<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 17:23:10"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241461" ref_strand="+" ref_description="SGN-E241461 [cLED-28-I9]">
      <seq>tcaagtaaaataagattcgatgactctgatgaacatgaatcttcatctgaagatgaggaggagaaggggattgaggaggaccttgctgatgtgacctttgaagaattgccaagagcacggactgatggatcagctacagtgtataggaagcttaattctgaaggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7892" stop="8659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8192" g_stop="8359" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E241461" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>168</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8192" e_stop="8359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTAAAATAAGATTCGATGACTCTGATGAACATGAATCTTCATCTGAAGATGAGGAGGAGAAGGGGATTGAGGAGGAGCTTGCTGATGTGACCTTTGAAGAATTGCAGAGAGCACGGTCTGATGGATCAGCTACAGTGTATAGGAAGCTTAATTCGGAAGGAAAA</genome_strand>
        <mrna_strand>TCAAGTAAAATAAGATTCGATGACTCTGATGAACATGAATCTTCATCTGAAGATGAGGAGGAGAAGGGGATTGAGGAGGACCTTGCTGATGTGACCTTTGAAGAATTGCCAAGAGCACGGACTGATGGATCAGCTACAGTGTATAGGAAGCTTAATTCTGAAGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395080" ref_strand="+" ref_description="SGN-E395080 [TUS-35-J21](-)">
      <seq>ttggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttttctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatcaagaattgctgatgtggcaatgcctctaagggctgaattttttatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11877" stop="10630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11577" g_stop="10931" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="648" polyA_stop="659"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E395080" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11577" e_stop="10931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGATGTGGCAATGCCTCTAAGGGCTGAATTTTTTATTT</genome_strand>
        <mrna_strand>TTGGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTTTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGATGTGGCAATGCCTCTAAGGGCTGAATTTTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392315" ref_strand="+" ref_description="SGN-E392315 [TUS-35-K4](-)">
      <seq>cacaacagaaaatactactagcagggaagaaaaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatcaagaattgctgatgtggcaatgcctctaaggggctgaattttttatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11603" stop="10630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11303" g_stop="10931" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="375" polyA_stop="386"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E392315" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11303" e_stop="10931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGATGTGGCAATGCCTCTAA-GGGCTGAATTTTTTATTT</genome_strand>
        <mrna_strand>CACAACAGAAAATACTACTAGCAGGGAAGAAAAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGATGTGGCAATGCCTCTAAGGGGCTGAATTTTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392631" ref_strand="+" ref_description="SGN-E392631 [TUS-35-N2](-)">
      <seq>gttaattaatgcaactataatagggagtatgcatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatacaagaattgctgatgtggcaatgcctctaagggctgaataaggtataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11524" stop="10640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11224" g_stop="10942" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="292" polyA_stop="306"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E392631" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11224" e_stop="10942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAAT-CAAGAATTGCTGATGTGGCAATGCCTCTAAGGGCTGA</genome_strand>
        <mrna_strand>GTTAATTAATGCAACTATAATAGGGAGTATGCATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATACAAGAATTGCTGATGTGGCAATGCCTCTAAGGGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722256" ref_strand="+" ref_description="SGN-E722256 [FC16CH05]">
      <seq>gatacttttctcttcctaaattattagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatcaagaattgctgatgtggcaatgcctctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12143" g_stop="11956" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="216" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="10949" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="838" r_length="622" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="839" polyA_stop="850"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E722256" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12143" e_stop="11956"/>
          <exon e_start="11570" e_stop="10949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGATGTGGCAATGCCTCTAA</genome_strand>
        <mrna_strand>TCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGATGTGGCAATGCCTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719337" ref_strand="+" ref_description="SGN-E719337 [FC07CB11]">
      <seq>tggcggccaatcggccgaattgatacttttctcttcctatattattagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactaccagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacaatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatacaacataagattaaaagttggttccgagaagctatattgttacaatgaaatctatatatataataaatctaaatcaagaattgctgatgtggcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12143" g_stop="11956" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="237" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="10956" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="852" r_length="615" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E719337" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12143" e_stop="11956"/>
          <exon e_start="11570" e_stop="10956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGATGTGGCAATG</genome_strand>
        <mrna_strand>TCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTACCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACAATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATACAACATAAGATTAAAAGTTGGTTCCGAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGATGTGGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722693" ref_strand="+" ref_description="SGN-E722693 [FC18AB03]">
      <seq>aatcggccgaattgatacttttctcttcttataattattagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccaaataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatcaagaattgctgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12143" g_stop="11956" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="230" r_length="188" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="10962" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="839" r_length="609" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E722693" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12143" e_stop="11956"/>
          <exon e_start="11570" e_stop="10962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGATGTG</genome_strand>
        <mrna_strand>TCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAAATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711908" ref_strand="+" ref_description="SGN-E711908 [FB03BD06]">
      <seq>aatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatcaacaattgctgatgaaaaaaacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="11956" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="10965" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="789" r_length="605" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="791" polyA_stop="805"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E711908" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="11956"/>
          <exon e_start="11570" e_stop="10965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGAT</genome_strand>
        <mrna_strand>AATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATT-AAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAACAATTGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714170" ref_strand="+" ref_description="SGN-E714170 [FB10CH03]">
      <seq>catttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattanaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatcaagaattgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12111" g_stop="11956" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="10966" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="761" r_length="605" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E714170" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12111" e_stop="11956"/>
          <exon e_start="11570" e_stop="10966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGA</genome_strand>
        <mrna_strand>CATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTANAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714971" ref_strand="+" ref_description="SGN-E714971 [FB12DH04]">
      <seq>tattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatcaagaattgctgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12131" g_stop="11956" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="10967" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="780" r_length="604" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="781" polyA_stop="791"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E714971" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12131" e_stop="11956"/>
          <exon e_start="11570" e_stop="10967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTG</genome_strand>
        <mrna_strand>TATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717788" ref_strand="+" ref_description="SGN-E717788 [FC02DA04]">
      <seq>gggcgattggcggccaatcggccgaattgatacttttctcttctcaaattattagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatcaagaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12143" g_stop="11956" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="244" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="10969" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="846" r_length="602" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E717788" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12143" e_stop="11956"/>
          <exon e_start="11570" e_stop="10969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGC</genome_strand>
        <mrna_strand>TCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721841" ref_strand="+" ref_description="SGN-E721841 [FC15BH01]">
      <seq>tcataatttacttattattactgtttaatacccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatcaagaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12143" g_stop="11956" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="10969" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="790" r_length="602" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E721841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12143" e_stop="11956"/>
          <exon e_start="11570" e_stop="10969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGC</genome_strand>
        <mrna_strand>TCATAATTTACTTATTATTACTGTTTAATACCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724482" ref_strand="+" ref_description="SGN-E724482 [FC24BA01]">
      <seq>cgattggcggccaatcggccgaattcccatggggatccgacgatacttttctcttcttataattattagctcataatttactcattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatcaagaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12143" g_stop="11956" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="258" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="10969" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="860" r_length="602" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E724482" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12143" e_stop="11956"/>
          <exon e_start="11570" e_stop="10969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGC</genome_strand>
        <mrna_strand>TCATAATTTACTCATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712863" ref_strand="+" ref_description="SGN-E712863 [FB06AB06]">
      <seq>attagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatcaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12148" g_stop="11956" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="10974" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="791" r_length="597" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E712863" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12148" e_stop="11956"/>
          <exon e_start="11570" e_stop="10974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTA-CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGA</genome_strand>
        <mrna_strand>ATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716847" ref_strand="+" ref_description="SGN-E716847 [FB18AH01]">
      <seq>gatcgctataacaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatcaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12098" g_stop="11956" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="10974" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="740" r_length="597" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E716847" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12098" e_stop="11956"/>
          <exon e_start="11570" e_stop="10974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGA</genome_strand>
        <mrna_strand>GATCGCTATAACAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715210" ref_strand="+" ref_description="SGN-E715210 [FB13CF04]">
      <seq>attagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12148" g_stop="11956" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="10978" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="787" r_length="593" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E715210" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12148" e_stop="11956"/>
          <exon e_start="11570" e_stop="10978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTA-CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATC</genome_strand>
        <mrna_strand>ATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715853" ref_strand="+" ref_description="SGN-E715853 [FB15BG10]">
      <seq>tattagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12149" g_stop="11956" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="10979" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="787" r_length="592" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E715853" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12149" e_stop="11956"/>
          <exon e_start="11570" e_stop="10979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTA-CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAAT</genome_strand>
        <mrna_strand>TATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703939" ref_strand="+" ref_description="SGN-E703939 [FA22DF04]">
      <seq>tcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatataataaatctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12143" g_stop="11956" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="10981" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="776" r_length="588" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E703939" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12143" e_stop="11956"/>
          <exon e_start="11570" e_stop="10981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAA</genome_strand>
        <mrna_strand>TCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATC--TATATATAATAAATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718025" ref_strand="+" ref_description="SGN-E718025 [FC03BG06]">
      <seq>gggcgattggcggccaatcggccgaattgatacttttctcttctcatattattagctcataatttacttattattactgtttaatacccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12143" g_stop="11956" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="244" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="10981" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="834" r_length="590" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E718025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12143" e_stop="11956"/>
          <exon e_start="11570" e_stop="10981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAA</genome_strand>
        <mrna_strand>TCATAATTTACTTATTATTACTGTTTAATACCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712427" ref_strand="+" ref_description="SGN-E712427 [FB04DC10]">
      <seq>cttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12133" g_stop="11956" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="10981" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="768" r_length="590" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E712427" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12133" e_stop="11956"/>
          <exon e_start="11570" e_stop="10981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAA</genome_strand>
        <mrna_strand>CTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720496" ref_strand="+" ref_description="SGN-E720496 [FC10DH11]">
      <seq>gggcgattggcggcccatcggccgaattgatacttttctcttccccttaaagtagctcataatttacttattattactgtttaatcgccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12143" g_stop="11956" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="244" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="10985" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="830" r_length="586" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E720496" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12143" e_stop="11956"/>
          <exon e_start="11570" e_stop="10985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAAT</genome_strand>
        <mrna_strand>TCATAATTTACTTATTATTACTGTTTAATCGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369447" ref_strand="+" ref_description="SGN-E369447 [TUS-23-O15](-)">
      <seq>tttaatagccatttttaaacatcttcttttcaagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatcggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12120" g_stop="11956" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="10992" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="744" r_length="579" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E369447" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12120" e_stop="11956"/>
          <exon e_start="11570" e_stop="10992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATAT</genome_strand>
        <mrna_strand>TTTAATAGCCATTTTTAAACATCTTCTTTTCAAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261051" ref_strand="+" ref_description="SGN-E261051 [cLEG-55-F22]">
      <seq>tattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12131" g_stop="11956" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="10994" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="752" r_length="576" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E261051" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12131" e_stop="11956"/>
          <exon e_start="11570" e_stop="10994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATAT</genome_strand>
        <mrna_strand>TATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATT-AAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719791" ref_strand="+" ref_description="SGN-E719791 [FC08DE11]">
      <seq>gatacttttctcttcttataattattagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaattctatataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12143" g_stop="11956" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="217" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="10996" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="792" r_length="575" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="793" polyA_stop="823"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E719791" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12143" e_stop="11956"/>
          <exon e_start="11570" e_stop="10996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATAT</genome_strand>
        <mrna_strand>TCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAATTCTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723381" ref_strand="+" ref_description="SGN-E723381 [FC20BC08]">
      <seq>gatacttttctcttcttataattattagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaaaaagctatattgttacaatgaaatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12143" g_stop="11956" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="217" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="10999" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="789" r_length="572" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E723381" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12143" e_stop="11956"/>
          <exon e_start="11570" e_stop="10999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTA</genome_strand>
        <mrna_strand>TCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAAAAGCTATATTGTTACAATGAAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260006" ref_strand="+" ref_description="SGN-E260006 [cLEG-51-P10]">
      <seq>taacaatatagcttcttggaaccaacttttaatcttatgttctattacatattctctatacaatactaacttttttttttaatttggacaaacaaacgatattacagagaagtttgatcgtatgtattgcaccatatgaccatttaaaagcagcccacacagagtagctagttttattctatacatactccatattatacttccattaattaactaaacatatcacatattcatagaacacaacaaacgaaacacctctttcaccttccctgctagtagtattttctgttgtgatgttttctgaaacttaaggataactaggcttctccagatcctcgaaatcacgaaaaaatgtcttttgttccaacacagaatctaccgtggagaattgagaaccatattttataatgtgatcagtagctggcccaaacacccctgtttggggatgaggagtccagtacttgtatttgtccgattctacctcgattatttctcgaaacccccgccccttcgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10711" stop="11817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11011" g_stop="11503" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E260006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11011" e_stop="11503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATATAGCTTCTTGGAACCAACTTTTAATCTTATGTTCTATTACATATTCTCTATACAATACTAACTTTTTTTTTTAATTTGGACAAACAAACGATATTACAGAGAAGTTTGATCGTATGTATTGCACCATATGACCATTTAAAAGCAGCCCACACAGAGTAGCTAGTTTTATTCTATACATACTCCATATTATACTTCCATTAATTAACTAAACATATCACATATTCATAGAACACAACAAACGAAACACCTCTTTCACCTTCCCTGCTAGTAGTATTTTCTGTTGTGATGTTTTCTGAAACTTAAGGATAACTAGGCTTCTCCAGATCCTCGAAATCACGAAAAAATGTCTTTTGTTCCAACACAGAATCTACCGTGGAGAATTGAGAACCATATTTTATAATGTGATCAGTAGCTGGCCCAAACACCCCTGTTTGGGGATGAGGAGTCCAGTACTTGTATTTGTCCGATTCTACCTCGATTATTTC</genome_strand>
        <mrna_strand>TAACAATATAGCTTCTTGGAACCAACTTTTAATCTTATGTTCTATTACATATTCTCTATACAATACTAACTTTTTTTTTTAATTTGGACAAACAAACGATATTACAGAGAAGTTTGATCGTATGTATTGCACCATATGACCATTTAAAAGCAGCCCACACAGAGTAGCTAGTTTTATTCTATACATACTCCATATTATACTTCCATTAATTAACTAAACATATCACATATTCATAGAACACAACAAACGAAACACCTCTTTCACCTTCCCTGCTAGTAGTATTTTCTGTTGTGATGTTTTCTGAAACTTAAGGATAACTAGGCTTCTCCAGATCCTCGAAATCACGAAAAAATGTCTTTTGTTCCAACACAGAATCTACCGTGGAGAATTGAGAACCATATTTTATAATGTGATCAGTAGCTGGCCCAAACACCCCTGTTTGGGGATGAGGAGTCCAGTACTTGTATTTGTCCGATTCTACCTCGATTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716094" ref_strand="+" ref_description="SGN-E716094 [FB16AD10]">
      <seq>gataaacagatcgctataacaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacatgggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12106" g_stop="11956" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11015" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="707" r_length="556" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E716094" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12106" e_stop="11956"/>
          <exon e_start="11570" e_stop="11015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATT</genome_strand>
        <mrna_strand>GATAAACAGATCGCTATAACAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACATGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713572" ref_strand="+" ref_description="SGN-E713572 [FB09AA08]">
      <seq>gataaacagatcgctataacaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12106" g_stop="11956" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11018" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="704" r_length="553" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E713572" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12106" e_stop="11956"/>
          <exon e_start="11570" e_stop="11018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTAT</genome_strand>
        <mrna_strand>GATAAACAGATCGCTATAACAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718075" ref_strand="+" ref_description="SGN-E718075 [FC03CD09]">
      <seq>cggccgattgacttttctcttcttataattattagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12143" g_stop="11956" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="224" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11047" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="748" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E718075" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12143" e_stop="11956"/>
          <exon e_start="11570" e_stop="11047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACAT</genome_strand>
        <mrna_strand>TCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369448" ref_strand="+" ref_description="SGN-E369448 [TUS-23-O15]">
      <seq>ttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12119" g_stop="11956" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11054" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="681" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E369448" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12119" e_stop="11956"/>
          <exon e_start="11570" e_stop="11054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAAT</genome_strand>
        <mrna_strand>TTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723595" ref_strand="+" ref_description="SGN-E723595 [FC21AA01]">
      <seq>ggccgaattgacttttctcttcccccctaaaggagctcataatttacttattattactgtttaatccctataaaaaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtttagagaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12143" g_stop="11956" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="224" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11058" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="737" r_length="513" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E723595" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12143" e_stop="11956"/>
          <exon e_start="11570" e_stop="11058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATG</genome_strand>
        <mrna_strand>TCATAATTTACTTATTATTACTGTTTAATCCCTATAAAAAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTTTAGAGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257063" ref_strand="+" ref_description="SGN-E257063 [cLEG-44-D21]">
      <seq>aacttttttttttaatttggacaaacaaacgatattacagagaagtttgatcgtatgtattgcaccatatgaccatttaaaagcagcccacacagagtagctagttttattctatacatactccatattatacttgcattaattaactaaacatatcacatattcatagaacacaacagacgaaacacctctttcaccttccctgctagtagtattttctgttgtgatgttttctgaaacttaaggataactaggcttgtccagatcctcgaaatcacgaaaaaatgtctttggttccaacacagaatctaccgtggagaattgagaaccatattttataatgtgatcagtagctggcccaaacacccctgtttggggatgaggagtccagtacttgtatttgtccgattctacctcgagtatttctcgaaccccccgccccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10778" stop="11806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11078" g_stop="11503" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E257063" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11078" e_stop="11503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTTTTTTTAATTTGGACAAACAAACGATATTACAGAGAAGTTTGATCGTATGTATTGCACCATATGACCATTTAAAAGCAGCCCACACAGAGTAGCTAGTTTTATTCTATACATACTCCATATTATACTTCCATTAATTAACTAAACATATCACATATTCATAGAACACAACAAACGAAACACCTCTTTCACCTTCCCTGCTAGTAGTATTTTCTGTTGTGATGTTTTCTGAAACTTAAGGATAACTAGGCTTCTCCAGATCCTCGAAATCACGAAAAAATGTCTTTTGTTCCAACACAGAATCTACCGTGGAGAATTGAGAACCATATTTTATAATGTGATCAGTAGCTGGCCCAAACACCCCTGTTTGGGGATGAGGAGTCCAGTACTTGTATTTGTCCGATTCTACCTCGATTATTTC</genome_strand>
        <mrna_strand>AACTTTTTTTTTTAATTTGGACAAACAAACGATATTACAGAGAAGTTTGATCGTATGTATTGCACCATATGACCATTTAAAAGCAGCCCACACAGAGTAGCTAGTTTTATTCTATACATACTCCATATTATACTTGCATTAATTAACTAAACATATCACATATTCATAGAACACAACAGACGAAACACCTCTTTCACCTTCCCTGCTAGTAGTATTTTCTGTTGTGATGTTTTCTGAAACTTAAGGATAACTAGGCTTGTCCAGATCCTCGAAATCACGAAAAAATGTCTTTGGTTCCAACACAGAATCTACCGTGGAGAATTGAGAACCATATTTTATAATGTGATCAGTAGCTGGCCCAAACACCCCTGTTTGGGGATGAGGAGTCCAGTACTTGTATTTGTCCGATTCTACCTCGAGTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274801" ref_strand="+" ref_description="SGN-E274801 [cLEN-13-O12]">
      <seq>ttagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12147" g_stop="11956" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11084" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="680" r_length="487" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E274801" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12147" e_stop="11956"/>
          <exon e_start="11570" e_stop="11084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTA-CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAA</genome_strand>
        <mrna_strand>TTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721155" ref_strand="+" ref_description="SGN-E721155 [FC12DG08]">
      <seq>tacttttctcttcttataattattagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12143" g_stop="11956" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="215" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11084" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="702" r_length="487" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E721155" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12143" e_stop="11956"/>
          <exon e_start="11570" e_stop="11084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAA</genome_strand>
        <mrna_strand>TCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710326" ref_strand="+" ref_description="SGN-E710326 [FA55AD02]">
      <seq>cattagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatacaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatccaacttctctgtaatatcgtttgtttgtccaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12151" g_stop="11956" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11092" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="674" r_length="479" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E710326" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12151" e_stop="11956"/>
          <exon e_start="11570" e_stop="11092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATTACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAAT</genome_strand>
        <mrna_strand>CAT-TAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATACAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCCAACTTCTCTGTAATATCGTTTGTTTGTCCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263643" ref_strand="+" ref_description="SGN-E263643 [cLEG-60-A13]">
      <seq>tattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12131" g_stop="11956" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11106" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="641" r_length="465" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E263643" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12131" e_stop="11956"/>
          <exon e_start="11570" e_stop="11106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGT</genome_strand>
        <mrna_strand>TATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273382" ref_strand="+" ref_description="SGN-E273382 [cLEN-3-H8]">
      <seq>ttagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12147" g_stop="11956" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11127" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="637" r_length="444" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E273382" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12147" e_stop="11956"/>
          <exon e_start="11570" e_stop="11127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTA-CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGAT</genome_strand>
        <mrna_strand>TTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276153" ref_strand="+" ref_description="SGN-E276153 [cLEN-21-C23]">
      <seq>gctataacaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12094" g_stop="11956" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11128" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="582" r_length="443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E276153" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12094" e_stop="11956"/>
          <exon e_start="11570" e_stop="11128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGA</genome_strand>
        <mrna_strand>GCTATAACAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254444" ref_strand="+" ref_description="SGN-E254444 [cLEG-27-B20]">
      <seq>tattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12131" g_stop="11956" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11131" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="616" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E254444" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12131" e_stop="11956"/>
          <exon e_start="11570" e_stop="11131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATA</genome_strand>
        <mrna_strand>TATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247047" ref_strand="+" ref_description="SGN-E247047 [cLEF-41-F9]">
      <seq>ttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagaacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaagtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12119" g_stop="11956" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11131" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="605" r_length="441" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E247047" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12119" e_stop="11956"/>
          <exon e_start="11570" e_stop="11131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAG-ACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATA</genome_strand>
        <mrna_strand>TTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGAACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAAGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249440" ref_strand="+" ref_description="SGN-E249440 [cLEF-50-H12]">
      <seq>tttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaagtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtccnnnnaaaaaaaaaaannnnaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12094" g_stop="11956" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11143" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="567" r_length="428" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="568" polyA_stop="579"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E249440" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12094" e_stop="11956"/>
          <exon e_start="11570" e_stop="11143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATG</genome_strand>
        <mrna_strand>TTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAAGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCCNNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276696" ref_strand="+" ref_description="SGN-E276696 [cLEN-14-O12]">
      <seq>ttagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12147" g_stop="11956" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11144" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="620" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E276696" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12147" e_stop="11956"/>
          <exon e_start="11570" e_stop="11144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTA-CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATAT</genome_strand>
        <mrna_strand>TTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723674" ref_strand="+" ref_description="SGN-E723674 [FC21BC06]">
      <seq>atgggccactaatttacagaaacggggactggtaagcttggggaaacgatttgtgaaccaaataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaaaacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12075" g_stop="11956" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11172" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="519" r_length="399" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E723674" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12075" e_stop="11956"/>
          <exon e_start="11570" e_stop="11172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTC</genome_strand>
        <mrna_strand>ATGGGCCACTAATTTACAGAAACGGGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAAATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAAACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260009" ref_strand="+" ref_description="SGN-E260009 [cLEG-51-P18]">
      <seq>tattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaagtgaaagaggtgtttcgtttggtgtgttctatgaatatgtgatatggttagttaattaatggaaggataatatggagtatgtataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12131" g_stop="11956" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11188" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="559" r_length="383" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E260009" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12131" e_stop="11956"/>
          <exon e_start="11570" e_stop="11188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGA</genome_strand>
        <mrna_strand>TATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAAGTGAAAGAGGTGTTTCGTTTGGTGTGTTCTATGAATATGTGATATGGTTAGTTAATTAATGGAAGGATAATATGGAGTATGTATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254315" ref_strand="+" ref_description="SGN-E254315 [cLEG-27-F14]">
      <seq>tattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12131" g_stop="11956" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11194" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="553" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E254315" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12131" e_stop="11956"/>
          <exon e_start="11570" e_stop="11194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATG</genome_strand>
        <mrna_strand>TATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395081" ref_strand="+" ref_description="SGN-E395081 [TUS-35-J21]">
      <seq>attagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12148" g_stop="11956" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11210" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="555" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E395081" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12148" e_stop="11956"/>
          <exon e_start="11570" e_stop="11210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTA-CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAG</genome_strand>
        <mrna_strand>ATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253957" ref_strand="+" ref_description="SGN-E253957 [cLEG-28-D16]">
      <seq>atttacttattattacctgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttaccagaaaccgtggactggtaagcttggggaaaccgatttgtgaacccagataaccttattcaaccttctcgaaattctgccaacctcatcatctactgcgcctctctggcaggaatgtggtgccaccaccgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtccctgatgaaataatcgaggtagaatcggaccaataccagtacctggacctcctcatcccccaaaccaggggtgtttgggcccagctacctgatcaccattataaaatatggttctcaattctccacggtagattctgtgttggaaccaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12141" g_stop="11956" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.862"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="0.87"/>
            <acceptor a_prob="1.000" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11229" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="545" r_length="353" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E253957" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12141" e_stop="11956"/>
          <exon e_start="11570" e_stop="11229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAA-CGATTTGTGAA-CCAGATAA-CTTATTCAA-CTTCTCGAAATTCTGCCAA-CTCATCATCTACTGCG-CTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTG-CA-CA-CGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTA-CTGGA-CTCCTCAT-CCCCAAA-CAGGGGTGTTTGGG-CCAGCTA-CTGATCA-CATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAA-CAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATG</genome_strand>
        <mrna_strand>ATTTACTTATTATTACCTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACCAGAAACCGTGGACTGGTAAGCTTGGGGAAACCGATTTGTGAACCCAGATAACCTTATTCAACCTTCTCGAAATTCTGCCAACCTCATCATCTACTGCGCCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCCACCACCGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTCCCTGATGAAATAATCGAGGTAGAATCGGACCAATACCAGTACCTGGACCTCCTCATCCCCCAAACCAGGGGTGTTTGGGCCCAGCTACCTGATCACCATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACCAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698453" ref_strand="+" ref_description="SGN-E698453 [FA06BE02]">
      <seq>cgcttattattactgctttaatagccatttttaaacatctctctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcactgtatgacaagaatatacaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccacctactgatcacattataaaatatggttctcaattctccacggcagattctgcgctggaacaacagacattttttcctgatttcgaggcatctggagaacccctactcatccttaagtttcagaaaacatccacaacagaaaatatctacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="10984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12137" g_stop="11956" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11284" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="473" r_length="291" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E698453" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12137" e_stop="11956"/>
          <exon e_start="11570" e_stop="11284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGG-ATCTGGAGAA-GCCTAGTTATCCTTAAGTTTCAGAAAACAT-CACAACAGAAAATA-CTACTA</genome_strand>
        <mrna_strand>CGCTTATTATTACTGCTTTAATAGCCATTTTTAAACATCTCTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCACTGTATGACAAGAATATACAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCACCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGCAGATTCTGCGCTGGAACAACAGACATTTTTTCCTGATTTCGAGGCATCTGGAGAACCCCTACTCATCCTTAAGTTTCAGAAAACATCCACAACAGAAAATATCTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392316" ref_strand="+" ref_description="SGN-E392316 [TUS-35-K4]">
      <seq>attagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttggcgggggggcgaggatctggataagcctagttatccttaagtttcagaaaacatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="11001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12148" g_stop="11956" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11301" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="464" r_length="270" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E392316" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12148" e_stop="11956"/>
          <exon e_start="11570" e_stop="11301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTA-CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCAC</genome_strand>
        <mrna_strand>ATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTGGCGGGGGGGCGAGGATCTGGATAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396393" ref_strand="+" ref_description="SGN-E396393 [TUS-35-L3]">
      <seq>attagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcaaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="11005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12148" g_stop="11956" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11305" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="460" r_length="266" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E396393" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12148" e_stop="11956"/>
          <exon e_start="11570" e_stop="11305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTA-CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACA</genome_strand>
        <mrna_strand>ATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAAAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392554" ref_strand="+" ref_description="SGN-E392554 [TUS-35-I20]">
      <seq>attatttcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcattttcttggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatcccttaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="11014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12148" g_stop="11956" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11314" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="452" r_length="258" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E392554" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12148" e_stop="11956"/>
          <exon e_start="11570" e_stop="11314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTAT-CCTTAAGTTT</genome_strand>
        <mrna_strand>ATTATTTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTTCTTGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCCTTAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246754" ref_strand="+" ref_description="SGN-E246754 [cLEF-45-B16]">
      <seq>caactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12285" stop="11049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11985" g_stop="11956" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11349" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="252" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E246754" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11985" e_stop="11956"/>
          <exon e_start="11570" e_stop="11349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTT</genome_strand>
        <mrna_strand>CAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244271" ref_strand="+" ref_description="SGN-E244271 [cLEF-37-C9]">
      <seq>tgttttcactattatttataagagaaacagatcgctataacaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="11056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12127" g_stop="11956" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11570" g_stop="11356" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="387" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E244271" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12127" e_stop="11956"/>
          <exon e_start="11570" e_stop="11356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTC</genome_strand>
        <mrna_strand>TGTTTTCACTATTATTTATAAGAGAAACAGATCGCTATAACAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262187" ref_strand="+" ref_description="SGN-E262187 [cLEG-58-H24]">
      <seq>cactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggtatactctgaaccaacagtggctcaagcatattaatggcctaaaacaaaaataaaacaagctttaaatttgaattgttaataactttaatatagttgatttcttttagtttttaattaataatataaccattcttatttttcatgagatataatactccaaatatgtcatatttcttctaatctgaattctgaattcttataaacatcaacttgtactattatggattaatacttatttatacgtataaaataaaattttgattatggttactaagttctaccttacccgaacctgtaactttctctctagctctgtccttgatcagttcgagttaattactttcaatttgtatgttttttaaatctaattatgttatgtgcaagaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccatacaggggtgtttggggcagctactgatcacattataaaatatggttctcaattctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="11092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12069" g_stop="11392" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E262187" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12069" e_stop="11392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCA</genome_strand>
        <mrna_strand>CACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAACAGTGGCTCAAGCATATTAATGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTATGTTTTTTAAATCTAATTATGTTATGTGCAAGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCATACAGGGGTGTTTGGGGCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254110" ref_strand="+" ref_description="SGN-E254110 [cLEG-34-A3]">
      <seq>gccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaacgagataactgattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggtatactctgaaccagcagtggctcaagcatattagtggcctaaaacaaaaataaaacaagctttaaatttgaattgttaataactttaatatagttgatttcttttagtttttaattaataatataaccattcttatttttcatgagatataatactccaaatatgtcatatttcttctaatctgaattctgaattcttataaacatcaacttgtactattatggattaatacttatttatacgtataaaataaaattttgattatggttactaagttctaccttacccgaacctgtaactttctctctagctctgtccttgatcagttcgagttaattactttcaatttgttttttttttaaatctaattatgttatgtgcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="11215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12071" g_stop="11515" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E254110" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12071" e_stop="11515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGT</genome_strand>
        <mrna_strand>GCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACGAGATAACTGATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262182" ref_strand="+" ref_description="SGN-E262182 [cLEG-58-H2]">
      <seq>actaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggtatactctgaaccagcagtggctcaagcatattagtggcctaaaacaaaaataaaacaagctttaaatttgaattgttaataactttaatatagttgatttcttttagtttttaattaataatataaccattcttatttttcatgagatataatactccaaatatgtcatatttcttctaatctgaattctgaattcttataaacatcaacttgtactattatggattaatacttatttatacgtataaaataaaattttgattatggttactaagttctaccttacccgaacctgtaactttctctctagctctgtccttgatcagntcgagttaattactttcaatttgttttttttttaaatctaattatgttatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12342" stop="11275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12068" g_stop="11575" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E262182" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12068" e_stop="11575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGT</genome_strand>
        <mrna_strand>ACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGNTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746151" ref_strand="+" ref_description="SGN-E746151 [GI|47104903]">
      <seq>ggattcatttttggggtttctggctttctctttctcttgaccactaatggcatcaagttcttgaatcaatgaaagttggatgtttttgttgaactaaagaaaggtgctttggctgtgaatctcaatagggttataaaggtttgatttttttgatctgtttgagtggttttgtgggattttcatttttactgtacttgtatgattgaacccttcttggagaaccatctttttcctcttttgagtgagagttgtttgctgtaatttttttctttgttaatctggaaattgggagaaagagagaaagaagcccctttgctagatttcctttgtgaaatcttgaaagttcttcaatttggtatctttttctggtaatgctaattgaagatttggggaatggctactttggtacctggtgttctattgaagcttcttcagcatatgaacacagatgtgaaagttgctggtgagcataggtcatctctgttgcaagtggtcagcattgtgcctgcattagcaggtggggagctttttcctaaccaagggttctacctaaaggtatcagattcttctcatgctacttatgtatctttgcctgatgaacatgatgatcttattcttagtgataagattcaattgggtcagttcattcatgttgagaggcttgaagctgcctcacctgtgcctatacttagaggggttaggcccgtccctggacgacacccttgtgttggaactcccgaagatatagtagcaactcattctttaggcttcctaaataacaatggtaatctgtctcctggttcaaaatcgcgagacaaaactaagtctccttcaaaagcattaggtaatagtcatgtggcggcgaaagataataaatctgcagtttcgagatcaaatggtggtaccaaacaggaaaaagtggaaaaaaagaagcctactttgacttggtcgaagtcccacttgtcaaagttagcattaaatgtagtggagaagaaggattctctaatgagagtaaaatcatcttctagctcaagatcaatacccacatctcctacaagttgttattcattaccgacttctttcgagaagttttcaaatggggttaagctacaagcaaaggttaagggcttggaacgtttggagaaagcaacaactaaacctggagtggagaagtctagttctgttcgtggggcgagtccaacaccgaagagactgctgggtgggaatccattgaagaattatcttcaaggactcgaattggagcctaaggccctgaggaagagctgggaagggaatatggatttgaagagtagagagagtcccagattgagggtcaacaagcatgatttgaagcctgaaccgaggagcacttctgttccaagaaaatcaactagtgaaaaattgactagtaaagaagataaccggggaatacttgcaaaatcatccaaagaggaaaataaggctcatacatccttaaagaagtccacaaatggagagcctgttgatgctgataaatcaagtaaccagaaaatatccaagggaagaaagcaacctggggaagtcaataatggcttacaagacttggtcgaagttgctgtcagtaatagaattttagcagatggaaatgttgcctggtcttcactcccatcttctctcacaaagattggaaaggaagtcatgaagcacagagacgccgcacaggtagcagccattgaggctatgcaggtggcttcggcttctgaaagcttactaagatgtctaagcacatattctgagttgagctcctcggcaaaggaagataacgcacagcctgctgttgagcaattcttggcgctgcatgcgagtttgaagaatgttcaccttgttggtgatgctttatccaagaccatatcagctgctggttcagaatcagatcatgaagaaaacccttctgaagaagcacttaaggctgtatcagaaaaacggaagcaagcaactctatgggtcaatgctgcgttggctaccaatctgtcatcattctcagtgtatagcaaaaaagcaacttcatctccaattgccccttcagctccctcgccaagcccaaagactatcgctctcaatcaacctatgctagtccttgataactcaaccaaaagtactcttgcaaaacctcaagccaaaccccgcccgacaatgagttctaagattcagtcatcaggatctcaacggcgcttagcagatgggatagcttctaatcaaaagccaaaatctcctcctccagcggattgggtcagaggagacggtcttgaagaggctgttgacttagccgagatgttacgagtagcgtcccaagactggttcttaggatttgtagaaaggttcttggatgctgatgttgatgcctcagctttatcagataatggtcaaatagccggcatgttatcccagctgaagagtgtgaacgactggttagatgagatctcctctagcaaggatgatgaaagtccccaaattgcttctgagaccatcgataggataagaaaaaagatctatgaatatcttctcactcatgtggagtctgctgcagcagctcttggtggtggcagtggcggtagctcacaagtgccacctacaatagaaaccaaaacgagaaaatgagttctattgcataatgcatactactagcaactcacctttcatatttgaagcatgctccaatagtccttcaaccgccaagtggttaaaagagctgaaagttttaggatgtgtatagattctaaaattggtcgaggtagagtagtttagtatatatattgtgcagacagggagttacatgaagttcaagatttccttttttctttacctggaaactttttctcataaattatgactagctcaaagtcgtgagtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16798" stop="24649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17097" g_stop="18470" g_length="1374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1374" r_length="1374" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18471" i_stop="18737" i_length="267">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18738" g_stop="19034" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1375" r_stop="1671" r_length="297" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19035" i_stop="19487" i_length="453">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19488" g_stop="19579" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1672" r_stop="1763" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19580" i_stop="23219" i_length="3640">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23220" g_stop="24344" g_length="1125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1764" r_stop="2888" r_length="1125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2889" polyA_stop="2903"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E746151" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2888</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17097" e_stop="18470"/>
          <exon e_start="18738" e_stop="19034"/>
          <exon e_start="19488" e_stop="19579"/>
          <exon e_start="23220" e_stop="24344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTCATTTTTGGGGTTTCTGGCTTTCTCTTTCTCTTGACCACTAATGGCATCAAGTTCTTGAATCAATGAAAGTTGGATGTTTTTGTTGAACTAAAGAAAGGTGCTTTGGCTGTGAATCTCAATAGGGTTATAAAGGTTTGATTTTTTTGATCTGTTTGAGTGGTTTTGTGGGATTTTCATTTTTACTGTACTTGTATGATTGAACCCTTCTTGGAGAACCATCTTTTTCCTCTTTTGAGTGAGAGTTGTTTGCTGTAATTTTTTTCTTTGTTAATCTGGAAATTGGGAGAAAGAGAGAAAGAAGCCCCTTTGCTAGATTTCCTTTGTGAAATCTTGAAAGTTCTTCAATTTGGTATCTTTTTCTGGTAATGCTAATTGAAGATTTGGGGAATGGCTACTTTGGTACCTGGTGTTCTATTGAAGCTTCTTCAGCATATGAACACAGATGTGAAAGTTGCTGGTGAGCATAGGTCATCTCTGTTGCAAGTGGTCAGCATTGTGCCTGCATTAGCAGGTGGGGAGCTTTTTCCTAACCAAGGGTTCTACCTAAAGGTATCAGATTCTTCTCATGCTACTTATGTATCTTTGCCTGATGAACATGATGATCTTATTCTTAGTGATAAGATTCAATTGGGTCAGTTCATTCATGTTGAGAGGCTTGAAGCTGCCTCACCTGTGCCTATACTTAGAGGGGTTAGGCCCGTCCCTGGACGACACCCTTGTGTTGGAACTCCCGAAGATATAGTAGCAACTCATTCTTTAGGCTTCCTAAATAACAATGGTAATCTGTCTCCTGGTTCAAAATCGCGAGACAAAACTAAGTCTCCTTCAAAAGCATTAGGTAATAGTCATGTGGCGGCGAAAGATAATAAATCTGCAGTTTCGAGATCAAATGGTGGTACCAAACAGGAAAAAGTGGAAAAAAAGAAGCCTACTTTGACTTGGTCGAAGTCCCACTTGTCAAAGTTAGCATTAAATGTAGTGGAGAAGAAGGATTCTCTAATGAGAGTAAAATCATCTTCTAGCTCAAGATCAATACCCACATCTCCTACAAGTTGTTATTCATTACCGACTTCTTTCGAGAAGTTTTCAAATGGGGTTAAGCTACAAGCAAAGGTTAAGGGCTTGGAACGTTTGGAGAAAGCAACAACTAAACCTGGAGTGGAGAAGTCTAGTTCTGTTCGTGGGGCGAGTCCAACACCGAAGAGACTGCTGGGTGGGAATCCATTGAAGAATTATCTTCAAGGACTCGAATTGGAGCCTAAGGCCCTGAGGAAGAGCTGGGAAGGGAATATGGATTTGAAGAGTAGAGAGAGTCCCAGATTGAGGGTCAACAAGCATGATTTGAAGCCTGAACCGAGGAGCACTTCTGTAAGTATTCTGTTTTCACCCTACCTTGTTATATAATGTTTCTAACTGTTGGGGTATTGGTTTAAACTGATTAAAATGTAAATCCACTTTCCCTTTTATGATTCAGGGCATAGGCTATGATTGGCTTTTAATGAAGTGAAATTTTGATCAATATTCTTGCAGGATTGTTTTCTGCAAGCAGCACGCCACCTTAAATTGTCATTTAATTATTTGATTCTTGATGCATTTAATAGATTTTGATACTCTATGTGAATTCCTTGATGGCAGGTTCCAAGAAAATCAACTAGTGAAAAATTGACTAGTAAAGAAGATAACCGGGGAATACTTGCAAAATCATCCAAAGAGGAAAATAAGGCTCATACATCCTTAAAGAAGTCCACAAATGGAGAGCCTGTTGATGCTGATAAATCAAGTAACCAGAAAATATCCAAGGGAAGAAAGCAACCTGGGGAAGTCAATAATGGCTTACAAGACTTGGTCAAAGTTGCTGTCAGTAATAGAATTTTAGCAGATGGAAATGTTGCCTGGTCTTCACTCCCATCTTCTCTCACAAAGATTGGAAAGGTTTGCCATTCTGAAGTGCTTGCATTCTTAACAGCTTGATGGCTTCTCCTGTTCACTCCTTAAATGTTATTCGTGTATATTACATCTATAACCATGTCTTACCCAGAGGTTTCTGTAGCAATTAAGACAGTTCTAACCATGTTAATGCAGTTCTTGTCATGTTTATATGCTGTGGTCTCAGAGTTATGTTTGCCTAGTATATTTCCTCTTTAGTTACAGATTTCTGAAAAGCATTTTCTGTTTTCCCATTTTTTCTAGTCACCTGATGGTCCTGTAGTTTAAAGGTTTTTTAATTTTTGAGTAGGCATGTGCAGCCATGTATTTGCTTGTGAAATCTTATCTTATTGGGCCATTAAAGTGCATTATCACACTGTTACCTTTTTCTTTTTTAAGTTTATTATCGGAGATTGAACTACTTATTTGATCTCTGAAAAATACCATTTTATGTTATAGGAAGTCATGAAGCACAGAGACGCCGCACAGGTAGCAGCCATTGAGGCTATGCAGGTGGCTTCGGCTTCTGAAAGCTTACTAAGATGTCTAAGGTAGTCCTGCTTCTTTTTTCCTTTTATTTTGGAAAGTAGAGATTTAAGGTACTTCTTTTTGAGTGCATTGTAAAGGTGAATTTTAAGCGCTGAAATCAGTTTATTTGCTTCAAGTTTAGACCCTTGAGCTAGGCAGCATGTTGTGTGTGTTGATAAGGTAATATATATCGATGTTGTGGCCTGTGGGGAGAAAACCCTGTATACAAGTTGTATAAAACCTAAAAATGGTTCTCTACCATAGACAATCTACACAATCAGGGAGCTTGTGAGTGCACCAAAAACTAATTAAAAGGGACTTCGTGGGTGCACCAAAAACTAATCAAAACGGACCTCGTGGATGCACCAAAAACTAATCAAAAGAGTTAGGTTATATCATATATGGCTCCACACGTGGCTTAATTCTGTATAATCAGTTGCCAACAAATTCGAGTTGGCACCTGGGCCTAACTCTACCCCAAAAGCTAAGCTCATGAGGGGAGGTTTGTCCAAGTCCATATAAAGACACCAATTTTTCATCCCTTTACCAATGTGGGACTTTTTTGGATGAGCTTAGCATGGGTGAAAAGCACCACTATATTCAACAATGTGGCATTTGCACCAGGAGTTAGCTGAATGGGACTATGTGCGTTAAAATCATGATCATCTTATCATCGCGATGCTGTGTTTAATTGCCTGTTATGGGTAGTGTTTGCGGGTGGTAAGCTGGACCTCAGATTGGTAACATAACAGCTTCGATTACCTATACCCTCTTGTGGACAAGAGTAGTTCACTGTCAATTTCTCATTTTACCATTTCTTGCCTAAAATACAACAAATGAACAGTTCCGTCATATACCATATAGGTGAGGGGCTAGTTGCTGAAAGGGACTGTCAGGTATCTGATTATGGTTAGACGACTACCACTGCTAATCCTCAACTTAGCTTATTTTCATCTATTCAGCAACCTTACTTTTTCGGGAATAGATTATAGCTTCTGTTCATATGCATGATTCTAGTCCTCCAGTTTAGGATATCGACTCTAAGCAGGACGGTTGACATGCAACTGGATGAGCCAGAATATATTTGCAGATAAGACTCTCCACATGCCTACTGAAAAGGTTAGGAGGATTGATTAGGTTAGGCGAACAAAATTCTGCCTTAGAACTGATTCTTTCGTAGGCTATTTTGGTTCCAGTTTTGCTGTTGGCGCCTGTTGCCCACCTAAAAAGAAAAGTTAATGTTCTGATGCTTCGGCTTCCTTCACTTTTCAGTACTCCAGCATGGTCCGGTCATGTGAAGAGGAATTGTGTGGATTTACCCGTAAGGAGGTGTTACACATTGACTATAATAGAAGTTAGGAGGGATAGAGATAGGCCGAAGAAGAACATGAGGGAGTTAATTAGATAAGGAATGGCATAACTACACAACCCTAGATAGGAAGGTATGAAGGTTTAAAATTTGGGTAGAAGAATAGGAGGTAGCCGAGGCAGGGACTAGACTCCTCTCTGCTCCTTCACATGACAGCCAGTTGAAATGTGTCTCACTGGATTTATACTCTCATATAATGAAGCCAAAATGTTTACTAGTTTGTTTGGATAGCAATATTTTCTTCTTGTTGAATGAGAAAAGTGACCACCCAAAGATCTTCCGCCGTGCAATTTTCAGTAACGTTTTCTGGTTTGATCATTGTTGCTTCAATTTCAATTTTACATGGTAAAAGTTGGAGTTAATATCTATAAAGTTCTTGATCATGCTAGCAATTGCATTTTCTTAATCAGGGTGCTTGAAATCTGACACGAATAGATTTTAGCGAAAAATGATATGAGATAAATATGATTTGATTTTCAGCCTTTGAATGTTTTTCGTCATTAGAGTAATGTCTGTTTTCTAAAGTTAGAAGGAATCCACATTGTTATGGGCTTCTTGACCGAGTCATCTTGGACCTTTTGTGATAACAATGTTGAATAGATCTTTTTCCAACCTGAATTACTGCAAAAGGTAAAAGAAAGGAAGGAAAAATGCAATCCAGCCGGCCCCATTTTCCACCTATAAATTACAGACCATACCTTTTTAATGCTACTACAGTAACTCTTTAACAAAAAGGAAGAAATATTCCCTTCTAGCAACCAATGGGCCCTTCCAGCCAATAATGTTGGTTTTCCAGCAGAAGTGCCAGAAGGGATTAAGTTTCAGCTGGATGTGGGCAGGTCAGCTTTGTGCTCCTCGATTAATTCCATGGACTACTTGCCACCCAAGCTGCACCGACTCTTCAATTTCGATGTTACACCCGTGTCGGATTTGAAGAGCCCGAGCAACATAGCTTGCCACCTCCCACCAACAAGAGGTATCAGGTAACTGATGAGTCTATCAAGGCTAACACAGATGACAAGAAACCATCTAGTGTTATCTCTTGGTTATCAACCACCTCATTGACCACTAGACCACACCCTTGAGTGCAGGTTGCTCTGCATCTTTTTGATGCTTTTGGATGAAATTCATTTACTTCATCAAGAAAAAAAAGAAAGGAATAGTTCTGTAGAATATTCTAGTTATGTTTCTAATTATTCATGGTAGACTGATTAGCAAGTTAAATCAATGTGTTGGGTTAATATCGAATAAGGATTACTTTGCTATCCTACACAAATAGTGGATCATGGTTCTTTCTTTTTTTTTTTCTTAGTTCTTTTTATGAAGATAATTTCATTAAATGGCATCAAGAAGATGAATAGCAAAAATATACAACAGAAGAGTATCTGCTTATATACAAATTTTACTGAAGAACTAAGGAGCATACATTATCCAAAAGAAAATTCAATACTAGTTACAGGGGCCTGATTGAACCAACTAAATAAATTGATCAGACATTTAGCTTTAAGAGTGTGATTAGGAGTTGAAATCCCCTCTAAGCATCTACATTTCCTCGCACTCCAGATGCACCAAAATATAGCAGCAGACATCATTTGCCAATTCTTTCGATGGATTTCCATTAGCATCCTATACCCAGCGAAGTCCAAAGACTGATAAAAATATGCTCCAAATGTCAGCTGCTGTTGTACAGTGTAGAAACAACTGTCTCACTCTCTCAGATTCCTCCTGGCACATATAGCATCTATCACTTTCTTAATGCTTCTTCGGCTAAGGTTGTCTTGAGTAAGGCAGCCATCACACATTGTTGTCTAGATGAAACCAATTACTTATATGGGGGTTTCTGATTTCCTATAAGCTTACATGTCCATTTGTCAATCAGTTCCTCGTTGGATCATAGATTTGCCATGTCCTCTTTTGATATTGTAGGTCTATCTTTGGACCCTTCCCGTTTCTAATCTGTCCTGCACCTGAGAGTTGACCATAAAATCTGATATTTTTATAAGCAATCCCTGAAGAGTCATTTAACTCCAATCCTGGATATCCCTTTTGAATTGTCCCGGCCATGAGTTATCTTGCCAGTACTGTGCCACATTGGTGTTTCTATTATTGGCTGGTAAAAATTAACTTGGATATACATCTTTCAGAATCTCCGGACCATGGTTCGGTTTTAGGGGTTATTATGAACTTTCAAACAGTGGTATCTCTACAATTTGTTTGTTCATCAGTGCATCAACTGAAGTTTTTTTTTATTACACAAATTTACAACTGCTGATTGTTCAATTTCAATTGTTCAGCACATATTCTGAGTTGAGCTCCTCGGCAAAGGAAGATAACGCACAGCCTGCTGTTGAGCAATTCTTGGCGCTGCATGCGAGTTTGAAGAATGTTCACCTTGTTGGTGATGCTTTATCCAAGACCATATCAGCTGCTGGTTCAGAATCAGATCATGAAGAAAACCCTTCTGAAGAAGCACTTAAGGCTGTATCAGAAAAACGGAAGCAAGCAACTCTATGGGTCAATGCTGCGTTGGCTACCAATCTGTCATCATTCTCAGTGTATAGCAAAAAAGCAACTTCATCTCCAATTGCCCCTTCAGCTCCCTCGCCAAGCCCAAAGACTATCGCTCTCAATCAACCTATGCTAGTCCTTGATAACTCAACCAAAAGTACTCTTGCAAAACCTCAAGCCAAACCCCGCCCGACAATGAGTTCTAAGATTCAGTCATCAGGATCTCAACGGCGCTTAGCAGATGGGATAGCTTCTAATCAAAAGCCAAAATCTCCTCCTCCAGCGGATTGGGTCAGAGGAGACGGTCTTGAAGAGGCTGTTGACTTAGCCGAGATGTTACGAGTAGCGTCCCAAGACTGGTTCTTAGGATTTGTAGAAAGGTTCTTGGATGCTGATGTTGATGCCTCAGCTTTATCAGATAATGGTCAAATAGCCGGCATGTTATCCCAGCTGAAGAGTGTGAACGACTGGTTAGATGAGATCTCCTCTAGCAAGGATGATGAAAGTCCCCAAATTGCTTCTGAGACCATCGATAGGATAAGAAAAAAGATCTATGAATATCTTCTCACTCATGTGGAGTCTGCTGCAGCAGCTCTTGGTGGTGGCAGTGGCGGTAGCTCACAAGTGCCACCTACAATAGAAACCAAAACGAGAAAATGAGTTCTATTGCATAATGCATACTACTAGCAACTCACCTTTCATATTTGAAGCATGCTCCAATAGTCCTTCAACCGCCAAGTGGTTAAAAGAGCTGAAAGTTTTAGGATGTGTATAGATTCTAAAATTGGTCGAGGTAGAGTAGTTTAGTATATATATTGTGCAGACAGGGAGTTACATGAAGTTCAAGATTTCCTTTTTTCTTTACCTGGAAACTTTTTCTCATAAATTATGACTAGCTCAAAGTCGTGAGT</genome_strand>
        <mrna_strand>GGATTCATTTTTGGGGTTTCTGGCTTTCTCTTTCTCTTGACCACTAATGGCATCAAGTTCTTGAATCAATGAAAGTTGGATGTTTTTGTTGAACTAAAGAAAGGTGCTTTGGCTGTGAATCTCAATAGGGTTATAAAGGTTTGATTTTTTTGATCTGTTTGAGTGGTTTTGTGGGATTTTCATTTTTACTGTACTTGTATGATTGAACCCTTCTTGGAGAACCATCTTTTTCCTCTTTTGAGTGAGAGTTGTTTGCTGTAATTTTTTTCTTTGTTAATCTGGAAATTGGGAGAAAGAGAGAAAGAAGCCCCTTTGCTAGATTTCCTTTGTGAAATCTTGAAAGTTCTTCAATTTGGTATCTTTTTCTGGTAATGCTAATTGAAGATTTGGGGAATGGCTACTTTGGTACCTGGTGTTCTATTGAAGCTTCTTCAGCATATGAACACAGATGTGAAAGTTGCTGGTGAGCATAGGTCATCTCTGTTGCAAGTGGTCAGCATTGTGCCTGCATTAGCAGGTGGGGAGCTTTTTCCTAACCAAGGGTTCTACCTAAAGGTATCAGATTCTTCTCATGCTACTTATGTATCTTTGCCTGATGAACATGATGATCTTATTCTTAGTGATAAGATTCAATTGGGTCAGTTCATTCATGTTGAGAGGCTTGAAGCTGCCTCACCTGTGCCTATACTTAGAGGGGTTAGGCCCGTCCCTGGACGACACCCTTGTGTTGGAACTCCCGAAGATATAGTAGCAACTCATTCTTTAGGCTTCCTAAATAACAATGGTAATCTGTCTCCTGGTTCAAAATCGCGAGACAAAACTAAGTCTCCTTCAAAAGCATTAGGTAATAGTCATGTGGCGGCGAAAGATAATAAATCTGCAGTTTCGAGATCAAATGGTGGTACCAAACAGGAAAAAGTGGAAAAAAAGAAGCCTACTTTGACTTGGTCGAAGTCCCACTTGTCAAAGTTAGCATTAAATGTAGTGGAGAAGAAGGATTCTCTAATGAGAGTAAAATCATCTTCTAGCTCAAGATCAATACCCACATCTCCTACAAGTTGTTATTCATTACCGACTTCTTTCGAGAAGTTTTCAAATGGGGTTAAGCTACAAGCAAAGGTTAAGGGCTTGGAACGTTTGGAGAAAGCAACAACTAAACCTGGAGTGGAGAAGTCTAGTTCTGTTCGTGGGGCGAGTCCAACACCGAAGAGACTGCTGGGTGGGAATCCATTGAAGAATTATCTTCAAGGACTCGAATTGGAGCCTAAGGCCCTGAGGAAGAGCTGGGAAGGGAATATGGATTTGAAGAGTAGAGAGAGTCCCAGATTGAGGGTCAACAAGCATGATTTGAAGCCTGAACCGAGGAGCACTTCT...........................................................................................................................................................................................................................................................................GTTCCAAGAAAATCAACTAGTGAAAAATTGACTAGTAAAGAAGATAACCGGGGAATACTTGCAAAATCATCCAAAGAGGAAAATAAGGCTCATACATCCTTAAAGAAGTCCACAAATGGAGAGCCTGTTGATGCTGATAAATCAAGTAACCAGAAAATATCCAAGGGAAGAAAGCAACCTGGGGAAGTCAATAATGGCTTACAAGACTTGGTCGAAGTTGCTGTCAGTAATAGAATTTTAGCAGATGGAAATGTTGCCTGGTCTTCACTCCCATCTTCTCTCACAAAGATTGGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTCATGAAGCACAGAGACGCCGCACAGGTAGCAGCCATTGAGGCTATGCAGGTGGCTTCGGCTTCTGAAAGCTTACTAAGATGTCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATATTCTGAGTTGAGCTCCTCGGCAAAGGAAGATAACGCACAGCCTGCTGTTGAGCAATTCTTGGCGCTGCATGCGAGTTTGAAGAATGTTCACCTTGTTGGTGATGCTTTATCCAAGACCATATCAGCTGCTGGTTCAGAATCAGATCATGAAGAAAACCCTTCTGAAGAAGCACTTAAGGCTGTATCAGAAAAACGGAAGCAAGCAACTCTATGGGTCAATGCTGCGTTGGCTACCAATCTGTCATCATTCTCAGTGTATAGCAAAAAAGCAACTTCATCTCCAATTGCCCCTTCAGCTCCCTCGCCAAGCCCAAAGACTATCGCTCTCAATCAACCTATGCTAGTCCTTGATAACTCAACCAAAAGTACTCTTGCAAAACCTCAAGCCAAACCCCGCCCGACAATGAGTTCTAAGATTCAGTCATCAGGATCTCAACGGCGCTTAGCAGATGGGATAGCTTCTAATCAAAAGCCAAAATCTCCTCCTCCAGCGGATTGGGTCAGAGGAGACGGTCTTGAAGAGGCTGTTGACTTAGCCGAGATGTTACGAGTAGCGTCCCAAGACTGGTTCTTAGGATTTGTAGAAAGGTTCTTGGATGCTGATGTTGATGCCTCAGCTTTATCAGATAATGGTCAAATAGCCGGCATGTTATCCCAGCTGAAGAGTGTGAACGACTGGTTAGATGAGATCTCCTCTAGCAAGGATGATGAAAGTCCCCAAATTGCTTCTGAGACCATCGATAGGATAAGAAAAAAGATCTATGAATATCTTCTCACTCATGTGGAGTCTGCTGCAGCAGCTCTTGGTGGTGGCAGTGGCGGTAGCTCACAAGTGCCACCTACAATAGAAACCAAAACGAGAAAATGAGTTCTATTGCATAATGCATACTACTAGCAACTCACCTTTCATATTTGAAGCATGCTCCAATAGTCCTTCAACCGCCAAGTGGTTAAAAGAGCTGAAAGTTTTAGGATGTGTATAGATTCTAAAATTGGTCGAGGTAGAGTAGTTTAGTATATATATTGTGCAGACAGGGAGTTACATGAAGTTCAAGATTTCCTTTTTTCTTTACCTGGAAACTTTTTCTCATAAATTATGACTAGCTCAAAGTCGTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703005" ref_strand="+" ref_description="SGN-E703005 [FA20BB12]">
      <seq>caggaattcggcacgagggccactcattctttaggcttcctaaataacaatggtaatctgtctcctggttcaaaatcgcgagacaaaactaagtctccttcaaaagcattaggtaatagtcatgtggcggcgaaagataataaatctgcagtttcgagatcaaatggtggtaccaaacaggaaaaagtggaaaaaaagaagcctactttgacttggtcgaagtcccacttgtcaaagttagcattaaatgtagtggagaagaaggattctctaatgagagtaaaatcatcttctagctcaagatcaatacccacatctcctacaagttgttattcattaccgacttctttcgagaagttttcaaatggggttaagctacaagcaaaggttaagggcttggaacgtttggagaaagcaacaactaaacctggagtggagaagtctagttctgttcgtggggcgagtccaacaccgaagagactgctgggtgggaatccattgaagaattatcttcaaggactcgaattggagcctaaggccctgaggaagagctgggaagggaatatggatttgaagagtagagagagtcccagattgagggtcaacaagcatgatttgaagcctgaaccgaggagcacttctgttccaagaaaatcaactagtgaaaaattgactagtaaagaagataaccggggaatacttgcaaaatcatccaaagaggaaaataaggctcatacatccttaaagaagtccacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17547" stop="19152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17848" g_stop="18470" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="642" r_length="623" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18471" i_stop="18737" i_length="267">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18738" g_stop="18852" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="757" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E703005" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17848" e_stop="18470"/>
          <exon e_start="18738" e_stop="18852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCATTCTTTAGGCTTCCTAAATAACAATGGTAATCTGTCTCCTGGTTCAAAATCGCGAGACAAAACTAAGTCTCCTTCAAAAGCATTAGGTAATAGTCATGTGGCGGCGAAAGATAATAAATCTGCAGTTTCGAGATCAAATGGTGGTACCAAACAGGAAAAAGTGGAAAAAAAGAAGCCTACTTTGACTTGGTCGAAGTCCCACTTGTCAAAGTTAGCATTAAATGTAGTGGAGAAGAAGGATTCTCTAATGAGAGTAAAATCATCTTCTAGCTCAAGATCAATACCCACATCTCCTACAAGTTGTTATTCATTACCGACTTCTTTCGAGAAGTTTTCAAATGGGGTTAAGCTACAAGCAAAGGTTAAGGGCTTGGAACGTTTGGAGAAAGCAACAACTAAACCTGGAGTGGAGAAGTCTAGTTCTGTTCGTGGGGCGAGTCCAACACCGAAGAGACTGCTGGGTGGGAATCCATTGAAGAATTATCTTCAAGGACTCGAATTGGAGCCTAAGGCCCTGAGGAAGAGCTGGGAAGGGAATATGGATTTGAAGAGTAGAGAGAGTCCCAGATTGAGGGTCAACAAGCATGATTTGAAGCCTGAACCGAGGAGCACTTCTGTAAGTATTCTGTTTTCACCCTACCTTGTTATATAATGTTTCTAACTGTTGGGGTATTGGTTTAAACTGATTAAAATGTAAATCCACTTTCCCTTTTATGATTCAGGGCATAGGCTATGATTGGCTTTTAATGAAGTGAAATTTTGATCAATATTCTTGCAGGATTGTTTTCTGCAAGCAGCACGCCACCTTAAATTGTCATTTAATTATTTGATTCTTGATGCATTTAATAGATTTTGATACTCTATGTGAATTCCTTGATGGCAGGTTCCAAGAAAATCAACTAGTGAAAAATTGACTAGTAAAGAAGATAACCGGGGAATACTTGCAAAATCATCCAAAGAGGAAAATAAGGCTCATACATCCTTAAAGAAGTCCACAA</genome_strand>
        <mrna_strand>CCACTCATTCTTTAGGCTTCCTAAATAACAATGGTAATCTGTCTCCTGGTTCAAAATCGCGAGACAAAACTAAGTCTCCTTCAAAAGCATTAGGTAATAGTCATGTGGCGGCGAAAGATAATAAATCTGCAGTTTCGAGATCAAATGGTGGTACCAAACAGGAAAAAGTGGAAAAAAAGAAGCCTACTTTGACTTGGTCGAAGTCCCACTTGTCAAAGTTAGCATTAAATGTAGTGGAGAAGAAGGATTCTCTAATGAGAGTAAAATCATCTTCTAGCTCAAGATCAATACCCACATCTCCTACAAGTTGTTATTCATTACCGACTTCTTTCGAGAAGTTTTCAAATGGGGTTAAGCTACAAGCAAAGGTTAAGGGCTTGGAACGTTTGGAGAAAGCAACAACTAAACCTGGAGTGGAGAAGTCTAGTTCTGTTCGTGGGGCGAGTCCAACACCGAAGAGACTGCTGGGTGGGAATCCATTGAAGAATTATCTTCAAGGACTCGAATTGGAGCCTAAGGCCCTGAGGAAGAGCTGGGAAGGGAATATGGATTTGAAGAGTAGAGAGAGTCCCAGATTGAGGGTCAACAAGCATGATTTGAAGCCTGAACCGAGGAGCACTTCT...........................................................................................................................................................................................................................................................................GTTCCAAGAAAATCAACTAGTGAAAAATTGACTAGTAAAGAAGATAACCGGGGAATACTTGCAAAATCATCCAAAGAGGAAAATAAGGCTCATACATCCTTAAAGAAGTCCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736916" ref_strand="+" ref_description="SGN-E736916 [LC07DB08]">
      <seq>agataataaatctgcagtttcgagatcaaatggtggtaccaaacaggaaaaagtggaaaaaaagaagcctactttgacttggtcgaagtcccacttgtcaaagttagcattaaatgtagtggagaagaaggattctctaatgagagtaaaatcatcttctagctcaagatcaatacccacatctcctacaagttgttattcattaccgacttctttcgagaagttttcaaatggggttaagctacaagcaaaggttaagggcttggaacgtttggagaaagcaacaactaaacctggagtggagaagtctagttctgttcgtggggcgagtccaacaccgaagagactgctgggtgggaatccattgaagaattatcttcaaggactcgaattggagcctaaggccctgaggaagagctgggaagggaatatggatttgaagagtagagagagtcccagattgagggtcaacaagcatgatttgaagcctgaaccgaggagcacttctgttccaagaaaatcaactagtgaaaaattgactagtaaagaagataaccggggaatacttgcaaaatcatccaaagaggaaaataaggctcatacatccttaaagaagtccacaaatggagagcctgttgatgctgataaatcaagtaaccagaaaatatccaagggaagaaagcaacctggggaagtcaataatggcttacaagacttggtcaaagttgctgtcagtaatagaattttagcagatggaaatgttgcctggtcttcactcccatcttctctcacaaagattggaaaggaagtcatgaagcacagagacgccgcacaggtagcagccattgaggctatgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17663" stop="19841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17963" g_stop="18470" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18471" i_stop="18737" i_length="267">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18738" g_stop="19034" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="805" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19035" i_stop="19487" i_length="453">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19488" g_stop="19541" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="806" r_stop="859" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E736916" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17963" e_stop="18470"/>
          <exon e_start="18738" e_stop="19034"/>
          <exon e_start="19488" e_stop="19541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAATAAATCTGCAGTTTCGAGATCAAATGGTGGTACCAAACAGGAAAAAGTGGAAAAAAAGAAGCCTACTTTGACTTGGTCGAAGTCCCACTTGTCAAAGTTAGCATTAAATGTAGTGGAGAAGAAGGATTCTCTAATGAGAGTAAAATCATCTTCTAGCTCAAGATCAATACCCACATCTCCTACAAGTTGTTATTCATTACCGACTTCTTTCGAGAAGTTTTCAAATGGGGTTAAGCTACAAGCAAAGGTTAAGGGCTTGGAACGTTTGGAGAAAGCAACAACTAAACCTGGAGTGGAGAAGTCTAGTTCTGTTCGTGGGGCGAGTCCAACACCGAAGAGACTGCTGGGTGGGAATCCATTGAAGAATTATCTTCAAGGACTCGAATTGGAGCCTAAGGCCCTGAGGAAGAGCTGGGAAGGGAATATGGATTTGAAGAGTAGAGAGAGTCCCAGATTGAGGGTCAACAAGCATGATTTGAAGCCTGAACCGAGGAGCACTTCTGTAAGTATTCTGTTTTCACCCTACCTTGTTATATAATGTTTCTAACTGTTGGGGTATTGGTTTAAACTGATTAAAATGTAAATCCACTTTCCCTTTTATGATTCAGGGCATAGGCTATGATTGGCTTTTAATGAAGTGAAATTTTGATCAATATTCTTGCAGGATTGTTTTCTGCAAGCAGCACGCCACCTTAAATTGTCATTTAATTATTTGATTCTTGATGCATTTAATAGATTTTGATACTCTATGTGAATTCCTTGATGGCAGGTTCCAAGAAAATCAACTAGTGAAAAATTGACTAGTAAAGAAGATAACCGGGGAATACTTGCAAAATCATCCAAAGAGGAAAATAAGGCTCATACATCCTTAAAGAAGTCCACAAATGGAGAGCCTGTTGATGCTGATAAATCAAGTAACCAGAAAATATCCAAGGGAAGAAAGCAACCTGGGGAAGTCAATAATGGCTTACAAGACTTGGTCAAAGTTGCTGTCAGTAATAGAATTTTAGCAGATGGAAATGTTGCCTGGTCTTCACTCCCATCTTCTCTCACAAAGATTGGAAAGGTTTGCCATTCTGAAGTGCTTGCATTCTTAACAGCTTGATGGCTTCTCCTGTTCACTCCTTAAATGTTATTCGTGTATATTACATCTATAACCATGTCTTACCCAGAGGTTTCTGTAGCAATTAAGACAGTTCTAACCATGTTAATGCAGTTCTTGTCATGTTTATATGCTGTGGTCTCAGAGTTATGTTTGCCTAGTATATTTCCTCTTTAGTTACAGATTTCTGAAAAGCATTTTCTGTTTTCCCATTTTTTCTAGTCACCTGATGGTCCTGTAGTTTAAAGGTTTTTTAATTTTTGAGTAGGCATGTGCAGCCATGTATTTGCTTGTGAAATCTTATCTTATTGGGCCATTAAAGTGCATTATCACACTGTTACCTTTTTCTTTTTTAAGTTTATTATCGGAGATTGAACTACTTATTTGATCTCTGAAAAATACCATTTTATGTTATAGGAAGTCATGAAGCACAGAGACGCCGCACAGGTAGCAGCCATTGAGGCTATGCAG</genome_strand>
        <mrna_strand>AGATAATAAATCTGCAGTTTCGAGATCAAATGGTGGTACCAAACAGGAAAAAGTGGAAAAAAAGAAGCCTACTTTGACTTGGTCGAAGTCCCACTTGTCAAAGTTAGCATTAAATGTAGTGGAGAAGAAGGATTCTCTAATGAGAGTAAAATCATCTTCTAGCTCAAGATCAATACCCACATCTCCTACAAGTTGTTATTCATTACCGACTTCTTTCGAGAAGTTTTCAAATGGGGTTAAGCTACAAGCAAAGGTTAAGGGCTTGGAACGTTTGGAGAAAGCAACAACTAAACCTGGAGTGGAGAAGTCTAGTTCTGTTCGTGGGGCGAGTCCAACACCGAAGAGACTGCTGGGTGGGAATCCATTGAAGAATTATCTTCAAGGACTCGAATTGGAGCCTAAGGCCCTGAGGAAGAGCTGGGAAGGGAATATGGATTTGAAGAGTAGAGAGAGTCCCAGATTGAGGGTCAACAAGCATGATTTGAAGCCTGAACCGAGGAGCACTTCT...........................................................................................................................................................................................................................................................................GTTCCAAGAAAATCAACTAGTGAAAAATTGACTAGTAAAGAAGATAACCGGGGAATACTTGCAAAATCATCCAAAGAGGAAAATAAGGCTCATACATCCTTAAAGAAGTCCACAAATGGAGAGCCTGTTGATGCTGATAAATCAAGTAACCAGAAAATATCCAAGGGAAGAAAGCAACCTGGGGAAGTCAATAATGGCTTACAAGACTTGGTCAAAGTTGCTGTCAGTAATAGAATTTTAGCAGATGGAAATGTTGCCTGGTCTTCACTCCCATCTTCTCTCACAAAGATTGGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTCATGAAGCACAGAGACGCCGCACAGGTAGCAGCCATTGAGGCTATGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272196" ref_strand="+" ref_description="SGN-E272196 [cLEM-19-C23]">
      <seq>gtgccgaattcggcacgaggctgaaagcttactaagatgtctaagcacatattctgagttgagctcctcggcaaaggaagataacgcacagcctgctgttgagcaattcttggcgctgcatgcgagtttgaagaatgttcaccttgttggtgatgctttatccaagaccatatcagctgctggttcagaatcagatcatgaagaaaacccttctgaagaagcacttaaggctgtatcagaaaaacggaagcaagcaactctatgggtcaatgctgcgttggctaccaatctgtcatcattctcagtgtatagcaaaaaagcaacttcatctccaattgccccttcagctccctcgccaagcccaaagactatcgctctcaatcaacctatgctagtccttgataactcaaccaaaagtactcttgcaaaacctcaagccaaaccccgcccgacaatgagttctaagattcagtcatcaggatctcaacggcgcttagcagatgggatagcttctaatcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19255" stop="23996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19555" g_stop="19579" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="45" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19580" i_stop="23219" i_length="3640">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23220" g_stop="23696" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="522" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E272196" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19555" e_stop="19579"/>
          <exon e_start="23220" e_stop="23696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAGCTTACTAAGATGTCTAAGGTAGTCCTGCTTCTTTTTTCCTTTTATTTTGGAAAGTAGAGATTTAAGGTACTTCTTTTTGAGTGCATTGTAAAGGTGAATTTTAAGCGCTGAAATCAGTTTATTTGCTTCAAGTTTAGACCCTTGAGCTAGGCAGCATGTTGTGTGTGTTGATAAGGTAATATATATCGATGTTGTGGCCTGTGGGGAGAAAACCCTGTATACAAGTTGTATAAAACCTAAAAATGGTTCTCTACCATAGACAATCTACACAATCAGGGAGCTTGTGAGTGCACCAAAAACTAATTAAAAGGGACTTCGTGGGTGCACCAAAAACTAATCAAAACGGACCTCGTGGATGCACCAAAAACTAATCAAAAGAGTTAGGTTATATCATATATGGCTCCACACGTGGCTTAATTCTGTATAATCAGTTGCCAACAAATTCGAGTTGGCACCTGGGCCTAACTCTACCCCAAAAGCTAAGCTCATGAGGGGAGGTTTGTCCAAGTCCATATAAAGACACCAATTTTTCATCCCTTTACCAATGTGGGACTTTTTTGGATGAGCTTAGCATGGGTGAAAAGCACCACTATATTCAACAATGTGGCATTTGCACCAGGAGTTAGCTGAATGGGACTATGTGCGTTAAAATCATGATCATCTTATCATCGCGATGCTGTGTTTAATTGCCTGTTATGGGTAGTGTTTGCGGGTGGTAAGCTGGACCTCAGATTGGTAACATAACAGCTTCGATTACCTATACCCTCTTGTGGACAAGAGTAGTTCACTGTCAATTTCTCATTTTACCATTTCTTGCCTAAAATACAACAAATGAACAGTTCCGTCATATACCATATAGGTGAGGGGCTAGTTGCTGAAAGGGACTGTCAGGTATCTGATTATGGTTAGACGACTACCACTGCTAATCCTCAACTTAGCTTATTTTCATCTATTCAGCAACCTTACTTTTTCGGGAATAGATTATAGCTTCTGTTCATATGCATGATTCTAGTCCTCCAGTTTAGGATATCGACTCTAAGCAGGACGGTTGACATGCAACTGGATGAGCCAGAATATATTTGCAGATAAGACTCTCCACATGCCTACTGAAAAGGTTAGGAGGATTGATTAGGTTAGGCGAACAAAATTCTGCCTTAGAACTGATTCTTTCGTAGGCTATTTTGGTTCCAGTTTTGCTGTTGGCGCCTGTTGCCCACCTAAAAAGAAAAGTTAATGTTCTGATGCTTCGGCTTCCTTCACTTTTCAGTACTCCAGCATGGTCCGGTCATGTGAAGAGGAATTGTGTGGATTTACCCGTAAGGAGGTGTTACACATTGACTATAATAGAAGTTAGGAGGGATAGAGATAGGCCGAAGAAGAACATGAGGGAGTTAATTAGATAAGGAATGGCATAACTACACAACCCTAGATAGGAAGGTATGAAGGTTTAAAATTTGGGTAGAAGAATAGGAGGTAGCCGAGGCAGGGACTAGACTCCTCTCTGCTCCTTCACATGACAGCCAGTTGAAATGTGTCTCACTGGATTTATACTCTCATATAATGAAGCCAAAATGTTTACTAGTTTGTTTGGATAGCAATATTTTCTTCTTGTTGAATGAGAAAAGTGACCACCCAAAGATCTTCCGCCGTGCAATTTTCAGTAACGTTTTCTGGTTTGATCATTGTTGCTTCAATTTCAATTTTACATGGTAAAAGTTGGAGTTAATATCTATAAAGTTCTTGATCATGCTAGCAATTGCATTTTCTTAATCAGGGTGCTTGAAATCTGACACGAATAGATTTTAGCGAAAAATGATATGAGATAAATATGATTTGATTTTCAGCCTTTGAATGTTTTTCGTCATTAGAGTAATGTCTGTTTTCTAAAGTTAGAAGGAATCCACATTGTTATGGGCTTCTTGACCGAGTCATCTTGGACCTTTTGTGATAACAATGTTGAATAGATCTTTTTCCAACCTGAATTACTGCAAAAGGTAAAAGAAAGGAAGGAAAAATGCAATCCAGCCGGCCCCATTTTCCACCTATAAATTACAGACCATACCTTTTTAATGCTACTACAGTAACTCTTTAACAAAAAGGAAGAAATATTCCCTTCTAGCAACCAATGGGCCCTTCCAGCCAATAATGTTGGTTTTCCAGCAGAAGTGCCAGAAGGGATTAAGTTTCAGCTGGATGTGGGCAGGTCAGCTTTGTGCTCCTCGATTAATTCCATGGACTACTTGCCACCCAAGCTGCACCGACTCTTCAATTTCGATGTTACACCCGTGTCGGATTTGAAGAGCCCGAGCAACATAGCTTGCCACCTCCCACCAACAAGAGGTATCAGGTAACTGATGAGTCTATCAAGGCTAACACAGATGACAAGAAACCATCTAGTGTTATCTCTTGGTTATCAACCACCTCATTGACCACTAGACCACACCCTTGAGTGCAGGTTGCTCTGCATCTTTTTGATGCTTTTGGATGAAATTCATTTACTTCATCAAGAAAAAAAAGAAAGGAATAGTTCTGTAGAATATTCTAGTTATGTTTCTAATTATTCATGGTAGACTGATTAGCAAGTTAAATCAATGTGTTGGGTTAATATCGAATAAGGATTACTTTGCTATCCTACACAAATAGTGGATCATGGTTCTTTCTTTTTTTTTTTCTTAGTTCTTTTTATGAAGATAATTTCATTAAATGGCATCAAGAAGATGAATAGCAAAAATATACAACAGAAGAGTATCTGCTTATATACAAATTTTACTGAAGAACTAAGGAGCATACATTATCCAAAAGAAAATTCAATACTAGTTACAGGGGCCTGATTGAACCAACTAAATAAATTGATCAGACATTTAGCTTTAAGAGTGTGATTAGGAGTTGAAATCCCCTCTAAGCATCTACATTTCCTCGCACTCCAGATGCACCAAAATATAGCAGCAGACATCATTTGCCAATTCTTTCGATGGATTTCCATTAGCATCCTATACCCAGCGAAGTCCAAAGACTGATAAAAATATGCTCCAAATGTCAGCTGCTGTTGTACAGTGTAGAAACAACTGTCTCACTCTCTCAGATTCCTCCTGGCACATATAGCATCTATCACTTTCTTAATGCTTCTTCGGCTAAGGTTGTCTTGAGTAAGGCAGCCATCACACATTGTTGTCTAGATGAAACCAATTACTTATATGGGGGTTTCTGATTTCCTATAAGCTTACATGTCCATTTGTCAATCAGTTCCTCGTTGGATCATAGATTTGCCATGTCCTCTTTTGATATTGTAGGTCTATCTTTGGACCCTTCCCGTTTCTAATCTGTCCTGCACCTGAGAGTTGACCATAAAATCTGATATTTTTATAAGCAATCCCTGAAGAGTCATTTAACTCCAATCCTGGATATCCCTTTTGAATTGTCCCGGCCATGAGTTATCTTGCCAGTACTGTGCCACATTGGTGTTTCTATTATTGGCTGGTAAAAATTAACTTGGATATACATCTTTCAGAATCTCCGGACCATGGTTCGGTTTTAGGGGTTATTATGAACTTTCAAACAGTGGTATCTCTACAATTTGTTTGTTCATCAGTGCATCAACTGAAGTTTTTTTTTATTACACAAATTTACAACTGCTGATTGTTCAATTTCAATTGTTCAGCACATATTCTGAGTTGAGCTCCTCGGCAAAGGAAGATAACGCACAGCCTGCTGTTGAGCAATTCTTGGCGCTGCATGCGAGTTTGAAGAATGTTCACCTTGTTGGTGATGCTTTATCCAAGACCATATCAGCTGCTGGTTCAGAATCAGATCATGAAGAAAACCCTTCTGAAGAAGCACTTAAGGCTGTATCAGAAAAACGGAAGCAAGCAACTCTATGGGTCAATGCTGCGTTGGCTACCAATCTGTCATCATTCTCAGTGTATAGCAAAAAAGCAACTTCATCTCCAATTGCCCCTTCAGCTCCCTCGCCAAGCCCAAAGACTATCGCTCTCAATCAACCTATGCTAGTCCTTGATAACTCAACCAAAAGTACTCTTGCAAAACCTCAAGCCAAACCCCGCCCGACAATGAGTTCTAAGATTCAGTCATCAGGATCTCAACGGCGCTTAGCAGATGGGATAGCTTCTAATCAAAA</genome_strand>
        <mrna_strand>CTGAAAGCTTACTAAGATGTCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATATTCTGAGTTGAGCTCCTCGGCAAAGGAAGATAACGCACAGCCTGCTGTTGAGCAATTCTTGGCGCTGCATGCGAGTTTGAAGAATGTTCACCTTGTTGGTGATGCTTTATCCAAGACCATATCAGCTGCTGGTTCAGAATCAGATCATGAAGAAAACCCTTCTGAAGAAGCACTTAAGGCTGTATCAGAAAAACGGAAGCAAGCAACTCTATGGGTCAATGCTGCGTTGGCTACCAATCTGTCATCATTCTCAGTGTATAGCAAAAAAGCAACTTCATCTCCAATTGCCCCTTCAGCTCCCTCGCCAAGCCCAAAGACTATCGCTCTCAATCAACCTATGCTAGTCCTTGATAACTCAACCAAAAGTACTCTTGCAAAACCTCAAGCCAAACCCCGCCCGACAATGAGTTCTAAGATTCAGTCATCAGGATCTCAACGGCGCTTAGCAGATGGGATAGCTTCTAATCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708584" ref_strand="+" ref_description="SGN-E708584 [FA36AF10]">
      <seq>ccccgggctgcaggagccaagcccaaagactatcgctctcaatcaacctatgctagtccttgataactcaaccaaaagtactcttgcaaaacctcaagccaaaccccgcccgacaatgagttctaagattcagtcatcaggatctcaacggcgcttagcagatgggatagcttctaatcaaaagccaaaatctcctcctccagcggattgggtcagaggagacgggctcggagaggctgttgacttacccgagatgttacgagtagcgtcccaagactggttcttaggatttgtagaaaggttcttggatgctgatgttgatgcctcagctttatcagataatggtcaaatagccggcatgttatcccagctgaagagtgtgaacgactggttagatgagatctcctctagcaaggatgatgaaagtccccaaattgcttctgagaccatcgataggataagaaaaaagatctatgaatatcttctcactcatgtggagtctgctgcagcagctcttggtggtggcagtggcggtagctcacaagtgccacctacaatagaaaccaaaacgagaaaatgagttctattgcataatgcatactactagcaactcacctttcatatttgaagcatgctccaatagtccttcaaccgccaagtggttaaaagagctgaaagttttacgatgtgtatagattctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23229" stop="24515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23529" g_stop="24215" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="702" r_length="687" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E708584" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23529" e_stop="24215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAGCCCAAAGACTATCGCTCTCAATCAACCTATGCTAGTCCTTGATAACTCAACCAAAAGTACTCTTGCAAAACCTCAAGCCAAACCCCGCCCGACAATGAGTTCTAAGATTCAGTCATCAGGATCTCAACGGCGCTTAGCAGATGGGATAGCTTCTAATCAAAAGCCAAAATCTCCTCCTCCAGCGGATTGGGTCAGAGGAGACGGTCTTGAAGAGGCTGTTGACTTAGCCGAGATGTTACGAGTAGCGTCCCAAGACTGGTTCTTAGGATTTGTAGAAAGGTTCTTGGATGCTGATGTTGATGCCTCAGCTTTATCAGATAATGGTCAAATAGCCGGCATGTTATCCCAGCTGAAGAGTGTGAACGACTGGTTAGATGAGATCTCCTCTAGCAAGGATGATGAAAGTCCCCAAATTGCTTCTGAGACCATCGATAGGATAAGAAAAAAGATCTATGAATATCTTCTCACTCATGTGGAGTCTGCTGCAGCAGCTCTTGGTGGTGGCAGTGGCGGTAGCTCACAAGTGCCACCTACAATAGAAACCAAAACGAGAAAATGAGTTCTATTGCATAATGCATACTACTAGCAACTCACCTTTCATATTTGAAGCATGCTCCAATAGTCCTTCAACCGCCAAGTGGTTAAAAGAGCTGAAAGTTTTAGGATGTGTATAGATTCTAA</genome_strand>
        <mrna_strand>GCCAAGCCCAAAGACTATCGCTCTCAATCAACCTATGCTAGTCCTTGATAACTCAACCAAAAGTACTCTTGCAAAACCTCAAGCCAAACCCCGCCCGACAATGAGTTCTAAGATTCAGTCATCAGGATCTCAACGGCGCTTAGCAGATGGGATAGCTTCTAATCAAAAGCCAAAATCTCCTCCTCCAGCGGATTGGGTCAGAGGAGACGGGCTCGGAGAGGCTGTTGACTTACCCGAGATGTTACGAGTAGCGTCCCAAGACTGGTTCTTAGGATTTGTAGAAAGGTTCTTGGATGCTGATGTTGATGCCTCAGCTTTATCAGATAATGGTCAAATAGCCGGCATGTTATCCCAGCTGAAGAGTGTGAACGACTGGTTAGATGAGATCTCCTCTAGCAAGGATGATGAAAGTCCCCAAATTGCTTCTGAGACCATCGATAGGATAAGAAAAAAGATCTATGAATATCTTCTCACTCATGTGGAGTCTGCTGCAGCAGCTCTTGGTGGTGGCAGTGGCGGTAGCTCACAAGTGCCACCTACAATAGAAACCAAAACGAGAAAATGAGTTCTATTGCATAATGCATACTACTAGCAACTCACCTTTCATATTTGAAGCATGCTCCAATAGTCCTTCAACCGCCAAGTGGTTAAAAGAGCTGAAAGTTTTACGATGTGTATAGATTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716368" ref_strand="+" ref_description="SGN-E716368 [FB16DD11]">
      <seq>atagattctaaaattggtcgaggtagagtagtttagtatatatattgtgcagacagggagttacatgaagttcaagatttccttttttctttacctggaaactttttctcataaattatgactagctcaaagtcgtgagtatatacttatgtgagttctggagaaaagggaacatgtcctttctccttaccttgaacgagtaacaatgaacttgttactgaaattaaccttatagtttgattgatgacgttatgcatctcagtgttatcatttgaagtaggaagttgtggacttgttggaacttcaaggttttcaagtttctttcacaatcttgctaggaatgacggagtgagctgtccaagcttgggtggacagagttgcctggtacttgtgctagttggaggtagcaatttggcgtgtgacttattagcttgctcgagtttgaagtgtaataattattgtagtaccagtaaaagattagcttcagatcatgtcccatgtacttatttttctaataacaaaaaccatattacaactganaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23905" stop="25068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24205" g_stop="24768" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E716368" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24205" e_stop="24768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATTCTAAAATTGGTCGAGGTAGAGTAGTTTAGTATATATATTGTGCAGACAGGGAGTTACATGAAGTTCAAGATTTCCTTTTTTCTTTACCTGGAAACTTTTTCTCATAAATTATGACTAGCTCAAAGTCGTGAGTATATACTTATGTGAGTTCTGGAGAAAAGGGAACATGTCCTTTCTCCTTACCTTGAACGAGTAACAATGAACTTGTTACTGAAATTAACCTTATAGTTTGATTGATGACGTTATGCATCTCAGTGTTATCATTTGAAGTAGGAAGTTGTGGACTTGTTGGAACTTCAAGGTTTTCAAGTTTCTTTCACAATCTTGCTAGGAATGACGGAGTGAGCTGTCCAAGCTTGGGTGGACAGAGTTGCCTGGTACTTGTGCTAGTTGGAGGTAGCAATTTGGCGTGTGACTTCTTAGCTTGCTCGAGTTTGAAGTGTAATAATTATTGTAGTACCAGTAAAAGATTAGCTTCAGATCATGTCCCATGTACTTATTTTTCTAATAACAAAAACCATATTACAACTGAGACAAGGAGTAGCAGATGACATTAA</genome_strand>
        <mrna_strand>ATAGATTCTAAAATTGGTCGAGGTAGAGTAGTTTAGTATATATATTGTGCAGACAGGGAGTTACATGAAGTTCAAGATTTCCTTTTTTCTTTACCTGGAAACTTTTTCTCATAAATTATGACTAGCTCAAAGTCGTGAGTATATACTTATGTGAGTTCTGGAGAAAAGGGAACATGTCCTTTCTCCTTACCTTGAACGAGTAACAATGAACTTGTTACTGAAATTAACCTTATAGTTTGATTGATGACGTTATGCATCTCAGTGTTATCATTTGAAGTAGGAAGTTGTGGACTTGTTGGAACTTCAAGGTTTTCAAGTTTCTTTCACAATCTTGCTAGGAATGACGGAGTGAGCTGTCCAAGCTTGGGTGGACAGAGTTGCCTGGTACTTGTGCTAGTTGGAGGTAGCAATTTGGCGTGTGACTTATTAGCTTGCTCGAGTTTGAAGTGTAATAATTATTGTAGTACCAGTAAAAGATTAGCTTCAGATCATGTCCCATGTACTTATTTTTCTAATAACAAAAACCATATTACAACTGANAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310479" ref_strand="+" ref_description="SGN-E310479 [cTOA-9-C1]">
      <seq>ctcaatcttatctttactgtatgatcattttaatgtcatctgctactccttgtctcagttgtaatatggtttttgttattagaaaaataagtacatgggacatgatctgaagctaatcttttactggtactacaataattattacacttcaaactcgagcaagctaagaagtcacacgccaaattgctacctccaactagcacaagtaccaggcaactctgtccacccaagcttggacagctcactccgtcattcctagcaagattgtgaaagaaacttgaaaaccttgaagttccaacaagtccacaacttcctacttcaaatgataacactgagatgcataacgtcatcaatcaaactataaggttaatttcagtaacaagttcattgttactcgttcaaggtaaggagaaaggacatgttcccttttctccagaactcacataagtatatactcacgactttgagctagtcataatttatgagaaaaagtttccaggtaaagaaaaaaagaaatcttgaacttcatgtaactccctgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25097" stop="23955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24797" g_stop="24255" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E310479" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24797" e_stop="24255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATCTTATCTTTACTGTATGATCATTTTAATGTCATCTGCTACTCCTTGTCTCAGTTGTAATATGGTTTTTGTTATTAGAAAAATAAGTACATGGGACATGATCTGAAGCTAATCTTTTACTGGTACTACAATAATTATTACACTTCAAACTCGAGCAAGCTAAGAAGTCACACGCCAAATTGCTACCTCCAACTAGCACAAGTACCAGGCAACTCTGTCCACCCAAGCTTGGACAGCTCACTCCGTCATTCCTAGCAAGATTGTGAAAGAAACTTGAAAACCTTGAAGTTCCAACAAGTCCACAACTTCCTACTTCAAATGATAACACTGAGATGCATAACGTCATCAATCAAACTATAAGGTTAATTTCAGTAACAAGTTCATTGTTACTCGTTCAAGGTAAGGAGAAAGGACATGTTCCCTTTTCTCCAGAACTCACATAAGTATATACTCACGACTTTGAGCTAGTCATAATTTATGAGAAAAAGTTTCCAGGTAAAGAAAAAAGGAAATCTTGAACTTCATGTAACTCCCTGTCT</genome_strand>
        <mrna_strand>CTCAATCTTATCTTTACTGTATGATCATTTTAATGTCATCTGCTACTCCTTGTCTCAGTTGTAATATGGTTTTTGTTATTAGAAAAATAAGTACATGGGACATGATCTGAAGCTAATCTTTTACTGGTACTACAATAATTATTACACTTCAAACTCGAGCAAGCTAAGAAGTCACACGCCAAATTGCTACCTCCAACTAGCACAAGTACCAGGCAACTCTGTCCACCCAAGCTTGGACAGCTCACTCCGTCATTCCTAGCAAGATTGTGAAAGAAACTTGAAAACCTTGAAGTTCCAACAAGTCCACAACTTCCTACTTCAAATGATAACACTGAGATGCATAACGTCATCAATCAAACTATAAGGTTAATTTCAGTAACAAGTTCATTGTTACTCGTTCAAGGTAAGGAGAAAGGACATGTTCCCTTTTCTCCAGAACTCACATAAGTATATACTCACGACTTTGAGCTAGTCATAATTTATGAGAAAAAGTTTCCAGGTAAAGAAAAAAAGAAATCTTGAACTTCATGTAACTCCCTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229530" ref_strand="+" ref_description="SGN-E229530 [cLEL-4-P15](-)">
      <seq>ttgaagtgtaataattattggagtaccagtaaaagattagcttcagatcatgtcccatgtacttatttttctaataacaaaaaccatattacaactgagacaaggagtagcagatgacattaaaatgatcatacagtaaagataagattgagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24346" stop="25099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24646" g_stop="24799" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="155" polyA_stop="169"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E229530" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>154</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24646" e_stop="24799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGTGTAATAATTATTGTAGTACCAGTAAAAGATTAGCTTCAGATCATGTCCCATGTACTTATTTTTCTAATAACAAAAACCATATTACAACTGAGACAAGGAGTAGCAGATGACATTAAAATGATCATACAGTAAAGATAAGATTGAGAA</genome_strand>
        <mrna_strand>TTGAAGTGTAATAATTATTGGAGTACCAGTAAAAGATTAGCTTCAGATCATGTCCCATGTACTTATTTTTCTAATAACAAAAACCATATTACAACTGAGACAAGGAGTAGCAGATGACATTAAAATGATCATACAGTAAAGATAAGATTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260837" ref_strand="-" ref_description="SGN-E260837 [cLEG-55-C13]">
      <seq>aaagttgcggaaaattaaggagaaggattcagaccgtggtcgccacatgaagggcttcgataggctgaaagtcagggacccagaggcgctgttagttcaagaggatcttgaaacactttcccaagaggaagaagttgaagatgacaagagtgatggctttgttactgaggttgttcgtaagaagtcctttgacatgccacctttaagtgtcaatgaagcaattgaacagctggaaaatgtcgaccatgacttctatggtttccggaatgaggaaactggtgagattaacatcgtttacagacgaaaagaagggggttatggacttattattccaaaggaagatggtaaaacagagaagttagagcccttggaggttgaaccagagaaagaaccgtcgatagcagaataaatcgatatggtaaaagagttattagttagtcactgagtacatttgcttaggcataatgttcactccttgagagtcacaagaaacagttttatgaattgagaatatattgccaaaaaagcttctgtatgaaatgagttctgtaaagtttgtaactaaaacttgacaaggaaaaatgcagcttttcatttccttctctattgttgttgtaatatattaactactgcatatttcagattacaaaatctttatctaataacaaacctgaaaaaagggtctactaaaaaaaaaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29957" stop="27050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29657" g_stop="29489" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29488" i_stop="27957" i_length="1532">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27956" g_stop="27848" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="278" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27847" i_stop="27764" i_length="84">
            <donor d_prob="0.581" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27763" g_stop="27351" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="691" r_length="413" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="692" polyA_stop="715"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E260837" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260837" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29657" e_stop="29489"/>
          <exon e_start="27956" e_stop="27848"/>
          <exon e_start="27763" e_stop="27351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTGCGGAAAATTAAGGAGAAGGATTCAGACCGTGGTCGCCACATGAAGGGCTTCGATAGGCTGAAAGTCAGGGACCCAGAGGCGCTGTTAGTTCAAGAGGATCTTGAAACACTTTCCCAAGAGGAAGAAGTTGAAGATGACAAGAGTGATGGCTTTGTTACTGAGGTTGTCTCTGAACTTATATGTTTTGCCAAATATTCTTCTTGCACTCAATTTTGTTGGTTACTACAAGTTTGCATGGCCTTTTAGCTTAGACTTGACTGAATTCCTAGCAACAGCGAGGATACATGTTTTTCACTGTGACTAAAGGGCTTTACTGGTGCTGGCAATTGATATTTTGCCCAATTAATATTTTTTAACTGAGTAGAATATCTGAATGAGTTTTGCTAATGTGTATTCCATTTTTGACGTTGGATGCCATACTCCGGTTCTATTATTCTTCCATAATATGTTTAGAGTATTACAGAAGAGAAGTAGTAAGAGACCAGGAACAAGACTATGTGATTATGCGATGATAAATAAGATGGTTATCATCTTTTTGTTTGATGTTTATGGTGGATCAGAGTAGAATTAGAATTGATGGGTGGAACAATATTTGGGTATCGTAATCTAGGATCTTGATAAAATATTAGACTTCATTTCCTGTGTCAGTTTTTAAATTTTATTCCAGTCCTTGAATTAGCAAGTATCTTGAACGGAGATAACTGTTAGCTGTTGTGGAGGTATGGTATGTTTCGCTTTAAAGGGAAAAACTTCGAAATTTTACGTTATAATGGTTCACCTAGAAAGCATTTGAAATACCATTTAGGAACGAAGATCTGGTGACCTTTATAGCAGTATGAACCTAAGTTGCGCGGACTCTTCACTTTCAATGCCGCACCCGTCTCAGGTTCTCCAAAAATTCACTACTTTTGGCAAATCCGACACGCACCCCTTGACATTATTGAAGAGTCCGAGCAACATAGGTATGAACAGGGTTGGCGTATGCCTTAAAACATCCTGATTTCTGATCTTAAGTTATGTGATAGCAGATGCCCCTGCCCATTTTCTCCTGGAACTCCCCTTCTTCATTTGTTGTATTTGCCAAATACTGAGGCATGTACATTAGGCTCATCTTTACAGTTACAGTGTTAATTTAAATTACAGGTGTAATATCCATTCCAGAATAAGGTTGTCTTTTTTTTGTATGGAACACACTTGTCCTTTCTGTTTCTACCATTCCAAATCCCCTCACTGCCTATCAAATGCCTGTGTCTTTATTCAACTCAAACCGAGCAGTCTATGCTGTAGCCAGATATTCATAATCTCTTCTTGATATAAATGCCTCGGTTGTTTCACAGCATGCTTTGTCAATCTCCCCAAGCAACGAAACGTGCTTTGTCACTTTTAAGTGAACAAAATCTTGTCTGTCGGGTGGATGTAGAACTGTAGATCACTTTCGACTCTTCCCTTTTATGCTTTTTACTGCCTGTTCTGCTGAATACTAAATGATGCACCAAGTCATTATTAGACATCACCCTCGAAATCCTAGCTTGAAATGTAATGATCTGATCGTCAAGATTTGCTACATTCGCTAAATGAGTATAAACAACCATTTTAATGGTTTATAATGTCTTAGATTTAGATTTACTGGGTATTTTGCCTAATGTTTCCAGAATTCTGTTCTCAAATTCACTTCCGTTCATATTTTATTTCAGGTTGTTCGTAAGAAGTCCTTTGACATGCCACCTTTAAGTGTCAATGAAGCAATTGAACAGCTGGAAAATGTCGACCATGACTTCTATGGTTTCCGGAATGAGGAAACTGGTACTGAGAAACATCCTTACAACATCATAAACAGTTTTCTAAATGCTTCAAGGTATTTTGTTAATGATTTTATGCTTGTTGCAGGTGAGATTAACATCGTTTACAGACGAAAAGAAGGGGGTTATGGACTTATTATTCCAAAGGAAGATGGTAAAACAGAGAAGTTAGAGCCCTTGGAGGTTGAACCAGAGAAAGAACCGTCGATAGCAGAATAAATCGATATGGTAAAAGAGTTATTAGTTAGTCACTGAGTACATTTGCTTAGGCATAATGTTCACTCCTTGAGAGTCACAAGAAACAGTTTTATGAATTGAGAATATATTGCCAAAAAAGCTTCTGTATGAAATGAGTTCTGTAAAGTTTGTAACTAAAACTTGACAAGGAAAAATGCAGCTTTTCATTTCCTTCTCTATTGTTGTTGTAATATATTAACTACTGCATATTTCAGATTACAAAATCTTTATCTAATAACAAACCTGAAAAAAGGGTCTACTAAC</genome_strand>
        <mrna_strand>AAAGTTGCGGAAAATTAAGGAGAAGGATTCAGACCGTGGTCGCCACATGAAGGGCTTCGATAGGCTGAAAGTCAGGGACCCAGAGGCGCTGTTAGTTCAAGAGGATCTTGAAACACTTTCCCAAGAGGAAGAAGTTGAAGATGACAAGAGTGATGGCTTTGTTACTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCGTAAGAAGTCCTTTGACATGCCACCTTTAAGTGTCAATGAAGCAATTGAACAGCTGGAAAATGTCGACCATGACTTCTATGGTTTCCGGAATGAGGAAACTG....................................................................................GTGAGATTAACATCGTTTACAGACGAAAAGAAGGGGGTTATGGACTTATTATTCCAAAGGAAGATGGTAAAACAGAGAAGTTAGAGCCCTTGGAGGTTGAACCAGAGAAAGAACCGTCGATAGCAGAATAAATCGATATGGTAAAAGAGTTATTAGTTAGTCACTGAGTACATTTGCTTAGGCATAATGTTCACTCCTTGAGAGTCACAAGAAACAGTTTTATGAATTGAGAATATATTGCCAAAAAAGCTTCTGTATGAAATGAGTTCTGTAAAGTTTGTAACTAAAACTTGACAAGGAAAAATGCAGCTTTTCATTTCCTTCTCTATTGTTGTTGTAATATATTAACTACTGCATATTTCAGATTACAAAATCTTTATCTAATAACAAACCTGAAAAAAGGGTCTACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260084" ref_strand="-" ref_description="SGN-E260084 [cLEG-52-P5]">
      <seq>aaagaagggggttatggacttattattccaaaggaagatggtaaaccagagaagttagagcccttggaggttgacccagagaaagacccgtcgatagcagaataaatcgatatggtaaaagagttattagttagtcactgagtacatttgcttaggcataatgttcactccttgagagtcacaagaaacagttttatgaattgagaatatattgccaaaaaagcttctgtatgaaatgagttctgtaaagtttgtaactaaaacttgacaaggaaaaatgcagcttttcatttccttctctattgttgttgtaatatattaactactgcatatttcagattacaaaatctttatctaataacaaacctgaaaaaagggtcttctaaaaaaaaaaaaaaaaaaaaaaaaaactcgagactagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28037" stop="27050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27737" g_stop="27351" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="411"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E260084" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260084" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27737" e_stop="27351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGGGGGTTATGGACTTATTATTCCAAAGGAAGATGGTAAAACAGAGAAGTTAGAGCCCTTGGAGGTTGAACCAGAGAAAGAACCGTCGATAGCAGAATAAATCGATATGGTAAAAGAGTTATTAGTTAGTCACTGAGTACATTTGCTTAGGCATAATGTTCACTCCTTGAGAGTCACAAGAAACAGTTTTATGAATTGAGAATATATTGCCAAAAAAGCTTCTGTATGAAATGAGTTCTGTAAAGTTTGTAACTAAAACTTGACAAGGAAAAATGCAGCTTTTCATTTCCTTCTCTATTGTTGTTGTAATATATTAACTACTGCATATTTCAGATTACAAAATCTTTATCTAATAACAAACCTGAAAAAAGGGTCTACTAAC</genome_strand>
        <mrna_strand>AAAGAAGGGGGTTATGGACTTATTATTCCAAAGGAAGATGGTAAACCAGAGAAGTTAGAGCCCTTGGAGGTTGACCCAGAGAAAGACCCGTCGATAGCAGAATAAATCGATATGGTAAAAGAGTTATTAGTTAGTCACTGAGTACATTTGCTTAGGCATAATGTTCACTCCTTGAGAGTCACAAGAAACAGTTTTATGAATTGAGAATATATTGCCAAAAAAGCTTCTGTATGAAATGAGTTCTGTAAAGTTTGTAACTAAAACTTGACAAGGAAAAATGCAGCTTTTCATTTCCTTCTCTATTGTTGTTGTAATATATTAACTACTGCATATTTCAGATTACAAAATCTTTATCTAATAACAAACCTGAAAAAAGGGTCTTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745931" ref_strand="+" ref_description="SGN-E745931 [GI|47105471]">
      <seq>gactgtatcgagcaacaaagcaactgtgattctcctacaaagttccaatctttatcaagaacccacaaaattcatcaacccatttgaagtgttttactccttaaatcgataaattgactcaaaaatctccagttactactgttcctgcaatatacaacaatggcgactctttccctttccccttccgtgggaacaacttttcactctctccatagctacccaaatggttcctcatcctattcttcttcttgtcccgctaccgcttctccagctttgtcactgacattgtcatctaccaattcacgatttttaaattcagctttcaagatgaatgaaattaatgttcctgtcaggaatagggtgacaaaatcctttggggtccggatgtcttgggatggtccactttcttctgttaaactcattcttcaagggaaaaatcttgagttaacacctgctgtaaaggactatgtggaagagaagttgggtaaggcagttcaaaagcacagccatctagccagggaagtggatgttaggctgtctgttcgaggtggagagcttggaaaaggcccaaaaattcgaagatgtgaagttactctatttacgaaaaagcatggagtgattcgtgcagaggaagacggtgagtcaatttatggaagtatagatatggtatcatcaattatacagagaaagttgcggaaaattaaggagaaggattcagaccgtggtcgccacatgaagggcttcgataggctgaaagtcagggacccagaggcgctgttagttcaagaggatcttgaaacactttcccaagaggaagaagttgaagatgacaagagtgatggctttgttactgaggttgttcgtaagaagtcctttgacatgccacctttaagtgtcaatgaagcaattgaacagctggaaaatgtcgaccatgacttctatggtttccggaatgaggtaactggtgagattaacatcgtttacagacgaaaagaagggggttatggacttattattccaaaggaagatggtaaaacagagaagttagagcccttggaggttgaaccagagaaagaaccgtcgatagcagaataaatcgatatggtaaaagagttattagttagtcactgagtacatttgcttaggcataatgttcactccttgagagtcacaagaaacagttttatgaattgagaatatattgccaaaaaagcttctgtatgaaatgagttctgtaaagtttgtaactaaaacttgacaaggaaaaatgcagcttttcatttccttctctattgttgttgtaatatattaactactgcatatttcagattactaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31454" stop="27091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31155" g_stop="30712" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30711" i_stop="29992" i_length="720">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29991" g_stop="29848" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="588" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29847" i_stop="29756" i_length="92">
            <donor d_prob="0.761" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29755" g_stop="29489" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="855" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29488" i_stop="27957" i_length="1532">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27956" g_stop="27848" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="856" r_stop="964" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27847" i_stop="27764" i_length="84">
            <donor d_prob="0.581" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27763" g_stop="27392" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="965" r_stop="1336" r_length="372" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1337" polyA_stop="1350"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E745931" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1336</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31155" e_stop="30712"/>
          <exon e_start="29991" e_stop="29848"/>
          <exon e_start="29755" e_stop="29489"/>
          <exon e_start="27956" e_stop="27848"/>
          <exon e_start="27763" e_stop="27392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGTACCGAGCAACAAAGCAACTGTGATTCTCCTACAAAGTTCCAATCTTTATCAAGAACCCACAAAATTCATCAACCCATTTGAAGTGTTTTACTCCTTAAATCGATAAATTGACTCAAAAATCTCCAGTTACTACTGTTCCTGCAATATACAACAATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAGGTCACACTCCTTAGGCCTTACAATATTATTATTTCCCTGCATTTTTTGCTTATATCTGCTAAAGTGTACTTCATAGGAACTTGGGTTTTCTGAAAAATAGTTAATTGATTTTGAATATACTCCTCTATCAAATGACTGCTCAGGTGCTATAAGGTCTATCAGAAACAACCTGTGTGTCCTGAAAAAGTAGGACTAAGATCTGCGTACTTAATAGTACCTTTTAGCATCTTATGTCTCTGTATCAAAATCTAATTTTGATGGGATCTACCATTTCAGTGAAAAATAGGGCACAATGAAAGAAAAATCTGTTAATGTGATAGCAATTAGTTGGATTTATAGTTTAGTCATGTTCTGTGTTTCTATTGGTTCTCTAATTTGTCAGAGAAGAAAATATAGAGAGCTTCTAGTATCTTTATTACTCATTGAGTCATTTCTAATTTTGTTTTGCTTAATGTTAGTTTGAGATGATCTTAAATGAAGGGACATGGTCAATGAGGATTCATATAGCTGAGCAAACTTATTGCGATTGTGTTGTAGCTGTTGTAGAAAAAATACGTATGAATTGACATCAAAAAAATTAGCTTGTTGGACTTTAACCATTTCAATAGCTAGTTCACAATGAAACAACAAGTCTTAGCAGATTGATTTCTCAAATGGAATTTATTTTTTTTGCTTTTAAAGTGTTCATGGTGGTGACTTATTGTCGTGGTGCAACTACAGTTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGAAAAGGCCCAAAAATTCGAAGATGTGAAGTGTGCACCAAAACTTGAAAATTCATTACATTAGGTTTTTGTTATTATTTTTATCATTCAAAATTTACTTGACTGACATTCCTGAACTATAGGTTACTCTATTTACGAAAAAGCATGGAGTGATTCGTGCAGAGGAAGACGGTGAGTCAATTTATGGAAGTATAGATATGGTATCATCAATTATACAGAGAAAGTTGCGGAAAATTAAGGAGAAGGATTCAGACCGTGGTCGCCACATGAAGGGCTTCGATAGGCTGAAAGTCAGGGACCCAGAGGCGCTGTTAGTTCAAGAGGATCTTGAAACACTTTCCCAAGAGGAAGAAGTTGAAGATGACAAGAGTGATGGCTTTGTTACTGAGGTTGTCTCTGAACTTATATGTTTTGCCAAATATTCTTCTTGCACTCAATTTTGTTGGTTACTACAAGTTTGCATGGCCTTTTAGCTTAGACTTGACTGAATTCCTAGCAACAGCGAGGATACATGTTTTTCACTGTGACTAAAGGGCTTTACTGGTGCTGGCAATTGATATTTTGCCCAATTAATATTTTTTAACTGAGTAGAATATCTGAATGAGTTTTGCTAATGTGTATTCCATTTTTGACGTTGGATGCCATACTCCGGTTCTATTATTCTTCCATAATATGTTTAGAGTATTACAGAAGAGAAGTAGTAAGAGACCAGGAACAAGACTATGTGATTATGCGATGATAAATAAGATGGTTATCATCTTTTTGTTTGATGTTTATGGTGGATCAGAGTAGAATTAGAATTGATGGGTGGAACAATATTTGGGTATCGTAATCTAGGATCTTGATAAAATATTAGACTTCATTTCCTGTGTCAGTTTTTAAATTTTATTCCAGTCCTTGAATTAGCAAGTATCTTGAACGGAGATAACTGTTAGCTGTTGTGGAGGTATGGTATGTTTCGCTTTAAAGGGAAAAACTTCGAAATTTTACGTTATAATGGTTCACCTAGAAAGCATTTGAAATACCATTTAGGAACGAAGATCTGGTGACCTTTATAGCAGTATGAACCTAAGTTGCGCGGACTCTTCACTTTCAATGCCGCACCCGTCTCAGGTTCTCCAAAAATTCACTACTTTTGGCAAATCCGACACGCACCCCTTGACATTATTGAAGAGTCCGAGCAACATAGGTATGAACAGGGTTGGCGTATGCCTTAAAACATCCTGATTTCTGATCTTAAGTTATGTGATAGCAGATGCCCCTGCCCATTTTCTCCTGGAACTCCCCTTCTTCATTTGTTGTATTTGCCAAATACTGAGGCATGTACATTAGGCTCATCTTTACAGTTACAGTGTTAATTTAAATTACAGGTGTAATATCCATTCCAGAATAAGGTTGTCTTTTTTTTGTATGGAACACACTTGTCCTTTCTGTTTCTACCATTCCAAATCCCCTCACTGCCTATCAAATGCCTGTGTCTTTATTCAACTCAAACCGAGCAGTCTATGCTGTAGCCAGATATTCATAATCTCTTCTTGATATAAATGCCTCGGTTGTTTCACAGCATGCTTTGTCAATCTCCCCAAGCAACGAAACGTGCTTTGTCACTTTTAAGTGAACAAAATCTTGTCTGTCGGGTGGATGTAGAACTGTAGATCACTTTCGACTCTTCCCTTTTATGCTTTTTACTGCCTGTTCTGCTGAATACTAAATGATGCACCAAGTCATTATTAGACATCACCCTCGAAATCCTAGCTTGAAATGTAATGATCTGATCGTCAAGATTTGCTACATTCGCTAAATGAGTATAAACAACCATTTTAATGGTTTATAATGTCTTAGATTTAGATTTACTGGGTATTTTGCCTAATGTTTCCAGAATTCTGTTCTCAAATTCACTTCCGTTCATATTTTATTTCAGGTTGTTCGTAAGAAGTCCTTTGACATGCCACCTTTAAGTGTCAATGAAGCAATTGAACAGCTGGAAAATGTCGACCATGACTTCTATGGTTTCCGGAATGAGGAAACTGGTACTGAGAAACATCCTTACAACATCATAAACAGTTTTCTAAATGCTTCAAGGTATTTTGTTAATGATTTTATGCTTGTTGCAGGTGAGATTAACATCGTTTACAGACGAAAAGAAGGGGGTTATGGACTTATTATTCCAAAGGAAGATGGTAAAACAGAGAAGTTAGAGCCCTTGGAGGTTGAACCAGAGAAAGAACCGTCGATAGCAGAATAAATCGATATGGTAAAAGAGTTATTAGTTAGTCACTGAGTACATTTGCTTAGGCATAATGTTCACTCCTTGAGAGTCACAAGAAACAGTTTTATGAATTGAGAATATATTGCCAAAAAAGCTTCTGTATGAAATGAGTTCTGTAAAGTTTGTAACTAAAACTTGACAAGGAAAAATGCAGCTTTTCATTTCCTTCTCTATTGTTGTTGTAATATATTAACTACTGCATATTTCAGATTACAAA</genome_strand>
        <mrna_strand>GACTGTATCGAGCAACAAAGCAACTGTGATTCTCCTACAAAGTTCCAATCTTTATCAAGAACCCACAAAATTCATCAACCCATTTGAAGTGTTTTACTCCTTAAATCGATAAATTGACTCAAAAATCTCCAGTTACTACTGTTCCTGCAATATACAACAATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACCGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGAAAAGGCCCAAAAATTCGAAGATGTGAA............................................................................................GTTACTCTATTTACGAAAAAGCATGGAGTGATTCGTGCAGAGGAAGACGGTGAGTCAATTTATGGAAGTATAGATATGGTATCATCAATTATACAGAGAAAGTTGCGGAAAATTAAGGAGAAGGATTCAGACCGTGGTCGCCACATGAAGGGCTTCGATAGGCTGAAAGTCAGGGACCCAGAGGCGCTGTTAGTTCAAGAGGATCTTGAAACACTTTCCCAAGAGGAAGAAGTTGAAGATGACAAGAGTGATGGCTTTGTTACTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCGTAAGAAGTCCTTTGACATGCCACCTTTAAGTGTCAATGAAGCAATTGAACAGCTGGAAAATGTCGACCATGACTTCTATGGTTTCCGGAATGAGGTAACTG....................................................................................GTGAGATTAACATCGTTTACAGACGAAAAGAAGGGGGTTATGGACTTATTATTCCAAAGGAAGATGGTAAAACAGAGAAGTTAGAGCCCTTGGAGGTTGAACCAGAGAAAGAACCGTCGATAGCAGAATAAATCGATATGGTAAAAGAGTTATTAGTTAGTCACTGAGTACATTTGCTTAGGCATAATGTTCACTCCTTGAGAGTCACAAGAAACAGTTTTATGAATTGAGAATATATTGCCAAAAAAGCTTCTGTATGAAATGAGTTCTGTAAAGTTTGTAACTAAAACTTGACAAGGAAAAATGCAGCTTTTCATTTCCTTCTCTATTGTTGTTGTAATATATTAACTACTGCATATTTCAGATTACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297844" ref_strand="+" ref_description="SGN-E297844 [cLET-38-H4]">
      <seq>tagttcaagaggatcttgaaacactttcccaagaggaagaagttgaagatgacaagagtgatggctttgttactgaggttgttcgtaagaagtcctttgacatgccacctttaagtgtcaatgaagcaattgaacagctggaaaatgtcgaccatgacttctatggtttccggaatgaggaaactggtgagattaacatcgtttacagacgaaaagaagggggttatggacttattattccaaaggaagatggtaaaacagagaagttagagcccttggaggttgaaccagagaaagaaccgtcgatagcagaataaatcgatatggtaaaagagttattagttagtcactgagtacatttgcttaggcataatgttcactccttgagagtcacaagaaacagttttatgaattgagaatatattgccaaaaaagcttctgtatgaaatgagttctgtaaagtttgtaactaaaacttgacaaggaaaaatgcagcttttcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29865" stop="27145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29565" g_stop="29489" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29488" i_stop="27957" i_length="1532">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27956" g_stop="27848" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="186" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27847" i_stop="27764" i_length="84">
            <donor d_prob="0.581" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27763" g_stop="27445" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="505" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E297844" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29565" e_stop="29489"/>
          <exon e_start="27956" e_stop="27848"/>
          <exon e_start="27763" e_stop="27445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTCAAGAGGATCTTGAAACACTTTCCCAAGAGGAAGAAGTTGAAGATGACAAGAGTGATGGCTTTGTTACTGAGGTTGTCTCTGAACTTATATGTTTTGCCAAATATTCTTCTTGCACTCAATTTTGTTGGTTACTACAAGTTTGCATGGCCTTTTAGCTTAGACTTGACTGAATTCCTAGCAACAGCGAGGATACATGTTTTTCACTGTGACTAAAGGGCTTTACTGGTGCTGGCAATTGATATTTTGCCCAATTAATATTTTTTAACTGAGTAGAATATCTGAATGAGTTTTGCTAATGTGTATTCCATTTTTGACGTTGGATGCCATACTCCGGTTCTATTATTCTTCCATAATATGTTTAGAGTATTACAGAAGAGAAGTAGTAAGAGACCAGGAACAAGACTATGTGATTATGCGATGATAAATAAGATGGTTATCATCTTTTTGTTTGATGTTTATGGTGGATCAGAGTAGAATTAGAATTGATGGGTGGAACAATATTTGGGTATCGTAATCTAGGATCTTGATAAAATATTAGACTTCATTTCCTGTGTCAGTTTTTAAATTTTATTCCAGTCCTTGAATTAGCAAGTATCTTGAACGGAGATAACTGTTAGCTGTTGTGGAGGTATGGTATGTTTCGCTTTAAAGGGAAAAACTTCGAAATTTTACGTTATAATGGTTCACCTAGAAAGCATTTGAAATACCATTTAGGAACGAAGATCTGGTGACCTTTATAGCAGTATGAACCTAAGTTGCGCGGACTCTTCACTTTCAATGCCGCACCCGTCTCAGGTTCTCCAAAAATTCACTACTTTTGGCAAATCCGACACGCACCCCTTGACATTATTGAAGAGTCCGAGCAACATAGGTATGAACAGGGTTGGCGTATGCCTTAAAACATCCTGATTTCTGATCTTAAGTTATGTGATAGCAGATGCCCCTGCCCATTTTCTCCTGGAACTCCCCTTCTTCATTTGTTGTATTTGCCAAATACTGAGGCATGTACATTAGGCTCATCTTTACAGTTACAGTGTTAATTTAAATTACAGGTGTAATATCCATTCCAGAATAAGGTTGTCTTTTTTTTGTATGGAACACACTTGTCCTTTCTGTTTCTACCATTCCAAATCCCCTCACTGCCTATCAAATGCCTGTGTCTTTATTCAACTCAAACCGAGCAGTCTATGCTGTAGCCAGATATTCATAATCTCTTCTTGATATAAATGCCTCGGTTGTTTCACAGCATGCTTTGTCAATCTCCCCAAGCAACGAAACGTGCTTTGTCACTTTTAAGTGAACAAAATCTTGTCTGTCGGGTGGATGTAGAACTGTAGATCACTTTCGACTCTTCCCTTTTATGCTTTTTACTGCCTGTTCTGCTGAATACTAAATGATGCACCAAGTCATTATTAGACATCACCCTCGAAATCCTAGCTTGAAATGTAATGATCTGATCGTCAAGATTTGCTACATTCGCTAAATGAGTATAAACAACCATTTTAATGGTTTATAATGTCTTAGATTTAGATTTACTGGGTATTTTGCCTAATGTTTCCAGAATTCTGTTCTCAAATTCACTTCCGTTCATATTTTATTTCAGGTTGTTCGTAAGAAGTCCTTTGACATGCCACCTTTAAGTGTCAATGAAGCAATTGAACAGCTGGAAAATGTCGACCATGACTTCTATGGTTTCCGGAATGAGGAAACTGGTACTGAGAAACATCCTTACAACATCATAAACAGTTTTCTAAATGCTTCAAGGTATTTTGTTAATGATTTTATGCTTGTTGCAGGTGAGATTAACATCGTTTACAGACGAAAAGAAGGGGGTTATGGACTTATTATTCCAAAGGAAGATGGTAAAACAGAGAAGTTAGAGCCCTTGGAGGTTGAACCAGAGAAAGAACCGTCGATAGCAGAATAAATCGATATGGTAAAAGAGTTATTAGTTAGTCACTGAGTACATTTGCTTAGGCATAATGTTCACTCCTTGAGAGTCACAAGAAACAGTTTTATGAATTGAGAATATATTGCCAAAAAAGCTTCTGTATGAAATGAGTTCTGTAAAGTTTGTAACTAAAACTTGACAAGGAAAAATGCAGCTTTTCATTT</genome_strand>
        <mrna_strand>TAGTTCAAGAGGATCTTGAAACACTTTCCCAAGAGGAAGAAGTTGAAGATGACAAGAGTGATGGCTTTGTTACTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCGTAAGAAGTCCTTTGACATGCCACCTTTAAGTGTCAATGAAGCAATTGAACAGCTGGAAAATGTCGACCATGACTTCTATGGTTTCCGGAATGAGGAAACTG....................................................................................GTGAGATTAACATCGTTTACAGACGAAAAGAAGGGGGTTATGGACTTATTATTCCAAAGGAAGATGGTAAAACAGAGAAGTTAGAGCCCTTGGAGGTTGAACCAGAGAAAGAACCGTCGATAGCAGAATAAATCGATATGGTAAAAGAGTTATTAGTTAGTCACTGAGTACATTTGCTTAGGCATAATGTTCACTCCTTGAGAGTCACAAGAAACAGTTTTATGAATTGAGAATATATTGCCAAAAAAGCTTCTGTATGAAATGAGTTCTGTAAAGTTTGTAACTAAAACTTGACAAGGAAAAATGCAGCTTTTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370593" ref_strand="+" ref_description="SGN-E370593 [TUS-27-M12](-)">
      <seq>ccaaaaattcgaagatgtgaagttactctatttacgaaaaagcatggagtgattcgtgcagaggaagacggtgagtcaatttatggaagtatagatatggtatcatcaattatacagagaaagttgcggaaaattaaggagaaggattcagaccgtggtcgccacatgaagggcttcgataggctgaaagtcagggacccagaggcgctgttagttcaagaggatcttgaaacactttcccaagaggaagaagttgaagatgacaagagtgatggctttgttactgaggttgttcgtaagaagtcctttgacatgccacctttaagtgtcaatgaagcaattgaacagctggaaaatgtcgaccatgacttctatggtttccggaatgaggaaactggtgagattaacatcgtttacagacgaaaagaagggggttatggacttattattccaaaggaagatggtaaaacagagaagttagagcccttggaggttgaaccagagaaagaaccgtcgatagcagaataaatcgatatggtaaaagagttattagttagtcactgagtacatttgcttaggcataatgttcactccttgagagtcacaagaaacagttttatgaattgagaatatattgccaaaaaagcttctgtatgaaatgagttctgtaaagtttgtaactaaaacttgacaaggaaaaatgcagcttttcatttccttctctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30072" stop="27136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29868" g_stop="29848" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29847" i_stop="29756" i_length="92">
            <donor d_prob="0.761" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29755" g_stop="29489" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="288" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29488" i_stop="27957" i_length="1532">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27956" g_stop="27848" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="397" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27847" i_stop="27764" i_length="84">
            <donor d_prob="0.581" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27763" g_stop="27449" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="712" r_length="315" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="725" polyA_stop="736"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E370593" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29868" e_stop="29848"/>
          <exon e_start="29755" e_stop="29489"/>
          <exon e_start="27956" e_stop="27848"/>
          <exon e_start="27763" e_stop="27449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAATTCGAAGATGTGAAGTGTGCACCAAAACTTGAAAATTCATTACATTAGGTTTTTGTTATTATTTTTATCATTCAAAATTTACTTGACTGACATTCCTGAACTATAGGTTACTCTATTTACGAAAAAGCATGGAGTGATTCGTGCAGAGGAAGACGGTGAGTCAATTTATGGAAGTATAGATATGGTATCATCAATTATACAGAGAAAGTTGCGGAAAATTAAGGAGAAGGATTCAGACCGTGGTCGCCACATGAAGGGCTTCGATAGGCTGAAAGTCAGGGACCCAGAGGCGCTGTTAGTTCAAGAGGATCTTGAAACACTTTCCCAAGAGGAAGAAGTTGAAGATGACAAGAGTGATGGCTTTGTTACTGAGGTTGTCTCTGAACTTATATGTTTTGCCAAATATTCTTCTTGCACTCAATTTTGTTGGTTACTACAAGTTTGCATGGCCTTTTAGCTTAGACTTGACTGAATTCCTAGCAACAGCGAGGATACATGTTTTTCACTGTGACTAAAGGGCTTTACTGGTGCTGGCAATTGATATTTTGCCCAATTAATATTTTTTAACTGAGTAGAATATCTGAATGAGTTTTGCTAATGTGTATTCCATTTTTGACGTTGGATGCCATACTCCGGTTCTATTATTCTTCCATAATATGTTTAGAGTATTACAGAAGAGAAGTAGTAAGAGACCAGGAACAAGACTATGTGATTATGCGATGATAAATAAGATGGTTATCATCTTTTTGTTTGATGTTTATGGTGGATCAGAGTAGAATTAGAATTGATGGGTGGAACAATATTTGGGTATCGTAATCTAGGATCTTGATAAAATATTAGACTTCATTTCCTGTGTCAGTTTTTAAATTTTATTCCAGTCCTTGAATTAGCAAGTATCTTGAACGGAGATAACTGTTAGCTGTTGTGGAGGTATGGTATGTTTCGCTTTAAAGGGAAAAACTTCGAAATTTTACGTTATAATGGTTCACCTAGAAAGCATTTGAAATACCATTTAGGAACGAAGATCTGGTGACCTTTATAGCAGTATGAACCTAAGTTGCGCGGACTCTTCACTTTCAATGCCGCACCCGTCTCAGGTTCTCCAAAAATTCACTACTTTTGGCAAATCCGACACGCACCCCTTGACATTATTGAAGAGTCCGAGCAACATAGGTATGAACAGGGTTGGCGTATGCCTTAAAACATCCTGATTTCTGATCTTAAGTTATGTGATAGCAGATGCCCCTGCCCATTTTCTCCTGGAACTCCCCTTCTTCATTTGTTGTATTTGCCAAATACTGAGGCATGTACATTAGGCTCATCTTTACAGTTACAGTGTTAATTTAAATTACAGGTGTAATATCCATTCCAGAATAAGGTTGTCTTTTTTTTGTATGGAACACACTTGTCCTTTCTGTTTCTACCATTCCAAATCCCCTCACTGCCTATCAAATGCCTGTGTCTTTATTCAACTCAAACCGAGCAGTCTATGCTGTAGCCAGATATTCATAATCTCTTCTTGATATAAATGCCTCGGTTGTTTCACAGCATGCTTTGTCAATCTCCCCAAGCAACGAAACGTGCTTTGTCACTTTTAAGTGAACAAAATCTTGTCTGTCGGGTGGATGTAGAACTGTAGATCACTTTCGACTCTTCCCTTTTATGCTTTTTACTGCCTGTTCTGCTGAATACTAAATGATGCACCAAGTCATTATTAGACATCACCCTCGAAATCCTAGCTTGAAATGTAATGATCTGATCGTCAAGATTTGCTACATTCGCTAAATGAGTATAAACAACCATTTTAATGGTTTATAATGTCTTAGATTTAGATTTACTGGGTATTTTGCCTAATGTTTCCAGAATTCTGTTCTCAAATTCACTTCCGTTCATATTTTATTTCAGGTTGTTCGTAAGAAGTCCTTTGACATGCCACCTTTAAGTGTCAATGAAGCAATTGAACAGCTGGAAAATGTCGACCATGACTTCTATGGTTTCCGGAATGAGGAAACTGGTACTGAGAAACATCCTTACAACATCATAAACAGTTTTCTAAATGCTTCAAGGTATTTTGTTAATGATTTTATGCTTGTTGCAGGTGAGATTAACATCGTTTACAGACGAAAAGAAGGGGGTTATGGACTTATTATTCCAAAGGAAGATGGTAAAACAGAGAAGTTAGAGCCCTTGGAGGTTGAACCAGAGAAAGAACCGTCGATAGCAGAATAAATCGATATGGTAAAAGAGTTATTAGTTAGTCACTGAGTACATTTGCTTAGGCATAATGTTCACTCCTTGAGAGTCACAAGAAACAGTTTTATGAATTGAGAATATATTGCCAAAAAAGCTTCTGTATGAAATGAGTTCTGTAAAGTTTGTAACTAAAACTTGACAAGGAAAAATGCAGCTTTTC</genome_strand>
        <mrna_strand>CCAAAAATTCGAAGATGTGAA............................................................................................GTTACTCTATTTACGAAAAAGCATGGAGTGATTCGTGCAGAGGAAGACGGTGAGTCAATTTATGGAAGTATAGATATGGTATCATCAATTATACAGAGAAAGTTGCGGAAAATTAAGGAGAAGGATTCAGACCGTGGTCGCCACATGAAGGGCTTCGATAGGCTGAAAGTCAGGGACCCAGAGGCGCTGTTAGTTCAAGAGGATCTTGAAACACTTTCCCAAGAGGAAGAAGTTGAAGATGACAAGAGTGATGGCTTTGTTACTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCGTAAGAAGTCCTTTGACATGCCACCTTTAAGTGTCAATGAAGCAATTGAACAGCTGGAAAATGTCGACCATGACTTCTATGGTTTCCGGAATGAGGAAACTG....................................................................................GTGAGATTAACATCGTTTACAGACGAAAAGAAGGGGGTTATGGACTTATTATTCCAAAGGAAGATGGTAAAACAGAGAAGTTAGAGCCCTTGGAGGTTGAACCAGAGAAAGAACCGTCGATAGCAGAATAAATCGATATGGTAAAAGAGTTATTAGTTAGTCACTGAGTACATTTGCTTAGGCATAATGTTCACTCCTTGAGAGTCACAAGAAACAGTTTTATGAATTGAGAATATATTGCCAAAAAAGCTTCTGTATGAAATGAGTTCTGTAAAGTTTGTAACTAAAACTTGACAAGGAAAAATGCAGCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284389" ref_strand="-" ref_description="SGN-E284389 [cLER-16-C12]">
      <seq>aagatgacaagagtgatggctttgttactgaggttgttcgtaagaagtcctttgacatgccacctttaagtgtcaatgaagcaattgaacagctggaaaatgtcgaccatgacttctatggtttccggaatgaggaaactggtgagattaacatcgtttacagacgaaaagaagggggttatggacttattattccaaaggaagatggtaaaacagagaagttagagcccttggaggttgaaccagagaaagaaccgtcgatagcagaataaatcgatatggtaaaagagttattagttagtcactgagtacatttgcttaggcataatgttcactccttgagagtcacaagaaacagttttatgaattgagaatatattgccaaaaaagcttctgtatgaaatgagttctgtaaagtttgtaactaaaacttgacaaggaaaaatgcagcttttcatttccttctccaaaaaaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29820" stop="27136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29520" g_stop="29489" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29488" i_stop="27957" i_length="1532">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27956" g_stop="27848" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="141" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27847" i_stop="27764" i_length="84">
            <donor d_prob="0.581" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27763" g_stop="27449" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="456" r_length="315" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="469" polyA_stop="495"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E284389" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284389" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29520" e_stop="29489"/>
          <exon e_start="27956" e_stop="27848"/>
          <exon e_start="27763" e_stop="27449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGACAAGAGTGATGGCTTTGTTACTGAGGTTGTCTCTGAACTTATATGTTTTGCCAAATATTCTTCTTGCACTCAATTTTGTTGGTTACTACAAGTTTGCATGGCCTTTTAGCTTAGACTTGACTGAATTCCTAGCAACAGCGAGGATACATGTTTTTCACTGTGACTAAAGGGCTTTACTGGTGCTGGCAATTGATATTTTGCCCAATTAATATTTTTTAACTGAGTAGAATATCTGAATGAGTTTTGCTAATGTGTATTCCATTTTTGACGTTGGATGCCATACTCCGGTTCTATTATTCTTCCATAATATGTTTAGAGTATTACAGAAGAGAAGTAGTAAGAGACCAGGAACAAGACTATGTGATTATGCGATGATAAATAAGATGGTTATCATCTTTTTGTTTGATGTTTATGGTGGATCAGAGTAGAATTAGAATTGATGGGTGGAACAATATTTGGGTATCGTAATCTAGGATCTTGATAAAATATTAGACTTCATTTCCTGTGTCAGTTTTTAAATTTTATTCCAGTCCTTGAATTAGCAAGTATCTTGAACGGAGATAACTGTTAGCTGTTGTGGAGGTATGGTATGTTTCGCTTTAAAGGGAAAAACTTCGAAATTTTACGTTATAATGGTTCACCTAGAAAGCATTTGAAATACCATTTAGGAACGAAGATCTGGTGACCTTTATAGCAGTATGAACCTAAGTTGCGCGGACTCTTCACTTTCAATGCCGCACCCGTCTCAGGTTCTCCAAAAATTCACTACTTTTGGCAAATCCGACACGCACCCCTTGACATTATTGAAGAGTCCGAGCAACATAGGTATGAACAGGGTTGGCGTATGCCTTAAAACATCCTGATTTCTGATCTTAAGTTATGTGATAGCAGATGCCCCTGCCCATTTTCTCCTGGAACTCCCCTTCTTCATTTGTTGTATTTGCCAAATACTGAGGCATGTACATTAGGCTCATCTTTACAGTTACAGTGTTAATTTAAATTACAGGTGTAATATCCATTCCAGAATAAGGTTGTCTTTTTTTTGTATGGAACACACTTGTCCTTTCTGTTTCTACCATTCCAAATCCCCTCACTGCCTATCAAATGCCTGTGTCTTTATTCAACTCAAACCGAGCAGTCTATGCTGTAGCCAGATATTCATAATCTCTTCTTGATATAAATGCCTCGGTTGTTTCACAGCATGCTTTGTCAATCTCCCCAAGCAACGAAACGTGCTTTGTCACTTTTAAGTGAACAAAATCTTGTCTGTCGGGTGGATGTAGAACTGTAGATCACTTTCGACTCTTCCCTTTTATGCTTTTTACTGCCTGTTCTGCTGAATACTAAATGATGCACCAAGTCATTATTAGACATCACCCTCGAAATCCTAGCTTGAAATGTAATGATCTGATCGTCAAGATTTGCTACATTCGCTAAATGAGTATAAACAACCATTTTAATGGTTTATAATGTCTTAGATTTAGATTTACTGGGTATTTTGCCTAATGTTTCCAGAATTCTGTTCTCAAATTCACTTCCGTTCATATTTTATTTCAGGTTGTTCGTAAGAAGTCCTTTGACATGCCACCTTTAAGTGTCAATGAAGCAATTGAACAGCTGGAAAATGTCGACCATGACTTCTATGGTTTCCGGAATGAGGAAACTGGTACTGAGAAACATCCTTACAACATCATAAACAGTTTTCTAAATGCTTCAAGGTATTTTGTTAATGATTTTATGCTTGTTGCAGGTGAGATTAACATCGTTTACAGACGAAAAGAAGGGGGTTATGGACTTATTATTCCAAAGGAAGATGGTAAAACAGAGAAGTTAGAGCCCTTGGAGGTTGAACCAGAGAAAGAACCGTCGATAGCAGAATAAATCGATATGGTAAAAGAGTTATTAGTTAGTCACTGAGTACATTTGCTTAGGCATAATGTTCACTCCTTGAGAGTCACAAGAAACAGTTTTATGAATTGAGAATATATTGCCAAAAAAGCTTCTGTATGAAATGAGTTCTGTAAAGTTTGTAACTAAAACTTGACAAGGAAAAATGCAGCTTTTC</genome_strand>
        <mrna_strand>AAGATGACAAGAGTGATGGCTTTGTTACTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCGTAAGAAGTCCTTTGACATGCCACCTTTAAGTGTCAATGAAGCAATTGAACAGCTGGAAAATGTCGACCATGACTTCTATGGTTTCCGGAATGAGGAAACTG....................................................................................GTGAGATTAACATCGTTTACAGACGAAAAGAAGGGGGTTATGGACTTATTATTCCAAAGGAAGATGGTAAAACAGAGAAGTTAGAGCCCTTGGAGGTTGAACCAGAGAAAGAACCGTCGATAGCAGAATAAATCGATATGGTAAAAGAGTTATTAGTTAGTCACTGAGTACATTTGCTTAGGCATAATGTTCACTCCTTGAGAGTCACAAGAAACAGTTTTATGAATTGAGAATATATTGCCAAAAAAGCTTCTGTATGAAATGAGTTCTGTAAAGTTTGTAACTAAAACTTGACAAGGAAAAATGCAGCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281195" ref_strand="-" ref_description="SGN-E281195 [cLEL-1-A11]">
      <seq>cgtcgatatcagaataaatcgatatggtaacaaagttattagttagtcactcagtacatttgcttaggcataatgttcactccttgagagtcacaagaaacagttttatgaattgagaatatattgccaaaaaagcttctgtatgaaatgagttctgtaaagtttatgactaaaacttgacaaggaaaaatccagcttttcatttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27949" stop="27144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27649" g_stop="27449" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="207" polyA_stop="216"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E281195" ref_strand="-">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>201</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281195" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27649" e_stop="27449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCGATAGCAGAATAAATCGATATGGTAAAAGAGTTATTAGTTAGTCACTGAGTACATTTGCTTAGGCATAATGTTCACTCCTTGAGAGTCACAAGAAACAGTTTTATGAATTGAGAATATATTGCCAAAAAAGCTTCTGTATGAAATGAGTTCTGTAAAGTTTGTAACTAAAACTTGACAAGGAAAAATGCAGCTTTTC</genome_strand>
        <mrna_strand>CGTCGATATCAGAATAAATCGATATGGTAACAAAGTTATTAGTTAGTCACTCAGTACATTTGCTTAGGCATAATGTTCACTCCTTGAGAGTCACAAGAAACAGTTTTATGAATTGAGAATATATTGCCAAAAAAGCTTCTGTATGAAATGAGTTCTGTAAAGTTTATGACTAAAACTTGACAAGGAAAAATCCAGCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746717" ref_strand="+" ref_description="SGN-E746717 [GI|51457949]">
      <seq>atggcgactctttccctttccccttccgtgggaacaacttttcactctctccatagctacccaaatggttcctcatcctattcttcttcttgtcccgctactgcttctccagctttgtcactgacattgtcatctaccaattcacgatttttaaattcagctttcaagatgaatgaaattaatgttcctgtcaggaatagggtgacaaaatcctttggggtccggatgtcttgggatggtccactttcttctgttaaactcattcttcaagggaaaaatcttgagttaacacctgctgtaaaggactatgtggaagagaagttgggtaaggcagttcaaaagcacagccatctagccagggaagtggatgttaggctgtctgttcgaggtggagagcttggaaaaggcccaaaaattcgaagatgtgaagttactctatttacgaaaaagcatggagtgattcgtgcagaggaagacggtgagtcaatttatggaagtatagatatggtatcatcaattatacagagaaagttgcggaaaattaaggagaaggattcagaccgtggtcgccacatgaagggcttcgataggctgaaagtcagggacccagaggcgctgttagttcaagaggatcttgaaacactttcccaagaggaagaagttgaagatgacaagagtgatggctttgttactgaggttgttcgtaagaagtcctttgacatgccacctttaagtgtcaatgaagcaattgaacagctggaaaatgtcgaccatgacttctatggtttccggaatgaggaaactggtgagattaacatcgtttacagacgaaaagaagggggttatggacttattattccaaaggaagatggtaaaacagagaagttagagcccttggaggttgaaccagagaaagaaccgtcgatagcagaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31296" stop="27333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30996" g_stop="30712" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30711" i_stop="29992" i_length="720">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29991" g_stop="29848" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="429" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29847" i_stop="29756" i_length="92">
            <donor d_prob="0.761" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29755" g_stop="29489" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="696" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29488" i_stop="27957" i_length="1532">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27956" g_stop="27848" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="805" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27847" i_stop="27764" i_length="84">
            <donor d_prob="0.581" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27763" g_stop="27633" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="806" r_stop="936" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E746717" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>936</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30996" e_stop="30712"/>
          <exon e_start="29991" e_stop="29848"/>
          <exon e_start="29755" e_stop="29489"/>
          <exon e_start="27956" e_stop="27848"/>
          <exon e_start="27763" e_stop="27633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAGGTCACACTCCTTAGGCCTTACAATATTATTATTTCCCTGCATTTTTTGCTTATATCTGCTAAAGTGTACTTCATAGGAACTTGGGTTTTCTGAAAAATAGTTAATTGATTTTGAATATACTCCTCTATCAAATGACTGCTCAGGTGCTATAAGGTCTATCAGAAACAACCTGTGTGTCCTGAAAAAGTAGGACTAAGATCTGCGTACTTAATAGTACCTTTTAGCATCTTATGTCTCTGTATCAAAATCTAATTTTGATGGGATCTACCATTTCAGTGAAAAATAGGGCACAATGAAAGAAAAATCTGTTAATGTGATAGCAATTAGTTGGATTTATAGTTTAGTCATGTTCTGTGTTTCTATTGGTTCTCTAATTTGTCAGAGAAGAAAATATAGAGAGCTTCTAGTATCTTTATTACTCATTGAGTCATTTCTAATTTTGTTTTGCTTAATGTTAGTTTGAGATGATCTTAAATGAAGGGACATGGTCAATGAGGATTCATATAGCTGAGCAAACTTATTGCGATTGTGTTGTAGCTGTTGTAGAAAAAATACGTATGAATTGACATCAAAAAAATTAGCTTGTTGGACTTTAACCATTTCAATAGCTAGTTCACAATGAAACAACAAGTCTTAGCAGATTGATTTCTCAAATGGAATTTATTTTTTTTGCTTTTAAAGTGTTCATGGTGGTGACTTATTGTCGTGGTGCAACTACAGTTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGAAAAGGCCCAAAAATTCGAAGATGTGAAGTGTGCACCAAAACTTGAAAATTCATTACATTAGGTTTTTGTTATTATTTTTATCATTCAAAATTTACTTGACTGACATTCCTGAACTATAGGTTACTCTATTTACGAAAAAGCATGGAGTGATTCGTGCAGAGGAAGACGGTGAGTCAATTTATGGAAGTATAGATATGGTATCATCAATTATACAGAGAAAGTTGCGGAAAATTAAGGAGAAGGATTCAGACCGTGGTCGCCACATGAAGGGCTTCGATAGGCTGAAAGTCAGGGACCCAGAGGCGCTGTTAGTTCAAGAGGATCTTGAAACACTTTCCCAAGAGGAAGAAGTTGAAGATGACAAGAGTGATGGCTTTGTTACTGAGGTTGTCTCTGAACTTATATGTTTTGCCAAATATTCTTCTTGCACTCAATTTTGTTGGTTACTACAAGTTTGCATGGCCTTTTAGCTTAGACTTGACTGAATTCCTAGCAACAGCGAGGATACATGTTTTTCACTGTGACTAAAGGGCTTTACTGGTGCTGGCAATTGATATTTTGCCCAATTAATATTTTTTAACTGAGTAGAATATCTGAATGAGTTTTGCTAATGTGTATTCCATTTTTGACGTTGGATGCCATACTCCGGTTCTATTATTCTTCCATAATATGTTTAGAGTATTACAGAAGAGAAGTAGTAAGAGACCAGGAACAAGACTATGTGATTATGCGATGATAAATAAGATGGTTATCATCTTTTTGTTTGATGTTTATGGTGGATCAGAGTAGAATTAGAATTGATGGGTGGAACAATATTTGGGTATCGTAATCTAGGATCTTGATAAAATATTAGACTTCATTTCCTGTGTCAGTTTTTAAATTTTATTCCAGTCCTTGAATTAGCAAGTATCTTGAACGGAGATAACTGTTAGCTGTTGTGGAGGTATGGTATGTTTCGCTTTAAAGGGAAAAACTTCGAAATTTTACGTTATAATGGTTCACCTAGAAAGCATTTGAAATACCATTTAGGAACGAAGATCTGGTGACCTTTATAGCAGTATGAACCTAAGTTGCGCGGACTCTTCACTTTCAATGCCGCACCCGTCTCAGGTTCTCCAAAAATTCACTACTTTTGGCAAATCCGACACGCACCCCTTGACATTATTGAAGAGTCCGAGCAACATAGGTATGAACAGGGTTGGCGTATGCCTTAAAACATCCTGATTTCTGATCTTAAGTTATGTGATAGCAGATGCCCCTGCCCATTTTCTCCTGGAACTCCCCTTCTTCATTTGTTGTATTTGCCAAATACTGAGGCATGTACATTAGGCTCATCTTTACAGTTACAGTGTTAATTTAAATTACAGGTGTAATATCCATTCCAGAATAAGGTTGTCTTTTTTTTGTATGGAACACACTTGTCCTTTCTGTTTCTACCATTCCAAATCCCCTCACTGCCTATCAAATGCCTGTGTCTTTATTCAACTCAAACCGAGCAGTCTATGCTGTAGCCAGATATTCATAATCTCTTCTTGATATAAATGCCTCGGTTGTTTCACAGCATGCTTTGTCAATCTCCCCAAGCAACGAAACGTGCTTTGTCACTTTTAAGTGAACAAAATCTTGTCTGTCGGGTGGATGTAGAACTGTAGATCACTTTCGACTCTTCCCTTTTATGCTTTTTACTGCCTGTTCTGCTGAATACTAAATGATGCACCAAGTCATTATTAGACATCACCCTCGAAATCCTAGCTTGAAATGTAATGATCTGATCGTCAAGATTTGCTACATTCGCTAAATGAGTATAAACAACCATTTTAATGGTTTATAATGTCTTAGATTTAGATTTACTGGGTATTTTGCCTAATGTTTCCAGAATTCTGTTCTCAAATTCACTTCCGTTCATATTTTATTTCAGGTTGTTCGTAAGAAGTCCTTTGACATGCCACCTTTAAGTGTCAATGAAGCAATTGAACAGCTGGAAAATGTCGACCATGACTTCTATGGTTTCCGGAATGAGGAAACTGGTACTGAGAAACATCCTTACAACATCATAAACAGTTTTCTAAATGCTTCAAGGTATTTTGTTAATGATTTTATGCTTGTTGCAGGTGAGATTAACATCGTTTACAGACGAAAAGAAGGGGGTTATGGACTTATTATTCCAAAGGAAGATGGTAAAACAGAGAAGTTAGAGCCCTTGGAGGTTGAACCAGAGAAAGAACCGTCGATAGCAGAATAA</genome_strand>
        <mrna_strand>ATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGAAAAGGCCCAAAAATTCGAAGATGTGAA............................................................................................GTTACTCTATTTACGAAAAAGCATGGAGTGATTCGTGCAGAGGAAGACGGTGAGTCAATTTATGGAAGTATAGATATGGTATCATCAATTATACAGAGAAAGTTGCGGAAAATTAAGGAGAAGGATTCAGACCGTGGTCGCCACATGAAGGGCTTCGATAGGCTGAAAGTCAGGGACCCAGAGGCGCTGTTAGTTCAAGAGGATCTTGAAACACTTTCCCAAGAGGAAGAAGTTGAAGATGACAAGAGTGATGGCTTTGTTACTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCGTAAGAAGTCCTTTGACATGCCACCTTTAAGTGTCAATGAAGCAATTGAACAGCTGGAAAATGTCGACCATGACTTCTATGGTTTCCGGAATGAGGAAACTG....................................................................................GTGAGATTAACATCGTTTACAGACGAAAAGAAGGGGGTTATGGACTTATTATTCCAAAGGAAGATGGTAAAACAGAGAAGTTAGAGCCCTTGGAGGTTGAACCAGAGAAAGAACCGTCGATAGCAGAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345960" ref_strand="+" ref_description="SGN-E345960 [cTOF-24-L18]">
      <seq>cactttcttctgttaaactcattcttcaagggaaaaatcttgagttaacacctgctgtaaaggactatgtggaagagaagttgggtaaggcagttcaaaagcacagccatctagccagggaagtggatgttaggctgtctgttcgaggtggagagcttggaaaaggcccaaaaattcgaagatgtgaagttactctatttacgaaaaagcatggagtgattcgtgcagaggaagacggtgagtcaatttatggaagtatagatatggtatcatcaattatacagagaaagttgcggaaaattaaggagaaggattcagaccgtggtcgccacatgaagggcttcgataggctgaaagtcagggacccagaggcgctgttagttcaagaggatcttgaaacactttcccaagaggaagaagttgaagatgacaagagtgatggctttgttactgaggttgttcgtaagaagtcctttgacatgccacctttaagtgtcaatgaagcaattgaacagctggaaaatgtcgaccatgacttctatggtttccggaatgaggaaactggtgagattaacatcgtttacagacgaaagaaaggggttatggacttattattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31055" stop="27410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30755" g_stop="30712" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30711" i_stop="29992" i_length="720">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29991" g_stop="29848" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="188" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29847" i_stop="29756" i_length="92">
            <donor d_prob="0.761" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29755" g_stop="29489" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="455" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29488" i_stop="27957" i_length="1532">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27956" g_stop="27848" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="564" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27847" i_stop="27764" i_length="84">
            <donor d_prob="0.581" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27763" g_stop="27710" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="617" r_length="53" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E345960" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30755" e_stop="30712"/>
          <exon e_start="29991" e_stop="29848"/>
          <exon e_start="29755" e_stop="29489"/>
          <exon e_start="27956" e_stop="27848"/>
          <exon e_start="27763" e_stop="27710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAGGTCACACTCCTTAGGCCTTACAATATTATTATTTCCCTGCATTTTTTGCTTATATCTGCTAAAGTGTACTTCATAGGAACTTGGGTTTTCTGAAAAATAGTTAATTGATTTTGAATATACTCCTCTATCAAATGACTGCTCAGGTGCTATAAGGTCTATCAGAAACAACCTGTGTGTCCTGAAAAAGTAGGACTAAGATCTGCGTACTTAATAGTACCTTTTAGCATCTTATGTCTCTGTATCAAAATCTAATTTTGATGGGATCTACCATTTCAGTGAAAAATAGGGCACAATGAAAGAAAAATCTGTTAATGTGATAGCAATTAGTTGGATTTATAGTTTAGTCATGTTCTGTGTTTCTATTGGTTCTCTAATTTGTCAGAGAAGAAAATATAGAGAGCTTCTAGTATCTTTATTACTCATTGAGTCATTTCTAATTTTGTTTTGCTTAATGTTAGTTTGAGATGATCTTAAATGAAGGGACATGGTCAATGAGGATTCATATAGCTGAGCAAACTTATTGCGATTGTGTTGTAGCTGTTGTAGAAAAAATACGTATGAATTGACATCAAAAAAATTAGCTTGTTGGACTTTAACCATTTCAATAGCTAGTTCACAATGAAACAACAAGTCTTAGCAGATTGATTTCTCAAATGGAATTTATTTTTTTTGCTTTTAAAGTGTTCATGGTGGTGACTTATTGTCGTGGTGCAACTACAGTTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGAAAAGGCCCAAAAATTCGAAGATGTGAAGTGTGCACCAAAACTTGAAAATTCATTACATTAGGTTTTTGTTATTATTTTTATCATTCAAAATTTACTTGACTGACATTCCTGAACTATAGGTTACTCTATTTACGAAAAAGCATGGAGTGATTCGTGCAGAGGAAGACGGTGAGTCAATTTATGGAAGTATAGATATGGTATCATCAATTATACAGAGAAAGTTGCGGAAAATTAAGGAGAAGGATTCAGACCGTGGTCGCCACATGAAGGGCTTCGATAGGCTGAAAGTCAGGGACCCAGAGGCGCTGTTAGTTCAAGAGGATCTTGAAACACTTTCCCAAGAGGAAGAAGTTGAAGATGACAAGAGTGATGGCTTTGTTACTGAGGTTGTCTCTGAACTTATATGTTTTGCCAAATATTCTTCTTGCACTCAATTTTGTTGGTTACTACAAGTTTGCATGGCCTTTTAGCTTAGACTTGACTGAATTCCTAGCAACAGCGAGGATACATGTTTTTCACTGTGACTAAAGGGCTTTACTGGTGCTGGCAATTGATATTTTGCCCAATTAATATTTTTTAACTGAGTAGAATATCTGAATGAGTTTTGCTAATGTGTATTCCATTTTTGACGTTGGATGCCATACTCCGGTTCTATTATTCTTCCATAATATGTTTAGAGTATTACAGAAGAGAAGTAGTAAGAGACCAGGAACAAGACTATGTGATTATGCGATGATAAATAAGATGGTTATCATCTTTTTGTTTGATGTTTATGGTGGATCAGAGTAGAATTAGAATTGATGGGTGGAACAATATTTGGGTATCGTAATCTAGGATCTTGATAAAATATTAGACTTCATTTCCTGTGTCAGTTTTTAAATTTTATTCCAGTCCTTGAATTAGCAAGTATCTTGAACGGAGATAACTGTTAGCTGTTGTGGAGGTATGGTATGTTTCGCTTTAAAGGGAAAAACTTCGAAATTTTACGTTATAATGGTTCACCTAGAAAGCATTTGAAATACCATTTAGGAACGAAGATCTGGTGACCTTTATAGCAGTATGAACCTAAGTTGCGCGGACTCTTCACTTTCAATGCCGCACCCGTCTCAGGTTCTCCAAAAATTCACTACTTTTGGCAAATCCGACACGCACCCCTTGACATTATTGAAGAGTCCGAGCAACATAGGTATGAACAGGGTTGGCGTATGCCTTAAAACATCCTGATTTCTGATCTTAAGTTATGTGATAGCAGATGCCCCTGCCCATTTTCTCCTGGAACTCCCCTTCTTCATTTGTTGTATTTGCCAAATACTGAGGCATGTACATTAGGCTCATCTTTACAGTTACAGTGTTAATTTAAATTACAGGTGTAATATCCATTCCAGAATAAGGTTGTCTTTTTTTTGTATGGAACACACTTGTCCTTTCTGTTTCTACCATTCCAAATCCCCTCACTGCCTATCAAATGCCTGTGTCTTTATTCAACTCAAACCGAGCAGTCTATGCTGTAGCCAGATATTCATAATCTCTTCTTGATATAAATGCCTCGGTTGTTTCACAGCATGCTTTGTCAATCTCCCCAAGCAACGAAACGTGCTTTGTCACTTTTAAGTGAACAAAATCTTGTCTGTCGGGTGGATGTAGAACTGTAGATCACTTTCGACTCTTCCCTTTTATGCTTTTTACTGCCTGTTCTGCTGAATACTAAATGATGCACCAAGTCATTATTAGACATCACCCTCGAAATCCTAGCTTGAAATGTAATGATCTGATCGTCAAGATTTGCTACATTCGCTAAATGAGTATAAACAACCATTTTAATGGTTTATAATGTCTTAGATTTAGATTTACTGGGTATTTTGCCTAATGTTTCCAGAATTCTGTTCTCAAATTCACTTCCGTTCATATTTTATTTCAGGTTGTTCGTAAGAAGTCCTTTGACATGCCACCTTTAAGTGTCAATGAAGCAATTGAACAGCTGGAAAATGTCGACCATGACTTCTATGGTTTCCGGAATGAGGAAACTGGTACTGAGAAACATCCTTACAACATCATAAACAGTTTTCTAAATGCTTCAAGGTATTTTGTTAATGATTTTATGCTTGTTGCAGGTGAGATTAACATCGTTTACAGACGAAAAGAAGGGGGTTATGGACTTATTATTC</genome_strand>
        <mrna_strand>CACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGAAAAGGCCCAAAAATTCGAAGATGTGAA............................................................................................GTTACTCTATTTACGAAAAAGCATGGAGTGATTCGTGCAGAGGAAGACGGTGAGTCAATTTATGGAAGTATAGATATGGTATCATCAATTATACAGAGAAAGTTGCGGAAAATTAAGGAGAAGGATTCAGACCGTGGTCGCCACATGAAGGGCTTCGATAGGCTGAAAGTCAGGGACCCAGAGGCGCTGTTAGTTCAAGAGGATCTTGAAACACTTTCCCAAGAGGAAGAAGTTGAAGATGACAAGAGTGATGGCTTTGTTACTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCGTAAGAAGTCCTTTGACATGCCACCTTTAAGTGTCAATGAAGCAATTGAACAGCTGGAAAATGTCGACCATGACTTCTATGGTTTCCGGAATGAGGAAACTG....................................................................................GTGAGATTAACATCGTTTACAGACG-AAAGAAAGGGGTTATGGACTTATTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347158" ref_strand="+" ref_description="SGN-E347158 [cTOF-25-A20]">
      <seq>cactttcttctgttaaactcattcttcaagggaaaaatcttgagttaacacctgctgtaaaggactatgtggaagagaagttgggtaaggcagttcaaaagcacagccatctagccagggaagtggatgttaggctgtctgttcgaggtggagagcttggaaaaggcccaaaaattcgaagatgtgaagttactctatttacgaaaaagcatggagtgattcgtgcagaggaagacggtgagtcaatttatggaagtatagatatggtatcatcaattatacagagaaagttgcggaaaattaaggagaaggattcagaccgtggtcgccacatgaagggcttcgataggctgaaagtcagggacccagaggcgctgttagttcaagaggatcttgaaacactttcccaagaggaagaagttgaagatgacaagagtgatggctttgttactgaggttgttcgtaagaagtcctttgacatgccacctttaagtgtcaatgaagcaattgaacagctggaaaatgtcgaccatgacttctatggtttccggaatgaagaaactggtgagattaacatcgtttacagacgaaaagaagggggttatggacttattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31055" stop="27411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30755" g_stop="30712" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30711" i_stop="29992" i_length="720">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29991" g_stop="29848" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="188" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29847" i_stop="29756" i_length="92">
            <donor d_prob="0.761" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29755" g_stop="29489" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="455" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29488" i_stop="27957" i_length="1532">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27956" g_stop="27848" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="564" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27847" i_stop="27764" i_length="84">
            <donor d_prob="0.581" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27763" g_stop="27711" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="617" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E347158" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30755" e_stop="30712"/>
          <exon e_start="29991" e_stop="29848"/>
          <exon e_start="29755" e_stop="29489"/>
          <exon e_start="27956" e_stop="27848"/>
          <exon e_start="27763" e_stop="27711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAGGTCACACTCCTTAGGCCTTACAATATTATTATTTCCCTGCATTTTTTGCTTATATCTGCTAAAGTGTACTTCATAGGAACTTGGGTTTTCTGAAAAATAGTTAATTGATTTTGAATATACTCCTCTATCAAATGACTGCTCAGGTGCTATAAGGTCTATCAGAAACAACCTGTGTGTCCTGAAAAAGTAGGACTAAGATCTGCGTACTTAATAGTACCTTTTAGCATCTTATGTCTCTGTATCAAAATCTAATTTTGATGGGATCTACCATTTCAGTGAAAAATAGGGCACAATGAAAGAAAAATCTGTTAATGTGATAGCAATTAGTTGGATTTATAGTTTAGTCATGTTCTGTGTTTCTATTGGTTCTCTAATTTGTCAGAGAAGAAAATATAGAGAGCTTCTAGTATCTTTATTACTCATTGAGTCATTTCTAATTTTGTTTTGCTTAATGTTAGTTTGAGATGATCTTAAATGAAGGGACATGGTCAATGAGGATTCATATAGCTGAGCAAACTTATTGCGATTGTGTTGTAGCTGTTGTAGAAAAAATACGTATGAATTGACATCAAAAAAATTAGCTTGTTGGACTTTAACCATTTCAATAGCTAGTTCACAATGAAACAACAAGTCTTAGCAGATTGATTTCTCAAATGGAATTTATTTTTTTTGCTTTTAAAGTGTTCATGGTGGTGACTTATTGTCGTGGTGCAACTACAGTTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGAAAAGGCCCAAAAATTCGAAGATGTGAAGTGTGCACCAAAACTTGAAAATTCATTACATTAGGTTTTTGTTATTATTTTTATCATTCAAAATTTACTTGACTGACATTCCTGAACTATAGGTTACTCTATTTACGAAAAAGCATGGAGTGATTCGTGCAGAGGAAGACGGTGAGTCAATTTATGGAAGTATAGATATGGTATCATCAATTATACAGAGAAAGTTGCGGAAAATTAAGGAGAAGGATTCAGACCGTGGTCGCCACATGAAGGGCTTCGATAGGCTGAAAGTCAGGGACCCAGAGGCGCTGTTAGTTCAAGAGGATCTTGAAACACTTTCCCAAGAGGAAGAAGTTGAAGATGACAAGAGTGATGGCTTTGTTACTGAGGTTGTCTCTGAACTTATATGTTTTGCCAAATATTCTTCTTGCACTCAATTTTGTTGGTTACTACAAGTTTGCATGGCCTTTTAGCTTAGACTTGACTGAATTCCTAGCAACAGCGAGGATACATGTTTTTCACTGTGACTAAAGGGCTTTACTGGTGCTGGCAATTGATATTTTGCCCAATTAATATTTTTTAACTGAGTAGAATATCTGAATGAGTTTTGCTAATGTGTATTCCATTTTTGACGTTGGATGCCATACTCCGGTTCTATTATTCTTCCATAATATGTTTAGAGTATTACAGAAGAGAAGTAGTAAGAGACCAGGAACAAGACTATGTGATTATGCGATGATAAATAAGATGGTTATCATCTTTTTGTTTGATGTTTATGGTGGATCAGAGTAGAATTAGAATTGATGGGTGGAACAATATTTGGGTATCGTAATCTAGGATCTTGATAAAATATTAGACTTCATTTCCTGTGTCAGTTTTTAAATTTTATTCCAGTCCTTGAATTAGCAAGTATCTTGAACGGAGATAACTGTTAGCTGTTGTGGAGGTATGGTATGTTTCGCTTTAAAGGGAAAAACTTCGAAATTTTACGTTATAATGGTTCACCTAGAAAGCATTTGAAATACCATTTAGGAACGAAGATCTGGTGACCTTTATAGCAGTATGAACCTAAGTTGCGCGGACTCTTCACTTTCAATGCCGCACCCGTCTCAGGTTCTCCAAAAATTCACTACTTTTGGCAAATCCGACACGCACCCCTTGACATTATTGAAGAGTCCGAGCAACATAGGTATGAACAGGGTTGGCGTATGCCTTAAAACATCCTGATTTCTGATCTTAAGTTATGTGATAGCAGATGCCCCTGCCCATTTTCTCCTGGAACTCCCCTTCTTCATTTGTTGTATTTGCCAAATACTGAGGCATGTACATTAGGCTCATCTTTACAGTTACAGTGTTAATTTAAATTACAGGTGTAATATCCATTCCAGAATAAGGTTGTCTTTTTTTTGTATGGAACACACTTGTCCTTTCTGTTTCTACCATTCCAAATCCCCTCACTGCCTATCAAATGCCTGTGTCTTTATTCAACTCAAACCGAGCAGTCTATGCTGTAGCCAGATATTCATAATCTCTTCTTGATATAAATGCCTCGGTTGTTTCACAGCATGCTTTGTCAATCTCCCCAAGCAACGAAACGTGCTTTGTCACTTTTAAGTGAACAAAATCTTGTCTGTCGGGTGGATGTAGAACTGTAGATCACTTTCGACTCTTCCCTTTTATGCTTTTTACTGCCTGTTCTGCTGAATACTAAATGATGCACCAAGTCATTATTAGACATCACCCTCGAAATCCTAGCTTGAAATGTAATGATCTGATCGTCAAGATTTGCTACATTCGCTAAATGAGTATAAACAACCATTTTAATGGTTTATAATGTCTTAGATTTAGATTTACTGGGTATTTTGCCTAATGTTTCCAGAATTCTGTTCTCAAATTCACTTCCGTTCATATTTTATTTCAGGTTGTTCGTAAGAAGTCCTTTGACATGCCACCTTTAAGTGTCAATGAAGCAATTGAACAGCTGGAAAATGTCGACCATGACTTCTATGGTTTCCGGAATGAGGAAACTGGTACTGAGAAACATCCTTACAACATCATAAACAGTTTTCTAAATGCTTCAAGGTATTTTGTTAATGATTTTATGCTTGTTGCAGGTGAGATTAACATCGTTTACAGACGAAAAGAAGGGGGTTATGGACTTATTATT</genome_strand>
        <mrna_strand>CACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGAAAAGGCCCAAAAATTCGAAGATGTGAA............................................................................................GTTACTCTATTTACGAAAAAGCATGGAGTGATTCGTGCAGAGGAAGACGGTGAGTCAATTTATGGAAGTATAGATATGGTATCATCAATTATACAGAGAAAGTTGCGGAAAATTAAGGAGAAGGATTCAGACCGTGGTCGCCACATGAAGGGCTTCGATAGGCTGAAAGTCAGGGACCCAGAGGCGCTGTTAGTTCAAGAGGATCTTGAAACACTTTCCCAAGAGGAAGAAGTTGAAGATGACAAGAGTGATGGCTTTGTTACTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCGTAAGAAGTCCTTTGACATGCCACCTTTAAGTGTCAATGAAGCAATTGAACAGCTGGAAAATGTCGACCATGACTTCTATGGTTTCCGGAATGAAGAAACTG....................................................................................GTGAGATTAACATCGTTTACAGACGAAAAGAAGGGGGTTATGGACTTATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729898" ref_strand="+" ref_description="SGN-E729898 [LA22BG06]">
      <seq>caaagttccaatctttatcaagaacccacaaaattcatcaacccatttgaagtgttttactccttaaatcgataaattgactcaaaaatctccagttactactgttcctgcaatatacaacaatggcgactctttccctttccccttccgtgggaacaacttttcactctctccatagctacccaaatggttcctcatcctattcttcttcttgtcccgctactgcttctccagctttgtcactgacattgtcatctaccaattcacgatttttaaattcagctttcaagatgaatgaaattaatgttcctgtcaggaatagggtgacaaaatcctttggggtccggatgtcttgggatggtccactttcttctgttaaactcattcttcaagggaaaaatcttgagttaacacctgctgtaaaggactatgtggaagagaagttgggtaaggcagttcaaaagcacagccatctagccagggaagtggatgttaggctgtctgttcgaggtggagagcttggaaaaggcccaaaaattcgaagatgtgaagttactctatttacgaaaaagcatggagtgattcgtgcagaggaagacggtgagtcaatttatggaagtatagatatggtatcatcaattatacagagaaagttgcggaaaattaaggagaaggattcagaccgtggtcgccacatgaagggcttcgataggctgaaagtcagggacccagaggcgctgttagttcaagaggatcttgaaacactttcccaagaggaagaagttgaagatgacaagagtgatggctttgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31418" stop="29193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31118" g_stop="30712" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30711" i_stop="29992" i_length="720">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29991" g_stop="29848" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="551" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29847" i_stop="29756" i_length="92">
            <donor d_prob="0.761" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29755" g_stop="29493" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="814" r_length="263" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E729898" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31118" e_stop="30712"/>
          <exon e_start="29991" e_stop="29848"/>
          <exon e_start="29755" e_stop="29493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTTCCAATCTTTATCAAGAACCCACAAAATTCATCAACCCATTTGAAGTGTTTTACTCCTTAAATCGATAAATTGACTCAAAAATCTCCAGTTACTACTGTTCCTGCAATATACAACAATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAGGTCACACTCCTTAGGCCTTACAATATTATTATTTCCCTGCATTTTTTGCTTATATCTGCTAAAGTGTACTTCATAGGAACTTGGGTTTTCTGAAAAATAGTTAATTGATTTTGAATATACTCCTCTATCAAATGACTGCTCAGGTGCTATAAGGTCTATCAGAAACAACCTGTGTGTCCTGAAAAAGTAGGACTAAGATCTGCGTACTTAATAGTACCTTTTAGCATCTTATGTCTCTGTATCAAAATCTAATTTTGATGGGATCTACCATTTCAGTGAAAAATAGGGCACAATGAAAGAAAAATCTGTTAATGTGATAGCAATTAGTTGGATTTATAGTTTAGTCATGTTCTGTGTTTCTATTGGTTCTCTAATTTGTCAGAGAAGAAAATATAGAGAGCTTCTAGTATCTTTATTACTCATTGAGTCATTTCTAATTTTGTTTTGCTTAATGTTAGTTTGAGATGATCTTAAATGAAGGGACATGGTCAATGAGGATTCATATAGCTGAGCAAACTTATTGCGATTGTGTTGTAGCTGTTGTAGAAAAAATACGTATGAATTGACATCAAAAAAATTAGCTTGTTGGACTTTAACCATTTCAATAGCTAGTTCACAATGAAACAACAAGTCTTAGCAGATTGATTTCTCAAATGGAATTTATTTTTTTTGCTTTTAAAGTGTTCATGGTGGTGACTTATTGTCGTGGTGCAACTACAGTTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGAAAAGGCCCAAAAATTCGAAGATGTGAAGTGTGCACCAAAACTTGAAAATTCATTACATTAGGTTTTTGTTATTATTTTTATCATTCAAAATTTACTTGACTGACATTCCTGAACTATAGGTTACTCTATTTACGAAAAAGCATGGAGTGATTCGTGCAGAGGAAGACGGTGAGTCAATTTATGGAAGTATAGATATGGTATCATCAATTATACAGAGAAAGTTGCGGAAAATTAAGGAGAAGGATTCAGACCGTGGTCGCCACATGAAGGGCTTCGATAGGCTGAAAGTCAGGGACCCAGAGGCGCTGTTAGTTCAAGAGGATCTTGAAACACTTTCCCAAGAGGAAGAAGTTGAAGATGACAAGAGTGATGGCTTTGTTAC</genome_strand>
        <mrna_strand>CAAAGTTCCAATCTTTATCAAGAACCCACAAAATTCATCAACCCATTTGAAGTGTTTTACTCCTTAAATCGATAAATTGACTCAAAAATCTCCAGTTACTACTGTTCCTGCAATATACAACAATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGAAAAGGCCCAAAAATTCGAAGATGTGAA............................................................................................GTTACTCTATTTACGAAAAAGCATGGAGTGATTCGTGCAGAGGAAGACGGTGAGTCAATTTATGGAAGTATAGATATGGTATCATCAATTATACAGAGAAAGTTGCGGAAAATTAAGGAGAAGGATTCAGACCGTGGTCGCCACATGAAGGGCTTCGATAGGCTGAAAGTCAGGGACCCAGAGGCGCTGTTAGTTCAAGAGGATCTTGAAACACTTTCCCAAGAGGAAGAAGTTGAAGATGACAAGAGTGATGGCTTTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291887" ref_strand="+" ref_description="SGN-E291887 [cLET-7-F6]">
      <seq>taaaggactatgtggaagagaagttgggtaaggcagttcaaaagcacagccatctagccagggaagtggatgttaggctgtctgttcgaggtggagagcttggaaaaggcccaaaaattcgaagatgtgaagttactctatttacgaaaaagcatggagtgattcgtgcagaggaagacggtgagtcaatttatggaagtatagatatggtatcatcaattatacagagaaagttgcggaaaattaaggagaaggattcagaccgtggtcgccacatgaagggcttcgataggctgaaagtcaggacccagaggcgctgttagttcaagaggatcttgaaacactttcccaagaggaagaagttgaagatgacaagagtgatggctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30278" stop="29197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29978" g_stop="29848" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29847" i_stop="29756" i_length="92">
            <donor d_prob="0.761" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29755" g_stop="29497" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="389" r_length="258" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E291887" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29978" e_stop="29848"/>
          <exon e_start="29755" e_stop="29497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGAAAAGGCCCAAAAATTCGAAGATGTGAAGTGTGCACCAAAACTTGAAAATTCATTACATTAGGTTTTTGTTATTATTTTTATCATTCAAAATTTACTTGACTGACATTCCTGAACTATAGGTTACTCTATTTACGAAAAAGCATGGAGTGATTCGTGCAGAGGAAGACGGTGAGTCAATTTATGGAAGTATAGATATGGTATCATCAATTATACAGAGAAAGTTGCGGAAAATTAAGGAGAAGGATTCAGACCGTGGTCGCCACATGAAGGGCTTCGATAGGCTGAAAGTCAGGGACCCAGAGGCGCTGTTAGTTCAAGAGGATCTTGAAACACTTTCCCAAGAGGAAGAAGTTGAAGATGACAAGAGTGATGGCTTTG</genome_strand>
        <mrna_strand>TAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGAAAAGGCCCAAAAATTCGAAGATGTGAA............................................................................................GTTACTCTATTTACGAAAAAGCATGGAGTGATTCGTGCAGAGGAAGACGGTGAGTCAATTTATGGAAGTATAGATATGGTATCATCAATTATACAGAGAAAGTTGCGGAAAATTAAGGAGAAGGATTCAGACCGTGGTCGCCACATGAAGGGCTTCGATAGGCTGAAAGTCA-GGACCCAGAGGCGCTGTTAGTTCAAGAGGATCTTGAAACACTTTCCCAAGAGGAAGAAGTTGAAGATGACAAGAGTGATGGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370594" ref_strand="+" ref_description="SGN-E370594 [TUS-27-M12]">
      <seq>aatggcgactctttccctttccccttccgtgggaacaacttttcactctctccatagctacccaaatggttcctcatcctattcttcttcttgtcccgctactgcttctccagctttgtcactgacattgtcatctaccaattcacgatttttaaattcagctttcaagatgaatgaaattaatgttcctgtcaggaatagggtgacaaaatcctttggggtccggatgtcttgggatggtccactttcttctgttaaactcattcttcaagggaaaaatcttgagttaacacctgctgtaaaggactatgtggaagagaagttgggtaaggcagttcaaaagcacagccatctagccagggaagtggatgttaggctgtctgttcgaggtggagagcttggaaaaggcccaaaaattcgaagatgtgaagttactctatttacgaaaaagcatggagtgattcgtgcagaggaagacggtgagtcaatttatggaagtatagatatggtatcatcaattatacagagaaagttgcggaaaattaaggagaaggattcagaccgtggtcgccacatgaagggcttctataggctgaaagtcagggacccagaggcgctgttagttcaagaggatcttgaaacactttccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31297" stop="29235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30997" g_stop="30712" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30711" i_stop="29992" i_length="720">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29991" g_stop="29848" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="430" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29847" i_stop="29756" i_length="92">
            <donor d_prob="0.761" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29755" g_stop="29535" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="651" r_length="221" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E370594" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30997" e_stop="30712"/>
          <exon e_start="29991" e_stop="29848"/>
          <exon e_start="29755" e_stop="29535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAGGTCACACTCCTTAGGCCTTACAATATTATTATTTCCCTGCATTTTTTGCTTATATCTGCTAAAGTGTACTTCATAGGAACTTGGGTTTTCTGAAAAATAGTTAATTGATTTTGAATATACTCCTCTATCAAATGACTGCTCAGGTGCTATAAGGTCTATCAGAAACAACCTGTGTGTCCTGAAAAAGTAGGACTAAGATCTGCGTACTTAATAGTACCTTTTAGCATCTTATGTCTCTGTATCAAAATCTAATTTTGATGGGATCTACCATTTCAGTGAAAAATAGGGCACAATGAAAGAAAAATCTGTTAATGTGATAGCAATTAGTTGGATTTATAGTTTAGTCATGTTCTGTGTTTCTATTGGTTCTCTAATTTGTCAGAGAAGAAAATATAGAGAGCTTCTAGTATCTTTATTACTCATTGAGTCATTTCTAATTTTGTTTTGCTTAATGTTAGTTTGAGATGATCTTAAATGAAGGGACATGGTCAATGAGGATTCATATAGCTGAGCAAACTTATTGCGATTGTGTTGTAGCTGTTGTAGAAAAAATACGTATGAATTGACATCAAAAAAATTAGCTTGTTGGACTTTAACCATTTCAATAGCTAGTTCACAATGAAACAACAAGTCTTAGCAGATTGATTTCTCAAATGGAATTTATTTTTTTTGCTTTTAAAGTGTTCATGGTGGTGACTTATTGTCGTGGTGCAACTACAGTTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGAAAAGGCCCAAAAATTCGAAGATGTGAAGTGTGCACCAAAACTTGAAAATTCATTACATTAGGTTTTTGTTATTATTTTTATCATTCAAAATTTACTTGACTGACATTCCTGAACTATAGGTTACTCTATTTACGAAAAAGCATGGAGTGATTCGTGCAGAGGAAGACGGTGAGTCAATTTATGGAAGTATAGATATGGTATCATCAATTATACAGAGAAAGTTGCGGAAAATTAAGGAGAAGGATTCAGACCGTGGTCGCCACATGAAGGGCTTCGATAGGCTGAAAGTCAGGGACCCAGAGGCGCTGTTAGTTCAAGAGGATCTTGAAACACTTTCCCA</genome_strand>
        <mrna_strand>AATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGAAAAGGCCCAAAAATTCGAAGATGTGAA............................................................................................GTTACTCTATTTACGAAAAAGCATGGAGTGATTCGTGCAGAGGAAGACGGTGAGTCAATTTATGGAAGTATAGATATGGTATCATCAATTATACAGAGAAAGTTGCGGAAAATTAAGGAGAAGGATTCAGACCGTGGTCGCCACATGAAGGGCTTCTATAGGCTGAAAGTCAGGGACCCAGAGGCGCTGTTAGTTCAAGAGGATCTTGAAACACTTTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731553" ref_strand="+" ref_description="SGN-E731553 [LA27BH11]">
      <seq>caacaaagcaactgtgattctcctacaaagttccaatctttatcaagaacccacaaaattcatcaacccatttgaagtgttttactccttaaatcgataaattgactcaaaaatctccagttactactgttcctgcaatatacaacaatggcgactctttccctttccccttccgtgggaacaacttttcactctctccatagctacccaaatggttcctcatcctattcttcttcttgtcccgctactgcttctccagctttgtcactgacattgtcatctaccaattcacgatttttaaattcagctttcaagatgaatgaaattaatgttcctgtcaggaatagggtgacaaaatcctttggggtccggatgtcttgggatggtccactttcttctgttaaactcattcttcaagggaaaaatcttgagttaacacctgctgtaaaggactatgtggaagagaagttgggtaaggcagttcaaaagcacagccatctagccagggaagtggatgttaggctgtctgttcgaggtggagagcttggaaaaggcccaaaaattcgaagatgtgaagttactctatttacgaaaaagcatggagtgattcgtgcagaggaagacggtgagtcaatttatggaagtatagatatggtatcatcaattatacagagaaagttgcggaaaattaaggagaaggattcagaccgtggtcgccacatgaagggcttcgataggctgaaagtcagggacccagaggcgctgttaattcaagaggatcttgaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31443" stop="29243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31143" g_stop="30712" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30711" i_stop="29992" i_length="720">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29991" g_stop="29848" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="576" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29847" i_stop="29756" i_length="92">
            <donor d_prob="0.761" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29755" g_stop="29543" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="789" r_length="213" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E731553" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31143" e_stop="30712"/>
          <exon e_start="29991" e_stop="29848"/>
          <exon e_start="29755" e_stop="29543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAAAGCAACTGTGATTCTCCTACAAAGTTCCAATCTTTATCAAGAACCCACAAAATTCATCAACCCATTTGAAGTGTTTTACTCCTTAAATCGATAAATTGACTCAAAAATCTCCAGTTACTACTGTTCCTGCAATATACAACAATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAGGTCACACTCCTTAGGCCTTACAATATTATTATTTCCCTGCATTTTTTGCTTATATCTGCTAAAGTGTACTTCATAGGAACTTGGGTTTTCTGAAAAATAGTTAATTGATTTTGAATATACTCCTCTATCAAATGACTGCTCAGGTGCTATAAGGTCTATCAGAAACAACCTGTGTGTCCTGAAAAAGTAGGACTAAGATCTGCGTACTTAATAGTACCTTTTAGCATCTTATGTCTCTGTATCAAAATCTAATTTTGATGGGATCTACCATTTCAGTGAAAAATAGGGCACAATGAAAGAAAAATCTGTTAATGTGATAGCAATTAGTTGGATTTATAGTTTAGTCATGTTCTGTGTTTCTATTGGTTCTCTAATTTGTCAGAGAAGAAAATATAGAGAGCTTCTAGTATCTTTATTACTCATTGAGTCATTTCTAATTTTGTTTTGCTTAATGTTAGTTTGAGATGATCTTAAATGAAGGGACATGGTCAATGAGGATTCATATAGCTGAGCAAACTTATTGCGATTGTGTTGTAGCTGTTGTAGAAAAAATACGTATGAATTGACATCAAAAAAATTAGCTTGTTGGACTTTAACCATTTCAATAGCTAGTTCACAATGAAACAACAAGTCTTAGCAGATTGATTTCTCAAATGGAATTTATTTTTTTTGCTTTTAAAGTGTTCATGGTGGTGACTTATTGTCGTGGTGCAACTACAGTTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGAAAAGGCCCAAAAATTCGAAGATGTGAAGTGTGCACCAAAACTTGAAAATTCATTACATTAGGTTTTTGTTATTATTTTTATCATTCAAAATTTACTTGACTGACATTCCTGAACTATAGGTTACTCTATTTACGAAAAAGCATGGAGTGATTCGTGCAGAGGAAGACGGTGAGTCAATTTATGGAAGTATAGATATGGTATCATCAATTATACAGAGAAAGTTGCGGAAAATTAAGGAGAAGGATTCAGACCGTGGTCGCCACATGAAGGGCTTCGATAGGCTGAAAGTCAGGGACCCAGAGGCGCTGTTAGTTCAAGAGGATCTTGAAACA</genome_strand>
        <mrna_strand>CAACAAAGCAACTGTGATTCTCCTACAAAGTTCCAATCTTTATCAAGAACCCACAAAATTCATCAACCCATTTGAAGTGTTTTACTCCTTAAATCGATAAATTGACTCAAAAATCTCCAGTTACTACTGTTCCTGCAATATACAACAATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGAAAAGGCCCAAAAATTCGAAGATGTGAA............................................................................................GTTACTCTATTTACGAAAAAGCATGGAGTGATTCGTGCAGAGGAAGACGGTGAGTCAATTTATGGAAGTATAGATATGGTATCATCAATTATACAGAGAAAGTTGCGGAAAATTAAGGAGAAGGATTCAGACCGTGGTCGCCACATGAAGGGCTTCGATAGGCTGAAAGTCAGGGACCCAGAGGCGCTGTTAATTCAAGAGGATCTTGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271233" ref_strand="+" ref_description="SGN-E271233 [cLEM-5-I20]">
      <seq>aatggcgactctttccctttccccttccgtgggaacaacttttcactctctccatagctacccaaatggttcctcatcctattcttcttcttgtcccgctactgcttctccagctttgtcactgacattgtcatctaccaattcacgatttttaaattcagctttcaagatgaatgaaattaatgttcctgtcaggaatagggtgacaaaatcctttggggtccggatgtcttgggatggtccactttcttctgttaaactcattcttcaagggaaaaatcttgagttaacacctgctgtaaaggactatgtggaagagaagttgggtaaggcagttcaaaagcacagccatctagccagggaagtggatgttaggctgtctgttcgaggtggagagcttggaaaaggcccaaaaattcgaagatgtgaagttactctatttacgaaaaagcatggagtgattcgtgcagaggaagacggtgagtcaatttatggaagtatagatatggtatcatcaattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31297" stop="29364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30997" g_stop="30712" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30711" i_stop="29992" i_length="720">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29991" g_stop="29848" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="430" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29847" i_stop="29756" i_length="92">
            <donor d_prob="0.761" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29755" g_stop="29664" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="522" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E271233" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30997" e_stop="30712"/>
          <exon e_start="29991" e_stop="29848"/>
          <exon e_start="29755" e_stop="29664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAGGTCACACTCCTTAGGCCTTACAATATTATTATTTCCCTGCATTTTTTGCTTATATCTGCTAAAGTGTACTTCATAGGAACTTGGGTTTTCTGAAAAATAGTTAATTGATTTTGAATATACTCCTCTATCAAATGACTGCTCAGGTGCTATAAGGTCTATCAGAAACAACCTGTGTGTCCTGAAAAAGTAGGACTAAGATCTGCGTACTTAATAGTACCTTTTAGCATCTTATGTCTCTGTATCAAAATCTAATTTTGATGGGATCTACCATTTCAGTGAAAAATAGGGCACAATGAAAGAAAAATCTGTTAATGTGATAGCAATTAGTTGGATTTATAGTTTAGTCATGTTCTGTGTTTCTATTGGTTCTCTAATTTGTCAGAGAAGAAAATATAGAGAGCTTCTAGTATCTTTATTACTCATTGAGTCATTTCTAATTTTGTTTTGCTTAATGTTAGTTTGAGATGATCTTAAATGAAGGGACATGGTCAATGAGGATTCATATAGCTGAGCAAACTTATTGCGATTGTGTTGTAGCTGTTGTAGAAAAAATACGTATGAATTGACATCAAAAAAATTAGCTTGTTGGACTTTAACCATTTCAATAGCTAGTTCACAATGAAACAACAAGTCTTAGCAGATTGATTTCTCAAATGGAATTTATTTTTTTTGCTTTTAAAGTGTTCATGGTGGTGACTTATTGTCGTGGTGCAACTACAGTTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGAAAAGGCCCAAAAATTCGAAGATGTGAAGTGTGCACCAAAACTTGAAAATTCATTACATTAGGTTTTTGTTATTATTTTTATCATTCAAAATTTACTTGACTGACATTCCTGAACTATAGGTTACTCTATTTACGAAAAAGCATGGAGTGATTCGTGCAGAGGAAGACGGTGAGTCAATTTATGGAAGTATAGATATGGTATCATCAATTAT</genome_strand>
        <mrna_strand>AATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGAAAAGGCCCAAAAATTCGAAGATGTGAA............................................................................................GTTACTCTATTTACGAAAAAGCATGGAGTGATTCGTGCAGAGGAAGACGGTGAGTCAATTTATGGAAGTATAGATATGGTATCATCAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200173" ref_strand="+" ref_description="SGN-E200173 [cLEB-7-J19]">
      <seq>gcacgagaaagcaactgtgattctcctacaaatttccaatctttatcaagaacccacaaaattcatcaacccatttgaagtgttttactccttaaatcgataaattgactcaaaaatctccagttactactgttcctgcaatatacaacaatggcgactctttccctttccccttccgtgggaacaacttttcactctctccatagctacccaaatggttcctcatcctattcttcttcttgtcccgctactgcttctccagctttgtcactgacattgtcatctaccaattcacgatttttaaattcagctttcaagatgaatgaaattaatgttcctgtcaggaatagggtgacaaaatcctttggggtccggatgtcttgggatggtccactttcttctgttaaactcattcttcaagggaaaaatcttgagttaacacctgctgtaaaggactatgtggaagagaagttgggtaaggcagttcaaaagcacagccatctagccagggaagtggatgttaggctgtctgttcgaggtggagagcttggaaaaggcccaaaaattcgaagatgtgaagttactctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31443" stop="29538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31146" g_stop="30712" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30711" i_stop="29992" i_length="720">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29991" g_stop="29848" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="579" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29847" i_stop="29756" i_length="92">
            <donor d_prob="0.761" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29755" g_stop="29745" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="590" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E200173" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31146" e_stop="30712"/>
          <exon e_start="29991" e_stop="29848"/>
          <exon e_start="29755" e_stop="29745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAACAAAGCAACTGTGATTCTCCTACAAAGTTCCAATCTTTATCAAGAACCCACAAAATTCATCAACCCATTTGAAGTGTTTTACTCCTTAAATCGATAAATTGACTCAAAAATCTCCAGTTACTACTGTTCCTGCAATATACAACAATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAGGTCACACTCCTTAGGCCTTACAATATTATTATTTCCCTGCATTTTTTGCTTATATCTGCTAAAGTGTACTTCATAGGAACTTGGGTTTTCTGAAAAATAGTTAATTGATTTTGAATATACTCCTCTATCAAATGACTGCTCAGGTGCTATAAGGTCTATCAGAAACAACCTGTGTGTCCTGAAAAAGTAGGACTAAGATCTGCGTACTTAATAGTACCTTTTAGCATCTTATGTCTCTGTATCAAAATCTAATTTTGATGGGATCTACCATTTCAGTGAAAAATAGGGCACAATGAAAGAAAAATCTGTTAATGTGATAGCAATTAGTTGGATTTATAGTTTAGTCATGTTCTGTGTTTCTATTGGTTCTCTAATTTGTCAGAGAAGAAAATATAGAGAGCTTCTAGTATCTTTATTACTCATTGAGTCATTTCTAATTTTGTTTTGCTTAATGTTAGTTTGAGATGATCTTAAATGAAGGGACATGGTCAATGAGGATTCATATAGCTGAGCAAACTTATTGCGATTGTGTTGTAGCTGTTGTAGAAAAAATACGTATGAATTGACATCAAAAAAATTAGCTTGTTGGACTTTAACCATTTCAATAGCTAGTTCACAATGAAACAACAAGTCTTAGCAGATTGATTTCTCAAATGGAATTTATTTTTTTTGCTTTTAAAGTGTTCATGGTGGTGACTTATTGTCGTGGTGCAACTACAGTTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGAAAAGGCCCAAAAATTCGAAGATGTGAAGTGTGCACCAAAACTTGAAAATTCATTACATTAGGTTTTTGTTATTATTTTTATCATTCAAAATTTACTTGACTGACATTCCTGAACTATAGGTTACTCTATT</genome_strand>
        <mrna_strand>GCACGAGAAAGCAACTGTGATTCTCCTACAAATTTCCAATCTTTATCAAGAACCCACAAAATTCATCAACCCATTTGAAGTGTTTTACTCCTTAAATCGATAAATTGACTCAAAAATCTCCAGTTACTACTGTTCCTGCAATATACAACAATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGAAAAGGCCCAAAAATTCGAAGATGTGAA............................................................................................GTTACTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313931" ref_strand="+" ref_description="SGN-E313931 [cTOA-19-E23]">
      <seq>ttcttcaagggaaaaatcttgagttaacacctgctgtaaaggactatgtgcaagagaagttgggtaaggcatttcaaaagcacagccatctatccagggaagtggatgttaggctgtctgttcgaggtggagagcttggaaaaggcccaaaaattcgaagatgtgaagttactctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31034" stop="29538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30734" g_stop="30712" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30711" i_stop="29992" i_length="720">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29991" g_stop="29848" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="167" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29847" i_stop="29756" i_length="92">
            <donor d_prob="0.761" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29755" g_stop="29745" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="178" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E313931" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>178</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30734" e_stop="30712"/>
          <exon e_start="29991" e_stop="29848"/>
          <exon e_start="29755" e_stop="29745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCAAGGGAAAAATCTTGAGGTCACACTCCTTAGGCCTTACAATATTATTATTTCCCTGCATTTTTTGCTTATATCTGCTAAAGTGTACTTCATAGGAACTTGGGTTTTCTGAAAAATAGTTAATTGATTTTGAATATACTCCTCTATCAAATGACTGCTCAGGTGCTATAAGGTCTATCAGAAACAACCTGTGTGTCCTGAAAAAGTAGGACTAAGATCTGCGTACTTAATAGTACCTTTTAGCATCTTATGTCTCTGTATCAAAATCTAATTTTGATGGGATCTACCATTTCAGTGAAAAATAGGGCACAATGAAAGAAAAATCTGTTAATGTGATAGCAATTAGTTGGATTTATAGTTTAGTCATGTTCTGTGTTTCTATTGGTTCTCTAATTTGTCAGAGAAGAAAATATAGAGAGCTTCTAGTATCTTTATTACTCATTGAGTCATTTCTAATTTTGTTTTGCTTAATGTTAGTTTGAGATGATCTTAAATGAAGGGACATGGTCAATGAGGATTCATATAGCTGAGCAAACTTATTGCGATTGTGTTGTAGCTGTTGTAGAAAAAATACGTATGAATTGACATCAAAAAAATTAGCTTGTTGGACTTTAACCATTTCAATAGCTAGTTCACAATGAAACAACAAGTCTTAGCAGATTGATTTCTCAAATGGAATTTATTTTTTTTGCTTTTAAAGTGTTCATGGTGGTGACTTATTGTCGTGGTGCAACTACAGTTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGAAAAGGCCCAAAAATTCGAAGATGTGAAGTGTGCACCAAAACTTGAAAATTCATTACATTAGGTTTTTGTTATTATTTTTATCATTCAAAATTTACTTGACTGACATTCCTGAACTATAGGTTACTCTATT</genome_strand>
        <mrna_strand>TTCTTCAAGGGAAAAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACACCTGCTGTAAAGGACTATGTGCAAGAGAAGTTGGGTAAGGCATTTCAAAAGCACAGCCATCTATCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGAAAAGGCCCAAAAATTCGAAGATGTGAA............................................................................................GTTACTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365648" ref_strand="+" ref_description="SGN-E365648 [cLPT-12-L8]">
      <seq>actgtgattctcctacaaagttccaatctttatcaagaacccacaaaattcatcaacccatttgaagtgttttactccttaaatcgataaattgactcaaaaatctccagttactactgttcctgcaatatacaacaatggcgactctttccctttccccttccgtgggaacaacttttcactctctccatagctacccaactggttcctcatcctattcttcttcttgtcccgctactgcttctccagctttgtcactgacattgtcatctaccaattcaggatttttaaattcagctttcaagatgaatgaagttaatgttcctgtcaggaatagggtgacaaaatcctttggggtccggatgtcttgggatggtcctctttcttctgttaaactcattcttcaagggaaaaatcttgagttaacacctgctgtaaaggactatgtggaagagaagttgggtaaggcagttcaaaagcacagccatctagccagggaagtggatgttaggctgtctgttcgaggtggagagcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31433" stop="29575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31133" g_stop="30712" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30711" i_stop="29992" i_length="720">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29991" g_stop="29875" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="539" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E365648" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31133" e_stop="30712"/>
          <exon e_start="29991" e_stop="29875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTGATTCTCCTACAAAGTTCCAATCTTTATCAAGAACCCACAAAATTCATCAACCCATTTGAAGTGTTTTACTCCTTAAATCGATAAATTGACTCAAAAATCTCCAGTTACTACTGTTCCTGCAATATACAACAATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAGGTCACACTCCTTAGGCCTTACAATATTATTATTTCCCTGCATTTTTTGCTTATATCTGCTAAAGTGTACTTCATAGGAACTTGGGTTTTCTGAAAAATAGTTAATTGATTTTGAATATACTCCTCTATCAAATGACTGCTCAGGTGCTATAAGGTCTATCAGAAACAACCTGTGTGTCCTGAAAAAGTAGGACTAAGATCTGCGTACTTAATAGTACCTTTTAGCATCTTATGTCTCTGTATCAAAATCTAATTTTGATGGGATCTACCATTTCAGTGAAAAATAGGGCACAATGAAAGAAAAATCTGTTAATGTGATAGCAATTAGTTGGATTTATAGTTTAGTCATGTTCTGTGTTTCTATTGGTTCTCTAATTTGTCAGAGAAGAAAATATAGAGAGCTTCTAGTATCTTTATTACTCATTGAGTCATTTCTAATTTTGTTTTGCTTAATGTTAGTTTGAGATGATCTTAAATGAAGGGACATGGTCAATGAGGATTCATATAGCTGAGCAAACTTATTGCGATTGTGTTGTAGCTGTTGTAGAAAAAATACGTATGAATTGACATCAAAAAAATTAGCTTGTTGGACTTTAACCATTTCAATAGCTAGTTCACAATGAAACAACAAGTCTTAGCAGATTGATTTCTCAAATGGAATTTATTTTTTTTGCTTTTAAAGTGTTCATGGTGGTGACTTATTGTCGTGGTGCAACTACAGTTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGA</genome_strand>
        <mrna_strand>ACTGTGATTCTCCTACAAAGTTCCAATCTTTATCAAGAACCCACAAAATTCATCAACCCATTTGAAGTGTTTTACTCCTTAAATCGATAAATTGACTCAAAAATCTCCAGTTACTACTGTTCCTGCAATATACAACAATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAACTGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCAGGATTTTTAAATTCAGCTTTCAAGATGAATGAAGTTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCTCTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202874" ref_strand="+" ref_description="SGN-E202874 [cLEB-1-F1]">
      <seq>gcacgaggcaaaggtcacgtgtcaaccatcatctcattttggataacgcatttcttcttcttcttcatcagtcccacactactgtaccgagcaacaaagcaactgtgattctcctacaaagttccaatctttatcaagaacccacaaaattcatcaacccatttgaagtgttttactccttaaatcgataaattgactcaaaaatctccagttactactgttcctgcaatatacaacaatggcgactctttccctttccccttccgtgggaacaacttttcactctctccatagctacccaaatggttcctcatcctattcttcttcttgtcccgctactgcttctccagctttgtcactgacattgtcatctaccaattcacgatttttaaattcagctttcaagatgaatgaaattaatgttcctgtcaggaatagggtgacaaaatcctttggggtccggatgtcttgggatggtccactttcttctgttaaactcattcttcaagggaaaaatcttgagttaacacctgctgtaaaggactatgtggaagagaagttgggtaaggcagttcaaaagcacagccatctagccagggaagtggatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31529" stop="29604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31234" g_stop="30712" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30711" i_stop="29992" i_length="720">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29991" g_stop="29904" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="611" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E202874" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31234" e_stop="30712"/>
          <exon e_start="29991" e_stop="29904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATGCAAAGGTCACGTGTCAACCATCATCTCATTTTGGATAACGCATTTCTTCTTCTTCTTCATCAGTCCCACACTACTGTACCGAGCAACAAAGCAACTGTGATTCTCCTACAAAGTTCCAATCTTTATCAAGAACCCACAAAATTCATCAACCCATTTGAAGTGTTTTACTCCTTAAATCGATAAATTGACTCAAAAATCTCCAGTTACTACTGTTCCTGCAATATACAACAATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAGGTCACACTCCTTAGGCCTTACAATATTATTATTTCCCTGCATTTTTTGCTTATATCTGCTAAAGTGTACTTCATAGGAACTTGGGTTTTCTGAAAAATAGTTAATTGATTTTGAATATACTCCTCTATCAAATGACTGCTCAGGTGCTATAAGGTCTATCAGAAACAACCTGTGTGTCCTGAAAAAGTAGGACTAAGATCTGCGTACTTAATAGTACCTTTTAGCATCTTATGTCTCTGTATCAAAATCTAATTTTGATGGGATCTACCATTTCAGTGAAAAATAGGGCACAATGAAAGAAAAATCTGTTAATGTGATAGCAATTAGTTGGATTTATAGTTTAGTCATGTTCTGTGTTTCTATTGGTTCTCTAATTTGTCAGAGAAGAAAATATAGAGAGCTTCTAGTATCTTTATTACTCATTGAGTCATTTCTAATTTTGTTTTGCTTAATGTTAGTTTGAGATGATCTTAAATGAAGGGACATGGTCAATGAGGATTCATATAGCTGAGCAAACTTATTGCGATTGTGTTGTAGCTGTTGTAGAAAAAATACGTATGAATTGACATCAAAAAAATTAGCTTGTTGGACTTTAACCATTTCAATAGCTAGTTCACAATGAAACAACAAGTCTTAGCAGATTGATTTCTCAAATGGAATTTATTTTTTTTGCTTTTAAAGTGTTCATGGTGGTGACTTATTGTCGTGGTGCAACTACAGTTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTA</genome_strand>
        <mrna_strand>GCACGAGGCAAAGGTCACGTGTCAACCATCATCTCATTTTGGATAACGCATTTCTTCTTCTTCTTCATCAGTCCCACACTACTGTACCGAGCAACAAAGCAACTGTGATTCTCCTACAAAGTTCCAATCTTTATCAAGAACCCACAAAATTCATCAACCCATTTGAAGTGTTTTACTCCTTAAATCGATAAATTGACTCAAAAATCTCCAGTTACTACTGTTCCTGCAATATACAACAATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367009" ref_strand="+" ref_description="SGN-E367009 [cLPT-6-L3]">
      <seq>tgattctcctacaaagttccaatctttatcaagaacccacaaaattcatcaacccatttgaagtgttttactccttaaatcgataaattgactcaaaaatctccagttactactgttcctgcaatatacaacaatggcgactctttccctttccccttccgtgggaacaacttttcactctctccatagctacccaactggttcctcatcctattcttcttcttgtcccgctactgcttctccagctttgtcactgacattgtcatctaccaattcaggatttttaaattcagctttcaagatgaatgaagttaatgttcctgtcaggaatagggtgacaaaatcctttggggtccggatgtcttgggatggtcctctttcttctgttaaactcattcttcaagggaaaaatcttgagttaacacctgctgtaaaggactatgtggaagagaagttgggtaaggcagttcaaaagcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31429" stop="29631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31129" g_stop="30712" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30711" i_stop="29992" i_length="720">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29991" g_stop="29931" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="479" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E367009" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31129" e_stop="30712"/>
          <exon e_start="29991" e_stop="29931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTCTCCTACAAAGTTCCAATCTTTATCAAGAACCCACAAAATTCATCAACCCATTTGAAGTGTTTTACTCCTTAAATCGATAAATTGACTCAAAAATCTCCAGTTACTACTGTTCCTGCAATATACAACAATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAGGTCACACTCCTTAGGCCTTACAATATTATTATTTCCCTGCATTTTTTGCTTATATCTGCTAAAGTGTACTTCATAGGAACTTGGGTTTTCTGAAAAATAGTTAATTGATTTTGAATATACTCCTCTATCAAATGACTGCTCAGGTGCTATAAGGTCTATCAGAAACAACCTGTGTGTCCTGAAAAAGTAGGACTAAGATCTGCGTACTTAATAGTACCTTTTAGCATCTTATGTCTCTGTATCAAAATCTAATTTTGATGGGATCTACCATTTCAGTGAAAAATAGGGCACAATGAAAGAAAAATCTGTTAATGTGATAGCAATTAGTTGGATTTATAGTTTAGTCATGTTCTGTGTTTCTATTGGTTCTCTAATTTGTCAGAGAAGAAAATATAGAGAGCTTCTAGTATCTTTATTACTCATTGAGTCATTTCTAATTTTGTTTTGCTTAATGTTAGTTTGAGATGATCTTAAATGAAGGGACATGGTCAATGAGGATTCATATAGCTGAGCAAACTTATTGCGATTGTGTTGTAGCTGTTGTAGAAAAAATACGTATGAATTGACATCAAAAAAATTAGCTTGTTGGACTTTAACCATTTCAATAGCTAGTTCACAATGAAACAACAAGTCTTAGCAGATTGATTTCTCAAATGGAATTTATTTTTTTTGCTTTTAAAGTGTTCATGGTGGTGACTTATTGTCGTGGTGCAACTACAGTTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACA</genome_strand>
        <mrna_strand>TGATTCTCCTACAAAGTTCCAATCTTTATCAAGAACCCACAAAATTCATCAACCCATTTGAAGTGTTTTACTCCTTAAATCGATAAATTGACTCAAAAATCTCCAGTTACTACTGTTCCTGCAATATACAACAATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAACTGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCAGGATTTTTAAATTCAGCTTTCAAGATGAATGAAGTTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCTCTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266836" ref_strand="+" ref_description="SGN-E266836 [cLEI-7-N1]">
      <seq>taccgagcaacaaagcaactgtgattctcctacaaagttccaatctttatcaagaacccacaaaattcatcaacccatttgaagtgttttactccttaaatcgataaattgactcaaaaatctccagttactactgttcctgcaatatacaacaatggcgactctttccctttccccttccgtgggaacaacttttcactctctccatagctacccaaatggttcctcatcctattcttcttcttgtcccgctactgcttctccagctttgtcactgacattgtcatctaccaattcacgatttttaaattcagctttcaagatgaatgaaattaatgttcctgtcaggaatagggtgacaaaatcctttggggtccggatgtcttgggatggtccactttcttctgttaaactcattcttcaagggaaaaatcttgagttaacacctgctgtaaaggactatgtggaagagaagttgggtaaggcagttcaaaagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31450" stop="29632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31150" g_stop="30712" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30711" i_stop="29992" i_length="720">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29991" g_stop="29932" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="499" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E266836" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31150" e_stop="30712"/>
          <exon e_start="29991" e_stop="29932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCGAGCAACAAAGCAACTGTGATTCTCCTACAAAGTTCCAATCTTTATCAAGAACCCACAAAATTCATCAACCCATTTGAAGTGTTTTACTCCTTAAATCGATAAATTGACTCAAAAATCTCCAGTTACTACTGTTCCTGCAATATACAACAATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAGGTCACACTCCTTAGGCCTTACAATATTATTATTTCCCTGCATTTTTTGCTTATATCTGCTAAAGTGTACTTCATAGGAACTTGGGTTTTCTGAAAAATAGTTAATTGATTTTGAATATACTCCTCTATCAAATGACTGCTCAGGTGCTATAAGGTCTATCAGAAACAACCTGTGTGTCCTGAAAAAGTAGGACTAAGATCTGCGTACTTAATAGTACCTTTTAGCATCTTATGTCTCTGTATCAAAATCTAATTTTGATGGGATCTACCATTTCAGTGAAAAATAGGGCACAATGAAAGAAAAATCTGTTAATGTGATAGCAATTAGTTGGATTTATAGTTTAGTCATGTTCTGTGTTTCTATTGGTTCTCTAATTTGTCAGAGAAGAAAATATAGAGAGCTTCTAGTATCTTTATTACTCATTGAGTCATTTCTAATTTTGTTTTGCTTAATGTTAGTTTGAGATGATCTTAAATGAAGGGACATGGTCAATGAGGATTCATATAGCTGAGCAAACTTATTGCGATTGTGTTGTAGCTGTTGTAGAAAAAATACGTATGAATTGACATCAAAAAAATTAGCTTGTTGGACTTTAACCATTTCAATAGCTAGTTCACAATGAAACAACAAGTCTTAGCAGATTGATTTCTCAAATGGAATTTATTTTTTTTGCTTTTAAAGTGTTCATGGTGGTGACTTATTGTCGTGGTGCAACTACAGTTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCAC</genome_strand>
        <mrna_strand>TACCGAGCAACAAAGCAACTGTGATTCTCCTACAAAGTTCCAATCTTTATCAAGAACCCACAAAATTCATCAACCCATTTGAAGTGTTTTACTCCTTAAATCGATAAATTGACTCAAAAATCTCCAGTTACTACTGTTCCTGCAATATACAACAATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736115" ref_strand="+" ref_description="SGN-E736115 [LC04BF08]">
      <seq>cttcttcttgtcccgctactgcttctccagctttgtcactgacattgtcatctaccaattcacgatttttaaattcagctttcaagatgaatgaaattaatgttcctgtcaggaatagggtgacaaaatcctttggggtccggatgtcttgggatggtccactttcttctgttaaactcattcttcaagggaaaaatcttgaggtcacactccttaggccttacaatattattatttccctgcattttttgcttatatctgctaaagtgtacttcataggaacttgggttttctgaaaaatagttaattgattttgaatatactcctctatcaaatgactgctcaggtgctataaggtctatcagaaacaacctgtgtgtcctgaaaaagtaggactaagatctgcgtacttaatagtaccttttagcatcttatgtctctgtatcaaaatctaattttgatgggatctaccatttcagtgaaaaatagggcacaatgaaagaaaaatctgttaatgtgatagcaattagttggatttatagtttagtcatgttctgtgtttctattggttctctaatttgtcagagaagaaaatatagagagcttctagtatctttattactcattgagtcatttctaattttgttttgcttaatgttagtttgagatgatcttaaatgaagggacatggtcaatgaggattcatatagctgagcaaacttattgcgattgtgttgtagctgttgtagaaaaaatacgtatgaattgacatcaaaaaaattagcttgttggactttaaccatttcaatagctagttcacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31214" stop="29791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30914" g_stop="30091" g_length="824"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="824" r_length="824" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E736115" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30914" e_stop="30091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAGGTCACACTCCTTAGGCCTTACAATATTATTATTTCCCTGCATTTTTTGCTTATATCTGCTAAAGTGTACTTCATAGGAACTTGGGTTTTCTGAAAAATAGTTAATTGATTTTGAATATACTCCTCTATCAAATGACTGCTCAGGTGCTATAAGGTCTATCAGAAACAACCTGTGTGTCCTGAAAAAGTAGGACTAAGATCTGCGTACTTAATAGTACCTTTTAGCATCTTATGTCTCTGTATCAAAATCTAATTTTGATGGGATCTACCATTTCAGTGAAAAATAGGGCACAATGAAAGAAAAATCTGTTAATGTGATAGCAATTAGTTGGATTTATAGTTTAGTCATGTTCTGTGTTTCTATTGGTTCTCTAATTTGTCAGAGAAGAAAATATAGAGAGCTTCTAGTATCTTTATTACTCATTGAGTCATTTCTAATTTTGTTTTGCTTAATGTTAGTTTGAGATGATCTTAAATGAAGGGACATGGTCAATGAGGATTCATATAGCTGAGCAAACTTATTGCGATTGTGTTGTAGCTGTTGTAGAAAAAATACGTATGAATTGACATCAAAAAAATTAGCTTGTTGGACTTTAACCATTTCAATAGCTAGTTCACAATG</genome_strand>
        <mrna_strand>CTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAGGTCACACTCCTTAGGCCTTACAATATTATTATTTCCCTGCATTTTTTGCTTATATCTGCTAAAGTGTACTTCATAGGAACTTGGGTTTTCTGAAAAATAGTTAATTGATTTTGAATATACTCCTCTATCAAATGACTGCTCAGGTGCTATAAGGTCTATCAGAAACAACCTGTGTGTCCTGAAAAAGTAGGACTAAGATCTGCGTACTTAATAGTACCTTTTAGCATCTTATGTCTCTGTATCAAAATCTAATTTTGATGGGATCTACCATTTCAGTGAAAAATAGGGCACAATGAAAGAAAAATCTGTTAATGTGATAGCAATTAGTTGGATTTATAGTTTAGTCATGTTCTGTGTTTCTATTGGTTCTCTAATTTGTCAGAGAAGAAAATATAGAGAGCTTCTAGTATCTTTATTACTCATTGAGTCATTTCTAATTTTGTTTTGCTTAATGTTAGTTTGAGATGATCTTAAATGAAGGGACATGGTCAATGAGGATTCATATAGCTGAGCAAACTTATTGCGATTGTGTTGTAGCTGTTGTAGAAAAAATACGTATGAATTGACATCAAAAAAATTAGCTTGTTGGACTTTAACCATTTCAATAGCTAGTTCACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293898" ref_strand="+" ref_description="SGN-E293898 [cLET-13-O13]">
      <seq>caactgtgattctcctacaaagttccaatctttatcaagaacccacaaaattcatcaacccatttgaagtgttttactccttaaatcgataaattgactcaaaaatctccagttactactgttcctgcaatatacaacaatggcgactctttccctttccccttccgtgggaacaacttttcactctctccatagctacccaaaaggttgctcatcctattcttcttcttgtcccgctactgcttctccagctttgtcactgacattgtcatctaccaattcacgatttttaaattcagctttcaagatgaatgaaattaatgttcctgtcaggaatagggtgacaaaatcctttggggtccggatgtcttgggatggtccactttcttctgttaaactcattcttcaagggaaaaatcttgagttaacacctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31435" stop="30401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31135" g_stop="30712" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E293898" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31135" e_stop="30712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTGTGATTCTCCTACAAAGTTCCAATCTTTATCAAGAACCCACAAAATTCATCAACCCATTTGAAGTGTTTTACTCCTTAAATCGATAAATTGACTCAAAAATCTCCAGTTACTACTGTTCCTGCAATATACAACAATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAG</genome_strand>
        <mrna_strand>CAACTGTGATTCTCCTACAAAGTTCCAATCTTTATCAAGAACCCACAAAATTCATCAACCCATTTGAAGTGTTTTACTCCTTAAATCGATAAATTGACTCAAAAATCTCCAGTTACTACTGTTCCTGCAATATACAACAATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAAAGGTTGCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699219" ref_strand="+" ref_description="SGN-E699219 [FA09AF08]">
      <seq>tactccttaaatccataaattgactcaaaaatctccagttactactgttcctgcaatatacaacaatggcgactctttccctttccccttccgtgggaacaacttttcactctctccatagctacccaaatggttcctcatcctattcttcttcttgtcccgctactgcttctccagctttgtcactgacattgtcatctaccaattcacgatttttaaattcagctttcaagatgaatgaaattaatgttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31361" stop="30509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31061" g_stop="30809" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E699219" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31061" e_stop="30809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCCTTAAATCGATAAATTGACTCAAAAATCTCCAGTTACTACTGTTCCTGCAATATACAACAATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCC</genome_strand>
        <mrna_strand>TACTCCTTAAATCCATAAATTGACTCAAAAATCTCCAGTTACTACTGTTCCTGCAATATACAACAATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281397" ref_strand="+" ref_description="SGN-E281397 [cLEL-1-A11](-)">
      <seq>acaagaagaagaataggatgaggaaccatttgggtagctatggagagagtgaaaagttgttcccacggaaggggaaagggaaagagtcgccattgttgtatattgcaggaacagtagtaactggagatttttgagtcaatttatcgatttaaggagtaaaacacttcaaatgggttgatgaattttgtgggttcttgataaagattggaactttgtaggagaatcacagttgctttgttgctcggtacagtagtgtgggactgatgccgaagaagaagaaatgcgttatccaaaataagatgatggttgacacgtgacctttgcctcgtgccgaattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30604" stop="31529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30904" g_stop="31227" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E281397" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30904" e_stop="31227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAAGAAGAATAGGATGAGGAACCATTTGGGTAGCTATGGAGAGAGTGAAAAGTTGTTCCCACGGAAGGGGAAAGGGAAAGAGTCGCCATTGTTGTATATTGCAGGAACAGTAGTAACTGGAGATTTTTGAGTCAATTTATCGATTTAAGGAGTAAAACACTTCAAATGGGTTGATGAATTTTGTGGGTTCTTGATAAAGATTGGAACTTTGTAGGAGAATCACAGTTGCTTTGTTGCTCGGTACAGTAGTGTGGGACTGATGAAGAAGAAGAAGAAATGCGTTATCCAAAATGAGATGATGGTTGACACGTGACCTTTGC</genome_strand>
        <mrna_strand>ACAAGAAGAAGAATAGGATGAGGAACCATTTGGGTAGCTATGGAGAGAGTGAAAAGTTGTTCCCACGGAAGGGGAAAGGGAAAGAGTCGCCATTGTTGTATATTGCAGGAACAGTAGTAACTGGAGATTTTTGAGTCAATTTATCGATTTAAGGAGTAAAACACTTCAAATGGGTTGATGAATTTTGTGGGTTCTTGATAAAGATTGGAACTTTGTAGGAGAATCACAGTTGCTTTGTTGCTCGGTACAGTAGTGTGGGACTGATGCCGAAGAAGAAGAAATGCGTTATCCAAAATAAGATGATGGTTGACACGTGACCTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34923" stop="33516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34623" g_stop="33816" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34623" e_stop="33816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGTTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAAGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGACGCTCGGAAGATTTTAGGGATAGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGTTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTACATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35582" stop="34334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35282" g_stop="34634" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35282" e_stop="34634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGAGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGTATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAAGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35581" stop="34597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35281" g_stop="34897" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35281" e_stop="34897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGAGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300389" ref_strand="+" ref_description="SGN-E300389 [cLET-45-I5]">
      <seq>aaaaaaaaagagaggtggaatggctggttctgctactgctcatggcttcccaactagcttcttgctttctcctcgcagcacgggacactttacttatttgctatcatcactacaaattaaacctaaaagtagcaatttcaacttgctcaacacttgccctttatcgcatttatgttcatcctcggctaatggatctatcacggatgataattttttccaacaaaacaaaaacttagatagccaagagagcaaagggttttggaagaaatggaaggagaactcagcggaaatgagtgcgaaggtagcaaagctagggcttgcggcagttcttgcttatggcattattgatggtgtcacatacactagtttctttgtgcttgcatttatgggctatgagaagaccaccggcaataatcctgctgcaaatctccaatctttgttggggattataatcgcaatgtggacgggaaataatgtgaccaggccatttagggttgcaggagcagctgctctggcacctgccattgacaagggactaaagagaatacagagatacttaaactttccaagtcttgtatatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39087" stop="41081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39387" g_stop="39624" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39625" i_stop="39716" i_length="92">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39717" g_stop="39752" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="274" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39753" i_stop="39821" i_length="69">
            <donor d_prob="0.806" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39822" g_stop="39992" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="445" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39993" i_stop="40642" i_length="650">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40643" g_stop="40781" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="584" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E300389" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39387" e_stop="39624"/>
          <exon e_start="39717" e_stop="39752"/>
          <exon e_start="39822" e_stop="39992"/>
          <exon e_start="40643" e_stop="40781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAGAGAGGTGGAATGGCTGGTTCTGCTACTGCTCATGGCTTCCCAACTAGCTTCTTGCTTTCTCCTCGCAGCACGGGACACTTTACTTATTTGCTATCATCACTACAAATTAAACCTAAAAGTAGCAATTTCAACTTGCTCAACACTTGCCCTTTATCGCATTTATGTTCATCCTCGGCTAATGGATCTATCACGGATGATAATTTTTTCCAACAAAACAAAAACTTAGATGTCAGTCTCTCTCTCTCTCACACACATATATTGCGTTCTTCTATTGATTTTTTGATTAATATTTTTTTGTTTCCTTTTCTGTGTGGGATAAGAGCCAAGAGAGCAAAGGGTTTTGGAAGAAATGGAAGGTTTGGTAAACCCATTATTTTTTTTAGGATGATTTGGTGAAAACTGCTTTGACGTTGTGTTTTAATCAGGAGAACTCAGCGGAAATGAGTGCGAAGGTAGCAAAGCTAGGGCTTGCGGCAGTTCTTGCTTATGGCATTATTGATGGTGTCACATACACTAGTTTCTTTGTGCTTGCATTTATGGGCTATGAGAAGACCACCGGCAATAATCCTGCTGCAAATCTCCAATCTTTGTTGGGGGTAAGTAGTAATTCTTAAATAGGTATGAAATATGCAATTGATAAAAGGGGGGAATGGTTTTTGCTTTGATTTAGAGAAATAGAGACTTGATTTCCTAGAATTACTTCTCTTTTGAGCCAAGGGTCCTCTCTACCTCCACAACGATAGGAGTAAGGTAAGGTTCGCATACATCTTACTCTCCCCAAACCTAACTTGCGTTGTTGTAGACTTGATTTCCTGAACTTTTTAGTGCAAAGGTAAAAGGTACCATATTATGGAAATATGTGGTATTTACATTTAGGATACTGGATGAATGCTTATCATAGCATTTTCATTTGTCGTAGAATATCCACTTCAGTATTTACATACCGAAGTTGTCTTTTCCATTTCTTCAGATCAAAGTTAAGACCATCTTTTCCTTTTCACCATATCGTGAGTTCCTTTATCTTAGATCTAATTTAATGTCATTCTTCTCCTCTTTACCAGAAAGAGCATCCAGAGTTAACAATAATACTAATGAGAATCATTTAGCAACTATAGGGAACTCGGAATTTTCATGGTGCCTCGTGTCAATCTGCACCTTACTTCCCCATTGGACATGTGCTATTTTAATTGAGCACTTTTGTATTTTCATTTCTCCTTTGCTCAAAAAGCACTCTTCATAACGGCAGATTATAATCGCAATGTGGACGGGAAATAATGTGACCAGGCCATTTAGGGTTGCAGGAGCAGCTGCTCTGGCACCTGCCATTGACAAGGGACTAAAGAGAATACAGAGATACTTAAACTTTCCAAGTCTTGTATATGCTT</genome_strand>
        <mrna_strand>AAAAAAAAAGAGAGGTGGAATGGCTGGTTCTGCTACTGCTCATGGCTTCCCAACTAGCTTCTTGCTTTCTCCTCGCAGCACGGGACACTTTACTTATTTGCTATCATCACTACAAATTAAACCTAAAAGTAGCAATTTCAACTTGCTCAACACTTGCCCTTTATCGCATTTATGTTCATCCTCGGCTAATGGATCTATCACGGATGATAATTTTTTCCAACAAAACAAAAACTTAGAT............................................................................................AGCCAAGAGAGCAAAGGGTTTTGGAAGAAATGGAAG.....................................................................GAGAACTCAGCGGAAATGAGTGCGAAGGTAGCAAAGCTAGGGCTTGCGGCAGTTCTTGCTTATGGCATTATTGATGGTGTCACATACACTAGTTTCTTTGTGCTTGCATTTATGGGCTATGAGAAGACCACCGGCAATAATCCTGCTGCAAATCTCCAATCTTTGTTGGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATAATCGCAATGTGGACGGGAAATAATGTGACCAGGCCATTTAGGGTTGCAGGAGCAGCTGCTCTGGCACCTGCCATTGACAAGGGACTAAAGAGAATACAGAGATACTTAAACTTTCCAAGTCTTGTATATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374271" ref_strand="+" ref_description="SGN-E374271 [TUS-33-D22]">
      <seq>aaaaaaaaagagaggtggaatggctggttctgctactgctcatggcttcccaactagcttcttgctttctcctcgcagcacgggacactttacttatttgctatcatcactacaaattaaacctaaaagtagcaatttcaacttgctcaacacttgccctttatcgcatttatgttcatcctcggctaatggatctatcacggatgataattttttccaacaaaacaaaaacttagatagccaagagagcaaagggttttggaagaaatggaaggagaactcagcggaaatgagtgcgaaggtagcaaagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39087" stop="40160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39387" g_stop="39624" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39625" i_stop="39716" i_length="92">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39717" g_stop="39752" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="274" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39753" i_stop="39821" i_length="69">
            <donor d_prob="0.806" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39822" g_stop="39860" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="313" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E374271" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39387" e_stop="39624"/>
          <exon e_start="39717" e_stop="39752"/>
          <exon e_start="39822" e_stop="39860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAGAGAGGTGGAATGGCTGGTTCTGCTACTGCTCATGGCTTCCCAACTAGCTTCTTGCTTTCTCCTCGCAGCACGGGACACTTTACTTATTTGCTATCATCACTACAAATTAAACCTAAAAGTAGCAATTTCAACTTGCTCAACACTTGCCCTTTATCGCATTTATGTTCATCCTCGGCTAATGGATCTATCACGGATGATAATTTTTTCCAACAAAACAAAAACTTAGATGTCAGTCTCTCTCTCTCTCACACACATATATTGCGTTCTTCTATTGATTTTTTGATTAATATTTTTTTGTTTCCTTTTCTGTGTGGGATAAGAGCCAAGAGAGCAAAGGGTTTTGGAAGAAATGGAAGGTTTGGTAAACCCATTATTTTTTTTAGGATGATTTGGTGAAAACTGCTTTGACGTTGTGTTTTAATCAGGAGAACTCAGCGGAAATGAGTGCGAAGGTAGCAAAGCTA</genome_strand>
        <mrna_strand>AAAAAAAAAGAGAGGTGGAATGGCTGGTTCTGCTACTGCTCATGGCTTCCCAACTAGCTTCTTGCTTTCTCCTCGCAGCACGGGACACTTTACTTATTTGCTATCATCACTACAAATTAAACCTAAAAGTAGCAATTTCAACTTGCTCAACACTTGCCCTTTATCGCATTTATGTTCATCCTCGGCTAATGGATCTATCACGGATGATAATTTTTTCCAACAAAACAAAAACTTAGAT............................................................................................AGCCAAGAGAGCAAAGGGTTTTGGAAGAAATGGAAG.....................................................................GAGAACTCAGCGGAAATGAGTGCGAAGGTAGCAAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276290" ref_strand="+" ref_description="SGN-E276290 [cLEN-21-K8]">
      <seq>ggaatggctggttctgctactgctcatggcttcccaactagcttcttgctttctcctcgcagcacgggacactttacttatttgctatcatcactacaaattaaacctaaaagtagcaatttcaacttgctcaacacttgccctttatcgcatttatgttcatcctcggctaatggatctatcacggatgataattttttccaacaaaacaaaaacttagatagccaagagagcaaagggttttggaagaaatggaaggagaactcagcggaaatgagtgcgaaggtagcaaagctagggcttgcggcagttcttgcttatggcattattgatggtgtcacatacactagtttctttgtgcttgcatttatgggctatgagaagaccaccggcaataatcctgctgcaaatctccaatctttgttgggggtaagtagtaattcttaaataggtatgaaatatgcaattgataaaaggggggaatggtttttgctttgatttagagaaatagagacttgatttcctagaattacttctcttttgagccaagggtcctctctacctccacaacgataggagtaaggtaaggttcgcatacatcttactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39103" stop="40470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39403" g_stop="39624" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39625" i_stop="39716" i_length="92">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39717" g_stop="39752" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="258" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39753" i_stop="39821" i_length="69">
            <donor d_prob="0.806" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39822" g_stop="40170" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="607" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E276290" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39403" e_stop="39624"/>
          <exon e_start="39717" e_stop="39752"/>
          <exon e_start="39822" e_stop="40170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATGGCTGGTTCTGCTACTGCTCATGGCTTCCCAACTAGCTTCTTGCTTTCTCCTCGCAGCACGGGACACTTTACTTATTTGCTATCATCACTACAAATTAAACCTAAAAGTAGCAATTTCAACTTGCTCAACACTTGCCCTTTATCGCATTTATGTTCATCCTCGGCTAATGGATCTATCACGGATGATAATTTTTTCCAACAAAACAAAAACTTAGATGTCAGTCTCTCTCTCTCTCACACACATATATTGCGTTCTTCTATTGATTTTTTGATTAATATTTTTTTGTTTCCTTTTCTGTGTGGGATAAGAGCCAAGAGAGCAAAGGGTTTTGGAAGAAATGGAAGGTTTGGTAAACCCATTATTTTTTTTAGGATGATTTGGTGAAAACTGCTTTGACGTTGTGTTTTAATCAGGAGAACTCAGCGGAAATGAGTGCGAAGGTAGCAAAGCTAGGGCTTGCGGCAGTTCTTGCTTATGGCATTATTGATGGTGTCACATACACTAGTTTCTTTGTGCTTGCATTTATGGGCTATGAGAAGACCACCGGCAATAATCCTGCTGCAAATCTCCAATCTTTGTTGGGGGTAAGTAGTAATTCTTAAATAGGTATGAAATATGCAATTGATAAAAGGGGGGAATGGTTTTTGCTTTGATTTAGAGAAATAGAGACTTGATTTCCTAGAATTACTTCTCTTTTGAGCCAAGGGTCCTCTCTACCTCCACAACGATAGGAGTAAGGTAAGGTTCGCATACATCTTACTC</genome_strand>
        <mrna_strand>GGAATGGCTGGTTCTGCTACTGCTCATGGCTTCCCAACTAGCTTCTTGCTTTCTCCTCGCAGCACGGGACACTTTACTTATTTGCTATCATCACTACAAATTAAACCTAAAAGTAGCAATTTCAACTTGCTCAACACTTGCCCTTTATCGCATTTATGTTCATCCTCGGCTAATGGATCTATCACGGATGATAATTTTTTCCAACAAAACAAAAACTTAGAT............................................................................................AGCCAAGAGAGCAAAGGGTTTTGGAAGAAATGGAAG.....................................................................GAGAACTCAGCGGAAATGAGTGCGAAGGTAGCAAAGCTAGGGCTTGCGGCAGTTCTTGCTTATGGCATTATTGATGGTGTCACATACACTAGTTTCTTTGTGCTTGCATTTATGGGCTATGAGAAGACCACCGGCAATAATCCTGCTGCAAATCTCCAATCTTTGTTGGGGGTAAGTAGTAATTCTTAAATAGGTATGAAATATGCAATTGATAAAAGGGGGGAATGGTTTTTGCTTTGATTTAGAGAAATAGAGACTTGATTTCCTAGAATTACTTCTCTTTTGAGCCAAGGGTCCTCTCTACCTCCACAACGATAGGAGTAAGGTAAGGTTCGCATACATCTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374270" ref_strand="+" ref_description="SGN-E374270 [TUS-33-D22](-)">
      <seq>cagcacgggacactttacttatttgctatcatcactacaaattaaacctaaaagtagcaatttcaacttgctcaacacttgccctttatcgcatttatgttcatcctcggctaatggatctatcacggatgataattttttccaacaaaacaaaaacttagatagccaagagagcaaagggttttggaagaaatggaaggagaactcagcggaaatgagtgcgaaggtagcaaagctagggcttgcggcagttcttgcttatggcattattgatggtgtcacatacactagtttctttgtgcttgcatttatgggctatgagaagaccaccggcaataatcctgctgcaaatctccaatctttgttggggattataatcgcaatgtggacgggaaataatgtgaccaggccatttagggttgcaggagcagctgctctggcacctgccattgacaagggactaaagagaatacagagatacttaaactttccaagtcttgtatatgcttttgctttagtggtgactatagttgctgggacatgtttcaccattattggtttactcatcctttcaagatggggaaagtgaacgattccacccataagttagctggatatttgttgtaatctgttgagtgttacttgtatcattgagatagtcctctgactatatatttttccacttatatggtctcgtaaaagtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39162" stop="41276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39462" g_stop="39624" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39625" i_stop="39716" i_length="92">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39717" g_stop="39752" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="199" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39753" i_stop="39821" i_length="69">
            <donor d_prob="0.806" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39822" g_stop="39992" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="370" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39993" i_stop="40642" i_length="650">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40643" g_stop="40976" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="704" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="705" polyA_stop="719"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E374270" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39462" e_stop="39624"/>
          <exon e_start="39717" e_stop="39752"/>
          <exon e_start="39822" e_stop="39992"/>
          <exon e_start="40643" e_stop="40976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCACGGGACACTTTACTTATTTGCTATCATCACTACAAATTAAACCTAAAAGTAGCAATTTCAACTTGCTCAACACTTGCCCTTTATCGCATTTATGTTCATCCTCGGCTAATGGATCTATCACGGATGATAATTTTTTCCAACAAAACAAAAACTTAGATGTCAGTCTCTCTCTCTCTCACACACATATATTGCGTTCTTCTATTGATTTTTTGATTAATATTTTTTTGTTTCCTTTTCTGTGTGGGATAAGAGCCAAGAGAGCAAAGGGTTTTGGAAGAAATGGAAGGTTTGGTAAACCCATTATTTTTTTTAGGATGATTTGGTGAAAACTGCTTTGACGTTGTGTTTTAATCAGGAGAACTCAGCGGAAATGAGTGCGAAGGTAGCAAAGCTAGGGCTTGCGGCAGTTCTTGCTTATGGCATTATTGATGGTGTCACATACACTAGTTTCTTTGTGCTTGCATTTATGGGCTATGAGAAGACCACCGGCAATAATCCTGCTGCAAATCTCCAATCTTTGTTGGGGGTAAGTAGTAATTCTTAAATAGGTATGAAATATGCAATTGATAAAAGGGGGGAATGGTTTTTGCTTTGATTTAGAGAAATAGAGACTTGATTTCCTAGAATTACTTCTCTTTTGAGCCAAGGGTCCTCTCTACCTCCACAACGATAGGAGTAAGGTAAGGTTCGCATACATCTTACTCTCCCCAAACCTAACTTGCGTTGTTGTAGACTTGATTTCCTGAACTTTTTAGTGCAAAGGTAAAAGGTACCATATTATGGAAATATGTGGTATTTACATTTAGGATACTGGATGAATGCTTATCATAGCATTTTCATTTGTCGTAGAATATCCACTTCAGTATTTACATACCGAAGTTGTCTTTTCCATTTCTTCAGATCAAAGTTAAGACCATCTTTTCCTTTTCACCATATCGTGAGTTCCTTTATCTTAGATCTAATTTAATGTCATTCTTCTCCTCTTTACCAGAAAGAGCATCCAGAGTTAACAATAATACTAATGAGAATCATTTAGCAACTATAGGGAACTCGGAATTTTCATGGTGCCTCGTGTCAATCTGCACCTTACTTCCCCATTGGACATGTGCTATTTTAATTGAGCACTTTTGTATTTTCATTTCTCCTTTGCTCAAAAAGCACTCTTCATAACGGCAGATTATAATCGCAATGTGGACGGGAAATAATGTGACCAGGCCATTTAGGGTTGCAGGAGCAGCTGCTCTGGCACCTGCCATTGACAAGGGACTAAAGAGAATACAGAGATACTTAAACTTTCCAAGTCTTGTATATGCTTTTGCTTTAGTGGTGACTATAGTTGCTGGGACATGTTTCACCATTATTGGTTTACTCATCCTTTCAAGATGGGGAAAGTGAACGATTCCACCCATAAGTTAGCTGGATATTTGTTGTAATCTGTTGAGTGTTACTTGTATCATTGAGATAGTCCTCTGACTATATATTTTTCCACTTATATGGTCTCGTAAAAGTA</genome_strand>
        <mrna_strand>CAGCACGGGACACTTTACTTATTTGCTATCATCACTACAAATTAAACCTAAAAGTAGCAATTTCAACTTGCTCAACACTTGCCCTTTATCGCATTTATGTTCATCCTCGGCTAATGGATCTATCACGGATGATAATTTTTTCCAACAAAACAAAAACTTAGAT............................................................................................AGCCAAGAGAGCAAAGGGTTTTGGAAGAAATGGAAG.....................................................................GAGAACTCAGCGGAAATGAGTGCGAAGGTAGCAAAGCTAGGGCTTGCGGCAGTTCTTGCTTATGGCATTATTGATGGTGTCACATACACTAGTTTCTTTGTGCTTGCATTTATGGGCTATGAGAAGACCACCGGCAATAATCCTGCTGCAAATCTCCAATCTTTGTTGGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATAATCGCAATGTGGACGGGAAATAATGTGACCAGGCCATTTAGGGTTGCAGGAGCAGCTGCTCTGGCACCTGCCATTGACAAGGGACTAAAGAGAATACAGAGATACTTAAACTTTCCAAGTCTTGTATATGCTTTTGCTTTAGTGGTGACTATAGTTGCTGGGACATGTTTCACCATTATTGGTTTACTCATCCTTTCAAGATGGGGAAAGTGAACGATTCCACCCATAAGTTAGCTGGATATTTGTTGTAATCTGTTGAGTGTTACTTGTATCATTGAGATAGTCCTCTGACTATATATTTTTCCACTTATATGGTCTCGTAAAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738189" ref_strand="+" ref_description="SGN-E738189 [LC12CG12]">
      <seq>cgatcaagagagcaaagggttttggaagaaatggaaggtttggtaaacccattattttttttaggatgatttggtgaaaactgctttgacgttgtgttttaatcaggagaactcagcggaaatgagtgcgaaggtagcaaagctagggcttgcggcagttcttgcttatggcattattgatggtgtcacatacactagtttctttgtgcttgcatttatgggctatgagaagaccaccggcaataatcctgctgcaaatctccaatctttgttgggggtaagtagtaattcttaaataggtatgaaatatgcaattgataaaaggggggaatggtttttgctttgatttagagaaatagagacttgatttcctagaattacttctcttttgagccaagggtcctctctacctccacaacgataggagtaaggtaaggttcgcatacatcttactctccccaaacctaacttgcgttgttgtagacttgatttcctgaactttttagtgcaaaggtaaaaggtaccatattatggaaatatgtggtatttacatttaggatactggatgaatgcttatcatagcattttcatttgtcgtagaatatccacttcagtatttacataccgaagttgtcttttccatttcttcagatcaaagttaagaccatcttttccttttcaccatatcgtgagttcctttatcttagatctaatttaatgtcattcttctcctctttaccagaaagagcatccagagttaacaataatactaatgagaatcatttagcaactataggggaactcggaattttcatggtgcctcgtgtcaatctgcaccctacttccccattggacatgtgctattttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39420" stop="40884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39717" g_stop="40584" g_length="868"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="870" r_length="868" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E738189" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39717" e_stop="40584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCAAGAGAGCAAAGGGTTTTGGAAGAAATGGAAGGTTTGGTAAACCCATTATTTTTTTTAGGATGATTTGGTGAAAACTGCTTTGACGTTGTGTTTTAATCAGGAGAACTCAGCGGAAATGAGTGCGAAGGTAGCAAAGCTAGGGCTTGCGGCAGTTCTTGCTTATGGCATTATTGATGGTGTCACATACACTAGTTTCTTTGTGCTTGCATTTATGGGCTATGAGAAGACCACCGGCAATAATCCTGCTGCAAATCTCCAATCTTTGTTGGGGGTAAGTAGTAATTCTTAAATAGGTATGAAATATGCAATTGATAAAAGGGGGGAATGGTTTTTGCTTTGATTTAGAGAAATAGAGACTTGATTTCCTAGAATTACTTCTCTTTTGAGCCAAGGGTCCTCTCTACCTCCACAACGATAGGAGTAAGGTAAGGTTCGCATACATCTTACTCTCCCCAAACCTAACTTGCGTTGTTGTAGACTTGATTTCCTGAACTTTTTAGTGCAAAGGTAAAAGGTACCATATTATGGAAATATGTGGTATTTACATTTAGGATACTGGATGAATGCTTATCATAGCATTTTCATTTGTCGTAGAATATCCACTTCAGTATTTACATACCGAAGTTGTCTTTTCCATTTCTTCAGATCAAAGTTAAGACCATCTTTTCCTTTTCACCATATCGTGAGTTCCTTTATCTTAGATCTAATTTAATGTCATTCTTCTCCTCTTTACCAGAAAGAGCATCCAGAGTTAACAATAATACTAATGAGAATCATTTAGCAACTATA-GGGAACTCGGAATTTTCATGGTGCCTCGTGTCAATCTGCACCTTACTTCCCCATTGGACATGTGCTATTTTAAT</genome_strand>
        <mrna_strand>A-TCAAGAGAGCAAAGGGTTTTGGAAGAAATGGAAGGTTTGGTAAACCCATTATTTTTTTTAGGATGATTTGGTGAAAACTGCTTTGACGTTGTGTTTTAATCAGGAGAACTCAGCGGAAATGAGTGCGAAGGTAGCAAAGCTAGGGCTTGCGGCAGTTCTTGCTTATGGCATTATTGATGGTGTCACATACACTAGTTTCTTTGTGCTTGCATTTATGGGCTATGAGAAGACCACCGGCAATAATCCTGCTGCAAATCTCCAATCTTTGTTGGGGGTAAGTAGTAATTCTTAAATAGGTATGAAATATGCAATTGATAAAAGGGGGGAATGGTTTTTGCTTTGATTTAGAGAAATAGAGACTTGATTTCCTAGAATTACTTCTCTTTTGAGCCAAGGGTCCTCTCTACCTCCACAACGATAGGAGTAAGGTAAGGTTCGCATACATCTTACTCTCCCCAAACCTAACTTGCGTTGTTGTAGACTTGATTTCCTGAACTTTTTAGTGCAAAGGTAAAAGGTACCATATTATGGAAATATGTGGTATTTACATTTAGGATACTGGATGAATGCTTATCATAGCATTTTCATTTGTCGTAGAATATCCACTTCAGTATTTACATACCGAAGTTGTCTTTTCCATTTCTTCAGATCAAAGTTAAGACCATCTTTTCCTTTTCACCATATCGTGAGTTCCTTTATCTTAGATCTAATTTAATGTCATTCTTCTCCTCTTTACCAGAAAGAGCATCCAGAGTTAACAATAATACTAATGAGAATCATTTAGCAACTATAGGGGAACTCGGAATTTTCATGGTGCCTCGTGTCAATCTGCACCCTACTTCCCCATTGGACATGTGCTATTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302018" ref_strand="+" ref_description="SGN-E302018 [cLEX-3-I6]">
      <seq>tccaatctttgttggggattataatcgcaatgtggacgggaaataatgtgaccaggccatttagggttgcaggagcagctgctctggcacctgccattgacaagggactaaagagaatacagagatacttaaactttccaagtcttgtatatgcttttgctttagtggtgactatagttgctgggacatgtttcaccattattggtttactcatcctttcaagatggggaaagtgaacgattccacccataagttagctggatatttgttgtaatctgttgagtgttacttgtatcattgagatagtcctctgactatatatttttccacttatatggtctcgtaaaagtagttggaaacgtgtttttagttagtacacaaatttctaanaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39676" stop="41314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39976" g_stop="39992" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39993" i_stop="40642" i_length="650">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40643" g_stop="41022" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="397" r_length="380" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E302018" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39976" e_stop="39992"/>
          <exon e_start="40643" e_stop="41022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATCTTTGTTGGGGGTAAGTAGTAATTCTTAAATAGGTATGAAATATGCAATTGATAAAAGGGGGGAATGGTTTTTGCTTTGATTTAGAGAAATAGAGACTTGATTTCCTAGAATTACTTCTCTTTTGAGCCAAGGGTCCTCTCTACCTCCACAACGATAGGAGTAAGGTAAGGTTCGCATACATCTTACTCTCCCCAAACCTAACTTGCGTTGTTGTAGACTTGATTTCCTGAACTTTTTAGTGCAAAGGTAAAAGGTACCATATTATGGAAATATGTGGTATTTACATTTAGGATACTGGATGAATGCTTATCATAGCATTTTCATTTGTCGTAGAATATCCACTTCAGTATTTACATACCGAAGTTGTCTTTTCCATTTCTTCAGATCAAAGTTAAGACCATCTTTTCCTTTTCACCATATCGTGAGTTCCTTTATCTTAGATCTAATTTAATGTCATTCTTCTCCTCTTTACCAGAAAGAGCATCCAGAGTTAACAATAATACTAATGAGAATCATTTAGCAACTATAGGGAACTCGGAATTTTCATGGTGCCTCGTGTCAATCTGCACCTTACTTCCCCATTGGACATGTGCTATTTTAATTGAGCACTTTTGTATTTTCATTTCTCCTTTGCTCAAAAAGCACTCTTCATAACGGCAGATTATAATCGCAATGTGGACGGGAAATAATGTGACCAGGCCATTTAGGGTTGCAGGAGCAGCTGCTCTGGCACCTGCCATTGACAAGGGACTAAAGAGAATACAGAGATACTTAAACTTTCCAAGTCTTGTATATGCTTTTGCTTTAGTGGTGACTATAGTTGCTGGGACATGTTTCACCATTATTGGTTTACTCATCCTTTCAAGATGGGGAAAGTGAACGATTCCACCCATAAGTTAGCTGGATATTTGTTGTAATCTGTTGAGTGTTACTTGTATCATTGAGATAGTCCTCTGACTATATATTTTTCCACTTATATGGTCTCGTAAAAGTAGTTGGAAACGTGTTTTTAGTTAGTACACAAATTTCTAAAGTTCAGA</genome_strand>
        <mrna_strand>TCCAATCTTTGTTGGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATAATCGCAATGTGGACGGGAAATAATGTGACCAGGCCATTTAGGGTTGCAGGAGCAGCTGCTCTGGCACCTGCCATTGACAAGGGACTAAAGAGAATACAGAGATACTTAAACTTTCCAAGTCTTGTATATGCTTTTGCTTTAGTGGTGACTATAGTTGCTGGGACATGTTTCACCATTATTGGTTTACTCATCCTTTCAAGATGGGGAAAGTGAACGATTCCACCCATAAGTTAGCTGGATATTTGTTGTAATCTGTTGAGTGTTACTTGTATCATTGAGATAGTCCTCTGACTATATATTTTTCCACTTATATGGTCTCGTAAAAGTAGTTGGAAACGTGTTTTTAGTTAGTACACAAATTTCTAANAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261718" ref_strand="+" ref_description="SGN-E261718 [cLEG-61-J7]">
      <seq>gattgaaccgagcaacagaacgaggatactggaaagctactggtaaagatagaaacatagctactagaaagggggcaaagattgggatgaagaagactttggtgtactacaatgggcgagctcctgaagggaagaggaccaattgggtgatccatgaatatcgtgcaactgacaagtcattggatggttcacgccctggacagggagcctttgtgctttgtcgtctctttaagaagaatgaattgaagcaagctgaaaatgtcgaaagttcacattttgatgaagttgaacatcttgtttcttctcctgctgttggaatatcaccaaccgatgatggattatcagcagtggctctatctccaatcatggaaagtgagagtaataaaagtaacccaccaaaaacctctggatgcaaaactcatgacacaagattatctattgatagttgtggtaatagttgcactgctggtgatggtgaagatttgatggtggacataacatcaggacaaccagatctccagatagaggaattgttgggactctttcgcgacccttcaccagagcctattgattggtctccgttgcattcacagtcgcanggtggagtttggatcttctatctcacatggtaccatgagcaatgagataaactgtgatcaaaaggatgtccagtgtcagaatgtaataaatggatctcatacgaatgagtttctaaattcatttctgtcagctctgatgagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41897" stop="43810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42197" g_stop="42399" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42400" i_stop="42862" i_length="463">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42863" g_stop="43168" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="509" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43169" i_stop="43275" i_length="107">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43276" g_stop="43510" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="744" r_length="235" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E261718" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42197" e_stop="42399"/>
          <exon e_start="42863" e_stop="43168"/>
          <exon e_start="43276" e_stop="43510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGAACCGAGCAACAGAACGAGGATACTGGAAAGCTACTGGTAAAGATAGAAACATAGCTACTAGAAAGGGGGCAAAGATTGGGATGAAGAAGACTTTGGTGTACTACAATGGGCGAGCTCCTGAAGGGAAGAGGACCAATTGGGTGATCCATGAATATCGTGCAACTGACAAGTCATTGGATGGTTCACGCCCTGGACAGGTAGGGACTGAAATCTTTCTTCTCTCTTCAATTTGAACTTCTTTTAATGTATCTTAGTTTTGGGATGGTTTTTGTTAGAAAAAGATTGTTTGTTCCATATGTGAAATTATGAGTTAATCTAATCTACTTGAAGGTATATTTGGCTGTTTCTTATCTCAGAAAAATCACGTCTTGAGGCGACATTAATATCAGTAGTGTTTACTTAAATGGAGTGGCATATGACTGGCCAGTTTAATTGTAGTTAGTCCACTTATATTCTGTTAGGACAACAAGGGGTTGGGTGCAACATTTTATGGTGTAGCCATGTAAAGCATATTTTTTGGCGGGTCCAACATTTTGTGAGATGTCCGAATCAACAACCGTGGATATTAGTTTAATCATTGGAGCTTACTGTTCCATTCCTATTTTGTGATGTGGCAAATTGGGCCATAGTAGATTATTAGTAATCATTTTCCTGGTGCAGGGAGCCTTTGTGCTTTGTCGTCTCTTTAAGAAGAATGAATTGAAGCAAGCTGAAAATGTCGAAAGTTCACATTTTGATGAAGTTGAACATCTTGTTTCTTCTCCTGCTGTTGGAATATCACCAACCGATGATGGATTATCAGCAGTGGCTCTATCTCCAATCATGGAAAGTGAGAGTAATAAAAGTAACCCACCAAAAACCTCTGGATGCAAAACTCATGACACAAGATTATCTATTGATAGTTGTGGTAATAGTTGCACTGCTGGTGATGGTGAAGATTTGATGGTGGACATAACATCAGGACAAGTAAGTAGAGCAATTCCCATTTCTGCCTTTTTCTTAAATATTGAGTTTTTCATTGCAGACAATTGGTTGAACTAATAGTGTACTTATTTCTTTGCTTCATATTTTAGCCAGATCTCCAGATAGAGGAATTGTTGGGACTCTTTCGCGACCCTTCACCAGAGCCTATTGATTGGTCTCCGTTGCATTCACAGTCGCA-GGTGGAGTTTGGATCTTCTATCTCACATGGTACCATGAGCAATGAGATAAACTGTGATCAAAAGGATGTCCAGTGTCAGAATGTAATAAAT-GATCTCAATACGAATGAGTTTCTAAATTCAATTCTTGTCAGCTCTGATGAGTTTT</genome_strand>
        <mrna_strand>GATTGAACCGAGCAACAGAACGAGGATACTGGAAAGCTACTGGTAAAGATAGAAACATAGCTACTAGAAAGGGGGCAAAGATTGGGATGAAGAAGACTTTGGTGTACTACAATGGGCGAGCTCCTGAAGGGAAGAGGACCAATTGGGTGATCCATGAATATCGTGCAACTGACAAGTCATTGGATGGTTCACGCCCTGGACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCCTTTGTGCTTTGTCGTCTCTTTAAGAAGAATGAATTGAAGCAAGCTGAAAATGTCGAAAGTTCACATTTTGATGAAGTTGAACATCTTGTTTCTTCTCCTGCTGTTGGAATATCACCAACCGATGATGGATTATCAGCAGTGGCTCTATCTCCAATCATGGAAAGTGAGAGTAATAAAAGTAACCCACCAAAAACCTCTGGATGCAAAACTCATGACACAAGATTATCTATTGATAGTTGTGGTAATAGTTGCACTGCTGGTGATGGTGAAGATTTGATGGTGGACATAACATCAGGACAA...........................................................................................................CCAGATCTCCAGATAGAGGAATTGTTGGGACTCTTTCGCGACCCTTCACCAGAGCCTATTGATTGGTCTCCGTTGCATTCACAGTCGCANGGTGGAGTTTGGATCTTCTATCTCACATGGTACCATGAGCAATGAGATAAACTGTGATCAAAAGGATGTCCAGTGTCAGAATGTAATAAATGGATCTC-ATACGAATGAGTTTCTAAATTCATTTC-TGTCAGCTCTGATGAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252978" ref_strand="+" ref_description="SGN-E252978 [cLEG-25-F3]">
      <seq>atgaagttgaacatcttgtttcttctcctgctgttttaatatcaccaaccgatgatggattatgagcagtggctctatctccaatcatggaaagtgagagtaataaaagtaacccaccaaaaacctctggatgcaaaactcatgacacaagattatctattgatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42639" stop="43404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42939" g_stop="43104" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E252978" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>166</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42939" e_stop="43104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGTTGAACATCTTGTTTCTTCTCCTGCTGTTGGAATATCACCAACCGATGATGGATTATCAGCAGTGGCTCTATCTCCAATCATGGAAAGTGAGAGTAATAAAAGTAACCCACCAAAAACCTCTGGATGCAAAACTCATGACACAAGATTATCTATTGATAG</genome_strand>
        <mrna_strand>ATGAAGTTGAACATCTTGTTTCTTCTCCTGCTGTTTTAATATCACCAACCGATGATGGATTATGAGCAGTGGCTCTATCTCCAATCATGGAAAGTGAGAGTAATAAAAGTAACCCACCAAAAACCTCTGGATGCAAAACTCATGACACAAGATTATCTATTGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301021" ref_strand="+" ref_description="SGN-E301021 [cLEW-22-K23]">
      <seq>acccaccaaaaacctctggatgcaaaactcatgacacaagattatctattgatagttgtggtaatagttgcactgctggtgatggtgaagatttgatggtggacataacatcaggacaaccagatctccagatagaggaattgttgggactctttcgcgacccttcaccagagcctattgattggtctccgttgcattcacagtcgcaggtggagtttggatcttctatttcacatggtaccatgagcaatgagataaactgtgatcaaaaggatgtccagtgtcagaatgtaataaatgatctcaatacgaatgagtttctaaattcaattcttgtcagctctgatgagttttcatatgaagattctgaaaaggaattgaggtcaatgtggtttgcctcgaacagtattaacactataacaacggcaccagttacggattctggaacttgtagtgtgttgaagtcacaagtcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42750" stop="43932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43050" g_stop="43168" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43169" i_stop="43275" i_length="107">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43276" g_stop="43632" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="476" r_length="357" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E301021" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43050" e_stop="43168"/>
          <exon e_start="43276" e_stop="43632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCACCAAAAACCTCTGGATGCAAAACTCATGACACAAGATTATCTATTGATAGTTGTGGTAATAGTTGCACTGCTGGTGATGGTGAAGATTTGATGGTGGACATAACATCAGGACAAGTAAGTAGAGCAATTCCCATTTCTGCCTTTTTCTTAAATATTGAGTTTTTCATTGCAGACAATTGGTTGAACTAATAGTGTACTTATTTCTTTGCTTCATATTTTAGCCAGATCTCCAGATAGAGGAATTGTTGGGACTCTTTCGCGACCCTTCACCAGAGCCTATTGATTGGTCTCCGTTGCATTCACAGTCGCAGGTGGAGTTTGGATCTTCTATCTCACATGGTACCATGAGCAATGAGATAAACTGTGATCAAAAGGATGTCCAGTGTCAGAATGTAATAAATGATCTCAATACGAATGAGTTTCTAAATTCAATTCTTGTCAGCTCTGATGAGTTTTCATATGAAGATTCTGAAAAGGAATTGAGGTCAATGTGGTTTGCCTCGAACAGTATTAACACTATAACAACGGCACCAGTTACGGATTCTGGAACTTGTAGTGTGTTGAAGTCACAAGTCACA</genome_strand>
        <mrna_strand>ACCCACCAAAAACCTCTGGATGCAAAACTCATGACACAAGATTATCTATTGATAGTTGTGGTAATAGTTGCACTGCTGGTGATGGTGAAGATTTGATGGTGGACATAACATCAGGACAA...........................................................................................................CCAGATCTCCAGATAGAGGAATTGTTGGGACTCTTTCGCGACCCTTCACCAGAGCCTATTGATTGGTCTCCGTTGCATTCACAGTCGCAGGTGGAGTTTGGATCTTCTATTTCACATGGTACCATGAGCAATGAGATAAACTGTGATCAAAAGGATGTCCAGTGTCAGAATGTAATAAATGATCTCAATACGAATGAGTTTCTAAATTCAATTCTTGTCAGCTCTGATGAGTTTTCATATGAAGATTCTGAAAAGGAATTGAGGTCAATGTGGTTTGCCTCGAACAGTATTAACACTATAACAACGGCACCAGTTACGGATTCTGGAACTTGTAGTGTGTTGAAGTCACAAGTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699221" ref_strand="+" ref_description="SGN-E699221 [FA09AF12]">
      <seq>aaaaacctctggatgcaaaacctcttgaccaagattatctattgatagttgtggtaatagttgcactgctggtgatggtgaagatttgatggtggacataacatcaggacaaccagatctccagatagaggaattgttgggactctttcgcgacccttcaccagagcctattgattggtctccgttgcattcacagtcgcaggtggagtttggatcttctatctcacatggtaccatgagcaatgagataaactgtgatcaaaaggatgtccagtgtcagaatgtaataaatgatctcaatacgaatgagtttctaaattcaattcttgtcagctctgatgagttttcatatgaagattctgaaaaggaattgaggtcaatgtggtttgcctcgaacagtattaacactataacaacggcaccagttacggattctggaacttgtagtgtgttgaagtcacaagtcacacaagagccagttaggagagatatatttgaacctgagctgctgttgggaaattgtggagagactgcattaatgagagaggttaattctgttgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42757" stop="44154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43057" g_stop="43168" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43169" i_stop="43275" i_length="107">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43276" g_stop="43641" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="478" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43642" i_stop="43769" i_length="128">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43770" g_stop="43854" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="563" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E699221" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43057" e_stop="43168"/>
          <exon e_start="43276" e_stop="43641"/>
          <exon e_start="43770" e_stop="43854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTCTGGATGCAAAA-CTCATGACACAAGATTATCTATTGATAGTTGTGGTAATAGTTGCACTGCTGGTGATGGTGAAGATTTGATGGTGGACATAACATCAGGACAAGTAAGTAGAGCAATTCCCATTTCTGCCTTTTTCTTAAATATTGAGTTTTTCATTGCAGACAATTGGTTGAACTAATAGTGTACTTATTTCTTTGCTTCATATTTTAGCCAGATCTCCAGATAGAGGAATTGTTGGGACTCTTTCGCGACCCTTCACCAGAGCCTATTGATTGGTCTCCGTTGCATTCACAGTCGCAGGTGGAGTTTGGATCTTCTATCTCACATGGTACCATGAGCAATGAGATAAACTGTGATCAAAAGGATGTCCAGTGTCAGAATGTAATAAATGATCTCAATACGAATGAGTTTCTAAATTCAATTCTTGTCAGCTCTGATGAGTTTTCATATGAAGATTCTGAAAAGGAATTGAGGTCAATGTGGTTTGCCTCGAACAGTATTAACACTATAACAACGGCACCAGTTACGGATTCTGGAACTTGTAGTGTGTTGAAGTCACAAGTCACACAAGAGCCAGTAAGTGGAACTCTATAGGTGTCTTTCAGTTTCTTGCATTTGTGAGTTGTCTCAAGACGTCAGTTACTTGAAAATTATTAACTGTTTTTTAGAGAACTGATCTTCTGCTGCTACTCTTTTTGTCCTAGGTTAGGAGAGATATATTTGAACCTGAGCTGCTGTTGGGAAATTGTGGAGAGACTGCATTAATGAGAGAGGTTAATTCTGTTGCAA</genome_strand>
        <mrna_strand>AAAAACCTCTGGATGCAAAACCTCTTGAC-CAAGATTATCTATTGATAGTTGTGGTAATAGTTGCACTGCTGGTGATGGTGAAGATTTGATGGTGGACATAACATCAGGACAA...........................................................................................................CCAGATCTCCAGATAGAGGAATTGTTGGGACTCTTTCGCGACCCTTCACCAGAGCCTATTGATTGGTCTCCGTTGCATTCACAGTCGCAGGTGGAGTTTGGATCTTCTATCTCACATGGTACCATGAGCAATGAGATAAACTGTGATCAAAAGGATGTCCAGTGTCAGAATGTAATAAATGATCTCAATACGAATGAGTTTCTAAATTCAATTCTTGTCAGCTCTGATGAGTTTTCATATGAAGATTCTGAAAAGGAATTGAGGTCAATGTGGTTTGCCTCGAACAGTATTAACACTATAACAACGGCACCAGTTACGGATTCTGGAACTTGTAGTGTGTTGAAGTCACAAGTCACACAAGAGCCA................................................................................................................................GTTAGGAGAGATATATTTGAACCTGAGCTGCTGTTGGGAAATTGTGGAGAGACTGCATTAATGAGAGAGGTTAATTCTGTTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725445" ref_strand="+" ref_description="SGN-E725445 [LA03BE10]">
      <seq>aggaattgttgggactctttcgcgacccttcaccagagcctattgattggtctccgttgcattcacagtcgcaggtggagtttggatcttctatctcacatggtaccatgagcaatgagataaactgtgatcaaaaggatgtccagtgtcagaatgtaataaatgatctcaatacgaatgagtttctaaattcaattcttgtcagctctgatgagttttcatatgaagattctgaaaaggaattgaggtcaatgtggtttgcctcgaacagtattaacactataacaacggcaccagttacggattctggaacttgtagtgtgttgaagtcacaagtcacacaagagccagttaggagagatatatttgaacctgagctgctgttgggaaattgtggagagactgctcttatgagagaggttaattctgttgcaacctcagtagacgaggtgtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42992" stop="44176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43292" g_stop="43641" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43642" i_stop="43769" i_length="128">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43770" g_stop="43876" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="457" r_length="107" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E725445" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43292" e_stop="43641"/>
          <exon e_start="43770" e_stop="43876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATTGTTGGGACTCTTTCGCGACCCTTCACCAGAGCCTATTGATTGGTCTCCGTTGCATTCACAGTCGCAGGTGGAGTTTGGATCTTCTATCTCACATGGTACCATGAGCAATGAGATAAACTGTGATCAAAAGGATGTCCAGTGTCAGAATGTAATAAATGATCTCAATACGAATGAGTTTCTAAATTCAATTCTTGTCAGCTCTGATGAGTTTTCATATGAAGATTCTGAAAAGGAATTGAGGTCAATGTGGTTTGCCTCGAACAGTATTAACACTATAACAACGGCACCAGTTACGGATTCTGGAACTTGTAGTGTGTTGAAGTCACAAGTCACACAAGAGCCAGTAAGTGGAACTCTATAGGTGTCTTTCAGTTTCTTGCATTTGTGAGTTGTCTCAAGACGTCAGTTACTTGAAAATTATTAACTGTTTTTTAGAGAACTGATCTTCTGCTGCTACTCTTTTTGTCCTAGGTTAGGAGAGATATATTTGAACCTGAGCTGCTGTTGGGAAATTGTGGAGAGACTGCATTAATGAGAGAGGTTAATTCTGTTGCAACCTCAGTGGACGAGGTGTTTGC</genome_strand>
        <mrna_strand>AGGAATTGTTGGGACTCTTTCGCGACCCTTCACCAGAGCCTATTGATTGGTCTCCGTTGCATTCACAGTCGCAGGTGGAGTTTGGATCTTCTATCTCACATGGTACCATGAGCAATGAGATAAACTGTGATCAAAAGGATGTCCAGTGTCAGAATGTAATAAATGATCTCAATACGAATGAGTTTCTAAATTCAATTCTTGTCAGCTCTGATGAGTTTTCATATGAAGATTCTGAAAAGGAATTGAGGTCAATGTGGTTTGCCTCGAACAGTATTAACACTATAACAACGGCACCAGTTACGGATTCTGGAACTTGTAGTGTGTTGAAGTCACAAGTCACACAAGAGCCA................................................................................................................................GTTAGGAGAGATATATTTGAACCTGAGCTGCTGTTGGGAAATTGTGGAGAGACTGCTCTTATGAGAGAGGTTAATTCTGTTGCAACCTCAGTAGACGAGGTGTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301131" ref_strand="+" ref_description="SGN-E301131 [cLEW-22-O13]">
      <seq>aattgttgggactctttcgcgacccttcaccagagcctattgattaggtctccgttgcattcacagtcgcaggtggagtttggatcttctatctcacatggtaccatgagcaatgagataaactgtgatcaaaaggatgtccagtgtcagaatgtaataaatgatctcaatacgaatgagtttctaaattcaattcttgtcagctctgatgagttttcatatgaagattctgaaaaggaattgaggtcaatgtggtttgcctcgaacagtattaacactataacaacggcaccagttacggattctggaacttgtagtgtgttgaagtcacaagtcacacaagagccagttaggagagatatatttgaacctgagctgctgttgggaaattgtggagagactgcattaatgagagaggttaattctgttgcaacctcagtggacgaagtgtttgcaacaccttattttcgcaatgatcactcaatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42995" stop="44210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43295" g_stop="43641" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43642" i_stop="43769" i_length="128">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43770" g_stop="43910" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="489" r_length="141" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E301131" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43295" e_stop="43641"/>
          <exon e_start="43770" e_stop="43910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTTGGGACTCTTTCGCGACCCTTCACCAGAGCCTATTGATT-GGTCTCCGTTGCATTCACAGTCGCAGGTGGAGTTTGGATCTTCTATCTCACATGGTACCATGAGCAATGAGATAAACTGTGATCAAAAGGATGTCCAGTGTCAGAATGTAATAAATGATCTCAATACGAATGAGTTTCTAAATTCAATTCTTGTCAGCTCTGATGAGTTTTCATATGAAGATTCTGAAAAGGAATTGAGGTCAATGTGGTTTGCCTCGAACAGTATTAACACTATAACAACGGCACCAGTTACGGATTCTGGAACTTGTAGTGTGTTGAAGTCACAAGTCACACAAGAGCCAGTAAGTGGAACTCTATAGGTGTCTTTCAGTTTCTTGCATTTGTGAGTTGTCTCAAGACGTCAGTTACTTGAAAATTATTAACTGTTTTTTAGAGAACTGATCTTCTGCTGCTACTCTTTTTGTCCTAGGTTAGGAGAGATATATTTGAACCTGAGCTGCTGTTGGGAAATTGTGGAGAGACTGCATTAATGAGAGAGGTTAATTCTGTTGCAACCTCAGTGGACGAGGTGTTTGCAACACCTTATTTTCGCAATGATCACTCAATGGGG</genome_strand>
        <mrna_strand>AATTGTTGGGACTCTTTCGCGACCCTTCACCAGAGCCTATTGATTAGGTCTCCGTTGCATTCACAGTCGCAGGTGGAGTTTGGATCTTCTATCTCACATGGTACCATGAGCAATGAGATAAACTGTGATCAAAAGGATGTCCAGTGTCAGAATGTAATAAATGATCTCAATACGAATGAGTTTCTAAATTCAATTCTTGTCAGCTCTGATGAGTTTTCATATGAAGATTCTGAAAAGGAATTGAGGTCAATGTGGTTTGCCTCGAACAGTATTAACACTATAACAACGGCACCAGTTACGGATTCTGGAACTTGTAGTGTGTTGAAGTCACAAGTCACACAAGAGCCA................................................................................................................................GTTAGGAGAGATATATTTGAACCTGAGCTGCTGTTGGGAAATTGTGGAGAGACTGCATTAATGAGAGAGGTTAATTCTGTTGCAACCTCAGTGGACGAAGTGTTTGCAACACCTTATTTTCGCAATGATCACTCAATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203443" ref_strand="+" ref_description="SGN-E203443 [cLEC-15-E5]">
      <seq>cgcaggtggagtttggatcttctatctcacatggtaccatgagcaatgagataaactgtgatcaaaaggatgtccagtgtcagaatgtaataaatgatctcaatacgaatgagtttctaaattcaattcttgtcagctctgatgagttttcatatgaagattctgaaaaggaattgaggtcaatgtggtttgcctcgaacagtattaacactataacaacggcaccagttacggattctggaacttgtagtgtgttgaagtcacaagtcacacaagagccagttaggagagatatatttgaacctgagctgctgatgggaaattgtggagagactgcattaatgagagaggttaattctgttgcaacctcagtggacgaggtgtttgcaacaccttattttcgcaatgatcactcaatggggaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43061" stop="44215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43361" g_stop="43641" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43642" i_stop="43769" i_length="128">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43770" g_stop="43915" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="427" r_length="146" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E203443" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43361" e_stop="43641"/>
          <exon e_start="43770" e_stop="43915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGGTGGAGTTTGGATCTTCTATCTCACATGGTACCATGAGCAATGAGATAAACTGTGATCAAAAGGATGTCCAGTGTCAGAATGTAATAAATGATCTCAATACGAATGAGTTTCTAAATTCAATTCTTGTCAGCTCTGATGAGTTTTCATATGAAGATTCTGAAAAGGAATTGAGGTCAATGTGGTTTGCCTCGAACAGTATTAACACTATAACAACGGCACCAGTTACGGATTCTGGAACTTGTAGTGTGTTGAAGTCACAAGTCACACAAGAGCCAGTAAGTGGAACTCTATAGGTGTCTTTCAGTTTCTTGCATTTGTGAGTTGTCTCAAGACGTCAGTTACTTGAAAATTATTAACTGTTTTTTAGAGAACTGATCTTCTGCTGCTACTCTTTTTGTCCTAGGTTAGGAGAGATATATTTGAACCTGAGCTGCTGTTGGGAAATTGTGGAGAGACTGCATTAATGAGAGAGGTTAATTCTGTTGCAACCTCAGTGGACGAGGTGTTTGCAACACCTTATTTTCGCAATGATCACTCAATGGGGAATGT</genome_strand>
        <mrna_strand>CGCAGGTGGAGTTTGGATCTTCTATCTCACATGGTACCATGAGCAATGAGATAAACTGTGATCAAAAGGATGTCCAGTGTCAGAATGTAATAAATGATCTCAATACGAATGAGTTTCTAAATTCAATTCTTGTCAGCTCTGATGAGTTTTCATATGAAGATTCTGAAAAGGAATTGAGGTCAATGTGGTTTGCCTCGAACAGTATTAACACTATAACAACGGCACCAGTTACGGATTCTGGAACTTGTAGTGTGTTGAAGTCACAAGTCACACAAGAGCCA................................................................................................................................GTTAGGAGAGATATATTTGAACCTGAGCTGCTGATGGGAAATTGTGGAGAGACTGCATTAATGAGAGAGGTTAATTCTGTTGCAACCTCAGTGGACGAGGTGTTTGCAACACCTTATTTTCGCAATGATCACTCAATGGGGAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274779" ref_strand="+" ref_description="SGN-E274779 [cLEN-13-C14]">
      <seq>tcacatggtaccatgagcaatgagataaactgtgatcaaaaggatgtccagtgtcagaatgtaataaatgatctcaatacgaatgagtttctaaattcaattcttgtcagctctgatgagttttcatatgaagattctgaaaaggaattgaggtcaatgtggtttgcctcgaacagtattaacactataacaacggcaccagttacggattctggaacttgtagtgtgttgaagtcacaagtcacacaagagccagttaggagagatatatttgaacctgagctgctgttgggaaattgtggagagactgcattaatgagagaggttaattctgttgcaacctcagtggacgaggtgtttgcaacaccttattttcgcaatgatcactcaatggggaatgtaggcactgattctgcttttggaataacactaaggactcggcggacgcagaatcaacctgacaacagccagcccggatctggaatgcaaggaactactgttagaagaatacgttaccaagtgaaacttcaaaccggaagagtagagcgtcgcatgccgactgattctgatcagggtggagcaaatcatgaaggactgtcagctgtatctgagagtgaaaagttctccaatgaagatagttcttctttgagtgctgctatctccagtgatgtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43087" stop="44566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43387" g_stop="43641" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43642" i_stop="43769" i_length="128">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43770" g_stop="44126" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="612" r_length="357" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44127" i_stop="44204" i_length="78">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44205" g_stop="44266" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="674" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E274779" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43387" e_stop="43641"/>
          <exon e_start="43770" e_stop="44126"/>
          <exon e_start="44205" e_stop="44266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATGGTACCATGAGCAATGAGATAAACTGTGATCAAAAGGATGTCCAGTGTCAGAATGTAATAAATGATCTCAATACGAATGAGTTTCTAAATTCAATTCTTGTCAGCTCTGATGAGTTTTCATATGAAGATTCTGAAAAGGAATTGAGGTCAATGTGGTTTGCCTCGAACAGTATTAACACTATAACAACGGCACCAGTTACGGATTCTGGAACTTGTAGTGTGTTGAAGTCACAAGTCACACAAGAGCCAGTAAGTGGAACTCTATAGGTGTCTTTCAGTTTCTTGCATTTGTGAGTTGTCTCAAGACGTCAGTTACTTGAAAATTATTAACTGTTTTTTAGAGAACTGATCTTCTGCTGCTACTCTTTTTGTCCTAGGTTAGGAGAGATATATTTGAACCTGAGCTGCTGTTGGGAAATTGTGGAGAGACTGCATTAATGAGAGAGGTTAATTCTGTTGCAACCTCAGTGGACGAGGTGTTTGCAACACCTTATTTTCGCAATGATCACTCAATGGGGAATGTAGGCACTGATTCTGCTTTTGGAATAACACTAAGGACTCGGCGGACGCAGAATCAACCTGACAACAGCCAGCCCGGATCTGGAATGCAAGGAACTACTGTTAGAAGAATACGTTACCAAGTGAAACTTCAAACCGGAAGAGTAGAGCGTCGCATGCCGACTGATTCTGATCAGGGTGGAGCAAATCATGAAGGACTGTCAGCTGTATCTGAGGTAAGTCTCCCTAATCCTCATGAGAAGAAGGGCTAAAAGGTGACACATTGACATATATTTAATAATTGGCATGTGCAGAGTGAAAAGTTCTCCAATGAAGATAGTTCTTCTTTGAGTGCTGCTATCTCCAGTGATGTGAC</genome_strand>
        <mrna_strand>TCACATGGTACCATGAGCAATGAGATAAACTGTGATCAAAAGGATGTCCAGTGTCAGAATGTAATAAATGATCTCAATACGAATGAGTTTCTAAATTCAATTCTTGTCAGCTCTGATGAGTTTTCATATGAAGATTCTGAAAAGGAATTGAGGTCAATGTGGTTTGCCTCGAACAGTATTAACACTATAACAACGGCACCAGTTACGGATTCTGGAACTTGTAGTGTGTTGAAGTCACAAGTCACACAAGAGCCA................................................................................................................................GTTAGGAGAGATATATTTGAACCTGAGCTGCTGTTGGGAAATTGTGGAGAGACTGCATTAATGAGAGAGGTTAATTCTGTTGCAACCTCAGTGGACGAGGTGTTTGCAACACCTTATTTTCGCAATGATCACTCAATGGGGAATGTAGGCACTGATTCTGCTTTTGGAATAACACTAAGGACTCGGCGGACGCAGAATCAACCTGACAACAGCCAGCCCGGATCTGGAATGCAAGGAACTACTGTTAGAAGAATACGTTACCAAGTGAAACTTCAAACCGGAAGAGTAGAGCGTCGCATGCCGACTGATTCTGATCAGGGTGGAGCAAATCATGAAGGACTGTCAGCTGTATCTGAG..............................................................................AGTGAAAAGTTCTCCAATGAAGATAGTTCTTCTTTGAGTGCTGCTATCTCCAGTGATGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276672" ref_strand="+" ref_description="SGN-E276672 [cLEN-14-C14]">
      <seq>tcacatggtaccatgagcaatgagataaactgtgatcaaaaggatgtccagtgtcagaatgtaataaatgatctcaatacgaatgagtttctaaattcaattcttgtcagctctgatgagttttcatatgaagattctgaaaaggaattgaggtcaatgtggtttgcctcgaacagtattaacactataacaacggcaccagttacggattctggaacttgtagtgtgttgaagtcacaagtcacacaagagccagttaggagagatatatttgaacctgagctgctgttgggaaattgtggagagactgcattaatgagagaggttaattctgttgcaacctcagtggacgaggtgtttgcaacaccttattttcgcaatgatcactcaatggggaatgtaggcactgattctgcttttggaataacactaaggactcggcggacgcagaatcaacctgacaacagccagcccggatctggaatgcaaggaactactgttagaagaatacgttaccaagtgaaacttcaaaccggaagagtagagcgtcgcatgccgactgattctgatcagggtggagcaaatcatgaaggactgtcagctgtatctgagagtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43087" stop="44430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43387" g_stop="43641" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43642" i_stop="43769" i_length="128">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43770" g_stop="44126" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="612" r_length="357" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44127" i_stop="44204" i_length="78">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44205" g_stop="44211" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="619" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E276672" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43387" e_stop="43641"/>
          <exon e_start="43770" e_stop="44126"/>
          <exon e_start="44205" e_stop="44211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATGGTACCATGAGCAATGAGATAAACTGTGATCAAAAGGATGTCCAGTGTCAGAATGTAATAAATGATCTCAATACGAATGAGTTTCTAAATTCAATTCTTGTCAGCTCTGATGAGTTTTCATATGAAGATTCTGAAAAGGAATTGAGGTCAATGTGGTTTGCCTCGAACAGTATTAACACTATAACAACGGCACCAGTTACGGATTCTGGAACTTGTAGTGTGTTGAAGTCACAAGTCACACAAGAGCCAGTAAGTGGAACTCTATAGGTGTCTTTCAGTTTCTTGCATTTGTGAGTTGTCTCAAGACGTCAGTTACTTGAAAATTATTAACTGTTTTTTAGAGAACTGATCTTCTGCTGCTACTCTTTTTGTCCTAGGTTAGGAGAGATATATTTGAACCTGAGCTGCTGTTGGGAAATTGTGGAGAGACTGCATTAATGAGAGAGGTTAATTCTGTTGCAACCTCAGTGGACGAGGTGTTTGCAACACCTTATTTTCGCAATGATCACTCAATGGGGAATGTAGGCACTGATTCTGCTTTTGGAATAACACTAAGGACTCGGCGGACGCAGAATCAACCTGACAACAGCCAGCCCGGATCTGGAATGCAAGGAACTACTGTTAGAAGAATACGTTACCAAGTGAAACTTCAAACCGGAAGAGTAGAGCGTCGCATGCCGACTGATTCTGATCAGGGTGGAGCAAATCATGAAGGACTGTCAGCTGTATCTGAGGTAAGTCTCCCTAATCCTCATGAGAAGAAGGGCTAAAAGGTGACACATTGACATATATTTAATAATTGGCATGTGCAGAGTGAAA</genome_strand>
        <mrna_strand>TCACATGGTACCATGAGCAATGAGATAAACTGTGATCAAAAGGATGTCCAGTGTCAGAATGTAATAAATGATCTCAATACGAATGAGTTTCTAAATTCAATTCTTGTCAGCTCTGATGAGTTTTCATATGAAGATTCTGAAAAGGAATTGAGGTCAATGTGGTTTGCCTCGAACAGTATTAACACTATAACAACGGCACCAGTTACGGATTCTGGAACTTGTAGTGTGTTGAAGTCACAAGTCACACAAGAGCCA................................................................................................................................GTTAGGAGAGATATATTTGAACCTGAGCTGCTGTTGGGAAATTGTGGAGAGACTGCATTAATGAGAGAGGTTAATTCTGTTGCAACCTCAGTGGACGAGGTGTTTGCAACACCTTATTTTCGCAATGATCACTCAATGGGGAATGTAGGCACTGATTCTGCTTTTGGAATAACACTAAGGACTCGGCGGACGCAGAATCAACCTGACAACAGCCAGCCCGGATCTGGAATGCAAGGAACTACTGTTAGAAGAATACGTTACCAAGTGAAACTTCAAACCGGAAGAGTAGAGCGTCGCATGCCGACTGATTCTGATCAGGGTGGAGCAAATCATGAAGGACTGTCAGCTGTATCTGAG..............................................................................AGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711954" ref_strand="+" ref_description="SGN-E711954 [FB03BH11]">
      <seq>ccatttgaacctgagctgctgttgggaaattgtggagagactgcattaatgagagaggttaattctgttgcaacctcagtggacgaggtgtttgcaacaccttattttcgcaatgatcactcaatggggaatgtaggcactgattctgcttttggaataacactaaggactcggcggacgcagaatcaacctgacaacagccagcccggatctggaatgcaaggaactactgttagaagaatacgttaccaagtgaaacttcaaaccggaagagtagagcgtcgcatgccgactgattctgatcagggtggagcaaatcatgaaggactgtcagctgtatctgagagtgaaaagttctccaatgaagatagttcttctttgagtgctgctatctccagtgatgtgacacaagataccatgtgcaaagaattaaaaggggatcgtcaaatggctgaagacttgaggagtgcaaatgtgaaagatacaaatgctttaaagagagcagcattgtcttcgttttcattaagtttctacatatccaaggtgttcgctgttgcaagtttactcatagtcttcttaggtgtttgtggattctttaagctgagacagtctgcatccaaattgtagcttcttgtaactggcttaacatgttttgttgattttatctccttttcaaatactgcaaaggagctaaagttgagaaaacttagaagttactactagtgtatactttatattataattagcttgttttgtacattactagcactatattgtgcaaggagatgtagttactttagacttttttccaaaaaattttcatttggcattttgacttcactcaatatataatggacatctgcttggtcttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43484" stop="45030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43782" g_stop="44126" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44127" i_stop="44204" i_length="78">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44205" g_stop="44740" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="883" r_length="538" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E711954" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43782" e_stop="44126"/>
          <exon e_start="44205" e_stop="44740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTGAACCTGAGCTGCTGTTGGGAAATTGTGGAGAGACTGCATTAATGAGAGAGGTTAATTCTGTTGCAACCTCAGTGGACGAGGTGTTTGCAACACCTTATTTTCGCAATGATCACTCAATGGGGAATGTAGGCACTGATTCTGCTTTTGGAATAACACTAAGGACTCGGCGGACGCAGAATCAACCTGACAACAGCCAGCCCGGATCTGGAATGCAAGGAACTACTGTTAGAAGAATACGTTACCAAGTGAAACTTCAAACCGGAAGAGTAGAGCGTCGCATGCCGACTGATTCTGATCAGGGTGGAGCAAATCATGAAGGACTGTCAGCTGTATCTGAGGTAAGTCTCCCTAATCCTCATGAGAAGAAGGGCTAAAAGGTGACACATTGACATATATTTAATAATTGGCATGTGCAGAGTGAAAAGTTCTCCAATGAAGATAGTTCTTCTTTGAGTGCTGCTATCTCCAGTGATGTGACACAAGATACCATGTGCAAAGAATTAAAAGGGGATCGTCAAATGGCTGAAGACTTGAGGAGTGCAAATGTGAAAGATACAAATGCTTTAAAGAGAGCAGCATTGTCTTCGTTTTCATTAAGTTTCTACATATCCAAGGTGTTCGCTGTTGCAAGTTTACTCATAGTCTTCTTAGGTGTTTGTGGATTCTTTAAGCTGAGACAGTCTGCATCCAAATTGTAGCTTCTTGTAACTGGCTTAACATGTTTTGTTGATTTTATCTCCTTTTCAAATACTGCAAAGGAGCTAAAGTTGAGAAAACTTAGAAGTTACTACTAGTGTATACTTTATATTATAATTAGCTTGTTTTGTACATTACTAGCACTATATTGTGCAAGGAGATGTAGTTACTTTAGACTTTTTTCC-AAAGATTTTCATTTGGCATTTTGACTTCACTCAATATAT-ATGGACATCTGCTTGGTCTTCATTTGCTAGAA</genome_strand>
        <mrna_strand>CCATTTGAACCTGAGCTGCTGTTGGGAAATTGTGGAGAGACTGCATTAATGAGAGAGGTTAATTCTGTTGCAACCTCAGTGGACGAGGTGTTTGCAACACCTTATTTTCGCAATGATCACTCAATGGGGAATGTAGGCACTGATTCTGCTTTTGGAATAACACTAAGGACTCGGCGGACGCAGAATCAACCTGACAACAGCCAGCCCGGATCTGGAATGCAAGGAACTACTGTTAGAAGAATACGTTACCAAGTGAAACTTCAAACCGGAAGAGTAGAGCGTCGCATGCCGACTGATTCTGATCAGGGTGGAGCAAATCATGAAGGACTGTCAGCTGTATCTGAG..............................................................................AGTGAAAAGTTCTCCAATGAAGATAGTTCTTCTTTGAGTGCTGCTATCTCCAGTGATGTGACACAAGATACCATGTGCAAAGAATTAAAAGGGGATCGTCAAATGGCTGAAGACTTGAGGAGTGCAAATGTGAAAGATACAAATGCTTTAAAGAGAGCAGCATTGTCTTCGTTTTCATTAAGTTTCTACATATCCAAGGTGTTCGCTGTTGCAAGTTTACTCATAGTCTTCTTAGGTGTTTGTGGATTCTTTAAGCTGAGACAGTCTGCATCCAAATTGTAGCTTCTTGTAACTGGCTTAACATGTTTTGTTGATTTTATCTCCTTTTCAAATACTGCAAAGGAGCTAAAGTTGAGAAAACTTAGAAGTTACTACTAGTGTATACTTTATATTATAATTAGCTTGTTTTGTACATTACTAGCACTATATTGTGCAAGGAGATGTAGTTACTTTAGACTTTTTTCCAAAAAATTTTCATTTGGCATTTTGACTTCACTCAATATATAATGGACATCTGCTTGGTCTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236572" ref_strand="+" ref_description="SGN-E236572 [cLED-13-K16]">
      <seq>ttattttcgcaatgatcactcaatggggaatgtaggcactgattctgcttttggaataacactaaggactcggcggacgcagaatcaacctgacaacagccagcccggatctggaatgcaaggaactactgttagaagaatacgttaccaagtgaaacttcaaaccggaagagtagagcgtcgcatgccgactgattctgatcagggtggagcaaatcatgaaggactgtcagctgtatctgagagtgaaaagttctccaatgaagatagttcttctttgagtgctgctatctccagtgatgtgacacaagataccatgtgcaaagaattaaaaggggatcgtcaaatggctgaagacttgaggagtgcaaatgtgaaagatacaaatgctttaaagagagcagcattgtcttcgttttcattaagtttctacatatccaaggtgttcgctgttgcaagtttactcatagtcttcttaggtgtttgtggattctttaagctgagacagtctgcatccaaattgtagcttcttgtaactggcttaacatgttttgttgattttatctccttttcaaatactgcaaaggagctaaagttgagaaaacttagaagttactactagtgtatactttatattataattagcttgttttgtacattactagcactatattgtgcaaggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43583" stop="44946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43883" g_stop="44126" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44127" i_stop="44204" i_length="78">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44205" g_stop="44646" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="686" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E236572" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43883" e_stop="44126"/>
          <exon e_start="44205" e_stop="44646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTCGCAATGATCACTCAATGGGGAATGTAGGCACTGATTCTGCTTTTGGAATAACACTAAGGACTCGGCGGACGCAGAATCAACCTGACAACAGCCAGCCCGGATCTGGAATGCAAGGAACTACTGTTAGAAGAATACGTTACCAAGTGAAACTTCAAACCGGAAGAGTAGAGCGTCGCATGCCGACTGATTCTGATCAGGGTGGAGCAAATCATGAAGGACTGTCAGCTGTATCTGAGGTAAGTCTCCCTAATCCTCATGAGAAGAAGGGCTAAAAGGTGACACATTGACATATATTTAATAATTGGCATGTGCAGAGTGAAAAGTTCTCCAATGAAGATAGTTCTTCTTTGAGTGCTGCTATCTCCAGTGATGTGACACAAGATACCATGTGCAAAGAATTAAAAGGGGATCGTCAAATGGCTGAAGACTTGAGGAGTGCAAATGTGAAAGATACAAATGCTTTAAAGAGAGCAGCATTGTCTTCGTTTTCATTAAGTTTCTACATATCCAAGGTGTTCGCTGTTGCAAGTTTACTCATAGTCTTCTTAGGTGTTTGTGGATTCTTTAAGCTGAGACAGTCTGCATCCAAATTGTAGCTTCTTGTAACTGGCTTAACATGTTTTGTTGATTTTATCTCCTTTTCAAATACTGCAAAGGAGCTAAAGTTGAGAAAACTTAGAAGTTACTACTAGTGTATACTTTATATTATAATTAGCTTGTTTTGTACATTACTAGCACTATATTGTGCAAGGAGAT</genome_strand>
        <mrna_strand>TTATTTTCGCAATGATCACTCAATGGGGAATGTAGGCACTGATTCTGCTTTTGGAATAACACTAAGGACTCGGCGGACGCAGAATCAACCTGACAACAGCCAGCCCGGATCTGGAATGCAAGGAACTACTGTTAGAAGAATACGTTACCAAGTGAAACTTCAAACCGGAAGAGTAGAGCGTCGCATGCCGACTGATTCTGATCAGGGTGGAGCAAATCATGAAGGACTGTCAGCTGTATCTGAG..............................................................................AGTGAAAAGTTCTCCAATGAAGATAGTTCTTCTTTGAGTGCTGCTATCTCCAGTGATGTGACACAAGATACCATGTGCAAAGAATTAAAAGGGGATCGTCAAATGGCTGAAGACTTGAGGAGTGCAAATGTGAAAGATACAAATGCTTTAAAGAGAGCAGCATTGTCTTCGTTTTCATTAAGTTTCTACATATCCAAGGTGTTCGCTGTTGCAAGTTTACTCATAGTCTTCTTAGGTGTTTGTGGATTCTTTAAGCTGAGACAGTCTGCATCCAAATTGTAGCTTCTTGTAACTGGCTTAACATGTTTTGTTGATTTTATCTCCTTTTCAAATACTGCAAAGGAGCTAAAGTTGAGAAAACTTAGAAGTTACTACTAGTGTATACTTTATATTATAATTAGCTTGTTTTGTACATTACTAGCACTATATTGTGCAAGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746104" ref_strand="+" ref_description="SGN-E746104 [GI|47105298]">
      <seq>gtcatcagtcgttgtaaacaacgattagatgaaaatcaacgtccgcaaaatcaactggcaaaatgttcacattttctccaagtttagtactcttattgcttttctgcttcagcttactgtattcagttcaaagcagctactttgatcaagaatttgttaagcagatactgagttcagcaagtaaagataaagattggttagtatccataagaaggaaaattcatgaatacccagaactcagattcgaagaatataataccagtgctctgattcgtagtgaacttgataagcttggggtttattatgaatacccttttgctaaaactggtattgttgctcgaattggcaatggttctccccctgttgttgctttgcgagccgatatggatgcccttcctatgcaggaacttgttgaatgggaacataagagcaaaattaatggcaaaatgcatggatgtggacatgatgctcatacgacgatgcttcttggtgctgctaagctgctgaatgaacggaaggacaaacttaatggaaccgtcagacttgttttccaacctgcggaggaaggaggagctggtgcaaatcatatgataaaggaaggagctctaggtgatgcagaagttatatttggtatgcatgttgattttaaaagacctacagggggcattggcacgagtcctggaccccttttagctgccgtttgcttctttgaagcaaaaatagaaggaaaaggtgggcatgctgcacaaccccatgaagctgtggatccaatacttgctgcatcatttgcaattgtggcattgcagcagctcatctcaagagaagtagatccccttcatagtcaagttctttctgttacttatgtcagaggtggatcagcatcaaatgtaattccatcatatgttgaatttgggggaactctgaggagtctaacaactgaaggcttgtttcaacttcaaaagagggtgaaagaggtaattgaaggacaggcagctgtgcataggtgtaaggcgtacgttgacatgaaagaagaggatttcccagcatatccagcttgcacaaatgatgagaacttacatcaacatgtagagagggttggcaaactcatgcttggttcggagaacgttggggatattgaaaaggtcatggcaggtgaggactttgccttctatcaacaagtgattcctggggttatctttcaaatagggatcagaaatgagaagttgggctctacccacgccccacattccccacacttctttcttgacgaggatgtccttccaattggagcagcaatgcacacagccatagcagagatgtatctgaacgattaccaacattccactgcagtttagataataacattattgtttgatggtctcttgagttccataaatgttccaattactcgttcattctgcacattgtctataatacaaaataaataagcaaatctaaagcggtgatgaccatctgttcatgtggcccatttcggaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46157" stop="50729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46457" g_stop="46860" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46861" i_stop="47384" i_length="524">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47385" g_stop="47510" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="530" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47511" i_stop="48391" i_length="881">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48392" g_stop="48706" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="845" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48707" i_stop="49212" i_length="506">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.692" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49213" g_stop="49341" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="846" r_stop="974" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49342" i_stop="49910" i_length="569">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49911" g_stop="50430" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="975" r_stop="1494" r_length="520" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1496" polyA_stop="1514"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E746104" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1494</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46457" e_stop="46860"/>
          <exon e_start="47385" e_stop="47510"/>
          <exon e_start="48392" e_stop="48706"/>
          <exon e_start="49213" e_stop="49341"/>
          <exon e_start="49911" e_stop="50430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATCAGTCGTTGTAAACAACGATTAGATGAAAATCAACGTCCGCAAAATCAACTGGCAAAATGTTCACATTTTCTCCAAGTTTAGTACTCTTATTGCTTTTCTGCTTCAGCTTACTGTATTCAGTTCAAAGCAGCTACTTTGATCAAGAATTTGTTAAGCAGATACTGAGTTCAGCAAGTAAAGATAAAGATTGGTTAGTATCCATAAGAAGGAAAATTCATGAATACCCAGAACTCAGATTCGAAGAATATAATACCAGTGCTCTGATTCGTAGTGAACTTGATAAGCTTGGGGTTTATTATGAATACCCTTTTGCTAAAACTGGTATTGTTGCTCGAATTGGCAATGGTTCTCCCCCTGTTGTTGCTTTGCGAGCCGATATGGATGCCCTTCCTATGCAGGTTTGTCCCAATTACTTATGTGCAAAAAGATTCAATTTTTCCTTATTTACATAGCATTCCCTCCGTTTCAGTTTGTTTGTCTGATTTTGTATTGACAAGAAGTTAACAAAACTTTTGAACATATATTGAATTTACTAAAATGTCATATAAACTTGTGATGTTAAAGATGCTGTGAAAAGTTAGAACGAAAGACTTGTCAGAAAAGAAACAGATTTGTTTTGAAATGGGCTAAAAAGGAAAGTAAGATACATAAATTTAAAATTAAGTGAGTATAATTTCTAAATGTCCTTCCACCCCTCTACCTCCGCCCTGAGTTGGGCTGTATCAAATCTAGAGGATTCAATATTACTTAGATTGTTTTTACACTGGTTGTCAGCATGTCACAATCCTCCAGCTTTATTTGGAGTTATGACAGACTATGCTCTATGAAGATTATATAGGGGAGTTATAAAGAGATAATTTGTACTGTGTATATTTATGTGTGAAATTTCTCTGGTATTGATCTCAAATGAATATAACCGTAGGAACTTGTTGAATGGGAACATAAGAGCAAAATTAATGGCAAAATGCATGGATGTGGACATGATGCTCATACGACGATGCTTCTTGGTGCTGCTAAGCTGCTGAATGAACGGAAGGACAAACTTAATGTGAGTTCTTTTGATGTTTGGTTTAAAGGAACTTTACTCTTCACTAATACTGATTCATTTGGAATGTGACTTGTGCTTGTGATATGAGAACTGAACTATTTCAAGCGGTGAACAATGGTTGTGTTAACATCATGTGTTTCTGCATACTTTTCTTCTCTTCAAACTTCTAGAGGCCTCACAATTAGAGGGATAGTTTGATTCCCTGAATTCTTCCTTTAAGCTCCTAGAGACCTTATCAAGGCCTAAAAGGAACTTAGAGATTTACCCTTTTTCAAAATTATCCTTGAATCTCCTGGCATTCAGAATCAGGACTTTCAAAAGTAGCTAGTTGTTTCCAGTAACAGCCGAGAGCACAATAATGTTCGTAACTGACATATCACCTTGTGAGAAATCACGTGGAGCACTAGTCAAAAAAGTTAATTTGCATTTTTATTGTCTTAATATCATAATTTGTCTTCTTTAGAACAGTCTGAACGATATGACCATATTGTTCTTTGATTCTCAAAATCTGAATTTGGGTCATTCTTTCCTAGAGGACTAGTAGTGCACTAGGAAGGATGACCTAATCATTTTCGAAGGCCACTTACCATTTCTTGGATCTCTTTATGTATAACTACATATGCTTCATCTTGCATATATCCATCAGAACATTCTGTTTTGAACCAGACTCTTTGATCACTTGTCAGTCTGTAATTGTCTGACTGATACTACTAGATTTTTCTTTTCAACTTCATGAGGATACATATGTCACATGACACTCCAAAATCACTGTCAAAATTCACCTAATCTGCTTGGTCCTTTGTGTGGCAATCATATAATATCAGTCAATATCTCTTTTTGCTAAATTCAATATTATTGTAATTCTTTTGTAAACCACAAAGGGAACCGTCAGACTTGTTTTCCAACCTGCGGAGGAAGGAGGAGCTGGTGCAAATCATATGATAAAGGAAGGAGCTCTAGGTGATGCAGAAGTTATATTTGGTATGCATGTTGATTTTAAAAGACCTACAGGGGGCATTGGCACGAGTCCTGGACCCCTTTTAGCTGCCGTTTGCTTCTTTGAAGCAAAAATAGAAGGAAAAGGTGGGCATGCTGCACAACCCCATGAAGCTGTGGATCCAATACTTGCTGCATCATTTGCAATTGTGGCATTGCAGCAGCTCATCTCAAGAGAAGTAGATCCCCTTCATAGTCAAGTACGCACCTTAATCTCATTTTTTGTCCATTGAGTCTTCTCAAAGCGAGGCAAAAAAACATGTTAGCGCTTCGCCTCACTTAATTGTGCTTCAGTGTCATCATTAAGGCTGTAACATATACTTCTCCTTGCAAATGAAGGGTCTCCAATATATATATATATATATATATATATATATATATATTGTGGTCTTTTTTCGTTTGCGCCTTTTTTCGTTAAAGCCCGTGCTTTTGTGCTTAAAGACCCAATGGACCTAAGAGCTTTATTGCACCTGTGAAAACACTGGTCCAATCCTTTGTCTTTTATTTTCCTTGAAGATGTTTACCTCATAAGAAGTGTACATAATAGTATGTTTAATATTATATAGGAACATGTATTCCCTTTACGAACATTTTTTGTTTTTAACAACTCATTTGTTTTGAGGTGGAAGCTGTATGATTTTTGAGACCTCAAGCCTCGTTTGATAGTTAGTCTTACTGATATGGAAATACTCACTTCTGCCTGAAGGTTCTTTCTGTTACTTATGTCAGAGGTGGATCAGCATCAAATGTAATTCCATCATATGTTGAATTTGGGGGAACTCTGAGGAGTCTAACAACTGAAGGCTTGTTTCAACTTCAAAAGAGGGTGAAAGAGGTACTTTGTTGCATCTTGGCTCTTGTTTACTATCAACATCTACCAACTAGATTTTCTGGCTGTTTCCTTAACGTGTAGTTTGTGTTACAAATTTAGTGATTTTTTGTCCATGTTTAATAGCCTTAAACAGATTGCCTTCTTAGGCCATTGGAAAATGATGGGTTACATGTACCTATGTAATGAACTAACAAGATTAAGGAAGACTTCTTGAACACGTATCAAAACCCTTTCTCCAGCTAAATGAATGACCAAACTAATGGCGTTCCTGCAGTTACCTTCCACAAGTAGGGTACGGGGAGGGTGGAATGTACACAGACCTTACCCCTTCTTGTGTAGGCAGAGAGACTTTTTTTGATTAGTCCCTCGGCTCAAGGCCAGCATAAACACAACATATATGGAGATCACTATTGAATCCTTCATTTCTTGATATACTGTTGCAGTAGATTCTAATTGTCTTCAATGTCCAGTATCGACGAAAATGCTTCTAGTTCTTTCTAATAAGAATAGAACCTAGACTTCTCGTAGTAATTTGGTGCACATTTGAAATACATATTTATATGAGCCTGCAGGTAATTGAAGGACAGGCAGCTGTGCATAGGTGTAAGGCGTACGTTGACATGAAAGAAGAGGATTTCCCAGCATATCCAGCTTGCACAAATGATGAGAACTTACATCAACATGTAGAGAGGGTTGGCAAACTCATGCTTGGTTCGGAGAACGTTGGGGATATTGAAAAGGTCATGGCAGGTGAGGACTTTGCCTTCTATCAACAAGTGATTCCTGGGGTTATCTTTCAAATAGGGATCAGAAATGAGAAGTTGGGCTCTACCCACGCCCCACATTCCCCACACTTCTTTCTTGACGAGGATGTCCTTCCAATTGGAGCAGCAATGCACACAGCCATAGCAGAGATGTATCTGAACGATTACCAACATTCCACTGCAGTTTAGATAATAACATTATTGTTTGATGGTCTCTTGAGTTCCATAAATGTTCCAATTACTCGTTCATTCTGCACATTGTCTATAATACAAAATAAATAAGCAAATCTAAAGCGGTGATGACCATCTGTTCATGTGGCCCATTTCA</genome_strand>
        <mrna_strand>GTCATCAGTCGTTGTAAACAACGATTAGATGAAAATCAACGTCCGCAAAATCAACTGGCAAAATGTTCACATTTTCTCCAAGTTTAGTACTCTTATTGCTTTTCTGCTTCAGCTTACTGTATTCAGTTCAAAGCAGCTACTTTGATCAAGAATTTGTTAAGCAGATACTGAGTTCAGCAAGTAAAGATAAAGATTGGTTAGTATCCATAAGAAGGAAAATTCATGAATACCCAGAACTCAGATTCGAAGAATATAATACCAGTGCTCTGATTCGTAGTGAACTTGATAAGCTTGGGGTTTATTATGAATACCCTTTTGCTAAAACTGGTATTGTTGCTCGAATTGGCAATGGTTCTCCCCCTGTTGTTGCTTTGCGAGCCGATATGGATGCCCTTCCTATGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGTTGAATGGGAACATAAGAGCAAAATTAATGGCAAAATGCATGGATGTGGACATGATGCTCATACGACGATGCTTCTTGGTGCTGCTAAGCTGCTGAATGAACGGAAGGACAAACTTAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGTCAGACTTGTTTTCCAACCTGCGGAGGAAGGAGGAGCTGGTGCAAATCATATGATAAAGGAAGGAGCTCTAGGTGATGCAGAAGTTATATTTGGTATGCATGTTGATTTTAAAAGACCTACAGGGGGCATTGGCACGAGTCCTGGACCCCTTTTAGCTGCCGTTTGCTTCTTTGAAGCAAAAATAGAAGGAAAAGGTGGGCATGCTGCACAACCCCATGAAGCTGTGGATCCAATACTTGCTGCATCATTTGCAATTGTGGCATTGCAGCAGCTCATCTCAAGAGAAGTAGATCCCCTTCATAGTCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTCTGTTACTTATGTCAGAGGTGGATCAGCATCAAATGTAATTCCATCATATGTTGAATTTGGGGGAACTCTGAGGAGTCTAACAACTGAAGGCTTGTTTCAACTTCAAAAGAGGGTGAAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTGAAGGACAGGCAGCTGTGCATAGGTGTAAGGCGTACGTTGACATGAAAGAAGAGGATTTCCCAGCATATCCAGCTTGCACAAATGATGAGAACTTACATCAACATGTAGAGAGGGTTGGCAAACTCATGCTTGGTTCGGAGAACGTTGGGGATATTGAAAAGGTCATGGCAGGTGAGGACTTTGCCTTCTATCAACAAGTGATTCCTGGGGTTATCTTTCAAATAGGGATCAGAAATGAGAAGTTGGGCTCTACCCACGCCCCACATTCCCCACACTTCTTTCTTGACGAGGATGTCCTTCCAATTGGAGCAGCAATGCACACAGCCATAGCAGAGATGTATCTGAACGATTACCAACATTCCACTGCAGTTTAGATAATAACATTATTGTTTGATGGTCTCTTGAGTTCCATAAATGTTCCAATTACTCGTTCATTCTGCACATTGTCTATAATACAAAATAAATAAGCAAATCTAAAGCGGTGATGACCATCTGTTCATGTGGCCCATTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720213" ref_strand="+" ref_description="SGN-E720213 [FC10AF01]">
      <seq>aaaatcaacgtccgcaaaatcaactggcaaaatgttcacagttttctccaagtttagtactcttattgcttttctgcttcaacttactgtattcagttcaaagcagctactttgatcaagaatttgttaagccgatactgagttcagcaagtaaagataaagattggttagtatccataagacggaaaattcatgaatacccaaaactcagattcgaagaatataataccaatgctctgattcgtaatgaacttgataagcttggggtttattatgaatacccttttgctaaaactggtattgttgctcgaattggcaatggttctccccctgttgttgctttgcgagccgatatggatgcccttcctatgcaggaacttgttgaatgggaacataagagcaaatttaatggcaaaatgcatggatgtggacatgatgctcatacgacgatgcttcttggtgctgctaagctgctgaatgaacggaaggacaaacttaatgcaaccgtcagactttttttccaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46188" stop="47811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46488" g_stop="46860" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46861" i_stop="47384" i_length="524">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47385" g_stop="47510" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="500" r_length="126" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E720213" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46488" e_stop="46860"/>
          <exon e_start="47385" e_stop="47510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAACGTCCGCAAAATCAACTGGCAAAATGTTCACA-TTTTCTCCAAGTTTAGTACTCTTATTGCTTTTCTGCTTCAGCTTACTGTATTCAGTTCAAAGCAGCTACTTTGATCAAGAATTTGTTAAGCAGATACTGAGTTCAGCAAGTAAAGATAAAGATTGGTTAGTATCCATAAGAAGGAAAATTCATGAATACCCAGAACTCAGATTCGAAGAATATAATACCAGTGCTCTGATTCGTAGTGAACTTGATAAGCTTGGGGTTTATTATGAATACCCTTTTGCTAAAACTGGTATTGTTGCTCGAATTGGCAATGGTTCTCCCCCTGTTGTTGCTTTGCGAGCCGATATGGATGCCCTTCCTATGCAGGTTTGTCCCAATTACTTATGTGCAAAAAGATTCAATTTTTCCTTATTTACATAGCATTCCCTCCGTTTCAGTTTGTTTGTCTGATTTTGTATTGACAAGAAGTTAACAAAACTTTTGAACATATATTGAATTTACTAAAATGTCATATAAACTTGTGATGTTAAAGATGCTGTGAAAAGTTAGAACGAAAGACTTGTCAGAAAAGAAACAGATTTGTTTTGAAATGGGCTAAAAAGGAAAGTAAGATACATAAATTTAAAATTAAGTGAGTATAATTTCTAAATGTCCTTCCACCCCTCTACCTCCGCCCTGAGTTGGGCTGTATCAAATCTAGAGGATTCAATATTACTTAGATTGTTTTTACACTGGTTGTCAGCATGTCACAATCCTCCAGCTTTATTTGGAGTTATGACAGACTATGCTCTATGAAGATTATATAGGGGAGTTATAAAGAGATAATTTGTACTGTGTATATTTATGTGTGAAATTTCTCTGGTATTGATCTCAAATGAATATAACCGTAGGAACTTGTTGAATGGGAACATAAGAGCAAAATTAATGGCAAAATGCATGGATGTGGACATGATGCTCATACGACGATGCTTCTTGGTGCTGCTAAGCTGCTGAATGAACGGAAGGACAAACTTAAT</genome_strand>
        <mrna_strand>AAAATCAACGTCCGCAAAATCAACTGGCAAAATGTTCACAGTTTTCTCCAAGTTTAGTACTCTTATTGCTTTTCTGCTTCAACTTACTGTATTCAGTTCAAAGCAGCTACTTTGATCAAGAATTTGTTAAGCCGATACTGAGTTCAGCAAGTAAAGATAAAGATTGGTTAGTATCCATAAGACGGAAAATTCATGAATACCCAAAACTCAGATTCGAAGAATATAATACCAATGCTCTGATTCGTAATGAACTTGATAAGCTTGGGGTTTATTATGAATACCCTTTTGCTAAAACTGGTATTGTTGCTCGAATTGGCAATGGTTCTCCCCCTGTTGTTGCTTTGCGAGCCGATATGGATGCCCTTCCTATGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGTTGAATGGGAACATAAGAGCAAATTTAATGGCAAAATGCATGGATGTGGACATGATGCTCATACGACGATGCTTCTTGGTGCTGCTAAGCTGCTGAATGAACGGAAGGACAAACTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326222" ref_strand="+" ref_description="SGN-E326222 [cTOC-16-D2]">
      <seq>aaatcaactggcaaaatgttcacattttctccaagtttagtactcttattgcttttctgcttcagcttactgtattcagttcaaagcagctactttgatcaagaatttgttaagcagatactgagttcagcaagtaaagataaagattggttagtatccataagaaggaaaattcgtgaatacccagaactcagattcgaagaatataataccagtgctctgattcgtagtgaacttgataagcttggggtttattatgaatacccttttgctaaaactggtattgatgctcgaattggcaatggttctccccctggtgttgctttgcgagccgatatggatgcccttcctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46204" stop="47157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46504" g_stop="46857" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E326222" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46504" e_stop="46857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAACTGGCAAAATGTTCACATTTTCTCCAAGTTTAGTACTCTTATTGCTTTTCTGCTTCAGCTTACTGTATTCAGTTCAAAGCAGCTACTTTGATCAAGAATTTGTTAAGCAGATACTGAGTTCAGCAAGTAAAGATAAAGATTGGTTAGTATCCATAAGAAGGAAAATTCATGAATACCCAGAACTCAGATTCGAAGAATATAATACCAGTGCTCTGATTCGTAGTGAACTTGATAAGCTTGGGGTTTATTATGAATACCCTTTTGCTAAAACTGGTATTGTTGCTCGAATTGGCAATGGTTCTCCCCCTGTTGTTGCTTTGCGAGCCGATATGGATGCCCTTCCTATG</genome_strand>
        <mrna_strand>AAATCAACTGGCAAAATGTTCACATTTTCTCCAAGTTTAGTACTCTTATTGCTTTTCTGCTTCAGCTTACTGTATTCAGTTCAAAGCAGCTACTTTGATCAAGAATTTGTTAAGCAGATACTGAGTTCAGCAAGTAAAGATAAAGATTGGTTAGTATCCATAAGAAGGAAAATTCGTGAATACCCAGAACTCAGATTCGAAGAATATAATACCAGTGCTCTGATTCGTAGTGAACTTGATAAGCTTGGGGTTTATTATGAATACCCTTTTGCTAAAACTGGTATTGATGCTCGAATTGGCAATGGTTCTCCCCCTGGTGTTGCTTTGCGAGCCGATATGGATGCCCTTCCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546399" ref_strand="+" ref_description="SGN-E546399 [TUS-69-L22]">
      <seq>aagctgctgaatgaacggaaggacaaacttattggaaccgtcagacttgttttccaacctgcggaggaaggaggagctggtgcaaatcatatgataaaggaaggagctctaggtgatgcagaagttatatttggtatgcatgttgattttaaaagacctacagggggcattggcactagtcctggaccccttttagctgccgtttgcttctttgaagcaaaaatagaaggcaaaggtgggcatgctgcacaaccccatgaagctgtggatccaatacttgctgcatcatttgcaattgtggcattgcagcagctcatctcaagagaagtagatccccttcatagtcaagttctttctgttacttatgtcagaggtggatcagcatcaaatgtaattccatcatatgttgaatttgggggaactctgaggagtctaacaactgaaggcttgtttcaacttcaaaagagggtgaaagaggtaattgaaggacaggcagctgtgcataggtgtaaggcgtacgttgacatgaaagaagaggatttcccagcatatccagcttgcacaaatgatgagaacttacatcaacatgtagagagggttggcaaactcatgcttggttcggagaacgttggggatattgaaaaggtcatggcangtgaggactttgccttctatcaacaaaagattcctggagttatctttcaaatagggatcagaaatgaaaagttgggctctacccacgccccacattcccctcacttctttcttgacgaggatgtccttccnattggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47178" stop="50527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47478" g_stop="47510" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47511" i_stop="48391" i_length="881">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48392" g_stop="48706" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="348" r_length="315" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48707" i_stop="49212" i_length="506">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.692" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49213" g_stop="49341" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="477" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49342" i_stop="49910" i_length="569">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49911" g_stop="50227" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="794" r_length="317" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E546399" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47478" e_stop="47510"/>
          <exon e_start="48392" e_stop="48706"/>
          <exon e_start="49213" e_stop="49341"/>
          <exon e_start="49911" e_stop="50227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTGCTGAATGAACGGAAGGACAAACTTAATGTGAGTTCTTTTGATGTTTGGTTTAAAGGAACTTTACTCTTCACTAATACTGATTCATTTGGAATGTGACTTGTGCTTGTGATATGAGAACTGAACTATTTCAAGCGGTGAACAATGGTTGTGTTAACATCATGTGTTTCTGCATACTTTTCTTCTCTTCAAACTTCTAGAGGCCTCACAATTAGAGGGATAGTTTGATTCCCTGAATTCTTCCTTTAAGCTCCTAGAGACCTTATCAAGGCCTAAAAGGAACTTAGAGATTTACCCTTTTTCAAAATTATCCTTGAATCTCCTGGCATTCAGAATCAGGACTTTCAAAAGTAGCTAGTTGTTTCCAGTAACAGCCGAGAGCACAATAATGTTCGTAACTGACATATCACCTTGTGAGAAATCACGTGGAGCACTAGTCAAAAAAGTTAATTTGCATTTTTATTGTCTTAATATCATAATTTGTCTTCTTTAGAACAGTCTGAACGATATGACCATATTGTTCTTTGATTCTCAAAATCTGAATTTGGGTCATTCTTTCCTAGAGGACTAGTAGTGCACTAGGAAGGATGACCTAATCATTTTCGAAGGCCACTTACCATTTCTTGGATCTCTTTATGTATAACTACATATGCTTCATCTTGCATATATCCATCAGAACATTCTGTTTTGAACCAGACTCTTTGATCACTTGTCAGTCTGTAATTGTCTGACTGATACTACTAGATTTTTCTTTTCAACTTCATGAGGATACATATGTCACATGACACTCCAAAATCACTGTCAAAATTCACCTAATCTGCTTGGTCCTTTGTGTGGCAATCATATAATATCAGTCAATATCTCTTTTTGCTAAATTCAATATTATTGTAATTCTTTTGTAAACCACAAAGGGAACCGTCAGACTTGTTTTCCAACCTGCGGAGGAAGGAGGAGCTGGTGCAAATCATATGATAAAGGAAGGAGCTCTAGGTGATGCAGAAGTTATATTTGGTATGCATGTTGATTTTAAAAGACCTACAGGGGGCATTGGCACGAGTCCTGGACCCCTTTTAGCTGCCGTTTGCTTCTTTGAAGCAAAAATAGAAGGAAAAGGTGGGCATGCTGCACAACCCCATGAAGCTGTGGATCCAATACTTGCTGCATCATTTGCAATTGTGGCATTGCAGCAGCTCATCTCAAGAGAAGTAGATCCCCTTCATAGTCAAGTACGCACCTTAATCTCATTTTTTGTCCATTGAGTCTTCTCAAAGCGAGGCAAAAAAACATGTTAGCGCTTCGCCTCACTTAATTGTGCTTCAGTGTCATCATTAAGGCTGTAACATATACTTCTCCTTGCAAATGAAGGGTCTCCAATATATATATATATATATATATATATATATATATATTGTGGTCTTTTTTCGTTTGCGCCTTTTTTCGTTAAAGCCCGTGCTTTTGTGCTTAAAGACCCAATGGACCTAAGAGCTTTATTGCACCTGTGAAAACACTGGTCCAATCCTTTGTCTTTTATTTTCCTTGAAGATGTTTACCTCATAAGAAGTGTACATAATAGTATGTTTAATATTATATAGGAACATGTATTCCCTTTACGAACATTTTTTGTTTTTAACAACTCATTTGTTTTGAGGTGGAAGCTGTATGATTTTTGAGACCTCAAGCCTCGTTTGATAGTTAGTCTTACTGATATGGAAATACTCACTTCTGCCTGAAGGTTCTTTCTGTTACTTATGTCAGAGGTGGATCAGCATCAAATGTAATTCCATCATATGTTGAATTTGGGGGAACTCTGAGGAGTCTAACAACTGAAGGCTTGTTTCAACTTCAAAAGAGGGTGAAAGAGGTACTTTGTTGCATCTTGGCTCTTGTTTACTATCAACATCTACCAACTAGATTTTCTGGCTGTTTCCTTAACGTGTAGTTTGTGTTACAAATTTAGTGATTTTTTGTCCATGTTTAATAGCCTTAAACAGATTGCCTTCTTAGGCCATTGGAAAATGATGGGTTACATGTACCTATGTAATGAACTAACAAGATTAAGGAAGACTTCTTGAACACGTATCAAAACCCTTTCTCCAGCTAAATGAATGACCAAACTAATGGCGTTCCTGCAGTTACCTTCCACAAGTAGGGTACGGGGAGGGTGGAATGTACACAGACCTTACCCCTTCTTGTGTAGGCAGAGAGACTTTTTTTGATTAGTCCCTCGGCTCAAGGCCAGCATAAACACAACATATATGGAGATCACTATTGAATCCTTCATTTCTTGATATACTGTTGCAGTAGATTCTAATTGTCTTCAATGTCCAGTATCGACGAAAATGCTTCTAGTTCTTTCTAATAAGAATAGAACCTAGACTTCTCGTAGTAATTTGGTGCACATTTGAAATACATATTTATATGAGCCTGCAGGTAATTGAAGGACAGGCAGCTGTGCATAGGTGTAAGGCGTACGTTGACATGAAAGAAGAGGATTTCCCAGCATATCCAGCTTGCACAAATGATGAGAACTTACATCAACATGTAGAGAGGGTTGGCAAACTCATGCTTGGTTCGGAGAACGTTGGGGATATTGAAAAGGTCATGGCAGGTGAGGACTTTGCCTTCTATCAACAAGTGATTCCTGGGGTTATCTTTCAAATAGGGATCAGAAATGAGAAGTTGGGCTCTACCCACGCCCCACATTCCCCACACTTCTTTCTTGACGAGGATGTCCTTCCAATTGGAGC</genome_strand>
        <mrna_strand>AAGCTGCTGAATGAACGGAAGGACAAACTTATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGTCAGACTTGTTTTCCAACCTGCGGAGGAAGGAGGAGCTGGTGCAAATCATATGATAAAGGAAGGAGCTCTAGGTGATGCAGAAGTTATATTTGGTATGCATGTTGATTTTAAAAGACCTACAGGGGGCATTGGCACTAGTCCTGGACCCCTTTTAGCTGCCGTTTGCTTCTTTGAAGCAAAAATAGAAGGCAAAGGTGGGCATGCTGCACAACCCCATGAAGCTGTGGATCCAATACTTGCTGCATCATTTGCAATTGTGGCATTGCAGCAGCTCATCTCAAGAGAAGTAGATCCCCTTCATAGTCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTCTGTTACTTATGTCAGAGGTGGATCAGCATCAAATGTAATTCCATCATATGTTGAATTTGGGGGAACTCTGAGGAGTCTAACAACTGAAGGCTTGTTTCAACTTCAAAAGAGGGTGAAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTGAAGGACAGGCAGCTGTGCATAGGTGTAAGGCGTACGTTGACATGAAAGAAGAGGATTTCCCAGCATATCCAGCTTGCACAAATGATGAGAACTTACATCAACATGTAGAGAGGGTTGGCAAACTCATGCTTGGTTCGGAGAACGTTGGGGATATTGAAAAGGTCATGGCANGTGAGGACTTTGCCTTCTATCAACAAAAGATTCCTGGAGTTATCTTTCAAATAGGGATCAGAAATGAAAAGTTGGGCTCTACCCACGCCCCACATTCCCCTCACTTCTTTCTTGACGAGGATGTCCTTCCNATTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358982" ref_strand="+" ref_description="SGN-E358982 [cLHT-24-F14]">
      <seq>agctgctgaatgaacggaaggacaaacttattggaaccgtcagacttgttttccaacctgcggaggaaggaggagctggtgcaaatcatatgataaaggaaggagctctaggtgatgcagaagttatatttggtatgcatgttgattttaaaagacctacagggggcattggcactagtcctggaccccttttagctgccgtttgcttctttgaagcaaaaatagaaggcaaaggtgggcatgctgcacaaccccatgaagctgtggatccaatacttgctgcatcatttgcaattgtggcattgcagcagctcatctcaagagaagtagatccccttcatagtcaagttctttctgttacttatgtcagaggtggatcagcatcaaatgtaattccatcatatgttgaatttgggggaactctgaggagtctaacaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47179" stop="49606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47479" g_stop="47510" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47511" i_stop="48391" i_length="881">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48392" g_stop="48706" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="347" r_length="315" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48707" i_stop="49212" i_length="506">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.692" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49213" g_stop="49306" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="441" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E358982" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47479" e_stop="47510"/>
          <exon e_start="48392" e_stop="48706"/>
          <exon e_start="49213" e_stop="49306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGCTGAATGAACGGAAGGACAAACTTAATGTGAGTTCTTTTGATGTTTGGTTTAAAGGAACTTTACTCTTCACTAATACTGATTCATTTGGAATGTGACTTGTGCTTGTGATATGAGAACTGAACTATTTCAAGCGGTGAACAATGGTTGTGTTAACATCATGTGTTTCTGCATACTTTTCTTCTCTTCAAACTTCTAGAGGCCTCACAATTAGAGGGATAGTTTGATTCCCTGAATTCTTCCTTTAAGCTCCTAGAGACCTTATCAAGGCCTAAAAGGAACTTAGAGATTTACCCTTTTTCAAAATTATCCTTGAATCTCCTGGCATTCAGAATCAGGACTTTCAAAAGTAGCTAGTTGTTTCCAGTAACAGCCGAGAGCACAATAATGTTCGTAACTGACATATCACCTTGTGAGAAATCACGTGGAGCACTAGTCAAAAAAGTTAATTTGCATTTTTATTGTCTTAATATCATAATTTGTCTTCTTTAGAACAGTCTGAACGATATGACCATATTGTTCTTTGATTCTCAAAATCTGAATTTGGGTCATTCTTTCCTAGAGGACTAGTAGTGCACTAGGAAGGATGACCTAATCATTTTCGAAGGCCACTTACCATTTCTTGGATCTCTTTATGTATAACTACATATGCTTCATCTTGCATATATCCATCAGAACATTCTGTTTTGAACCAGACTCTTTGATCACTTGTCAGTCTGTAATTGTCTGACTGATACTACTAGATTTTTCTTTTCAACTTCATGAGGATACATATGTCACATGACACTCCAAAATCACTGTCAAAATTCACCTAATCTGCTTGGTCCTTTGTGTGGCAATCATATAATATCAGTCAATATCTCTTTTTGCTAAATTCAATATTATTGTAATTCTTTTGTAAACCACAAAGGGAACCGTCAGACTTGTTTTCCAACCTGCGGAGGAAGGAGGAGCTGGTGCAAATCATATGATAAAGGAAGGAGCTCTAGGTGATGCAGAAGTTATATTTGGTATGCATGTTGATTTTAAAAGACCTACAGGGGGCATTGGCACGAGTCCTGGACCCCTTTTAGCTGCCGTTTGCTTCTTTGAAGCAAAAATAGAAGGAAAAGGTGGGCATGCTGCACAACCCCATGAAGCTGTGGATCCAATACTTGCTGCATCATTTGCAATTGTGGCATTGCAGCAGCTCATCTCAAGAGAAGTAGATCCCCTTCATAGTCAAGTACGCACCTTAATCTCATTTTTTGTCCATTGAGTCTTCTCAAAGCGAGGCAAAAAAACATGTTAGCGCTTCGCCTCACTTAATTGTGCTTCAGTGTCATCATTAAGGCTGTAACATATACTTCTCCTTGCAAATGAAGGGTCTCCAATATATATATATATATATATATATATATATATATATTGTGGTCTTTTTTCGTTTGCGCCTTTTTTCGTTAAAGCCCGTGCTTTTGTGCTTAAAGACCCAATGGACCTAAGAGCTTTATTGCACCTGTGAAAACACTGGTCCAATCCTTTGTCTTTTATTTTCCTTGAAGATGTTTACCTCATAAGAAGTGTACATAATAGTATGTTTAATATTATATAGGAACATGTATTCCCTTTACGAACATTTTTTGTTTTTAACAACTCATTTGTTTTGAGGTGGAAGCTGTATGATTTTTGAGACCTCAAGCCTCGTTTGATAGTTAGTCTTACTGATATGGAAATACTCACTTCTGCCTGAAGGTTCTTTCTGTTACTTATGTCAGAGGTGGATCAGCATCAAATGTAATTCCATCATATGTTGAATTTGGGGGAACTCTGAGGAGTCTAACAACTG</genome_strand>
        <mrna_strand>AGCTGCTGAATGAACGGAAGGACAAACTTATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGTCAGACTTGTTTTCCAACCTGCGGAGGAAGGAGGAGCTGGTGCAAATCATATGATAAAGGAAGGAGCTCTAGGTGATGCAGAAGTTATATTTGGTATGCATGTTGATTTTAAAAGACCTACAGGGGGCATTGGCACTAGTCCTGGACCCCTTTTAGCTGCCGTTTGCTTCTTTGAAGCAAAAATAGAAGGCAAAGGTGGGCATGCTGCACAACCCCATGAAGCTGTGGATCCAATACTTGCTGCATCATTTGCAATTGTGGCATTGCAGCAGCTCATCTCAAGAGAAGTAGATCCCCTTCATAGTCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTCTGTTACTTATGTCAGAGGTGGATCAGCATCAAATGTAATTCCATCATATGTTGAATTTGGGGGAACTCTGAGGAGTCTAACAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546398" ref_strand="+" ref_description="SGN-E546398 [TUS-69-L22](-)">
      <seq>tacttatgtcagaggtggatcagcatcaaatgtaattccatcatatgttgaatttgggggaactctgaggagtctaacaactgaaggcttgtttcaacttcaaaagagggtgaaagaggtaattgaaggacaggcagctgtgcataggtgtaaggcgtacgttgacatgaaagaagaggatttcccagcatatccagcttgcacaaatgatgagaacttacatcaacatgtagagagggttggcaaactcatgcttggttcggagaacgttggggatattgaaaaggtcatggcaggtgaggactttgccttctatcaacaaaagattcctggagttatctttcaaatagggatcagaaatgaaaagttgggctctacccacgccccacattcccctcacttctttcttgacgaggatgtccttccaattggagcagcaatgcacacagccatagcagagatgtatctgaacgattaccaacattccgctgcagtttagataataacattattgtttgatgctctcttgagttcaataaatgttccaattactcgttcattctgcacattgtctataataacaaaataaataagcaaatctaacgcggtgatgaccatctgttcatgtggcccaaaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48924" stop="50725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49224" g_stop="49341" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49342" i_stop="49910" i_length="569">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49911" g_stop="50424" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="633" r_length="515" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="634" polyA_stop="655"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E546398" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49224" e_stop="49341"/>
          <exon e_start="49911" e_stop="50424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTATGTCAGAGGTGGATCAGCATCAAATGTAATTCCATCATATGTTGAATTTGGGGGAACTCTGAGGAGTCTAACAACTGAAGGCTTGTTTCAACTTCAAAAGAGGGTGAAAGAGGTACTTTGTTGCATCTTGGCTCTTGTTTACTATCAACATCTACCAACTAGATTTTCTGGCTGTTTCCTTAACGTGTAGTTTGTGTTACAAATTTAGTGATTTTTTGTCCATGTTTAATAGCCTTAAACAGATTGCCTTCTTAGGCCATTGGAAAATGATGGGTTACATGTACCTATGTAATGAACTAACAAGATTAAGGAAGACTTCTTGAACACGTATCAAAACCCTTTCTCCAGCTAAATGAATGACCAAACTAATGGCGTTCCTGCAGTTACCTTCCACAAGTAGGGTACGGGGAGGGTGGAATGTACACAGACCTTACCCCTTCTTGTGTAGGCAGAGAGACTTTTTTTGATTAGTCCCTCGGCTCAAGGCCAGCATAAACACAACATATATGGAGATCACTATTGAATCCTTCATTTCTTGATATACTGTTGCAGTAGATTCTAATTGTCTTCAATGTCCAGTATCGACGAAAATGCTTCTAGTTCTTTCTAATAAGAATAGAACCTAGACTTCTCGTAGTAATTTGGTGCACATTTGAAATACATATTTATATGAGCCTGCAGGTAATTGAAGGACAGGCAGCTGTGCATAGGTGTAAGGCGTACGTTGACATGAAAGAAGAGGATTTCCCAGCATATCCAGCTTGCACAAATGATGAGAACTTACATCAACATGTAGAGAGGGTTGGCAAACTCATGCTTGGTTCGGAGAACGTTGGGGATATTGAAAAGGTCATGGCAGGTGAGGACTTTGCCTTCTATCAACAAGTGATTCCTGGGGTTATCTTTCAAATAGGGATCAGAAATGAGAAGTTGGGCTCTACCCACGCCCCACATTCCCCACACTTCTTTCTTGACGAGGATGTCCTTCCAATTGGAGCAGCAATGCACACAGCCATAGCAGAGATGTATCTGAACGATTACCAACATTCCACTGCAGTTTAGATAATAACATTATTGTTTGATGGTCTCTTGAGTTCCATAAATGTTCCAATTACTCGTTCATTCTGCACATTGTCTATAAT-ACAAAATAAATAAGCAAATCTAAAGCGGTGATGACCATCTGTTCATGTGGCCC</genome_strand>
        <mrna_strand>TACTTATGTCAGAGGTGGATCAGCATCAAATGTAATTCCATCATATGTTGAATTTGGGGGAACTCTGAGGAGTCTAACAACTGAAGGCTTGTTTCAACTTCAAAAGAGGGTGAAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTGAAGGACAGGCAGCTGTGCATAGGTGTAAGGCGTACGTTGACATGAAAGAAGAGGATTTCCCAGCATATCCAGCTTGCACAAATGATGAGAACTTACATCAACATGTAGAGAGGGTTGGCAAACTCATGCTTGGTTCGGAGAACGTTGGGGATATTGAAAAGGTCATGGCAGGTGAGGACTTTGCCTTCTATCAACAAAAGATTCCTGGAGTTATCTTTCAAATAGGGATCAGAAATGAAAAGTTGGGCTCTACCCACGCCCCACATTCCCCTCACTTCTTTCTTGACGAGGATGTCCTTCCAATTGGAGCAGCAATGCACACAGCCATAGCAGAGATGTATCTGAACGATTACCAACATTCCGCTGCAGTTTAGATAATAACATTATTGTTTGATGCTCTCTTGAGTTCAATAAATGTTCCAATTACTCGTTCATTCTGCACATTGTCTATAATAACAAAATAAATAAGCAAATCTAACGCGGTGATGACCATCTGTTCATGTGGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284372" ref_strand="+" ref_description="SGN-E284372 [cLER-16-M5]">
      <seq>ttatgtcagaggtggatcagcatcaaatgtaattccatcatatgttgaatttgggggaactctgaggagtctaacaactgaaggcttgtttcaacttcaaaagagggtgaaagaggtaattgaaggacaggcagctgtgcataggtgtaaggcgtacgttgacatgaaagaagaggatttcccagcatatccagcttgcacaaatgatgagaacttacatcaacatgtagagagggttggcaaactcatgcttggttcggagaacgttggggatattgaaaaggtcatggcaggtgaggactttgccttctatcaacaagtgattcctggggttatctttcaaatagggatcagaaatgagaagttgggctctacccacgccccacattccccacacttctttcttgacgaggatgtccttccaattggagcagcaatgcacacagccatagcagagatgtatctgaacgattaccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48927" stop="50574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49227" g_stop="49341" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49342" i_stop="49910" i_length="569">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49911" g_stop="50274" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="479" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E284372" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49227" e_stop="49341"/>
          <exon e_start="49911" e_stop="50274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTCAGAGGTGGATCAGCATCAAATGTAATTCCATCATATGTTGAATTTGGGGGAACTCTGAGGAGTCTAACAACTGAAGGCTTGTTTCAACTTCAAAAGAGGGTGAAAGAGGTACTTTGTTGCATCTTGGCTCTTGTTTACTATCAACATCTACCAACTAGATTTTCTGGCTGTTTCCTTAACGTGTAGTTTGTGTTACAAATTTAGTGATTTTTTGTCCATGTTTAATAGCCTTAAACAGATTGCCTTCTTAGGCCATTGGAAAATGATGGGTTACATGTACCTATGTAATGAACTAACAAGATTAAGGAAGACTTCTTGAACACGTATCAAAACCCTTTCTCCAGCTAAATGAATGACCAAACTAATGGCGTTCCTGCAGTTACCTTCCACAAGTAGGGTACGGGGAGGGTGGAATGTACACAGACCTTACCCCTTCTTGTGTAGGCAGAGAGACTTTTTTTGATTAGTCCCTCGGCTCAAGGCCAGCATAAACACAACATATATGGAGATCACTATTGAATCCTTCATTTCTTGATATACTGTTGCAGTAGATTCTAATTGTCTTCAATGTCCAGTATCGACGAAAATGCTTCTAGTTCTTTCTAATAAGAATAGAACCTAGACTTCTCGTAGTAATTTGGTGCACATTTGAAATACATATTTATATGAGCCTGCAGGTAATTGAAGGACAGGCAGCTGTGCATAGGTGTAAGGCGTACGTTGACATGAAAGAAGAGGATTTCCCAGCATATCCAGCTTGCACAAATGATGAGAACTTACATCAACATGTAGAGAGGGTTGGCAAACTCATGCTTGGTTCGGAGAACGTTGGGGATATTGAAAAGGTCATGGCAGGTGAGGACTTTGCCTTCTATCAACAAGTGATTCCTGGGGTTATCTTTCAAATAGGGATCAGAAATGAGAAGTTGGGCTCTACCCACGCCCCACATTCCCCACACTTCTTTCTTGACGAGGATGTCCTTCCAATTGGAGCAGCAATGCACACAGCCATAGCAGAGATGTATCTGAACGATTACCAAC</genome_strand>
        <mrna_strand>TTATGTCAGAGGTGGATCAGCATCAAATGTAATTCCATCATATGTTGAATTTGGGGGAACTCTGAGGAGTCTAACAACTGAAGGCTTGTTTCAACTTCAAAAGAGGGTGAAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTGAAGGACAGGCAGCTGTGCATAGGTGTAAGGCGTACGTTGACATGAAAGAAGAGGATTTCCCAGCATATCCAGCTTGCACAAATGATGAGAACTTACATCAACATGTAGAGAGGGTTGGCAAACTCATGCTTGGTTCGGAGAACGTTGGGGATATTGAAAAGGTCATGGCAGGTGAGGACTTTGCCTTCTATCAACAAGTGATTCCTGGGGTTATCTTTCAAATAGGGATCAGAAATGAGAAGTTGGGCTCTACCCACGCCCCACATTCCCCACACTTCTTTCTTGACGAGGATGTCCTTCCAATTGGAGCAGCAATGCACACAGCCATAGCAGAGATGTATCTGAACGATTACCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353217" ref_strand="+" ref_description="SGN-E353217 [cTOS-14-F13]">
      <seq>ggaactctgaggagtctaacaactgaaggcttgtttcaacttcaaaagagggtgaaagaggtaattgaaggacaggcagctgtgcataggtgtaaggcgtacgttgacatgaaagaagaggatttcccagcatatccagcttgcacaaatgatgagaacttacatcaacatgtagagagggttggcaaactcatgcttggttcggagaacgttggggatattgaaaaggtcatggcaggtgaggactttgccttctatcaacaagtgattcctggggttatctttcaaatagggatcagaaatgagaagttgggctctacccacgccccacattccccacacttctttcttgacgaggatgtccttccaattggagcagcaatgcacacagccatagcagagatgtatctgaacgattaccaacattccactgcagtttagataataacattattgtttgatggtctcttgagttccataaatgttccaattactcgttcattctgcacattgtctataatacaaaataaataagcaaatctaaagcggtgatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48982" stop="50706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49282" g_stop="49341" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49342" i_stop="49910" i_length="569">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49911" g_stop="50406" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="556" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E353217" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49282" e_stop="49341"/>
          <exon e_start="49911" e_stop="50406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTCTGAGGAGTCTAACAACTGAAGGCTTGTTTCAACTTCAAAAGAGGGTGAAAGAGGTACTTTGTTGCATCTTGGCTCTTGTTTACTATCAACATCTACCAACTAGATTTTCTGGCTGTTTCCTTAACGTGTAGTTTGTGTTACAAATTTAGTGATTTTTTGTCCATGTTTAATAGCCTTAAACAGATTGCCTTCTTAGGCCATTGGAAAATGATGGGTTACATGTACCTATGTAATGAACTAACAAGATTAAGGAAGACTTCTTGAACACGTATCAAAACCCTTTCTCCAGCTAAATGAATGACCAAACTAATGGCGTTCCTGCAGTTACCTTCCACAAGTAGGGTACGGGGAGGGTGGAATGTACACAGACCTTACCCCTTCTTGTGTAGGCAGAGAGACTTTTTTTGATTAGTCCCTCGGCTCAAGGCCAGCATAAACACAACATATATGGAGATCACTATTGAATCCTTCATTTCTTGATATACTGTTGCAGTAGATTCTAATTGTCTTCAATGTCCAGTATCGACGAAAATGCTTCTAGTTCTTTCTAATAAGAATAGAACCTAGACTTCTCGTAGTAATTTGGTGCACATTTGAAATACATATTTATATGAGCCTGCAGGTAATTGAAGGACAGGCAGCTGTGCATAGGTGTAAGGCGTACGTTGACATGAAAGAAGAGGATTTCCCAGCATATCCAGCTTGCACAAATGATGAGAACTTACATCAACATGTAGAGAGGGTTGGCAAACTCATGCTTGGTTCGGAGAACGTTGGGGATATTGAAAAGGTCATGGCAGGTGAGGACTTTGCCTTCTATCAACAAGTGATTCCTGGGGTTATCTTTCAAATAGGGATCAGAAATGAGAAGTTGGGCTCTACCCACGCCCCACATTCCCCACACTTCTTTCTTGACGAGGATGTCCTTCCAATTGGAGCAGCAATGCACACAGCCATAGCAGAGATGTATCTGAACGATTACCAACATTCCACTGCAGTTTAGATAATAACATTATTGTTTGATGGTCTCTTGAGTTCCATAAATGTTCCAATTACTCGTTCATTCTGCACATTGTCTATAATACAAAATAAATAAGCAAATCTAAAGCGGTGATGAC</genome_strand>
        <mrna_strand>GGAACTCTGAGGAGTCTAACAACTGAAGGCTTGTTTCAACTTCAAAAGAGGGTGAAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTGAAGGACAGGCAGCTGTGCATAGGTGTAAGGCGTACGTTGACATGAAAGAAGAGGATTTCCCAGCATATCCAGCTTGCACAAATGATGAGAACTTACATCAACATGTAGAGAGGGTTGGCAAACTCATGCTTGGTTCGGAGAACGTTGGGGATATTGAAAAGGTCATGGCAGGTGAGGACTTTGCCTTCTATCAACAAGTGATTCCTGGGGTTATCTTTCAAATAGGGATCAGAAATGAGAAGTTGGGCTCTACCCACGCCCCACATTCCCCACACTTCTTTCTTGACGAGGATGTCCTTCCAATTGGAGCAGCAATGCACACAGCCATAGCAGAGATGTATCTGAACGATTACCAACATTCCACTGCAGTTTAGATAATAACATTATTGTTTGATGGTCTCTTGAGTTCCATAAATGTTCCAATTACTCGTTCATTCTGCACATTGTCTATAATACAAAATAAATAAGCAAATCTAAAGCGGTGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279550" ref_strand="+" ref_description="SGN-E279550 [cLER-5-J11]">
      <seq>aaaagagggtgaaagaggtaattgaaggacaggcagctgtgcataggtgtaaggcgtacgttgacatgaaagaagaggatttcccagcatatccagcttgcacaaatgatgagaacttacatcaacatgtagagagggttggcaaactcatgcttggttcggagaacgttggggatattgaaaaggtcatggcaggtgaggactttgccttctatcaacaagtgattcctggggttatctttcaaatagggatcagaaatgagaagttgggctctacccacgccccacattccccacacttctttcttgacgaggatgtccttccaattggagcagcaatgcacacagccatagcagagatgtatctgaacgattaccaacattccactgcagtttagataataacattattgtttgatggtctcttgagttccataaatgttccaattactcgttcattctgcacattgtctataatacaaaataaataagcaaatctaaagcggtgatgaccatctgttcatgtggcccatttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49025" stop="78460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49325" g_stop="49341" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49342" i_stop="49910" i_length="569">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49911" g_stop="50439" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="546" r_length="529" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E279550" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49325" e_stop="49341"/>
          <exon e_start="49911" e_stop="50439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGGGTGAAAGAGGTACTTTGTTGCATCTTGGCTCTTGTTTACTATCAACATCTACCAACTAGATTTTCTGGCTGTTTCCTTAACGTGTAGTTTGTGTTACAAATTTAGTGATTTTTTGTCCATGTTTAATAGCCTTAAACAGATTGCCTTCTTAGGCCATTGGAAAATGATGGGTTACATGTACCTATGTAATGAACTAACAAGATTAAGGAAGACTTCTTGAACACGTATCAAAACCCTTTCTCCAGCTAAATGAATGACCAAACTAATGGCGTTCCTGCAGTTACCTTCCACAAGTAGGGTACGGGGAGGGTGGAATGTACACAGACCTTACCCCTTCTTGTGTAGGCAGAGAGACTTTTTTTGATTAGTCCCTCGGCTCAAGGCCAGCATAAACACAACATATATGGAGATCACTATTGAATCCTTCATTTCTTGATATACTGTTGCAGTAGATTCTAATTGTCTTCAATGTCCAGTATCGACGAAAATGCTTCTAGTTCTTTCTAATAAGAATAGAACCTAGACTTCTCGTAGTAATTTGGTGCACATTTGAAATACATATTTATATGAGCCTGCAGGTAATTGAAGGACAGGCAGCTGTGCATAGGTGTAAGGCGTACGTTGACATGAAAGAAGAGGATTTCCCAGCATATCCAGCTTGCACAAATGATGAGAACTTACATCAACATGTAGAGAGGGTTGGCAAACTCATGCTTGGTTCGGAGAACGTTGGGGATATTGAAAAGGTCATGGCAGGTGAGGACTTTGCCTTCTATCAACAAGTGATTCCTGGGGTTATCTTTCAAATAGGGATCAGAAATGAGAAGTTGGGCTCTACCCACGCCCCACATTCCCCACACTTCTTTCTTGACGAGGATGTCCTTCCAATTGGAGCAGCAATGCACACAGCCATAGCAGAGATGTATCTGAACGATTACCAACATTCCACTGCAGTTTAGATAATAACATTATTGTTTGATGGTCTCTTGAGTTCCATAAATGTTCCAATTACTCGTTCATTCTGCACATTGTCTATAATACAAAATAAATAAGCAAATCTAAAGCGGTGATGACCATCTGTTCATGTGGCCCATTTCAATTTCTTGA</genome_strand>
        <mrna_strand>AAAAGAGGGTGAAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTGAAGGACAGGCAGCTGTGCATAGGTGTAAGGCGTACGTTGACATGAAAGAAGAGGATTTCCCAGCATATCCAGCTTGCACAAATGATGAGAACTTACATCAACATGTAGAGAGGGTTGGCAAACTCATGCTTGGTTCGGAGAACGTTGGGGATATTGAAAAGGTCATGGCAGGTGAGGACTTTGCCTTCTATCAACAAGTGATTCCTGGGGTTATCTTTCAAATAGGGATCAGAAATGAGAAGTTGGGCTCTACCCACGCCCCACATTCCCCACACTTCTTTCTTGACGAGGATGTCCTTCCAATTGGAGCAGCAATGCACACAGCCATAGCAGAGATGTATCTGAACGATTACCAACATTCCACTGCAGTTTAGATAATAACATTATTGTTTGATGGTCTCTTGAGTTCCATAAATGTTCCAATTACTCGTTCATTCTGCACATTGTCTATAATACAAAATAAATAAGCAAATCTAAAGCGGTGATGACCATCTGTTCATGTGGCCCATTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699100" ref_strand="+" ref_description="SGN-E699100 [FA08CF11]">
      <seq>cccctttgagatcattacagattatgttggtagtccactcactgcatcctctgaggtcattccctttgaactcgacagataagggtgttcataatacttcatttccattgacaaggacacagtcctcttgatcaacacctgttcagcgcccgcagagttggacaagtggtctcttcagggcaccttctttacctcagccatatgtaggatctccacctttgtaccatgcaccatatgagctttcaacttcagccactaatgtatatggacagaggattccacctaactacaaatattcacttcaccagaaaacaactacttttgatgatgaccaactttcccctccattttcatcatcaccatctccacccatatatctttcaggtgcaaatcttgtgcagactcctttgcgttcagaaactgatcctgtcagtatccctcatccattactaggcagaacttccagacacctatctcccaatttgtctgatccacacaggcattatctcccacctatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52118" stop="53231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52412" g_stop="52931" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E699100" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52412" e_stop="52931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACCTGAGATCATTACAGATTATGTTGGTAGTCCACTCACTG-ATCCTCTGAGGTCATTCCCTTTGAACTCGACAGATAAGGGTGTTCATAATACTTCATTTCCATTGAGAAGGACACAGTCCTCTTGTTCAGCACCTGTTCAGCGCCCGCAGAGTTGGACAAGTGGTCTCTTCAGGGCACCTTCTTTACCTCAGCCATATGTAGGATCTCCACCTTTGTACCATGCACCATATGAGCTTTCAACTTCAGTCAGTAATGTATATGGACAGAGGATTCCACCTAACTACAAATATTCAACTCACCAGAAAACAACTAGTTTTGATGATGACCAACTTTCCCCTCCATTTTCATCATCACCATCTCCACCCACATATCTTTCAGGTGCAAATCTTGTGCAGACTCATTTGCGTTCAGAAACTGATCCTGTCAGTATCCCTCATCCATTAATAGGCAGAACTTCCAGACACCTATCTCCTAATTTGTCTGATCCAAACAGGCATTATCTCCCACCTATGTCA</genome_strand>
        <mrna_strand>CCCCTTTGAGATCATTACAGATTATGTTGGTAGTCCACTCACTGCATCCTCTGAGGTCATTCCCTTTGAACTCGACAGATAAGGGTGTTCATAATACTTCATTTCCATTGACAAGGACACAGTCCTCTTGATCAACACCTGTTCAGCGCCCGCAGAGTTGGACAAGTGGTCTCTTCAGGGCACCTTCTTTACCTCAGCCATATGTAGGATCTCCACCTTTGTACCATGCACCATATGAGCTTTCAACTTCAGCCACTAATGTATATGGACAGAGGATTCCACCTAACTACAAATATTCACTTCACCAGAAAACAACTACTTTTGATGATGACCAACTTTCCCCTCCATTTTCATCATCACCATCTCCACCCATATATCTTTCAGGTGCAAATCTTGTGCAGACTCCTTTGCGTTCAGAAACTGATCCTGTCAGTATCCCTCATCCATTACTAGGCAGAACTTCCAGACACCTATCTCCCAATTTGTCTGATCCACACAGGCATTATCTCCCACCTATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371446" ref_strand="-" ref_description="SGN-E371446 [TUS-29-J22]">
      <seq>ggagctttatcaatgaaatcagagttgagaaaatcccaatttcatctccaaattctgctatttgctgtcatctttttgtccattactgtctgtttaaacggtttaaatccactaccttctcatcaagacgacgaagataaatgtcctagaactccatttccgaccgattcttgccccatcaattgcttccgacccgacccggtttgcggtgtcgatggagttacctactggtgtggttgtcccgatgctcactgtgctggtgttcgcgttgccaaattaggaccttgcactgtgggaaatggagggtccggtgcagttccgggtcaggctctgttattgtttcatattgtttggttgatatttcttggtatttctttaatatttgggcttctttagcttgatcatgtctactttgttgctttgcggtttctgtcaagttgatttgttcattatgtggtagaggttagatctgatagtgttattttaacatccattttactggatatatgtttgtattttctgtatatatgaacggaatccacggttggtttcagatttattatttgtttattgttgcgatcaataaaattctaggagattctgatattttgtatcttggtctttattaatttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61754" stop="60522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61454" g_stop="60823" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="633" polyA_stop="647"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E371446" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371446" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61454" e_stop="60823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTTTATCAATGAAATCAGAGTTGAGAAAATCCCAATTTCATCTCCAAATTCTGCTATTTGCTGTCATCTTTTTGTCCATTACTGTCTGTTTAAACGGTTTAAATCCACTACCTTCTCATCAAGACGACGAAGATAAATGCCCTAGAACTCCATTTCCGACCGATTCTTGCCCCATCAATTGCTTCCGACCCGACCCGGTTTGCGGTGTCGATGGAGTTACCTACTGGTGTGGTTGTCCCGATGCTCACTGTGCTGGTGTTCGCGTTGCCAAATTAGGACCTTGCACTGTGGGAAATGGAGGGTCCGGTGCAGTTCCGGGTCAGGCTCTGTTATTGTTTCATATTGTTTGGTTGATATTTCTTGGTATTTCTTTAATATTTGGGCTTCTTTAGCTTGATCATGTCTACTTTGTTGCTTTGCGGTTTCTGTCAAGTTGATTTGTTCATTATGTGGTAGAGGTTAGATCTGATAGTGTTATTTTAACATCCATTTTACTGGATATATGTTTGTATTTTCTGTATATATGAACGGAATCCACGGTTGGTTTCAGATTTATTATTTGTTTATTGTTGCGATCAATAAAATTCTAGGAGATTCTGATATTTTGTATCTTGGTCTTTATTAATTT</genome_strand>
        <mrna_strand>GGAGCTTTATCAATGAAATCAGAGTTGAGAAAATCCCAATTTCATCTCCAAATTCTGCTATTTGCTGTCATCTTTTTGTCCATTACTGTCTGTTTAAACGGTTTAAATCCACTACCTTCTCATCAAGACGACGAAGATAAATGTCCTAGAACTCCATTTCCGACCGATTCTTGCCCCATCAATTGCTTCCGACCCGACCCGGTTTGCGGTGTCGATGGAGTTACCTACTGGTGTGGTTGTCCCGATGCTCACTGTGCTGGTGTTCGCGTTGCCAAATTAGGACCTTGCACTGTGGGAAATGGAGGGTCCGGTGCAGTTCCGGGTCAGGCTCTGTTATTGTTTCATATTGTTTGGTTGATATTTCTTGGTATTTCTTTAATATTTGGGCTTCTTTAGCTTGATCATGTCTACTTTGTTGCTTTGCGGTTTCTGTCAAGTTGATTTGTTCATTATGTGGTAGAGGTTAGATCTGATAGTGTTATTTTAACATCCATTTTACTGGATATATGTTTGTATTTTCTGTATATATGAACGGAATCCACGGTTGGTTTCAGATTTATTATTTGTTTATTGTTGCGATCAATAAAATTCTAGGAGATTCTGATATTTTGTATCTTGGTCTTTATTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280610" ref_strand="-" ref_description="SGN-E280610 [cLER-1-L1]">
      <seq>gtccggtgcagttccgggtcaggctctgttattgtttcatattgtttggttgatatttcttggtatttctttaatatttgggcttctttagcttgatcatgtctactttgttgctttgcggtttctgtcaagttgatttgttcattatgtggtagaggttagatctgatagtgttattttaacatccattttactggatatatgtttgtattttctgtatatatgaacggaatccacggttggtttcagatttattatttgtttattgttgcgatcaataaaattctaggagattctgatattttgtatcttggtctttattaatttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61449" stop="60522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61149" g_stop="60823" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="328" polyA_stop="342"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E280610" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280610" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61149" e_stop="60823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCGGTGCAGTTCCGGGTCAGGCTCTGTTATTGTTTCATATTGTTTGGTTGATATTTCTTGGTATTTCTTTAATATTTGGGCTTCTTTAGCTTGATCATGTCTACTTTGTTGCTTTGCGGTTTCTGTCAAGTTGATTTGTTCATTATGTGGTAGAGGTTAGATCTGATAGTGTTATTTTAACATCCATTTTACTGGATATATGTTTGTATTTTCTGTATATATGAACGGAATCCACGGTTGGTTTCAGATTTATTATTTGTTTATTGTTGCGATCAATAAAATTCTAGGAGATTCTGATATTTTGTATCTTGGTCTTTATTAATTT</genome_strand>
        <mrna_strand>GTCCGGTGCAGTTCCGGGTCAGGCTCTGTTATTGTTTCATATTGTTTGGTTGATATTTCTTGGTATTTCTTTAATATTTGGGCTTCTTTAGCTTGATCATGTCTACTTTGTTGCTTTGCGGTTTCTGTCAAGTTGATTTGTTCATTATGTGGTAGAGGTTAGATCTGATAGTGTTATTTTAACATCCATTTTACTGGATATATGTTTGTATTTTCTGTATATATGAACGGAATCCACGGTTGGTTTCAGATTTATTATTTGTTTATTGTTGCGATCAATAAAATTCTAGGAGATTCTGATATTTTGTATCTTGGTCTTTATTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231035" ref_strand="+" ref_description="SGN-E231035 [cLED-5-D15]">
      <seq>cgaggagaaatatacatagaatatttctcattagttgtctgcagttggacggagtcatacaaggaagataagaaggaagaaatttctccttttgacagcataaaacccccaattttgaatcatttctagggttcacgatttcctcaattagggtttctctgtatcatcaattttggtgaaattgagcttcttagactttagaggagctttatcaatgaaatcagagttgagaaaatcccaatttcatctccaaattctgctatttgctgtcatctttttgtccattactgtctgtttaaacggtttaaatccactaccttctcatcaagacgacgaagataaatgccctagaactccatttccgaccgattcttgccccatcaattgcttccgacccgacccggtttgcggtgtcgatggagttacctactggtgtggttgtcccgatgctcactgtgctggtgttcgcgttgccaaattaggaccttgcactgtgggaaatggagggtccggtgcagttccgggtcaggctctgttattgtttcatattggttggttgatatttcttggtatttctttaatatttgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61956" stop="60766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61656" g_stop="61066" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E231035" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61656" e_stop="61066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGAGAAATATACATAGAATATTTCTCATTAGTTGTCTGCAGTTGGACGGAGTCATACAAGGAAGATAAGAAGGAAGAAATTTCTCCTTTTGACAGCATAAAACCCCCAATTTTGAATCATTTCTAGGGTTCACGATTTCCTCAATTAGGGTTTCTCTGTATCATCAATTTTGGTGAAATTGAGCTTCTTAGACTTTAGAGGAGCTTTATCAATGAAATCAGAGTTGAGAAAATCCCAATTTCATCTCCAAATTCTGCTATTTGCTGTCATCTTTTTGTCCATTACTGTCTGTTTAAACGGTTTAAATCCACTACCTTCTCATCAAGACGACGAAGATAAATGCCCTAGAACTCCATTTCCGACCGATTCTTGCCCCATCAATTGCTTCCGACCCGACCCGGTTTGCGGTGTCGATGGAGTTACCTACTGGTGTGGTTGTCCCGATGCTCACTGTGCTGGTGTTCGCGTTGCCAAATTAGGACCTTGCACTGTGGGAAATGGAGGGTCCGGTGCAGTTCCGGGTCAGGCTCTGTTATTGTTTCATATTGTTTGGTTGATATTTCTTGGTATTTCTTTAATATTTGGGCT</genome_strand>
        <mrna_strand>CGAGGAGAAATATACATAGAATATTTCTCATTAGTTGTCTGCAGTTGGACGGAGTCATACAAGGAAGATAAGAAGGAAGAAATTTCTCCTTTTGACAGCATAAAACCCCCAATTTTGAATCATTTCTAGGGTTCACGATTTCCTCAATTAGGGTTTCTCTGTATCATCAATTTTGGTGAAATTGAGCTTCTTAGACTTTAGAGGAGCTTTATCAATGAAATCAGAGTTGAGAAAATCCCAATTTCATCTCCAAATTCTGCTATTTGCTGTCATCTTTTTGTCCATTACTGTCTGTTTAAACGGTTTAAATCCACTACCTTCTCATCAAGACGACGAAGATAAATGCCCTAGAACTCCATTTCCGACCGATTCTTGCCCCATCAATTGCTTCCGACCCGACCCGGTTTGCGGTGTCGATGGAGTTACCTACTGGTGTGGTTGTCCCGATGCTCACTGTGCTGGTGTTCGCGTTGCCAAATTAGGACCTTGCACTGTGGGAAATGGAGGGTCCGGTGCAGTTCCGGGTCAGGCTCTGTTATTGTTTCATATTGGTTGGTTGATATTTCTTGGTATTTCTTTAATATTTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235619" ref_strand="+" ref_description="SGN-E235619 [cLED-15-G9]">
      <seq>cgaggagaaatatacatagaatatttctcattagttgtctgcagttggacggagtcatacaaggaagataagaaggaagaaatttctccttttgacagcataaaacccccaattttgaatcatttctagggttcacgatttcctcaattagggtttctctgtatcatcaattttggtgaaattgagcttcttagactttagaggagctttatcaatgaaatcagagttgagaaaatcccaatttcatctccaaattctgctatttgctgtcatctttttgtccattactgtctgtttaaacggtttaaatccactaccttctcatcaagacgacgaagataaatgccctagaactccatttccgaccgattcttgccccatcaattgcttccgacccgacccggtttgcggtgtcgatggagttacctactggtgtggttgtcccgatgctcactgtgctggtgttcgcgttgccaaattaggaccttgcactgtgggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61956" stop="60854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61656" g_stop="61154" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E235619" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61656" e_stop="61154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGAGAAATATACATAGAATATTTCTCATTAGTTGTCTGCAGTTGGACGGAGTCATACAAGGAAGATAAGAAGGAAGAAATTTCTCCTTTTGACAGCATAAAACCCCCAATTTTGAATCATTTCTAGGGTTCACGATTTCCTCAATTAGGGTTTCTCTGTATCATCAATTTTGGTGAAATTGAGCTTCTTAGACTTTAGAGGAGCTTTATCAATGAAATCAGAGTTGAGAAAATCCCAATTTCATCTCCAAATTCTGCTATTTGCTGTCATCTTTTTGTCCATTACTGTCTGTTTAAACGGTTTAAATCCACTACCTTCTCATCAAGACGACGAAGATAAATGCCCTAGAACTCCATTTCCGACCGATTCTTGCCCCATCAATTGCTTCCGACCCGACCCGGTTTGCGGTGTCGATGGAGTTACCTACTGGTGTGGTTGTCCCGATGCTCACTGTGCTGGTGTTCGCGTTGCCAAATTAGGACCTTGCACTGTGGGAAATG</genome_strand>
        <mrna_strand>CGAGGAGAAATATACATAGAATATTTCTCATTAGTTGTCTGCAGTTGGACGGAGTCATACAAGGAAGATAAGAAGGAAGAAATTTCTCCTTTTGACAGCATAAAACCCCCAATTTTGAATCATTTCTAGGGTTCACGATTTCCTCAATTAGGGTTTCTCTGTATCATCAATTTTGGTGAAATTGAGCTTCTTAGACTTTAGAGGAGCTTTATCAATGAAATCAGAGTTGAGAAAATCCCAATTTCATCTCCAAATTCTGCTATTTGCTGTCATCTTTTTGTCCATTACTGTCTGTTTAAACGGTTTAAATCCACTACCTTCTCATCAAGACGACGAAGATAAATGCCCTAGAACTCCATTTCCGACCGATTCTTGCCCCATCAATTGCTTCCGACCCGACCCGGTTTGCGGTGTCGATGGAGTTACCTACTGGTGTGGTTGTCCCGATGCTCACTGTGCTGGTGTTCGCGTTGCCAAATTAGGACCTTGCACTGTGGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242763" ref_strand="+" ref_description="SGN-E242763 [cLED-31-K8]">
      <seq>cgaggagaaatatacatagaatatttctcattagttgtctgcagttggacggagtcatacaaggaagataagaaggaagaaatttctccttttgacagcataaaacccccaattttgaatcatttctagggttcacgatttcctcaattagggtttctctgtatcatcaattttggtgaaattgagcttcttagactttagaggagctttatcaatgaaatcagagttgagaaaatcccaatttcatctccaaattctgctatttgctgtcatctttttgtccattactgtctgtttaaacggtttaaatccactaccttctcatcaagacgacgaagataaatgccctagaactccatttccgaccgattcttgccccatcaattgcttccgacccgacccggtttgcggtgtcgatggagttacctactggtgtggttgtcccgatgctcactgtgctggtgttcgcgttgccaaattaggaccttgcactgtgggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61956" stop="60855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61656" g_stop="61155" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E242763" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61656" e_stop="61155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGAGAAATATACATAGAATATTTCTCATTAGTTGTCTGCAGTTGGACGGAGTCATACAAGGAAGATAAGAAGGAAGAAATTTCTCCTTTTGACAGCATAAAACCCCCAATTTTGAATCATTTCTAGGGTTCACGATTTCCTCAATTAGGGTTTCTCTGTATCATCAATTTTGGTGAAATTGAGCTTCTTAGACTTTAGAGGAGCTTTATCAATGAAATCAGAGTTGAGAAAATCCCAATTTCATCTCCAAATTCTGCTATTTGCTGTCATCTTTTTGTCCATTACTGTCTGTTTAAACGGTTTAAATCCACTACCTTCTCATCAAGACGACGAAGATAAATGCCCTAGAACTCCATTTCCGACCGATTCTTGCCCCATCAATTGCTTCCGACCCGACCCGGTTTGCGGTGTCGATGGAGTTACCTACTGGTGTGGTTGTCCCGATGCTCACTGTGCTGGTGTTCGCGTTGCCAAATTAGGACCTTGCACTGTGGGAAAT</genome_strand>
        <mrna_strand>CGAGGAGAAATATACATAGAATATTTCTCATTAGTTGTCTGCAGTTGGACGGAGTCATACAAGGAAGATAAGAAGGAAGAAATTTCTCCTTTTGACAGCATAAAACCCCCAATTTTGAATCATTTCTAGGGTTCACGATTTCCTCAATTAGGGTTTCTCTGTATCATCAATTTTGGTGAAATTGAGCTTCTTAGACTTTAGAGGAGCTTTATCAATGAAATCAGAGTTGAGAAAATCCCAATTTCATCTCCAAATTCTGCTATTTGCTGTCATCTTTTTGTCCATTACTGTCTGTTTAAACGGTTTAAATCCACTACCTTCTCATCAAGACGACGAAGATAAATGCCCTAGAACTCCATTTCCGACCGATTCTTGCCCCATCAATTGCTTCCGACCCGACCCGGTTTGCGGTGTCGATGGAGTTACCTACTGGTGTGGTTGTCCCGATGCTCACTGTGCTGGTGTTCGCGTTGCCAAATTAGGACCTTGCACTGTGGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231538" ref_strand="+" ref_description="SGN-E231538 [cLED-4-J21]">
      <seq>cgaggagaaatatacatagaatatttctcattagttgtctgcagttggacggagtcatacaaggaagataagaaggaagaaatttctccttttgacagcataaaacccccaattttgaatcatttctagggttcacgatttcctcaattagggtttctctgtatcatcaattttggtgaaattgagcttcttagactttagaggagctttatcaatgaaatcagagttgagaaaatcccaatttcatctccaaattctgctatttgctgtcatctttttgtccattactgtctgtttaaacggtttaaatccactaccttctcatcaagacgacgaagataaatgccctagaactccatttccgaccgattcttgccccatcaattgcttccgacccgacccggtttgcggtgtcgatggagttacctactggtgtggtgtcccgatgctcactgtgctggtgttcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61956" stop="60887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61656" g_stop="61187" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E231538" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61656" e_stop="61187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGAGAAATATACATAGAATATTTCTCATTAGTTGTCTGCAGTTGGACGGAGTCATACAAGGAAGATAAGAAGGAAGAAATTTCTCCTTTTGACAGCATAAAACCCCCAATTTTGAATCATTTCTAGGGTTCACGATTTCCTCAATTAGGGTTTCTCTGTATCATCAATTTTGGTGAAATTGAGCTTCTTAGACTTTAGAGGAGCTTTATCAATGAAATCAGAGTTGAGAAAATCCCAATTTCATCTCCAAATTCTGCTATTTGCTGTCATCTTTTTGTCCATTACTGTCTGTTTAAACGGTTTAAATCCACTACCTTCTCATCAAGACGACGAAGATAAATGCCCTAGAACTCCATTTCCGACCGATTCTTGCCCCATCAATTGCTTCCGACCCGACCCGGTTTGCGGTGTCGATGGAGTTACCTACTGGTGTGGTTGTCCCGATGCTCACTGTGCTGGTGTTCGCG</genome_strand>
        <mrna_strand>CGAGGAGAAATATACATAGAATATTTCTCATTAGTTGTCTGCAGTTGGACGGAGTCATACAAGGAAGATAAGAAGGAAGAAATTTCTCCTTTTGACAGCATAAAACCCCCAATTTTGAATCATTTCTAGGGTTCACGATTTCCTCAATTAGGGTTTCTCTGTATCATCAATTTTGGTGAAATTGAGCTTCTTAGACTTTAGAGGAGCTTTATCAATGAAATCAGAGTTGAGAAAATCCCAATTTCATCTCCAAATTCTGCTATTTGCTGTCATCTTTTTGTCCATTACTGTCTGTTTAAACGGTTTAAATCCACTACCTTCTCATCAAGACGACGAAGATAAATGCCCTAGAACTCCATTTCCGACCGATTCTTGCCCCATCAATTGCTTCCGACCCGACCCGGTTTGCGGTGTCGATGGAGTTACCTACTGGTGTGG-TGTCCCGATGCTCACTGTGCTGGTGTTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241445" ref_strand="+" ref_description="SGN-E241445 [cLED-28-C5]">
      <seq>cgaggagaaatatacatagaatatttctcattagttgtctgcagttggacggagtcatacaaggaagataagaaggaagaaatttctccttttgacagcataaaacccccaattttgaatcatttctagggttcacgatttcctcaattagggtttctctgtatcatcaattttggtgaaattgagcttcttagactttagaggagctttatcaatgaaatcagagttgagaaaatcccaatttcatctccaaattctgctatttgctgtcatctttttgtccattactgtctgtttaaacggtttaaatccactaccttctcatcaagacgacgaagataaatgccctagaactccatttccgaccgattcttgccccatcaattgcttccgacccgacccggtttgcggtgtcgatggagttacctactggtgtggttgtcccgatgctcactgtgctggtgttcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61956" stop="60887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61656" g_stop="61187" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E241445" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61656" e_stop="61187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGAGAAATATACATAGAATATTTCTCATTAGTTGTCTGCAGTTGGACGGAGTCATACAAGGAAGATAAGAAGGAAGAAATTTCTCCTTTTGACAGCATAAAACCCCCAATTTTGAATCATTTCTAGGGTTCACGATTTCCTCAATTAGGGTTTCTCTGTATCATCAATTTTGGTGAAATTGAGCTTCTTAGACTTTAGAGGAGCTTTATCAATGAAATCAGAGTTGAGAAAATCCCAATTTCATCTCCAAATTCTGCTATTTGCTGTCATCTTTTTGTCCATTACTGTCTGTTTAAACGGTTTAAATCCACTACCTTCTCATCAAGACGACGAAGATAAATGCCCTAGAACTCCATTTCCGACCGATTCTTGCCCCATCAATTGCTTCCGACCCGACCCGGTTTGCGGTGTCGATGGAGTTACCTACTGGTGTGGTTGTCCCGATGCTCACTGTGCTGGTGTTCGCG</genome_strand>
        <mrna_strand>CGAGGAGAAATATACATAGAATATTTCTCATTAGTTGTCTGCAGTTGGACGGAGTCATACAAGGAAGATAAGAAGGAAGAAATTTCTCCTTTTGACAGCATAAAACCCCCAATTTTGAATCATTTCTAGGGTTCACGATTTCCTCAATTAGGGTTTCTCTGTATCATCAATTTTGGTGAAATTGAGCTTCTTAGACTTTAGAGGAGCTTTATCAATGAAATCAGAGTTGAGAAAATCCCAATTTCATCTCCAAATTCTGCTATTTGCTGTCATCTTTTTGTCCATTACTGTCTGTTTAAACGGTTTAAATCCACTACCTTCTCATCAAGACGACGAAGATAAATGCCCTAGAACTCCATTTCCGACCGATTCTTGCCCCATCAATTGCTTCCGACCCGACCCGGTTTGCGGTGTCGATGGAGTTACCTACTGGTGTGGTTGTCCCGATGCTCACTGTGCTGGTGTTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241288" ref_strand="+" ref_description="SGN-E241288 [cLED-26-L17]">
      <seq>cgaggagaaatatacatagaatatttctcattagttgtctgcagttggacggagtcatacaaggaagataagaaggaagaaatttctccttttgacagcataaaacccccaattttgaatcatttctagggttcacgatttcctcaattagggtttctctgtatcatcaattttggtgaaattgagcttcttagactttagaggagctttatcaatgaaatcagagttgagaaaatcccaatttcatctccaaattctgctatttgctgtcatctttttgtccattactgtctgtttaaacggtttaaatccactaccttctcatcaagacgacgaagataaatgccctagaactccatttccgaccgattcttgccccatcaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61956" stop="60970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61656" g_stop="61270" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E241288" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61656" e_stop="61270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGAGAAATATACATAGAATATTTCTCATTAGTTGTCTGCAGTTGGACGGAGTCATACAAGGAAGATAAGAAGGAAGAAATTTCTCCTTTTGACAGCATAAAACCCCCAATTTTGAATCATTTCTAGGGTTCACGATTTCCTCAATTAGGGTTTCTCTGTATCATCAATTTTGGTGAAATTGAGCTTCTTAGACTTTAGAGGAGCTTTATCAATGAAATCAGAGTTGAGAAAATCCCAATTTCATCTCCAAATTCTGCTATTTGCTGTCATCTTTTTGTCCATTACTGTCTGTTTAAACGGTTTAAATCCACTACCTTCTCATCAAGACGACGAAGATAAATGCCCTAGAACTCCATTTCCGACCGATTCTTGCCCCATCAATTG</genome_strand>
        <mrna_strand>CGAGGAGAAATATACATAGAATATTTCTCATTAGTTGTCTGCAGTTGGACGGAGTCATACAAGGAAGATAAGAAGGAAGAAATTTCTCCTTTTGACAGCATAAAACCCCCAATTTTGAATCATTTCTAGGGTTCACGATTTCCTCAATTAGGGTTTCTCTGTATCATCAATTTTGGTGAAATTGAGCTTCTTAGACTTTAGAGGAGCTTTATCAATGAAATCAGAGTTGAGAAAATCCCAATTTCATCTCCAAATTCTGCTATTTGCTGTCATCTTTTTGTCCATTACTGTCTGTTTAAACGGTTTAAATCCACTACCTTCTCATCAAGACGACGAAGATAAATGCCCTAGAACTCCATTTCCGACCGATTCTTGCCCCATCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240807" ref_strand="+" ref_description="SGN-E240807 [cLED-24-F7]">
      <seq>cgaggagaaatatacatagaatatttctcattagttgtctgcagttggacggagtcatacaaggaagataagaaggaagaaatttctccttttgacagcataaaacccccaattttgaatcatttctagggttcacgatttcctcaattagggtttctctgtatcatcaattttggtgaaattgagcttcttagactttagaggagctttatcaatgaaatcagagttgagaaaatcccaatttcatctccaaattctgctatttgctgtcatctttttgtccattactgtctgtttaaacggtttaaatccactaccttctcatcaagacgacgaagataaatgccctagaactccatttccgaccgattcttgccccatcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61956" stop="60971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61656" g_stop="61271" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E240807" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61656" e_stop="61271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGAGAAATATACATAGAATATTTCTCATTAGTTGTCTGCAGTTGGACGGAGTCATACAAGGAAGATAAGAAGGAAGAAATTTCTCCTTTTGACAGCATAAAACCCCCAATTTTGAATCATTTCTAGGGTTCACGATTTCCTCAATTAGGGTTTCTCTGTATCATCAATTTTGGTGAAATTGAGCTTCTTAGACTTTAGAGGAGCTTTATCAATGAAATCAGAGTTGAGAAAATCCCAATTTCATCTCCAAATTCTGCTATTTGCTGTCATCTTTTTGTCCATTACTGTCTGTTTAAACGGTTTAAATCCACTACCTTCTCATCAAGACGACGAAGATAAATGCCCTAGAACTCCATTTCCGACCGATTCTTGCCCCATCAATT</genome_strand>
        <mrna_strand>CGAGGAGAAATATACATAGAATATTTCTCATTAGTTGTCTGCAGTTGGACGGAGTCATACAAGGAAGATAAGAAGGAAGAAATTTCTCCTTTTGACAGCATAAAACCCCCAATTTTGAATCATTTCTAGGGTTCACGATTTCCTCAATTAGGGTTTCTCTGTATCATCAATTTTGGTGAAATTGAGCTTCTTAGACTTTAGAGGAGCTTTATCAATGAAATCAGAGTTGAGAAAATCCCAATTTCATCTCCAAATTCTGCTATTTGCTGTCATCTTTTTGTCCATTACTGTCTGTTTAAACGGTTTAAATCCACTACCTTCTCATCAAGACGACGAAGATAAATGCCCTAGAACTCCATTTCCGACCGATTCTTGCCCCATCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240865" ref_strand="+" ref_description="SGN-E240865 [cLED-24-L18]">
      <seq>cgaggagaaatatacatagaatatttctcattagttgtctgcagttggacggagtcatacaaggaagataagaaggaagaaatttctccttttgacagcataaaacccccaattttgaatcatttctagggttcacgatttcctcaattagggtttctctgtatcatcaattttggtgaaattgagcttcttagactttagaggagctttatcaatgaaatcagagttgagaaaatcccaatttcatctccaaattctgctatttgctgtcatctttttgtccattactgtctgtttaaacggtttaaatccactaccttctcatcaagacgacgaagataaatgccctagaactccatttccgaccgattcttgccccatcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61956" stop="60971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61656" g_stop="61271" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E240865" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61656" e_stop="61271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGAGAAATATACATAGAATATTTCTCATTAGTTGTCTGCAGTTGGACGGAGTCATACAAGGAAGATAAGAAGGAAGAAATTTCTCCTTTTGACAGCATAAAACCCCCAATTTTGAATCATTTCTAGGGTTCACGATTTCCTCAATTAGGGTTTCTCTGTATCATCAATTTTGGTGAAATTGAGCTTCTTAGACTTTAGAGGAGCTTTATCAATGAAATCAGAGTTGAGAAAATCCCAATTTCATCTCCAAATTCTGCTATTTGCTGTCATCTTTTTGTCCATTACTGTCTGTTTAAACGGTTTAAATCCACTACCTTCTCATCAAGACGACGAAGATAAATGCCCTAGAACTCCATTTCCGACCGATTCTTGCCCCATCAATT</genome_strand>
        <mrna_strand>CGAGGAGAAATATACATAGAATATTTCTCATTAGTTGTCTGCAGTTGGACGGAGTCATACAAGGAAGATAAGAAGGAAGAAATTTCTCCTTTTGACAGCATAAAACCCCCAATTTTGAATCATTTCTAGGGTTCACGATTTCCTCAATTAGGGTTTCTCTGTATCATCAATTTTGGTGAAATTGAGCTTCTTAGACTTTAGAGGAGCTTTATCAATGAAATCAGAGTTGAGAAAATCCCAATTTCATCTCCAAATTCTGCTATTTGCTGTCATCTTTTTGTCCATTACTGTCTGTTTAAACGGTTTAAATCCACTACCTTCTCATCAAGACGACGAAGATAAATGCCCTAGAACTCCATTTCCGACCGATTCTTGCCCCATCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231709" ref_strand="+" ref_description="SGN-E231709 [cLED-4-H15]">
      <seq>cgaggagaaatatacatagaatatttctcattagttgtctgcagttggacggagtcatacaaggaagataagaaggaagaaatttctccttttgacagcataaaacccccaattttgaatcatttctagggttcacgatttcctcaattagggtttctctgtatcatcaattttggtgaaattgagcttcttagactttagaggagctttatcaatgaaatcagagttgagaaaatcccaatttcatctccaaattctgctatttgctgtcatctttttgtccattactgtctgtttaaacggtttaaatccactaccttctcatcaagacgacgaagataaatgccctagaactccatttccgaccgattcttgccccatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61956" stop="60973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61656" g_stop="61273" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E231709" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61656" e_stop="61273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGAGAAATATACATAGAATATTTCTCATTAGTTGTCTGCAGTTGGACGGAGTCATACAAGGAAGATAAGAAGGAAGAAATTTCTCCTTTTGACAGCATAAAACCCCCAATTTTGAATCATTTCTAGGGTTCACGATTTCCTCAATTAGGGTTTCTCTGTATCATCAATTTTGGTGAAATTGAGCTTCTTAGACTTTAGAGGAGCTTTATCAATGAAATCAGAGTTGAGAAAATCCCAATTTCATCTCCAAATTCTGCTATTTGCTGTCATCTTTTTGTCCATTACTGTCTGTTTAAACGGTTTAAATCCACTACCTTCTCATCAAGACGACGAAGATAAATGCCCTAGAACTCCATTTCCGACCGATTCTTGCCCCATCAA</genome_strand>
        <mrna_strand>CGAGGAGAAATATACATAGAATATTTCTCATTAGTTGTCTGCAGTTGGACGGAGTCATACAAGGAAGATAAGAAGGAAGAAATTTCTCCTTTTGACAGCATAAAACCCCCAATTTTGAATCATTTCTAGGGTTCACGATTTCCTCAATTAGGGTTTCTCTGTATCATCAATTTTGGTGAAATTGAGCTTCTTAGACTTTAGAGGAGCTTTATCAATGAAATCAGAGTTGAGAAAATCCCAATTTCATCTCCAAATTCTGCTATTTGCTGTCATCTTTTTGTCCATTACTGTCTGTTTAAACGGTTTAAATCCACTACCTTCTCATCAAGACGACGAAGATAAATGCCCTAGAACTCCATTTCCGACCGATTCTTGCCCCATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241864" ref_strand="+" ref_description="SGN-E241864 [cLED-27-K10]">
      <seq>ccaggagaaatatacatagaatatttctcattagttgtctgcagctggacggagtcatacaaggaagataacaaggaagaaatttctccttttgacagcataaaacccccaattttgaatcatttctagggttcacgatttcctcaattagggtttctctgtatcatcaattttggtgaaattgagcttcttagactttagaggagctttatcaatgaaatcagagttgagaaaatcccaatttcatctccaaattctgctatttgctgtcatctttttgtccattactgtctgtttaaacggattaaatccactaccttctcatcaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61956" stop="61027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61656" g_stop="61327" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E241864" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61656" e_stop="61327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGAGAAATATACATAGAATATTTCTCATTAGTTGTCTGCAGTTGGACGGAGTCATACAAGGAAGATAAGAAGGAAGAAATTTCTCCTTTTGACAGCATAAAACCCCCAATTTTGAATCATTTCTAGGGTTCACGATTTCCTCAATTAGGGTTTCTCTGTATCATCAATTTTGGTGAAATTGAGCTTCTTAGACTTTAGAGGAGCTTTATCAATGAAATCAGAGTTGAGAAAATCCCAATTTCATCTCCAAATTCTGCTATTTGCTGTCATCTTTTTGTCCATTACTGTCTGTTTAAACGGTTTAAATCCACTACCTTCTCATCAAGA</genome_strand>
        <mrna_strand>CCAGGAGAAATATACATAGAATATTTCTCATTAGTTGTCTGCAGCTGGACGGAGTCATACAAGGAAGATAACAAGGAAGAAATTTCTCCTTTTGACAGCATAAAACCCCCAATTTTGAATCATTTCTAGGGTTCACGATTTCCTCAATTAGGGTTTCTCTGTATCATCAATTTTGGTGAAATTGAGCTTCTTAGACTTTAGAGGAGCTTTATCAATGAAATCAGAGTTGAGAAAATCCCAATTTCATCTCCAAATTCTGCTATTTGCTGTCATCTTTTTGTCCATTACTGTCTGTTTAAACGGATTAAATCCACTACCTTCTCATCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244717" ref_strand="+" ref_description="SGN-E244717 [cLED-38-O24]">
      <seq>cgaggagaaatatacatataatatttctcattagttgtctgcagttggacggagtcatacaaggaagattagaaggaagaaatttctccttttgacagcataaaacccccaatttgtgaatgatttctagggttcacgatttcctcaattagggtttctctgtatcatgaattttggtgaaattgagcttcttagactttagaggagctttatcaatgaaatcagagttgagaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61956" stop="61120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61656" g_stop="61420" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E244717" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61656" e_stop="61420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGAGAAATATACATAGAATATTTCTCATTAGTTGTCTGCAGTTGGACGGAGTCATACAAGGAAGATAAGAAGGAAGAAATTTCTCCTTTTGACAGCATAAAACCCCCAATTT-TGAATCATTTCTAGGGTTCACGATTTCCTCAATTAGGGTTTCTCTGTATCATCAATTTTGGTGAAATTGAGCTTCTTAGACTTTAGAGGAGCTTTATCAATGAAATCAGAGTTGAGAAAATC</genome_strand>
        <mrna_strand>CGAGGAGAAATATACATATAATATTTCTCATTAGTTGTCTGCAGTTGGACGGAGTCATACAAGGAAGATTAGAAGGAAGAAATTTCTCCTTTTGACAGCATAAAACCCCCAATTTGTGAATGATTTCTAGGGTTCACGATTTCCTCAATTAGGGTTTCTCTGTATCATGAATTTTGGTGAAATTGAGCTTCTTAGACTTTAGAGGAGCTTTATCAATGAAATCAGAGTTGAGAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343303" ref_strand="+" ref_description="SGN-E343303 [cTOF-17-B24]">
      <seq>ttcttttcaatagtgttggtaagtcaagcaagtcacagacggaatcctcaggtcccgagcccatgatcgaaagctgagaagttcatattactatcaaattggatgtagaccaatttggtgcaatttctaggtttctttttgcagttgactatatacatctttgactctatttgtgcagcctacaaagaggtgatagtttacgatgattggctctcttagatatcatgacttttgctgttcaatgttatggaagatttcgtcaagtctttcacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68003" stop="68876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68303" g_stop="68576" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68577" i_stop="68639" i_length="63">
            <donor d_prob="0.132" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68640" g_stop="68647" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="282" r_length="8" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E343303" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68303" e_stop="68576"/>
          <exon e_start="68640" e_stop="68647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCAATAGTGTTGGTAAGTCAAGCAAGTCACAGACGGAATCCTCAGGTCCCGAGCCCATGATCGAAAGCTGAGAAGTTCATATTACTATCAAATTGGATGTAGACCAATTTGGTGCAATTTCTAGGTTTCTTTTTGCAGTTGACTATATACATCTTTGACTCTATTTGTGCAGCCTACAAAGAGGTGATAGTTTACGATGATTGGCTCTCTTAGATATCATGACTTTTGCTGTTCAATGTTATGGAAGATTTCGTCAAGTCTTTCACAAGTTCTTTTCCTTTTGTTAATTATAAGTTCAGTTAATCGACATGTTTGGTTTGGTGCTTCAAAGGAAAAATC</genome_strand>
        <mrna_strand>TTCTTTTCAATAGTGTTGGTAAGTCAAGCAAGTCACAGACGGAATCCTCAGGTCCCGAGCCCATGATCGAAAGCTGAGAAGTTCATATTACTATCAAATTGGATGTAGACCAATTTGGTGCAATTTCTAGGTTTCTTTTTGCAGTTGACTATATACATCTTTGACTCTATTTGTGCAGCCTACAAAGAGGTGATAGTTTACGATGATTGGCTCTCTTAGATATCATGACTTTTGCTGTTCAATGTTATGGAAGATTTCGTCAAGTCTTTCACAA...............................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361831" ref_strand="+" ref_description="SGN-E361831 [cLPP-12-D15]">
      <seq>aacagaggatactaaaattgaggaagtaagcacagagacaaaggctgttgttgaagcagaaaaggaaacagcagaggaagtcaaagttgaggctgtgaaagaagagcccaaagagcagcagccagctgaggaaaaaaaagaggctgaaactgttgcccagtaaataataactctccacttatcaagtaaataatgtatacataaataatgggctttgagatttaattttcaatcatatctttaggcttaatcaagttgattgatttgttgaggctcctttactttcatcaaaacaacaacaatagtaacagaaaaattctttgtatttctaattcgcctttataaatattcaaaggattctgcgttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78109" stop="77139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77809" g_stop="77430" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E361831" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77809" e_stop="77430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGAGGATACTAAAATTGAGGAAGCAAGCACAGAGACAAAGGCTGTTGTTGAAGCAGAAAAGGAAACAGCAGAGGAAGTCAAAGTTGAGGCTGTGAAAGAAGAGCCCAAAGAGCAGCAGCCAGCTGAGTAAAAAAAAAGAGGCTGAAACTGTTGCCCAGTAAATAATAACTCTCTACTTATCAAGTAAATAATGTATACATAAAATAATGGGCTTTGAGATTTAATTTTCAATCATATCTTTAGGCTTAATCAAGTTGATTCATTTGTTGAGGCTCCTTTACTTTCATCAAAACAACAACAATAGTAACACAAAAATTCTTTGTATTTCTAATTCGCCTTTATAAATATTCAAAGGATTCTACGTTCTATTGTCAGAA</genome_strand>
        <mrna_strand>AACAGAGGATACTAAAATTGAGGAAGTAAGCACAGAGACAAAGGCTGTTGTTGAAGCAGAAAAGGAAACAGCAGAGGAAGTCAAAGTTGAGGCTGTGAAAGAAGAGCCCAAAGAGCAGCAGCCAGCTGAG-GAAAAAAAAGAGGCTGAAACTGTTGCCCAGTAAATAATAACTCTCCACTTATCAAGTAAATAATGTATACAT-AAATAATGGGCTTTGAGATTTAATTTTCAATCATATCTTTAGGCTTAATCAAGTTGATTGATTTGTTGAGGCTCCTTTACTTTCATCAAAACAACAACAATAGTAACAGAAAAATTCTTTGTATTTCTAATTCGCCTTTATAAATATTCAAAGGATTCTGCGTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374071" ref_strand="+" ref_description="SGN-E374071 [TUS-33-O7](-)">
      <seq>gagcctttgattgatgtgtcaacagaggatactaaaattgaggaagtaagcacagagacaaaggctgttgttgaagcagaaaaggaaacagcagaggaagtcaaagttgaggctgtgaaagaagagcccaaagagcagcagccagctgaggaaaaaaaagaggctgaaactgttgcccagtaaataataactctccacttatcaagtaaataatgtatacataaataatgggctttgagatttaattttcaatcatatctttaggcttaatcaagttgattgatttgttgaggctcctttactttcatcaaaacaacaacaatagtaacagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78129" stop="77192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77829" g_stop="77488" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E374071" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77829" e_stop="77488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCCTTTGATTGATGTGTCAACAGAGGATACTAAAATTGAGGAAGCAAGCACAGAGACAAAGGCTGTTGTTGAAGCAGAAAAGGAAACAGCAGAGGAAGTCAAAGTTGAGGCTGTGAAAGAAGAGCCCAAAGAGCAGCAGCCAGCTGAGTAAAAAAAAAGAGGCTGAAACTGTTGCCCAGTAAATAATAACTCTCTACTTATCAAGTAAATAATGTATACATAAAATAATGGGCTTTGAGATTTAATTTTCAATCATATCTTTAGGCTTAATCAAGTTGATTCATTTGTTGAGGCTCCTTTACTTTCATCAAAACAACAACAATAGTAACACAAAAATTCT</genome_strand>
        <mrna_strand>GAGCCTTTGATTGATGTGTCAACAGAGGATACTAAAATTGAGGAAGTAAGCACAGAGACAAAGGCTGTTGTTGAAGCAGAAAAGGAAACAGCAGAGGAAGTCAAAGTTGAGGCTGTGAAAGAAGAGCCCAAAGAGCAGCAGCCAGCTGAG-GAAAAAAAAGAGGCTGAAACTGTTGCCCAGTAAATAATAACTCTCCACTTATCAAGTAAATAATGTATACAT-AAATAATGGGCTTTGAGATTTAATTTTCAATCATATCTTTAGGCTTAATCAAGTTGATTGATTTGTTGAGGCTCCTTTACTTTCATCAAAACAACAACAATAGTAACAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360453" ref_strand="+" ref_description="SGN-E360453 [cLPP-8-M15]">
      <seq>gccttacaactttaattcctcaatattaatattactctctcaagtttgatttcctgtccatctctgtcgctcacctctaacaaacatgggagcctgtgcgagcagacctaaggatttggacagggacttagcccctgcccctgttcccgttgaggaatctgtcagccctaaggctgacgctgttcctcaggagaaaaatggagaggaatcaaagaaggaagagcctttgattgatgtgtcaacagaggatactaaaattgaggaagtaagcacagagacaaaggctgttgttgaagcagaaaaggaaacagcagaggaagtcaaagttgaggctgtgaaagaagagcccaaagagcagcagccagctgaggaaaaaaaagaggctgaaactgttgcccagtaaataataactctccacttatcaagtaaataatgtatacataaataatgggctttgagatttaattttcaatcatatctttaggcttaatcaagttgattgatttgttgaggctcctttactttcatcaaaacaacaacaatagtaacagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79199" stop="77192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78899" g_stop="78710" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78709" i_stop="77860" i_length="850">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77859" g_stop="77504" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="544" r_length="354" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="561"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E360453" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78899" e_stop="78710"/>
          <exon e_start="77859" e_stop="77504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTACAACTTTAATTCCTCAATATTAATATTACTCTCTCAAGTTTGATTTCCTGTCCATCTCTCTCGCTCACCTCTAACAAACATGGGAGCTTGTGCGAGCAGACCTAAGGATTTGGACAGGGACTTAGCCCCTGCCCCTGTTCCCGTCGAGGAATCTGTCAGCCCTAAGGCTGACGCTGTTCCTCAGGTATCTTTTTCGTATTAATTCTCTTGCATTTTGCTACTTGAGTATACATATATATATATATATGGACTTCATTGTTTTCTGCTCATAGGCGGATTCAGAATTTAAATATAATGAGTCATGAACGTATGCAATCTAATATGTTTGTCGTATTTCTTTTTTAATTTGTTTTTTTTTTAAAAAAAAGACCTCTTTCCTATTTTGAAAACTCTTTAATTTCAATTTTTCACCTGACATGCTTAAAAGTATTTTGGTACAGTCTCCATACCTTTAGTTTAAGAACACAAAATTCAGAATCAAACAAACAAATTGAAAAGGAGATAGTAAATAAATATACATGTTCTTTTTCATTTATTTTTTTTTAAAAAAATATATATATAGTAAGAATTATCACAGTAAGATAAGATTCAGGTCATGAAAATCGCACTCTACAGAAATACAATAGACTCAATGTAGTTATGTCATACGAGGAGCTAAGTGCACTGAGTTACCCTTATATACATCATTGAGGCAAAAGGGTTGATTTCTCGTTCAACTATATGTTTGACATTTTTTTTTTTTTGAAATGTACAATTTCTAAGTATGAGTTACTGCAACAAAAACAATCTTTAGCGACAATAAATATTAACATTAATGAAGAGTGTTTATCGGCATTAGTTAAGTGTCATTAGAATCAATGTCGCTAAAGGCTTTAGAGACATATACAAAAGTGCTTTAGCAGCAATTAACAATTAATTTTTCCGCTAATGATCATTTTTGATGTAGTGATTAAATCCTTTTTATCATGTTTCGAAATCACATATATGAAAATAATACTCTTGAAACATCAATATATATTTTTTTATGAAATTAGGAGAAAAATGGAGAGGAATCAAAGAAGGAAGAGCCTTTGATTGATGTGTCAACAGAGGATACTAAAATTGAGGAAGCAAGCACAGAGACAAAGGCTGTTGTTGAAGCAGAAAAGGAAACAGCAGAGGAAGTCAAAGTTGAGGCTGTGAAAGAAGAGCCCAAAGAGCAGCAGCCAGCTGAGTAAAAAAAAAGAGGCTGAAACTGTTGCCCAGTAAATAATAACTCTCTACTTATCAAGTAAATAATGTATACATAAAATAATGGGCTTTGAGATTTAATTTTCAATCATATCTTTAGGCTTAATCAAGTTGATTCATTTGTTGAGGCTCCTTTACTTTCATCAAAACAACAACAATA</genome_strand>
        <mrna_strand>GCCTTACAACTTTAATTCCTCAATATTAATATTACTCTCTCAAGTTTGATTTCCTGTCCATCTCTGTCGCTCACCTCTAACAAACATGGGAGCCTGTGCGAGCAGACCTAAGGATTTGGACAGGGACTTAGCCCCTGCCCCTGTTCCCGTTGAGGAATCTGTCAGCCCTAAGGCTGACGCTGTTCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAATGGAGAGGAATCAAAGAAGGAAGAGCCTTTGATTGATGTGTCAACAGAGGATACTAAAATTGAGGAAGTAAGCACAGAGACAAAGGCTGTTGTTGAAGCAGAAAAGGAAACAGCAGAGGAAGTCAAAGTTGAGGCTGTGAAAGAAGAGCCCAAAGAGCAGCAGCCAGCTGAG-GAAAAAAAAGAGGCTGAAACTGTTGCCCAGTAAATAATAACTCTCCACTTATCAAGTAAATAATGTATACAT-AAATAATGGGCTTTGAGATTTAATTTTCAATCATATCTTTAGGCTTAATCAAGTTGATTGATTTGTTGAGGCTCCTTTACTTTCATCAAAACAACAACAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363621" ref_strand="+" ref_description="SGN-E363621 [cLPP-3-M4]">
      <seq>ctttaattcctcaatattaatattacctctctcaagtttgatttcctgtccatctctgtcgctcaccctctaaccaaacatgggagccctgtgccgagccagacctaaggatttggacagggaccttagcccctgcccctgttcccgttgaggaatctgtcagcccctaaggctgaccgcctgttcctcaggagaaaaatggagaggaatcaaagaaggaagagccctttgattgatgtgtcaaccagaggatacctaaaattgaggaagtaagcacagagaccaaggctgttgttgaagcagaaaaggaaaccagcagaggaagtcaaagttgaggctgtgaaagaagagcccaaagagccagcagccagctgaggaaaaaaaagaggctgaaactgttgccccagtaaataataacctctccacttatcaagtaaataatgtataccataaataatgggctttgagatttaattttcaatcatatctttaggcttaatcaagttgattgatttgttgaggctcctttactttcatcaaaacaaccaccatagtaacagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79190" stop="77192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78890" g_stop="78710" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.873"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78709" i_stop="77860" i_length="850">
            <donor d_prob="1.000" d_score="0.85"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77859" g_stop="77504" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="553" r_length="362" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="570"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E363621" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78890" e_stop="78710"/>
          <exon e_start="77859" e_stop="77504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAATTCCTCAATATTAATATTA-CTCTCTCAAGTTTGATTTCCTGTCCATCTCTCTCGCTCA-CCTCTAA-CAAACATGGGAG-CTTGTGC-GAG-CAGACCTAAGGATTTGGACAGGGA-CTTAGCCCCTGCCCCTGTTCCCGTCGAGGAATCTGTCAG-CCCTAAGGCTGA-CG-CTGTTCCTCAGGTATCTTTTTCGTATTAATTCTCTTGCATTTTGCTACTTGAGTATACATATATATATATATATGGACTTCATTGTTTTCTGCTCATAGGCGGATTCAGAATTTAAATATAATGAGTCATGAACGTATGCAATCTAATATGTTTGTCGTATTTCTTTTTTAATTTGTTTTTTTTTTAAAAAAAAGACCTCTTTCCTATTTTGAAAACTCTTTAATTTCAATTTTTCACCTGACATGCTTAAAAGTATTTTGGTACAGTCTCCATACCTTTAGTTTAAGAACACAAAATTCAGAATCAAACAAACAAATTGAAAAGGAGATAGTAAATAAATATACATGTTCTTTTTCATTTATTTTTTTTTAAAAAAATATATATATAGTAAGAATTATCACAGTAAGATAAGATTCAGGTCATGAAAATCGCACTCTACAGAAATACAATAGACTCAATGTAGTTATGTCATACGAGGAGCTAAGTGCACTGAGTTACCCTTATATACATCATTGAGGCAAAAGGGTTGATTTCTCGTTCAACTATATGTTTGACATTTTTTTTTTTTTGAAATGTACAATTTCTAAGTATGAGTTACTGCAACAAAAACAATCTTTAGCGACAATAAATATTAACATTAATGAAGAGTGTTTATCGGCATTAGTTAAGTGTCATTAGAATCAATGTCGCTAAAGGCTTTAGAGACATATACAAAAGTGCTTTAGCAGCAATTAACAATTAATTTTTCCGCTAATGATCATTTTTGATGTAGTGATTAAATCCTTTTTATCATGTTTCGAAATCACATATATGAAAATAATACTCTTGAAACATCAATATATATTTTTTTATGAAATTAGGAGAAAAATGGAGAGGAATCAAAGAAGGAAGAG-CCTTTGATTGATGTGTCAA-CAGAGGATA-CTAAAATTGAGGAAGCAAGCACAGAGACAAAGGCTGTTGTTGAAGCAGAAAAGGAAA-CAGCAGAGGAAGTCAAAGTTGAGGCTGTGAAAGAAGAGCCCAAAGAG-CAGCAGCCAGCTGAGTAAAAAAAAAGAGGCTGAAACTGTTG-CCCAGTAAATAATAA-CTCTCTACTTATCAAGTAAATAATGTATACATAAAATAATGGGCTTTGAGATTTAATTTTCAATCATATCTTTAGGCTTAATCAAGTTGATTCATTTGTTGAGGCTCCTTTACTTTCATCAAAACAACAACAATA</genome_strand>
        <mrna_strand>CTTTAATTCCTCAATATTAATATTACCTCTCTCAAGTTTGATTTCCTGTCCATCTCTGTCGCTCACCCTCTAACCAAACATGGGAGCCCTGTGCCGAGCCAGACCTAAGGATTTGGACAGGGACCTTAGCCCCTGCCCCTGTTCCCGTTGAGGAATCTGTCAGCCCCTAAGGCTGACCGCCTGTTCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAATGGAGAGGAATCAAAGAAGGAAGAGCCCTTTGATTGATGTGTCAACCAGAGGATACCTAAAATTGAGGAAGTAAGCACAGAGACCAAGGCTGTTGTTGAAGCAGAAAAGGAAACCAGCAGAGGAAGTCAAAGTTGAGGCTGTGAAAGAAGAGCCCAAAGAGCCAGCAGCCAGCTGAG-GAAAAAAAAGAGGCTGAAACTGTTGCCCCAGTAAATAATAACCTCTCCACTTATCAAGTAAATAATGTATACCATAAATAATGGGCTTTGAGATTTAATTTTCAATCATATCTTTAGGCTTAATCAAGTTGATTGATTTGTTGAGGCTCCTTTACTTTCATCAAAACAACCACCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363466" ref_strand="+" ref_description="SGN-E363466 [cLPP-4-B5]">
      <seq>tttaattcctcaatattaatattactctctcaagtttgatttcctgtccatctctgtcgctcacctctaacaaacatgggagcctgtgcgagcagacctaaggatttggacagggacttagcccctgcccctgttcccgttgaggaatctgtcagccctaaggctgacgctgttcctcaggagaaaaatggagaggaatcaaagaaggaagagcctttgattgatgtgtcaacagaggatactaaaattgaggaagtaagcacagagacaaaggctgttgttgaagcagaaaaggaaacagcagaggaagtcaaagttgaagctgtgaaagaagagcccaaagagcagcagccagctgaggaaaaaaaagaggctgaaactgttgcccagtaaataataactctccacttatcaagtaaataatgtatacataaataatgggctttgagatttaattttcaatcatatctttaggcttaatcaagttgattgatttgttgaggctcctttactttcatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79189" stop="77204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78889" g_stop="78710" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78709" i_stop="77860" i_length="850">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77859" g_stop="77504" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="534" r_length="354" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E363466" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78889" e_stop="78710"/>
          <exon e_start="77859" e_stop="77504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTCCTCAATATTAATATTACTCTCTCAAGTTTGATTTCCTGTCCATCTCTCTCGCTCACCTCTAACAAACATGGGAGCTTGTGCGAGCAGACCTAAGGATTTGGACAGGGACTTAGCCCCTGCCCCTGTTCCCGTCGAGGAATCTGTCAGCCCTAAGGCTGACGCTGTTCCTCAGGTATCTTTTTCGTATTAATTCTCTTGCATTTTGCTACTTGAGTATACATATATATATATATATGGACTTCATTGTTTTCTGCTCATAGGCGGATTCAGAATTTAAATATAATGAGTCATGAACGTATGCAATCTAATATGTTTGTCGTATTTCTTTTTTAATTTGTTTTTTTTTTAAAAAAAAGACCTCTTTCCTATTTTGAAAACTCTTTAATTTCAATTTTTCACCTGACATGCTTAAAAGTATTTTGGTACAGTCTCCATACCTTTAGTTTAAGAACACAAAATTCAGAATCAAACAAACAAATTGAAAAGGAGATAGTAAATAAATATACATGTTCTTTTTCATTTATTTTTTTTTAAAAAAATATATATATAGTAAGAATTATCACAGTAAGATAAGATTCAGGTCATGAAAATCGCACTCTACAGAAATACAATAGACTCAATGTAGTTATGTCATACGAGGAGCTAAGTGCACTGAGTTACCCTTATATACATCATTGAGGCAAAAGGGTTGATTTCTCGTTCAACTATATGTTTGACATTTTTTTTTTTTTGAAATGTACAATTTCTAAGTATGAGTTACTGCAACAAAAACAATCTTTAGCGACAATAAATATTAACATTAATGAAGAGTGTTTATCGGCATTAGTTAAGTGTCATTAGAATCAATGTCGCTAAAGGCTTTAGAGACATATACAAAAGTGCTTTAGCAGCAATTAACAATTAATTTTTCCGCTAATGATCATTTTTGATGTAGTGATTAAATCCTTTTTATCATGTTTCGAAATCACATATATGAAAATAATACTCTTGAAACATCAATATATATTTTTTTATGAAATTAGGAGAAAAATGGAGAGGAATCAAAGAAGGAAGAGCCTTTGATTGATGTGTCAACAGAGGATACTAAAATTGAGGAAGCAAGCACAGAGACAAAGGCTGTTGTTGAAGCAGAAAAGGAAACAGCAGAGGAAGTCAAAGTTGAGGCTGTGAAAGAAGAGCCCAAAGAGCAGCAGCCAGCTGAGTAAAAAAAAAGAGGCTGAAACTGTTGCCCAGTAAATAATAACTCTCTACTTATCAAGTAAATAATGTATACATAAAATAATGGGCTTTGAGATTTAATTTTCAATCATATCTTTAGGCTTAATCAAGTTGATTCATTTGTTGAGGCTCCTTTACTTTCATCAAAACAACAACAATA</genome_strand>
        <mrna_strand>TTTAATTCCTCAATATTAATATTACTCTCTCAAGTTTGATTTCCTGTCCATCTCTGTCGCTCACCTCTAACAAACATGGGAGCCTGTGCGAGCAGACCTAAGGATTTGGACAGGGACTTAGCCCCTGCCCCTGTTCCCGTTGAGGAATCTGTCAGCCCTAAGGCTGACGCTGTTCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAATGGAGAGGAATCAAAGAAGGAAGAGCCTTTGATTGATGTGTCAACAGAGGATACTAAAATTGAGGAAGTAAGCACAGAGACAAAGGCTGTTGTTGAAGCAGAAAAGGAAACAGCAGAGGAAGTCAAAGTTGAAGCTGTGAAAGAAGAGCCCAAAGAGCAGCAGCCAGCTGAG-GAAAAAAAAGAGGCTGAAACTGTTGCCCAGTAAATAATAACTCTCCACTTATCAAGTAAATAATGTATACAT-AAATAATGGGCTTTGAGATTTAATTTTCAATCATATCTTTAGGCTTAATCAAGTTGATTGATTTGTTGAGGCTCCTTTACTTTCATCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363351" ref_strand="+" ref_description="SGN-E363351 [cLPP-4-D20]">
      <seq>tttaattcctcaatattaatattactctctcaagtttgatttcctgtccatctctgtcgctcacctctaacaaacatgggagcctgtgcgagcagacctaaggatttggacagggacttagcccctgcccctgttcccgttgaggaatctgtcagccctaaggctgacgctgttcctcaggagaaaaatggagaggaatcaaagaaggaagagcctttgattgatgtgtcaacagaggatactaaaattgaggaagtaagcacagagacaaaggctgttgttgaagcagaaaaggaaacagcagaggaagtcaaagttgaggctgtgaaagaagagcccaaagagcagcagccagctgaggaaaaaaaagaggctgaaactgttgcccagtaaataataactctccacttatcaagtaaataatgtatacataaataatgggctttgagatttaattttcaatcatatctttaggcttaatcaagttgattgatttgttgaggctcctttactttcatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79189" stop="77204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78889" g_stop="78710" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78709" i_stop="77860" i_length="850">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77859" g_stop="77504" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="534" r_length="354" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E363351" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78889" e_stop="78710"/>
          <exon e_start="77859" e_stop="77504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTCCTCAATATTAATATTACTCTCTCAAGTTTGATTTCCTGTCCATCTCTCTCGCTCACCTCTAACAAACATGGGAGCTTGTGCGAGCAGACCTAAGGATTTGGACAGGGACTTAGCCCCTGCCCCTGTTCCCGTCGAGGAATCTGTCAGCCCTAAGGCTGACGCTGTTCCTCAGGTATCTTTTTCGTATTAATTCTCTTGCATTTTGCTACTTGAGTATACATATATATATATATATGGACTTCATTGTTTTCTGCTCATAGGCGGATTCAGAATTTAAATATAATGAGTCATGAACGTATGCAATCTAATATGTTTGTCGTATTTCTTTTTTAATTTGTTTTTTTTTTAAAAAAAAGACCTCTTTCCTATTTTGAAAACTCTTTAATTTCAATTTTTCACCTGACATGCTTAAAAGTATTTTGGTACAGTCTCCATACCTTTAGTTTAAGAACACAAAATTCAGAATCAAACAAACAAATTGAAAAGGAGATAGTAAATAAATATACATGTTCTTTTTCATTTATTTTTTTTTAAAAAAATATATATATAGTAAGAATTATCACAGTAAGATAAGATTCAGGTCATGAAAATCGCACTCTACAGAAATACAATAGACTCAATGTAGTTATGTCATACGAGGAGCTAAGTGCACTGAGTTACCCTTATATACATCATTGAGGCAAAAGGGTTGATTTCTCGTTCAACTATATGTTTGACATTTTTTTTTTTTTGAAATGTACAATTTCTAAGTATGAGTTACTGCAACAAAAACAATCTTTAGCGACAATAAATATTAACATTAATGAAGAGTGTTTATCGGCATTAGTTAAGTGTCATTAGAATCAATGTCGCTAAAGGCTTTAGAGACATATACAAAAGTGCTTTAGCAGCAATTAACAATTAATTTTTCCGCTAATGATCATTTTTGATGTAGTGATTAAATCCTTTTTATCATGTTTCGAAATCACATATATGAAAATAATACTCTTGAAACATCAATATATATTTTTTTATGAAATTAGGAGAAAAATGGAGAGGAATCAAAGAAGGAAGAGCCTTTGATTGATGTGTCAACAGAGGATACTAAAATTGAGGAAGCAAGCACAGAGACAAAGGCTGTTGTTGAAGCAGAAAAGGAAACAGCAGAGGAAGTCAAAGTTGAGGCTGTGAAAGAAGAGCCCAAAGAGCAGCAGCCAGCTGAGTAAAAAAAAAGAGGCTGAAACTGTTGCCCAGTAAATAATAACTCTCTACTTATCAAGTAAATAATGTATACATAAAATAATGGGCTTTGAGATTTAATTTTCAATCATATCTTTAGGCTTAATCAAGTTGATTCATTTGTTGAGGCTCCTTTACTTTCATCAAAACAACAACAATA</genome_strand>
        <mrna_strand>TTTAATTCCTCAATATTAATATTACTCTCTCAAGTTTGATTTCCTGTCCATCTCTGTCGCTCACCTCTAACAAACATGGGAGCCTGTGCGAGCAGACCTAAGGATTTGGACAGGGACTTAGCCCCTGCCCCTGTTCCCGTTGAGGAATCTGTCAGCCCTAAGGCTGACGCTGTTCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAATGGAGAGGAATCAAAGAAGGAAGAGCCTTTGATTGATGTGTCAACAGAGGATACTAAAATTGAGGAAGTAAGCACAGAGACAAAGGCTGTTGTTGAAGCAGAAAAGGAAACAGCAGAGGAAGTCAAAGTTGAGGCTGTGAAAGAAGAGCCCAAAGAGCAGCAGCCAGCTGAG-GAAAAAAAAGAGGCTGAAACTGTTGCCCAGTAAATAATAACTCTCCACTTATCAAGTAAATAATGTATACAT-AAATAATGGGCTTTGAGATTTAATTTTCAATCATATCTTTAGGCTTAATCAAGTTGATTGATTTGTTGAGGCTCCTTTACTTTCATCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362859" ref_strand="+" ref_description="SGN-E362859 [cLPP-2-P13]">
      <seq>agcctttgattgatgtgtcaacagaggatactaaaattgaggaagtaagcacagagacaaaggctgttgttgaagcagaaaaggaaacagcagaggaagtcaaagttgaggctgtgaaagaagagcccaaagagcagcagccagctgaggaaaaaaaagaggctgaaactgttgcccagtaaataataactctccacttatcaagtaaataatgtatacataaataatgggctttgagatttaattttcaatcatatctttaggcttaatcaagttgattgatttgttgaggctcctttactttcatcaaaacaacaacaatagtaacagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78128" stop="77192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77828" g_stop="77504" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="331" polyA_stop="340"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E362859" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77828" e_stop="77504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTTGATTGATGTGTCAACAGAGGATACTAAAATTGAGGAAGCAAGCACAGAGACAAAGGCTGTTGTTGAAGCAGAAAAGGAAACAGCAGAGGAAGTCAAAGTTGAGGCTGTGAAAGAAGAGCCCAAAGAGCAGCAGCCAGCTGAGTAAAAAAAAAGAGGCTGAAACTGTTGCCCAGTAAATAATAACTCTCTACTTATCAAGTAAATAATGTATACATAAAATAATGGGCTTTGAGATTTAATTTTCAATCATATCTTTAGGCTTAATCAAGTTGATTCATTTGTTGAGGCTCCTTTACTTTCATCAAAACAACAACAATA</genome_strand>
        <mrna_strand>AGCCTTTGATTGATGTGTCAACAGAGGATACTAAAATTGAGGAAGTAAGCACAGAGACAAAGGCTGTTGTTGAAGCAGAAAAGGAAACAGCAGAGGAAGTCAAAGTTGAGGCTGTGAAAGAAGAGCCCAAAGAGCAGCAGCCAGCTGAG-GAAAAAAAAGAGGCTGAAACTGTTGCCCAGTAAATAATAACTCTCCACTTATCAAGTAAATAATGTATACAT-AAATAATGGGCTTTGAGATTTAATTTTCAATCATATCTTTAGGCTTAATCAAGTTGATTGATTTGTTGAGGCTCCTTTACTTTCATCAAAACAACAACAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374072" ref_strand="+" ref_description="SGN-E374072 [TUS-33-O7]">
      <seq>agcctttgattgatgtgtcaacagaggatactaaaattgaggaagtaagcacagagacaaaggctgttgttgaagcagaaaaggaaacagcagaggaagtcaaagttgaggctgtgaaagaagagcccaaagagcagcagccagctgaggaaaaaaaagaggctgaaactgttgcccagtaaataataactctccacttatcaagtaaataatgtatacataaataatgggctttgagatttaattttcaatcatatctttaggcttaatcaagttgattgatttgttgaggctcctttactttcatcaaaacaacaacaatagtaacagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78128" stop="77192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77828" g_stop="77504" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="331" polyA_stop="340"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E374072" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77828" e_stop="77504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTTGATTGATGTGTCAACAGAGGATACTAAAATTGAGGAAGCAAGCACAGAGACAAAGGCTGTTGTTGAAGCAGAAAAGGAAACAGCAGAGGAAGTCAAAGTTGAGGCTGTGAAAGAAGAGCCCAAAGAGCAGCAGCCAGCTGAGTAAAAAAAAAGAGGCTGAAACTGTTGCCCAGTAAATAATAACTCTCTACTTATCAAGTAAATAATGTATACATAAAATAATGGGCTTTGAGATTTAATTTTCAATCATATCTTTAGGCTTAATCAAGTTGATTCATTTGTTGAGGCTCCTTTACTTTCATCAAAACAACAACAATA</genome_strand>
        <mrna_strand>AGCCTTTGATTGATGTGTCAACAGAGGATACTAAAATTGAGGAAGTAAGCACAGAGACAAAGGCTGTTGTTGAAGCAGAAAAGGAAACAGCAGAGGAAGTCAAAGTTGAGGCTGTGAAAGAAGAGCCCAAAGAGCAGCAGCCAGCTGAG-GAAAAAAAAGAGGCTGAAACTGTTGCCCAGTAAATAATAACTCTCCACTTATCAAGTAAATAATGTATACAT-AAATAATGGGCTTTGAGATTTAATTTTCAATCATATCTTTAGGCTTAATCAAGTTGATTGATTTGTTGAGGCTCCTTTACTTTCATCAAAACAACAACAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360314" ref_strand="+" ref_description="SGN-E360314 [cLPP-8-K23]">
      <seq>ttaattcctcaatattaatattactctctcaagtttgatttcctgtccatctctgtcgctcacctctaacaaacatgggagcctgtgcgagcagacctaaggatttggacagggacttagcccctgcccctgttcccgttgaggaatctgtcagccctaaggctgacgctgttcctcaggagaaaaatggagaggaatcaaagaaggaagagcctttgattgatgtgtcaacagaggatactaaaattgaggaagtaagcacagagacaaaggctgttgttgaagcagaaaaggaaacagcagaggaagtcaaagttgaggctgtgaaagaagagcccaaagagcagcagccagctgaggaaaaaaaagaggctgaaactgttgcccagtaaataataactctccacttatcaagtaaataatgtatacataaataatgggctttgagatttaattttcaatcatatctttaggcttaatcaagttgattgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79188" stop="77245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78888" g_stop="78710" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78709" i_stop="77860" i_length="850">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77859" g_stop="77546" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="491" r_length="312" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="508"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E360314" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78888" e_stop="78710"/>
          <exon e_start="77859" e_stop="77546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTCCTCAATATTAATATTACTCTCTCAAGTTTGATTTCCTGTCCATCTCTCTCGCTCACCTCTAACAAACATGGGAGCTTGTGCGAGCAGACCTAAGGATTTGGACAGGGACTTAGCCCCTGCCCCTGTTCCCGTCGAGGAATCTGTCAGCCCTAAGGCTGACGCTGTTCCTCAGGTATCTTTTTCGTATTAATTCTCTTGCATTTTGCTACTTGAGTATACATATATATATATATATGGACTTCATTGTTTTCTGCTCATAGGCGGATTCAGAATTTAAATATAATGAGTCATGAACGTATGCAATCTAATATGTTTGTCGTATTTCTTTTTTAATTTGTTTTTTTTTTAAAAAAAAGACCTCTTTCCTATTTTGAAAACTCTTTAATTTCAATTTTTCACCTGACATGCTTAAAAGTATTTTGGTACAGTCTCCATACCTTTAGTTTAAGAACACAAAATTCAGAATCAAACAAACAAATTGAAAAGGAGATAGTAAATAAATATACATGTTCTTTTTCATTTATTTTTTTTTAAAAAAATATATATATAGTAAGAATTATCACAGTAAGATAAGATTCAGGTCATGAAAATCGCACTCTACAGAAATACAATAGACTCAATGTAGTTATGTCATACGAGGAGCTAAGTGCACTGAGTTACCCTTATATACATCATTGAGGCAAAAGGGTTGATTTCTCGTTCAACTATATGTTTGACATTTTTTTTTTTTTGAAATGTACAATTTCTAAGTATGAGTTACTGCAACAAAAACAATCTTTAGCGACAATAAATATTAACATTAATGAAGAGTGTTTATCGGCATTAGTTAAGTGTCATTAGAATCAATGTCGCTAAAGGCTTTAGAGACATATACAAAAGTGCTTTAGCAGCAATTAACAATTAATTTTTCCGCTAATGATCATTTTTGATGTAGTGATTAAATCCTTTTTATCATGTTTCGAAATCACATATATGAAAATAATACTCTTGAAACATCAATATATATTTTTTTATGAAATTAGGAGAAAAATGGAGAGGAATCAAAGAAGGAAGAGCCTTTGATTGATGTGTCAACAGAGGATACTAAAATTGAGGAAGCAAGCACAGAGACAAAGGCTGTTGTTGAAGCAGAAAAGGAAACAGCAGAGGAAGTCAAAGTTGAGGCTGTGAAAGAAGAGCCCAAAGAGCAGCAGCCAGCTGAGTAAAAAAAAAGAGGCTGAAACTGTTGCCCAGTAAATAATAACTCTCTACTTATCAAGTAAATAATGTATACATAAAATAATGGGCTTTGAGATTTAATTTTCAATCATATCTTTAGGCTTAATCAAGTTGATTC</genome_strand>
        <mrna_strand>TTAATTCCTCAATATTAATATTACTCTCTCAAGTTTGATTTCCTGTCCATCTCTGTCGCTCACCTCTAACAAACATGGGAGCCTGTGCGAGCAGACCTAAGGATTTGGACAGGGACTTAGCCCCTGCCCCTGTTCCCGTTGAGGAATCTGTCAGCCCTAAGGCTGACGCTGTTCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAATGGAGAGGAATCAAAGAAGGAAGAGCCTTTGATTGATGTGTCAACAGAGGATACTAAAATTGAGGAAGTAAGCACAGAGACAAAGGCTGTTGTTGAAGCAGAAAAGGAAACAGCAGAGGAAGTCAAAGTTGAGGCTGTGAAAGAAGAGCCCAAAGAGCAGCAGCCAGCTGAG-GAAAAAAAAGAGGCTGAAACTGTTGCCCAGTAAATAATAACTCTCCACTTATCAAGTAAATAATGTATACAT-AAATAATGGGCTTTGAGATTTAATTTTCAATCATATCTTTAGGCTTAATCAAGTTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360876" ref_strand="+" ref_description="SGN-E360876 [cLPP-7-P24]">
      <seq>ttacaactttaattcctcaatattaatattactctctcaagtttgatttcctgtccatctctgtcgctcacctctaacaaacatgggagcctgtgcgagcagacctaaggatttggacagggacttagcccctgcccctgttcccgttgaggaatctgtcagccctaaggctgacgctgttcctcaggagaaaaatggagaggaatcaaagaaggaagagcctttgattgatgtgtcaacagaggatactaaaattgaggaagtaagcacagagacaaaggctgttgttgaagcagaaaaggaaacagcagaggaagtcaaagttgaggctgtgaaagaagagcccaaagagcagcagccagctgaggaaaaaaaagaggctgaaactgttgcccagtaaataataactctccacttatcaagtaaataatgtatacataaataatgggctttgagatttaattttcaatcatatctttaggcttaatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79196" stop="77254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78896" g_stop="78710" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78709" i_stop="77860" i_length="850">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77859" g_stop="77554" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="491" r_length="304" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E360876" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78896" e_stop="78710"/>
          <exon e_start="77859" e_stop="77554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAACTTTAATTCCTCAATATTAATATTACTCTCTCAAGTTTGATTTCCTGTCCATCTCTCTCGCTCACCTCTAACAAACATGGGAGCTTGTGCGAGCAGACCTAAGGATTTGGACAGGGACTTAGCCCCTGCCCCTGTTCCCGTCGAGGAATCTGTCAGCCCTAAGGCTGACGCTGTTCCTCAGGTATCTTTTTCGTATTAATTCTCTTGCATTTTGCTACTTGAGTATACATATATATATATATATGGACTTCATTGTTTTCTGCTCATAGGCGGATTCAGAATTTAAATATAATGAGTCATGAACGTATGCAATCTAATATGTTTGTCGTATTTCTTTTTTAATTTGTTTTTTTTTTAAAAAAAAGACCTCTTTCCTATTTTGAAAACTCTTTAATTTCAATTTTTCACCTGACATGCTTAAAAGTATTTTGGTACAGTCTCCATACCTTTAGTTTAAGAACACAAAATTCAGAATCAAACAAACAAATTGAAAAGGAGATAGTAAATAAATATACATGTTCTTTTTCATTTATTTTTTTTTAAAAAAATATATATATAGTAAGAATTATCACAGTAAGATAAGATTCAGGTCATGAAAATCGCACTCTACAGAAATACAATAGACTCAATGTAGTTATGTCATACGAGGAGCTAAGTGCACTGAGTTACCCTTATATACATCATTGAGGCAAAAGGGTTGATTTCTCGTTCAACTATATGTTTGACATTTTTTTTTTTTTGAAATGTACAATTTCTAAGTATGAGTTACTGCAACAAAAACAATCTTTAGCGACAATAAATATTAACATTAATGAAGAGTGTTTATCGGCATTAGTTAAGTGTCATTAGAATCAATGTCGCTAAAGGCTTTAGAGACATATACAAAAGTGCTTTAGCAGCAATTAACAATTAATTTTTCCGCTAATGATCATTTTTGATGTAGTGATTAAATCCTTTTTATCATGTTTCGAAATCACATATATGAAAATAATACTCTTGAAACATCAATATATATTTTTTTATGAAATTAGGAGAAAAATGGAGAGGAATCAAAGAAGGAAGAGCCTTTGATTGATGTGTCAACAGAGGATACTAAAATTGAGGAAGCAAGCACAGAGACAAAGGCTGTTGTTGAAGCAGAAAAGGAAACAGCAGAGGAAGTCAAAGTTGAGGCTGTGAAAGAAGAGCCCAAAGAGCAGCAGCCAGCTGAGTAAAAAAAAAGAGGCTGAAACTGTTGCCCAGTAAATAATAACTCTCTACTTATCAAGTAAATAATGTATACATAAAATAATGGGCTTTGAGATTTAATTTTCAATCATATCTTTAGGCTTAATCAA</genome_strand>
        <mrna_strand>TTACAACTTTAATTCCTCAATATTAATATTACTCTCTCAAGTTTGATTTCCTGTCCATCTCTGTCGCTCACCTCTAACAAACATGGGAGCCTGTGCGAGCAGACCTAAGGATTTGGACAGGGACTTAGCCCCTGCCCCTGTTCCCGTTGAGGAATCTGTCAGCCCTAAGGCTGACGCTGTTCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAATGGAGAGGAATCAAAGAAGGAAGAGCCTTTGATTGATGTGTCAACAGAGGATACTAAAATTGAGGAAGTAAGCACAGAGACAAAGGCTGTTGTTGAAGCAGAAAAGGAAACAGCAGAGGAAGTCAAAGTTGAGGCTGTGAAAGAAGAGCCCAAAGAGCAGCAGCCAGCTGAG-GAAAAAAAAGAGGCTGAAACTGTTGCCCAGTAAATAATAACTCTCCACTTATCAAGTAAATAATGTATACAT-AAATAATGGGCTTTGAGATTTAATTTTCAATCATATCTTTAGGCTTAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364652" ref_strand="+" ref_description="SGN-E364652 [cLPP-18-B11]">
      <seq>aagtttacaagccttacaactttaattcctcaatattaatattactctctcaagtttgatttcctgtccatctctgtcgctcacctctaacaaacatgggagcctgtgcgagcagacctaaggatttggacagggacttagcccctgcccctgttcccgttgaggaatctgtcagccctaaggctgacgctgttcctcaggagaaaaatggagaggaatcaaagaaggaagagcctttgattgatgtgtcaacagaggatactaaaattgaggaagtaagcacagagacaaaggctgttgttgaagcagaaaaggaaacagcagaggaagtcaaagttgaggctgtgaaagaagagcccaaagagcagcagccagctgaggaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79209" stop="77370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78909" g_stop="78710" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78709" i_stop="77860" i_length="850">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77859" g_stop="77671" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="389" r_length="189" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E364652" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78909" e_stop="78710"/>
          <exon e_start="77859" e_stop="77671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTACAAGCCTTACAACTTTAATTCCTCAATATTAATATTACTCTCTCAAGTTTGATTTCCTGTCCATCTCTCTCGCTCACCTCTAACAAACATGGGAGCTTGTGCGAGCAGACCTAAGGATTTGGACAGGGACTTAGCCCCTGCCCCTGTTCCCGTCGAGGAATCTGTCAGCCCTAAGGCTGACGCTGTTCCTCAGGTATCTTTTTCGTATTAATTCTCTTGCATTTTGCTACTTGAGTATACATATATATATATATATGGACTTCATTGTTTTCTGCTCATAGGCGGATTCAGAATTTAAATATAATGAGTCATGAACGTATGCAATCTAATATGTTTGTCGTATTTCTTTTTTAATTTGTTTTTTTTTTAAAAAAAAGACCTCTTTCCTATTTTGAAAACTCTTTAATTTCAATTTTTCACCTGACATGCTTAAAAGTATTTTGGTACAGTCTCCATACCTTTAGTTTAAGAACACAAAATTCAGAATCAAACAAACAAATTGAAAAGGAGATAGTAAATAAATATACATGTTCTTTTTCATTTATTTTTTTTTAAAAAAATATATATATAGTAAGAATTATCACAGTAAGATAAGATTCAGGTCATGAAAATCGCACTCTACAGAAATACAATAGACTCAATGTAGTTATGTCATACGAGGAGCTAAGTGCACTGAGTTACCCTTATATACATCATTGAGGCAAAAGGGTTGATTTCTCGTTCAACTATATGTTTGACATTTTTTTTTTTTTGAAATGTACAATTTCTAAGTATGAGTTACTGCAACAAAAACAATCTTTAGCGACAATAAATATTAACATTAATGAAGAGTGTTTATCGGCATTAGTTAAGTGTCATTAGAATCAATGTCGCTAAAGGCTTTAGAGACATATACAAAAGTGCTTTAGCAGCAATTAACAATTAATTTTTCCGCTAATGATCATTTTTGATGTAGTGATTAAATCCTTTTTATCATGTTTCGAAATCACATATATGAAAATAATACTCTTGAAACATCAATATATATTTTTTTATGAAATTAGGAGAAAAATGGAGAGGAATCAAAGAAGGAAGAGCCTTTGATTGATGTGTCAACAGAGGATACTAAAATTGAGGAAGCAAGCACAGAGACAAAGGCTGTTGTTGAAGCAGAAAAGGAAACAGCAGAGGAAGTCAAAGTTGAGGCTGTGAAAGAAGAGCCCAAAGAGCAGCAGCCAGCTGAGTAAAAAAAA</genome_strand>
        <mrna_strand>AAGTTTACAAGCCTTACAACTTTAATTCCTCAATATTAATATTACTCTCTCAAGTTTGATTTCCTGTCCATCTCTGTCGCTCACCTCTAACAAACATGGGAGCCTGTGCGAGCAGACCTAAGGATTTGGACAGGGACTTAGCCCCTGCCCCTGTTCCCGTTGAGGAATCTGTCAGCCCTAAGGCTGACGCTGTTCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAATGGAGAGGAATCAAAGAAGGAAGAGCCTTTGATTGATGTGTCAACAGAGGATACTAAAATTGAGGAAGTAAGCACAGAGACAAAGGCTGTTGTTGAAGCAGAAAAGGAAACAGCAGAGGAAGTCAAAGTTGAGGCTGTGAAAGAAGAGCCCAAAGAGCAGCAGCCAGCTGAGGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714282" ref_strand="+" ref_description="SGN-E714282 [FB11AA09]">
      <seq>cttttcaggatgacttggatgactttgatttttcctgtccttttatagttgatgatgttgatacttctgtttcccgagccagagagaaccttgaatccagaaagcgcccagaagcctcgtctagagtatctgcaacaaccagaaaatctcaagatgctgctgtaggtgcccttgttcacatgttgagaactgctcctccgctgcgtcaagattctacttgctatactacagattctatagagggagaggtagagggggaaactggcactgcatctcagttctatgttcctaggaaggcatcagatgcattggaggagctcaaagcttatactgagttgaaagatatgttacttcccaagagcacgacccgctcagacagtgaggatgggagctatgcgtgatgtacatatatacttgtttgctaagtaacgttaaggagtgtttactgtgtgagagaagtgaggactaacagattctgtacataaatgatgagaaatggcaagtatgatagttaatatgctgccttattttgacactacttgaaaacatttgtgtttcgaagaaacaagtagtaggtatcttaaaagaatatgctctattgagttcctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52985" stop="81368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79718" g_stop="79799" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79800" i_stop="80537" i_length="738">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80538" g_stop="81064" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="609" r_length="527" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="610" polyA_stop="622"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E714282" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79718" e_stop="79799"/>
          <exon e_start="80538" e_stop="81064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATGAAACAGTAAATTCTACTGAAAGAGTGTAAGAATGCTTGTTATTTGCCTGTTGTGCTATATATGAGTTGGTGTTGTCAATATACATAGCGTTTGATGTAATATGCATTTAGTGCTTGATGTATCTTAGGCATATCTGATATTTTAAAGTCTAAAATTCGCTTGAGTGAAAACTTTGTTTAGCTAACTGTATTGGGAATCACACTCACTTTTGTTTCCTTTTTTTAGCTAGTGTGCTCAAAGGAAAATTCGACTTCTAGGAAAGCTGCTTCCTTTTCTTAGCAAGTGTCCTCGAGGGAAAATTCGACTTTAGGAAAGCTGCCATCTGCATAAATTTTCCTTAATCATTTGATAAAAACTCACTCTGTTTCTCTCGGAAAAAGAAACCACTTTGTTTTTTGTTGTCGGGTTTGTTATTGATATACCTCTTGGTGTAAAGAGGAGTAAATTGATATACCTCTTGGTGTAAAGAGGAGTAATGGTGAGCTAAAAATTATGCATGCAAGATTTGACTCGCGGTAAGTGATGGTAGAGTACTTTAAATCAGGACAAGTTCGGGGTTTCAAATTCCCTTTAAGTAGTTTGATATGGACCTGTATTAATTTTATCACGCCTTAGATACATTATGTTAGGGCTGAGATGTTTATACCACCAAATTGTTGTGGACATCTATCTTCATTTCTTTCTTTCTTTCTTAGATTTTCAACTCAACAAGTATTTACTGTTCTGGTTATGCAGAGAGAACCTTGAATCCAGAAAGCGCCCAGAAGCCTCGTCTAGAGTATCTGCAACAACCAGAAAATCTCAAGATGCTGCTGTAGGTGCCCTTGTTCACATGTTGAGAACTGCTCCTCCGCTGCGTCAAGATTCTACTTGCTATACTACAGATTCTATAGAGGGAGAGGTAGAGGGGGAAACTGGCACTGCATCTCAGTTCTATGTTCCTAGGAAGGCATCAGATGCATTGGAGGAGCTCAAAGCTTATACTGAGTTGAAAGATATGTTACTTCCCAAGAGCACGACCCGCTCAGACAGTGAGGATGGGAGCTATGCGTGATGTACATATATACTTGTTTGCTAAGTAACGTTAAGGAGTGTTTACTGTGTGAGAGAAGTGAGGACTAACAGATTCTGTACATAAATGATGAGAAATGGCAAGTATGATAGTTAATATGCTGCCTTATTTTGACACTACTTGAAAACATTTGTGTTTCGAAGAAACAAGTAGTAGGTATCTTAAAAGAATATGCTCTATTGAGTTCCTA</genome_strand>
        <mrna_strand>CTTTTCAGGATGACTTGGATGACTTTGATTTTTCCTGTCCTTTTATAGTTGATGATGTTGATACTTCTGTTTCCCGAGCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAACCTTGAATCCAGAAAGCGCCCAGAAGCCTCGTCTAGAGTATCTGCAACAACCAGAAAATCTCAAGATGCTGCTGTAGGTGCCCTTGTTCACATGTTGAGAACTGCTCCTCCGCTGCGTCAAGATTCTACTTGCTATACTACAGATTCTATAGAGGGAGAGGTAGAGGGGGAAACTGGCACTGCATCTCAGTTCTATGTTCCTAGGAAGGCATCAGATGCATTGGAGGAGCTCAAAGCTTATACTGAGTTGAAAGATATGTTACTTCCCAAGAGCACGACCCGCTCAGACAGTGAGGATGGGAGCTATGCGTGATGTACATATATACTTGTTTGCTAAGTAACGTTAAGGAGTGTTTACTGTGTGAGAGAAGTGAGGACTAACAGATTCTGTACATAAATGATGAGAAATGGCAAGTATGATAGTTAATATGCTGCCTTATTTTGACACTACTTGAAAACATTTGTGTTTCGAAGAAACAAGTAGTAGGTATCTTAAAAGAATATGCTCTATTGAGTTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714750" ref_strand="+" ref_description="SGN-E714750 [FB12BD02]">
      <seq>cttttcaggatgacttggatgactttgatttttcctgtccttttatagttgatgatgttgatacttctgtttcccgagccagagagaaccttgaatccagaaagcgcccagaagcctcgtctagagtatctgcaacaaccagaaaatctcaagatgctgctgtaggtgcccttgttcacatgttgagaactgctcctccgctgcgtcaagattctacttgctatactacagattctatagagggagaggtagagggggaaactggcactgcatctcagttctatgttcctaggaaggcatcagatgcattggaggagctcaaagcttatactgagttgaaagatatgttacttcccaagagcacgacccgctcagacagtgaggatgggagctatgcgtgatgtacatatatacttgtttgctaagtaacgttaaggagtgtttactgtgtgagagaagtgaggactaacagattctgtacataaatgatgagaaatggcaagtatgatagttaatatgctgccttattttgacactacttgaaaacatttgtgtttcgaagaaacaagtagtaggtatcttaaaagaatatgctctattgagttcctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52985" stop="81368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79718" g_stop="79799" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79800" i_stop="80537" i_length="738">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80538" g_stop="81064" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="609" r_length="527" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="610" polyA_stop="622"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E714750" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79718" e_stop="79799"/>
          <exon e_start="80538" e_stop="81064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATGAAACAGTAAATTCTACTGAAAGAGTGTAAGAATGCTTGTTATTTGCCTGTTGTGCTATATATGAGTTGGTGTTGTCAATATACATAGCGTTTGATGTAATATGCATTTAGTGCTTGATGTATCTTAGGCATATCTGATATTTTAAAGTCTAAAATTCGCTTGAGTGAAAACTTTGTTTAGCTAACTGTATTGGGAATCACACTCACTTTTGTTTCCTTTTTTTAGCTAGTGTGCTCAAAGGAAAATTCGACTTCTAGGAAAGCTGCTTCCTTTTCTTAGCAAGTGTCCTCGAGGGAAAATTCGACTTTAGGAAAGCTGCCATCTGCATAAATTTTCCTTAATCATTTGATAAAAACTCACTCTGTTTCTCTCGGAAAAAGAAACCACTTTGTTTTTTGTTGTCGGGTTTGTTATTGATATACCTCTTGGTGTAAAGAGGAGTAAATTGATATACCTCTTGGTGTAAAGAGGAGTAATGGTGAGCTAAAAATTATGCATGCAAGATTTGACTCGCGGTAAGTGATGGTAGAGTACTTTAAATCAGGACAAGTTCGGGGTTTCAAATTCCCTTTAAGTAGTTTGATATGGACCTGTATTAATTTTATCACGCCTTAGATACATTATGTTAGGGCTGAGATGTTTATACCACCAAATTGTTGTGGACATCTATCTTCATTTCTTTCTTTCTTTCTTAGATTTTCAACTCAACAAGTATTTACTGTTCTGGTTATGCAGAGAGAACCTTGAATCCAGAAAGCGCCCAGAAGCCTCGTCTAGAGTATCTGCAACAACCAGAAAATCTCAAGATGCTGCTGTAGGTGCCCTTGTTCACATGTTGAGAACTGCTCCTCCGCTGCGTCAAGATTCTACTTGCTATACTACAGATTCTATAGAGGGAGAGGTAGAGGGGGAAACTGGCACTGCATCTCAGTTCTATGTTCCTAGGAAGGCATCAGATGCATTGGAGGAGCTCAAAGCTTATACTGAGTTGAAAGATATGTTACTTCCCAAGAGCACGACCCGCTCAGACAGTGAGGATGGGAGCTATGCGTGATGTACATATATACTTGTTTGCTAAGTAACGTTAAGGAGTGTTTACTGTGTGAGAGAAGTGAGGACTAACAGATTCTGTACATAAATGATGAGAAATGGCAAGTATGATAGTTAATATGCTGCCTTATTTTGACACTACTTGAAAACATTTGTGTTTCGAAGAAACAAGTAGTAGGTATCTTAAAAGAATATGCTCTATTGAGTTCCTA</genome_strand>
        <mrna_strand>CTTTTCAGGATGACTTGGATGACTTTGATTTTTCCTGTCCTTTTATAGTTGATGATGTTGATACTTCTGTTTCCCGAGCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAACCTTGAATCCAGAAAGCGCCCAGAAGCCTCGTCTAGAGTATCTGCAACAACCAGAAAATCTCAAGATGCTGCTGTAGGTGCCCTTGTTCACATGTTGAGAACTGCTCCTCCGCTGCGTCAAGATTCTACTTGCTATACTACAGATTCTATAGAGGGAGAGGTAGAGGGGGAAACTGGCACTGCATCTCAGTTCTATGTTCCTAGGAAGGCATCAGATGCATTGGAGGAGCTCAAAGCTTATACTGAGTTGAAAGATATGTTACTTCCCAAGAGCACGACCCGCTCAGACAGTGAGGATGGGAGCTATGCGTGATGTACATATATACTTGTTTGCTAAGTAACGTTAAGGAGTGTTTACTGTGTGAGAGAAGTGAGGACTAACAGATTCTGTACATAAATGATGAGAAATGGCAAGTATGATAGTTAATATGCTGCCTTATTTTGACACTACTTGAAAACATTTGTGTTTCGAAGAAACAAGTAGTAGGTATCTTAAAAGAATATGCTCTATTGAGTTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221089" ref_strand="+" ref_description="SGN-E221089 [cLEL-22-A6](-)">
      <seq>tgttcctaggaaggcatcagatgcattggaggagctcaaagcttatactaagttgaaagatatgttacttcccaaaagcacgacccgctcagtcagtgaggatgggagctatgcgtgatgtacatataaacttgtttgctaagtaacgttaaggagtgtttactgtgtaagaaaagtgaggactaacagattctgtacataaatgatgagaaatggcaagtatgatagttaaaacacccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80439" stop="81272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80739" g_stop="80969" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="240" polyA_stop="256"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E221089" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>231</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80739" e_stop="80969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCCTAGGAAGGCATCAGATGCATTGGAGGAGCTCAAAGCTTATACTGAGTTGAAAGATATGTTACTTCCCAAGAGCACGACCCGCTCAGACAGTGAGGATGGGAGCTATGCGTGATGTACATATATACTTGTTTGCTAAGTAACGTTAAGGAGTGTTTACTGTGTGAGAGAAGTGAGGACTAACAGATTCTGTACATAAATGATGAGAAATGGCAAGTATGATAGTTA</genome_strand>
        <mrna_strand>TGTTCCTAGGAAGGCATCAGATGCATTGGAGGAGCTCAAAGCTTATACTAAGTTGAAAGATATGTTACTTCCCAAAAGCACGACCCGCTCAGTCAGTGAGGATGGGAGCTATGCGTGATGTACATATAAACTTGTTTGCTAAGTAACGTTAAGGAGTGTTTACTGTGTAAGAAAAGTGAGGACTAACAGATTCTGTACATAAATGATGAGAAATGGCAAGTATGATAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248336" ref_strand="+" ref_description="SGN-E248336 [cLEG-1-P5]">
      <seq>aaaaatgtcattttcaatcttttttccttctaagctaattaacaattggtatgtgggaagaaagtataaacagacaaaaagtaccttgtttaattagactccaaattttagtgtattgttttgttgtattttaatatcatgaaaaggattggaagaaccttacgccttaagctatgcaaaggtcttggtcaaggcccaagggaaattgcacgttgttaaaatgaattttgagttcgatgataaattcagaatatttaaattttgattttagtatgttttattataatttaaaagtaagaccattgaactttttattctcaatatttttttatttttacgagtgtagttaatcttttgaaaagtaacaattgattgattatccacacaaagttgaatagagagctccaatgtattatatatcaaaagacgtgacgtaatctaacagttcgttttgactaccgctttaaaagattctctgtcaagtgcttttatatatttttactacaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="-" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87399" stop="86291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87099" g_stop="86591" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="-" ref_id="SGN-E248336" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87099" e_stop="86591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGTCATTTTCAATCTTTTTTCCTTCTAAGCTAATTAACAATTGGTATGTGGGAAGAAAGTATAAACAGACAAAAAGTACCTTGTTTAATTAGACTCCAAATTTTAGTGTATTGTTTTGTTGTATTTTAATATCATGAAAAGGATTGGAAGAACCTTACGCCTTAAGCTATGCAAAGGTCTTGGTCAAGGCCCAAGGGAAATTGCACGTTGTTAAAATGAATTTTGAGTTCGATGATAAATTCAGAATATTTAAATTTTGATTTTAGTATGTTTTATTATAATTTAAAAGTAAGACCATTGAACTTTTTATTCTCAATATTTTTTTATTTTTACGAGTGTAGTTAATCTTTTGAAAAGTAACAATTGATTGATTATCCACACAAAGTTGAATAGAGAGCTCCAATGTATTATATATCAAAAGACGTGACGTAATCTAACAGTTCGTTTTGACTACCGCTTTAAAAGATTCTCTGTCAAGTGCTTTTATATATTTTTACTACAATA</genome_strand>
        <mrna_strand>AAAAATGTCATTTTCAATCTTTTTTCCTTCTAAGCTAATTAACAATTGGTATGTGGGAAGAAAGTATAAACAGACAAAAAGTACCTTGTTTAATTAGACTCCAAATTTTAGTGTATTGTTTTGTTGTATTTTAATATCATGAAAAGGATTGGAAGAACCTTACGCCTTAAGCTATGCAAAGGTCTTGGTCAAGGCCCAAGGGAAATTGCACGTTGTTAAAATGAATTTTGAGTTCGATGATAAATTCAGAATATTTAAATTTTGATTTTAGTATGTTTTATTATAATTTAAAAGTAAGACCATTGAACTTTTTATTCTCAATATTTTTTTATTTTTACGAGTGTAGTTAATCTTTTGAAAAGTAACAATTGATTGATTATCCACACAAAGTTGAATAGAGAGCTCCAATGTATTATATATCAAAAGACGTGACGTAATCTAACAGTTCGTTTTGACTACCGCTTTAAAAGATTCTCTGTCAAGTGCTTTTATATATTTTTACTACAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747276" ref_strand="+" ref_description="SGN-E747276 [GI|47104686]">
      <seq>tgaacccattaattaacattatcgtcatttggttcacgtgaaaaaaaccaagcccacaatatctaaaatatgtatatatattagctactttaagcttcaatgacattttagttcttgtatcacatctctatttttgtgttctaaaacataatgacaacaacaagtgttctttctagtggattcaaccactcaaccctccctcagtcttacgttcgacctgaatctcaaagaccttgcatgtctgaagttgttgatagcgacgatcttgtcccagtcattgatatgtcttgtactaataggaacgttatcgttcatcaaatcggtgaagcttgtcgtctttatgggtttttccaggtgataaatcacggtgtgtcgaagaaggtgatagatgaaatgttaggggtaagtcatgaattttttaagctaccagttgaagaaaagatgaaattgtattctgatgatccatcaaaaactatgagattatcaactagttttaatgttaagaaggaagctgttcataattggagagattatcttaggctacattgttatcctttggacaaatatgcccctgaatggccttctaatcctccttctttcagggaaatagtaagcaaatattgcatggaagttagagagcttggatatagattggaagaagcaatatcagagagcttagggcttgagaaggattgtataaaaaatgtgttaggtgaacaaggacaacatatggctatcaatttttatcctcagtgtccacaacctgaattaacttatgggttaccagcccatacagatccaaatgcaattacaattcttcttcaagatttgcaagtggctggccttcaagttcttaaggatggaaaatggctatctattaaacctcagcctaatgcctttgtcatcaatcttggtgatcaattggaggcgttgagtaatgggaagtataaaagtatatggcatagagctatagtgaattcagacaaagcaaggatgtctgtggcttctttcctctgtcccaatgattgttccattatcagtgctccaaaaaccttaactgaagatggatcttctgcaatttatcgacatttcacttatgctgaatattatgaaaaattctggagcaggaatttagatcaggaatattgtttagaacttttcaagaacgatggaacctagtacttgtatgagtttattacttttgtatcgacctaagtgtggttgtcacacaattatgttaggaaacaatcacttgatatagttcagatatgaaactcgcaaaaaaaatgatacttcaagtatgtaaaactttttttgttctttttctctggcattatcatctgttgcacccctgttttatatgtggaatcaaattgggaaagatgaaattgcattggctgataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89313" stop="104415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89616" g_stop="89965" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="354" r_length="345" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89966" i_stop="90101" i_length="136">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90102" g_stop="90391" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="644" r_length="290" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90392" i_stop="91555" i_length="1164">
            <donor d_prob="0.000" d_score="0.75"/>
            <acceptor a_prob="0.744" a_score="0.57"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91556" g_stop="91597" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="684" r_length="40" r_score="0.571"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91598" i_stop="91773" i_length="176">
            <donor d_prob="0.000" d_score="0.57"/>
            <acceptor a_prob="0.855" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91774" g_stop="91820" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="726" r_length="42" r_score="0.617"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91821" i_stop="93226" i_length="1406">
            <donor d_prob="0.982" d_score="0.62"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93227" g_stop="93259" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="760" r_length="34" r_score="0.424"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93260" i_stop="96295" i_length="3036">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.561" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96296" g_stop="96333" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="795" r_length="35" r_score="0.579"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96334" i_stop="96771" i_length="438">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.836" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96772" g_stop="96785" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="809" r_length="14" r_score="0.714"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96786" i_stop="102683" i_length="5898">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="102684" g_stop="102712" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="810" r_stop="838" r_length="29" r_score="0.621"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="102713" i_stop="103474" i_length="762">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="103475" g_stop="103563" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="839" r_stop="927" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="103564" i_stop="103692" i_length="129">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="103693" g_stop="104110" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="928" r_stop="1342" r_length="415" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1401" polyA_stop="1419"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E747276" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>1350</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89616" e_stop="89965"/>
          <exon e_start="90102" e_stop="90391"/>
          <exon e_start="91556" e_stop="91597"/>
          <exon e_start="91774" e_stop="91820"/>
          <exon e_start="93227" e_stop="93259"/>
          <exon e_start="96296" e_stop="96333"/>
          <exon e_start="96772" e_stop="96785"/>
          <exon e_start="102684" e_stop="102712"/>
          <exon e_start="103475" e_stop="103563"/>
          <exon e_start="103693" e_stop="104110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTAACATTATCGTGATTTGGTTCACGTGAAAAAAACCAAGCCCACAATATCTAAAATATGTATATATATATTAGCTACTTTAAGCTTCAATGACATTTTAGTTCTTGTATTATTACATCTCTATTTTTGTGTTCTTAAACATGATGACAACAACAAGTGTTCTTTCTAGTGGATTCAACCACTCAACCCTCCCTCAATCTTACGTTCGACCTGAATCTCAAAGACCTTGCATGTCTGAAGTTGTTGATAGCGACGATCTTGTCCCAGTCATTGATATGTCTTGTACTGATAGGAACGTTATCGTTCATCAAATCGGTGAAGCTTGTCGTCTTTATGGGTTTTTTCAGGTTCTTTTTTCGTACATTCAATCCTTTCAGATGTGTTGTTATTCTCGTTTCAATTCATATAGCAACATTAGTGTTTTTTAATCACATTTTTTTTTCAAATGTTTAACTAGTAGTTATTTTGGATTTTTTTTATCAGGTGATAAATCACGGTGTGTCGAAGAAGGCGATGGATGAAATGTTAGGGGTAAGTCATGAATTTTTTAAGCTACCAGTTGAAGAAAAGATGAAATTGTATTCTGATGATCCATCTAAGACTATGAGATTATCAACTAGTTTTAATGTTAAGAAGGAAACTGTTCATAATTGGAGAGATTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTTATGTACCTTCTCTCCGATGGTGTCCTGTATGAGTGACATGTGGTTGCTTATGCCTGTAAGTACTTTGCCAGTAGTTAACTCTGTATCAAATGCCCCAATATCCTGTCTTAGCACTGTGTTTAGAAATTTCAGTCTTAAACGTGCTACTTGTCTTTGACTAGCATACATCCAGCATCCTATCTCTGCATATTCCACATTACCACTTTTTAAGTACAAAATTTATGGAGTTGAGTTTCTACTATTCCAAATCATTGATATTTTGAGTCTTGCTTATTGAAACTTTAGTATGATAGTAGTAAGGTAGTTACCCAGCACTCCAGCTGGAAATGTTGCGAAGGCCATATACCAGACATATGGGACGACCTGAAATTAAGTAAAAGCAGAACAGCTGAGTTAGGACCCTTCTCCAAGTGAATATGTATTACACTTCCAAATACTTTTGTTTCAACTTTTAACTTCAAATATTGTCTGAACACCTACTTCATGATTTTTGATATGCCAGTAAAGTTAGTTATACCTTTTTGAGTGCTCTAACCATAGCTGCTGTGTCATCAATATTGTTTCCAAATGCATCAAGTGCTTTGCCTAGCAAATAATAGCCAACAGGCTGGGCAAGTCCATGGACAATGGAACCTAATGTCCCTAAAGCCATGAGTGTCCAGTCAAGTGCATCTGCTTCACTTAGTAGTTTGTGAAATGGCAAAGTCTCAGACGTAGTTTTCTTAGTTTCATCGCCCGTATCCTCAGTTTTTTCTCTCTGCTCATCATGATCATCAATGGCTTCTCTAACTTGAGCCATCTTTCTTTCTGTTGCTTTCATGCACACGTACTTGCTCTATTTATATGCATGTGTTTTAACATATATTTAATACAAATATGTAGTTAATAACGTCCACGAGGAATATTTGCTGGGATATACCTAAGGAAATAATATACAAATATAGTAAAATCGATCATGTTTTCTGACCTTATCTTATATGGTATGTAAACACAGATTAATTAGTACGAGTTGTTGTCAAGTAGTGTTGGATCAGTTATATATTAATCAATATTCCATTATCAGGCATGAGATTATCGACAAAAGAGTTTAGTCTAAGTAACTTTGTTTATATTTTTTGTTCAAGTCTGAGGATTAAGCAGTTATAATATATTCAATTTTCTTTAAGATTTGAGTCATTGGACCAAGC-CTCTCATGTAACTGAGGAATCCAAGAAGCTAGTTCCCATAGTTATGCGTCATCTGCTATATATTCGTTATTCTGCGGTATATTCTATGAAGTATAATTGGTTTCACTTGCTTTTGATGTAACCTAATTACAAATATATTAGGGTGACATTTTAAATCGATCGGGAGTATTATTTTGATCCAATAATGTCACGTTCAGGTAAAGGTTTGTTAGAAACAATCTCTCCACCTGAGGATAGGGATAAGGTTTGTGTACATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTTTAATTATTCACTTTATGATTAATAGGGGTAAAATTATAAATCCACTATGTCAATTATTAATTTTTTAATAGATGTATCAATTTAAAAGTGTACAAGTAATTAAGAATCGAGAGAGTATATTATCTTTGTAATTAATTCCTTTTGAAAACATTTACATTCATTTGTATAAATCCACTGAAAGGTTTCAAGACGCGAAGTAGTAAAATAATCTACATATTTATGATTTCTTAATATTCATGGACAGATAAACTAATATGAAATACACACACATATATATATAATGTGATTCTTTTTTTATTAATTAAGTTTTCAAAAATATGTTTTTCTTACATTTAATGATAATAATTTAATTTTAAAAGACATTTTATTCATACTAAAATAATTTAAATAAGATAATGCTTATACTATTTCAATATTGTGATAATTCAGGTATAAAATTTATATTTTTAATATTTCAAATGCCAAATTCAAGAAACTAGGATAATTTTGGAATCGGCACTAGGTAAAACTTACTTGCATCGAATATATATGTCCAATTAATATATTCATATCATATATTTTAAATTTATAATTTATTTAATTTAATCATAATTAATTAATATATATTTACTTCACTAAATCACTTGAAAAGTGTAAATTACGTTAATTTGATGTATATAGCCGTCCACACTTACAACACCGAGGTATGCGTTACTCCGAGTCTCCGACCAAAAGAGTGAAAGCCCTAGTGTTTTGGACCGGGTCGTGTCTATTGGGCTGAATGTATTGCCATTTATGAGCCCAATAAAAATTGTCTTATTCATTCATCTCTTTTATTTTCTTTTGAACTTTTTAGTTACTTCCCTTTTTTCTTCTCATTTTTATTGAATTTACTCAATGTTATGATTTTACTTTGTTTCTTACACTTTCTTTTCCCTCCCAAATTTTTCTCCCTAAATGAAATTCTAACATTTTTTTTACAAAAAACCTTGAATGGTTTGCTGTATTTTTATGTACAAGTCACCTAATCCCTCCTATGTGAATAAACACACGCACACAATTTTCATTCATTACTAAAATTCATTGTTTTCTCTCATTTTTTTTTTATAAAGATTTAAATCTATACGCTATTGGAATAAATAAATCTGCATACTATCAAGTCATTCAAATCATATTTACAAATAAATTTTCTGTGGACTTAGAACGTGAATATGATATCTGTCTAAAAATAAAATATTGTGATCATATTAGAATAAATTAAAATAATTTAATTGTTTTACGCTAGAACTTAATTTTATAATCGGTAGGCTGTAGCCGACATCCCTAATGGACAG-CTGCACGCGAGGCTACAAGATAATATTATTCACCTTCATTTTTAATTATCATAATCCTATTATCTAAAGTTAAATATAATAATTTTAATTAGTATTTATAATATATTTATTTTATTATATTAATATATAAAAATTATAAATTATAACATTCTTTACATAATTTTTTAAATATTTAATTAAAAAATTAAATTAATATAATATAATTTAATTTTTAGAAAACTCAAAAAAGAAAGTAGGACAAAAGACTCCACGACATTGGAAACATAACAATCAATTGTGCAGCAGAAACCCATGCAGATTAGTTTAGTGCATATGTAAGCCCTTACATCATTAACTTAACATTAATTAATTTTTAAATTTAAATATATTACATTCACGTGATATACGTGAATATTTAAACAAACAATATAATTTGATATTTAACAAAATGTATATACGTACAAATTGTACAGAAAATACTATACATAGTACAATATTTTACATATTAATAGAAAATATATCGTAAAATATTAGTTAAATTTTTTGTATCATTTGATTCTAAAAAAGAAAACTATGATAACTAGAAGTGAATGAAAGAAGTATATAGAAAGATAATTTTACTATATTATATTTGAGTATAATAAATTCAGTATTATAAAAAGTCAAATTTGATGTTTTAATTTACAAGACACAACAAATATTTTACAATGATGTTTTTTTATCATATCAATATACAAAAATATTGCTATTAATGATATTTTCGTAGTGTTTTTGAATATCTAATTTCAAATTAACTTTCTAAAAATGCTATGTGGTGGGCGAATACTAACTACTTTGCGAGGAATATGTCAATGTCTATACTGGACGAAAAGAATACTTATATAAACACCTTTCTTGTTTCTTCATTTACTACTAAAAATCATTTAACAATACAGATATTTCAGTTCAGTTCTTACTAAAAATGGCTTGTGAGTCAAGATTAGAAGAGCTAAATTTTGTTTTGGTACCATTACTTGCTGTAAGTCACATCATACCCATGGTAGACATTGCCAAATTGTTAGCACAAAGAGGCGTGATTGTCACTTTAGTCATGACGCCTCTTAATGCTATGCGATTTACTGCAGCAATTGATCGCGCCATTGATTCTGGACTCCTCATTCGGGTACTTCATCTCCGTTTTCCAGCCAAGGAAGCGGGATTGCCTGAGGGATGTGAAAGTGTCGATCTTCTCCCCGGTCTAGCTTATCGAAGAAATTTTTTTACTGCAATTGATATGTTACAAGACCAAGCTGAAAAATTGCTTCAAGAGATTCAGCCTAAGCCGAGTTGCATTATTTCCGATATGCATATTGCTTGGACAGCTGAAACAGCTGATAAGTTTCAGATTCCGAGAATTATTTTTGATGGAATGAGTTGTTTCAATCAGTTGTGTATGCATAATTTGTATATCATGAAGGATCAAAACAGAATCCCTGAATCAGGGCATTTTGTGATCCCTGATTTGCCTGATACAATTGAAGTAACTAAAGTTCAGCTACCTGGAGCGTTTAATCCCCCGCCACTTCACGTGCAAGACTTTCGAGACAAAATACGAGCAGCTGAAATAAGTGCCTATGGGGTTATAATCAATACTTTTGCGGAGTTGGAAGAAAATTATGTTGATGAATTCAGAAAACTTAAAAATGGTAGAGCTTGGTGTGTAGGTCCTTTGTCTCTCTGTAACAATGAGAGTCTAGATAAAGCGCAGAGAGGGAATATGACGTCATTTGACGAAGAGGAACGTTTGAAGAAATGGCTTGATTCATGGCAGCCTGAGTCTGTTGTGTATGCGTGTTTGGGAAGCCTTAGTCAGACCACAGTTGTACAGTTTGCGGAGCTGGCTTTAGGCCTGGAAGCATCAGGTTATCCGTTTATTTTAGTCGTAAAATCAGGGGAAAGACAAGCACCAATAGAGGAATGGATATCGGAAAATGGATTTGAAGAAAGAATAAAAGAGAGAGGGCTTTTGATCCGGGGCTGGGCACCACAAGTAGTAATTCTATCACACCCTGCGATTGGTGGGTTCTTGACTCATTGTGGTTGGAATTCGTCCCTTGAAGGGATTAGTGCTGGTGTGCCTATGATCACTTGGCCTTTATTCGCGGAGCAGTTTTTAAACGAGAGATTTTTAGTACATGTCTTGAAGACGGGCGTGAGTGTTGGATCTCAGGAAGTTGTGCATTTCGGTGAGGAAGAGAAATATGAAGTCCAAGTGAGCAAAGAAGAAGTGACGAAAGCCATAAAAGAAGTGATGGACAAAGAGAAAAAAGCAAATAATAGGAGAATAAGAGCCAAAGAAGTTAGAGAAATGGCAAAAAAAGCTATAGAAGAAGGTGGATCTTCTCATCTCAGTTTGACACTACTAATCAAAGAAGTACAAGAATTCAACTAAACCAATTAGCTTAAAATGATTATGCACAAGCACGCAGTGTACTTTCTTTGATTTTTATGTTTTTGGTAGCGCAAGCGAAATCAGGGAAGGGATTAGAAAGTGAAGAATCAAACCCTCACAGGTGAAATTCAGACAACCAATCAACTGAACTACTAAGATTCCCCAATTATTTTTGTACACGAATACGACAAGACACAGTTATATATTAATTTTGCCAGTTTCAACTTTCAACAATGAGTTTTATATTAAGTATAATTAAGTGATTGGTGACTGTATTGCCACATAAAAGGAAGTGTTGTCTCATAATGTAGTTTGCCAAAATTCAACACGCATTACAACATATCCCAATTAAGTAAATCTTACTGGTGCTCGTTCAACTTTGTTAGCTGACTTATCTCATGAAATGTCGAGTTGCATATGGTCAGAATTTCTTGATAACTTATATAATTGCTCGAAGTGCCGTAATGGACTACTACACTTGAGGCTACAAGATTAACTTAGTGCAGATTAATTTAATGCAGATGTAAGCCCTTACATCATAACATTAAGAAGTACTAACACTACTAATATAATATAAAAGTACATTTTATCTTTCTTCATTTGCAACTGAATCATATTAAAGATGGTTACAGAAACAGAGTTAAACTTTGTTTTGATACCATTACTTGCTGCAAGTCACATCATACCCATGGTGGACATGGCAAAACTGTTAGCAGGGAGAGGCGTTACTGTCACTCTAGTCATGACGCCCCTCAATGCTATCCGATTCACTGCAGTAATTGATCGTGTCATTGGTTCTGGACTACTCATTCGGGTACTTGAACTCCAGTTTCCAGCCAAGGAAGTAGGACTGCCTGAGGGATGTGAAAGTGCGGATCTTCTGCCAGCTCTAGCCTTTCGAAGAAATTTCTTTGCTGCAATTGATATGCTACAAGACCAAGCTGAAAAATTGCTTGAACAGATGAAGCCTAAGCCAAGTTGTATTATTTGTGATACTCATATTGCTTGGACAGCTGAGACAGCTGATAAGTTTCAGATTCCAAGAATTATTTTTGATGGAATGAGTTGTTTCACTCAATTATGTATGCATAATTTGTACGTCATGAAGGATAAAAACGAAATTCCTGAATCAGGGCCTTTTGTCATCCCTGATCTGCCTGATAGAATTGAAGTAAGCAAAGGTCAGCTGCCTGGAGCATTCAATCCAGGAAAACATTGCATACAAGATATTCGAGACAAAATACGAGCAGCTGAAACAAGAGCCTATGGGGTTGTAATCAATACTTTCGAGGAGTTGGAAGAAAGGTACGTTGATGAATTCCGAAAACTTAGAAATGGAAGAGTTTGGTGTATTGGACCTTTGTCTCTATGTAACAATGACAATCTAGATAAAGCTCAGAGAGGGAATAAGACGTCAGTTGACAAGGAGGACAGTCTAAACAAATGGCTTGATTCTTGGCAGCCTGAGTCTGTTGTCTATGCATGTCTTGGGAGTCTCGGCCGTATTACAATTGTACAATTTGTTGAGCTAGCTTTAGGCCTGGAAGAATCAGGTTGTCCATTCATTTTAGTCATAAAAACAGGGGAAGGACAAGCACCAATAGAGGACTGGATATTGAAAAATAGATTTGAGAAAAGAACAAAAGAAAGAGGGCTTTTGATCCGTGGCTGGGCACCACAAGTATTGATCCTATCACATCCTGCGATTGGAGGGTTCTTAACTCATTGTGGTTGGAATTCGACCCTCGAGGGGATCACTGCTAATGTGCCTATGATCACTTGGCCTTTATTTTCCGAACAGTTTCTGAACGAGAGATTCTTAGTGCATGTCTTAAAAACAGGTGTGAGTGTTGGATGTCAAGGAGTTATGCATTTGGGAGAGGAAGAGAAACCTGAAGTCCAAGTGAACAAAGAAGAAGTGACTAAAGCCATTAAAAAAGTGATGAACAAAGAGAAAGAAGGAAACGATAGGAGAAAAAGAGCCAAAGAAGTTGGACAAATTGCAAAAAAGGCAATAGAAAATGATGGATCTTCTCATCTTAGTTTAATACTTCTAATCAAAGAAATACAAGAATTCCAACTCAACAAATCTTGAATTGAAAATGCACTAGTAGTATGGAATGTACTTCTTTGAGAATTATAGTGTGTTATACTGTTCAACAATTTGTTTGAGCCCACAAGTTACTTGTGTGGTCTTAAGAAAATTATAACCGCGGCCATACAAATTACAGAACTCCAACAAACTCAAATGGCATAGCAATGAATATAAGCACAAAAATTCTCCTCTTCATTACCATGACTCAATAATTGATATAGCAAGTCCCCTTCTAAAATGAAATGTACTGCCTGGCAATTATTGGATTTCTCTCACCTCTACACATGTTACACGAAATTCTGACTGTTAATGGGACTTGTCTTTCATTTTGCTCCTTTTTTCCTAACTTTAACATCATATAAATAACCAATTCTTTATCATGTCATGAGCGTCTAAATGACATAATAACTCTTCACAAATATGTGGTGAAGAGTTTTCTGAGGTGTAGAATTGGCACTTAAATATTAACTGCTGGAGTTTGATGGATATCAAAAGTACTCATTTTTTGAAAAACTTGAAGGAGCAAAACTACTCAACAAACTATAGCCTTTTCAGTTCTTATTGAGTAAAGATGACAACAGTGCCAGCATTAGCAGAGCTAAACTTTGTTGTGATACCTTTACTTTCTACAAGTCACCTCATACCCCTGGCGGACATGGCTAAATTGTTAGCGCAGCAAGGAGTGACAGTCACGTTAGTCACGATAGCTCTAAATGCCGCCAGATTCACTGCAGCGATTGATCGTGCCATTCATTCTGGACTCCTCATTCGGGTAGTGGAGCTCGAGTTTAACGGTAAGGAAGCAGGACTGCCAGAGGGGTGTGAAAACCATAACGATGTGCCTGGTCTGAACTATCGAAGACAGTTCTTTGCTGCAATTGATATGCTGCAAGAACAGGCTGAAAAATTACTTGAAGAGATGAAGCCTAAACCGAGTTGCATTATTTCTGATGCATATGTTGCTTGGACAGCTGATACAGCTGATAAGTTTCAGATTCCAAGAATTGTTTTTGATGGAATGAGTTGTTTTACCCAAATGTGTATGCATAATATGTACATTTTGAGGGATCAAAACAAAATTCCTGAATCAGGGACTTTTGTCATACCTGATTTGCCAGATAGAATTGAAGTCACAAAAGCTCAGCTGCCTCCACATTTCAATCCTGCAGGAGCAGTTTTCATACAAGATATTCATGACAAAATAAGAGTGTTAGGATCGAAAATAAGCAGGTGTAAACGCGGAAGCTAGCAAAATAAACCTTGAAAGATCATGAGTAAGAAGACAAACGAGAAATATATTAAAAGACACAATTTAACGTGGTTCGGTCAATCAATCTACGTTCACAAAGGAAATTAGCAATTCACTATAAATAGGAGAGTACAAATACAGAGGTAAACAACCTCAACCAAATTCACTCAGAATACATGGGAGGTTCATACAAGTGATAACGTATCAATCTTGTGACCCACAATTTCTCCTCCTAACCAAAACTCTCAAAGGCATTAAGAGTATAATGTGAATGCTGATTAAGTTAGAAAGAACATTCATCTTAAACCTTTTTCTACAAAAAAGAATTAGTGAATCCAAAACCTTTTACTAAAAGGAAAACCTATTTATGGTAAGAAATCAGAACAAATAAAACCCAACACAGCTAAAAAAGAGCATATGGGGTTGTGATCAATACTTTCGAGGAGTTGGAACAAAGGTATGTAGACAAATTCTGAAAACTTAAAAATGGTAGAGTTTGGTGCATTGGAACTTTATCTCTTTATAACCATGACAATCTTGATAAATTTCAGAGAGGGAATAAGGCTTCGTTTGACCAAGAGGACAGTTTGAAGAAATGGCTTGATTCTTGGGAGCCTGAGACTTTTGTGTATGCCTGTTTTGGCAGCCTCGGTCGTTGTGCAGAAATACAATTTGTGGAGCTTGCTTTAGGCCTAGAAGCATCAGGTTATCCATTCATTTTAGTCATAAAAACAGGGAAAGGACAAGCACCAATTGAGGAGTGGATTTGAGGAAAGAACAAAAGAAAGAGGGCTTTTCATACGCGGGATGGTCACCACAAGTACTAATTCTATCACACCCTGACTCATTGTGGTTGGAATTCAACTGTCGAAGGGATTAGTGTTGGTGTACCTTTAATCACATGGCCTTTATTCGCGGAGCAGTTTCTTAATGAGAAGTTATTAGTACAAGCATTGAAGATTGCTGCGGGTGTTGAATCTTGATCCAAGGAATACTTGATCCTTTGTTTGTTTAGTAGTTCAAAGTATGTATGTTTGTAATTACCCAGAAATTTCAATTTCAACTTTTATTCACACAAGACTTCAAACTACAAAAGACAACAACAGTAAAGATAGTCAGAACGCCCTTCGTTGAAAAATTATATCGAATATATAGGCAAAATATAATCTAATATCTAGATATATTATAAATTGAACACTCTTCACATAACAAAGACAAACAATCTAGTGGTAAAGACAGAAATTTTAATTATTTAATTATTGTGCACCTACTCTATCGGTTATGTTCTCCCAGATTTTCAAGTTGCACCAACTCAAAATTCACATCACTGCCTATCTAGATCCCGGAAAGAATCAAAAGGATAATATTGACAAATTACGCTTTAATTAATTAATGTCTTTAAATATCTTTATTAAAAGGTGTGTCATGTCCCAACAATCCATTTATCTAGGACTAATTAGAGTCGTTAATTTGAACTACGTCGATCGATTGAGTAGAGTTGAACTAAGATTTTTGAAGCCTATTTAAAAGGGAAAAGGGTTGTATTTGCCCTTATACTCTTAGAAAAGGATCATACTTGCCTTTCGTCATACTTTTTTGATATATTTACCTTTGTCATCAAACTTTAAAGCCATATTAATCCTCCTTCCATTAAATCTCCATATTTTACTTAATATCTTTTATGTTGTGCCTATGTGGGTTTTATTTTTATCTAATTAAATCAAAATATTATTATATTCATTTAAACCCACCCTCATTAAATTAAACCCCATCCACCAATGAACCCAGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGCTTTGATTTTTTTTAAAAAACAAAATTTGTGCATATATCAAAGATTTTTTATATATAGTTCTTGATTTGAAGAATAATGGATGAAATTGCTATAAATGATTTTTTTGGTGTATCAATAAATGCAGTGATAGGAATGATTTCAAGATGGTGAAGAACTTTGGTGGTGTCATAGATTTGATTTATGTTGTTGTGAAGAAGAAAGAAAATTAATAAGAAATTAATAACTAAAAATACACATTTATTATTTGTGTTGGTTTTCACTCTCTCTAAGAGAGTGAGATACACTCACTGTGCCACGTAAGCATCTAGGGAGTAAATTATTTCAGTTTTAAACAATTCAGGAGGGTGATAGGATATTCGTTAAGTTGGAGTATGTAGTTGAATTTCAGATATAGACCGAAGAGCTTTAGACCATTTTCTCTATGGTCGCATATCTTTTTACACACAAAACAAAATTGATTCACTTCCAAGATTCTATATTTTCTCTTCTTAATATTTGTTTCAATGGCGAATGCATCCTTAAAGTTACCAAAGAAAGGCATTGCTTCTTATTTAGGCTATCCAAGATCCAAGAAATGCTAAACCCAAATGTGACATTTTGCGGCTAATGAATTTTGCAAATTAAAAGCAACTTCACACTTTGGATTTTGTATCCAATATGTTCAAATTCCTTCTTCTTTTTTTTTTTTGGTTAAATAATTCGATATACAAATATGTTAACGATGAATCATTTTTTTCCTATTCTATTTCCTACAAGGACAGGACATTAGAAAAAGGCGATAAATAATATGCTTATGAACATAATTTCCAGTAAAACGATTTCATTTTCATTGCTTTTGTGCTCGTTCTTTTCTTACACTTTTGCTTACAATTTCATTATTCGTAATAACTGTCCTTTTACCATATGGCCTGGTACACTGGCTGGTGCGGGAACTCCTCCACTTCCCGCGACTGGCTTTCGATTAGATGCAGGGCAAAGCATCACAATTCCAAGTGTAGCTGGTTGGTCAGGGAGAATATGGGCTAGAACTGGCTGCACTTTTGATGCATCAGGTATTGGCTCGTGTCAAACAGGCGATTGTGGTGGGAAGCTTGAATGTAGTGGGCTTGGTGCCACGCCACCTGCCTCCCTCTTCGAGATAACTCTTGGCGTGGGAGACAACAAAGATTTCTATGATGTTAGTATTGTTGATGGCTATAATTTACCAATGGTTGCTCTACCTCAAGGCGTCAACGGGGGATGCAATGCCACTGGCTGCCTCTCAAATCTTAACATGGGTATTTTCTCATCACTCTGTTATATCAGCTCTAAATCGCAAAGTTAAGGGATATATCAATAGATTGAGTTACTTTTTTTAGAAGAATAATTTCGTTTTTTTTTAACAAAATGGAACAGGTTGTCCAAAAGAACTTCAAGTGATGGGTGAATATGGAGGAGAAGGGAATGTGGTGGCTTGCAAGAGTGCATGTGAGGCTTTTGGTTTAGACCAATATTGCTGTGCAGGACAGTTTGCAAATCCAACAACTTGTCAACCATCTTTTTACTCAACTATATTTAAGAATGCTTGTCCAAGGGCTTATAGCTATGCATTTGATGATGGCACTAGCACTTTTACATGCAAAGCTAATGACTATGCAATCATATTTTGCCCAATGAATGGGTACTCTCTCAAAACTTTCATCATCTTAAATGTTCCGTCCATTCCAATTTACGTGTAACTCTTTTCGTTTTAGTCTGTCAAAAAAAAATAATGTAATCTATTTTTAAACTTCATGTTCAGTCAAATATCGTCTTGAA-TTTTGAAACAGGGTAAAGAGGCCTAATGAAGAAGGATCAACAACTCAAGCAACTCAGCCTATTGAAGAGAGTAAAACTGGAAAGTTTGCAGAAACAATGGCGTCAACTTCAAACATTATACTCCTTCCTTTTCCAATGTTGATTCATATGTTGCTAATTTTCAGCTTACATCTCTTAGCATCTATATATTATTCACTTATTAAGATAAAAAAAAAATGTTACTTTTCAAATACAATAAAATGACTATGTCATTCACTTTTTTTTTTTTGAATCTTGAAAAACATTTCCCTCAATGAGTACACCACAAAAGATTAATCTCAAATTGCATGAATCTAAACCTTAAGTGGGCCATAAATAAGTATGATTTGGTATAAAGACAGCTAATTTTTTATTTTTTTTAAAAAAAGAGAAAAGTATTGAAAACATGATTTCTGAGTTTGACACAAATTATAGTTTCGTTTTTGAAATGTTGACAGCTTTAAAAATAATCTCTACTCGACTAACTAAACTTAGATACACCCACGATCTGTCACATGAAATAACAAGCAGTGTCAAACTCTAAACTCGCTTTTAATTAATTAATCTCAAATTGCATGAATCTAAACCTTAATTAAACCATAAATAAGTATTATTCGGTATAAAGACAATTCTTTTTTAAGAAACAAGAGAGAATTGTTGAAAACAGGACGTCCGAACTTGCCACAAATTATTTATTCCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGCCTAATGCCTTTGTCATCAATCTTGGTGATCAATTGGAGGTAAACACGTCTTTCTCTGTTTCTGTTTCAATTTATGTGATATCAGACTTGCACATCGTCTGAAAATACAACTAATTAGATAAAAGAGTATAAACTTTTAGATGAAATAATTATTTATCGTGTGTGCAGGCGTTGAGTAATGGGAAGTATAAAAGTATATGGCATAGAGCTATTGTAAATTCAGACAAAGCAAGGATGTCTGTGGCTTCTTTTCTCTGTCCCAATGATTGTTCCATTATCAGTGCTCCAAAAACCTTAACTGAAGATGGATCTTCTGCAATTTATCGAGATTTCACTTATGCTGAATATTATGAAAAATTCTGGAGCAGGAATTTAGATCAGGAATATTGTTTAGAACTTTTTAAGAACGATGGAACCTAGTACTTGTATGAGTTTATTACTTTTGTATCGACCTAAGTGTGGTTGTCACACAATTATGTTAGGAAACAATCACTTGATATAGTTCAGATATGAAATTCGCAAAAAAAAAAATGATACTTCAAGTATGTAAAACTTTTTTTGTTCTTTTTCTCTGGCATTATCATCT</genome_strand>
        <mrna_strand>TAATTAACATTATCGTCATTTGGTTCACGTGAAAAAAACCAAGCCCACAATATCTAAAATATG--TATATATATTAGCTACTTTAAGCTTCAATGACATTTTAGTTCTTG---TATCACATCTCTATTTTTGTGTTCTAAAACATAATGACAACAACAAGTGTTCTTTCTAGTGGATTCAACCACTCAACCCTCCCTCAGTCTTACGTTCGACCTGAATCTCAAAGACCTTGCATGTCTGAAGTTGTTGATAGCGACGATCTTGTCCCAGTCATTGATATGTCTTGTACTAATAGGAACGTTATCGTTCATCAAATCGGTGAAGCTTGTCGTCTTTATGGGTTTTTCCAG........................................................................................................................................GTGATAAATCACGGTGTGTCGAAGAAGGTGATAGATGAAATGTTAGGGGTAAGTCATGAATTTTTTAAGCTACCAGTTGAAGAAAAGATGAAATTGTATTCTGATGATCCATCAAAAACTATGAGATTATCAACTAGTTTTAATGTTAAGAAGGAAGCTGTTCATAATTGGAGAGATTATCTTAGGCTACATTGTTATCCTTTGGACAAATATGCCCCTGAATGGCCTTCTAATCCTCCTTCTTTCAGGGAAATAGTAAGCAAATATTGCATGGAAGTTAGAGAGCTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAT-AG--ATTGGAAGAAGCAATATCAGAGAGCTTAGGGCTT................................................................................................................................................................................GAGAAGGATTG-TATAAAAAATGTGT-TAGGTGA--ACAAGGACAA-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGGCTATCAATTTTTATCCTCAGTGTCCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTGAATT-AAC-TT-ATGGGTTACCAGCCCATACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCAAATGCAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAT-TCTTCTTCAAGATTTGCAAGTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCCTTCAAGTTCTTAAGGATGGAAAATGGCTATCTATTAAACCTCAGCCTAATGCCTTTGTCATCAATCTTGGTGATCAATTGGAG.................................................................................................................................GCGTTGAGTAATGGGAAGTATAAAAGTATATGGCATAGAGCTATAGTGAATTCAGACAAAGCAAGGATGTCTGTGGCTTCTTTCCTCTGTCCCAATGATTGTTCCATTATCAGTGCTCCAAAAACCTTAACTGAAGATGGATCTTCTGCAATTTATCGACATTTCACTTATGCTGAATATTATGAAAAATTCTGGAGCAGGAATTTAGATCAGGAATATTGTTTAGAACTTTTCAAGAACGATGGAACCTAGTACTTGTATGAGTTTATTACTTTTGTATCGACCTAAGTGTGGTTGTCACACAATTATGTTAGGAAACAATCACTTGATATAGTTCAGATATGAAACTCGC---AAAAAAAATGATACTTCAAGTATGTAAAACTTTTTTTGTTCTTTTTCTCTGGCATTATCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374224" ref_strand="+" ref_description="SGN-E374224 [TUS-33-L7]">
      <seq>tgaacccattaattaacattatcgtcatttggttcacgtgaaaaaaaccaagcccacaatatctaaaatatgtatatatattagctactttaagcttcaatgacattttagttcttgtatcacatctctatttttgtgttctaaaacataatgacaacaacaagtgttctttctagtggattcaaccactcaaccctccctcagtcttacgttcgacctgaatctcaaagaccttgcatgtctgaagttgttgatagcgacgatcttgtcccagtcattgatatgtcttgtactaataggaacgttatcgttcatcaaatcggtgaagcttgtcgtctttatgggtttttccaggtgataaatcacggtgtgtcgaagaaggtgatagatgaaatgttaggggtaagtcatgaattttttaagctaccagttgaagaaaagatgaaattgtattctgatgatccatcaaaaactatgagattatcaactagttttaatgttaagaaggaagctgttcataattggagagattatcttaggctacattgttatcctttggacaaatatgcccctgaatggccttctaaatcctcttctttcagggaaatagtaagcaaatattgcatggaagttagagagcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89313" stop="90583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89616" g_stop="89965" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="354" r_length="345" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89966" i_stop="90101" i_length="136">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90102" g_stop="90392" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="645" r_length="291" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E374224" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89616" e_stop="89965"/>
          <exon e_start="90102" e_stop="90392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTAACATTATCGTGATTTGGTTCACGTGAAAAAAACCAAGCCCACAATATCTAAAATATGTATATATATATTAGCTACTTTAAGCTTCAATGACATTTTAGTTCTTGTATTATTACATCTCTATTTTTGTGTTCTTAAACATGATGACAACAACAAGTGTTCTTTCTAGTGGATTCAACCACTCAACCCTCCCTCAATCTTACGTTCGACCTGAATCTCAAAGACCTTGCATGTCTGAAGTTGTTGATAGCGACGATCTTGTCCCAGTCATTGATATGTCTTGTACTGATAGGAACGTTATCGTTCATCAAATCGGTGAAGCTTGTCGTCTTTATGGGTTTTTTCAGGTTCTTTTTTCGTACATTCAATCCTTTCAGATGTGTTGTTATTCTCGTTTCAATTCATATAGCAACATTAGTGTTTTTTAATCACATTTTTTTTTCAAATGTTTAACTAGTAGTTATTTTGGATTTTTTTTATCAGGTGATAAATCACGGTGTGTCGAAGAAGGCGATGGATGAAATGTTAGGGGTAAGTCATGAATTTTTTAAGCTACCAGTTGAAGAAAAGATGAAATTGTATTCTGATGATCCATCTAAGACTATGAGATTATCAACTAGTTTTAATGTTAAGAAGGAAACTGTTCATAATTGGAGAGATTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTTATG</genome_strand>
        <mrna_strand>TAATTAACATTATCGTCATTTGGTTCACGTGAAAAAAACCAAGCCCACAATATCTAAAATATG--TATATATATTAGCTACTTTAAGCTTCAATGACATTTTAGTTCTTG---TATCACATCTCTATTTTTGTGTTCTAAAACATAATGACAACAACAAGTGTTCTTTCTAGTGGATTCAACCACTCAACCCTCCCTCAGTCTTACGTTCGACCTGAATCTCAAAGACCTTGCATGTCTGAAGTTGTTGATAGCGACGATCTTGTCCCAGTCATTGATATGTCTTGTACTAATAGGAACGTTATCGTTCATCAAATCGGTGAAGCTTGTCGTCTTTATGGGTTTTTCCAG........................................................................................................................................GTGATAAATCACGGTGTGTCGAAGAAGGTGATAGATGAAATGTTAGGGGTAAGTCATGAATTTTTTAAGCTACCAGTTGAAGAAAAGATGAAATTGTATTCTGATGATCCATCAAAAACTATGAGATTATCAACTAGTTTTAATGTTAAGAAGGAAGCTGTTCATAATTGGAGAGATTATCTTAGGCTACATTGTTATCCTTTGGACAAATATGCCCCTGAATGGCCTTCTAAATCCTCTTCTTTCAGGGAAATAGTAAGCAAATATTGCATGGAAGTTAGAGAGCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362964" ref_strand="+" ref_description="SGN-E362964 [cLPP-2-E20]">
      <seq>tgaacccattaattaacattatcgtcatttggttcacgtgaaaaaaaccaagcccacaatatctaaaatatgtatatatattagctactttaagcttcaatgacattttagttcttgtatcacatctctatttttgtgttctaaaacataatgacaacaacaagtgttctttctagtggattcaaccactcaaccctccctcagtcttacgttcgacctgaatctcaaagaccttgcatgtctgaagttgttgatagcgacgatcttgtcccagtcattgatatgtcttgtactaataggaacgttatcgttcatcaaatcggtgaagcttgtcgtctttatgggtttttccaggtgataaatcacggtgtgtcgaagaaggtgatagatgaaatgttaggggtaagtcatgaattttttaagctaccagttgaagaaaagatgaaattgtattctgatgatccatcaaaaactatgagattatcaactagttttaatgttaagaaggaagctgttcataattggagagattatcttaggctacattgttatcctttggacaaatatgcccctgaatggccttctaatcctccttctttcagggaaatagtaagcaaatattgcatggaagttagagagcttggatatagattggaagaagcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89313" stop="90583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89616" g_stop="89965" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="354" r_length="345" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89966" i_stop="90101" i_length="136">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90102" g_stop="90389" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="642" r_length="288" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E362964" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89616" e_stop="89965"/>
          <exon e_start="90102" e_stop="90389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTAACATTATCGTGATTTGGTTCACGTGAAAAAAACCAAGCCCACAATATCTAAAATATGTATATATATATTAGCTACTTTAAGCTTCAATGACATTTTAGTTCTTGTATTATTACATCTCTATTTTTGTGTTCTTAAACATGATGACAACAACAAGTGTTCTTTCTAGTGGATTCAACCACTCAACCCTCCCTCAATCTTACGTTCGACCTGAATCTCAAAGACCTTGCATGTCTGAAGTTGTTGATAGCGACGATCTTGTCCCAGTCATTGATATGTCTTGTACTGATAGGAACGTTATCGTTCATCAAATCGGTGAAGCTTGTCGTCTTTATGGGTTTTTTCAGGTTCTTTTTTCGTACATTCAATCCTTTCAGATGTGTTGTTATTCTCGTTTCAATTCATATAGCAACATTAGTGTTTTTTAATCACATTTTTTTTTCAAATGTTTAACTAGTAGTTATTTTGGATTTTTTTTATCAGGTGATAAATCACGGTGTGTCGAAGAAGGCGATGGATGAAATGTTAGGGGTAAGTCATGAATTTTTTAAGCTACCAGTTGAAGAAAAGATGAAATTGTATTCTGATGATCCATCTAAGACTATGAGATTATCAACTAGTTTTAATGTTAAGAAGGAAACTGTTCATAATTGGAGAGATTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTT</genome_strand>
        <mrna_strand>TAATTAACATTATCGTCATTTGGTTCACGTGAAAAAAACCAAGCCCACAATATCTAAAATATG--TATATATATTAGCTACTTTAAGCTTCAATGACATTTTAGTTCTTG---TATCACATCTCTATTTTTGTGTTCTAAAACATAATGACAACAACAAGTGTTCTTTCTAGTGGATTCAACCACTCAACCCTCCCTCAGTCTTACGTTCGACCTGAATCTCAAAGACCTTGCATGTCTGAAGTTGTTGATAGCGACGATCTTGTCCCAGTCATTGATATGTCTTGTACTAATAGGAACGTTATCGTTCATCAAATCGGTGAAGCTTGTCGTCTTTATGGGTTTTTCCAG........................................................................................................................................GTGATAAATCACGGTGTGTCGAAGAAGGTGATAGATGAAATGTTAGGGGTAAGTCATGAATTTTTTAAGCTACCAGTTGAAGAAAAGATGAAATTGTATTCTGATGATCCATCAAAAACTATGAGATTATCAACTAGTTTTAATGTTAAGAAGGAAGCTGTTCATAATTGGAGAGATTATCTTAGGCTACATTGTTATCCTTTGGACAAATATGCCCCTGAATGGCCTTCTAATCCTCCTTCTTTCAGGGAAATAGTAAGCAAATATTGCATGGAAGTTAGAGAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352075" ref_strand="+" ref_description="SGN-E352075 [cTOS-13-B8]">
      <seq>gatgaaattgtattctgatgatccatctaagactatgagattatcaactagttttaatgttaagaaggaaactgttcataattggagagattatcttaggctacattgttatcctttggacaaatatgcccctgaatggccttctaatcctccttctttcagggaaatagtaagcaaatattgcatggaagttagagagcttggatatagattggaagaagcaatatcagagagcttagggcttgagaaggattgtataaaaaatgtgttaggtgaacaaggacaacatatggctatcaatttttatcctcagtgtccacaacctgaattaacttatgggttaccagcccatacagatccaaatgcaattacaattcttcttcaagatttgcaagtggctggccttcaagttcttaaggatggaaaatggttatctattaaacctcagcctaatgcctttgtcatcaatcttggtgatcaattggaggcgttgagtaatgggaagtataaaagtatatggcatagagctattgtaaattcagacaaagcaaggatgtctgtggcttcttttctctgtcccaatgattgttccattatcagtgctcccaaaaccttaactgaagatggatcttctgcaatttatcgagatttcacttatgctgaatattatgaaaaattctggagcangaatttagatcangaatattgtttagaactttttaagaacgatggaacctagtacttgtatgagtttattactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89888" stop="104268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90188" g_stop="90391" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90392" i_stop="91555" i_length="1164">
            <donor d_prob="0.000" d_score="0.75"/>
            <acceptor a_prob="0.744" a_score="0.57"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91556" g_stop="91597" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="244" r_length="40" r_score="0.571"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91598" i_stop="91773" i_length="176">
            <donor d_prob="0.000" d_score="0.57"/>
            <acceptor a_prob="0.855" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91774" g_stop="91820" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="286" r_length="42" r_score="0.617"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91821" i_stop="93226" i_length="1406">
            <donor d_prob="0.982" d_score="0.62"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93227" g_stop="93259" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="320" r_length="34" r_score="0.424"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93260" i_stop="96295" i_length="3036">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.561" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96296" g_stop="96333" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="355" r_length="35" r_score="0.579"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96334" i_stop="96771" i_length="438">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.836" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96772" g_stop="96785" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="369" r_length="14" r_score="0.714"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96786" i_stop="102683" i_length="5898">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="102684" g_stop="102712" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="398" r_length="29" r_score="0.621"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="102713" i_stop="103474" i_length="762">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="103475" g_stop="103563" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="487" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="103564" i_stop="103692" i_length="129">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="103693" g_stop="103968" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="763" r_length="276" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E352075" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90188" e_stop="90391"/>
          <exon e_start="91556" e_stop="91597"/>
          <exon e_start="91774" e_stop="91820"/>
          <exon e_start="93227" e_stop="93259"/>
          <exon e_start="96296" e_stop="96333"/>
          <exon e_start="96772" e_stop="96785"/>
          <exon e_start="102684" e_stop="102712"/>
          <exon e_start="103475" e_stop="103563"/>
          <exon e_start="103693" e_stop="103968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAATTGTATTCTGATGATCCATCTAAGACTATGAGATTATCAACTAGTTTTAATGTTAAGAAGGAAACTGTTCATAATTGGAGAGATTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTTATGTACCTTCTCTCCGATGGTGTCCTGTATGAGTGACATGTGGTTGCTTATGCCTGTAAGTACTTTGCCAGTAGTTAACTCTGTATCAAATGCCCCAATATCCTGTCTTAGCACTGTGTTTAGAAATTTCAGTCTTAAACGTGCTACTTGTCTTTGACTAGCATACATCCAGCATCCTATCTCTGCATATTCCACATTACCACTTTTTAAGTACAAAATTTATGGAGTTGAGTTTCTACTATTCCAAATCATTGATATTTTGAGTCTTGCTTATTGAAACTTTAGTATGATAGTAGTAAGGTAGTTACCCAGCACTCCAGCTGGAAATGTTGCGAAGGCCATATACCAGACATATGGGACGACCTGAAATTAAGTAAAAGCAGAACAGCTGAGTTAGGACCCTTCTCCAAGTGAATATGTATTACACTTCCAAATACTTTTGTTTCAACTTTTAACTTCAAATATTGTCTGAACACCTACTTCATGATTTTTGATATGCCAGTAAAGTTAGTTATACCTTTTTGAGTGCTCTAACCATAGCTGCTGTGTCATCAATATTGTTTCCAAATGCATCAAGTGCTTTGCCTAGCAAATAATAGCCAACAGGCTGGGCAAGTCCATGGACAATGGAACCTAATGTCCCTAAAGCCATGAGTGTCCAGTCAAGTGCATCTGCTTCACTTAGTAGTTTGTGAAATGGCAAAGTCTCAGACGTAGTTTTCTTAGTTTCATCGCCCGTATCCTCAGTTTTTTCTCTCTGCTCATCATGATCATCAATGGCTTCTCTAACTTGAGCCATCTTTCTTTCTGTTGCTTTCATGCACACGTACTTGCTCTATTTATATGCATGTGTTTTAACATATATTTAATACAAATATGTAGTTAATAACGTCCACGAGGAATATTTGCTGGGATATACCTAAGGAAATAATATACAAATATAGTAAAATCGATCATGTTTTCTGACCTTATCTTATATGGTATGTAAACACAGATTAATTAGTACGAGTTGTTGTCAAGTAGTGTTGGATCAGTTATATATTAATCAATATTCCATTATCAGGCATGAGATTATCGACAAAAGAGTTTAGTCTAAGTAACTTTGTTTATATTTTTTGTTCAAGTCTGAGGATTAAGCAGTTATAATATATTCAATTTTCTTTAAGATTTGAGTCATTGGACCAAGC-CTCTCATGTAACTGAGGAATCCAAGAAGCTAGTTCCCATAGTTATGCGTCATCTGCTATATATTCGTTATTCTGCGGTATATTCTATGAAGTATAATTGGTTTCACTTGCTTTTGATGTAACCTAATTACAAATATATTAGGGTGACATTTTAAATCGATCGGGAGTATTATTTTGATCCAATAATGTCACGTTCAGGTAAAGGTTTGTTAGAAACAATCTCTCCACCTGAGGATAGGGATAAGGTTTGTGTACATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTTTAATTATTCACTTTATGATTAATAGGGGTAAAATTATAAATCCACTATGTCAATTATTAATTTTTTAATAGATGTATCAATTTAAAAGTGTACAAGTAATTAAGAATCGAGAGAGTATATTATCTTTGTAATTAATTCCTTTTGAAAACATTTACATTCATTTGTATAAATCCACTGAAAGGTTTCAAGACGCGAAGTAGTAAAATAATCTACATATTTATGATTTCTTAATATTCATGGACAGATAAACTAATATGAAATACACACACATATATATATAATGTGATTCTTTTTTTATTAATTAAGTTTTCAAAAATATGTTTTTCTTACATTTAATGATAATAATTTAATTTTAAAAGACATTTTATTCATACTAAAATAATTTAAATAAGATAATGCTTATACTATTTCAATATTGTGATAATTCAGGTATAAAATTTATATTTTTAATATTTCAAATGCCAAATTCAAGAAACTAGGATAATTTTGGAATCGGCACTAGGTAAAACTTACTTGCATCGAATATATATGTCCAATTAATATATTCATATCATATATTTTAAATTTATAATTTATTTAATTTAATCATAATTAATTAATATATATTTACTTCACTAAATCACTTGAAAAGTGTAAATTACGTTAATTTGATGTATATAGCCGTCCACACTTACAACACCGAGGTATGCGTTACTCCGAGTCTCCGACCAAAAGAGTGAAAGCCCTAGTGTTTTGGACCGGGTCGTGTCTATTGGGCTGAATGTATTGCCATTTATGAGCCCAATAAAAATTGTCTTATTCATTCATCTCTTTTATTTTCTTTTGAACTTTTTAGTTACTTCCCTTTTTTCTTCTCATTTTTATTGAATTTACTCAATGTTATGATTTTACTTTGTTTCTTACACTTTCTTTTCCCTCCCAAATTTTTCTCCCTAAATGAAATTCTAACATTTTTTTTACAAAAAACCTTGAATGGTTTGCTGTATTTTTATGTACAAGTCACCTAATCCCTCCTATGTGAATAAACACACGCACACAATTTTCATTCATTACTAAAATTCATTGTTTTCTCTCATTTTTTTTTTATAAAGATTTAAATCTATACGCTATTGGAATAAATAAATCTGCATACTATCAAGTCATTCAAATCATATTTACAAATAAATTTTCTGTGGACTTAGAACGTGAATATGATATCTGTCTAAAAATAAAATATTGTGATCATATTAGAATAAATTAAAATAATTTAATTGTTTTACGCTAGAACTTAATTTTATAATCGGTAGGCTGTAGCCGACATCCCTAATGGACAG-CTGCACGCGAGGCTACAAGATAATATTATTCACCTTCATTTTTAATTATCATAATCCTATTATCTAAAGTTAAATATAATAATTTTAATTAGTATTTATAATATATTTATTTTATTATATTAATATATAAAAATTATAAATTATAACATTCTTTACATAATTTTTTAAATATTTAATTAAAAAATTAAATTAATATAATATAATTTAATTTTTAGAAAACTCAAAAAAGAAAGTAGGACAAAAGACTCCACGACATTGGAAACATAACAATCAATTGTGCAGCAGAAACCCATGCAGATTAGTTTAGTGCATATGTAAGCCCTTACATCATTAACTTAACATTAATTAATTTTTAAATTTAAATATATTACATTCACGTGATATACGTGAATATTTAAACAAACAATATAATTTGATATTTAACAAAATGTATATACGTACAAATTGTACAGAAAATACTATACATAGTACAATATTTTACATATTAATAGAAAATATATCGTAAAATATTAGTTAAATTTTTTGTATCATTTGATTCTAAAAAAGAAAACTATGATAACTAGAAGTGAATGAAAGAAGTATATAGAAAGATAATTTTACTATATTATATTTGAGTATAATAAATTCAGTATTATAAAAAGTCAAATTTGATGTTTTAATTTACAAGACACAACAAATATTTTACAATGATGTTTTTTTATCATATCAATATACAAAAATATTGCTATTAATGATATTTTCGTAGTGTTTTTGAATATCTAATTTCAAATTAACTTTCTAAAAATGCTATGTGGTGGGCGAATACTAACTACTTTGCGAGGAATATGTCAATGTCTATACTGGACGAAAAGAATACTTATATAAACACCTTTCTTGTTTCTTCATTTACTACTAAAAATCATTTAACAATACAGATATTTCAGTTCAGTTCTTACTAAAAATGGCTTGTGAGTCAAGATTAGAAGAGCTAAATTTTGTTTTGGTACCATTACTTGCTGTAAGTCACATCATACCCATGGTAGACATTGCCAAATTGTTAGCACAAAGAGGCGTGATTGTCACTTTAGTCATGACGCCTCTTAATGCTATGCGATTTACTGCAGCAATTGATCGCGCCATTGATTCTGGACTCCTCATTCGGGTACTTCATCTCCGTTTTCCAGCCAAGGAAGCGGGATTGCCTGAGGGATGTGAAAGTGTCGATCTTCTCCCCGGTCTAGCTTATCGAAGAAATTTTTTTACTGCAATTGATATGTTACAAGACCAAGCTGAAAAATTGCTTCAAGAGATTCAGCCTAAGCCGAGTTGCATTATTTCCGATATGCATATTGCTTGGACAGCTGAAACAGCTGATAAGTTTCAGATTCCGAGAATTATTTTTGATGGAATGAGTTGTTTCAATCAGTTGTGTATGCATAATTTGTATATCATGAAGGATCAAAACAGAATCCCTGAATCAGGGCATTTTGTGATCCCTGATTTGCCTGATACAATTGAAGTAACTAAAGTTCAGCTACCTGGAGCGTTTAATCCCCCGCCACTTCACGTGCAAGACTTTCGAGACAAAATACGAGCAGCTGAAATAAGTGCCTATGGGGTTATAATCAATACTTTTGCGGAGTTGGAAGAAAATTATGTTGATGAATTCAGAAAACTTAAAAATGGTAGAGCTTGGTGTGTAGGTCCTTTGTCTCTCTGTAACAATGAGAGTCTAGATAAAGCGCAGAGAGGGAATATGACGTCATTTGACGAAGAGGAACGTTTGAAGAAATGGCTTGATTCATGGCAGCCTGAGTCTGTTGTGTATGCGTGTTTGGGAAGCCTTAGTCAGACCACAGTTGTACAGTTTGCGGAGCTGGCTTTAGGCCTGGAAGCATCAGGTTATCCGTTTATTTTAGTCGTAAAATCAGGGGAAAGACAAGCACCAATAGAGGAATGGATATCGGAAAATGGATTTGAAGAAAGAATAAAAGAGAGAGGGCTTTTGATCCGGGGCTGGGCACCACAAGTAGTAATTCTATCACACCCTGCGATTGGTGGGTTCTTGACTCATTGTGGTTGGAATTCGTCCCTTGAAGGGATTAGTGCTGGTGTGCCTATGATCACTTGGCCTTTATTCGCGGAGCAGTTTTTAAACGAGAGATTTTTAGTACATGTCTTGAAGACGGGCGTGAGTGTTGGATCTCAGGAAGTTGTGCATTTCGGTGAGGAAGAGAAATATGAAGTCCAAGTGAGCAAAGAAGAAGTGACGAAAGCCATAAAAGAAGTGATGGACAAAGAGAAAAAAGCAAATAATAGGAGAATAAGAGCCAAAGAAGTTAGAGAAATGGCAAAAAAAGCTATAGAAGAAGGTGGATCTTCTCATCTCAGTTTGACACTACTAATCAAAGAAGTACAAGAATTCAACTAAACCAATTAGCTTAAAATGATTATGCACAAGCACGCAGTGTACTTTCTTTGATTTTTATGTTTTTGGTAGCGCAAGCGAAATCAGGGAAGGGATTAGAAAGTGAAGAATCAAACCCTCACAGGTGAAATTCAGACAACCAATCAACTGAACTACTAAGATTCCCCAATTATTTTTGTACACGAATACGACAAGACACAGTTATATATTAATTTTGCCAGTTTCAACTTTCAACAATGAGTTTTATATTAAGTATAATTAAGTGATTGGTGACTGTATTGCCACATAAAAGGAAGTGTTGTCTCATAATGTAGTTTGCCAAAATTCAACACGCATTACAACATATCCCAATTAAGTAAATCTTACTGGTGCTCGTTCAACTTTGTTAGCTGACTTATCTCATGAAATGTCGAGTTGCATATGGTCAGAATTTCTTGATAACTTATATAATTGCTCGAAGTGCCGTAATGGACTACTACACTTGAGGCTACAAGATTAACTTAGTGCAGATTAATTTAATGCAGATGTAAGCCCTTACATCATAACATTAAGAAGTACTAACACTACTAATATAATATAAAAGTACATTTTATCTTTCTTCATTTGCAACTGAATCATATTAAAGATGGTTACAGAAACAGAGTTAAACTTTGTTTTGATACCATTACTTGCTGCAAGTCACATCATACCCATGGTGGACATGGCAAAACTGTTAGCAGGGAGAGGCGTTACTGTCACTCTAGTCATGACGCCCCTCAATGCTATCCGATTCACTGCAGTAATTGATCGTGTCATTGGTTCTGGACTACTCATTCGGGTACTTGAACTCCAGTTTCCAGCCAAGGAAGTAGGACTGCCTGAGGGATGTGAAAGTGCGGATCTTCTGCCAGCTCTAGCCTTTCGAAGAAATTTCTTTGCTGCAATTGATATGCTACAAGACCAAGCTGAAAAATTGCTTGAACAGATGAAGCCTAAGCCAAGTTGTATTATTTGTGATACTCATATTGCTTGGACAGCTGAGACAGCTGATAAGTTTCAGATTCCAAGAATTATTTTTGATGGAATGAGTTGTTTCACTCAATTATGTATGCATAATTTGTACGTCATGAAGGATAAAAACGAAATTCCTGAATCAGGGCCTTTTGTCATCCCTGATCTGCCTGATAGAATTGAAGTAAGCAAAGGTCAGCTGCCTGGAGCATTCAATCCAGGAAAACATTGCATACAAGATATTCGAGACAAAATACGAGCAGCTGAAACAAGAGCCTATGGGGTTGTAATCAATACTTTCGAGGAGTTGGAAGAAAGGTACGTTGATGAATTCCGAAAACTTAGAAATGGAAGAGTTTGGTGTATTGGACCTTTGTCTCTATGTAACAATGACAATCTAGATAAAGCTCAGAGAGGGAATAAGACGTCAGTTGACAAGGAGGACAGTCTAAACAAATGGCTTGATTCTTGGCAGCCTGAGTCTGTTGTCTATGCATGTCTTGGGAGTCTCGGCCGTATTACAATTGTACAATTTGTTGAGCTAGCTTTAGGCCTGGAAGAATCAGGTTGTCCATTCATTTTAGTCATAAAAACAGGGGAAGGACAAGCACCAATAGAGGACTGGATATTGAAAAATAGATTTGAGAAAAGAACAAAAGAAAGAGGGCTTTTGATCCGTGGCTGGGCACCACAAGTATTGATCCTATCACATCCTGCGATTGGAGGGTTCTTAACTCATTGTGGTTGGAATTCGACCCTCGAGGGGATCACTGCTAATGTGCCTATGATCACTTGGCCTTTATTTTCCGAACAGTTTCTGAACGAGAGATTCTTAGTGCATGTCTTAAAAACAGGTGTGAGTGTTGGATGTCAAGGAGTTATGCATTTGGGAGAGGAAGAGAAACCTGAAGTCCAAGTGAACAAAGAAGAAGTGACTAAAGCCATTAAAAAAGTGATGAACAAAGAGAAAGAAGGAAACGATAGGAGAAAAAGAGCCAAAGAAGTTGGACAAATTGCAAAAAAGGCAATAGAAAATGATGGATCTTCTCATCTTAGTTTAATACTTCTAATCAAAGAAATACAAGAATTCCAACTCAACAAATCTTGAATTGAAAATGCACTAGTAGTATGGAATGTACTTCTTTGAGAATTATAGTGTGTTATACTGTTCAACAATTTGTTTGAGCCCACAAGTTACTTGTGTGGTCTTAAGAAAATTATAACCGCGGCCATACAAATTACAGAACTCCAACAAACTCAAATGGCATAGCAATGAATATAAGCACAAAAATTCTCCTCTTCATTACCATGACTCAATAATTGATATAGCAAGTCCCCTTCTAAAATGAAATGTACTGCCTGGCAATTATTGGATTTCTCTCACCTCTACACATGTTACACGAAATTCTGACTGTTAATGGGACTTGTCTTTCATTTTGCTCCTTTTTTCCTAACTTTAACATCATATAAATAACCAATTCTTTATCATGTCATGAGCGTCTAAATGACATAATAACTCTTCACAAATATGTGGTGAAGAGTTTTCTGAGGTGTAGAATTGGCACTTAAATATTAACTGCTGGAGTTTGATGGATATCAAAAGTACTCATTTTTTGAAAAACTTGAAGGAGCAAAACTACTCAACAAACTATAGCCTTTTCAGTTCTTATTGAGTAAAGATGACAACAGTGCCAGCATTAGCAGAGCTAAACTTTGTTGTGATACCTTTACTTTCTACAAGTCACCTCATACCCCTGGCGGACATGGCTAAATTGTTAGCGCAGCAAGGAGTGACAGTCACGTTAGTCACGATAGCTCTAAATGCCGCCAGATTCACTGCAGCGATTGATCGTGCCATTCATTCTGGACTCCTCATTCGGGTAGTGGAGCTCGAGTTTAACGGTAAGGAAGCAGGACTGCCAGAGGGGTGTGAAAACCATAACGATGTGCCTGGTCTGAACTATCGAAGACAGTTCTTTGCTGCAATTGATATGCTGCAAGAACAGGCTGAAAAATTACTTGAAGAGATGAAGCCTAAACCGAGTTGCATTATTTCTGATGCATATGTTGCTTGGACAGCTGATACAGCTGATAAGTTTCAGATTCCAAGAATTGTTTTTGATGGAATGAGTTGTTTTACCCAAATGTGTATGCATAATATGTACATTTTGAGGGATCAAAACAAAATTCCTGAATCAGGGACTTTTGTCATACCTGATTTGCCAGATAGAATTGAAGTCACAAAAGCTCAGCTGCCTCCACATTTCAATCCTGCAGGAGCAGTTTTCATACAAGATATTCATGACAAAATAAGAGTGTTAGGATCGAAAATAAGCAGGTGTAAACGCGGAAGCTAGCAAAATAAACCTTGAAAGATCATGAGTAAGAAGACAAACGAGAAATATATTAAAAGACACAATTTAACGTGGTTCGGTCAATCAATCTACGTTCACAAAGGAAATTAGCAATTCACTATAAATAGGAGAGTACAAATACAGAGGTAAACAACCTCAACCAAATTCACTCAGAATACATGGGAGGTTCATACAAGTGATAACGTATCAATCTTGTGACCCACAATTTCTCCTCCTAACCAAAACTCTCAAAGGCATTAAGAGTATAATGTGAATGCTGATTAAGTTAGAAAGAACATTCATCTTAAACCTTTTTCTACAAAAAAGAATTAGTGAATCCAAAACCTTTTACTAAAAGGAAAACCTATTTATGGTAAGAAATCAGAACAAATAAAACCCAACACAGCTAAAAAAGAGCATATGGGGTTGTGATCAATACTTTCGAGGAGTTGGAACAAAGGTATGTAGACAAATTCTGAAAACTTAAAAATGGTAGAGTTTGGTGCATTGGAACTTTATCTCTTTATAACCATGACAATCTTGATAAATTTCAGAGAGGGAATAAGGCTTCGTTTGACCAAGAGGACAGTTTGAAGAAATGGCTTGATTCTTGGGAGCCTGAGACTTTTGTGTATGCCTGTTTTGGCAGCCTCGGTCGTTGTGCAGAAATACAATTTGTGGAGCTTGCTTTAGGCCTAGAAGCATCAGGTTATCCATTCATTTTAGTCATAAAAACAGGGAAAGGACAAGCACCAATTGAGGAGTGGATTTGAGGAAAGAACAAAAGAAAGAGGGCTTTTCATACGCGGGATGGTCACCACAAGTACTAATTCTATCACACCCTGACTCATTGTGGTTGGAATTCAACTGTCGAAGGGATTAGTGTTGGTGTACCTTTAATCACATGGCCTTTATTCGCGGAGCAGTTTCTTAATGAGAAGTTATTAGTACAAGCATTGAAGATTGCTGCGGGTGTTGAATCTTGATCCAAGGAATACTTGATCCTTTGTTTGTTTAGTAGTTCAAAGTATGTATGTTTGTAATTACCCAGAAATTTCAATTTCAACTTTTATTCACACAAGACTTCAAACTACAAAAGACAACAACAGTAAAGATAGTCAGAACGCCCTTCGTTGAAAAATTATATCGAATATATAGGCAAAATATAATCTAATATCTAGATATATTATAAATTGAACACTCTTCACATAACAAAGACAAACAATCTAGTGGTAAAGACAGAAATTTTAATTATTTAATTATTGTGCACCTACTCTATCGGTTATGTTCTCCCAGATTTTCAAGTTGCACCAACTCAAAATTCACATCACTGCCTATCTAGATCCCGGAAAGAATCAAAAGGATAATATTGACAAATTACGCTTTAATTAATTAATGTCTTTAAATATCTTTATTAAAAGGTGTGTCATGTCCCAACAATCCATTTATCTAGGACTAATTAGAGTCGTTAATTTGAACTACGTCGATCGATTGAGTAGAGTTGAACTAAGATTTTTGAAGCCTATTTAAAAGGGAAAAGGGTTGTATTTGCCCTTATACTCTTAGAAAAGGATCATACTTGCCTTTCGTCATACTTTTTTGATATATTTACCTTTGTCATCAAACTTTAAAGCCATATTAATCCTCCTTCCATTAAATCTCCATATTTTACTTAATATCTTTTATGTTGTGCCTATGTGGGTTTTATTTTTATCTAATTAAATCAAAATATTATTATATTCATTTAAACCCACCCTCATTAAATTAAACCCCATCCACCAATGAACCCAGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGCTTTGATTTTTTTTAAAAAACAAAATTTGTGCATATATCAAAGATTTTTTATATATAGTTCTTGATTTGAAGAATAATGGATGAAATTGCTATAAATGATTTTTTTGGTGTATCAATAAATGCAGTGATAGGAATGATTTCAAGATGGTGAAGAACTTTGGTGGTGTCATAGATTTGATTTATGTTGTTGTGAAGAAGAAAGAAAATTAATAAGAAATTAATAACTAAAAATACACATTTATTATTTGTGTTGGTTTTCACTCTCTCTAAGAGAGTGAGATACACTCACTGTGCCACGTAAGCATCTAGGGAGTAAATTATTTCAGTTTTAAACAATTCAGGAGGGTGATAGGATATTCGTTAAGTTGGAGTATGTAGTTGAATTTCAGATATAGACCGAAGAGCTTTAGACCATTTTCTCTATGGTCGCATATCTTTTTACACACAAAACAAAATTGATTCACTTCCAAGATTCTATATTTTCTCTTCTTAATATTTGTTTCAATGGCGAATGCATCCTTAAAGTTACCAAAGAAAGGCATTGCTTCTTATTTAGGCTATCCAAGATCCAAGAAATGCTAAACCCAAATGTGACATTTTGCGGCTAATGAATTTTGCAAATTAAAAGCAACTTCACACTTTGGATTTTGTATCCAATATGTTCAAATTCCTTCTTCTTTTTTTTTTTTGGTTAAATAATTCGATATACAAATATGTTAACGATGAATCATTTTTTTCCTATTCTATTTCCTACAAGGACAGGACATTAGAAAAAGGCGATAAATAATATGCTTATGAACATAATTTCCAGTAAAACGATTTCATTTTCATTGCTTTTGTGCTCGTTCTTTTCTTACACTTTTGCTTACAATTTCATTATTCGTAATAACTGTCCTTTTACCATATGGCCTGGTACACTGGCTGGTGCGGGAACTCCTCCACTTCCCGCGACTGGCTTTCGATTAGATGCAGGGCAAAGCATCACAATTCCAAGTGTAGCTGGTTGGTCAGGGAGAATATGGGCTAGAACTGGCTGCACTTTTGATGCATCAGGTATTGGCTCGTGTCAAACAGGCGATTGTGGTGGGAAGCTTGAATGTAGTGGGCTTGGTGCCACGCCACCTGCCTCCCTCTTCGAGATAACTCTTGGCGTGGGAGACAACAAAGATTTCTATGATGTTAGTATTGTTGATGGCTATAATTTACCAATGGTTGCTCTACCTCAAGGCGTCAACGGGGGATGCAATGCCACTGGCTGCCTCTCAAATCTTAACATGGGTATTTTCTCATCACTCTGTTATATCAGCTCTAAATCGCAAAGTTAAGGGATATATCAATAGATTGAGTTACTTTTTTTAGAAGAATAATTTCGTTTTTTTTTAACAAAATGGAACAGGTTGTCCAAAAGAACTTCAAGTGATGGGTGAATATGGAGGAGAAGGGAATGTGGTGGCTTGCAAGAGTGCATGTGAGGCTTTTGGTTTAGACCAATATTGCTGTGCAGGACAGTTTGCAAATCCAACAACTTGTCAACCATCTTTTTACTCAACTATATTTAAGAATGCTTGTCCAAGGGCTTATAGCTATGCATTTGATGATGGCACTAGCACTTTTACATGCAAAGCTAATGACTATGCAATCATATTTTGCCCAATGAATGGGTACTCTCTCAAAACTTTCATCATCTTAAATGTTCCGTCCATTCCAATTTACGTGTAACTCTTTTCGTTTTAGTCTGTCAAAAAAAAATAATGTAATCTATTTTTAAACTTCATGTTCAGTCAAATATCGTCTTGAA-TTTTGAAACAGGGTAAAGAGGCCTAATGAAGAAGGATCAACAACTCAAGCAACTCAGCCTATTGAAGAGAGTAAAACTGGAAAGTTTGCAGAAACAATGGCGTCAACTTCAAACATTATACTCCTTCCTTTTCCAATGTTGATTCATATGTTGCTAATTTTCAGCTTACATCTCTTAGCATCTATATATTATTCACTTATTAAGATAAAAAAAAAATGTTACTTTTCAAATACAATAAAATGACTATGTCATTCACTTTTTTTTTTTTGAATCTTGAAAAACATTTCCCTCAATGAGTACACCACAAAAGATTAATCTCAAATTGCATGAATCTAAACCTTAAGTGGGCCATAAATAAGTATGATTTGGTATAAAGACAGCTAATTTTTTATTTTTTTTAAAAAAAGAGAAAAGTATTGAAAACATGATTTCTGAGTTTGACACAAATTATAGTTTCGTTTTTGAAATGTTGACAGCTTTAAAAATAATCTCTACTCGACTAACTAAACTTAGATACACCCACGATCTGTCACATGAAATAACAAGCAGTGTCAAACTCTAAACTCGCTTTTAATTAATTAATCTCAAATTGCATGAATCTAAACCTTAATTAAACCATAAATAAGTATTATTCGGTATAAAGACAATTCTTTTTTAAGAAACAAGAGAGAATTGTTGAAAACAGGACGTCCGAACTTGCCACAAATTATTTATTCCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGCCTAATGCCTTTGTCATCAATCTTGGTGATCAATTGGAGGTAAACACGTCTTTCTCTGTTTCTGTTTCAATTTATGTGATATCAGACTTGCACATCGTCTGAAAATACAACTAATTAGATAAAAGAGTATAAACTTTTAGATGAAATAATTATTTATCGTGTGTGCAGGCGTTGAGTAATGGGAAGTATAAAAGTATATGGCATAGAGCTATTGTAAATTCAGACAAAGCAAGGATGTCTGTGGCTTCTTTTCTCTGTCCCAATGATTGTTCCATTATCAGTGCTCCAAAAACCTTAACTGAAGATGGATCTTCTGCAATTTATCGAGATTTCACTTATGCTGAATATTATGAAAAATTCTGGAGCAGGAATTTAGATCAGGAATATTGTTTAGAACTTTTTAAGAACGATGGAACCTAGTACTTGTATGAGTTTATTACTTTT</genome_strand>
        <mrna_strand>GATGAAATTGTATTCTGATGATCCATCTAAGACTATGAGATTATCAACTAGTTTTAATGTTAAGAAGGAAACTGTTCATAATTGGAGAGATTATCTTAGGCTACATTGTTATCCTTTGGACAAATATGCCCCTGAATGGCCTTCTAATCCTCCTTCTTTCAGGGAAATAGTAAGCAAATATTGCATGGAAGTTAGAGAGCTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAT-AG--ATTGGAAGAAGCAATATCAGAGAGCTTAGGGCTT................................................................................................................................................................................GAGAAGGATTG-TATAAAAAATGTGT-TAGGTGA--ACAAGGACAA-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGGCTATCAATTTTTATCCTCAGTGTCCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTGAATT-AAC-TT-ATGGGTTACCAGCCCATACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCAAATGCAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAT-TCTTCTTCAAGATTTGCAAGTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCCTTCAAGTTCTTAAGGATGGAAAATGGTTATCTATTAAACCTCAGCCTAATGCCTTTGTCATCAATCTTGGTGATCAATTGGAG.................................................................................................................................GCGTTGAGTAATGGGAAGTATAAAAGTATATGGCATAGAGCTATTGTAAATTCAGACAAAGCAAGGATGTCTGTGGCTTCTTTTCTCTGTCCCAATGATTGTTCCATTATCAGTGCTCCCAAAACCTTAACTGAAGATGGATCTTCTGCAATTTATCGAGATTTCACTTATGCTGAATATTATGAAAAATTCTGGAGCANGAATTTAGATCANGAATATTGTTTAGAACTTTTTAAGAACGATGGAACCTAGTACTTGTATGAGTTTATTACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349240" ref_strand="+" ref_description="SGN-E349240 [cTOS-2-H3]">
      <seq>aaatatgaagtccaagtgagcaaagaagaagtgacgaaagccataaaagaagtgatggacaaagagaaaaaagcaaataataggagaataagagccaaagaagttagagaaatggcaaaaaaagctatagaagaaggtggatcttctcatctcagtttgacactactaatcaaagaagtacaagaattcaactaaaccaattagcttaaaatgattatgcacaagcacgcagtgtactttctttgatttttatgtttttggtagcgcaagcgaaatcagggaagggattagaaagtgaaaaatcaaacccctcacaggtgaaattcagacaaccaatcaactgaactactaagatttcccaattatttttgtacacgaatacgancagacacagttatatattaattttgccagtttcaacttttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95169" stop="96197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95469" g_stop="95901" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E349240" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95469" e_stop="95901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGAAGTCCAAGTGAGCAAAGAAGAAGTGACGAAAGCCATAAAAGAAGTGATGGACAAAGAGAAAAAAGCAAATAATAGGAGAATAAGAGCCAAAGAAGTTAGAGAAATGGCAAAAAAAGCTATAGAAGAAGGTGGATCTTCTCATCTCAGTTTGACACTACTAATCAAAGAAGTACAAGAATTCAACTAAACCAATTAGCTTAAAATGATTATGCACAAGCACGCAGTGTACTTTCTTTGATTTTTATGTTTTTGGTAGCGCAAGCGAAATCAGGGAAGGGATTAGAAAGTGAAGAATCAAA-CCCTCACAGGTGAAATTCAGACAACCAATCAACTGAACTACTAAGATTCCCCAATTATTTTTGTACACGAATACGACAAGACACAGTTATATATTAATTTTGCCAGTTTCAAC-TTTCAACAATGAG</genome_strand>
        <mrna_strand>AAATATGAAGTCCAAGTGAGCAAAGAAGAAGTGACGAAAGCCATAAAAGAAGTGATGGACAAAGAGAAAAAAGCAAATAATAGGAGAATAAGAGCCAAAGAAGTTAGAGAAATGGCAAAAAAAGCTATAGAAGAAGGTGGATCTTCTCATCTCAGTTTGACACTACTAATCAAAGAAGTACAAGAATTCAACTAAACCAATTAGCTTAAAATGATTATGCACAAGCACGCAGTGTACTTTCTTTGATTTTTATGTTTTTGGTAGCGCAAGCGAAATCAGGGAAGGGATTAGAAAGTGAAAAATCAAACCCCTCACAGGTGAAATTCAGACAACCAATCAACTGAACTACTAAGATTTCCCAATTATTTTTGTACACGAATACGANCAGACACAGTTATATATTAATTTTGCCAGTTTCAACTTTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545312" ref_strand="+" ref_description="SGN-E545312 [TUS-68-B13]">
      <seq>aagaagtacaagaattcaactaaaccaattagcttaaaatgattatgcacaagcacgcagtgtactttctttgatttttatgtttttggtagcgcaagcgaaatcagggaagggattagaaagtgaagaatcaaaccctcacaggtgaaattcagacaaccaatcaactgaactactaagattccccaattatttttgtacacgaatacgacaagacacagttatatattaattttgccagtttcaactttcaacaatgagttttatattaagtataattaagtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95341" stop="96226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95641" g_stop="95925" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="286" polyA_stop="295"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E545312" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95641" e_stop="95925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGTACAAGAATTCAACTAAACCAATTAGCTTAAAATGATTATGCACAAGCACGCAGTGTACTTTCTTTGATTTTTATGTTTTTGGTAGCGCAAGCGAAATCAGGGAAGGGATTAGAAAGTGAAGAATCAAACCCTCACAGGTGAAATTCAGACAACCAATCAACTGAACTACTAAGATTCCCCAATTATTTTTGTACACGAATACGACAAGACACAGTTATATATTAATTTTGCCAGTTTCAACTTTCAACAATGAGTTTTATATTAAGTATAATTAAGTG</genome_strand>
        <mrna_strand>AAGAAGTACAAGAATTCAACTAAACCAATTAGCTTAAAATGATTATGCACAAGCACGCAGTGTACTTTCTTTGATTTTTATGTTTTTGGTAGCGCAAGCGAAATCAGGGAAGGGATTAGAAAGTGAAGAATCAAACCCTCACAGGTGAAATTCAGACAACCAATCAACTGAACTACTAAGATTCCCCAATTATTTTTGTACACGAATACGACAAGACACAGTTATATATTAATTTTGCCAGTTTCAACTTTCAACAATGAGTTTTATATTAAGTATAATTAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545311" ref_strand="+" ref_description="SGN-E545311 [TUS-68-B13](-)">
      <seq>aagaagtacaagaattcaactaaaccaattagcttaaaatgattatgcacaagcacgcagtgtactttctttgatttttatgtttttggtagcgcaagcgaaatcagggaagggattagaaagtgaagaatcaaaccctcacaggtgaaattcagacaaccaatcaactgaactactaagattccccaattatttttgtacacgaatacgacaagacacagttatatattaattttgccagtttcaactttcaacaatgagttttatattaagtataattaaggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95341" stop="96226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95641" g_stop="95922" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="285" polyA_stop="294"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E545311" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95641" e_stop="95922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGTACAAGAATTCAACTAAACCAATTAGCTTAAAATGATTATGCACAAGCACGCAGTGTACTTTCTTTGATTTTTATGTTTTTGGTAGCGCAAGCGAAATCAGGGAAGGGATTAGAAAGTGAAGAATCAAACCCTCACAGGTGAAATTCAGACAACCAATCAACTGAACTACTAAGATTCCCCAATTATTTTTGTACACGAATACGACAAGACACAGTTATATATTAATTTTGCCAGTTTCAACTTTCAACAATGAGTTTTATATTAAGTATAATTAA</genome_strand>
        <mrna_strand>AAGAAGTACAAGAATTCAACTAAACCAATTAGCTTAAAATGATTATGCACAAGCACGCAGTGTACTTTCTTTGATTTTTATGTTTTTGGTAGCGCAAGCGAAATCAGGGAAGGGATTAGAAAGTGAAGAATCAAACCCTCACAGGTGAAATTCAGACAACCAATCAACTGAACTACTAAGATTCCCCAATTATTTTTGTACACGAATACGACAAGACACAGTTATATATTAATTTTGCCAGTTTCAACTTTCAACAATGAGTTTTATATTAAGTATAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311813" ref_strand="+" ref_description="SGN-E311813 [cLEZ-9-N23]">
      <seq>agaagtacaagaattcaactaaaccaattagcttaaaatgattatgcacaagcacgcagtgtactttctttgatttttatgtttttggtagcgcaagcgaaatcagggaagggattagaaagtgaagaatcaaaccctcacaggtgaaattcagacaaccaatcaactgaactactaagattccccaattatttttgtacacgaatacgacaagacacagttatatattaattttgccagtttcaactttcaacaatgagttttatattaagtataattaagtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95342" stop="96226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95642" g_stop="95925" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="285" polyA_stop="294"/>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E311813" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95642" e_stop="95925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTACAAGAATTCAACTAAACCAATTAGCTTAAAATGATTATGCACAAGCACGCAGTGTACTTTCTTTGATTTTTATGTTTTTGGTAGCGCAAGCGAAATCAGGGAAGGGATTAGAAAGTGAAGAATCAAACCCTCACAGGTGAAATTCAGACAACCAATCAACTGAACTACTAAGATTCCCCAATTATTTTTGTACACGAATACGACAAGACACAGTTATATATTAATTTTGCCAGTTTCAACTTTCAACAATGAGTTTTATATTAAGTATAATTAAGTG</genome_strand>
        <mrna_strand>AGAAGTACAAGAATTCAACTAAACCAATTAGCTTAAAATGATTATGCACAAGCACGCAGTGTACTTTCTTTGATTTTTATGTTTTTGGTAGCGCAAGCGAAATCAGGGAAGGGATTAGAAAGTGAAGAATCAAACCCTCACAGGTGAAATTCAGACAACCAATCAACTGAACTACTAAGATTCCCCAATTATTTTTGTACACGAATACGACAAGACACAGTTATATATTAATTTTGCCAGTTTCAACTTTCAACAATGAGTTTTATATTAAGTATAATTAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284597" ref_strand="+" ref_description="SGN-E284597 [cLES-3-C2]">
      <seq>aaaaaggcgataaataatatgcttatgaacataatttccagtaaaacgatttcattttcattgcttttgtgctcgttcttttcttacacttttgcttacaatttcattattcgtaataactgtccttttaccatatggcctggtacactggctggtgcgggaactcctccacttcccgcgactggctttcgattagatgcagggcaaagcatcacaattccaagtgtagctggttggtcagggagaatatgggctagaactggctgcacttttgatgcatcaggtattggctcgtgtcaaacaggcgattgtggtgggaagcttgaatgtagtgggcttggtgccacgccacctgcctccctcttcgagataactcttggcgtgggagacaacaaacatttctatgatgttagtattgttgatggctataatttaccaatggttgctctacctcaaggcgtcaacggtggatgcaatgccactggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="101373" stop="102459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101673" g_stop="102159" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E284597" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101673" e_stop="102159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGCGATAAATAATATGCTTATGAACATAATTTCCAGTAAAACGATTTCATTTTCATTGCTTTTGTGCTCGTTCTTTTCTTACACTTTTGCTTACAATTTCATTATTCGTAATAACTGTCCTTTTACCATATGGCCTGGTACACTGGCTGGTGCGGGAACTCCTCCACTTCCCGCGACTGGCTTTCGATTAGATGCAGGGCAAAGCATCACAATTCCAAGTGTAGCTGGTTGGTCAGGGAGAATATGGGCTAGAACTGGCTGCACTTTTGATGCATCAGGTATTGGCTCGTGTCAAACAGGCGATTGTGGTGGGAAGCTTGAATGTAGTGGGCTTGGTGCCACGCCACCTGCCTCCCTCTTCGAGATAACTCTTGGCGTGGGAGACAACAAAGATTTCTATGATGTTAGTATTGTTGATGGCTATAATTTACCAATGGTTGCTCTACCTCAAGGCGTCAACGGGGGATGCAATGCCACTGGCT</genome_strand>
        <mrna_strand>AAAAAGGCGATAAATAATATGCTTATGAACATAATTTCCAGTAAAACGATTTCATTTTCATTGCTTTTGTGCTCGTTCTTTTCTTACACTTTTGCTTACAATTTCATTATTCGTAATAACTGTCCTTTTACCATATGGCCTGGTACACTGGCTGGTGCGGGAACTCCTCCACTTCCCGCGACTGGCTTTCGATTAGATGCAGGGCAAAGCATCACAATTCCAAGTGTAGCTGGTTGGTCAGGGAGAATATGGGCTAGAACTGGCTGCACTTTTGATGCATCAGGTATTGGCTCGTGTCAAACAGGCGATTGTGGTGGGAAGCTTGAATGTAGTGGGCTTGGTGCCACGCCACCTGCCTCCCTCTTCGAGATAACTCTTGGCGTGGGAGACAACAAACATTTCTATGATGTTAGTATTGTTGATGGCTATAATTTACCAATGGTTGCTCTACCTCAAGGCGTCAACGGTGGATGCAATGCCACTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547448" ref_strand="+" ref_description="SGN-E547448 [TUS-71-F9]">
      <seq>cccaccccaacccctatccccatacaccagtggttatcttcttccccatcattctaatgatttcaaaattcttagtatcagtggttatcttcttcccccaccattctaatggtttcaaaattcttagcattttgtttcatttataaatttttcgaagagattcttttccccatctttctctacctaaaaaacgagatgaagtaaaaagttataattaataaaagctgatgaaaaaaaaatttgtagggttaaagatagaactgtacagggagggggggtcgccattaatggagttaaagaaaatgtatgttttgttccagttgaaggcagggaggtgtttaggttttactttttttttaaattttttttactttaaaataatttttattttttttactttataatataatgtttaaataattttttggattaaaaaataacacatgtcattatttgattggtcaaattgacatgtcagcgcgagtgtatttcacacattctctattttttgtttattctcgaaaaaatgttcaaatgattcaaattcagaatggttgaagtgttcaataggtagtacgtctagttgaggtgtctaaatgaataatcgggacaagtttgagtgggcgcatatgactttgggctattttattctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105751" stop="107011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106051" g_stop="106711" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E547448" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106051" e_stop="106711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACCCCAACCCCCATACCCATACACCAGTGGTTATCTTCTTCCCCCATCATTCTAATGATTTCAAAATTCTTAGTATCAGTGGTTATCTTCTTCCCCCACCATTCTAATGGTTTCAAAATTCTTAGTGTTTTGTTTCATTTAT-AATTTTTCGAATAGATTCTTTTCCCCATTTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAATAAAAAAGCTGATG-AAAAAAAA-TTGTCGGATTAAAGATGGAACTGTACAGGGAAGGGGGGGGCGCCATTAATGGAGTTAGAGGAAATGTAAGTTTTGTTCCAGTTGAAGGCAGGAAAGTGGGTGTTTAGGTTTTACTTTTTTTTTTCATTTGTTTTACTTTAAAATAATTTTTATTTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGGTTCAAATTCAAAATGGTTGAAGTGTTCAATAGATAGTACGTCTAGTTAAGGTGTCTAAATGAATAATTGGGACAAATTTAAGTGACCGCATATGATTTTGGCCTACTATTTTTATAC</genome_strand>
        <mrna_strand>CCCACCCCAACCCCTATCCCCATACACCAGTGGTTATCTTCTT-CCCCATCATTCTAATGATTTCAAAATTCTTAGTATCAGTGGTTATCTTCTTCCCCCACCATTCTAATGGTTTCAAAATTCTTAGCATTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAAT--AAAAGCTGATGAAAAAAAAATTTGTAGGGTTAAAGATAGAACTGTACAGGG-AGGGGGGGTCGCCATTAATGGAGTTAAAGAAAATGTATGTTTTGTTCCAGTTGAAGGCAGG---G-AGGTGTTTAGGTTTTACTTTTTTTTTAAATTTTTTTTACTTTAAAATAATTTTTA-TTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGATTCAAATTCAGAATGGTTGAAGTGTTCAATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGGCGCATATGACTTTGGGCTA-TTTTATTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361117" ref_strand="+" ref_description="SGN-E361117 [cLPP-13-B5]">
      <seq>ccaccccaacccctatccccatacaccagtggttatcttcttccccatcattctaatgatttcaaaattcttagtatcagtggttatcttcttcccccaccattctaatggtttcaaaattcttagcattttgtttcatttataaatttttcgaagagattcttttccccatctttctctacctaaaaaacgagatgaagtaaaaagttataattaataaaagctgatgaaaaaaaaatttgtagggttaaagatagaactgtacagggagggggggtcgccattaatggagttaaagaaaatgtatgttttgttccagttgaaggcagggaggtgtttaggttttactttttttttaaattttttttactttaaaataatttttattttttttactttataatataatgtttaaataattttttggattaaaaaataacacatgtcattatttgattggtcaaattgacatgtcagcgcgagtgtatttcacacattctctattttttgtttattctcgaaaaaatgttcaaatgattcaaattcagaatggttgaagtgttcaataagtagtacgtctagttgaggtgtctaaatgaataatcgggacaagtttgagtggccgcatatgactttggcctattttattctaccgttggttacgaatatttattagtatatataggaatccaccattaanggaatatatatatatatatatatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0304I22-GdM3u/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0304I22.1" temp_strand="+" temp_description="C06HBa0304I22.1  AC211073.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0304I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105753" stop="107011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106052" g_stop="106711" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0304I22.1" gen_strand="+" ref_id="SGN-E361117" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0304I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106052" e_stop="106711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCCAACCCCCATACCCATACACCAGTGGTTATCTTCTTCCCCCATCATTCTAATGATTTCAAAATTCTTAGTATCAGTGGTTATCTTCTTCCCCCACCATTCTAATGGTTTCAAAATTCTTAGTGTTTTGTTTCATTTAT-AATTTTTCGAATAGATTCTTTTCCCCATTTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAATAAAAAAGCTGATG-AAAAAAAA-TTGTCGGATTAAAGATGGAACTGTACAGGGAAGGGGGGGGCGCCATTAATGGAGTTAGAGGAAATGTAAGTTTTGTTCCAGTTGAAGGCAGGAAAGTGGGTGTTTAGGTTTTACTTTTTTTTTTCATTTGTTTTACTTTAAAATAATTTTTATTTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGGTTCAAATTCAAAATGGTTGAAGTGTTCAATAGATAGTACGTCTAGTTAAGGTGTCTAAATGAATAATTGGGACAAATTTAAGTGACCGCATATGATTTTGGCCTACTATTTTTATAC</genome_strand>
        <mrna_strand>CCACCCCAACCCCTATCCCCATACACCAGTGGTTATCTTCTT-CCCCATCATTCTAATGATTTCAAAATTCTTAGTATCAGTGGTTATCTTCTTCCCCCACCATTCTAATGGTTTCAAAATTCTTAGCATTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAAT--AAAAGCTGATGAAAAAAAAATTTGTAGGGTTAAAGATAGAACTGTACAGGG-AGGGGGGGTCGCCATTAATGGAGTTAAAGAAAATGTATGTTTTGTTCCAGTTGAAGGCAGG---G-AGGTGTTTAGGTTTTACTTTTTTTTTAAATTTTTTTTACTTTAAAATAATTTTTA-TTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGATTCAAATTCAGAATGGTTGAAGTGTTCAATAAGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGCCGCATATGACTTTGGCCTA-TTTTATTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>159</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="8192" PGL_stop="8359"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8192" e_stop="8359"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="8192" e_stop="8359" e_length="168"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8192" stop="8359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241461" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAGTAAAATAAGATTCGATGACTCTGATGAACATGAATCTTCATCTGAAGATGAGGAGGAGAAGGGGATTGAGGAGGAGCTTGCTGATGTGACCTTTGAAGAATTGCAGAGAGCACGGTCTGATGGATCAGCTACAGTGTATAGGAAGCTTAATTCGGAAGGAAAA</gDNA_template>
            <first_frame> S  S  K  I  R  F  D  D  S  D  E  H  E  S  S  S  E  D  E  E  E  K  G  I  E  E  E  L  A  D  V  T  F  E  E  L  Q  R  A  R  S  D  G  S  A  T  V  Y  R  K  L  N  S  E  G  K </first_frame>
            <second_frame>  Q  V  K  *  D  S  M  T  L  M  N  M  N  L  H  L  K  M  R  R  R  R  G  L  R  R  S  L  L  M  *  P  L  K  N  C  R  E  H  G  L  M  D  Q  L  Q  C  I  G  S  L  I  R  K  E   </second_frame>
            <third_frame>   K  *  N  K  I  R  *  L  *  *  T  *  I  F  I  *  R  *  G  G  E  G  D  *  G  G  A  C  *  C  D  L  *  R  I  A  E  S  T  V  *  W  I  S  Y  S  V  *  E  A  *  F  G  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0304I22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="12151" PGL_stop="10931"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12151" e_stop="11956"/>
            <exon e_start="11570" e_stop="10931"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.848" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12151" e_stop="11956" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.848" acc_prob="1.000">
            <gDNA_intron_boundary i_start="11955" i_stop="11571" i_length="385"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11570" e_stop="10931" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12151" stop="11956"/>
              <exon start="11570" stop="11092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12149" stop="11956"/>
              <exon start="11570" stop="10979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12148" stop="11956"/>
              <exon start="11570" stop="10974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12148" stop="11956"/>
              <exon start="11570" stop="10978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12148" stop="11956"/>
              <exon start="11570" stop="11210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12148" stop="11956"/>
              <exon start="11570" stop="11301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12148" stop="11956"/>
              <exon start="11570" stop="11305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12148" stop="11956"/>
              <exon start="11570" stop="11314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12147" stop="11956"/>
              <exon start="11570" stop="11084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12147" stop="11956"/>
              <exon start="11570" stop="11127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12147" stop="11956"/>
              <exon start="11570" stop="11144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12143" stop="11956"/>
              <exon start="11570" stop="10949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12143" stop="11956"/>
              <exon start="11570" stop="10956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12143" stop="11956"/>
              <exon start="11570" stop="10962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12143" stop="11956"/>
              <exon start="11570" stop="10969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12143" stop="11956"/>
              <exon start="11570" stop="10969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12143" stop="11956"/>
              <exon start="11570" stop="10969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12143" stop="11956"/>
              <exon start="11570" stop="10981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12143" stop="11956"/>
              <exon start="11570" stop="10981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12143" stop="11956"/>
              <exon start="11570" stop="10985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12143" stop="11956"/>
              <exon start="11570" stop="10996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12143" stop="11956"/>
              <exon start="11570" stop="10999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12143" stop="11956"/>
              <exon start="11570" stop="11047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12143" stop="11956"/>
              <exon start="11570" stop="11058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12143" stop="11956"/>
              <exon start="11570" stop="11084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12141" stop="11956"/>
              <exon start="11570" stop="11229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12139" stop="11956"/>
              <exon start="11570" stop="10965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12137" stop="11956"/>
              <exon start="11570" stop="11284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12133" stop="11956"/>
              <exon start="11570" stop="10981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12131" stop="11956"/>
              <exon start="11570" stop="10967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12131" stop="11956"/>
              <exon start="11570" stop="10994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12131" stop="11956"/>
              <exon start="11570" stop="11106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12131" stop="11956"/>
              <exon start="11570" stop="11131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12131" stop="11956"/>
              <exon start="11570" stop="11188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12131" stop="11956"/>
              <exon start="11570" stop="11194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12127" stop="11956"/>
              <exon start="11570" stop="11356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12120" stop="11956"/>
              <exon start="11570" stop="10992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12119" stop="11956"/>
              <exon start="11570" stop="11054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12119" stop="11956"/>
              <exon start="11570" stop="11131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12111" stop="11956"/>
              <exon start="11570" stop="10966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12106" stop="11956"/>
              <exon start="11570" stop="11015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12106" stop="11956"/>
              <exon start="11570" stop="11018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12098" stop="11956"/>
              <exon start="11570" stop="10974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12094" stop="11956"/>
              <exon start="11570" stop="11128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12094" stop="11956"/>
              <exon start="11570" stop="11143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12075" stop="11956"/>
              <exon start="11570" stop="11172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11985" stop="11956"/>
              <exon start="11570" stop="11349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11303" stop="10931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11224" stop="10942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392631" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATATTACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG : GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGATGTGGCAATGCCTCTAAGGGCTGAATTTTTTATTT</gDNA_template>
            <first_frame> H  I  T  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  A  W  G  N  D  L  *  T  R  *  L  I  Q  L  L  E  I  L  P  T  H  H  L  L  R  S  L  A   : G  M  W  C  T  R  Q  C  M  T  R  I  *  R  N  M  C  H  R  G  Y  L  M  K  *  S  R  *  N  R  T  N  T  S  T  G  L  L  I  P  K  Q  G  C  L  G  Q  L  L  I  T  L  *  N  M  V  L  N  S  P  R  *  I  L  C  W  N  K  R  H  F  F  V  I  S  R  I  W  R  S  L  V  I  L  K  F  Q  K  T  S  Q  Q  K  I  L  L  A  G  K  V  K  E  V  F  R  L  L  C  S  M  N  M  *  Y  V  *  L  I  N  G  S  I  I  W  S  M  Y  R  I  K  L  A  T  L  C  G  L  L  L  N  G  H  M  V  Q  Y  I  R  S  N  F  S  V  I  S  F  V  C  P  N  *  K  K  K  L  V  L  Y  R  E  Y  V  I  E  H  K  I  K  S  W  F  Q  E  A  I  L  L  Q  *  N  L  Y  I  *  *  I  *  I  K  N  C  *  C  G  N  A  S  K  G  *  I  F  Y   </first_frame>
            <second_frame>  I  L  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  K  L  G  E  T  I  C  E  P  D  N  L  F  N  F  S  K  F  C  Q  L  I  I  Y  C  A  L  W  Q  :  E  C  G  A  H  V  S  V  *  Q  E  Y  R  G  I  C  V  I  V  G  T  *  *  N  N  R  G  R  I  G  Q  I  Q  V  L  D  S  S  S  P  N  R  G  V  W  A  S  Y  *  S  H  Y  K  I  W  F  S  I  L  H  G  R  F  C  V  G  T  K  D  I  F  S  *  F  R  G  S  G  E  A  *  L  S  L  S  F  R  K  H  H  N  R  K  Y  Y  *  Q  G  R  *  K  R  C  F  V  C  C  V  L  *  I  C  D  M  F  S  *  L  M  E  V  *  Y  G  V  C  I  E  *  N  *  L  L  C  V  G  C  F  *  M  V  I  W  C  N  T  Y  D  Q  T  S  L  *  Y  R  L  F  V  Q  I  K  K  K  S  *  Y  C  I  E  N  M  *  *  N  I  R  L  K  V  G  S  K  K  L  Y  C  Y  N  E  I  Y  I  Y  N  K  S  K  S  R  I  A  D  V  A  M  P  L  R  A  E  F  F  I  </second_frame>
            <third_frame>   Y  Y  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  S  L  G  K  R  F  V  N  Q  I  T  Y  S  T  S  R  N  S  A  N  S  S  S  T  A  L  S  G  R :   N  V  V  H  T  S  V  Y  D  K  N  I  E  E  Y  V  S  S  W  V  P  D  E  I  I  E  V  E  S  D  K  Y  K  Y  W  T  P  H  P  Q  T  G  V  F  G  P  A  T  D  H  I  I  K  Y  G  S  Q  F  S  T  V  D  S  V  L  E  Q  K  T  F  F  R  D  F  E  D  L  E  K  P  S  Y  P  *  V  S  E  N  I  T  T  E  N  T  T  S  R  E  G  E  R  G  V  S  F  V  V  F  Y  E  Y  V  I  C  L  V  N  *  W  K  Y  N  M  E  Y  V  *  N  K  T  S  Y  S  V  W  A  A  F  K  W  S  Y  G  A  I  H  T  I  K  L  L  C  N  I  V  C  L  S  K  L  K  K  K  V  S  I  V  *  R  I  C  N  R  T  *  D  *  K  L  V  P  R  S  Y  I  V  T  M  K  S  I  Y  I  I  N  L  N  Q  E  L  L  M  W  Q  C  L  *  G  L  N  F  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12149" stop="11956"/>
                    <exon start="11570" stop="11318"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFLSLGKRFVNQITYSTSRNSANSSSTALSGRNVVHTSVYDKNIEEYVSSWVPDEIIEVESDKYKYWTPHPQTGVFGPATDHIIKYGSQFSTVDSVLEQKTFFRDFEDLEKPSYP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12071" e_stop="10931"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="12071" e_stop="10931" e_length="1141"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12071" stop="11515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12069" stop="11392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12068" stop="11575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11577" stop="10931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11303" stop="10931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11224" stop="10942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392631" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGATGTGGCAATGCCTCTAAGGGCTGAATTTTTTATTT</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  L  S  L  G  K  R  F  V  N  Q  I  T  Y  S  T  S  R  N  S  A  N  S  S  S  T  A  L  S  G  R  Y  T  L  N  Q  Q  W  L  K  H  I  S  G  L  K  Q  K  *  N  K  L  *  I  *  I  V  N  N  F  N  I  V  D  F  F  *  F  L  I  N  N  I  T  I  L  I  F  H  E  I  *  Y  S  K  Y  V  I  F  L  L  I  *  I  L  N  S  Y  K  H  Q  L  V  L  L  W  I  N  T  Y  L  Y  V  *  N  K  I  L  I  M  V  T  K  F  Y  L  T  R  T  C  N  F  L  S  S  S  V  L  D  Q  F  E  L  I  T  F  N  L  F  F  F  *  I  *  L  C  Y  V  Q  E  C  G  A  H  V  S  V  *  Q  E  Y  R  G  I  C  V  I  V  G  T  *  *  N  N  R  G  R  I  G  Q  I  Q  V  L  D  S  S  S  P  N  R  G  V  W  A  S  Y  *  S  H  Y  K  I  W  F  S  I  L  H  G  R  F  C  V  G  T  K  D  I  F  S  *  F  R  G  S  G  E  A  *  L  S  L  S  F  R  K  H  H  N  R  K  Y  Y  *  Q  G  R  *  K  R  C  F  V  C  C  V  L  *  I  C  D  M  F  S  *  L  M  E  V  *  Y  G  V  C  I  E  *  N  *  L  L  C  V  G  C  F  *  M  V  I  W  C  N  T  Y  D  Q  T  S  L  *  Y  R  L  F  V  Q  I  K  K  K  S  *  Y  C  I  E  N  M  *  *  N  I  R  L  K  V  G  S  K  K  L  Y  C  Y  N  E  I  Y  I  Y  N  K  S  K  S  R  I  A  D  V  A  M  P  L  R  A  E  F  F  I  </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  *  A  W  G  N  D  L  *  T  R  *  L  I  Q  L  L  E  I  L  P  T  H  H  L  L  R  S  L  A  G  I  L  *  T  S  S  G  S  S  I  L  V  A  *  N  K  N  K  T  S  F  K  F  E  L  L  I  T  L  I  *  L  I  S  F  S  F  *  L  I  I  *  P  F  L  F  F  M  R  Y  N  T  P  N  M  S  Y  F  F  *  S  E  F  *  I  L  I  N  I  N  L  Y  Y  Y  G  L  I  L  I  Y  T  Y  K  I  K  F  *  L  W  L  L  S  S  T  L  P  E  P  V  T  F  S  L  A  L  S  L  I  S  S  S  *  L  L  S  I  C  F  F  F  K  S  N  Y  V  M  C  R  N  V  V  H  T  S  V  Y  D  K  N  I  E  E  Y  V  S  S  W  V  P  D  E  I  I  E  V  E  S  D  K  Y  K  Y  W  T  P  H  P  Q  T  G  V  F  G  P  A  T  D  H  I  I  K  Y  G  S  Q  F  S  T  V  D  S  V  L  E  Q  K  T  F  F  R  D  F  E  D  L  E  K  P  S  Y  P  *  V  S  E  N  I  T  T  E  N  T  T  S  R  E  G  E  R  G  V  S  F  V  V  F  Y  E  Y  V  I  C  L  V  N  *  W  K  Y  N  M  E  Y  V  *  N  K  T  S  Y  S  V  W  A  A  F  K  W  S  Y  G  A  I  H  T  I  K  L  L  C  N  I  V  C  L  S  K  L  K  K  K  V  S  I  V  *  R  I  C  N  R  T  *  D  *  K  L  V  P  R  S  Y  I  V  T  M  K  S  I  Y  I  I  N  L  N  Q  E  L  L  M  W  Q  C  L  *  G  L  N  F  L  F </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  K  L  G  E  T  I  C  E  P  D  N  L  F  N  F  S  K  F  C  Q  L  I  I  Y  C  A  L  W  Q  V  Y  S  E  P  A  V  A  Q  A  Y  *  W  P  K  T  K  I  K  Q  A  L  N  L  N  C  *  *  L  *  Y  S  *  F  L  L  V  F  N  *  *  Y  N  H  S  Y  F  S  *  D  I  I  L  Q  I  C  H  I  S  S  N  L  N  S  E  F  L  *  T  S  T  C  T  I  M  D  *  Y  L  F  I  R  I  K  *  N  F  D  Y  G  Y  *  V  L  P  Y  P  N  L  *  L  S  L  *  L  C  P  *  S  V  R  V  N  Y  F  Q  F  V  F  F  L  N  L  I  M  L  C  A  G  M  W  C  T  R  Q  C  M  T  R  I  *  R  N  M  C  H  R  G  Y  L  M  K  *  S  R  *  N  R  T  N  T  S  T  G  L  L  I  P  K  Q  G  C  L  G  Q  L  L  I  T  L  *  N  M  V  L  N  S  P  R  *  I  L  C  W  N  K  R  H  F  F  V  I  S  R  I  W  R  S  L  V  I  L  K  F  Q  K  T  S  Q  Q  K  I  L  L  A  G  K  V  K  E  V  F  R  L  L  C  S  M  N  M  *  Y  V  *  L  I  N  G  S  I  I  W  S  M  Y  R  I  K  L  A  T  L  C  G  L  L  L  N  G  H  M  V  Q  Y  I  R  S  N  F  S  V  I  S  F  V  C  P  N  *  K  K  K  L  V  L  Y  R  E  Y  V  I  E  H  K  I  K  S  W  F  Q  E  A  I  L  L  Q  *  N  L  Y  I  *  *  I  *  I  K  N  C  *  C  G  N  A  S  K  G  *  I  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11617" stop="11318"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLSICFFFKSNYVMCRNVVHTSVYDKNIEEYVSSWVPDEIIEVESDKYKYWTPHPQTGVFGPATDHIIKYGSQFSTVDSVLEQKTFFRDFEDLEKPSYP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="11011" PGL_stop="11503"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11011" e_stop="11503"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11011" e_stop="11503" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11011" stop="11503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11078" stop="11503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAACAATATAGCTTCTTGGAACCAACTTTTAATCTTATGTTCTATTACATATTCTCTATACAATACTAACTTTTTTTTTTAATTTGGACAAACAAACGATATTACAGAGAAGTTTGATCGTATGTATTGCACCATATGACCATTTAAAAGCAGCCCACACAGAGTAGCTAGTTTTATTCTATACATACTCCATATTATACTTCCATTAATTAACTAAACATATCACATATTCATAGAACACAACAAACGAAACACCTCTTTCACCTTCCCTGCTAGTAGTATTTTCTGTTGTGATGTTTTCTGAAACTTAAGGATAACTAGGCTTCTCCAGATCCTCGAAATCACGAAAAAATGTCTTTTGTTCCAACACAGAATCTACCGTGGAGAATTGAGAACCATATTTTATAATGTGATCAGTAGCTGGCCCAAACACCCCTGTTTGGGGATGAGGAGTCCAGTACTTGTATTTGTCCGATTCTACCTCGATTATTTC</gDNA_template>
            <first_frame> *  Q  Y  S  F  L  E  P  T  F  N  L  M  F  Y  Y  I  F  S  I  Q  Y  *  L  F  F  L  I  W  T  N  K  R  Y  Y  R  E  V  *  S  Y  V  L  H  H  M  T  I  *  K  Q  P  T  Q  S  S  *  F  Y  S  I  H  T  P  Y  Y  T  S  I  N  *  L  N  I  S  H  I  H  R  T  Q  Q  T  K  H  L  F  H  L  P  C  *  *  Y  F  L  L  *  C  F  L  K  L  K  D  N  *  A  S  P  D  P  R  N  H  E  K  M  S  F  V  P  T  Q  N  L  P  W  R  I  E  N  H  I  L  *  C  D  Q  *  L  A  Q  T  P  L  F  G  D  E  E  S  S  T  C  I  C  P  I  L  P  R  L  F  </first_frame>
            <second_frame>  N  N  I  A  S  W  N  Q  L  L  I  L  C  S  I  T  Y  S  L  Y  N  T  N  F  F  F  *  F  G  Q  T  N  D  I  T  E  K  F  D  R  M  Y  C  T  I  *  P  F  K  S  S  P  H  R  V  A  S  F  I  L  Y  I  L  H  I  I  L  P  L  I  N  *  T  Y  H  I  F  I  E  H  N  K  R  N  T  S  F  T  F  P  A  S  S  I  F  C  C  D  V  F  *  N  L  R  I  T  R  L  L  Q  I  L  E  I  T  K  K  C  L  L  F  Q  H  R  I  Y  R  G  E  L  R  T  I  F  Y  N  V  I  S  S  W  P  K  H  P  C  L  G  M  R  S  P  V  L  V  F  V  R  F  Y  L  D  Y  F </second_frame>
            <third_frame>   T  I  *  L  L  G  T  N  F  *  S  Y  V  L  L  H  I  L  Y  T  I  L  T  F  F  F  N  L  D  K  Q  T  I  L  Q  R  S  L  I  V  C  I  A  P  Y  D  H  L  K  A  A  H  T  E  *  L  V  L  F  Y  T  Y  S  I  L  Y  F  H  *  L  T  K  H  I  T  Y  S  *  N  T  T  N  E  T  P  L  S  P  S  L  L  V  V  F  S  V  V  M  F  S  E  T  *  G  *  L  G  F  S  R  S  S  K  S  R  K  N  V  F  C  S  N  T  E  S  T  V  E  N  *  E  P  Y  F  I  M  *  S  V  A  G  P  N  T  P  V  W  G  *  G  V  Q  Y  L  Y  L  S  D  S  T  S  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0304I22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="17097" PGL_stop="24799"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17097" e_stop="18470"/>
            <exon e_start="18738" e_stop="19034"/>
            <exon e_start="19488" e_stop="19579"/>
            <exon e_start="23220" e_stop="24799"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.999"/>
          <exon-intron don_prob="0.940" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="17097" e_stop="18470" e_length="1374"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18471" i_stop="18737" i_length="267"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18738" e_stop="19034" e_length="297"/>
          </exon>
          <intron i_serial="2" don_prob="0.940" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19035" i_stop="19487" i_length="453"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19488" e_stop="19579" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.997">
            <gDNA_intron_boundary i_start="19580" i_stop="23219" i_length="3640"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23220" e_stop="24799" e_length="1580"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17097" stop="18470"/>
              <exon start="18738" stop="19034"/>
              <exon start="19488" stop="19579"/>
              <exon start="23220" stop="24344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17848" stop="18470"/>
              <exon start="18738" stop="18852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17963" stop="18470"/>
              <exon start="18738" stop="19034"/>
              <exon start="19488" stop="19541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19555" stop="19579"/>
              <exon start="23220" stop="23696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23529" stop="24215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24205" stop="24768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24646" stop="24799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229530" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATTCATTTTTGGGGTTTCTGGCTTTCTCTTTCTCTTGACCACTAATGGCATCAAGTTCTTGAATCAATGAAAGTTGGATGTTTTTGTTGAACTAAAGAAAGGTGCTTTGGCTGTGAATCTCAATAGGGTTATAAAGGTTTGATTTTTTTGATCTGTTTGAGTGGTTTTGTGGGATTTTCATTTTTACTGTACTTGTATGATTGAACCCTTCTTGGAGAACCATCTTTTTCCTCTTTTGAGTGAGAGTTGTTTGCTGTAATTTTTTTCTTTGTTAATCTGGAAATTGGGAGAAAGAGAGAAAGAAGCCCCTTTGCTAGATTTCCTTTGTGAAATCTTGAAAGTTCTTCAATTTGGTATCTTTTTCTGGTAATGCTAATTGAAGATTTGGGGAATGGCTACTTTGGTACCTGGTGTTCTATTGAAGCTTCTTCAGCATATGAACACAGATGTGAAAGTTGCTGGTGAGCATAGGTCATCTCTGTTGCAAGTGGTCAGCATTGTGCCTGCATTAGCAGGTGGGGAGCTTTTTCCTAACCAAGGGTTCTACCTAAAGGTATCAGATTCTTCTCATGCTACTTATGTATCTTTGCCTGATGAACATGATGATCTTATTCTTAGTGATAAGATTCAATTGGGTCAGTTCATTCATGTTGAGAGGCTTGAAGCTGCCTCACCTGTGCCTATACTTAGAGGGGTTAGGCCCGTCCCTGGACGACACCCTTGTGTTGGAACTCCCGAAGATATAGTAGCAACTCATTCTTTAGGCTTCCTAAATAACAATGGTAATCTGTCTCCTGGTTCAAAATCGCGAGACAAAACTAAGTCTCCTTCAAAAGCATTAGGTAATAGTCATGTGGCGGCGAAAGATAATAAATCTGCAGTTTCGAGATCAAATGGTGGTACCAAACAGGAAAAAGTGGAAAAAAAGAAGCCTACTTTGACTTGGTCGAAGTCCCACTTGTCAAAGTTAGCATTAAATGTAGTGGAGAAGAAGGATTCTCTAATGAGAGTAAAATCATCTTCTAGCTCAAGATCAATACCCACATCTCCTACAAGTTGTTATTCATTACCGACTTCTTTCGAGAAGTTTTCAAATGGGGTTAAGCTACAAGCAAAGGTTAAGGGCTTGGAACGTTTGGAGAAAGCAACAACTAAACCTGGAGTGGAGAAGTCTAGTTCTGTTCGTGGGGCGAGTCCAACACCGAAGAGACTGCTGGGTGGGAATCCATTGAAGAATTATCTTCAAGGACTCGAATTGGAGCCTAAGGCCCTGAGGAAGAGCTGGGAAGGGAATATGGATTTGAAGAGTAGAGAGAGTCCCAGATTGAGGGTCAACAAGCATGATTTGAAGCCTGAACCGAGGAGCACTTCT : GTTCCAAGAAAATCAACTAGTGAAAAATTGACTAGTAAAGAAGATAACCGGGGAATACTTGCAAAATCATCCAAAGAGGAAAATAAGGCTCATACATCCTTAAAGAAGTCCACAAATGGAGAGCCTGTTGATGCTGATAAATCAAGTAACCAGAAAATATCCAAGGGAAGAAAGCAACCTGGGGAAGTCAATAATGGCTTACAAGACTTGGTCAAAGTTGCTGTCAGTAATAGAATTTTAGCAGATGGAAATGTTGCCTGGTCTTCACTCCCATCTTCTCTCACAAAGATTGGAAAG : GAAGTCATGAAGCACAGAGACGCCGCACAGGTAGCAGCCATTGAGGCTATGCAGGTGGCTTCGGCTTCTGAAAGCTTACTAAGATGTCTAAG : CACATATTCTGAGTTGAGCTCCTCGGCAAAGGAAGATAACGCACAGCCTGCTGTTGAGCAATTCTTGGCGCTGCATGCGAGTTTGAAGAATGTTCACCTTGTTGGTGATGCTTTATCCAAGACCATATCAGCTGCTGGTTCAGAATCAGATCATGAAGAAAACCCTTCTGAAGAAGCACTTAAGGCTGTATCAGAAAAACGGAAGCAAGCAACTCTATGGGTCAATGCTGCGTTGGCTACCAATCTGTCATCATTCTCAGTGTATAGCAAAAAAGCAACTTCATCTCCAATTGCCCCTTCAGCTCCCTCGCCAAGCCCAAAGACTATCGCTCTCAATCAACCTATGCTAGTCCTTGATAACTCAACCAAAAGTACTCTTGCAAAACCTCAAGCCAAACCCCGCCCGACAATGAGTTCTAAGATTCAGTCATCAGGATCTCAACGGCGCTTAGCAGATGGGATAGCTTCTAATCAAAAGCCAAAATCTCCTCCTCCAGCGGATTGGGTCAGAGGAGACGGTCTTGAAGAGGCTGTTGACTTAGCCGAGATGTTACGAGTAGCGTCCCAAGACTGGTTCTTAGGATTTGTAGAAAGGTTCTTGGATGCTGATGTTGATGCCTCAGCTTTATCAGATAATGGTCAAATAGCCGGCATGTTATCCCAGCTGAAGAGTGTGAACGACTGGTTAGATGAGATCTCCTCTAGCAAGGATGATGAAAGTCCCCAAATTGCTTCTGAGACCATCGATAGGATAAGAAAAAAGATCTATGAATATCTTCTCACTCATGTGGAGTCTGCTGCAGCAGCTCTTGGTGGTGGCAGTGGCGGTAGCTCACAAGTGCCACCTACAATAGAAACCAAAACGAGAAAATGAGTTCTATTGCATAATGCATACTACTAGCAACTCACCTTTCATATTTGAAGCATGCTCCAATAGTCCTTCAACCGCCAAGTGGTTAAAAGAGCTGAAAGTTTTAGGATGTGTATAGATTCTAAAATTGGTCGAGGTAGAGTAGTTTAGTATATATATTGTGCAGACAGGGAGTTACATGAAGTTCAAGATTTCCTTTTTTCTTTACCTGGAAACTTTTTCTCATAAATTATGACTAGCTCAAAGTCGTGAGTATATACTTATGTGAGTTCTGGAGAAAAGGGAACATGTCCTTTCTCCTTACCTTGAACGAGTAACAATGAACTTGTTACTGAAATTAACCTTATAGTTTGATTGATGACGTTATGCATCTCAGTGTTATCATTTGAAGTAGGAAGTTGTGGACTTGTTGGAACTTCAAGGTTTTCAAGTTTCTTTCACAATCTTGCTAGGAATGACGGAGTGAGCTGTCCAAGCTTGGGTGGACAGAGTTGCCTGGTACTTGTGCTAGTTGGAGGTAGCAATTTGGCGTGTGACTTCTTAGCTTGCTCGAGTTTGAAGTGTAATAATTATTGTAGTACCAGTAAAAGATTAGCTTCAGATCATGTCCCATGTACTTATTTTTCTAATAACAAAAACCATATTACAACTGAGACAAGGAGTAGCAGATGACATTAAAATGATCATACAGTAAAGATAAGATTGAGAA</gDNA_template>
            <first_frame> *  F  I  F  G  V  S  G  F  L  F  L  L  T  T  N  G  I  K  F  L  N  Q  *  K  L  D  V  F  V  E  L  K  K  G  A  L  A  V  N  L  N  R  V  I  K  V  *  F  F  *  S  V  *  V  V  L  W  D  F  H  F  Y  C  T  C  M  I  E  P  F  L  E  N  H  L  F  P  L  L  S  E  S  C  L  L  *  F  F  S  L  L  I  W  K  L  G  E  R  E  K  E  A  P  L  L  D  F  L  C  E  I  L  K  V  L  Q  F  G  I  F  F  W  *  C  *  L  K  I  W  G  M  A  T  L  V  P  G  V  L  L  K  L  L  Q  H  M  N  T  D  V  K  V  A  G  E  H  R  S  S  L  L  Q  V  V  S  I  V  P  A  L  A  G  G  E  L  F  P  N  Q  G  F  Y  L  K  V  S  D  S  S  H  A  T  Y  V  S  L  P  D  E  H  D  D  L  I  L  S  D  K  I  Q  L  G  Q  F  I  H  V  E  R  L  E  A  A  S  P  V  P  I  L  R  G  V  R  P  V  P  G  R  H  P  C  V  G  T  P  E  D  I  V  A  T  H  S  L  G  F  L  N  N  N  G  N  L  S  P  G  S  K  S  R  D  K  T  K  S  P  S  K  A  L  G  N  S  H  V  A  A  K  D  N  K  S  A  V  S  R  S  N  G  G  T  K  Q  E  K  V  E  K  K  K  P  T  L  T  W  S  K  S  H  L  S  K  L  A  L  N  V  V  E  K  K  D  S  L  M  R  V  K  S  S  S  S  S  R  S  I  P  T  S  P  T  S  C  Y  S  L  P  T  S  F  E  K  F  S  N  G  V  K  L  Q  A  K  V  K  G  L  E  R  L  E  K  A  T  T  K  P  G  V  E  K  S  S  S  V  R  G  A  S  P  T  P  K  R  L  L  G  G  N  P  L  K  N  Y  L  Q  G  L  E  L  E  P  K  A  L  R  K  S  W  E  G  N  M  D  L  K  S  R  E  S  P  R  L  R  V  N  K  H  D  L  K  P  E  P  R  S  T  S  :  V  P  R  K  S  T  S  E  K  L  T  S  K  E  D  N  R  G  I  L  A  K  S  S  K  E  E  N  K  A  H  T  S  L  K  K  S  T  N  G  E  P  V  D  A  D  K  S  S  N  Q  K  I  S  K  G  R  K  Q  P  G  E  V  N  N  G  L  Q  D  L  V  K  V  A  V  S  N  R  I  L  A  D  G  N  V  A  W  S  S  L  P  S  S  L  T  K  I  G  K  :  E  V  M  K  H  R  D  A  A  Q  V  A  A  I  E  A  M  Q  V  A  S  A  S  E  S  L  L  R  C  L  S :   T  Y  S  E  L  S  S  S  A  K  E  D  N  A  Q  P  A  V  E  Q  F  L  A  L  H  A  S  L  K  N  V  H  L  V  G  D  A  L  S  K  T  I  S  A  A  G  S  E  S  D  H  E  E  N  P  S  E  E  A  L  K  A  V  S  E  K  R  K  Q  A  T  L  W  V  N  A  A  L  A  T  N  L  S  S  F  S  V  Y  S  K  K  A  T  S  S  P  I  A  P  S  A  P  S  P  S  P  K  T  I  A  L  N  Q  P  M  L  V  L  D  N  S  T  K  S  T  L  A  K  P  Q  A  K  P  R  P  T  M  S  S  K  I  Q  S  S  G  S  Q  R  R  L  A  D  G  I  A  S  N  Q  K  P  K  S  P  P  P  A  D  W  V  R  G  D  G  L  E  E  A  V  D  L  A  E  M  L  R  V  A  S  Q  D  W  F  L  G  F  V  E  R  F  L  D  A  D  V  D  A  S  A  L  S  D  N  G  Q  I  A  G  M  L  S  Q  L  K  S  V  N  D  W  L  D  E  I  S  S  S  K  D  D  E  S  P  Q  I  A  S  E  T  I  D  R  I  R  K  K  I  Y  E  Y  L  L  T  H  V  E  S  A  A  A  A  L  G  G  G  S  G  G  S  S  Q  V  P  P  T  I  E  T  K  T  R  K  *  V  L  L  H  N  A  Y  Y  *  Q  L  T  F  H  I  *  S  M  L  Q  *  S  F  N  R  Q  V  V  K  R  A  E  S  F  R  M  C  I  D  S  K  I  G  R  G  R  V  V  *  Y  I  Y  C  A  D  R  E  L  H  E  V  Q  D  F  L  F  S  L  P  G  N  F  F  S  *  I  M  T  S  S  K  S  *  V  Y  T  Y  V  S  S  G  E  K  G  T  C  P  F  S  L  P  *  T  S  N  N  E  L  V  T  E  I  N  L  I  V  *  L  M  T  L  C  I  S  V  L  S  F  E  V  G  S  C  G  L  V  G  T  S  R  F  S  S  F  F  H  N  L  A  R  N  D  G  V  S  C  P  S  L  G  G  Q  S  C  L  V  L  V  L  V  G  G  S  N  L  A  C  D  F  L  A  C  S  S  L  K  C  N  N  Y  C  S  T  S  K  R  L  A  S  D  H  V  P  C  T  Y  F  S  N  N  K  N  H  I  T  T  E  T  R  S  S  R  *  H  *  N  D  H  T  V  K  I  R  L  R  </first_frame>
            <second_frame>  D  S  F  L  G  F  L  A  F  S  F  S  *  P  L  M  A  S  S  S  *  I  N  E  S  W  M  F  L  L  N  *  R  K  V  L  W  L  *  I  S  I  G  L  *  R  F  D  F  F  D  L  F  E  W  F  C  G  I  F  I  F  T  V  L  V  *  L  N  P  S  W  R  T  I  F  F  L  F  *  V  R  V  V  C  C  N  F  F  L  C  *  S  G  N  W  E  K  E  R  K  K  P  L  C  *  I  S  F  V  K  S  *  K  F  F  N  L  V  S  F  S  G  N  A  N  *  R  F  G  E  W  L  L  W  Y  L  V  F  Y  *  S  F  F  S  I  *  T  Q  M  *  K  L  L  V  S  I  G  H  L  C  C  K  W  S  A  L  C  L  H  *  Q  V  G  S  F  F  L  T  K  G  S  T  *  R  Y  Q  I  L  L  M  L  L  M  Y  L  C  L  M  N  M  M  I  L  F  L  V  I  R  F  N  W  V  S  S  F  M  L  R  G  L  K  L  P  H  L  C  L  Y  L  E  G  L  G  P  S  L  D  D  T  L  V  L  E  L  P  K  I  *  *  Q  L  I  L  *  A  S  *  I  T  M  V  I  C  L  L  V  Q  N  R  E  T  K  L  S  L  L  Q  K  H  *  V  I  V  M  W  R  R  K  I  I  N  L  Q  F  R  D  Q  M  V  V  P  N  R  K  K  W  K  K  R  S  L  L  *  L  G  R  S  P  T  C  Q  S  *  H  *  M  *  W  R  R  R  I  L  *  *  E  *  N  H  L  L  A  Q  D  Q  Y  P  H  L  L  Q  V  V  I  H  Y  R  L  L  S  R  S  F  Q  M  G  L  S  Y  K  Q  R  L  R  A  W  N  V  W  R  K  Q  Q  L  N  L  E  W  R  S  L  V  L  F  V  G  R  V  Q  H  R  R  D  C  W  V  G  I  H  *  R  I  I  F  K  D  S  N  W  S  L  R  P  *  G  R  A  G  K  G  I  W  I  *  R  V  E  R  V  P  D  *  G  S  T  S  M  I  *  S  L  N  R  G  A  L  L :   F  Q  E  N  Q  L  V  K  N  *  L  V  K  K  I  T  G  E  Y  L  Q  N  H  P  K  R  K  I  R  L  I  H  P  *  R  S  P  Q  M  E  S  L  L  M  L  I  N  Q  V  T  R  K  Y  P  R  E  E  S  N  L  G  K  S  I  M  A  Y  K  T  W  S  K  L  L  S  V  I  E  F  *  Q  M  E  M  L  P  G  L  H  S  H  L  L  S  Q  R  L  E  R :   K  S  *  S  T  E  T  P  H  R  *  Q  P  L  R  L  C  R  W  L  R  L  L  K  A  Y  *  D  V  *   : A  H  I  L  S  *  A  P  R  Q  R  K  I  T  H  S  L  L  L  S  N  S  W  R  C  M  R  V  *  R  M  F  T  L  L  V  M  L  Y  P  R  P  Y  Q  L  L  V  Q  N  Q  I  M  K  K  T  L  L  K  K  H  L  R  L  Y  Q  K  N  G  S  K  Q  L  Y  G  S  M  L  R  W  L  P  I  C  H  H  S  Q  C  I  A  K  K  Q  L  H  L  Q  L  P  L  Q  L  P  R  Q  A  Q  R  L  S  L  S  I  N  L  C  *  S  L  I  T  Q  P  K  V  L  L  Q  N  L  K  P  N  P  A  R  Q  *  V  L  R  F  S  H  Q  D  L  N  G  A  *  Q  M  G  *  L  L  I  K  S  Q  N  L  L  L  Q  R  I  G  S  E  E  T  V  L  K  R  L  L  T  *  P  R  C  Y  E  *  R  P  K  T  G  S  *  D  L  *  K  G  S  W  M  L  M  L  M  P  Q  L  Y  Q  I  M  V  K  *  P  A  C  Y  P  S  *  R  V  *  T  T  G  *  M  R  S  P  L  A  R  M  M  K  V  P  K  L  L  L  R  P  S  I  G  *  E  K  R  S  M  N  I  F  S  L  M  W  S  L  L  Q  Q  L  L  V  V  A  V  A  V  A  H  K  C  H  L  Q  *  K  P  K  R  E  N  E  F  Y  C  I  M  H  T  T  S  N  S  P  F  I  F  E  A  C  S  N  S  P  S  T  A  K  W  L  K  E  L  K  V  L  G  C  V  *  I  L  K  L  V  E  V  E  *  F  S  I  Y  I  V  Q  T  G  S  Y  M  K  F  K  I  S  F  F  L  Y  L  E  T  F  S  H  K  L  *  L  A  Q  S  R  E  Y  I  L  M  *  V  L  E  K  R  E  H  V  L  S  P  Y  L  E  R  V  T  M  N  L  L  L  K  L  T  L  *  F  D  *  *  R  Y  A  S  Q  C  Y  H  L  K  *  E  V  V  D  L  L  E  L  Q  G  F  Q  V  S  F  T  I  L  L  G  M  T  E  *  A  V  Q  A  W  V  D  R  V  A  W  Y  L  C  *  L  E  V  A  I  W  R  V  T  S  *  L  A  R  V  *  S  V  I  I  I  V  V  P  V  K  D  *  L  Q  I  M  S  H  V  L  I  F  L  I  T  K  T  I  L  Q  L  R  Q  G  V  A  D  D  I  K  M  I  I  Q  *  R  *  D  *  E </second_frame>
            <third_frame>   I  H  F  W  G  F  W  L  S  L  S  L  D  H  *  W  H  Q  V  L  E  S  M  K  V  G  C  F  C  *  T  K  E  R  C  F  G  C  E  S  Q  *  G  Y  K  G  L  I  F  L  I  C  L  S  G  F  V  G  F  S  F  L  L  Y  L  Y  D  *  T  L  L  G  E  P  S  F  S  S  F  E  *  E  L  F  A  V  I  F  F  F  V  N  L  E  I  G  R  K  R  E  R  S  P  F  A  R  F  P  L  *  N  L  E  S  S  S  I  W  Y  L  F  L  V  M  L  I  E  D  L  G  N  G  Y  F  G  T  W  C  S  I  E  A  S  S  A  Y  E  H  R  C  E  S  C  W  *  A  *  V  I  S  V  A  S  G  Q  H  C  A  C  I  S  R  W  G  A  F  S  *  P  R  V  L  P  K  G  I  R  F  F  S  C  Y  L  C  I  F  A  *  *  T  *  *  S  Y  S  *  *  *  D  S  I  G  S  V  H  S  C  *  E  A  *  S  C  L  T  C  A  Y  T  *  R  G  *  A  R  P  W  T  T  P  L  C  W  N  S  R  R  Y  S  S  N  S  F  F  R  L  P  K  *  Q  W  *  S  V  S  W  F  K  I  A  R  Q  N  *  V  S  F  K  S  I  R  *  *  S  C  G  G  E  R  *  *  I  C  S  F  E  I  K  W  W  Y  Q  T  G  K  S  G  K  K  E  A  Y  F  D  L  V  E  V  P  L  V  K  V  S  I  K  C  S  G  E  E  G  F  S  N  E  S  K  I  I  F  *  L  K  I  N  T  H  I  S  Y  K  L  L  F  I  T  D  F  F  R  E  V  F  K  W  G  *  A  T  S  K  G  *  G  L  G  T  F  G  E  S  N  N  *  T  W  S  G  E  V  *  F  C  S  W  G  E  S  N  T  E  E  T  A  G  W  E  S  I  E  E  L  S  S  R  T  R  I  G  A  *  G  P  E  E  E  L  G  R  E  Y  G  F  E  E  *  R  E  S  Q  I  E  G  Q  Q  A  *  F  E  A  *  T  E  E  H  F   : C  S  K  K  I  N  *  *  K  I  D  *  *  R  R  *  P  G  N  T  C  K  I  I  Q  R  G  K  *  G  S  Y  I  L  K  E  V  H  K  W  R  A  C  *  C  *  *  I  K  *  P  E  N  I  Q  G  K  K  A  T  W  G  S  Q  *  W  L  T  R  L  G  Q  S  C  C  Q  *  *  N  F  S  R  W  K  C  C  L  V  F  T  P  I  F  S  H  K  D  W  K   : G  S  H  E  A  Q  R  R  R  T  G  S  S  H  *  G  Y  A  G  G  F  G  F  *  K  L  T  K  M  S  K  :  H  I  F  *  V  E  L  L  G  K  G  R  *  R  T  A  C  C  *  A  I  L  G  A  A  C  E  F  E  E  C  S  P  C  W  *  C  F  I  Q  D  H  I  S  C  W  F  R  I  R  S  *  R  K  P  F  *  R  S  T  *  G  C  I  R  K  T  E  A  S  N  S  M  G  Q  C  C  V  G  Y  Q  S  V  I  I  L  S  V  *  Q  K  S  N  F  I  S  N  C  P  F  S  S  L  A  K  P  K  D  Y  R  S  Q  S  T  Y  A  S  P  *  *  L  N  Q  K  Y  S  C  K  T  S  S  Q  T  P  P  D  N  E  F  *  D  S  V  I  R  I  S  T  A  L  S  R  W  D  S  F  *  S  K  A  K  I  S  S  S  S  G  L  G  Q  R  R  R  S  *  R  G  C  *  L  S  R  D  V  T  S  S  V  P  R  L  V  L  R  I  C  R  K  V  L  G  C  *  C  *  C  L  S  F  I  R  *  W  S  N  S  R  H  V  I  P  A  E  E  C  E  R  L  V  R  *  D  L  L  *  Q  G  *  *  K  S  P  N  C  F  *  D  H  R  *  D  K  K  K  D  L  *  I  S  S  H  S  C  G  V  C  C  S  S  S  W  W  W  Q  W  R  *  L  T  S  A  T  Y  N  R  N  Q  N  E  K  M  S  S  I  A  *  C  I  L  L  A  T  H  L  S  Y  L  K  H  A  P  I  V  L  Q  P  P  S  G  *  K  S  *  K  F  *  D  V  Y  R  F  *  N  W  S  R  *  S  S  L  V  Y  I  L  C  R  Q  G  V  T  *  S  S  R  F  P  F  F  F  T  W  K  L  F  L  I  N  Y  D  *  L  K  V  V  S  I  Y  L  C  E  F  W  R  K  G  N  M  S  F  L  L  T  L  N  E  *  Q  *  T  C  Y  *  N  *  P  Y  S  L  I  D  D  V  M  H  L  S  V  I  I  *  S  R  K  L  W  T  C  W  N  F  K  V  F  K  F  L  S  Q  S  C  *  E  *  R  S  E  L  S  K  L  G  W  T  E  L  P  G  T  C  A  S  W  R  *  Q  F  G  V  *  L  L  S  L  L  E  F  E  V  *  *  L  L  *  Y  Q  *  K  I  S  F  R  S  C  P  M  Y  L  F  F  *  *  Q  K  P  Y  Y  N  *  D  K  E  *  Q  M  T  L  K  *  S  Y  S  K  D  K  I  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17475" stop="18470"/>
                    <exon start="18738" stop="19034"/>
                    <exon start="19488" stop="19579"/>
                    <exon start="23220" stop="24093"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2256</number_coding_nucleotides>
                  <number_encoded_amino_acids>752</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKIWGMATLVPGVLLKLLQHMNTDVKVAGEHRSSLLQVVSIVPALAGGELFPNQGFYLKVSDSSHATYVSLPDEHDDLILSDKIQLGQFIHVERLEAASPVPILRGVRPVPGRHPCVGTPEDIVATHSLGFLNNNGNLSPGSKSRDKTKSPSKALGNSHVAAKDNKSAVSRSNGGTKQEKVEKKKPTLTWSKSHLSKLALNVVEKKDSLMRVKSSSSSRSIPTSPTSCYSLPTSFEKFSNGVKLQAKVKGLERLEKATTKPGVEKSSSVRGASPTPKRLLGGNPLKNYLQGLELEPKALRKSWEGNMDLKSRESPRLRVNKHDLKPEPRSTSVPRKSTSEKLTSKEDNRGILAKSSKEENKAHTSLKKSTNGEPVDADKSSNQKISKGRKQPGEVNNGLQDLVKVAVSNRILADGNVAWSSLPSSLTKIGKEVMKHRDAAQVAAIEAMQVASASESLLRCLSTYSELSSSAKEDNAQPAVEQFLALHASLKNVHLVGDALSKTISAAGSESDHEENPSEEALKAVSEKRKQATLWVNAALATNLSSFSVYSKKATSSPIAPSAPSPSPKTIALNQPMLVLDNSTKSTLAKPQAKPRPTMSSKIQSSGSQRRLADGIASNQKPKSPPPADWVRGDGLEEAVDLAEMLRVASQDWFLGFVERFLDADVDASALSDNGQIAGMLSQLKSVNDWLDEISSSKDDESPQIASETIDRIRKKIYEYLLTHVESAAAALGGGSGGSSQVPPTIETKTRK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24445" stop="24762"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMTLCISVLSFEVGSCGLVGTSRFSSFFHNLARNDGVSCPSLGGQSCLVLVLVGGSNLACDFLACSSLKCNNYCSTSKRLASDHVPCTYFSNNKNHITTETRSSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="24797" PGL_stop="24255"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24797" e_stop="24255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="24797" e_stop="24255" e_length="543"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24797" stop="24255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310479" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCAATCTTATCTTTACTGTATGATCATTTTAATGTCATCTGCTACTCCTTGTCTCAGTTGTAATATGGTTTTTGTTATTAGAAAAATAAGTACATGGGACATGATCTGAAGCTAATCTTTTACTGGTACTACAATAATTATTACACTTCAAACTCGAGCAAGCTAAGAAGTCACACGCCAAATTGCTACCTCCAACTAGCACAAGTACCAGGCAACTCTGTCCACCCAAGCTTGGACAGCTCACTCCGTCATTCCTAGCAAGATTGTGAAAGAAACTTGAAAACCTTGAAGTTCCAACAAGTCCACAACTTCCTACTTCAAATGATAACACTGAGATGCATAACGTCATCAATCAAACTATAAGGTTAATTTCAGTAACAAGTTCATTGTTACTCGTTCAAGGTAAGGAGAAAGGACATGTTCCCTTTTCTCCAGAACTCACATAAGTATATACTCACGACTTTGAGCTAGTCATAATTTATGAGAAAAAGTTTCCAGGTAAAGAAAAAAGGAAATCTTGAACTTCATGTAACTCCCTGTCT</gDNA_template>
            <first_frame> L  N  L  I  F  T  V  *  S  F  *  C  H  L  L  L  L  V  S  V  V  I  W  F  L  L  L  E  K  *  V  H  G  T  *  S  E  A  N  L  L  L  V  L  Q  *  L  L  H  F  K  L  E  Q  A  K  K  S  H  A  K  L  L  P  P  T  S  T  S  T  R  Q  L  C  P  P  K  L  G  Q  L  T  P  S  F  L  A  R  L  *  K  K  L  E  N  L  E  V  P  T  S  P  Q  L  P  T  S  N  D  N  T  E  M  H  N  V  I  N  Q  T  I  R  L  I  S  V  T  S  S  L  L  L  V  Q  G  K  E  K  G  H  V  P  F  S  P  E  L  T  *  V  Y  T  H  D  F  E  L  V  I  I  Y  E  K  K  F  P  G  K  E  K  R  K  S  *  T  S  C  N  S  L  S </first_frame>
            <second_frame>  S  I  L  S  L  L  Y  D  H  F  N  V  I  C  Y  S  L  S  Q  L  *  Y  G  F  C  Y  *  K  N  K  Y  M  G  H  D  L  K  L  I  F  Y  W  Y  Y  N  N  Y  Y  T  S  N  S  S  K  L  R  S  H  T  P  N  C  Y  L  Q  L  A  Q  V  P  G  N  S  V  H  P  S  L  D  S  S  L  R  H  S  *  Q  D  C  E  R  N  L  K  T  L  K  F  Q  Q  V  H  N  F  L  L  Q  M  I  T  L  R  C  I  T  S  S  I  K  L  *  G  *  F  Q  *  Q  V  H  C  Y  S  F  K  V  R  R  K  D  M  F  P  F  L  Q  N  S  H  K  Y  I  L  T  T  L  S  *  S  *  F  M  R  K  S  F  Q  V  K  K  K  G  N  L  E  L  H  V  T  P  C   </second_frame>
            <third_frame>   Q  S  Y  L  Y  C  M  I  I  L  M  S  S  A  T  P  C  L  S  C  N  M  V  F  V  I  R  K  I  S  T  W  D  M  I  *  S  *  S  F  T  G  T  T  I  I  I  T  L  Q  T  R  A  S  *  E  V  T  R  Q  I  A  T  S  N  *  H  K  Y  Q  A  T  L  S  T  Q  A  W  T  A  H  S  V  I  P  S  K  I  V  K  E  T  *  K  P  *  S  S  N  K  S  T  T  S  Y  F  K  *  *  H  *  D  A  *  R  H  Q  S  N  Y  K  V  N  F  S  N  K  F  I  V  T  R  S  R  *  G  E  R  T  C  S  L  F  S  R  T  H  I  S  I  Y  S  R  L  *  A  S  H  N  L  *  E  K  V  S  R  *  R  K  K  E  I  L  N  F  M  *  L  P  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0304I22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="31234" PGL_stop="27351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31234" e_stop="30712"/>
            <exon e_start="29991" e_stop="29848"/>
            <exon e_start="29755" e_stop="29489"/>
            <exon e_start="27956" e_stop="27848"/>
            <exon e_start="27763" e_stop="27351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="0.990"/>
          <exon-intron don_prob="0.761" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.581" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="31234" e_stop="30712" e_length="523"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="30711" i_stop="29992" i_length="720"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29991" e_stop="29848" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.761" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29847" i_stop="29756" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29755" e_stop="29489" e_length="267"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.996">
            <gDNA_intron_boundary i_start="29488" i_stop="27957" i_length="1532"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27956" e_stop="27848" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.581" acc_prob="1.000">
            <gDNA_intron_boundary i_start="27847" i_stop="27764" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="27763" e_stop="27351" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31234" stop="30712"/>
              <exon start="29991" stop="29904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31155" stop="30712"/>
              <exon start="29991" stop="29848"/>
              <exon start="29755" stop="29489"/>
              <exon start="27956" stop="27848"/>
              <exon start="27763" stop="27392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31150" stop="30712"/>
              <exon start="29991" stop="29932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31146" stop="30712"/>
              <exon start="29991" stop="29848"/>
              <exon start="29755" stop="29745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31143" stop="30712"/>
              <exon start="29991" stop="29848"/>
              <exon start="29755" stop="29543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31135" stop="30712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31133" stop="30712"/>
              <exon start="29991" stop="29875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31129" stop="30712"/>
              <exon start="29991" stop="29931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31118" stop="30712"/>
              <exon start="29991" stop="29848"/>
              <exon start="29755" stop="29493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31061" stop="30809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30997" stop="30712"/>
              <exon start="29991" stop="29848"/>
              <exon start="29755" stop="29535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30997" stop="30712"/>
              <exon start="29991" stop="29848"/>
              <exon start="29755" stop="29664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30996" stop="30712"/>
              <exon start="29991" stop="29848"/>
              <exon start="29755" stop="29489"/>
              <exon start="27956" stop="27848"/>
              <exon start="27763" stop="27633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30755" stop="30712"/>
              <exon start="29991" stop="29848"/>
              <exon start="29755" stop="29489"/>
              <exon start="27956" stop="27848"/>
              <exon start="27763" stop="27710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30755" stop="30712"/>
              <exon start="29991" stop="29848"/>
              <exon start="29755" stop="29489"/>
              <exon start="27956" stop="27848"/>
              <exon start="27763" stop="27711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30734" stop="30712"/>
              <exon start="29991" stop="29848"/>
              <exon start="29755" stop="29745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29978" stop="29848"/>
              <exon start="29755" stop="29497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29868" stop="29848"/>
              <exon start="29755" stop="29489"/>
              <exon start="27956" stop="27848"/>
              <exon start="27763" stop="27449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29657" stop="29489"/>
              <exon start="27956" stop="27848"/>
              <exon start="27763" stop="27351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260837" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29565" stop="29489"/>
              <exon start="27956" stop="27848"/>
              <exon start="27763" stop="27445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29520" stop="29489"/>
              <exon start="27956" stop="27848"/>
              <exon start="27763" stop="27449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284389" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27737" stop="27351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260084" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27649" stop="27449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281195" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTATGCAAAGGTCACGTGTCAACCATCATCTCATTTTGGATAACGCATTTCTTCTTCTTCTTCATCAGTCCCACACTACTGTACCGAGCAACAAAGCAACTGTGATTCTCCTACAAAGTTCCAATCTTTATCAAGAACCCACAAAATTCATCAACCCATTTGAAGTGTTTTACTCCTTAAATCGATAAATTGACTCAAAAATCTCCAGTTACTACTGTTCCTGCAATATACAACAATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAG : TTAACACCTGCTGTAAAGGACTATGTGGAAGAGAAGTTGGGTAAGGCAGTTCAAAAGCACAGCCATCTAGCCAGGGAAGTGGATGTTAGGCTGTCTGTTCGAGGTGGAGAGCTTGGAAAAGGCCCAAAAATTCGAAGATGTGAA : GTTACTCTATTTACGAAAAAGCATGGAGTGATTCGTGCAGAGGAAGACGGTGAGTCAATTTATGGAAGTATAGATATGGTATCATCAATTATACAGAGAAAGTTGCGGAAAATTAAGGAGAAGGATTCAGACCGTGGTCGCCACATGAAGGGCTTCGATAGGCTGAAAGTCAGGGACCCAGAGGCGCTGTTAGTTCAAGAGGATCTTGAAACACTTTCCCAAGAGGAAGAAGTTGAAGATGACAAGAGTGATGGCTTTGTTACTGAG : GTTGTTCGTAAGAAGTCCTTTGACATGCCACCTTTAAGTGTCAATGAAGCAATTGAACAGCTGGAAAATGTCGACCATGACTTCTATGGTTTCCGGAATGAGGAAACTG : GTGAGATTAACATCGTTTACAGACGAAAAGAAGGGGGTTATGGACTTATTATTCCAAAGGAAGATGGTAAAACAGAGAAGTTAGAGCCCTTGGAGGTTGAACCAGAGAAAGAACCGTCGATAGCAGAATAAATCGATATGGTAAAAGAGTTATTAGTTAGTCACTGAGTACATTTGCTTAGGCATAATGTTCACTCCTTGAGAGTCACAAGAAACAGTTTTATGAATTGAGAATATATTGCCAAAAAAGCTTCTGTATGAAATGAGTTCTGTAAAGTTTGTAACTAAAACTTGACAAGGAAAAATGCAGCTTTTCATTTCCTTCTCTATTGTTGTTGTAATATATTAACTACTGCATATTTCAGATTACAAAATCTTTATCTAATAACAAACCTGAAAAAAGGGTCTACTAAC</gDNA_template>
            <first_frame> K  L  C  K  G  H  V  S  T  I  I  S  F  W  I  T  H  F  F  F  F  F  I  S  P  T  L  L  Y  R  A  T  K  Q  L  *  F  S  Y  K  V  P  I  F  I  K  N  P  Q  N  S  S  T  H  L  K  C  F  T  P  *  I  D  K  L  T  Q  K  S  P  V  T  T  V  P  A  I  Y  N  N  G  D  S  F  P  F  P  F  R  G  N  N  F  S  L  S  P  *  L  P  K  W  F  L  I  L  F  F  F  L  S  R  Y  C  F  S  S  F  V  T  D  I  V  I  Y  Q  F  T  I  F  K  F  S  F  Q  D  E  *  N  *  C  S  C  Q  E  *  G  D  K  I  L  W  G  P  D  V  L  G  W  S  T  F  F  C  *  T  H  S  S  R  E  K  S  *   : V  N  T  C  C  K  G  L  C  G  R  E  V  G  *  G  S  S  K  A  Q  P  S  S  Q  G  S  G  C  *  A  V  C  S  R  W  R  A  W  K  R  P  K  N  S  K  M  *   : S  Y  S  I  Y  E  K  A  W  S  D  S  C  R  G  R  R  *  V  N  L  W  K  Y  R  Y  G  I  I  N  Y  T  E  K  V  A  E  N  *  G  E  G  F  R  P  W  S  P  H  E  G  L  R  *  A  E  S  Q  G  P  R  G  A  V  S  S  R  G  S  *  N  T  F  P  R  G  R  S  *  R  *  Q  E  *  W  L  C  Y  *   : G  C  S  *  E  V  L  *  H  A  T  F  K  C  Q  *  S  N  *  T  A  G  K  C  R  P  *  L  L  W  F  P  E  *  G  N  W :   *  D  *  H  R  L  Q  T  K  R  R  G  L  W  T  Y  Y  S  K  G  R  W  *  N  R  E  V  R  A  L  G  G  *  T  R  E  R  T  V  D  S  R  I  N  R  Y  G  K  R  V  I  S  *  S  L  S  T  F  A  *  A  *  C  S  L  L  E  S  H  K  K  Q  F  Y  E  L  R  I  Y  C  Q  K  S  F  C  M  K  *  V  L  *  S  L  *  L  K  L  D  K  E  K  C  S  F  S  F  P  S  L  L  L  L  *  Y  I  N  Y  C  I  F  Q  I  T  K  S  L  S  N  N  K  P  E  K  R  V  Y  *  </first_frame>
            <second_frame>  N  Y  A  K  V  T  C  Q  P  S  S  H  F  G  *  R  I  S  S  S  S  S  S  V  P  H  Y  C  T  E  Q  Q  S  N  C  D  S  P  T  K  F  Q  S  L  S  R  T  H  K  I  H  Q  P  I  *  S  V  L  L  L  K  S  I  N  *  L  K  N  L  Q  L  L  L  F  L  Q  Y  T  T  M  A  T  L  S  L  S  P  S  V  G  T  T  F  H  S  L  H  S  Y  P  N  G  S  S  S  Y  S  S  S  C  P  A  T  A  S  P  A  L  S  L  T  L  S  S  T  N  S  R  F  L  N  S  A  F  K  M  N  E  I  N  V  P  V  R  N  R  V  T  K  S  F  G  V  R  M  S  W  D  G  P  L  S  S  V  K  L  I  L  Q  G  K  N  L  E  :  L  T  P  A  V  K  D  Y  V  E  E  K  L  G  K  A  V  Q  K  H  S  H  L  A  R  E  V  D  V  R  L  S  V  R  G  G  E  L  G  K  G  P  K  I  R  R  C  E  :  V  T  L  F  T  K  K  H  G  V  I  R  A  E  E  D  G  E  S  I  Y  G  S  I  D  M  V  S  S  I  I  Q  R  K  L  R  K  I  K  E  K  D  S  D  R  G  R  H  M  K  G  F  D  R  L  K  V  R  D  P  E  A  L  L  V  Q  E  D  L  E  T  L  S  Q  E  E  E  V  E  D  D  K  S  D  G  F  V  T  E  :  V  V  R  K  K  S  F  D  M  P  P  L  S  V  N  E  A  I  E  Q  L  E  N  V  D  H  D  F  Y  G  F  R  N  E  E  T   : G  E  I  N  I  V  Y  R  R  K  E  G  G  Y  G  L  I  I  P  K  E  D  G  K  T  E  K  L  E  P  L  E  V  E  P  E  K  E  P  S  I  A  E  *  I  D  M  V  K  E  L  L  V  S  H  *  V  H  L  L  R  H  N  V  H  S  L  R  V  T  R  N  S  F  M  N  *  E  Y  I  A  K  K  A  S  V  *  N  E  F  C  K  V  C  N  *  N  L  T  R  K  N  A  A  F  H  F  L  L  Y  C  C  C  N  I  L  T  T  A  Y  F  R  L  Q  N  L  Y  L  I  T  N  L  K  K  G  S  T  N </second_frame>
            <third_frame>   I  M  Q  R  S  R  V  N  H  H  L  I  L  D  N  A  F  L  L  L  L  H  Q  S  H  T  T  V  P  S  N  K  A  T  V  I  L  L  Q  S  S  N  L  Y  Q  E  P  T  K  F  I  N  P  F  E  V  F  Y  S  L  N  R  *  I  D  S  K  I  S  S  Y  Y  C  S  C  N  I  Q  Q  W  R  L  F  P  F  P  L  P  W  E  Q  L  F  T  L  S  I  A  T  Q  M  V  P  H  P  I  L  L  L  V  P  L  L  L  L  Q  L  C  H  *  H  C  H  L  P  I  H  D  F  *  I  Q  L  S  R  *  M  K  L  M  F  L  S  G  I  G  *  Q  N  P  L  G  S  G  C  L  G  M  V  H  F  L  L  L  N  S  F  F  K  G  K  I  L  S :   *  H  L  L  *  R  T  M  W  K  R  S  W  V  R  Q  F  K  S  T  A  I  *  P  G  K  W  M  L  G  C  L  F  E  V  E  S  L  E  K  A  Q  K  F  E  D  V  K :   L  L  Y  L  R  K  S  M  E  *  F  V  Q  R  K  T  V  S  Q  F  M  E  V  *  I  W  Y  H  Q  L  Y  R  E  S  C  G  K  L  R  R  R  I  Q  T  V  V  A  T  *  R  A  S  I  G  *  K  S  G  T  Q  R  R  C  *  F  K  R  I  L  K  H  F  P  K  R  K  K  L  K  M  T  R  V  M  A  L  L  L  R :   L  F  V  R  S  P  L  T  C  H  L  *  V  S  M  K  Q  L  N  S  W  K  M  S  T  M  T  S  M  V  S  G  M  R  K  L  :  V  R  L  T  S  F  T  D  E  K  K  G  V  M  D  L  L  F  Q  R  K  M  V  K  Q  R  S  *  S  P  W  R  L  N  Q  R  K  N  R  R  *  Q  N  K  S  I  W  *  K  S  Y  *  L  V  T  E  Y  I  C  L  G  I  M  F  T  P  *  E  S  Q  E  T  V  L  *  I  E  N  I  L  P  K  K  L  L  Y  E  M  S  S  V  K  F  V  T  K  T  *  Q  G  K  M  Q  L  F  I  S  F  S  I  V  V  V  I  Y  *  L  L  H  I  S  D  Y  K  I  F  I  *  *  Q  T  *  K  K  G  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31038" stop="30712"/>
                    <exon start="29991" stop="29848"/>
                    <exon start="29755" stop="29489"/>
                    <exon start="27956" stop="27848"/>
                    <exon start="27763" stop="27633"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>975</number_coding_nucleotides>
                  <number_encoded_amino_acids>325</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKNLQLLLFLQYTTMATLSLSPSVGTTFHSLHSYPNGSSSYSSSCPATASPALSLTLSSTNSRFLNSAFKMNEINVPVRNRVTKSFGVRMSWDGPLSSVKLILQGKNLELTPAVKDYVEEKLGKAVQKHSHLAREVDVRLSVRGGELGKGPKIRRCEVTLFTKKHGVIRAEEDGESIYGSIDMVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVRDPEALLVQEDLETLSQEEEVEDDKSDGFVTEVVRKKSFDMPPLSVNEAIEQLENVDHDFYGFRNEETGEINIVYRRKEGGYGLIIPKEDGKTEKLEPLEVEPEKEPSIAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="31135" e_stop="30091"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31135" e_stop="30091" e_length="1045"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31135" stop="30712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31061" stop="30809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30914" stop="30091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736115" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACTGTGATTCTCCTACAAAGTTCCAATCTTTATCAAGAACCCACAAAATTCATCAACCCATTTGAAGTGTTTTACTCCTTAAATCGATAAATTGACTCAAAAATCTCCAGTTACTACTGTTCCTGCAATATACAACAATGGCGACTCTTTCCCTTTCCCCTTCCGTGGGAACAACTTTTCACTCTCTCCATAGCTACCCAAATGGTTCCTCATCCTATTCTTCTTCTTGTCCCGCTACTGCTTCTCCAGCTTTGTCACTGACATTGTCATCTACCAATTCACGATTTTTAAATTCAGCTTTCAAGATGAATGAAATTAATGTTCCTGTCAGGAATAGGGTGACAAAATCCTTTGGGGTCCGGATGTCTTGGGATGGTCCACTTTCTTCTGTTAAACTCATTCTTCAAGGGAAAAATCTTGAGGTCACACTCCTTAGGCCTTACAATATTATTATTTCCCTGCATTTTTTGCTTATATCTGCTAAAGTGTACTTCATAGGAACTTGGGTTTTCTGAAAAATAGTTAATTGATTTTGAATATACTCCTCTATCAAATGACTGCTCAGGTGCTATAAGGTCTATCAGAAACAACCTGTGTGTCCTGAAAAAGTAGGACTAAGATCTGCGTACTTAATAGTACCTTTTAGCATCTTATGTCTCTGTATCAAAATCTAATTTTGATGGGATCTACCATTTCAGTGAAAAATAGGGCACAATGAAAGAAAAATCTGTTAATGTGATAGCAATTAGTTGGATTTATAGTTTAGTCATGTTCTGTGTTTCTATTGGTTCTCTAATTTGTCAGAGAAGAAAATATAGAGAGCTTCTAGTATCTTTATTACTCATTGAGTCATTTCTAATTTTGTTTTGCTTAATGTTAGTTTGAGATGATCTTAAATGAAGGGACATGGTCAATGAGGATTCATATAGCTGAGCAAACTTATTGCGATTGTGTTGTAGCTGTTGTAGAAAAAATACGTATGAATTGACATCAAAAAAATTAGCTTGTTGGACTTTAACCATTTCAATAGCTAGTTCACAATG</gDNA_template>
            <first_frame> Q  L  *  F  S  Y  K  V  P  I  F  I  K  N  P  Q  N  S  S  T  H  L  K  C  F  T  P  *  I  D  K  L  T  Q  K  S  P  V  T  T  V  P  A  I  Y  N  N  G  D  S  F  P  F  P  F  R  G  N  N  F  S  L  S  P  *  L  P  K  W  F  L  I  L  F  F  F  L  S  R  Y  C  F  S  S  F  V  T  D  I  V  I  Y  Q  F  T  I  F  K  F  S  F  Q  D  E  *  N  *  C  S  C  Q  E  *  G  D  K  I  L  W  G  P  D  V  L  G  W  S  T  F  F  C  *  T  H  S  S  R  E  K  S  *  G  H  T  P  *  A  L  Q  Y  Y  Y  F  P  A  F  F  A  Y  I  C  *  S  V  L  H  R  N  L  G  F  L  K  N  S  *  L  I  L  N  I  L  L  Y  Q  M  T  A  Q  V  L  *  G  L  S  E  T  T  C  V  S  *  K  S  R  T  K  I  C  V  L  N  S  T  F  *  H  L  M  S  L  Y  Q  N  L  I  L  M  G  S  T  I  S  V  K  N  R  A  Q  *  K  K  N  L  L  M  *  *  Q  L  V  G  F  I  V  *  S  C  S  V  F  L  L  V  L  *  F  V  R  E  E  N  I  E  S  F  *  Y  L  Y  Y  S  L  S  H  F  *  F  C  F  A  *  C  *  F  E  M  I  L  N  E  G  T  W  S  M  R  I  H  I  A  E  Q  T  Y  C  D  C  V  V  A  V  V  E  K  I  R  M  N  *  H  Q  K  N  *  L  V  G  L  *  P  F  Q  *  L  V  H  N  </first_frame>
            <second_frame>  N  C  D  S  P  T  K  F  Q  S  L  S  R  T  H  K  I  H  Q  P  I  *  S  V  L  L  L  K  S  I  N  *  L  K  N  L  Q  L  L  L  F  L  Q  Y  T  T  M  A  T  L  S  L  S  P  S  V  G  T  T  F  H  S  L  H  S  Y  P  N  G  S  S  S  Y  S  S  S  C  P  A  T  A  S  P  A  L  S  L  T  L  S  S  T  N  S  R  F  L  N  S  A  F  K  M  N  E  I  N  V  P  V  R  N  R  V  T  K  S  F  G  V  R  M  S  W  D  G  P  L  S  S  V  K  L  I  L  Q  G  K  N  L  E  V  T  L  L  R  P  Y  N  I  I  I  S  L  H  F  L  L  I  S  A  K  V  Y  F  I  G  T  W  V  F  *  K  I  V  N  *  F  *  I  Y  S  S  I  K  *  L  L  R  C  Y  K  V  Y  Q  K  Q  P  V  C  P  E  K  V  G  L  R  S  A  Y  L  I  V  P  F  S  I  L  C  L  C  I  K  I  *  F  *  W  D  L  P  F  Q  *  K  I  G  H  N  E  R  K  I  C  *  C  D  S  N  *  L  D  L  *  F  S  H  V  L  C  F  Y  W  F  S  N  L  S  E  K  K  I  *  R  A  S  S  I  F  I  T  H  *  V  I  S  N  F  V  L  L  N  V  S  L  R  *  S  *  M  K  G  H  G  Q  *  G  F  I  *  L  S  K  L  I  A  I  V  L  *  L  L  *  K  K  Y  V  *  I  D  I  K  K  I  S  L  L  D  F  N  H  F  N  S  *  F  T  M </second_frame>
            <third_frame>   T  V  I  L  L  Q  S  S  N  L  Y  Q  E  P  T  K  F  I  N  P  F  E  V  F  Y  S  L  N  R  *  I  D  S  K  I  S  S  Y  Y  C  S  C  N  I  Q  Q  W  R  L  F  P  F  P  L  P  W  E  Q  L  F  T  L  S  I  A  T  Q  M  V  P  H  P  I  L  L  L  V  P  L  L  L  L  Q  L  C  H  *  H  C  H  L  P  I  H  D  F  *  I  Q  L  S  R  *  M  K  L  M  F  L  S  G  I  G  *  Q  N  P  L  G  S  G  C  L  G  M  V  H  F  L  L  L  N  S  F  F  K  G  K  I  L  R  S  H  S  L  G  L  T  I  L  L  F  P  C  I  F  C  L  Y  L  L  K  C  T  S  *  E  L  G  F  S  E  K  *  L  I  D  F  E  Y  T  P  L  S  N  D  C  S  G  A  I  R  S  I  R  N  N  L  C  V  L  K  K  *  D  *  D  L  R  T  *  *  Y  L  L  A  S  Y  V  S  V  S  K  S  N  F  D  G  I  Y  H  F  S  E  K  *  G  T  M  K  E  K  S  V  N  V  I  A  I  S  W  I  Y  S  L  V  M  F  C  V  S  I  G  S  L  I  C  Q  R  R  K  Y  R  E  L  L  V  S  L  L  L  I  E  S  F  L  I  L  F  C  L  M  L  V  *  D  D  L  K  *  R  D  M  V  N  E  D  S  Y  S  *  A  N  L  L  R  L  C  C  S  C  C  R  K  N  T  Y  E  L  T  S  K  K  L  A  C  W  T  L  T  I  S  I  A  S  S  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31038" stop="30619"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKNLQLLLFLQYTTMATLSLSPSVGTTFHSLHSYPNGSSSYSSSCPATASPALSLTLSSTNSRFLNSAFKMNEINVPVRNRVTKSFGVRMSWDGPLSSVKLILQGKNLEVTLLRPYNIIISLHFLLISAKVYFIGTWVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="30904" PGL_stop="31227"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30904" e_stop="31227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="30904" e_stop="31227" e_length="324"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30904" stop="31227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281397" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAGAAGAAGAATAGGATGAGGAACCATTTGGGTAGCTATGGAGAGAGTGAAAAGTTGTTCCCACGGAAGGGGAAAGGGAAAGAGTCGCCATTGTTGTATATTGCAGGAACAGTAGTAACTGGAGATTTTTGAGTCAATTTATCGATTTAAGGAGTAAAACACTTCAAATGGGTTGATGAATTTTGTGGGTTCTTGATAAAGATTGGAACTTTGTAGGAGAATCACAGTTGCTTTGTTGCTCGGTACAGTAGTGTGGGACTGATGAAGAAGAAGAAGAAATGCGTTATCCAAAATGAGATGATGGTTGACACGTGACCTTTGC</gDNA_template>
            <first_frame> T  R  R  R  I  G  *  G  T  I  W  V  A  M  E  R  V  K  S  C  S  H  G  R  G  K  G  K  S  R  H  C  C  I  L  Q  E  Q  *  *  L  E  I  F  E  S  I  Y  R  F  K  E  *  N  T  S  N  G  L  M  N  F  V  G  S  *  *  R  L  E  L  C  R  R  I  T  V  A  L  L  L  G  T  V  V  W  D  *  *  R  R  R  R  N  A  L  S  K  M  R  *  W  L  T  R  D  L  C </first_frame>
            <second_frame>  Q  E  E  E  *  D  E  E  P  F  G  *  L  W  R  E  *  K  V  V  P  T  E  G  E  R  E  R  V  A  I  V  V  Y  C  R  N  S  S  N  W  R  F  L  S  Q  F  I  D  L  R  S  K  T  L  Q  M  G  *  *  I  L  W  V  L  D  K  D  W  N  F  V  G  E  S  Q  L  L  C  C  S  V  Q  *  C  G  T  D  E  E  E  E  E  M  R  Y  P  K  *  D  D  G  *  H  V  T  F   </second_frame>
            <third_frame>   K  K  K  N  R  M  R  N  H  L  G  S  Y  G  E  S  E  K  L  F  P  R  K  G  K  G  K  E  S  P  L  L  Y  I  A  G  T  V  V  T  G  D  F  *  V  N  L  S  I  *  G  V  K  H  F  K  W  V  D  E  F  C  G  F  L  I  K  I  G  T  L  *  E  N  H  S  C  F  V  A  R  Y  S  S  V  G  L  M  K  K  K  K  K  C  V  I  Q  N  E  M  M  V  D  T  *  P  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0304I22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="34623" PGL_stop="33816"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34623" e_stop="33816"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="34623" e_stop="33816" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34623" stop="33816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGTTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAAGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGACGCTCGGAAGATTTTAGGGATAGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGTTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTACATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  V  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  K  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  T  L  G  R  F  *  G  *  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  V  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  T  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  R  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  R  R  S  E  D  F  R  D  R  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  H  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  K  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  D  A  R  K  I  L  G  I  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34621" stop="33818"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLKDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGDARKILGIEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="35282" PGL_stop="34634"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35282" e_stop="34634"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="35282" e_stop="34634" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35282" stop="34634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35281" stop="34897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGAGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGTATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAAGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  R  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  Y  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  *  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  K  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  E  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  V  Y  H  Q  Q  K  E  S  S  I  K  P  R  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35281" stop="34925"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34924" stop="34634"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKAKVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34995" stop="34726"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLILKNGLPLWEMRWSPYTRIRHEIWSYSLRGERLLLANGFSRRRKVYHQQKESSIKPRLLPEVSTKEREWTTMRSSHQWSDILPSECY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="39387" PGL_stop="41022"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39387" e_stop="39624"/>
            <exon e_start="39717" e_stop="39752"/>
            <exon e_start="39822" e_stop="39992"/>
            <exon e_start="40643" e_stop="41022"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.806" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.850" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39387" e_stop="39624" e_length="238"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.979">
            <gDNA_intron_boundary i_start="39625" i_stop="39716" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39717" e_stop="39752" e_length="36"/>
          </exon>
          <intron i_serial="2" don_prob="0.806" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39753" i_stop="39821" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39822" e_stop="39992" e_length="171"/>
          </exon>
          <intron i_serial="3" don_prob="0.968" acc_prob="0.850">
            <gDNA_intron_boundary i_start="39993" i_stop="40642" i_length="650"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="40643" e_stop="41022" e_length="380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39387" stop="39624"/>
              <exon start="39717" stop="39752"/>
              <exon start="39822" stop="39992"/>
              <exon start="40643" stop="40781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39387" stop="39624"/>
              <exon start="39717" stop="39752"/>
              <exon start="39822" stop="39860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39462" stop="39624"/>
              <exon start="39717" stop="39752"/>
              <exon start="39822" stop="39992"/>
              <exon start="40643" stop="40976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39976" stop="39992"/>
              <exon start="40643" stop="41022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302018" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAAAAGAGAGGTGGAATGGCTGGTTCTGCTACTGCTCATGGCTTCCCAACTAGCTTCTTGCTTTCTCCTCGCAGCACGGGACACTTTACTTATTTGCTATCATCACTACAAATTAAACCTAAAAGTAGCAATTTCAACTTGCTCAACACTTGCCCTTTATCGCATTTATGTTCATCCTCGGCTAATGGATCTATCACGGATGATAATTTTTTCCAACAAAACAAAAACTTAGAT : AGCCAAGAGAGCAAAGGGTTTTGGAAGAAATGGAAG : GAGAACTCAGCGGAAATGAGTGCGAAGGTAGCAAAGCTAGGGCTTGCGGCAGTTCTTGCTTATGGCATTATTGATGGTGTCACATACACTAGTTTCTTTGTGCTTGCATTTATGGGCTATGAGAAGACCACCGGCAATAATCCTGCTGCAAATCTCCAATCTTTGTTGGGG : ATTATAATCGCAATGTGGACGGGAAATAATGTGACCAGGCCATTTAGGGTTGCAGGAGCAGCTGCTCTGGCACCTGCCATTGACAAGGGACTAAAGAGAATACAGAGATACTTAAACTTTCCAAGTCTTGTATATGCTTTTGCTTTAGTGGTGACTATAGTTGCTGGGACATGTTTCACCATTATTGGTTTACTCATCCTTTCAAGATGGGGAAAGTGAACGATTCCACCCATAAGTTAGCTGGATATTTGTTGTAATCTGTTGAGTGTTACTTGTATCATTGAGATAGTCCTCTGACTATATATTTTTCCACTTATATGGTCTCGTAAAAGTAGTTGGAAACGTGTTTTTAGTTAGTACACAAATTTCTAAAGTTCAGA</gDNA_template>
            <first_frame> K  K  K  E  R  W  N  G  W  F  C  Y  C  S  W  L  P  N  *  L  L  A  F  S  S  Q  H  G  T  L  Y  L  F  A  I  I  T  T  N  *  T  *  K  *  Q  F  Q  L  A  Q  H  L  P  F  I  A  F  M  F  I  L  G  *  W  I  Y  H  G  *  *  F  F  P  T  K  Q  K  L  R   : *  P  R  E  Q  R  V  L  E  E  M  E   : G  E  L  S  G  N  E  C  E  G  S  K  A  R  A  C  G  S  S  C  L  W  H  Y  *  W  C  H  I  H  *  F  L  C  A  C  I  Y  G  L  *  E  D  H  R  Q  *  S  C  C  K  S  P  I  F  V  G   : D  Y  N  R  N  V  D  G  K  *  C  D  Q  A  I  *  G  C  R  S  S  C  S  G  T  C  H  *  Q  G  T  K  E  N  T  E  I  L  K  L  S  K  S  C  I  C  F  C  F  S  G  D  Y  S  C  W  D  M  F  H  H  Y  W  F  T  H  P  F  K  M  G  K  V  N  D  S  T  H  K  L  A  G  Y  L  L  *  S  V  E  C  Y  L  Y  H  *  D  S  P  L  T  I  Y  F  S  T  Y  M  V  S  *  K  *  L  E  T  C  F  *  L  V  H  K  F  L  K  F  R </first_frame>
            <second_frame>  K  K  K  R  G  G  M  A  G  S  A  T  A  H  G  F  P  T  S  F  L  L  S  P  R  S  T  G  H  F  T  Y  L  L  S  S  L  Q  I  K  P  K  S  S  N  F  N  L  L  N  T  C  P  L  S  H  L  C  S  S  S  A  N  G  S  I  T  D  D  N  F  F  Q  Q  N  K  N  L  D  :  S  Q  E  S  K  G  F  W  K  K  W  K  :  E  N  S  A  E  M  S  A  K  V  A  K  L  G  L  A  A  V  L  A  Y  G  I  I  D  G  V  T  Y  T  S  F  F  V  L  A  F  M  G  Y  E  K  T  T  G  N  N  P  A  A  N  L  Q  S  L  L  G  :  I  I  I  A  M  W  T  G  N  N  V  T  R  P  F  R  V  A  G  A  A  A  L  A  P  A  I  D  K  G  L  K  R  I  Q  R  Y  L  N  F  P  S  L  V  Y  A  F  A  L  V  V  T  I  V  A  G  T  C  F  T  I  I  G  L  L  I  L  S  R  W  G  K  *  T  I  P  P  I  S  *  L  D  I  C  C  N  L  L  S  V  T  C  I  I  E  I  V  L  *  L  Y  I  F  P  L  I  W  S  R  K  S  S  W  K  R  V  F  S  *  Y  T  N  F  *  S  S   </second_frame>
            <third_frame>   K  K  R  E  V  E  W  L  V  L  L  L  L  M  A  S  Q  L  A  S  C  F  L  L  A  A  R  D  T  L  L  I  C  Y  H  H  Y  K  L  N  L  K  V  A  I  S  T  C  S  T  L  A  L  Y  R  I  Y  V  H  P  R  L  M  D  L  S  R  M  I  I  F  S  N  K  T  K  T  *  I :   A  K  R  A  K  G  F  G  R  N  G  R :   R  T  Q  R  K  *  V  R  R  *  Q  S  *  G  L  R  Q  F  L  L  M  A  L  L  M  V  S  H  T  L  V  S  L  C  L  H  L  W  A  M  R  R  P  P  A  I  I  L  L  Q  I  S  N  L  C  W  G :   L  *  S  Q  C  G  R  E  I  M  *  P  G  H  L  G  L  Q  E  Q  L  L  W  H  L  P  L  T  R  D  *  R  E  Y  R  D  T  *  T  F  Q  V  L  Y  M  L  L  L  *  W  *  L  *  L  L  G  H  V  S  P  L  L  V  Y  S  S  F  Q  D  G  E  S  E  R  F  H  P  *  V  S  W  I  F  V  V  I  C  *  V  L  L  V  S  L  R  *  S  S  D  Y  I  F  F  H  L  Y  G  L  V  K  V  V  G  N  V  F  L  V  S  T  Q  I  S  K  V  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39388" stop="39624"/>
                    <exon start="39717" stop="39752"/>
                    <exon start="39822" stop="39992"/>
                    <exon start="40643" stop="40861"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKRGGMAGSATAHGFPTSFLLSPRSTGHFTYLLSSLQIKPKSSNFNLLNTCPLSHLCSSSANGSITDDNFFQQNKNLDSQESKGFWKKWKENSAEMSAKVAKLGLAAVLAYGIIDGVTYTSFFVLAFMGYEKTTGNNPAANLQSLLGIIIAMWTGNNVTRPFRVAGAAALAPAIDKGLKRIQRYLNFPSLVYAFALVVTIVAGTCFTIIGLLILSRWGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="39387" e_stop="39624"/>
            <exon e_start="39717" e_stop="39752"/>
            <exon e_start="39822" e_stop="40170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.806" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39387" e_stop="39624" e_length="238"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.979">
            <gDNA_intron_boundary i_start="39625" i_stop="39716" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39717" e_stop="39752" e_length="36"/>
          </exon>
          <intron i_serial="2" don_prob="0.806" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39753" i_stop="39821" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39822" e_stop="40170" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39387" stop="39624"/>
              <exon start="39717" stop="39752"/>
              <exon start="39822" stop="39860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39403" stop="39624"/>
              <exon start="39717" stop="39752"/>
              <exon start="39822" stop="40170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276290" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAAAAGAGAGGTGGAATGGCTGGTTCTGCTACTGCTCATGGCTTCCCAACTAGCTTCTTGCTTTCTCCTCGCAGCACGGGACACTTTACTTATTTGCTATCATCACTACAAATTAAACCTAAAAGTAGCAATTTCAACTTGCTCAACACTTGCCCTTTATCGCATTTATGTTCATCCTCGGCTAATGGATCTATCACGGATGATAATTTTTTCCAACAAAACAAAAACTTAGAT : AGCCAAGAGAGCAAAGGGTTTTGGAAGAAATGGAAG : GAGAACTCAGCGGAAATGAGTGCGAAGGTAGCAAAGCTAGGGCTTGCGGCAGTTCTTGCTTATGGCATTATTGATGGTGTCACATACACTAGTTTCTTTGTGCTTGCATTTATGGGCTATGAGAAGACCACCGGCAATAATCCTGCTGCAAATCTCCAATCTTTGTTGGGGGTAAGTAGTAATTCTTAAATAGGTATGAAATATGCAATTGATAAAAGGGGGGAATGGTTTTTGCTTTGATTTAGAGAAATAGAGACTTGATTTCCTAGAATTACTTCTCTTTTGAGCCAAGGGTCCTCTCTACCTCCACAACGATAGGAGTAAGGTAAGGTTCGCATACATCTTACTC</gDNA_template>
            <first_frame> K  K  K  E  R  W  N  G  W  F  C  Y  C  S  W  L  P  N  *  L  L  A  F  S  S  Q  H  G  T  L  Y  L  F  A  I  I  T  T  N  *  T  *  K  *  Q  F  Q  L  A  Q  H  L  P  F  I  A  F  M  F  I  L  G  *  W  I  Y  H  G  *  *  F  F  P  T  K  Q  K  L  R   : *  P  R  E  Q  R  V  L  E  E  M  E   : G  E  L  S  G  N  E  C  E  G  S  K  A  R  A  C  G  S  S  C  L  W  H  Y  *  W  C  H  I  H  *  F  L  C  A  C  I  Y  G  L  *  E  D  H  R  Q  *  S  C  C  K  S  P  I  F  V  G  G  K  *  *  F  L  N  R  Y  E  I  C  N  *  *  K  G  G  M  V  F  A  L  I  *  R  N  R  D  L  I  S  *  N  Y  F  S  F  E  P  R  V  L  S  T  S  T  T  I  G  V  R  *  G  S  H  T  S  Y   </first_frame>
            <second_frame>  K  K  K  R  G  G  M  A  G  S  A  T  A  H  G  F  P  T  S  F  L  L  S  P  R  S  T  G  H  F  T  Y  L  L  S  S  L  Q  I  K  P  K  S  S  N  F  N  L  L  N  T  C  P  L  S  H  L  C  S  S  S  A  N  G  S  I  T  D  D  N  F  F  Q  Q  N  K  N  L  D  :  S  Q  E  S  K  G  F  W  K  K  W  K  :  E  N  S  A  E  M  S  A  K  V  A  K  L  G  L  A  A  V  L  A  Y  G  I  I  D  G  V  T  Y  T  S  F  F  V  L  A  F  M  G  Y  E  K  T  T  G  N  N  P  A  A  N  L  Q  S  L  L  G  V  S  S  N  S  *  I  G  M  K  Y  A  I  D  K  R  G  E  W  F  L  L  *  F  R  E  I  E  T  *  F  P  R  I  T  S  L  L  S  Q  G  S  S  L  P  P  Q  R  *  E  *  G  K  V  R  I  H  L  T  </second_frame>
            <third_frame>   K  K  R  E  V  E  W  L  V  L  L  L  L  M  A  S  Q  L  A  S  C  F  L  L  A  A  R  D  T  L  L  I  C  Y  H  H  Y  K  L  N  L  K  V  A  I  S  T  C  S  T  L  A  L  Y  R  I  Y  V  H  P  R  L  M  D  L  S  R  M  I  I  F  S  N  K  T  K  T  *  I :   A  K  R  A  K  G  F  G  R  N  G  R :   R  T  Q  R  K  *  V  R  R  *  Q  S  *  G  L  R  Q  F  L  L  M  A  L  L  M  V  S  H  T  L  V  S  L  C  L  H  L  W  A  M  R  R  P  P  A  I  I  L  L  Q  I  S  N  L  C  W  G  *  V  V  I  L  K  *  V  *  N  M  Q  L  I  K  G  G  N  G  F  C  F  D  L  E  K  *  R  L  D  F  L  E  L  L  L  F  *  A  K  G  P  L  Y  L  H  N  D  R  S  K  V  R  F  A  Y  I  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39388" stop="39624"/>
                    <exon start="39717" stop="39752"/>
                    <exon start="39822" stop="40010"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKRGGMAGSATAHGFPTSFLLSPRSTGHFTYLLSSLQIKPKSSNFNLLNTCPLSHLCSSSANGSITDDNFFQQNKNLDSQESKGFWKKWKENSAEMSAKVAKLGLAAVLAYGIIDGVTYTSFFVLAFMGYEKTTGNNPAANLQSLLGVSSNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="39717" e_stop="40584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="39717" e_stop="40584" e_length="868"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39717" stop="40584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738189" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCCAAGAGAGCAAAGGGTTTTGGAAGAAATGGAAGGTTTGGTAAACCCATTATTTTTTTTAGGATGATTTGGTGAAAACTGCTTTGACGTTGTGTTTTAATCAGGAGAACTCAGCGGAAATGAGTGCGAAGGTAGCAAAGCTAGGGCTTGCGGCAGTTCTTGCTTATGGCATTATTGATGGTGTCACATACACTAGTTTCTTTGTGCTTGCATTTATGGGCTATGAGAAGACCACCGGCAATAATCCTGCTGCAAATCTCCAATCTTTGTTGGGGGTAAGTAGTAATTCTTAAATAGGTATGAAATATGCAATTGATAAAAGGGGGGAATGGTTTTTGCTTTGATTTAGAGAAATAGAGACTTGATTTCCTAGAATTACTTCTCTTTTGAGCCAAGGGTCCTCTCTACCTCCACAACGATAGGAGTAAGGTAAGGTTCGCATACATCTTACTCTCCCCAAACCTAACTTGCGTTGTTGTAGACTTGATTTCCTGAACTTTTTAGTGCAAAGGTAAAAGGTACCATATTATGGAAATATGTGGTATTTACATTTAGGATACTGGATGAATGCTTATCATAGCATTTTCATTTGTCGTAGAATATCCACTTCAGTATTTACATACCGAAGTTGTCTTTTCCATTTCTTCAGATCAAAGTTAAGACCATCTTTTCCTTTTCACCATATCGTGAGTTCCTTTATCTTAGATCTAATTTAATGTCATTCTTCTCCTCTTTACCAGAAAGAGCATCCAGAGTTAACAATAATACTAATGAGAATCATTTAGCAACTATAGGGAACTCGGAATTTTCATGGTGCCTCGTGTCAATCTGCACCTTACTTCCCCATTGGACATGTGCTATTTTAAT</gDNA_template>
            <first_frame> S  Q  E  S  K  G  F  W  K  K  W  K  V  W  *  T  H  Y  F  F  *  D  D  L  V  K  T  A  L  T  L  C  F  N  Q  E  N  S  A  E  M  S  A  K  V  A  K  L  G  L  A  A  V  L  A  Y  G  I  I  D  G  V  T  Y  T  S  F  F  V  L  A  F  M  G  Y  E  K  T  T  G  N  N  P  A  A  N  L  Q  S  L  L  G  V  S  S  N  S  *  I  G  M  K  Y  A  I  D  K  R  G  E  W  F  L  L  *  F  R  E  I  E  T  *  F  P  R  I  T  S  L  L  S  Q  G  S  S  L  P  P  Q  R  *  E  *  G  K  V  R  I  H  L  T  L  P  K  P  N  L  R  C  C  R  L  D  F  L  N  F  L  V  Q  R  *  K  V  P  Y  Y  G  N  M  W  Y  L  H  L  G  Y  W  M  N  A  Y  H  S  I  F  I  C  R  R  I  S  T  S  V  F  T  Y  R  S  C  L  F  H  F  F  R  S  K  L  R  P  S  F  P  F  H  H  I  V  S  S  F  I  L  D  L  I  *  C  H  S  S  P  L  Y  Q  K  E  H  P  E  L  T  I  I  L  M  R  I  I  *  Q  L  *  G  T  R  N  F  H  G  A  S  C  Q  S  A  P  Y  F  P  I  G  H  V  L  F  *  </first_frame>
            <second_frame>  A  K  R  A  K  G  F  G  R  N  G  R  F  G  K  P  I  I  F  F  R  M  I  W  *  K  L  L  *  R  C  V  L  I  R  R  T  Q  R  K  *  V  R  R  *  Q  S  *  G  L  R  Q  F  L  L  M  A  L  L  M  V  S  H  T  L  V  S  L  C  L  H  L  W  A  M  R  R  P  P  A  I  I  L  L  Q  I  S  N  L  C  W  G  *  V  V  I  L  K  *  V  *  N  M  Q  L  I  K  G  G  N  G  F  C  F  D  L  E  K  *  R  L  D  F  L  E  L  L  L  F  *  A  K  G  P  L  Y  L  H  N  D  R  S  K  V  R  F  A  Y  I  L  L  S  P  N  L  T  C  V  V  V  D  L  I  S  *  T  F  *  C  K  G  K  R  Y  H  I  M  E  I  C  G  I  Y  I  *  D  T  G  *  M  L  I  I  A  F  S  F  V  V  E  Y  P  L  Q  Y  L  H  T  E  V  V  F  S  I  S  S  D  Q  S  *  D  H  L  F  L  F  T  I  S  *  V  P  L  S  *  I  *  F  N  V  I  L  L  L  F  T  R  K  S  I  Q  S  *  Q  *  Y  *  *  E  S  F  S  N  Y  R  E  L  G  I  F  M  V  P  R  V  N  L  H  L  T  S  P  L  D  M  C  Y  F  N </second_frame>
            <third_frame>   P  R  E  Q  R  V  L  E  E  M  E  G  L  V  N  P  L  F  F  L  G  *  F  G  E  N  C  F  D  V  V  F  *  S  G  E  L  S  G  N  E  C  E  G  S  K  A  R  A  C  G  S  S  C  L  W  H  Y  *  W  C  H  I  H  *  F  L  C  A  C  I  Y  G  L  *  E  D  H  R  Q  *  S  C  C  K  S  P  I  F  V  G  G  K  *  *  F  L  N  R  Y  E  I  C  N  *  *  K  G  G  M  V  F  A  L  I  *  R  N  R  D  L  I  S  *  N  Y  F  S  F  E  P  R  V  L  S  T  S  T  T  I  G  V  R  *  G  S  H  T  S  Y  S  P  Q  T  *  L  A  L  L  *  T  *  F  P  E  L  F  S  A  K  V  K  G  T  I  L  W  K  Y  V  V  F  T  F  R  I  L  D  E  C  L  S  *  H  F  H  L  S  *  N  I  H  F  S  I  Y  I  P  K  L  S  F  P  F  L  Q  I  K  V  K  T  I  F  S  F  S  P  Y  R  E  F  L  Y  L  R  S  N  L  M  S  F  F  S  S  L  P  E  R  A  S  R  V  N  N  N  T  N  E  N  H  L  A  T  I  G  N  S  E  F  S  W  C  L  V  S  I  C  T  L  L  P  H  W  T  C  A  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40316" stop="40582"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIHFSIYIPKLSFPFLQIKVKTIFSFSPYREFLYLRSNLMSFFSSLPERASRVNNNTNENHLATIGNSEFSWCLVSICTLLPHWTCAIL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39780" stop="40010"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDLVKTALTLCFNQENSAEMSAKVAKLGLAAVLAYGIIDGVTYTSFFVLAFMGYEKTTGNNPAANLQSLLGVSSNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40233" stop="40433"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVPYYGNMWYLHLGYWMNAYHSIFICRRISTSVFTYRSCLFHFFRSKLRPSFPFHHIVSSFILDLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="42197" PGL_stop="44740"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42197" e_stop="42399"/>
            <exon e_start="42863" e_stop="43168"/>
            <exon e_start="43276" e_stop="43641"/>
            <exon e_start="43770" e_stop="44126"/>
            <exon e_start="44205" e_stop="44740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.819" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42197" e_stop="42399" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="42400" i_stop="42862" i_length="463"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42863" e_stop="43168" e_length="306"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="43169" i_stop="43275" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43276" e_stop="43641" e_length="366"/>
          </exon>
          <intron i_serial="3" don_prob="0.929" acc_prob="0.996">
            <gDNA_intron_boundary i_start="43642" i_stop="43769" i_length="128"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43770" e_stop="44126" e_length="357"/>
          </exon>
          <intron i_serial="4" don_prob="0.923" acc_prob="0.819">
            <gDNA_intron_boundary i_start="44127" i_stop="44204" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="0.978">
            <gDNA_exon_boundary e_start="44205" e_stop="44740" e_length="536"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42197" stop="42399"/>
              <exon start="42863" stop="43168"/>
              <exon start="43276" stop="43510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42939" stop="43104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43050" stop="43168"/>
              <exon start="43276" stop="43632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43057" stop="43168"/>
              <exon start="43276" stop="43641"/>
              <exon start="43770" stop="43854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43292" stop="43641"/>
              <exon start="43770" stop="43876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43295" stop="43641"/>
              <exon start="43770" stop="43910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43361" stop="43641"/>
              <exon start="43770" stop="43915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43387" stop="43641"/>
              <exon start="43770" stop="44126"/>
              <exon start="44205" stop="44266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43387" stop="43641"/>
              <exon start="43770" stop="44126"/>
              <exon start="44205" stop="44211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43782" stop="44126"/>
              <exon start="44205" stop="44740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43883" stop="44126"/>
              <exon start="44205" stop="44646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236572" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTGAACCGAGCAACAGAACGAGGATACTGGAAAGCTACTGGTAAAGATAGAAACATAGCTACTAGAAAGGGGGCAAAGATTGGGATGAAGAAGACTTTGGTGTACTACAATGGGCGAGCTCCTGAAGGGAAGAGGACCAATTGGGTGATCCATGAATATCGTGCAACTGACAAGTCATTGGATGGTTCACGCCCTGGACAG : GGAGCCTTTGTGCTTTGTCGTCTCTTTAAGAAGAATGAATTGAAGCAAGCTGAAAATGTCGAAAGTTCACATTTTGATGAAGTTGAACATCTTGTTTCTTCTCCTGCTGTTGGAATATCACCAACCGATGATGGATTATCAGCAGTGGCTCTATCTCCAATCATGGAAAGTGAGAGTAATAAAAGTAACCCACCAAAAACCTCTGGATGCAAAACTCATGACACAAGATTATCTATTGATAGTTGTGGTAATAGTTGCACTGCTGGTGATGGTGAAGATTTGATGGTGGACATAACATCAGGACAA : CCAGATCTCCAGATAGAGGAATTGTTGGGACTCTTTCGCGACCCTTCACCAGAGCCTATTGATTGGTCTCCGTTGCATTCACAGTCGCAGGTGGAGTTTGGATCTTCTATCTCACATGGTACCATGAGCAATGAGATAAACTGTGATCAAAAGGATGTCCAGTGTCAGAATGTAATAAATGATCTCAATACGAATGAGTTTCTAAATTCAATTCTTGTCAGCTCTGATGAGTTTTCATATGAAGATTCTGAAAAGGAATTGAGGTCAATGTGGTTTGCCTCGAACAGTATTAACACTATAACAACGGCACCAGTTACGGATTCTGGAACTTGTAGTGTGTTGAAGTCACAAGTCACACAAGAGCCA : GTTAGGAGAGATATATTTGAACCTGAGCTGCTGTTGGGAAATTGTGGAGAGACTGCATTAATGAGAGAGGTTAATTCTGTTGCAACCTCAGTGGACGAGGTGTTTGCAACACCTTATTTTCGCAATGATCACTCAATGGGGAATGTAGGCACTGATTCTGCTTTTGGAATAACACTAAGGACTCGGCGGACGCAGAATCAACCTGACAACAGCCAGCCCGGATCTGGAATGCAAGGAACTACTGTTAGAAGAATACGTTACCAAGTGAAACTTCAAACCGGAAGAGTAGAGCGTCGCATGCCGACTGATTCTGATCAGGGTGGAGCAAATCATGAAGGACTGTCAGCTGTATCTGAG : AGTGAAAAGTTCTCCAATGAAGATAGTTCTTCTTTGAGTGCTGCTATCTCCAGTGATGTGACACAAGATACCATGTGCAAAGAATTAAAAGGGGATCGTCAAATGGCTGAAGACTTGAGGAGTGCAAATGTGAAAGATACAAATGCTTTAAAGAGAGCAGCATTGTCTTCGTTTTCATTAAGTTTCTACATATCCAAGGTGTTCGCTGTTGCAAGTTTACTCATAGTCTTCTTAGGTGTTTGTGGATTCTTTAAGCTGAGACAGTCTGCATCCAAATTGTAGCTTCTTGTAACTGGCTTAACATGTTTTGTTGATTTTATCTCCTTTTCAAATACTGCAAAGGAGCTAAAGTTGAGAAAACTTAGAAGTTACTACTAGTGTATACTTTATATTATAATTAGCTTGTTTTGTACATTACTAGCACTATATTGTGCAAGGAGATGTAGTTACTTTAGACTTTTTTCCAAAGATTTTCATTTGGCATTTTGACTTCACTCAATATATATGGACATCTGCTTGGTCTTCATTTGCTAGAA</gDNA_template>
            <first_frame> D  *  T  E  Q  Q  N  E  D  T  G  K  L  L  V  K  I  E  T  *  L  L  E  R  G  Q  R  L  G  *  R  R  L  W  C  T  T  M  G  E  L  L  K  G  R  G  P  I  G  *  S  M  N  I  V  Q  L  T  S  H  W  M  V  H  A  L  D  R :   E  P  L  C  F  V  V  S  L  R  R  M  N  *  S  K  L  K  M  S  K  V  H  I  L  M  K  L  N  I  L  F  L  L  L  L  L  E  Y  H  Q  P  M  M  D  Y  Q  Q  W  L  Y  L  Q  S  W  K  V  R  V  I  K  V  T  H  Q  K  P  L  D  A  K  L  M  T  Q  D  Y  L  L  I  V  V  V  I  V  A  L  L  V  M  V  K  I  *  W  W  T  *  H  Q  D  N :   Q  I  S  R  *  R  N  C  W  D  S  F  A  T  L  H  Q  S  L  L  I  G  L  R  C  I  H  S  R  R  W  S  L  D  L  L  S  H  M  V  P  *  A  M  R  *  T  V  I  K  R  M  S  S  V  R  M  *  *  M  I  S  I  R  M  S  F  *  I  Q  F  L  S  A  L  M  S  F  H  M  K  I  L  K  R  N  *  G  Q  C  G  L  P  R  T  V  L  T  L  *  Q  R  H  Q  L  R  I  L  E  L  V  V  C  *  S  H  K  S  H  K  S  Q :   L  G  E  I  Y  L  N  L  S  C  C  W  E  I  V  E  R  L  H  *  *  E  R  L  I  L  L  Q  P  Q  W  T  R  C  L  Q  H  L  I  F  A  M  I  T  Q  W  G  M  *  A  L  I  L  L  L  E  *  H  *  G  L  G  G  R  R  I  N  L  T  T  A  S  P  D  L  E  C  K  E  L  L  L  E  E  Y  V  T  K  *  N  F  K  P  E  E  *  S  V  A  C  R  L  I  L  I  R  V  E  Q  I  M  K  D  C  Q  L  Y  L  R :   V  K  S  S  P  M  K  I  V  L  L  *  V  L  L  S  P  V  M  *  H  K  I  P  C  A  K  N  *  K  G  I  V  K  W  L  K  T  *  G  V  Q  M  *  K  I  Q  M  L  *  R  E  Q  H  C  L  R  F  H  *  V  S  T  Y  P  R  C  S  L  L  Q  V  Y  S  *  S  S  *  V  F  V  D  S  L  S  *  D  S  L  H  P  N  C  S  F  L  *  L  A  *  H  V  L  L  I  L  S  P  F  Q  I  L  Q  R  S  *  S  *  E  N  L  E  V  T  T  S  V  Y  F  I  L  *  L  A  C  F  V  H  Y  *  H  Y  I  V  Q  G  D  V  V  T  L  D  F  F  P  K  I  F  I  W  H  F  D  F  T  Q  Y  I  W  T  S  A  W  S  S  F  A  R  </first_frame>
            <second_frame>  I  E  P  S  N  R  T  R  I  L  E  S  Y  W  *  R  *  K  H  S  Y  *  K  G  G  K  D  W  D  E  E  D  F  G  V  L  Q  W  A  S  S  *  R  E  E  D  Q  L  G  D  P  *  I  S  C  N  *  Q  V  I  G  W  F  T  P  W  T   : G  S  L  C  A  L  S  S  L  *  E  E  *  I  E  A  S  *  K  C  R  K  F  T  F  *  *  S  *  T  S  C  F  F  S  C  C  W  N  I  T  N  R  *  W  I  I  S  S  G  S  I  S  N  H  G  K  *  E  *  *  K  *  P  T  K  N  L  W  M  Q  N  S  *  H  K  I  I  Y  *  *  L  W  *  *  L  H  C  W  *  W  *  R  F  D  G  G  H  N  I  R  T   : T  R  S  P  D  R  G  I  V  G  T  L  S  R  P  F  T  R  A  Y  *  L  V  S  V  A  F  T  V  A  G  G  V  W  I  F  Y  L  T  W  Y  H  E  Q  *  D  K  L  *  S  K  G  C  P  V  S  E  C  N  K  *  S  Q  Y  E  *  V  S  K  F  N  S  C  Q  L  *  *  V  F  I  *  R  F  *  K  G  I  E  V  N  V  V  C  L  E  Q  Y  *  H  Y  N  N  G  T  S  Y  G  F  W  N  L  *  C  V  E  V  T  S  H  T  R  A   : S  *  E  R  Y  I  *  T  *  A  A  V  G  K  L  W  R  D  C  I  N  E  R  G  *  F  C  C  N  L  S  G  R  G  V  C  N  T  L  F  S  Q  *  S  L  N  G  E  C  R  H  *  F  C  F  W  N  N  T  K  D  S  A  D  A  E  S  T  *  Q  Q  P  A  R  I  W  N  A  R  N  Y  C  *  K  N  T  L  P  S  E  T  S  N  R  K  S  R  A  S  H  A  D  *  F  *  S  G  W  S  K  S  *  R  T  V  S  C  I  *   : E  *  K  V  L  Q  *  R  *  F  F  F  E  C  C  Y  L  Q  *  C  D  T  R  Y  H  V  Q  R  I  K  R  G  S  S  N  G  *  R  L  E  E  C  K  C  E  R  Y  K  C  F  K  E  S  S  I  V  F  V  F  I  K  F  L  H  I  Q  G  V  R  C  C  K  F  T  H  S  L  L  R  C  L  W  I  L  *  A  E  T  V  C  I  Q  I  V  A  S  C  N  W  L  N  M  F  C  *  F  Y  L  L  F  K  Y  C  K  G  A  K  V  E  K  T  *  K  L  L  L  V  Y  T  L  Y  Y  N  *  L  V  L  Y  I  T  S  T  I  L  C  K  E  M  *  L  L  *  T  F  F  Q  R  F  S  F  G  I  L  T  S  L  N  I  Y  G  H  L  L  G  L  H  L  L  E </second_frame>
            <third_frame>   L  N  R  A  T  E  R  G  Y  W  K  A  T  G  K  D  R  N  I  A  T  R  K  G  A  K  I  G  M  K  K  T  L  V  Y  Y  N  G  R  A  P  E  G  K  R  T  N  W  V  I  H  E  Y  R  A  T  D  K  S  L  D  G  S  R  P  G  Q  :  G  A  F  V  L  C  R  L  F  K  K  N  E  L  K  Q  A  E  N  V  E  S  S  H  F  D  E  V  E  H  L  V  S  S  P  A  V  G  I  S  P  T  D  D  G  L  S  A  V  A  L  S  P  I  M  E  S  E  S  N  K  S  N  P  P  K  T  S  G  C  K  T  H  D  T  R  L  S  I  D  S  C  G  N  S  C  T  A  G  D  G  E  D  L  M  V  D  I  T  S  G  Q  :  P  D  L  Q  I  E  E  L  L  G  L  F  R  D  P  S  P  E  P  I  D  W  S  P  L  H  S  Q  S  Q  V  E  F  G  S  S  I  S  H  G  T  M  S  N  E  I  N  C  D  Q  K  D  V  Q  C  Q  N  V  I  N  D  L  N  T  N  E  F  L  N  S  I  L  V  S  S  D  E  F  S  Y  E  D  S  E  K  E  L  R  S  M  W  F  A  S  N  S  I  N  T  I  T  T  A  P  V  T  D  S  G  T  C  S  V  L  K  S  Q  V  T  Q  E  P  :  V  R  R  D  I  F  E  P  E  L  L  L  G  N  C  G  E  T  A  L  M  R  E  V  N  S  V  A  T  S  V  D  E  V  F  A  T  P  Y  F  R  N  D  H  S  M  G  N  V  G  T  D  S  A  F  G  I  T  L  R  T  R  R  T  Q  N  Q  P  D  N  S  Q  P  G  S  G  M  Q  G  T  T  V  R  R  I  R  Y  Q  V  K  L  Q  T  G  R  V  E  R  R  M  P  T  D  S  D  Q  G  G  A  N  H  E  G  L  S  A  V  S  E  :  S  E  K  F  S  N  E  D  S  S  S  L  S  A  A  I  S  S  D  V  T  Q  D  T  M  C  K  E  L  K  G  D  R  Q  M  A  E  D  L  R  S  A  N  V  K  D  T  N  A  L  K  R  A  A  L  S  S  F  S  L  S  F  Y  I  S  K  V  F  A  V  A  S  L  L  I  V  F  L  G  V  C  G  F  F  K  L  R  Q  S  A  S  K  L  *  L  L  V  T  G  L  T  C  F  V  D  F  I  S  F  S  N  T  A  K  E  L  K  L  R  K  L  R  S  Y  Y  *  C  I  L  Y  I  I  I  S  L  F  C  T  L  L  A  L  Y  C  A  R  R  C  S  Y  F  R  L  F  S  K  D  F  H  L  A  F  *  L  H  S  I  Y  M  D  I  C  L  V  F  I  C  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42199" stop="42399"/>
                    <exon start="42863" stop="43168"/>
                    <exon start="43276" stop="43641"/>
                    <exon start="43770" stop="44126"/>
                    <exon start="44205" stop="44486"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1509</number_coding_nucleotides>
                  <number_encoded_amino_acids>503</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNRATERGYWKATGKDRNIATRKGAKIGMKKTLVYYNGRAPEGKRTNWVIHEYRATDKSLDGSRPGQGAFVLCRLFKKNELKQAENVESSHFDEVEHLVSSPAVGISPTDDGLSAVALSPIMESESNKSNPPKTSGCKTHDTRLSIDSCGNSCTAGDGEDLMVDITSGQPDLQIEELLGLFRDPSPEPIDWSPLHSQSQVEFGSSISHGTMSNEINCDQKDVQCQNVINDLNTNEFLNSILVSSDEFSYEDSEKELRSMWFASNSINTITTAPVTDSGTCSVLKSQVTQEPVRRDIFEPELLLGNCGETALMREVNSVATSVDEVFATPYFRNDHSMGNVGTDSAFGITLRTRRTQNQPDNSQPGSGMQGTTVRRIRYQVKLQTGRVERRMPTDSDQGGANHEGLSAVSESEKFSNEDSSSLSAAISSDVTQDTMCKELKGDRQMAEDLRSANVKDTNALKRAALSSFSLSFYISKVFAVASLLIVFLGVCGFFKLRQSASKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="46457" PGL_stop="50439"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46457" e_stop="46860"/>
            <exon e_start="47385" e_stop="47510"/>
            <exon e_start="48392" e_stop="48706"/>
            <exon e_start="49213" e_stop="49341"/>
            <exon e_start="49911" e_stop="50439"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.692" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46457" e_stop="46860" e_length="404"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="46861" i_stop="47384" i_length="524"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47385" e_stop="47510" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.893" acc_prob="0.983">
            <gDNA_intron_boundary i_start="47511" i_stop="48391" i_length="881"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48392" e_stop="48706" e_length="315"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.692">
            <gDNA_intron_boundary i_start="48707" i_stop="49212" i_length="506"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49213" e_stop="49341" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.967" acc_prob="0.991">
            <gDNA_intron_boundary i_start="49342" i_stop="49910" i_length="569"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="49911" e_stop="50439" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46457" stop="46860"/>
              <exon start="47385" stop="47510"/>
              <exon start="48392" stop="48706"/>
              <exon start="49213" stop="49341"/>
              <exon start="49911" stop="50430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46488" stop="46860"/>
              <exon start="47385" stop="47510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46504" stop="46857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47478" stop="47510"/>
              <exon start="48392" stop="48706"/>
              <exon start="49213" stop="49341"/>
              <exon start="49911" stop="50227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47479" stop="47510"/>
              <exon start="48392" stop="48706"/>
              <exon start="49213" stop="49306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49224" stop="49341"/>
              <exon start="49911" stop="50424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49227" stop="49341"/>
              <exon start="49911" stop="50274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49282" stop="49341"/>
              <exon start="49911" stop="50406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49325" stop="49341"/>
              <exon start="49911" stop="50439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279550" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCATCAGTCGTTGTAAACAACGATTAGATGAAAATCAACGTCCGCAAAATCAACTGGCAAAATGTTCACATTTTCTCCAAGTTTAGTACTCTTATTGCTTTTCTGCTTCAGCTTACTGTATTCAGTTCAAAGCAGCTACTTTGATCAAGAATTTGTTAAGCAGATACTGAGTTCAGCAAGTAAAGATAAAGATTGGTTAGTATCCATAAGAAGGAAAATTCATGAATACCCAGAACTCAGATTCGAAGAATATAATACCAGTGCTCTGATTCGTAGTGAACTTGATAAGCTTGGGGTTTATTATGAATACCCTTTTGCTAAAACTGGTATTGTTGCTCGAATTGGCAATGGTTCTCCCCCTGTTGTTGCTTTGCGAGCCGATATGGATGCCCTTCCTATGCAG : GAACTTGTTGAATGGGAACATAAGAGCAAAATTAATGGCAAAATGCATGGATGTGGACATGATGCTCATACGACGATGCTTCTTGGTGCTGCTAAGCTGCTGAATGAACGGAAGGACAAACTTAAT : GGAACCGTCAGACTTGTTTTCCAACCTGCGGAGGAAGGAGGAGCTGGTGCAAATCATATGATAAAGGAAGGAGCTCTAGGTGATGCAGAAGTTATATTTGGTATGCATGTTGATTTTAAAAGACCTACAGGGGGCATTGGCACGAGTCCTGGACCCCTTTTAGCTGCCGTTTGCTTCTTTGAAGCAAAAATAGAAGGAAAAGGTGGGCATGCTGCACAACCCCATGAAGCTGTGGATCCAATACTTGCTGCATCATTTGCAATTGTGGCATTGCAGCAGCTCATCTCAAGAGAAGTAGATCCCCTTCATAGTCAA : GTTCTTTCTGTTACTTATGTCAGAGGTGGATCAGCATCAAATGTAATTCCATCATATGTTGAATTTGGGGGAACTCTGAGGAGTCTAACAACTGAAGGCTTGTTTCAACTTCAAAAGAGGGTGAAAGAG : GTAATTGAAGGACAGGCAGCTGTGCATAGGTGTAAGGCGTACGTTGACATGAAAGAAGAGGATTTCCCAGCATATCCAGCTTGCACAAATGATGAGAACTTACATCAACATGTAGAGAGGGTTGGCAAACTCATGCTTGGTTCGGAGAACGTTGGGGATATTGAAAAGGTCATGGCAGGTGAGGACTTTGCCTTCTATCAACAAGTGATTCCTGGGGTTATCTTTCAAATAGGGATCAGAAATGAGAAGTTGGGCTCTACCCACGCCCCACATTCCCCACACTTCTTTCTTGACGAGGATGTCCTTCCAATTGGAGCAGCAATGCACACAGCCATAGCAGAGATGTATCTGAACGATTACCAACATTCCACTGCAGTTTAGATAATAACATTATTGTTTGATGGTCTCTTGAGTTCCATAAATGTTCCAATTACTCGTTCATTCTGCACATTGTCTATAATACAAAATAAATAAGCAAATCTAAAGCGGTGATGACCATCTGTTCATGTGGCCCATTTCAATTTCTTGA</gDNA_template>
            <first_frame> V  I  S  R  C  K  Q  R  L  D  E  N  Q  R  P  Q  N  Q  L  A  K  C  S  H  F  L  Q  V  *  Y  S  Y  C  F  S  A  S  A  Y  C  I  Q  F  K  A  A  T  L  I  K  N  L  L  S  R  Y  *  V  Q  Q  V  K  I  K  I  G  *  Y  P  *  E  G  K  F  M  N  T  Q  N  S  D  S  K  N  I  I  P  V  L  *  F  V  V  N  L  I  S  L  G  F  I  M  N  T  L  L  L  K  L  V  L  L  L  E  L  A  M  V  L  P  L  L  L  L  C  E  P  I  W  M  P  F  L  C  R :   N  L  L  N  G  N  I  R  A  K  L  M  A  K  C  M  D  V  D  M  M  L  I  R  R  C  F  L  V  L  L  S  C  *  M  N  G  R  T  N  L  M :   E  P  S  D  L  F  S  N  L  R  R  K  E  E  L  V  Q  I  I  *  *  R  K  E  L  *  V  M  Q  K  L  Y  L  V  C  M  L  I  L  K  D  L  Q  G  A  L  A  R  V  L  D  P  F  *  L  P  F  A  S  L  K  Q  K  *  K  E  K  V  G  M  L  H  N  P  M  K  L  W  I  Q  Y  L  L  H  H  L  Q  L  W  H  C  S  S  S  S  Q  E  K  *  I  P  F  I  V  K :   F  F  L  L  L  M  S  E  V  D  Q  H  Q  M  *  F  H  H  M  L  N  L  G  E  L  *  G  V  *  Q  L  K  A  C  F  N  F  K  R  G  *  K  R :   *  L  K  D  R  Q  L  C  I  G  V  R  R  T  L  T  *  K  K  R  I  S  Q  H  I  Q  L  A  Q  M  M  R  T  Y  I  N  M  *  R  G  L  A  N  S  C  L  V  R  R  T  L  G  I  L  K  R  S  W  Q  V  R  T  L  P  S  I  N  K  *  F  L  G  L  S  F  K  *  G  S  E  M  R  S  W  A  L  P  T  P  H  I  P  H  T  S  F  L  T  R  M  S  F  Q  L  E  Q  Q  C  T  Q  P  *  Q  R  C  I  *  T  I  T  N  I  P  L  Q  F  R  *  *  H  Y  C  L  M  V  S  *  V  P  *  M  F  Q  L  L  V  H  S  A  H  C  L  *  Y  K  I  N  K  Q  I  *  S  G  D  D  H  L  F  M  W  P  I  S  I  S  * </first_frame>
            <second_frame>  S  S  V  V  V  N  N  D  *  M  K  I  N  V  R  K  I  N  W  Q  N  V  H  I  F  S  K  F  S  T  L  I  A  F  L  L  Q  L  T  V  F  S  S  K  Q  L  L  *  S  R  I  C  *  A  D  T  E  F  S  K  *  R  *  R  L  V  S  I  H  K  K  E  N  S  *  I  P  R  T  Q  I  R  R  I  *  Y  Q  C  S  D  S  *  *  T  *  *  A  W  G  L  L  *  I  P  F  C  *  N  W  Y  C  C  S  N  W  Q  W  F  S  P  C  C  C  F  A  S  R  Y  G  C  P  S  Y  A   : G  T  C  *  M  G  T  *  E  Q  N  *  W  Q  N  A  W  M  W  T  *  C  S  Y  D  D  A  S  W  C  C  *  A  A  E  *  T  E  G  Q  T  *   : W  N  R  Q  T  C  F  P  T  C  G  G  R  R  S  W  C  K  S  Y  D  K  G  R  S  S  R  *  C  R  S  Y  I  W  Y  A  C  *  F  *  K  T  Y  R  G  H  W  H  E  S  W  T  P  F  S  C  R  L  L  L  *  S  K  N  R  R  K  R  W  A  C  C  T  T  P  *  S  C  G  S  N  T  C  C  I  I  C  N  C  G  I  A  A  A  H  L  K  R  S  R  S  P  S  *  S   : S  S  F  C  Y  L  C  Q  R  W  I  S  I  K  C  N  S  I  I  C  *  I  W  G  N  S  E  E  S  N  N  *  R  L  V  S  T  S  K  E  G  E  R   : G  N  *  R  T  G  S  C  A  *  V  *  G  V  R  *  H  E  R  R  G  F  P  S  I  S  S  L  H  K  *  *  E  L  T  S  T  C  R  E  G  W  Q  T  H  A  W  F  G  E  R  W  G  Y  *  K  G  H  G  R  *  G  L  C  L  L  S  T  S  D  S  W  G  Y  L  S  N  R  D  Q  K  *  E  V  G  L  Y  P  R  P  T  F  P  T  L  L  S  *  R  G  C  P  S  N  W  S  S  N  A  H  S  H  S  R  D  V  S  E  R  L  P  T  F  H  C  S  L  D  N  N  I  I  V  *  W  S  L  E  F  H  K  C  S  N  Y  S  F  I  L  H  I  V  Y  N  T  K  *  I  S  K  S  K  A  V  M  T  I  C  S  C  G  P  F  Q  F  L   </second_frame>
            <third_frame>   H  Q  S  L  *  T  T  I  R  *  K  S  T  S  A  K  S  T  G  K  M  F  T  F  S  P  S  L  V  L  L  L  L  F  C  F  S  L  L  Y  S  V  Q  S  S  Y  F  D  Q  E  F  V  K  Q  I  L  S  S  A  S  K  D  K  D  W  L  V  S  I  R  R  K  I  H  E  Y  P  E  L  R  F  E  E  Y  N  T  S  A  L  I  R  S  E  L  D  K  L  G  V  Y  Y  E  Y  P  F  A  K  T  G  I  V  A  R  I  G  N  G  S  P  P  V  V  A  L  R  A  D  M  D  A  L  P  M  Q  :  E  L  V  E  W  E  H  K  S  K  I  N  G  K  M  H  G  C  G  H  D  A  H  T  T  M  L  L  G  A  A  K  L  L  N  E  R  K  D  K  L  N  :  G  T  V  R  L  V  F  Q  P  A  E  E  G  G  A  G  A  N  H  M  I  K  E  G  A  L  G  D  A  E  V  I  F  G  M  H  V  D  F  K  R  P  T  G  G  I  G  T  S  P  G  P  L  L  A  A  V  C  F  F  E  A  K  I  E  G  K  G  G  H  A  A  Q  P  H  E  A  V  D  P  I  L  A  A  S  F  A  I  V  A  L  Q  Q  L  I  S  R  E  V  D  P  L  H  S  Q  :  V  L  S  V  T  Y  V  R  G  G  S  A  S  N  V  I  P  S  Y  V  E  F  G  G  T  L  R  S  L  T  T  E  G  L  F  Q  L  Q  K  R  V  K  E  :  V  I  E  G  Q  A  A  V  H  R  C  K  A  Y  V  D  M  K  E  E  D  F  P  A  Y  P  A  C  T  N  D  E  N  L  H  Q  H  V  E  R  V  G  K  L  M  L  G  S  E  N  V  G  D  I  E  K  V  M  A  G  E  D  F  A  F  Y  Q  Q  V  I  P  G  V  I  F  Q  I  G  I  R  N  E  K  L  G  S  T  H  A  P  H  S  P  H  F  F  L  D  E  D  V  L  P  I  G  A  A  M  H  T  A  I  A  E  M  Y  L  N  D  Y  Q  H  S  T  A  V  *  I  I  T  L  L  F  D  G  L  L  S  S  I  N  V  P  I  T  R  S  F  C  T  L  S  I  I  Q  N  K  *  A  N  L  K  R  *  *  P  S  V  H  V  A  H  F  N  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46489" stop="46860"/>
                    <exon start="47385" stop="47510"/>
                    <exon start="48392" stop="48706"/>
                    <exon start="49213" stop="49341"/>
                    <exon start="49911" stop="50291"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1320</number_coding_nucleotides>
                  <number_encoded_amino_acids>440</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSTSAKSTGKMFTFSPSLVLLLLFCFSLLYSVQSSYFDQEFVKQILSSASKDKDWLVSIRRKIHEYPELRFEEYNTSALIRSELDKLGVYYEYPFAKTGIVARIGNGSPPVVALRADMDALPMQELVEWEHKSKINGKMHGCGHDAHTTMLLGAAKLLNERKDKLNGTVRLVFQPAEEGGAGANHMIKEGALGDAEVIFGMHVDFKRPTGGIGTSPGPLLAAVCFFEAKIEGKGGHAAQPHEAVDPILAASFAIVALQQLISREVDPLHSQVLSVTYVRGGSASNVIPSYVEFGGTLRSLTTEGLFQLQKRVKEVIEGQAAVHRCKAYVDMKEEDFPAYPACTNDENLHQHVERVGKLMLGSENVGDIEKVMAGEDFAFYQQVIPGVIFQIGIRNEKLGSTHAPHSPHFFLDEDVLPIGAAMHTAIAEMYLNDYQHSTAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="52412" PGL_stop="52931"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52412" e_stop="52931"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="52412" e_stop="52931" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52412" stop="52931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699100" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCACCTGAGATCATTACAGATTATGTTGGTAGTCCACTCACTGATCCTCTGAGGTCATTCCCTTTGAACTCGACAGATAAGGGTGTTCATAATACTTCATTTCCATTGAGAAGGACACAGTCCTCTTGTTCAGCACCTGTTCAGCGCCCGCAGAGTTGGACAAGTGGTCTCTTCAGGGCACCTTCTTTACCTCAGCCATATGTAGGATCTCCACCTTTGTACCATGCACCATATGAGCTTTCAACTTCAGTCAGTAATGTATATGGACAGAGGATTCCACCTAACTACAAATATTCAACTCACCAGAAAACAACTAGTTTTGATGATGACCAACTTTCCCCTCCATTTTCATCATCACCATCTCCACCCACATATCTTTCAGGTGCAAATCTTGTGCAGACTCATTTGCGTTCAGAAACTGATCCTGTCAGTATCCCTCATCCATTAATAGGCAGAACTTCCAGACACCTATCTCCTAATTTGTCTGATCCAAACAGGCATTATCTCCCACCTATGTCA</gDNA_template>
            <first_frame> S  T  *  D  H  Y  R  L  C  W  *  S  T  H  *  S  S  E  V  I  P  F  E  L  D  R  *  G  C  S  *  Y  F  I  S  I  E  K  D  T  V  L  L  F  S  T  C  S  A  P  A  E  L  D  K  W  S  L  Q  G  T  F  F  T  S  A  I  C  R  I  S  T  F  V  P  C  T  I  *  A  F  N  F  S  Q  *  C  I  W  T  E  D  S  T  *  L  Q  I  F  N  S  P  E  N  N  *  F  *  *  *  P  T  F  P  S  I  F  I  I  T  I  S  T  H  I  S  F  R  C  K  S  C  A  D  S  F  A  F  R  N  *  S  C  Q  Y  P  S  S  I  N  R  Q  N  F  Q  T  P  I  S  *  F  V  *  S  K  Q  A  L  S  P  T  Y  V  </first_frame>
            <second_frame>  P  P  E  I  I  T  D  Y  V  G  S  P  L  T  D  P  L  R  S  F  P  L  N  S  T  D  K  G  V  H  N  T  S  F  P  L  R  R  T  Q  S  S  C  S  A  P  V  Q  R  P  Q  S  W  T  S  G  L  F  R  A  P  S  L  P  Q  P  Y  V  G  S  P  P  L  Y  H  A  P  Y  E  L  S  T  S  V  S  N  V  Y  G  Q  R  I  P  P  N  Y  K  Y  S  T  H  Q  K  T  T  S  F  D  D  D  Q  L  S  P  P  F  S  S  S  P  S  P  P  T  Y  L  S  G  A  N  L  V  Q  T  H  L  R  S  E  T  D  P  V  S  I  P  H  P  L  I  G  R  T  S  R  H  L  S  P  N  L  S  D  P  N  R  H  Y  L  P  P  M  S </second_frame>
            <third_frame>   H  L  R  S  L  Q  I  M  L  V  V  H  S  L  I  L  *  G  H  S  L  *  T  R  Q  I  R  V  F  I  I  L  H  F  H  *  E  G  H  S  P  L  V  Q  H  L  F  S  A  R  R  V  G  Q  V  V  S  S  G  H  L  L  Y  L  S  H  M  *  D  L  H  L  C  T  M  H  H  M  S  F  Q  L  Q  S  V  M  Y  M  D  R  G  F  H  L  T  T  N  I  Q  L  T  R  K  Q  L  V  L  M  M  T  N  F  P  L  H  F  H  H  H  H  L  H  P  H  I  F  Q  V  Q  I  L  C  R  L  I  C  V  Q  K  L  I  L  S  V  S  L  I  H  *  *  A  E  L  P  D  T  Y  L  L  I  C  L  I  Q  T  G  I  I  S  H  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52413" stop="52931"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PPEIITDYVGSPLTDPLRSFPLNSTDKGVHNTSFPLRRTQSSCSAPVQRPQSWTSGLFRAPSLPQPYVGSPPLYHAPYELSTSVSNVYGQRIPPNYKYSTHQKTTSFDDDQLSPPFSSSPSPPTYLSGANLVQTHLRSETDPVSIPHPLIGRTSRHLSPNLSDPNRHYLPPMS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="61656" PGL_stop="60823"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61656" e_stop="60823"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="61656" e_stop="60823" e_length="834"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61656" stop="61066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61656" stop="61154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61656" stop="61155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61656" stop="61187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61656" stop="61187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61656" stop="61270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61656" stop="61271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61656" stop="61271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61656" stop="61273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61656" stop="61327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61656" stop="61420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61454" stop="60823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371446" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61149" stop="60823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280610" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGGAGAAATATACATAGAATATTTCTCATTAGTTGTCTGCAGTTGGACGGAGTCATACAAGGAAGATAAGAAGGAAGAAATTTCTCCTTTTGACAGCATAAAACCCCCAATTTTGAATCATTTCTAGGGTTCACGATTTCCTCAATTAGGGTTTCTCTGTATCATCAATTTTGGTGAAATTGAGCTTCTTAGACTTTAGAGGAGCTTTATCAATGAAATCAGAGTTGAGAAAATCCCAATTTCATCTCCAAATTCTGCTATTTGCTGTCATCTTTTTGTCCATTACTGTCTGTTTAAACGGTTTAAATCCACTACCTTCTCATCAAGACGACGAAGATAAATGCCCTAGAACTCCATTTCCGACCGATTCTTGCCCCATCAATTGCTTCCGACCCGACCCGGTTTGCGGTGTCGATGGAGTTACCTACTGGTGTGGTTGTCCCGATGCTCACTGTGCTGGTGTTCGCGTTGCCAAATTAGGACCTTGCACTGTGGGAAATGGAGGGTCCGGTGCAGTTCCGGGTCAGGCTCTGTTATTGTTTCATATTGTTTGGTTGATATTTCTTGGTATTTCTTTAATATTTGGGCTTCTTTAGCTTGATCATGTCTACTTTGTTGCTTTGCGGTTTCTGTCAAGTTGATTTGTTCATTATGTGGTAGAGGTTAGATCTGATAGTGTTATTTTAACATCCATTTTACTGGATATATGTTTGTATTTTCTGTATATATGAACGGAATCCACGGTTGGTTTCAGATTTATTATTTGTTTATTGTTGCGATCAATAAAATTCTAGGAGATTCTGATATTTTGTATCTTGGTCTTTATTAATTT</gDNA_template>
            <first_frame> R  G  E  I  Y  I  E  Y  F  S  L  V  V  C  S  W  T  E  S  Y  K  E  D  K  K  E  E  I  S  P  F  D  S  I  K  P  P  I  L  N  H  F  *  G  S  R  F  P  Q  L  G  F  L  C  I  I  N  F  G  E  I  E  L  L  R  L  *  R  S  F  I  N  E  I  R  V  E  K  I  P  I  S  S  P  N  S  A  I  C  C  H  L  F  V  H  Y  C  L  F  K  R  F  K  S  T  T  F  S  S  R  R  R  R  *  M  P  *  N  S  I  S  D  R  F  L  P  H  Q  L  L  P  T  R  P  G  L  R  C  R  W  S  Y  L  L  V  W  L  S  R  C  S  L  C  W  C  S  R  C  Q  I  R  T  L  H  C  G  K  W  R  V  R  C  S  S  G  S  G  S  V  I  V  S  Y  C  L  V  D  I  S  W  Y  F  F  N  I  W  A  S  L  A  *  S  C  L  L  C  C  F  A  V  S  V  K  L  I  C  S  L  C  G  R  G  *  I  *  *  C  Y  F  N  I  H  F  T  G  Y  M  F  V  F  S  V  Y  M  N  G  I  H  G  W  F  Q  I  Y  Y  L  F  I  V  A  I  N  K  I  L  G  D  S  D  I  L  Y  L  G  L  Y  *  F </first_frame>
            <second_frame>  E  E  K  Y  T  *  N  I  S  H  *  L  S  A  V  G  R  S  H  T  R  K  I  R  R  K  K  F  L  L  L  T  A  *  N  P  Q  F  *  I  I  S  R  V  H  D  F  L  N  *  G  F  S  V  S  S  I  L  V  K  L  S  F  L  D  F  R  G  A  L  S  M  K  S  E  L  R  K  S  Q  F  H  L  Q  I  L  L  F  A  V  I  F  L  S  I  T  V  C  L  N  G  L  N  P  L  P  S  H  Q  D  D  E  D  K  C  P  R  T  P  F  P  T  D  S  C  P  I  N  C  F  R  P  D  P  V  C  G  V  D  G  V  T  Y  W  C  G  C  P  D  A  H  C  A  G  V  R  V  A  K  L  G  P  C  T  V  G  N  G  G  S  G  A  V  P  G  Q  A  L  L  L  F  H  I  V  W  L  I  F  L  G  I  S  L  I  F  G  L  L  *  L  D  H  V  Y  F  V  A  L  R  F  L  S  S  *  F  V  H  Y  V  V  E  V  R  S  D  S  V  I  L  T  S  I  L  L  D  I  C  L  Y  F  L  Y  I  *  T  E  S  T  V  G  F  R  F  I  I  C  L  L  L  R  S  I  K  F  *  E  I  L  I  F  C  I  L  V  F  I  N   </second_frame>
            <third_frame>   R  R  N  I  H  R  I  F  L  I  S  C  L  Q  L  D  G  V  I  Q  G  R  *  E  G  R  N  F  S  F  *  Q  H  K  T  P  N  F  E  S  F  L  G  F  T  I  S  S  I  R  V  S  L  Y  H  Q  F  W  *  N  *  A  S  *  T  L  E  E  L  Y  Q  *  N  Q  S  *  E  N  P  N  F  I  S  K  F  C  Y  L  L  S  S  F  C  P  L  L  S  V  *  T  V  *  I  H  Y  L  L  I  K  T  T  K  I  N  A  L  E  L  H  F  R  P  I  L  A  P  S  I  A  S  D  P  T  R  F  A  V  S  M  E  L  P  T  G  V  V  V  P  M  L  T  V  L  V  F  A  L  P  N  *  D  L  A  L  W  E  M  E  G  P  V  Q  F  R  V  R  L  C  Y  C  F  I  L  F  G  *  Y  F  L  V  F  L  *  Y  L  G  F  F  S  L  I  M  S  T  L  L  L  C  G  F  C  Q  V  D  L  F  I  M  W  *  R  L  D  L  I  V  L  F  *  H  P  F  Y  W  I  Y  V  C  I  F  C  I  Y  E  R  N  P  R  L  V  S  D  L  L  F  V  Y  C  C  D  Q  *  N  S  R  R  F  *  Y  F  V  S  W  S  L  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61505" stop="61059"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFSVSSILVKLSFLDFRGALSMKSELRKSQFHLQILLFAVIFLSITVCLNGLNPLPSHQDDEDKCPRTPFPTDSCPINCFRPDPVCGVDGVTYWCGCPDAHCAGVRVAKLGPCTVGNGGSGAVPGQALLLFHIVWLIFLGISLIFGLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="68303" PGL_stop="68647"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68303" e_stop="68576"/>
            <exon e_start="68640" e_stop="68647"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.132" acc_prob="0.785" e_score="1.000"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68303" e_stop="68576" e_length="274"/>
          </exon>
          <intron i_serial="1" don_prob="0.132" acc_prob="0.785">
            <gDNA_intron_boundary i_start="68577" i_stop="68639" i_length="63"/>
          </intron>
          <exon e_serial="2" e_score="0.625">
            <gDNA_exon_boundary e_start="68640" e_stop="68647" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68303" stop="68576"/>
              <exon start="68640" stop="68647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTTTCAATAGTGTTGGTAAGTCAAGCAAGTCACAGACGGAATCCTCAGGTCCCGAGCCCATGATCGAAAGCTGAGAAGTTCATATTACTATCAAATTGGATGTAGACCAATTTGGTGCAATTTCTAGGTTTCTTTTTGCAGTTGACTATATACATCTTTGACTCTATTTGTGCAGCCTACAAAGAGGTGATAGTTTACGATGATTGGCTCTCTTAGATATCATGACTTTTGCTGTTCAATGTTATGGAAGATTTCGTCAAGTCTTTCACAA : GAAAAATC</gDNA_template>
            <first_frame> F  F  S  I  V  L  V  S  Q  A  S  H  R  R  N  P  Q  V  P  S  P  *  S  K  A  E  K  F  I  L  L  S  N  W  M  *  T  N  L  V  Q  F  L  G  F  F  L  Q  L  T  I  Y  I  F  D  S  I  C  A  A  Y  K  E  V  I  V  Y  D  D  W  L  S  *  I  S  *  L  L  L  F  N  V  M  E  D  F  V  K  S  F  T   : R  K  I </first_frame>
            <second_frame>  S  F  Q  *  C  W  *  V  K  Q  V  T  D  G  I  L  R  S  R  A  H  D  R  K  L  R  S  S  Y  Y  Y  Q  I  G  C  R  P  I  W  C  N  F  *  V  S  F  C  S  *  L  Y  T  S  L  T  L  F  V  Q  P  T  K  R  *  *  F  T  M  I  G  S  L  R  Y  H  D  F  C  C  S  M  L  W  K  I  S  S  S  L  S  Q  :  E  K   </second_frame>
            <third_frame>   L  F  N  S  V  G  K  S  S  K  S  Q  T  E  S  S  G  P  E  P  M  I  E  S  *  E  V  H  I  T  I  K  L  D  V  D  Q  F  G  A  I  S  R  F  L  F  A  V  D  Y  I  H  L  *  L  Y  L  C  S  L  Q  R  G  D  S  L  R  *  L  A  L  L  D  I  M  T  F  A  V  Q  C  Y  G  R  F  R  Q  V  F  H  K :   K  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0304I22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="78909" PGL_stop="77430"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78909" e_stop="78710"/>
            <exon e_start="77859" e_stop="77430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.985"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="78909" e_stop="78710" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="78709" i_stop="77860" i_length="850"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="77859" e_stop="77430" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78909" stop="78710"/>
              <exon start="77859" stop="77671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78899" stop="78710"/>
              <exon start="77859" stop="77504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78896" stop="78710"/>
              <exon start="77859" stop="77554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78890" stop="78710"/>
              <exon start="77859" stop="77504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78889" stop="78710"/>
              <exon start="77859" stop="77504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78889" stop="78710"/>
              <exon start="77859" stop="77504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78888" stop="78710"/>
              <exon start="77859" stop="77546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77829" stop="77488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77828" stop="77504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77828" stop="77504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77809" stop="77430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361831" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGTTTACAAGCCTTACAACTTTAATTCCTCAATATTAATATTACTCTCTCAAGTTTGATTTCCTGTCCATCTCTCTCGCTCACCTCTAACAAACATGGGAGCTTGTGCGAGCAGACCTAAGGATTTGGACAGGGACTTAGCCCCTGCCCCTGTTCCCGTCGAGGAATCTGTCAGCCCTAAGGCTGACGCTGTTCCTCAG : GAGAAAAATGGAGAGGAATCAAAGAAGGAAGAGCCTTTGATTGATGTGTCAACAGAGGATACTAAAATTGAGGAAGCAAGCACAGAGACAAAGGCTGTTGTTGAAGCAGAAAAGGAAACAGCAGAGGAAGTCAAAGTTGAGGCTGTGAAAGAAGAGCCCAAAGAGCAGCAGCCAGCTGAGTAAAAAAAAAGAGGCTGAAACTGTTGCCCAGTAAATAATAACTCTCTACTTATCAAGTAAATAATGTATACATAAAATAATGGGCTTTGAGATTTAATTTTCAATCATATCTTTAGGCTTAATCAAGTTGATTCATTTGTTGAGGCTCCTTTACTTTCATCAAAACAACAACAATAGTAACACAAAAATTCTTTGTATTTCTAATTCGCCTTTATAAATATTCAAAGGATTCTACGTTCTATTGTCAGAA</gDNA_template>
            <first_frame> K  F  T  S  L  T  T  L  I  P  Q  Y  *  Y  Y  S  L  K  F  D  F  L  S  I  S  L  A  H  L  *  Q  T  W  E  L  V  R  A  D  L  R  I  W  T  G  T  *  P  L  P  L  F  P  S  R  N  L  S  A  L  R  L  T  L  F  L  R :   R  K  M  E  R  N  Q  R  R  K  S  L  *  L  M  C  Q  Q  R  I  L  K  L  R  K  Q  A  Q  R  Q  R  L  L  L  K  Q  K  R  K  Q  Q  R  K  S  K  L  R  L  *  K  K  S  P  K  S  S  S  Q  L  S  K  K  K  E  A  E  T  V  A  Q  *  I  I  T  L  Y  L  S  S  K  *  C  I  H  K  I  M  G  F  E  I  *  F  S  I  I  S  L  G  L  I  K  L  I  H  L  L  R  L  L  Y  F  H  Q  N  N  N  N  S  N  T  K  I  L  C  I  S  N  S  P  L  *  I  F  K  G  F  Y  V  L  L  S  E </first_frame>
            <second_frame>  S  L  Q  A  L  Q  L  *  F  L  N  I  N  I  T  L  S  S  L  I  S  C  P  S  L  S  L  T  S  N  K  H  G  S  L  C  E  Q  T  *  G  F  G  Q  G  L  S  P  C  P  C  S  R  R  G  I  C  Q  P  *  G  *  R  C  S  S   : G  E  K  W  R  G  I  K  E  G  R  A  F  D  *  C  V  N  R  G  Y  *  N  *  G  S  K  H  R  D  K  G  C  C  *  S  R  K  G  N  S  R  G  S  Q  S  *  G  C  E  R  R  A  Q  R  A  A  A  S  *  V  K  K  K  R  L  K  L  L  P  S  K  *  *  L  S  T  Y  Q  V  N  N  V  Y  I  K  *  W  A  L  R  F  N  F  Q  S  Y  L  *  A  *  S  S  *  F  I  C  *  G  S  F  T  F  I  K  T  T  T  I  V  T  Q  K  F  F  V  F  L  I  R  L  Y  K  Y  S  K  D  S  T  F  Y  C  Q   </second_frame>
            <third_frame>   V  Y  K  P  Y  N  F  N  S  S  I  L  I  L  L  S  Q  V  *  F  P  V  H  L  S  R  S  P  L  T  N  M  G  A  C  A  S  R  P  K  D  L  D  R  D  L  A  P  A  P  V  P  V  E  E  S  V  S  P  K  A  D  A  V  P  Q  :  E  K  N  G  E  E  S  K  K  E  E  P  L  I  D  V  S  T  E  D  T  K  I  E  E  A  S  T  E  T  K  A  V  V  E  A  E  K  E  T  A  E  E  V  K  V  E  A  V  K  E  E  P  K  E  Q  Q  P  A  E  *  K  K  R  G  *  N  C  C  P  V  N  N  N  S  L  L  I  K  *  I  M  Y  T  *  N  N  G  L  *  D  L  I  F  N  H  I  F  R  L  N  Q  V  D  S  F  V  E  A  P  L  L  S  S  K  Q  Q  Q  *  *  H  K  N  S  L  Y  F  *  F  A  F  I  N  I  Q  R  I  L  R  S  I  V  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78850" stop="78710"/>
                    <exon start="77859" stop="77677"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPVHLSRSPLTNMGACASRPKDLDRDLAPAPVPVEESVSPKADAVPQEKNGEESKKEEPLIDVSTEDTKIEEASTETKAVVEAEKETAEEVKVEAVKEEPKEQQPAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="79718" PGL_stop="81064"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79718" e_stop="79799"/>
            <exon e_start="80538" e_stop="81064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79718" e_stop="79799" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="79800" i_stop="80537" i_length="738"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80538" e_stop="81064" e_length="527"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79718" stop="79799"/>
              <exon start="80538" stop="81064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79718" stop="79799"/>
              <exon start="80538" stop="81064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80739" stop="80969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221089" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG : AGAGAACCTTGAATCCAGAAAGCGCCCAGAAGCCTCGTCTAGAGTATCTGCAACAACCAGAAAATCTCAAGATGCTGCTGTAGGTGCCCTTGTTCACATGTTGAGAACTGCTCCTCCGCTGCGTCAAGATTCTACTTGCTATACTACAGATTCTATAGAGGGAGAGGTAGAGGGGGAAACTGGCACTGCATCTCAGTTCTATGTTCCTAGGAAGGCATCAGATGCATTGGAGGAGCTCAAAGCTTATACTGAGTTGAAAGATATGTTACTTCCCAAGAGCACGACCCGCTCAGACAGTGAGGATGGGAGCTATGCGTGATGTACATATATACTTGTTTGCTAAGTAACGTTAAGGAGTGTTTACTGTGTGAGAGAAGTGAGGACTAACAGATTCTGTACATAAATGATGAGAAATGGCAAGTATGATAGTTAATATGCTGCCTTATTTTGACACTACTTGAAAACATTTGTGTTTCGAAGAAACAAGTAGTAGGTATCTTAAAAGAATATGCTCTATTGAGTTCCTA</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   : E  R  T  L  N  P  E  S  A  Q  K  P  R  L  E  Y  L  Q  Q  P  E  N  L  K  M  L  L  *  V  P  L  F  T  C  *  E  L  L  L  R  C  V  K  I  L  L  A  I  L  Q  I  L  *  R  E  R  *  R  G  K  L  A  L  H  L  S  S  M  F  L  G  R  H  Q  M  H  W  R  S  S  K  L  I  L  S  *  K  I  C  Y  F  P  R  A  R  P  A  Q  T  V  R  M  G  A  M  R  D  V  H  I  Y  L  F  A  K  *  R  *  G  V  F  T  V  *  E  K  *  G  L  T  D  S  V  H  K  *  *  E  M  A  S  M  I  V  N  M  L  P  Y  F  D  T  T  *  K  H  L  C  F  E  E  T  S  S  R  Y  L  K  R  I  C  S  I  E  F  L </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  :  R  E  P  *  I  Q  K  A  P  R  S  L  V  *  S  I  C  N  N  Q  K  I  S  R  C  C  C  R  C  P  C  S  H  V  E  N  C  S  S  A  A  S  R  F  Y  L  L  Y  Y  R  F  Y  R  G  R  G  R  G  G  N  W  H  C  I  S  V  L  C  S  *  E  G  I  R  C  I  G  G  A  Q  S  L  Y  *  V  E  R  Y  V  T  S  Q  E  H  D  P  L  R  Q  *  G  W  E  L  C  V  M  Y  I  Y  T  C  L  L  S  N  V  K  E  C  L  L  C  E  R  S  E  D  *  Q  I  L  Y  I  N  D  E  K  W  Q  V  *  *  L  I  C  C  L  I  L  T  L  L  E  N  I  C  V  S  K  K  Q  V  V  G  I  L  K  E  Y  A  L  L  S  S   </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  * :   E  N  L  E  S  R  K  R  P  E  A  S  S  R  V  S  A  T  T  R  K  S  Q  D  A  A  V  G  A  L  V  H  M  L  R  T  A  P  P  L  R  Q  D  S  T  C  Y  T  T  D  S  I  E  G  E  V  E  G  E  T  G  T  A  S  Q  F  Y  V  P  R  K  A  S  D  A  L  E  E  L  K  A  Y  T  E  L  K  D  M  L  L  P  K  S  T  T  R  S  D  S  E  D  G  S  Y  A  *  C  T  Y  I  L  V  C  *  V  T  L  R  S  V  Y  C  V  R  E  V  R  T  N  R  F  C  T  *  M  M  R  N  G  K  Y  D  S  *  Y  A  A  L  F  *  H  Y  L  K  T  F  V  F  R  R  N  K  *  *  V  S  *  K  N  M  L  Y  *  V  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80539" stop="80856"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENLESRKRPEASSRVSATTRKSQDAAVGALVHMLRTAPPLRQDSTCYTTDSIEGEVEGETGTASQFYVPRKASDALEELKAYTELKDMLLPKSTTRSDSEDGSYA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="87099" PGL_stop="86591"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87099" e_stop="86591"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87099" e_stop="86591" e_length="509"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87099" stop="86591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248336" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATGTCATTTTCAATCTTTTTTCCTTCTAAGCTAATTAACAATTGGTATGTGGGAAGAAAGTATAAACAGACAAAAAGTACCTTGTTTAATTAGACTCCAAATTTTAGTGTATTGTTTTGTTGTATTTTAATATCATGAAAAGGATTGGAAGAACCTTACGCCTTAAGCTATGCAAAGGTCTTGGTCAAGGCCCAAGGGAAATTGCACGTTGTTAAAATGAATTTTGAGTTCGATGATAAATTCAGAATATTTAAATTTTGATTTTAGTATGTTTTATTATAATTTAAAAGTAAGACCATTGAACTTTTTATTCTCAATATTTTTTTATTTTTACGAGTGTAGTTAATCTTTTGAAAAGTAACAATTGATTGATTATCCACACAAAGTTGAATAGAGAGCTCCAATGTATTATATATCAAAAGACGTGACGTAATCTAACAGTTCGTTTTGACTACCGCTTTAAAAGATTCTCTGTCAAGTGCTTTTATATATTTTTACTACAATA</gDNA_template>
            <first_frame> K  N  V  I  F  N  L  F  S  F  *  A  N  *  Q  L  V  C  G  K  K  V  *  T  D  K  K  Y  L  V  *  L  D  S  K  F  *  C  I  V  L  L  Y  F  N  I  M  K  R  I  G  R  T  L  R  L  K  L  C  K  G  L  G  Q  G  P  R  E  I  A  R  C  *  N  E  F  *  V  R  *  *  I  Q  N  I  *  I  L  I  L  V  C  F  I  I  I  *  K  *  D  H  *  T  F  Y  S  Q  Y  F  F  I  F  T  S  V  V  N  L  L  K  S  N  N  *  L  I  I  H  T  K  L  N  R  E  L  Q  C  I  I  Y  Q  K  T  *  R  N  L  T  V  R  F  D  Y  R  F  K  R  F  S  V  K  C  F  Y  I  F  L  L  Q   </first_frame>
            <second_frame>  K  M  S  F  S  I  F  F  P  S  K  L  I  N  N  W  Y  V  G  R  K  Y  K  Q  T  K  S  T  L  F  N  *  T  P  N  F  S  V  L  F  C  C  I  L  I  S  *  K  G  L  E  E  P  Y  A  L  S  Y  A  K  V  L  V  K  A  Q  G  K  L  H  V  V  K  M  N  F  E  F  D  D  K  F  R  I  F  K  F  *  F  *  Y  V  L  L  *  F  K  S  K  T  I  E  L  F  I  L  N  I  F  L  F  L  R  V  *  L  I  F  *  K  V  T  I  D  *  L  S  T  Q  S  *  I  E  S  S  N  V  L  Y  I  K  R  R  D  V  I  *  Q  F  V  L  T  T  A  L  K  D  S  L  S  S  A  F  I  Y  F  Y  Y  N  </second_frame>
            <third_frame>   K  C  H  F  Q  S  F  F  L  L  S  *  L  T  I  G  M  W  E  E  S  I  N  R  Q  K  V  P  C  L  I  R  L  Q  I  L  V  Y  C  F  V  V  F  *  Y  H  E  K  D  W  K  N  L  T  P  *  A  M  Q  R  S  W  S  R  P  K  G  N  C  T  L  L  K  *  I  L  S  S  M  I  N  S  E  Y  L  N  F  D  F  S  M  F  Y  Y  N  L  K  V  R  P  L  N  F  L  F  S  I  F  F  Y  F  Y  E  C  S  *  S  F  E  K  *  Q  L  I  D  Y  P  H  K  V  E  *  R  A  P  M  Y  Y  I  S  K  D  V  T  *  S  N  S  S  F  *  L  P  L  *  K  I  L  C  Q  V  L  L  Y  I  F  T  T  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0304I22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="89616" PGL_stop="104110"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95469" e_stop="95925"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="95469" e_stop="95925" e_length="457"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95469" stop="95901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95641" stop="95925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95641" stop="95922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95642" stop="95925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311813" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATATGAAGTCCAAGTGAGCAAAGAAGAAGTGACGAAAGCCATAAAAGAAGTGATGGACAAAGAGAAAAAAGCAAATAATAGGAGAATAAGAGCCAAAGAAGTTAGAGAAATGGCAAAAAAAGCTATAGAAGAAGGTGGATCTTCTCATCTCAGTTTGACACTACTAATCAAAGAAGTACAAGAATTCAACTAAACCAATTAGCTTAAAATGATTATGCACAAGCACGCAGTGTACTTTCTTTGATTTTTATGTTTTTGGTAGCGCAAGCGAAATCAGGGAAGGGATTAGAAAGTGAAGAATCAAACCCTCACAGGTGAAATTCAGACAACCAATCAACTGAACTACTAAGATTCCCCAATTATTTTTGTACACGAATACGACAAGACACAGTTATATATTAATTTTGCCAGTTTCAACTTTCAACAATGAGTTTTATATTAAGTATAATTAAGTG</gDNA_template>
            <first_frame> K  Y  E  V  Q  V  S  K  E  E  V  T  K  A  I  K  E  V  M  D  K  E  K  K  A  N  N  R  R  I  R  A  K  E  V  R  E  M  A  K  K  A  I  E  E  G  G  S  S  H  L  S  L  T  L  L  I  K  E  V  Q  E  F  N  *  T  N  *  L  K  M  I  M  H  K  H  A  V  Y  F  L  *  F  L  C  F  W  *  R  K  R  N  Q  G  R  D  *  K  V  K  N  Q  T  L  T  G  E  I  Q  T  T  N  Q  L  N  Y  *  D  S  P  I  I  F  V  H  E  Y  D  K  T  Q  L  Y  I  N  F  A  S  F  N  F  Q  Q  *  V  L  Y  *  V  *  L  S  </first_frame>
            <second_frame>  N  M  K  S  K  *  A  K  K  K  *  R  K  P  *  K  K  *  W  T  K  R  K  K  Q  I  I  G  E  *  E  P  K  K  L  E  K  W  Q  K  K  L  *  K  K  V  D  L  L  I  S  V  *  H  Y  *  S  K  K  Y  K  N  S  T  K  P  I  S  L  K  *  L  C  T  S  T  Q  C  T  F  F  D  F  Y  V  F  G  S  A  S  E  I  R  E  G  I  R  K  *  R  I  K  P  S  Q  V  K  F  R  Q  P  I  N  *  T  T  K  I  P  Q  L  F  L  Y  T  N  T  T  R  H  S  Y  I  L  I  L  P  V  S  T  F  N  N  E  F  Y  I  K  Y  N  *  V </second_frame>
            <third_frame>   I  *  S  P  S  E  Q  R  R  S  D  E  S  H  K  R  S  D  G  Q  R  E  K  S  K  *  *  E  N  K  S  Q  R  S  *  R  N  G  K  K  S  Y  R  R  R  W  I  F  S  S  Q  F  D  T  T  N  Q  R  S  T  R  I  Q  L  N  Q  L  A  *  N  D  Y  A  Q  A  R  S  V  L  S  L  I  F  M  F  L  V  A  Q  A  K  S  G  K  G  L  E  S  E  E  S  N  P  H  R  *  N  S  D  N  Q  S  T  E  L  L  R  F  P  N  Y  F  C  T  R  I  R  Q  D  T  V  I  Y  *  F  C  Q  F  Q  L  S  T  M  S  F  I  L  S  I  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95469" stop="95663"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYEVQVSKEEVTKAIKEVMDKEKKANNRRIRAKEVREMAKKAIEEGGSSHLSLTLLIKEVQEFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="89616" e_stop="89965"/>
            <exon e_start="90102" e_stop="90391"/>
            <exon e_start="91556" e_stop="91597"/>
            <exon e_start="91774" e_stop="91820"/>
            <exon e_start="93227" e_stop="93259"/>
            <exon e_start="96296" e_stop="96333"/>
            <exon e_start="96772" e_stop="96785"/>
            <exon e_start="102684" e_stop="102712"/>
            <exon e_start="103475" e_stop="103563"/>
            <exon e_start="103693" e_stop="104110"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="1.000" e_score="0.966"/>
          <exon-intron don_prob="0.000" acc_prob="0.744" e_score="0.973"/>
          <exon-intron don_prob="0.000" acc_prob="0.855" e_score="0.571"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="0.617"/>
          <exon-intron don_prob="0.997" acc_prob="0.561" e_score="0.424"/>
          <exon-intron don_prob="0.989" acc_prob="0.836" e_score="0.579"/>
          <exon-intron don_prob="0.000" acc_prob="0.942" e_score="0.714"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.621"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="89616" e_stop="89965" e_length="350"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89966" i_stop="90101" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="90102" e_stop="90391" e_length="290"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.744">
            <gDNA_intron_boundary i_start="90392" i_stop="91555" i_length="1164"/>
          </intron>
          <exon e_serial="3" e_score="0.571">
            <gDNA_exon_boundary e_start="91556" e_stop="91597" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.855">
            <gDNA_intron_boundary i_start="91598" i_stop="91773" i_length="176"/>
          </intron>
          <exon e_serial="4" e_score="0.617">
            <gDNA_exon_boundary e_start="91774" e_stop="91820" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="91821" i_stop="93226" i_length="1406"/>
          </intron>
          <exon e_serial="5" e_score="0.424">
            <gDNA_exon_boundary e_start="93227" e_stop="93259" e_length="33"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.561">
            <gDNA_intron_boundary i_start="93260" i_stop="96295" i_length="3036"/>
          </intron>
          <exon e_serial="6" e_score="0.579">
            <gDNA_exon_boundary e_start="96296" e_stop="96333" e_length="38"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.836">
            <gDNA_intron_boundary i_start="96334" i_stop="96771" i_length="438"/>
          </intron>
          <exon e_serial="7" e_score="0.714">
            <gDNA_exon_boundary e_start="96772" e_stop="96785" e_length="14"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.942">
            <gDNA_intron_boundary i_start="96786" i_stop="102683" i_length="5898"/>
          </intron>
          <exon e_serial="8" e_score="0.621">
            <gDNA_exon_boundary e_start="102684" e_stop="102712" e_length="29"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="102713" i_stop="103474" i_length="762"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="103475" e_stop="103563" e_length="89"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="103564" i_stop="103692" i_length="129"/>
          </intron>
          <exon e_serial="10" e_score="0.978">
            <gDNA_exon_boundary e_start="103693" e_stop="104110" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89616" stop="89965"/>
              <exon start="90102" stop="90391"/>
              <exon start="91556" stop="91597"/>
              <exon start="91774" stop="91820"/>
              <exon start="93227" stop="93259"/>
              <exon start="96296" stop="96333"/>
              <exon start="96772" stop="96785"/>
              <exon start="102684" stop="102712"/>
              <exon start="103475" stop="103563"/>
              <exon start="103693" stop="104110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89616" stop="89965"/>
              <exon start="90102" stop="90389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90188" stop="90391"/>
              <exon start="91556" stop="91597"/>
              <exon start="91774" stop="91820"/>
              <exon start="93227" stop="93259"/>
              <exon start="96296" stop="96333"/>
              <exon start="96772" stop="96785"/>
              <exon start="102684" stop="102712"/>
              <exon start="103475" stop="103563"/>
              <exon start="103693" stop="103968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTAACATTATCGTGATTTGGTTCACGTGAAAAAAACCAAGCCCACAATATCTAAAATATGTATATATATATTAGCTACTTTAAGCTTCAATGACATTTTAGTTCTTGTATTATTACATCTCTATTTTTGTGTTCTTAAACATGATGACAACAACAAGTGTTCTTTCTAGTGGATTCAACCACTCAACCCTCCCTCAATCTTACGTTCGACCTGAATCTCAAAGACCTTGCATGTCTGAAGTTGTTGATAGCGACGATCTTGTCCCAGTCATTGATATGTCTTGTACTGATAGGAACGTTATCGTTCATCAAATCGGTGAAGCTTGTCGTCTTTATGGGTTTTTTCAG : GTGATAAATCACGGTGTGTCGAAGAAGGCGATGGATGAAATGTTAGGGGTAAGTCATGAATTTTTTAAGCTACCAGTTGAAGAAAAGATGAAATTGTATTCTGATGATCCATCTAAGACTATGAGATTATCAACTAGTTTTAATGTTAAGAAGGAAACTGTTCATAATTGGAGAGATTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTTAT : ATTTGAGTCATTGGACCAAGCCTCTCATGTAACTGAGGAATC : GTAAAGGTTTGTTAGAAACAATCTCTCCACCTGAGGATAGGGATAAG : GCTGTAGCCGACATCCCTAATGGACAGCTGCAC : AAACAGAGTTAAACTTTGTTTTGATACCATTACTTGCT : GATAAAAACGAAAT : TCAAATATCGTCTTGAATTTTGAAACAGG : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGCCTAATGCCTTTGTCATCAATCTTGGTGATCAATTGGAG : GCGTTGAGTAATGGGAAGTATAAAAGTATATGGCATAGAGCTATTGTAAATTCAGACAAAGCAAGGATGTCTGTGGCTTCTTTTCTCTGTCCCAATGATTGTTCCATTATCAGTGCTCCAAAAACCTTAACTGAAGATGGATCTTCTGCAATTTATCGAGATTTCACTTATGCTGAATATTATGAAAAATTCTGGAGCAGGAATTTAGATCAGGAATATTGTTTAGAACTTTTTAAGAACGATGGAACCTAGTACTTGTATGAGTTTATTACTTTTGTATCGACCTAAGTGTGGTTGTCACACAATTATGTTAGGAAACAATCACTTGATATAGTTCAGATATGAAATTCGCAAAAAAAAAAATGATACTTCAAGTATGTAAAACTTTTTTTGTTCTTTTTCTCTGGCATTATCATCT</gDNA_template>
            <first_frame> *  L  T  L  S  *  F  G  S  R  E  K  N  Q  A  H  N  I  *  N  M  Y  I  Y  I  S  Y  F  K  L  Q  *  H  F  S  S  C  I  I  T  S  L  F  L  C  S  *  T  *  *  Q  Q  Q  V  F  F  L  V  D  S  T  T  Q  P  S  L  N  L  T  F  D  L  N  L  K  D  L  A  C  L  K  L  L  I  A  T  I  L  S  Q  S  L  I  C  L  V  L  I  G  T  L  S  F  I  K  S  V  K  L  V  V  F  M  G  F  F  R :   *  *  I  T  V  C  R  R  R  R  W  M  K  C  *  G  *  V  M  N  F  L  S  Y  Q  L  K  K  R  *  N  C  I  L  M  I  H  L  R  L  *  D  Y  Q  L  V  L  M  L  R  R  K  L  F  I  I  G  E  I  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  S  L   : Y  L  S  H  W  T  K  P  L  M  *  L  R  N   : R  K  G  L  L  E  T  I  S  P  P  E  D  R  D  K  :  A  V  A  D  I  P  N  G  Q  L  H  :  K  Q  S  *  T  L  F  *  Y  H  Y  L  L :   I  K  T  K   : F  K  Y  R  L  E  F  *  N  R  :  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  S  L  M  P  L  S  S  I  L  V  I  N  W  R :   R  *  V  M  G  S  I  K  V  Y  G  I  E  L  L  *  I  Q  T  K  Q  G  C  L  W  L  L  F  S  V  P  M  I  V  P  L  S  V  L  Q  K  P  *  L  K  M  D  L  L  Q  F  I  E  I  S  L  M  L  N  I  M  K  N  S  G  A  G  I  *  I  R  N  I  V  *  N  F  L  R  T  M  E  P  S  T  C  M  S  L  L  L  L  Y  R  P  K  C  G  C  H  T  I  M  L  G  N  N  H  L  I  *  F  R  Y  E  I  R  K  K  K  N  D  T  S  S  M  *  N  F  F  C  S  F  S  L  A  L  S  S </first_frame>
            <second_frame>  N  *  H  Y  R  D  L  V  H  V  K  K  T  K  P  T  I  S  K  I  C  I  Y  I  L  A  T  L  S  F  N  D  I  L  V  L  V  L  L  H  L  Y  F  C  V  L  K  H  D  D  N  N  K  C  S  F  *  W  I  Q  P  L  N  P  P  S  I  L  R  S  T  *  I  S  K  T  L  H  V  *  S  C  *  *  R  R  S  C  P  S  H  *  Y  V  L  Y  *  *  E  R  Y  R  S  S  N  R  *  S  L  S  S  L  W  V  F  S   : G  D  K  S  R  C  V  E  E  G  D  G  *  N  V  R  G  K  S  *  I  F  *  A  T  S  *  R  K  D  E  I  V  F  *  *  S  I  *  D  Y  E  I  I  N  *  F  *  C  *  E  G  N  C  S  *  L  E  R  L  S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  A  Y  :  I  *  V  I  G  P  S  L  S  C  N  *  G  I  :  V  K  V  C  *  K  Q  S  L  H  L  R  I  G  I  R :   L  *  P  T  S  L  M  D  S  C  T :   N  R  V  K  L  C  F  D  T  I  T  C   : *  *  K  R  N  :  S  N  I  V  L  N  F  E  T  G :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  S  A  *  C  L  C  H  Q  S  W  *  S  I  G   : G  V  E  *  W  E  V  *  K  Y  M  A  *  S  Y  C  K  F  R  Q  S  K  D  V  C  G  F  F  S  L  S  Q  *  L  F  H  Y  Q  C  S  K  N  L  N  *  R  W  I  F  C  N  L  S  R  F  H  L  C  *  I  L  *  K  I  L  E  Q  E  F  R  S  G  I  L  F  R  T  F  *  E  R  W  N  L  V  L  V  *  V  Y  Y  F  C  I  D  L  S  V  V  V  T  Q  L  C  *  E  T  I  T  *  Y  S  S  D  M  K  F  A  K  K  K  M  I  L  Q  V  C  K  T  F  F  V  L  F  L  W  H  Y  H   </second_frame>
            <third_frame>   I  N  I  I  V  I  W  F  T  *  K  K  P  S  P  Q  Y  L  K  Y  V  Y  I  Y  *  L  L  *  A  S  M  T  F  *  F  L  Y  Y  Y  I  S  I  F  V  F  L  N  M  M  T  T  T  S  V  L  S  S  G  F  N  H  S  T  L  P  Q  S  Y  V  R  P  E  S  Q  R  P  C  M  S  E  V  V  D  S  D  D  L  V  P  V  I  D  M  S  C  T  D  R  N  V  I  V  H  Q  I  G  E  A  C  R  L  Y  G  F  F  Q  :  V  I  N  H  G  V  S  K  K  A  M  D  E  M  L  G  V  S  H  E  F  F  K  L  P  V  E  E  K  M  K  L  Y  S  D  D  P  S  K  T  M  R  L  S  T  S  F  N  V  K  K  E  T  V  H  N  W  R  D  Y  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  E  L  I :   F  E  S  L  D  Q  A  S  H  V  T  E  E  S :   *  R  F  V  R  N  N  L  S  T  *  G  *  G  *   : G  C  S  R  H  P  *  W  T  A  A   : Q  T  E  L  N  F  V  L  I  P  L  L  A  :  D  K  N  E  I :   Q  I  S  S  *  I  L  K  Q   : V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  Q  P  N  A  F  V  I  N  L  G  D  Q  L  E  :  A  L  S  N  G  K  Y  K  S  I  W  H  R  A  I  V  N  S  D  K  A  R  M  S  V  A  S  F  L  C  P  N  D  C  S  I  I  S  A  P  K  T  L  T  E  D  G  S  S  A  I  Y  R  D  F  T  Y  A  E  Y  Y  E  K  F  W  S  R  N  L  D  Q  E  Y  C  L  E  L  F  K  N  D  G  T  *  Y  L  Y  E  F  I  T  F  V  S  T  *  V  W  L  S  H  N  Y  V  R  K  Q  S  L  D  I  V  Q  I  *  N  S  Q  K  K  K  *  Y  F  K  Y  V  K  L  F  L  F  F  F  S  G  I  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89720" stop="89965"/>
                    <exon start="90102" stop="90391"/>
                    <exon start="91556" stop="91597"/>
                    <exon start="91774" stop="91777"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLYYYISIFVFLNMMTTTSVLSSGFNHSTLPQSYVRPESQRPCMSEVVDSDDLVPVIDMSCTDRNVIVHQIGEACRLYGFFQVINHGVSKKAMDEMLGVSHEFFKLPVEEKMKLYSDDPSKTMRLSTSFNVKKETVHNWRDYLFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFELIFESLDQASHVTEES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102700" stop="102712"/>
                    <exon start="103475" stop="103563"/>
                    <exon start="103693" stop="103944"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILKQVFFFFFFFFFFFFFFFQPNAFVINLGDQLEALSNGKYKSIWHRAIVNSDKARMSVASFLCPNDCSIISAPKTLTEDGSSAIYRDFTYAEYYEKFWSRNLDQEYCLELFKNDGT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="89616" e_stop="89965"/>
            <exon e_start="90102" e_stop="90392"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="1.000" e_score="0.966"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="89616" e_stop="89965" e_length="350"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89966" i_stop="90101" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="90102" e_stop="90392" e_length="291"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89616" stop="89965"/>
              <exon start="90102" stop="90392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89616" stop="89965"/>
              <exon start="90102" stop="90389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362964" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTAACATTATCGTGATTTGGTTCACGTGAAAAAAACCAAGCCCACAATATCTAAAATATGTATATATATATTAGCTACTTTAAGCTTCAATGACATTTTAGTTCTTGTATTATTACATCTCTATTTTTGTGTTCTTAAACATGATGACAACAACAAGTGTTCTTTCTAGTGGATTCAACCACTCAACCCTCCCTCAATCTTACGTTCGACCTGAATCTCAAAGACCTTGCATGTCTGAAGTTGTTGATAGCGACGATCTTGTCCCAGTCATTGATATGTCTTGTACTGATAGGAACGTTATCGTTCATCAAATCGGTGAAGCTTGTCGTCTTTATGGGTTTTTTCAG : GTGATAAATCACGGTGTGTCGAAGAAGGCGATGGATGAAATGTTAGGGGTAAGTCATGAATTTTTTAAGCTACCAGTTGAAGAAAAGATGAAATTGTATTCTGATGATCCATCTAAGACTATGAGATTATCAACTAGTTTTAATGTTAAGAAGGAAACTGTTCATAATTGGAGAGATTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTTATG</gDNA_template>
            <first_frame> *  L  T  L  S  *  F  G  S  R  E  K  N  Q  A  H  N  I  *  N  M  Y  I  Y  I  S  Y  F  K  L  Q  *  H  F  S  S  C  I  I  T  S  L  F  L  C  S  *  T  *  *  Q  Q  Q  V  F  F  L  V  D  S  T  T  Q  P  S  L  N  L  T  F  D  L  N  L  K  D  L  A  C  L  K  L  L  I  A  T  I  L  S  Q  S  L  I  C  L  V  L  I  G  T  L  S  F  I  K  S  V  K  L  V  V  F  M  G  F  F  R :   *  *  I  T  V  C  R  R  R  R  W  M  K  C  *  G  *  V  M  N  F  L  S  Y  Q  L  K  K  R  *  N  C  I  L  M  I  H  L  R  L  *  D  Y  Q  L  V  L  M  L  R  R  K  L  F  I  I  G  E  I  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  S  L   </first_frame>
            <second_frame>  N  *  H  Y  R  D  L  V  H  V  K  K  T  K  P  T  I  S  K  I  C  I  Y  I  L  A  T  L  S  F  N  D  I  L  V  L  V  L  L  H  L  Y  F  C  V  L  K  H  D  D  N  N  K  C  S  F  *  W  I  Q  P  L  N  P  P  S  I  L  R  S  T  *  I  S  K  T  L  H  V  *  S  C  *  *  R  R  S  C  P  S  H  *  Y  V  L  Y  *  *  E  R  Y  R  S  S  N  R  *  S  L  S  S  L  W  V  F  S   : G  D  K  S  R  C  V  E  E  G  D  G  *  N  V  R  G  K  S  *  I  F  *  A  T  S  *  R  K  D  E  I  V  F  *  *  S  I  *  D  Y  E  I  I  N  *  F  *  C  *  E  G  N  C  S  *  L  E  R  L  S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  A  Y  </second_frame>
            <third_frame>   I  N  I  I  V  I  W  F  T  *  K  K  P  S  P  Q  Y  L  K  Y  V  Y  I  Y  *  L  L  *  A  S  M  T  F  *  F  L  Y  Y  Y  I  S  I  F  V  F  L  N  M  M  T  T  T  S  V  L  S  S  G  F  N  H  S  T  L  P  Q  S  Y  V  R  P  E  S  Q  R  P  C  M  S  E  V  V  D  S  D  D  L  V  P  V  I  D  M  S  C  T  D  R  N  V  I  V  H  Q  I  G  E  A  C  R  L  Y  G  F  F  Q  :  V  I  N  H  G  V  S  K  K  A  M  D  E  M  L  G  V  S  H  E  F  F  K  L  P  V  E  E  K  M  K  L  Y  S  D  D  P  S  K  T  M  R  L  S  T  S  F  N  V  K  K  E  T  V  H  N  W  R  D  Y  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  E  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89720" stop="89965"/>
                    <exon start="90102" stop="90392"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLYYYISIFVFLNMMTTTSVLSSGFNHSTLPQSYVRPESQRPCMSEVVDSDDLVPVIDMSCTDRNVIVHQIGEACRLYGFFQVINHGVSKKAMDEMLGVSHEFFKLPVEEKMKLYSDDPSKTMRLSTSFNVKKETVHNWRDYLFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFELM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="101673" e_stop="102159"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="101673" e_stop="102159" e_length="487"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101673" stop="102159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAGGCGATAAATAATATGCTTATGAACATAATTTCCAGTAAAACGATTTCATTTTCATTGCTTTTGTGCTCGTTCTTTTCTTACACTTTTGCTTACAATTTCATTATTCGTAATAACTGTCCTTTTACCATATGGCCTGGTACACTGGCTGGTGCGGGAACTCCTCCACTTCCCGCGACTGGCTTTCGATTAGATGCAGGGCAAAGCATCACAATTCCAAGTGTAGCTGGTTGGTCAGGGAGAATATGGGCTAGAACTGGCTGCACTTTTGATGCATCAGGTATTGGCTCGTGTCAAACAGGCGATTGTGGTGGGAAGCTTGAATGTAGTGGGCTTGGTGCCACGCCACCTGCCTCCCTCTTCGAGATAACTCTTGGCGTGGGAGACAACAAAGATTTCTATGATGTTAGTATTGTTGATGGCTATAATTTACCAATGGTTGCTCTACCTCAAGGCGTCAACGGGGGATGCAATGCCACTGGCT</gDNA_template>
            <first_frame> K  K  A  I  N  N  M  L  M  N  I  I  S  S  K  T  I  S  F  S  L  L  L  C  S  F  F  S  Y  T  F  A  Y  N  F  I  I  R  N  N  C  P  F  T  I  W  P  G  T  L  A  G  A  G  T  P  P  L  P  A  T  G  F  R  L  D  A  G  Q  S  I  T  I  P  S  V  A  G  W  S  G  R  I  W  A  R  T  G  C  T  F  D  A  S  G  I  G  S  C  Q  T  G  D  C  G  G  K  L  E  C  S  G  L  G  A  T  P  P  A  S  L  F  E  I  T  L  G  V  G  D  N  K  D  F  Y  D  V  S  I  V  D  G  Y  N  L  P  M  V  A  L  P  Q  G  V  N  G  G  C  N  A  T  G  </first_frame>
            <second_frame>  K  R  R  *  I  I  C  L  *  T  *  F  P  V  K  R  F  H  F  H  C  F  C  A  R  S  F  L  T  L  L  L  T  I  S  L  F  V  I  T  V  L  L  P  Y  G  L  V  H  W  L  V  R  E  L  L  H  F  P  R  L  A  F  D  *  M  Q  G  K  A  S  Q  F  Q  V  *  L  V  G  Q  G  E  Y  G  L  E  L  A  A  L  L  M  H  Q  V  L  A  R  V  K  Q  A  I  V  V  G  S  L  N  V  V  G  L  V  P  R  H  L  P  P  S  S  R  *  L  L  A  W  E  T  T  K  I  S  M  M  L  V  L  L  M  A  I  I  Y  Q  W  L  L  Y  L  K  A  S  T  G  D  A  M  P  L  A </second_frame>
            <third_frame>   K  G  D  K  *  Y  A  Y  E  H  N  F  Q  *  N  D  F  I  F  I  A  F  V  L  V  L  F  L  H  F  C  L  Q  F  H  Y  S  *  *  L  S  F  Y  H  M  A  W  Y  T  G  W  C  G  N  S  S  T  S  R  D  W  L  S  I  R  C  R  A  K  H  H  N  S  K  C  S  W  L  V  R  E  N  M  G  *  N  W  L  H  F  *  C  I  R  Y  W  L  V  S  N  R  R  L  W  W  E  A  *  M  *  W  A  W  C  H  A  T  C  L  P  L  R  D  N  S  W  R  G  R  Q  Q  R  F  L  *  C  *  Y  C  *  W  L  *  F  T  N  G  C  S  T  S  R  R  Q  R  G  M  Q  C  H  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0304I22.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101673" stop="102158"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKAINNMLMNIISSKTISFSLLLCSFFSYTFAYNFIIRNNCPFTIWPGTLAGAGTPPLPATGFRLDAGQSITIPSVAGWSGRIWARTGCTFDASGIGSCQTGDCGGKLECSGLGATPPASLFEITLGVGDNKDFYDVSIVDGYNLPMVALPQGVNGGCNATG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="106051" PGL_stop="106711"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106051" e_stop="106711"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="106051" e_stop="106711" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106051" stop="106711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106052" stop="106711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCACCCCAACCCCCATACCCATACACCAGTGGTTATCTTCTTCCCCCATCATTCTAATGATTTCAAAATTCTTAGTATCAGTGGTTATCTTCTTCCCCCACCATTCTAATGGTTTCAAAATTCTTAGTGTTTTGTTTCATTTATAATTTTTCGAATAGATTCTTTTCCCCATTTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAATAAAAAAGCTGATGAAAAAAAATTGTCGGATTAAAGATGGAACTGTACAGGGAAGGGGGGGGCGCCATTAATGGAGTTAGAGGAAATGTAAGTTTTGTTCCAGTTGAAGGCAGGAAAGTGGGTGTTTAGGTTTTACTTTTTTTTTTCATTTGTTTTACTTTAAAATAATTTTTATTTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGGTTCAAATTCAAAATGGTTGAAGTGTTCAATAGATAGTACGTCTAGTTAAGGTGTCTAAATGAATAATTGGGACAAATTTAAGTGACCGCATATGATTTTGGCCTACTATTTTTATAC</gDNA_template>
            <first_frame> L  T  P  T  P  I  P  I  H  Q  W  L  S  S  S  P  I  I  L  M  I  S  K  F  L  V  S  V  V  I  F  F  P  H  H  S  N  G  F  K  I  L  S  V  L  F  H  L  *  F  F  E  *  I  L  F  P  I  F  L  Y  L  K  N  E  M  K  *  K  V  I  I  N  K  K  A  D  E  K  K  L  S  D  *  R  W  N  C  T  G  K  G  G  A  P  L  M  E  L  E  E  M  *  V  L  F  Q  L  K  A  G  K  W  V  F  R  F  Y  F  F  F  S  F  V  L  L  *  N  N  F  Y  F  F  L  L  Y  N  I  M  F  K  *  F  F  G  L  K  N  N  T  C  H  Y  L  I  G  Q  I  D  M  S  A  R  V  Y  F  T  H  S  L  F  F  V  Y  S  R  K  N  V  Q  M  V  Q  I  Q  N  G  *  S  V  Q  *  I  V  R  L  V  K  V  S  K  *  I  I  G  T  N  L  S  D  R  I  *  F  W  P  T  I  F  I  </first_frame>
            <second_frame>  S  P  Q  P  P  Y  P  Y  T  S  G  Y  L  L  P  P  S  F  *  *  F  Q  N  S  *  Y  Q  W  L  S  S  S  P  T  I  L  M  V  S  K  F  L  V  F  C  F  I  Y  N  F  S  N  R  F  F  S  P  F  F  S  T  *  K  T  R  *  S  K  K  L  *  L  I  K  K  L  M  K  K  N  C  R  I  K  D  G  T  V  Q  G  R  G  G  R  H  *  W  S  *  R  K  C  K  F  C  S  S  *  R  Q  E  S  G  C  L  G  F  T  F  F  F  H  L  F  Y  F  K  I  I  F  I  F  F  Y  F  I  I  *  C  L  N  N  F  L  D  *  K  I  T  H  V  I  I  *  L  V  K  L  T  C  Q  R  E  C  I  S  H  I  L  Y  F  L  F  I  L  E  K  M  F  K  W  F  K  F  K  M  V  E  V  F  N  R  *  Y  V  *  L  R  C  L  N  E  *  L  G  Q  I  *  V  T  A  Y  D  F  G  L  L  F  L  Y </second_frame>
            <third_frame>   H  P  N  P  H  T  H  T  P  V  V  I  F  F  P  H  H  S  N  D  F  K  I  L  S  I  S  G  Y  L  L  P  P  P  F  *  W  F  Q  N  S  *  C  F  V  S  F  I  I  F  R  I  D  S  F  P  H  F  S  L  P  K  K  R  D  E  V  K  S  Y  N  *  *  K  S  *  *  K  K  I  V  G  L  K  M  E  L  Y  R  E  G  G  G  A  I  N  G  V  R  G  N  V  S  F  V  P  V  E  G  R  K  V  G  V  *  V  L  L  F  F  F  I  C  F  T  L  K  *  F  L  F  F  F  T  L  *  Y  N  V  *  I  I  F  W  I  K  K  *  H  M  S  L  F  D  W  S  N  *  H  V  S  A  S  V  F  H  T  F  S  I  F  C  L  F  S  K  K  C  S  N  G  S  N  S  K  W  L  K  C  S  I  D  S  T  S  S  *  G  V  *  M  N  N  W  D  K  F  K  *  P  H  M  I  L  A  Y  Y  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0304I22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 185 chains have been computed
$ 
$ memory statistics:
$ 485208 bytes spliced alignments in total
$ 159 spliced alignments have been stored
$ 3051 bytes was the average size of a spliced alignment
$ 30600 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1530 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 195 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 17:24:48
-->
