"/>
              <exon start="105243" stop="105308"/>
              <exon start="106404" stop="106531"/>
              <exon start="109131" stop="109247"/>
              <exon start="109323" stop="109395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102635" stop="102723"/>
              <exon start="102812" stop="102978"/>
              <exon start="103882" stop="103967"/>
              <exon start="104075" stop="104126"/>
              <exon start="105243" stop="105289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102928" stop="102978"/>
              <exon start="103882" stop="103967"/>
              <exon start="104075" stop="104126"/>
              <exon start="105243" stop="105308"/>
              <exon start="106404" stop="106531"/>
              <exon start="109131" stop="109247"/>
              <exon start="109323" stop="109450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105264" stop="105308"/>
              <exon start="106404" stop="106531"/>
              <exon start="109131" stop="109247"/>
              <exon start="109323" stop="109608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106409" stop="106531"/>
              <exon start="109131" stop="109247"/>
              <exon start="109323" stop="109544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106416" stop="106531"/>
              <exon start="109131" stop="109247"/>
              <exon start="109323" stop="109544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109211" stop="109247"/>
              <exon start="109323" stop="109622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109335" stop="109622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109413" stop="109712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389582" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATCCCAAATCTAGAAGAAAGAAGCTCAACAGGTCGTCTTTTCTGTCAACTCCGGGAAAGAGTAGAAAAGACGGAAGCTGTTGTTTGTGTATAACGCTTGAATCGATCATCAAATTCAAAACTGATTCTTCTACAATCTACTAGTATAGTATATGATGGTGCTGTCACAGCTTCACGGAGCATTCAAGGGTACGGTGGAGAGAATCACTAGCCCTCGTACCGTCTCTGCTTTCAAAGAAAAAGGTGTTCTCAGCGTCAGCGAATTCGTCATAGCTGGAGATAATCTCGTCTCCAAATGCCCTACCTGGTCTTG : GGAATCAGGTGAGCCTAGTAAGAGGAAGTCTTATTTACCAGCCGACAAGCAATTTTTGATAACTAGAAATG : TTCCTTGTCTGAGAAGAGCTGCATCAATAGAGGAAGAATATGAGGCTGCTGGAGGTGAAGTTCTTCTTGATAATGAAGATAATGATGGTTGGCTGGCAACTCATGGCAAACCAAAAG : AAAACAATGGTGCTGAGGATGATAATTTGCCATCTATAGACGCATCAGAAATCAACAAGAAGAACACTATCCAGTCAATCCCATCATACTTTGGAGGCGAGGAAGAGGAGGACATACCTGACATGGGAGATTATGAGGAAGCTGACAATCTTATAGAAACAGACCCT : GCCACCCTTCAGACTACATATCTTGTGGCCAATGAGCCTGATGATGACAACATTCTAAGAACACGAACCTATGATGTCAGCATCAC : GTATGACAAATATTATCAAACACCTCGTGTGTGGCTCACTGGATATGATGAG : TCAAGGATGCTTTTGCAACCAGAACTCGTACTTGAAGATGTCAGTCAAGACCATGCACGCAAGACG : GTGACCATTGAAGACCATCCACATCTTCCAGGGAAACATGCTTCTGTGCATCCTTGCCGACATGGGGCTGTGATGAAGAAAATTATTGATGTTTTGATGTTGAGAGGAGTTGAACCCGAAGTTGACAA : GTATCTTTTCCTGTTCTTGAAGTTTGTGGCTTCGGTTATTCCAACAATTGAATATGATTACACCATGGACTTTGATCTTGGTAGCAGTAGCACCTGATTTGCTGTCAACTTCCTTCG : ATTGATGCTGGCATATAACATGTCAACCAGTCAAATACTCTAATGGCAATACCTATTTATAAATTGTACAGTATTTATAAATGTTCTTCTAGAAATGTGGAGCATGCATGATGAATCGTCAGCATGCCTTGTTTATTTTGTATATTAACAAAGAATAAAGGTTATTCAAGTTTGCACTTTGCACGATCCACTGCAAGGCTGAAATTGTTTATTTAAGTTAAAGTTAGCAGGATGAAAGCTACATGAATAGTAAGTGATGATGTTTGTTTTATGCATCAAATGTCTAGGAATAGCATAAAAATCTCCATTTTACTATTTCCCTTCATATTTCAAATATTAATAAGACTGTAAATATAGATGCATTTACACAATTTTAGAGTTGCATTGTTT</gDNA_template>
            <first_frame> S  S  Q  I  *  K  K  E  A  Q  Q  V  V  F  S  V  N  S  G  K  E  *  K  R  R  K  L  L  F  V  Y  N  A  *  I  D  H  Q  I  Q  N  *  F  F  Y  N  L  L  V  *  Y  M  M  V  L  S  Q  L  H  G  A  F  K  G  T  V  E  R  I  T  S  P  R  T  V  S  A  F  K  E  K  G  V  L  S  V  S  E  F  V  I  A  G  D  N  L  V  S  K  C  P  T  W  S  W :   E  S  G  E  P  S  K  R  K  S  Y  L  P  A  D  K  Q  F  L  I  T  R  N   : V  P  C  L  R  R  A  A  S  I  E  E  E  Y  E  A  A  G  G  E  V  L  L  D  N  E  D  N  D  G  W  L  A  T  H  G  K  P  K   : E  N  N  G  A  E  D  D  N  L  P  S  I  D  A  S  E  I  N  K  K  N  T  I  Q  S  I  P  S  Y  F  G  G  E  E  E  E  D  I  P  D  M  G  D  Y  E  E  A  D  N  L  I  E  T  D  P  :  A  T  L  Q  T  T  Y  L  V  A  N  E  P  D  D  D  N  I  L  R  T  R  T  Y  D  V  S  I  T :   Y  D  K  Y  Y  Q  T  P  R  V  W  L  T  G  Y  D  E  :  S  R  M  L  L  Q  P  E  L  V  L  E  D  V  S  Q  D  H  A  R  K  T  :  V  T  I  E  D  H  P  H  L  P  G  K  H  A  S  V  H  P  C  R  H  G  A  V  M  K  K  I  I  D  V  L  M  L  R  G  V  E  P  E  V  D  K :   Y  L  F  L  F  L  K  F  V  A  S  V  I  P  T  I  E  Y  D  Y  T  M  D  F  D  L  G  S  S  S  T  *  F  A  V  N  F  L  R :   L  M  L  A  Y  N  M  S  T  S  Q  I  L  *  W  Q  Y  L  F  I  N  C  T  V  F  I  N  V  L  L  E  M  W  S  M  H  D  E  S  S  A  C  L  V  Y  F  V  Y  *  Q  R  I  K  V  I  Q  V  C  T  L  H  D  P  L  Q  G  *  N  C  L  F  K  L  K  L  A  G  *  K  L  H  E  *  *  V  M  M  F  V  L  C  I  K  C  L  G  I  A  *  K  S  P  F  Y  Y  F  P  S  Y  F  K  Y  *  *  D  C  K  Y  R  C  I  Y  T  I  L  E  L  H  C   </first_frame>
            <second_frame>  H  P  K  S  R  R  K  K  L  N  R  S  S  F  L  S  T  P  G  K  S  R  K  D  G  S  C  C  L  C  I  T  L  E  S  I  I  K  F  K  T  D  S  S  T  I  Y  *  Y  S  I  *  W  C  C  H  S  F  T  E  H  S  R  V  R  W  R  E  S  L  A  L  V  P  S  L  L  S  K  K  K  V  F  S  A  S  A  N  S  S  *  L  E  I  I  S  S  P  N  A  L  P  G  L   : G  N  Q  V  S  L  V  R  G  S  L  I  Y  Q  P  T  S  N  F  *  *  L  E  M  :  F  L  V  *  E  E  L  H  Q  *  R  K  N  M  R  L  L  E  V  K  F  F  L  I  M  K  I  M  M  V  G  W  Q  L  M  A  N  Q  K  :  K  T  M  V  L  R  M  I  I  C  H  L  *  T  H  Q  K  S  T  R  R  T  L  S  S  Q  S  H  H  T  L  E  A  R  K  R  R  T  Y  L  T  W  E  I  M  R  K  L  T  I  L  *  K  Q  T  L :   P  P  F  R  L  H  I  L  W  P  M  S  L  M  M  T  T  F  *  E  H  E  P  M  M  S  A  S   : R  M  T  N  I  I  K  H  L  V  C  G  S  L  D  M  M  S :   Q  G  C  F  C  N  Q  N  S  Y  L  K  M  S  V  K  T  M  H  A  R  R :   *  P  L  K  T  I  H  I  F  Q  G  N  M  L  L  C  I  L  A  D  M  G  L  *  *  R  K  L  L  M  F  *  C  *  E  E  L  N  P  K  L  T   : S  I  F  S  C  S  *  S  L  W  L  R  L  F  Q  Q  L  N  M  I  T  P  W  T  L  I  L  V  A  V  A  P  D  L  L  S  T  S  F   : D  *  C  W  H  I  T  C  Q  P  V  K  Y  S  N  G  N  T  Y  L  *  I  V  Q  Y  L  *  M  F  F  *  K  C  G  A  C  M  M  N  R  Q  H  A  L  F  I  L  Y  I  N  K  E  *  R  L  F  K  F  A  L  C  T  I  H  C  K  A  E  I  V  Y  L  S  *  S  *  Q  D  E  S  Y  M  N  S  K  *  *  C  L  F  Y  A  S  N  V  *  E  *  H  K  N  L  H  F  T  I  S  L  H  I  S  N  I  N  K  T  V  N  I  D  A  F  T  Q  F  *  S  C  I  V  </second_frame>
            <third_frame>   I  P  N  L  E  E  R  S  S  T  G  R  L  F  C  Q  L  R  E  R  V  E  K  T  E  A  V  V  C  V  *  R  L  N  R  S  S  N  S  K  L  I  L  L  Q  S  T  S  I  V  Y  D  G  A  V  T  A  S  R  S  I  Q  G  Y  G  G  E  N  H  *  P  S  Y  R  L  C  F  Q  R  K  R  C  S  Q  R  Q  R  I  R  H  S  W  R  *  S  R  L  Q  M  P  Y  L  V  L  :  G  I  R  *  A  *  *  E  E  V  L  F  T  S  R  Q  A  I  F  D  N  *  K  C :   S  L  S  E  K  S  C  I  N  R  G  R  I  *  G  C  W  R  *  S  S  S  *  *  *  R  *  *  W  L  A  G  N  S  W  Q  T  K  R :   K  Q  W  C  *  G  *  *  F  A  I  Y  R  R  I  R  N  Q  Q  E  E  H  Y  P  V  N  P  I  I  L  W  R  R  G  R  G  G  H  T  *  H  G  R  L  *  G  S  *  Q  S  Y  R  N  R  P   : C  H  P  S  D  Y  I  S  C  G  Q  *  A  *  *  *  Q  H  S  K  N  T  N  L  *  C  Q  H  H  :  V  *  Q  I  L  S  N  T  S  C  V  A  H  W  I  *  *   : V  K  D  A  F  A  T  R  T  R  T  *  R  C  Q  S  R  P  C  T  Q  D   : G  D  H  *  R  P  S  T  S  S  R  E  T  C  F  C  A  S  L  P  T  W  G  C  D  E  E  N  Y  *  C  F  D  V  E  R  S  *  T  R  S  *  Q  :  V  S  F  P  V  L  E  V  C  G  F  G  Y  S  N  N  *  I  *  L  H  H  G  L  *  S  W  *  Q  *  H  L  I  C  C  Q  L  P  S  :  I  D  A  G  I  *  H  V  N  Q  S  N  T  L  M  A  I  P  I  Y  K  L  Y  S  I  Y  K  C  S  S  R  N  V  E  H  A  *  *  I  V  S  M  P  C  L  F  C  I  L  T  K  N  K  G  Y  S  S  L  H  F  A  R  S  T  A  R  L  K  L  F  I  *  V  K  V  S  R  M  K  A  T  *  I  V  S  D  D  V  C  F  M  H  Q  M  S  R  N  S  I  K  I  S  I  L  L  F  P  F  I  F  Q  I  L  I  R  L  *  I  *  M  H  L  H  N  F  R  V  A  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0295L11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100836" stop="100999"/>
                    <exon start="101431" stop="101501"/>
                    <exon start="102607" stop="102723"/>
                    <exon start="102812" stop="102978"/>
                    <exon start="103882" stop="103967"/>
                    <exon start="104075" stop="104126"/>
                    <exon start="105243" stop="105308"/>
                    <exon start="106404" stop="106531"/>
                    <exon start="109131" stop="109227"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>945</number_coding_nucleotides>
                  <number_encoded_amino_acids>315</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YMMVLSQLHGAFKGTVERITSPRTVSAFKEKGVLSVSEFVIAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASIEEEYEAAGGEVLLDNEDNDGWLATHGKPKENNGAEDDNLPSIDASEINKKNTIQSIPSYFGGEEEEDIPDMGDYEEADNLIETDPATLQTTYLVANEPDDDNILRTRTYDVSITYDKYYQTPRVWLTGYDESRMLLQPELVLEDVSQDHARKTVTIEDHPHLPGKHASVHPCRHGAVMKKIIDVLMLRGVEPEVDKYLFLFLKFVASVIPTIEYDYTMDFDLGSSST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 247 chains have been computed
$ 
$ memory statistics:
$ 84816 bytes spliced alignments in total
$ 40 spliced alignments have been stored
$ 2120 bytes was the average size of a spliced alignment
$ 20336 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1564 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 319 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:52:40
-->
