<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 17:23:21"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352151" ref_strand="+" ref_description="SGN-E352151 [cTOS-13-O11]">
      <seq>aaggcggacaagtcaacaattgggaccaagatgaaggggaactagctaagaattggaatgaggaaggcacttgcgtcaatgaagagaaacagagttttcagccatctcctgatgttgagggtacaacgcaccaaacagactacatcccggaccctgttatggatgaagctgaatggtctgatggttggaaataactactcagtttattatgctagtgggtgaatcttttggatgttacattgaacctcaaaactcaaagaaccttttcagattctgcactagaatgtgtggttattgcattttgaaaaaattcaagcgcaggaatgcctgcactttagctacatgtatagatgctatctatctatctatatatttaaaatggtttgggaaattcaagctcaaaatttatgtaaaagctgataccttgaaacctatattccatgaaacgtactgcaatgagtgttatcagagcactttaaacctgatgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4529" stop="3439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4229" g_stop="3744" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="489" polyA_stop="504"/>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E352151" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4229" e_stop="3744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCGGACAAGTCAACAATTGGGACCAAGATGAAGGGGAACTAGCTAAGAATTGGAATGAGGAAGGCACTTGCGTCAATGAAGAGAAACAGAGTTTTCAGCCATCTCCTGATGTTGAGGGTACAACGCACCAAACAGACTACATCCCGGACCCTGTTATGGATGAAGCTGAATGGTCTGATGGTTGGAAATAACTACTCAGTTTATTATGCTAGTGGGTGAATCTTTTGGATGTTACATTGAACCTCAAAACTCAAAGAACCTTTTCAGATTCTGCACTAGAATGTGTGGTTATTGCATTTTGAAAAAATTCAAGCGCAGGAATGCCTGCACTTTAGCTACATGTATAGATGCTATCTATCTATCTATATATTTAAAATGGTTTGGGAAATTCAAGCTCAAAATTTATGTAAAAGCTGATACCTTGAAACCTATATTCCATGAAACGTACTGCAATGAGTGTTATCAGAGCACTTTAAACCTGAT</genome_strand>
        <mrna_strand>AAGGCGGACAAGTCAACAATTGGGACCAAGATGAAGGGGAACTAGCTAAGAATTGGAATGAGGAAGGCACTTGCGTCAATGAAGAGAAACAGAGTTTTCAGCCATCTCCTGATGTTGAGGGTACAACGCACCAAACAGACTACATCCCGGACCCTGTTATGGATGAAGCTGAATGGTCTGATGGTTGGAAATAACTACTCAGTTTATTATGCTAGTGGGTGAATCTTTTGGATGTTACATTGAACCTCAAAACTCAAAGAACCTTTTCAGATTCTGCACTAGAATGTGTGGTTATTGCATTTTGAAAAAATTCAAGCGCAGGAATGCCTGCACTTTAGCTACATGTATAGATGCTATCTATCTATCTATATATTTAAAATGGTTTGGGAAATTCAAGCTCAAAATTTATGTAAAAGCTGATACCTTGAAACCTATATTCCATGAAACGTACTGCAATGAGTGTTATCAGAGCACTTTAAACCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352256" ref_strand="+" ref_description="SGN-E352256 [cTOS-13-F12]">
      <seq>aaggcggacaagtcaacaattgggaccaagatgaaggggaactagctaagaattggaatgaggaaggcacttgcgtcaatgaagagaaacagagttttcagccatctcctgatgttgagggtacaacgcaccaaacagactacatcccggaccctgttatggatgaagctgaatggtctgatggttggaaataactactcagtttattatgctagtgggtgaatcttttggatgttacattgaacctcaaaactcaaagaaccttttcagattctgcactagaatgtgtggttattgcattttgaaaaaattcaagcgcaggaatgcctgcactttagctacatgtatagatgctatctatctatctatatatttaaaatggtttgggaaattcaagctcaaaatttatgtaaaagctgataccttgaaacctatattccatgaaacgtactgcaatgagtgttatcagagcactttaaacctgatgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4529" stop="3439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4229" g_stop="3744" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="489" polyA_stop="504"/>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E352256" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4229" e_stop="3744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCGGACAAGTCAACAATTGGGACCAAGATGAAGGGGAACTAGCTAAGAATTGGAATGAGGAAGGCACTTGCGTCAATGAAGAGAAACAGAGTTTTCAGCCATCTCCTGATGTTGAGGGTACAACGCACCAAACAGACTACATCCCGGACCCTGTTATGGATGAAGCTGAATGGTCTGATGGTTGGAAATAACTACTCAGTTTATTATGCTAGTGGGTGAATCTTTTGGATGTTACATTGAACCTCAAAACTCAAAGAACCTTTTCAGATTCTGCACTAGAATGTGTGGTTATTGCATTTTGAAAAAATTCAAGCGCAGGAATGCCTGCACTTTAGCTACATGTATAGATGCTATCTATCTATCTATATATTTAAAATGGTTTGGGAAATTCAAGCTCAAAATTTATGTAAAAGCTGATACCTTGAAACCTATATTCCATGAAACGTACTGCAATGAGTGTTATCAGAGCACTTTAAACCTGAT</genome_strand>
        <mrna_strand>AAGGCGGACAAGTCAACAATTGGGACCAAGATGAAGGGGAACTAGCTAAGAATTGGAATGAGGAAGGCACTTGCGTCAATGAAGAGAAACAGAGTTTTCAGCCATCTCCTGATGTTGAGGGTACAACGCACCAAACAGACTACATCCCGGACCCTGTTATGGATGAAGCTGAATGGTCTGATGGTTGGAAATAACTACTCAGTTTATTATGCTAGTGGGTGAATCTTTTGGATGTTACATTGAACCTCAAAACTCAAAGAACCTTTTCAGATTCTGCACTAGAATGTGTGGTTATTGCATTTTGAAAAAATTCAAGCGCAGGAATGCCTGCACTTTAGCTACATGTATAGATGCTATCTATCTATCTATATATTTAAAATGGTTTGGGAAATTCAAGCTCAAAATTTATGTAAAAGCTGATACCTTGAAACCTATATTCCATGAAACGTACTGCAATGAGTGTTATCAGAGCACTTTAAACCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356748" ref_strand="+" ref_description="SGN-E356748 [cTOS-21-D11]">
      <seq>aaggcggacaagtcaacaattgggaccaagatgaaggggaactagctaagaattggaatgaggaaggcacttgcgtcaatgaagagaaacagagttttcagccatctcctgatgttgagggtacaacgcaccaaacagactacatcccggaccctgttatggatgaagctgaatggtctgatggttggaaataactactcagtttattatgctagtgggtgaatcttttggatgttacattgaacctcaaaactcaaagaaccttttcagattctgcactagaatgtgtggttattgcattttgaaaaaattcaagcgcaggaatgcctgcactttagctacatgtatagatgctatctatctatctatatatttaaaatggtttgggaaattcaagctcaaaatttatgtaaaagctgataccttgaaacctatattccatgaaacgtactgcaatgagtgttatcagagcactttaaacctgatgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4529" stop="3439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4229" g_stop="3744" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="489" polyA_stop="502"/>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E356748" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4229" e_stop="3744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCGGACAAGTCAACAATTGGGACCAAGATGAAGGGGAACTAGCTAAGAATTGGAATGAGGAAGGCACTTGCGTCAATGAAGAGAAACAGAGTTTTCAGCCATCTCCTGATGTTGAGGGTACAACGCACCAAACAGACTACATCCCGGACCCTGTTATGGATGAAGCTGAATGGTCTGATGGTTGGAAATAACTACTCAGTTTATTATGCTAGTGGGTGAATCTTTTGGATGTTACATTGAACCTCAAAACTCAAAGAACCTTTTCAGATTCTGCACTAGAATGTGTGGTTATTGCATTTTGAAAAAATTCAAGCGCAGGAATGCCTGCACTTTAGCTACATGTATAGATGCTATCTATCTATCTATATATTTAAAATGGTTTGGGAAATTCAAGCTCAAAATTTATGTAAAAGCTGATACCTTGAAACCTATATTCCATGAAACGTACTGCAATGAGTGTTATCAGAGCACTTTAAACCTGAT</genome_strand>
        <mrna_strand>AAGGCGGACAAGTCAACAATTGGGACCAAGATGAAGGGGAACTAGCTAAGAATTGGAATGAGGAAGGCACTTGCGTCAATGAAGAGAAACAGAGTTTTCAGCCATCTCCTGATGTTGAGGGTACAACGCACCAAACAGACTACATCCCGGACCCTGTTATGGATGAAGCTGAATGGTCTGATGGTTGGAAATAACTACTCAGTTTATTATGCTAGTGGGTGAATCTTTTGGATGTTACATTGAACCTCAAAACTCAAAGAACCTTTTCAGATTCTGCACTAGAATGTGTGGTTATTGCATTTTGAAAAAATTCAAGCGCAGGAATGCCTGCACTTTAGCTACATGTATAGATGCTATCTATCTATCTATATATTTAAAATGGTTTGGGAAATTCAAGCTCAAAATTTATGTAAAAGCTGATACCTTGAAACCTATATTCCATGAAACGTACTGCAATGAGTGTTATCAGAGCACTTTAAACCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746197" ref_strand="+" ref_description="SGN-E746197 [GI|47104857]">
      <seq>ggacgatcagattgtttgtgtaaaagtgatttggtttaagtgttaagtagggttactttgctgtggtaattcattcatgtttactttctccatgaatcttaatacttggctattgtataataactttggttgaaagctgcagattcttcttgaaattcatcttaattactcatgggcacaatttcttataagtcggatgatgaatactcaactattactgacaaaggagacatcggatttgtcgactttgacaaatataaatcagccggtagctacaatccaaatgaagagagtgatatagttgttatatctgttccatttccgctggtagcaggaaaacctaaatcaggatttgttggggaaactgttgttgattcagtcacaatagagaataccaccaatgaaacccaggagctgtggtcaattaagatctataactcaaaacctgaggattcattcactctttctctgatgaaacctccaactgatagttctgatttgcaatatgttgaagaattcatggaatcctttagcttagaggatagaatgttacggccaggtcaaacacttacagtatggctgacttgtaaacccaaagaaattggattgcacacatcagctgtgcatttcaatgtgggtgatgacaccatagaaagattagtttttgtcttggctgaggataaggtttcccagtctctggcttcaaggaggccgttccacagagacagaaagaagaaagtaccagcagtagatgtttttgctgcaaatgcatttgttgtgggttcccgtcctacaagggctccaaatcgaggtttcagatacagacttccttcatatccaattccaggtgatattcgggaaatgatagagaacaaacaatttcctgatgttattggggaaggtttaagaagagacaattatattgcttattttagaactttactagcaattgaagaaatcaagatggaggaagacatgagggactatgatatgttgtcggtcaccatgaagcgcaaaggactacagttcttgtcccttgatgtcccagggctagccgagaggaggccatcacttgtttatggagattttatctttgcaaggctagcttctggagatgctagtgagatcaccccttaccagggttatatccaccgagttgaggcggaagaagtatatttgaagtttgatgaagaattccacatcaaccatgttcctggaaatctgtacaatgtgcaattttcattcaatcgtacgggtgtgcggaggttacatcaagccattgaagctacagaaagcttaaatggagaaattctctttccatcaggcatatccagaacgagaaatatacaagctgctagactggcacctaattcatgtatgcttaacaaggaacagacaactgcagttgaaaagattcttgggtgcaaaggaggggctccatatgttatccatgggcctcctggtacaggcaaaacaaggactcttatagaagctatcatccaggtacgtattatgaggaaagatgctcgagttcttgtctgtgcaccttcaaatagtgctgcagaccatatacttgagaaacttgtcagtcagcagaatgttgaagtgcaggacaatgagattcttaggttgaatgcactcacacgtcctttagatgatgtgaatcctagttaccttcgtttttgcaatgctgaagataattcttttaagtgcccccttctcagggaccttaaaagatatacggttattatatctacatatgctagtgcatgtcttctttattcagagggcatcaaacggggacacttctcccatattttcttggatgaggcaggacaggcatcagagcctgataccatggttcctctatcacatcttttaaagaaagagacagtcgttgtacttgctggtgacccacagcaacttggtcccattgttttctcaaaagatgctgaaaattatggattggcaacttcatatatggagaggttatttgaatgccagttatatggtgatctcaacgaaaattatgctaccagactagtaaggaattatcggtgtcatccggtaattctgcagcttccctcagaaatgttttatgaaggagagttgatcccatgtaaagaagataaaacttttacccagacttgggtggacctgcttccaaacaaggaatttccgttggttttcattggcatacagggttgtgatgaaagagaaggaagcaacccatcatggttcaacaggatcgaagcaagcaaggtggtagagatcatcagagatctgatagggaacaaaggtctgaaagaggaagatattggggtgataacaccttataggcagcaagtactgaaaataagaacagcccttgagagctttgagtgggctaatataaaggttggcagcgtagagcaattccaaggtcaggagagagaagttattatcatatcgaccgtccggtcgacgattcagcataatgacttcgacagaatccattacttaggattcttaagcaatccgagaaggttcaatgttgctgctacaagagccagatcattgcttgtagttgtcgggaatccacacatcatctgcaaggatcccttctggaacaagctttgtggtattgtgcagacaatgactcctacaagggctgcttcttacctgaaaaactggagatccctcaagaggatttcggacaagcaaataattggtttcaagagtattccggacaagcaaataattgggatgatgttggggcacaagtaaataactgggactgtgaaggagcagaagctaatgattgggaccaagaccaggtgggaaaagttaacaattgggaccaagaccaagacggacaagtcaacaattgggaccaagatgaaggggaactagctaagaattggaatgaggaaggcacttgcgtcaatgaagagaaacagagttttcagccatctcctgatgttgagggtacaacgcaccaaacagactacatcccggaccctgttatggatgaagctgaatggtctgatggttggaaataactactcagtttattatgctagtgggtgaatcttttggatgttacattgaacctcaaaactcaaagaaccttttcagattctgcactagaatgtgtggttattgcattttgaaaaaattcaagcgcaggaatgcctgcactttagctacatgtatagatgctatctatctatctatatatttaaaatggtttgggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9661" stop="3539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9361" g_stop="8393" g_length="969"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="969" r_length="969" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8392" i_stop="8318" i_length="75">
            <donor d_prob="0.362" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8317" g_stop="8147" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="970" r_stop="1140" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8146" i_stop="6280" i_length="1867">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6279" g_stop="4825" g_length="1455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1141" r_stop="2595" r_length="1455" r_score="0.999"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4824" i_stop="4483" i_length="342">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4482" g_stop="3827" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="2596" r_stop="3250" r_length="655" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E746197" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>3251</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9361" e_stop="8393"/>
          <exon e_start="8317" e_stop="8147"/>
          <exon e_start="6279" e_stop="4825"/>
          <exon e_start="4482" e_stop="3827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGATCAGATTGTTTGTGTAAAAGTGATTTGGTTTAAGTGTTAAGTAGGGTTACTTTGCTGTGGTAATTCATTCATGTTTACTTTCTCCATGAATCTTAATACTTGGCTATTGTATAATAACTTTGGTTGAAAGCTGCAGATTCTTCTTGAAATTCATCTTAATTACTCATGGGCACAATTTCTTATAAGTCGGATGATGAATACTCAACTATTACTGACAAAGGAGACATCGGATTTGTCGACTTTGACAAATATAAATCAGCTGGTAGCTACAATCCAAATGAAGAGAGTGATATAGTTGTTATATCTGTTCCATTTCCGCTGGTAGCAGGAAAACCTAAATCAGGATTTGTTGGGGAAACTGTTGTTGATTCAGTCACAATAGAGAATACCACCAATGAAACCCAGGAGCTGTGGTCAATTAAGATCTATAACTCAAAACCTGAGGATTCATTCACTCTTTCTCTGATGAAACCTCCAACTGATAGTTCTGATTTGCAATATGTTGAAGAATTCATGGAATCCTTTAGCTTAGAGGATAGAATGTTACGGCCAGGTCAAACACTTACAGTATGGCTGACTTGTAAACCCAAAGAAATTGGATTGCACACATCAGCTGTGCATTTCAATGTGGGTGATGACACCATAGAAAGATTAGTTTTTGTCTTGGCTGAGGATAAGGTTTCCCAGTCTCTGGCTTCAAGGAGGCCGTTCCACAGAGACAGAAAGAAGAAAGTACCAGCAGTAGATGTTTTTGCTGCAAATGCATTTGTTGTGGGTTCCCGTCCTACAAGGGCTCCAAATCGAGGTTTCAGATACAGACTTCCTTCATATCCAATTCCAGGTGATATACGGGAAATGATAGAGAACAAACAATTTCCTGATGTTATTGGGGAAGGTTTAAGAAGAGACAATTATATTGCTTATTTTAGAACTTTACTAGCAATTGAAGAAATCAAGATGGAGGTATTTGTTCAGATTTTGATTTGAAGTAAGACTTGATTTTGGGTAGCACTTATATCTTATAGTTTCTTGCATCAGGAAGACATGAGGGACTATGATATGTTGTCAGTCACCATGAAGCGCAAAGGACTACAGTTCTTGTCCCTTGATGTCCCAGGGCTAGCCGAGAGGAGGCCATCACTTGTTTATGGAGATTTTATCTTTGCAAGGCTAGCTTCTGGAGATGCTAGTGAGATCACCCCTTACCAGGTGCATTCATATTTGTGCTTTGTTTTATATCTTAAGCTGCTACTTGATAATATAAGCTCTCTTTACTGCATAATTTGGTAACAACTATTACAAATCCATTTTACCTGTAGATTTTCGAAGTTGCAAGGAATCATTTGATGTATTTGTACATGGCCAAATACATACGCAGCCCCTGAAACTCGGCTTGGATTTTTTTTAGCACCTCAACTTAGCCAAGACCATTTGAACACGCCATAGACTGTGTTTTTAGACCCTTGAATGGTAATCCCTAAGAAAACTAGGACGCGGGAAGCCGGGAACTTACATGCGGTTATCTGTCAAATATGACAAATAAGATAATTCCACGTAGCTTCTCATCAAACTAATGCAAGAAAAAGAAAAAAAAGGGCTTTTGAGCTGAAAAAGGAAACAAGAAGATGCAATAATTGTTAAGAAACTCCCGGAAAGCCAAAACTTCACAATCTCTCTGTATCATCTTATCCACCAGCTGAGATTCTTACCCTTCCAACATTAAAATTCTTCAGTCCTTCTCCTCCACCATCTATATTGATCAGCAACACCACTACTTCAAAGCTTCATTTCACCTCCCAGTTTGTCTCTATAAATTGTTGAGAAAACATGTAAACACGGGTCTACAAATTTCATCATAGACCACAATATCATCGAGAAAAAAGCAAAAAAGCTTGGTTTCGTTATTGCATCAAGAATTTCATTGTGATAAAATTTTATCATTGTAGTAGAATCTGTTAAGATTGATTCAGAGAATTTGAAGCATATTTGTGCAAGCATAGCCACAAACACAAGTATCTATCACCAAAAATTGCAAATTATTCCTTTTAGGCCATTTTCTCTGTCTTATAATGGTCAAGCTCCTACTGTGCATTAGCTACATGCGTTCCCAAGAAATATTTTAAAAGGATTGAAGACTTCCTCTTTCTTTGAGAACAACGATCTTAGAATCTTGTTCCAAATTTTCTCTGTTTCGGCAACTGGACTGTCTTTCTTTATCTTATGTTAAAAAAGATGGAAGAAAAAATTGATCTGTCAAGAAGAGGTCAGAGAAAAGAAAGAAGAAAGGGAGAATCACAGGAAAGAAATGTAAAAAGGTGATATTAGGAGTGGGCCTCATTTATTTCTGTTAAAGTCATTCTACGCACCTGATAAAAGTGAGAAACATATATAGATGATAGATTCATGTCAGCATAATGTGGTTAGTGATACAATTCAAGGGTACATGAAGTGTTAAAATAATGTTTAACTAAGTTAAGGTGCCAAAAGGAATTTTAAGCCAAGTGGGAGGGGCTATCTATGCATTGCCTTTATACATCCAAATCTCTGCTAGATAAGGTCCTTGTGTTGTCTTCTATTACCTTTAAAATCACACCTCTTGAAATAGTCATGTTGATCTTTACAACTATGGATGTCATGGTAGAACATCAACATTTCTATTTGTATTCTTCCTTGAGTCTCTTTTTATTTTGTTTCTGTTATTAAATTCATTTTCATCTATTTTACTAGAAAGGGTGACAACTTTTGTGATGCCTGGCTGCTATGTCTAGCTGTTGTTTGCTAAGTTGCATCTCAGTACAATCAATTGAAGGCCCGAGGTTCAAATACTTGGGGATGAGGAAATTCAATGGTTTCCAATATTTAGTCTTTAGGGAAATTAAGCTGTGCAATGAATGACACATGCATAGCACCCCCTTTATATGATACATGTTAAAAGTTACACTCTCAGTTATGCATATGAAGAATTTTAAAGGGAAAATGATTATATATCAGCAAGATTTTACTCATGAACTTGATAGATCAAAAGGAGAATAAATGTATTAACATAAACTTGGTGATTTTTGTGGTTCTTGGACAGGGTTATATCCACCGAGTTGAGGCGGAAGAAGTATATTTGAAGTTTGATGAAGAATTCCACATCAACCATGTTCCTGGAAATCTGTACAATGTGCAATTTTCATTCAATCGTACGGGTGTGCGGAGGTTACATCAAGCCATTGAAGCTACAGAAAGCTTAAATGGAGAAATTCTCTTTCCATCAGGCATATCCAGAACGAGAAATATACAAGCTGCTAGACTGGCACCTAATTCATGTATGCTTAACAAGGAACAAACAACTGCAGTTGAAAAGATTCTTGGGTGCAAAGGAGGGGCTCCATATGTTATCCATGGGCCTCCTGGTACAGGCAAAACAAGGACTCTTATAGAAGCTATCATCCAGGTACGTATTATGAGGAAAGATGCTCGAGTTCTTGTCTGTGCACCTTCAAATAGTGCTGCAGACCATATACTTGAGAAACTTGTCAGTCAGCAGAATGTTGAAGTGCAGGACAATGAGATTCTTAGGTTGAATGCACTCACACGTCCTTTAGATGATGTGAATCCTAGTTACCTTCGTTTTTGCAATGCTGAAGATAATTCTTTTAAGTGCCCCCTTCTCAGGGACCTTAAAAGATATACGGTTATTATATCTACATATGCTAGTGCATGTCTTCTTTATTCAGAGGGCATCAAACGGGGACACTTCTCTCATATTTTCTTGGATGAGGCAGGACAGGCATCAGAGCCTGATACCATGGTTCCTCTATCACATCTTTTAAAGAAAGAGACAGTCGTTGTACTTGCTGGTGACCCACAGCAACTTGGTCCCATTGTTTTCTCAAAAGATGCTGAAAATTATGGATTGGCAACTTCATATATGGAGAGGTTATTTGAATGCCAGTTATATGGTGATCTCAACGAAAATTATGCTACCAGACTAGTAAGGAATTATCGGTGTCATCCGGTAATTCTGCAGCTTCCCTCAGAAATGTTTTATGAAGGAGAGTTGATCCCATGTAAAGAAGATAAAACTTTTACCCAGACTTGGGTGGACCTGCTTCCAAACAAGGAATTTCCGTTGGTTTTCATTGGCATACAGGGTTGTGATGAAAGAGAAGGAAGCAACCCATCATGGTTCAACAGGATCGAAGCAAGCAAGGTGGTAGAGATCATCAGAGATCTGATAGGGAACAAAGGTCTGAAAGAGGAAGATATTGGGGTGATAACACCTTATAGGCAGCAAGTACTGAAAATAAGAACAGCCCTTGAGAGCTTTGAGTGGGCTAATATAAAGGTTGGCAGCGTAGAGCAATTCCAAGGTCAGGAGAGAGAAGTTATTATCATATCGACCGTCCGGTCGACGATTCAGCATAATGACTTCGACAGAATCCATTACTTAGGATTCTTAAGCAATCCGAGAAGGTTCAATGTTGCTGCTACAAGAGCCAGATCATTGCTTGTAGTTGTCGGGAATCCACACATCATCTGCAAGGTGATTCTGTATTTTTTTCTGCTACTGCATTTGTAGTACCTACGTAGATTTGATATGCCATAGTTTTTTGTTTTTTTTTTTGATATGCCATAGTAAAGGTGGAGTTTCTGTCTATCTATTTCTGAAAATTTTCCTTATACTGGTGATACCTTTTGTTGGCATTTTTGCAGGTTATACCTATTGAGTCATTCATAAAAGTTGAATTAGAAAATGTGACTTTCCTCTTGAATTTGTTATGGGCCTATGTAGAGCTTAAAATTATGAATCTTGAGACATATTTTGCCAATTGTTCCATCTATTAGTGAGAAATACTAATTCTTGTTAATGTATATGATATGGCAGGATCCCTTCTGGAACAAGCTTTTGTGGTATTGTGCAGACAATGACTCCTACAAGGGCTGCTTCTTACCTGAAAAACTGGAGATCCCTCAAGAGGATTTCGGACAAGCAAATAATTGGTTTCAAGAGTATTCCGGACAAGCAAATAATTGGGATGATGTTGGGGCACAAGTAAATAACTGGGACTGTGAAGGAGCAGAAGCTAATGATTGGGACCAAGACCAGGTGGGAAAAGTTAACAATTGGGACCAAGACCAAGGCGGACAAGTCAACAATTGGGACCAAGATGAAGGGGAACTAGCTAAGAATTGGAATGAGGAAGGCACTTGCGTCAATGAAGAGAAACAGAGTTTTCAGCCATCTCCTGATGTTGAGGGTACAACGCACCAAACAGACTACATCCCGGACCCTGTTATGGATGAAGCTGAATGGTCTGATGGTTGGAAATAACTACTCAGTTTATTATGCTAGTGGGTGAATCTTTTGGATGTTACATTGAACCTCAAAACTCAAAGAACCTTTTCAGATTCTGCACTAGAATGTGTGGTTATTGCATTTTGAAAAAATTCAAGCGCAGGAATGCCTGCACTTTAGCTACATGTATAGATGCTATCTATCTATCTATATATTTAAAATGGTTTGGGAAATTCAAGCTCAAA</genome_strand>
        <mrna_strand>GGACGATCAGATTGTTTGTGTAAAAGTGATTTGGTTTAAGTGTTAAGTAGGGTTACTTTGCTGTGGTAATTCATTCATGTTTACTTTCTCCATGAATCTTAATACTTGGCTATTGTATAATAACTTTGGTTGAAAGCTGCAGATTCTTCTTGAAATTCATCTTAATTACTCATGGGCACAATTTCTTATAAGTCGGATGATGAATACTCAACTATTACTGACAAAGGAGACATCGGATTTGTCGACTTTGACAAATATAAATCAGCCGGTAGCTACAATCCAAATGAAGAGAGTGATATAGTTGTTATATCTGTTCCATTTCCGCTGGTAGCAGGAAAACCTAAATCAGGATTTGTTGGGGAAACTGTTGTTGATTCAGTCACAATAGAGAATACCACCAATGAAACCCAGGAGCTGTGGTCAATTAAGATCTATAACTCAAAACCTGAGGATTCATTCACTCTTTCTCTGATGAAACCTCCAACTGATAGTTCTGATTTGCAATATGTTGAAGAATTCATGGAATCCTTTAGCTTAGAGGATAGAATGTTACGGCCAGGTCAAACACTTACAGTATGGCTGACTTGTAAACCCAAAGAAATTGGATTGCACACATCAGCTGTGCATTTCAATGTGGGTGATGACACCATAGAAAGATTAGTTTTTGTCTTGGCTGAGGATAAGGTTTCCCAGTCTCTGGCTTCAAGGAGGCCGTTCCACAGAGACAGAAAGAAGAAAGTACCAGCAGTAGATGTTTTTGCTGCAAATGCATTTGTTGTGGGTTCCCGTCCTACAAGGGCTCCAAATCGAGGTTTCAGATACAGACTTCCTTCATATCCAATTCCAGGTGATATTCGGGAAATGATAGAGAACAAACAATTTCCTGATGTTATTGGGGAAGGTTTAAGAAGAGACAATTATATTGCTTATTTTAGAACTTTACTAGCAATTGAAGAAATCAAGATGGAG...........................................................................GAAGACATGAGGGACTATGATATGTTGTCGGTCACCATGAAGCGCAAAGGACTACAGTTCTTGTCCCTTGATGTCCCAGGGCTAGCCGAGAGGAGGCCATCACTTGTTTATGGAGATTTTATCTTTGCAAGGCTAGCTTCTGGAGATGCTAGTGAGATCACCCCTTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATATCCACCGAGTTGAGGCGGAAGAAGTATATTTGAAGTTTGATGAAGAATTCCACATCAACCATGTTCCTGGAAATCTGTACAATGTGCAATTTTCATTCAATCGTACGGGTGTGCGGAGGTTACATCAAGCCATTGAAGCTACAGAAAGCTTAAATGGAGAAATTCTCTTTCCATCAGGCATATCCAGAACGAGAAATATACAAGCTGCTAGACTGGCACCTAATTCATGTATGCTTAACAAGGAACAGACAACTGCAGTTGAAAAGATTCTTGGGTGCAAAGGAGGGGCTCCATATGTTATCCATGGGCCTCCTGGTACAGGCAAAACAAGGACTCTTATAGAAGCTATCATCCAGGTACGTATTATGAGGAAAGATGCTCGAGTTCTTGTCTGTGCACCTTCAAATAGTGCTGCAGACCATATACTTGAGAAACTTGTCAGTCAGCAGAATGTTGAAGTGCAGGACAATGAGATTCTTAGGTTGAATGCACTCACACGTCCTTTAGATGATGTGAATCCTAGTTACCTTCGTTTTTGCAATGCTGAAGATAATTCTTTTAAGTGCCCCCTTCTCAGGGACCTTAAAAGATATACGGTTATTATATCTACATATGCTAGTGCATGTCTTCTTTATTCAGAGGGCATCAAACGGGGACACTTCTCCCATATTTTCTTGGATGAGGCAGGACAGGCATCAGAGCCTGATACCATGGTTCCTCTATCACATCTTTTAAAGAAAGAGACAGTCGTTGTACTTGCTGGTGACCCACAGCAACTTGGTCCCATTGTTTTCTCAAAAGATGCTGAAAATTATGGATTGGCAACTTCATATATGGAGAGGTTATTTGAATGCCAGTTATATGGTGATCTCAACGAAAATTATGCTACCAGACTAGTAAGGAATTATCGGTGTCATCCGGTAATTCTGCAGCTTCCCTCAGAAATGTTTTATGAAGGAGAGTTGATCCCATGTAAAGAAGATAAAACTTTTACCCAGACTTGGGTGGACCTGCTTCCAAACAAGGAATTTCCGTTGGTTTTCATTGGCATACAGGGTTGTGATGAAAGAGAAGGAAGCAACCCATCATGGTTCAACAGGATCGAAGCAAGCAAGGTGGTAGAGATCATCAGAGATCTGATAGGGAACAAAGGTCTGAAAGAGGAAGATATTGGGGTGATAACACCTTATAGGCAGCAAGTACTGAAAATAAGAACAGCCCTTGAGAGCTTTGAGTGGGCTAATATAAAGGTTGGCAGCGTAGAGCAATTCCAAGGTCAGGAGAGAGAAGTTATTATCATATCGACCGTCCGGTCGACGATTCAGCATAATGACTTCGACAGAATCCATTACTTAGGATTCTTAAGCAATCCGAGAAGGTTCAATGTTGCTGCTACAAGAGCCAGATCATTGCTTGTAGTTGTCGGGAATCCACACATCATCTGCAAG......................................................................................................................................................................................................................................................................................................................................................GATCCCTTCTGGAACAAGC-TTTGTGGTATTGTGCAGACAATGACTCCTACAAGGGCTGCTTCTTACCTGAAAAACTGGAGATCCCTCAAGAGGATTTCGGACAAGCAAATAATTGGTTTCAAGAGTATTCCGGACAAGCAAATAATTGGGATGATGTTGGGGCACAAGTAAATAACTGGGACTGTGAAGGAGCAGAAGCTAATGATTGGGACCAAGACCAGGTGGGAAAAGTTAACAATTGGGACCAAGACCAAGACGGACAAGTCAACAATTGGGACCAAGATGAAGGGGAACTAGCTAAGAATTGGAATGAGGAAGGCACTTGCGTCAATGAAGAGAAACAGAGTTTTCAGCCATCTCCTGATGTTGAGGGTACAACGCACCAAACAGACTACATCCCGGACCCTGTTATGGATGAAGCTGAATGGTCTGATGGTTGGAAATAACTACTCAGTTTATTATGCTAGTGGGTGAATCTTTTGGATGTTACATTGAACCTCAAAACTCAAAGAACCTTTTCAGATTCTGCACTAGAATGTGTGGTTATTGCATTTTGAAAAAATTCAAGCGCAGGAATGCCTGCACTTTAGCTACATGTATAGATGCTATCTATCTATCTATATATTTAAAATGGTTTGGGAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452005" ref_strand="+" ref_description="SGN-E452005 [cSTS-15-G14]">
      <seq>ggcaggacaggcatcagagcctgataccatggttcctctgtcacatcttttaaagaaagagacagtagttgtacttgctggtgacccacagcaacttggtcccatagttttctcaaaagatgctgaaaattatggattggcaacttcatttatggaaaggttatttgaatgccagttatatggtgcgctcaacgaaaattatgctaccagactagtaaggaactatcggtgtcatccagtaattctgcagcttccctcagaaatgttttatgaaggagagttgatcccatgtaaagaagataaaacttttacccagacttgggtggacatgcttccaaacaaggaatttccgttgcttttcattggcatacaaggttgtgatgaaagggaaggaaacaacccatcatggttcaacaggatcgaagcaagcaaggtagtagagatcatcagagatctgatagggaacaaaggtctgaaagaggaagacattggggtgataacaccttataggcagcaagtactgaaaataagaacagcccttgagagctttgattgggctaatataaaggttggcagcgtagagcaatttcaaggtcaggagagagaagttattatcatatcgaccgtccggtcaacgatacagcataatgactttgacagagtccattatttangattcttaagcaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5890" stop="4601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5590" g_stop="4901" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E452005" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5590" e_stop="4901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGGACAGGCATCAGAGCCTGATACCATGGTTCCTCTATCACATCTTTTAAAGAAAGAGACAGTCGTTGTACTTGCTGGTGACCCACAGCAACTTGGTCCCATTGTTTTCTCAAAAGATGCTGAAAATTATGGATTGGCAACTTCATATATGGAGAGGTTATTTGAATGCCAGTTATATGGTGATCTCAACGAAAATTATGCTACCAGACTAGTAAGGAATTATCGGTGTCATCCGGTAATTCTGCAGCTTCCCTCAGAAATGTTTTATGAAGGAGAGTTGATCCCATGTAAAGAAGATAAAACTTTTACCCAGACTTGGGTGGACCTGCTTCCAAACAAGGAATTTCCGTTGGTTTTCATTGGCATACAGGGTTGTGATGAAAGAGAAGGAAGCAACCCATCATGGTTCAACAGGATCGAAGCAAGCAAGGTGGTAGAGATCATCAGAGATCTGATAGGGAACAAAGGTCTGAAAGAGGAAGATATTGGGGTGATAACACCTTATAGGCAGCAAGTACTGAAAATAAGAACAGCCCTTGAGAGCTTTGAGTGGGCTAATATAAAGGTTGGCAGCGTAGAGCAATTCCAAGGTCAGGAGAGAGAAGTTATTATCATATCGACCGTCCGGTCGACGATTCAGCATAATGACTTCGACAGAATCCATTACTTAGGATTCTTAAGCAATCC</genome_strand>
        <mrna_strand>GGCAGGACAGGCATCAGAGCCTGATACCATGGTTCCTCTGTCACATCTTTTAAAGAAAGAGACAGTAGTTGTACTTGCTGGTGACCCACAGCAACTTGGTCCCATAGTTTTCTCAAAAGATGCTGAAAATTATGGATTGGCAACTTCATTTATGGAAAGGTTATTTGAATGCCAGTTATATGGTGCGCTCAACGAAAATTATGCTACCAGACTAGTAAGGAACTATCGGTGTCATCCAGTAATTCTGCAGCTTCCCTCAGAAATGTTTTATGAAGGAGAGTTGATCCCATGTAAAGAAGATAAAACTTTTACCCAGACTTGGGTGGACATGCTTCCAAACAAGGAATTTCCGTTGCTTTTCATTGGCATACAAGGTTGTGATGAAAGGGAAGGAAACAACCCATCATGGTTCAACAGGATCGAAGCAAGCAAGGTAGTAGAGATCATCAGAGATCTGATAGGGAACAAAGGTCTGAAAGAGGAAGACATTGGGGTGATAACACCTTATAGGCAGCAAGTACTGAAAATAAGAACAGCCCTTGAGAGCTTTGATTGGGCTAATATAAAGGTTGGCAGCGTAGAGCAATTTCAAGGTCAGGAGAGAGAAGTTATTATCATATCGACCGTCCGGTCAACGATACAGCATAATGACTTTGACAGAGTCCATTATTTANGATTCTTAAGCAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476057" ref_strand="+" ref_description="SGN-E476057 [cSTB-43-M21]">
      <seq>gaaaaacttgtcagtcagcagaatgctgaagtgcaggagcatgagatttttaggttgaatgcactcacacgtcctttagatgatgtgaatcctagttaccttcgtttttgcaatgctgaagataattcttttaagtgccctcttctcagggaccttagaagatatagggttatcatatctacatatgctagtgcatgtcttctttattcagaaggcatcaaacggggacacttctctcatattttcttggatgaggcaggacaggcatcagagcctgataccatggttcctctgtcacatcttttaaagaaagagacagtagttgtacttgctggtgacccacagcaacttggtcccatagttttctcaaaagatgctgaaaattatggattagcaacttcatttatggaaaggttatttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6144" stop="5121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5844" g_stop="5421" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E476057" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5844" e_stop="5421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAACTTGTCAGTCAGCAGAATGTTGAAGTGCAGGACAATGAGATTCTTAGGTTGAATGCACTCACACGTCCTTTAGATGATGTGAATCCTAGTTACCTTCGTTTTTGCAATGCTGAAGATAATTCTTTTAAGTGCCCCCTTCTCAGGGACCTTAAAAGATATACGGTTATTATATCTACATATGCTAGTGCATGTCTTCTTTATTCAGAGGGCATCAAACGGGGACACTTCTCTCATATTTTCTTGGATGAGGCAGGACAGGCATCAGAGCCTGATACCATGGTTCCTCTATCACATCTTTTAAAGAAAGAGACAGTCGTTGTACTTGCTGGTGACCCACAGCAACTTGGTCCCATTGTTTTCTCAAAAGATGCTGAAAATTATGGATTGGCAACTTCATATATGGAGAGGTTATTTGAAT</genome_strand>
        <mrna_strand>GAAAAACTTGTCAGTCAGCAGAATGCTGAAGTGCAGGAGCATGAGATTTTTAGGTTGAATGCACTCACACGTCCTTTAGATGATGTGAATCCTAGTTACCTTCGTTTTTGCAATGCTGAAGATAATTCTTTTAAGTGCCCTCTTCTCAGGGACCTTAGAAGATATAGGGTTATCATATCTACATATGCTAGTGCATGTCTTCTTTATTCAGAAGGCATCAAACGGGGACACTTCTCTCATATTTTCTTGGATGAGGCAGGACAGGCATCAGAGCCTGATACCATGGTTCCTCTGTCACATCTTTTAAAGAAAGAGACAGTAGTTGTACTTGCTGGTGACCCACAGCAACTTGGTCCCATAGTTTTCTCAAAAGATGCTGAAAATTATGGATTAGCAACTTCATTTATGGAAAGGTTATTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739258" ref_strand="+" ref_description="SGN-E739258 [LC16CH02]">
      <seq>cttatcttaaaacccttctctattctctcttttaaagaccaaaatcgagattcttcttgaaattcatcttaattactcatgggcacaatttcttataagtcggatgatgaatactcaactattactgacaaaggagacatcggatttgtcgactttgacaaatataaatcagctggtagctacaatccaaatgaagagagtgatatagttgttatatctgttccatttccgctggtagcaggaaaacctaaatcaggatttgttggggaaactgttgttgattcagtcacaatagagaataccaccaatgaaacccaggagctgtggtcaattaagatctataactcaaaacctgaggattcattcactctttctctgatgaaacctccaactgatagttctgatttgcaatatgttgaagaattcatggaatcctttagcttagaggatagaatgttacggccaggtcaaacacttacagtatggctgacttgtaaacccaaagaaattggattgcacacatcagctgtgcatttcaatgtgggtgatgacaccatagaaagattagtttttgtcttggctgaggataaggtttcccagtctctggcttcaaggaggccgttccacagagacagaaagaagaaagtaccagcagtagatgtttttgctgcaaatgcatttgttgtgggttcccgtcctacaagggctccaaatcgaggtttcagatacagacttccttcatatccaattccaggtgatatacgggaaatgatagagaacaaacaatttcctgatgttattggggaaggtttaaaaagagacaattatattgcttattttagaactttactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10764" stop="8116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10464" g_stop="10416" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10415" i_stop="9220" i_length="1196">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9219" g_stop="8416" g_length="804"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="853" r_length="804" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E739258" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10464" e_stop="10416"/>
          <exon e_start="9219" e_stop="8416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGCTTAAAACCCTTCTCTATTCTCTCTTTTAAAGACCAAAATCGAGGTGGGTTTTCTTTTTATCTGTTCTATTTGATCTGCATTTTCAGTTTTCTGAACCAATTAACTGATTTGTGATTGTGGGGTTTTCGTTTTTTTATGTGTATGGATATCCGGGTTTGATTTTAATAGCAACTTTCCCTTTTCTACTTTTGAAATTTGTGATTTTTTTTAAACTCATGCATTGTTCATGTCGATTTTCACGCATTGTTCATGTCTGACTCAGTTTGTTGTCTTTGTAAAAGTTTTTGTAAAATTTTGCCTAATTTTGATGTAATTTTCGTCCCCTTTGAGTGAAGTATCCAGAAACCTTGATGTAGACTTGATTTTACTATTTTTATTGTGATTTTTTGAGAGCATCAGTTTCTCTTCACCTAAAGTAGTTGCCTTTTGTCAATGTGGAGTTGAGTAAATAAGTAAATGAAGGAAGAACAATTAGCCCCTTTGTTACTATAACGTGTTTATTTTTGGGATCATTAACTTGGAAGTGATTTGTTCAGAAAAGTTGATTAGGCTCATTTATCTGTACTTTCAGCGTATCGGAAAAACTGGCTGTGTAGGTAATTGTTCACCTAAAGTATCAAAAAGGAGAACTTTCATTGAAAACTCATGTATAATTATAATGCACCCCATAGTCATTTGTGTGCTATGTCATTATGCTAACTCATGATTCTTTCATAACAATGTCACATACATGAACTAGTTTCGAAAAATGTTGCATACGTGAATAATCTACAAATACAAAATTGGCATGCTTACTTTAAGATTATTTTACTTAAAAAGTAAGGTTATGTGTACCTATTTATGGATCGACTGACCTGGATATTAATGTGTAAAAGTTGGATACAAATACTGGTTGTCTATCAATATAATGCCTTGTACGGTGCGTTAGCATTTCCGAATGAAAATGGCATTTCATTTAAGCACTTTTTTTTTCAGGAGAGATTTTGAATTGAGTCCTGAATTTTCATCTGGTATCCAATCTAAAGTGCTTGTTAATTTGGTGATTGTTAGTCTAGTTCTCATCATTATCATTTTACTCTTTCTTTTTAGATTTATTTGGACGATCAGATTGTTTGTGTAAAAGTGATTTGGTTTAAGTGTTAAGTAGGGTTACTTTGCTGTGGTAATTCATTCATGTTTACTTTCTCCATGAATCTTAATACTTGGCTATTGTATAATAACTTTGGTTGAAAGCTGCAGATTCTTCTTGAAATTCATCTTAATTACTCATGGGCACAATTTCTTATAAGTCGGATGATGAATACTCAACTATTACTGACAAAGGAGACATCGGATTTGTCGACTTTGACAAATATAAATCAGCTGGTAGCTACAATCCAAATGAAGAGAGTGATATAGTTGTTATATCTGTTCCATTTCCGCTGGTAGCAGGAAAACCTAAATCAGGATTTGTTGGGGAAACTGTTGTTGATTCAGTCACAATAGAGAATACCACCAATGAAACCCAGGAGCTGTGGTCAATTAAGATCTATAACTCAAAACCTGAGGATTCATTCACTCTTTCTCTGATGAAACCTCCAACTGATAGTTCTGATTTGCAATATGTTGAAGAATTCATGGAATCCTTTAGCTTAGAGGATAGAATGTTACGGCCAGGTCAAACACTTACAGTATGGCTGACTTGTAAACCCAAAGAAATTGGATTGCACACATCAGCTGTGCATTTCAATGTGGGTGATGACACCATAGAAAGATTAGTTTTTGTCTTGGCTGAGGATAAGGTTTCCCAGTCTCTGGCTTCAAGGAGGCCGTTCCACAGAGACAGAAAGAAGAAAGTACCAGCAGTAGATGTTTTTGCTGCAAATGCATTTGTTGTGGGTTCCCGTCCTACAAGGGCTCCAAATCGAGGTTTCAGATACAGACTTCCTTCATATCCAATTCCAGGTGATATACGGGAAATGATAGAGAACAAACAATTTCCTGATGTTATTGGGGAAGGTTTAAGAAGAGACAATTATATTGCTTATTTTAGAACTTTACTAG</genome_strand>
        <mrna_strand>CTTATCTTAAAACCCTTCTCTATTCTCTCTTTTAAAGACCAAAATCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTCTTGAAATTCATCTTAATTACTCATGGGCACAATTTCTTATAAGTCGGATGATGAATACTCAACTATTACTGACAAAGGAGACATCGGATTTGTCGACTTTGACAAATATAAATCAGCTGGTAGCTACAATCCAAATGAAGAGAGTGATATAGTTGTTATATCTGTTCCATTTCCGCTGGTAGCAGGAAAACCTAAATCAGGATTTGTTGGGGAAACTGTTGTTGATTCAGTCACAATAGAGAATACCACCAATGAAACCCAGGAGCTGTGGTCAATTAAGATCTATAACTCAAAACCTGAGGATTCATTCACTCTTTCTCTGATGAAACCTCCAACTGATAGTTCTGATTTGCAATATGTTGAAGAATTCATGGAATCCTTTAGCTTAGAGGATAGAATGTTACGGCCAGGTCAAACACTTACAGTATGGCTGACTTGTAAACCCAAAGAAATTGGATTGCACACATCAGCTGTGCATTTCAATGTGGGTGATGACACCATAGAAAGATTAGTTTTTGTCTTGGCTGAGGATAAGGTTTCCCAGTCTCTGGCTTCAAGGAGGCCGTTCCACAGAGACAGAAAGAAGAAAGTACCAGCAGTAGATGTTTTTGCTGCAAATGCATTTGTTGTGGGTTCCCGTCCTACAAGGGCTCCAAATCGAGGTTTCAGATACAGACTTCCTTCATATCCAATTCCAGGTGATATACGGGAAATGATAGAGAACAAACAATTTCCTGATGTTATTGGGGAAGGTTTAAAAAGAGACAATTATATTGCTTATTTTAGAACTTTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241768" ref_strand="+" ref_description="SGN-E241768 [cLEE-10-E7]">
      <seq>cacccgaaagttttttctaaaaacaaattctgaggacctccataggttggggaaccaccacttacacttacatcatttttttttaacttctatttctgcatttacaagctctttttaaggaataacccaatttcctcaattttttgtgtgctatataacccatgaatttggcaccctgaagcactcgaaatctcttctaaaaaaatttatgaggaactccataatgagttggaaaccaccatatatacttagaccattttaacgtttattttcgcatttacattcaccttttagaaattatctaaaattctcaattttttgtatgcatagcccatgatctgccggtccaccccacccccaccctcctcccgaagcaccatagaagtttttttctcaaaattaaccagattcctccatttttcgtgtgctaataccatagtggagcacccaaatttttattttcacaaaaactttgtaaggatctacatagtgagttgggaaattactacgtatactcacatcattttttatgcttatttctgcatttacaaattctttttaggaattattcaaatttcttgatttgtcatgtgctaccccatggatctggcgccccagagcacccaaaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="+" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18688" stop="19920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18988" g_stop="19620" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="+" ref_id="SGN-E241768" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18988" e_stop="19620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCGAAAGTTTTTTCTAAAAACAAATTCTGAGGACCTCCATAGGTTGGGGAACCACCACTTACACTTACATCATTTTTTTTTAACTTCTATTTCTGCATTTACAAGCTCTTTTTAAGGAATAACCCAATTTCCTCAATTTTTTGTGTGCTATATAACCCATGAATTTGGCACCCTGAAGCACTCGAAATCTCTTCTAAAAAAATTTATGAGGAACTCCATAATGAGTTGGAAACCACCATATATACTTAGACCATTTTAACGTTTATTTTCGCATTTACATTCACCTTTTAGAAATTATCTAAAATTCTCAATTTTTTGTATGCATAGCCCATGATCTGCCGCTCCACCCCACCCCCACCCCCCTCCCGAAGCACCATAGAAGTTTTTTTCTCAAAATTAACCAGATTCCTCCATTTTTCGTGTGCTAATACCATAGTGGAGCACCCAAATTTTTATTTTCAAAAAAACTTTGTAAGGATCTACATAGTGAGTTGGGAAATTACTACGTATACTCACATCATTTTTTATGCTTATTTCTGCATTTACAAATTCTTTTTAGGAATTATTCAAATTTCTTGATTTGTCATGTGCTACCCCATGGATCTGGCGCCCCAGAGCACCCAAAAATTT</genome_strand>
        <mrna_strand>CACCCGAAAGTTTTTTCTAAAAACAAATTCTGAGGACCTCCATAGGTTGGGGAACCACCACTTACACTTACATCATTTTTTTTTAACTTCTATTTCTGCATTTACAAGCTCTTTTTAAGGAATAACCCAATTTCCTCAATTTTTTGTGTGCTATATAACCCATGAATTTGGCACCCTGAAGCACTCGAAATCTCTTCTAAAAAAATTTATGAGGAACTCCATAATGAGTTGGAAACCACCATATATACTTAGACCATTTTAACGTTTATTTTCGCATTTACATTCACCTTTTAGAAATTATCTAAAATTCTCAATTTTTTGTATGCATAGCCCATGATCTGCCGGTCCACCCCACCCCCACCCTCCTCCCGAAGCACCATAGAAGTTTTTTTCTCAAAATTAACCAGATTCCTCCATTTTTCGTGTGCTAATACCATAGTGGAGCACCCAAATTTTTATTTTCACAAAAACTTTGTAAGGATCTACATAGTGAGTTGGGAAATTACTACGTATACTCACATCATTTTTTATGCTTATTTCTGCATTTACAAATTCTTTTTAGGAATTATTCAAATTTCTTGATTTGTCATGTGCTACCCCATGGATCTGGCGCCCCAGAGCACCCAAAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241769" ref_strand="+" ref_description="SGN-E241769 [cLEE-10-E7](-)">
      <seq>ttaaaagatgtcttataccttcccttcaaaataaattagaacccttacgtagaatcatataaagttagtaatttagtaaaatagatgtcctaattcaccttttaacataattaggtggcgattctttaaaatagaatcaagattcaccaatatgttgtacacagtacgaacctcaagttaaaatgaggtataacaatctgttctttgttttcttagtatgtgtttttgtgttcctctgaagtttgtaatagagtacacaccagataatcaaacatgataactttccaccatgtctggttctctttatgccgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="+" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21742" stop="22656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22042" g_stop="22356" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="+" ref_id="SGN-E241769" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22042" e_stop="22356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAGATGTCTTATACCTTCCCTTCAAAATAAATTAGAACCCTTACGTAGAATCATATAAAGTTAGTAATTTAGTAAAATAGATGTCCTAATTCACCTTTTAACATAATTAGGTGGCGATTCTTTAAAATAGAATCAAGATTCACCAATATGTTGTACACAGTACGAACCTCAAGTTAAAATGAGGTATAACAATCTGTTCTTTGTTTTCTTAGTTTGTGTTTTTGTGTTCCTCTGAAGTTTGTAATAGAGTACACACCAGATAATCAAACATGATAACTTTCCACCATGTCTGGTTCTCTTTATGCCGTTGA</genome_strand>
        <mrna_strand>TTAAAAGATGTCTTATACCTTCCCTTCAAAATAAATTAGAACCCTTACGTAGAATCATATAAAGTTAGTAATTTAGTAAAATAGATGTCCTAATTCACCTTTTAACATAATTAGGTGGCGATTCTTTAAAATAGAATCAAGATTCACCAATATGTTGTACACAGTACGAACCTCAAGTTAAAATGAGGTATAACAATCTGTTCTTTGTTTTCTTAGTATGTGTTTTTGTGTTCCTCTGAAGTTTGTAATAGAGTACACACCAGATAATCAAACATGATAACTTTCCACCATGTCTGGTTCTCTTTATGCCGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345694" ref_strand="+" ref_description="SGN-E345694 [cTOF-18-J21]">
      <seq>aatcttcgagcttggtggctttggtgagattatggccagccatgcaagagagcacggtgtgtcaacacagttgatgtctgagctgttgctacgagtctgcttttggtatctcagttatggaagatcaagttgttgtaggtccttgagaaggtgaagttaactacagtcaacagaacaaactgtctttgggactcttttccccttgagcattggaagctgaagctaatgcctcgccacgatactaattagcttcttcttgtttggtcaatttttaacaagatgagctcgagctacggttaaataggactaccaagagagaaaatgacagttcaatttgttttagaccaaagattcaacggcataaagagaaccagacatggtggaaagttatcatgtttgattatctggtgtgtactctattacaaacttcagaggaacacaaaaacacaaactaagaaaacaaagaacagattgttatacctcattttaacttgaggttcgtactgtgtacaacatattggtgaatcttgattctattttaaagaatcgccacctaattatgttaaaaggtgaattaggacatctattttactaaattactaactntatatgattctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23008" stop="21791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22708" g_stop="22082" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E345694" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22708" e_stop="22082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCGAGCTTGGTGGCTTTGGTGAGATTATGGCCAGCCATGCAAGAGAGCACGGTGTGTCAACACAGTTGATGTCTGAGCTGTGGCTACGAGTCTGCTTTTGGTATCTCAGTTATGGAAGATCAAGTTGTTGTAGGTCCTTGAGAAGGTGAAGTTAACTACAGTCAACAGAACAAACTGTCTTTGGGACTCTTTTCCCCTTGAGCATTGGAAGCTGAAGCTAATGCCTCGCCACGATACTAATTAGCTTCTTCTTGTTTGGTCAATTTTTAACAAGATGAGCTCGAGCTACGGTTAAATAGGACTACCAAGAGAGAAAATGACAGTTCAATTTGTTTTAGACCAAAGATTCAACGGCATAAAGAGAACCAGACATGGTGGAAAGTTATCATGTTTGATTATCTGGTGTGTACTCTATTACAAACTTCAGAGGAACACAAAAACACAAACTAAGAAAACAAAGAACAGATTGTTATACCTCATTTTAACTTGAGGTTCGTACTGTGTACAACATATTGGTGAATCTTGATTCTATTTTAAAGAATCGCCACCTAATTATGTTAAAAGGTGAATTAGGACATCTATTTTACTAAATTACTAACTTTATATGATTCTACGTAAGGGT</genome_strand>
        <mrna_strand>AATCTTCGAGCTTGGTGGCTTTGGTGAGATTATGGCCAGCCATGCAAGAGAGCACGGTGTGTCAACACAGTTGATGTCTGAGCTGTTGCTACGAGTCTGCTTTTGGTATCTCAGTTATGGAAGATCAAGTTGTTGTAGGTCCTTGAGAAGGTGAAGTTAACTACAGTCAACAGAACAAACTGTCTTTGGGACTCTTTTCCCCTTGAGCATTGGAAGCTGAAGCTAATGCCTCGCCACGATACTAATTAGCTTCTTCTTGTTTGGTCAATTTTTAACAAGATGAGCTCGAGCTACGGTTAAATAGGACTACCAAGAGAGAAAATGACAGTTCAATTTGTTTTAGACCAAAGATTCAACGGCATAAAGAGAACCAGACATGGTGGAAAGTTATCATGTTTGATTATCTGGTGTGTACTCTATTACAAACTTCAGAGGAACACAAAAACACAAACTAAGAAAACAAAGAACAGATTGTTATACCTCATTTTAACTTGAGGTTCGTACTGTGTACAACATATTGGTGAATCTTGATTCTATTTTAAAGAATCGCCACCTAATTATGTTAAAAGGTGAATTAGGACATCTATTTTACTAAATTACTAACTNTATATGATTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544309" ref_strand="+" ref_description="SGN-E544309 [TUS-66-J6](-)">
      <seq>agatcaagttgttgtaggtccttgagaaggtgaagttaactacagtcaacagaacaaactgtctttgggactcttttccccttgagcattggaagctgaagctaatgcctcgccacgatactaattagcttcttcttgtttggtcaatttttaacaagatgagctcgagctacggttaaataggactaccaagagagaaaatgacagttcaatttgttttagaccaaagattcaacggcataaagagaaccagacatggtggaaagttatcatgtttgattatctggtgtgtactctattacaaacttcagaggaacacaaaaacacaaactaagaaaacaaagaacagattgttatacctcattttaacttgaggttcgtactgtgtacaacatattggtgaatcttgattctattttaaagaatcgccacctaattatgttaaaaggtgaattaggacatctattttactaaaaaaaaaaaaaaaaaactcgaggggggcccgtaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22887" stop="21806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22587" g_stop="22114" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="475" polyA_stop="491"/>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E544309" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22587" e_stop="22114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCAAGTTGTTGTAGGTCCTTGAGAAGGTGAAGTTAACTACAGTCAACAGAACAAACTGTCTTTGGGACTCTTTTCCCCTTGAGCATTGGAAGCTGAAGCTAATGCCTCGCCACGATACTAATTAGCTTCTTCTTGTTTGGTCAATTTTTAACAAGATGAGCTCGAGCTACGGTTAAATAGGACTACCAAGAGAGAAAATGACAGTTCAATTTGTTTTAGACCAAAGATTCAACGGCATAAAGAGAACCAGACATGGTGGAAAGTTATCATGTTTGATTATCTGGTGTGTACTCTATTACAAACTTCAGAGGAACACAAAAACACAAACTAAGAAAACAAAGAACAGATTGTTATACCTCATTTTAACTTGAGGTTCGTACTGTGTACAACATATTGGTGAATCTTGATTCTATTTTAAAGAATCGCCACCTAATTATGTTAAAAGGTGAATTAGGACATCTATTTTACTAA</genome_strand>
        <mrna_strand>AGATCAAGTTGTTGTAGGTCCTTGAGAAGGTGAAGTTAACTACAGTCAACAGAACAAACTGTCTTTGGGACTCTTTTCCCCTTGAGCATTGGAAGCTGAAGCTAATGCCTCGCCACGATACTAATTAGCTTCTTCTTGTTTGGTCAATTTTTAACAAGATGAGCTCGAGCTACGGTTAAATAGGACTACCAAGAGAGAAAATGACAGTTCAATTTGTTTTAGACCAAAGATTCAACGGCATAAAGAGAACCAGACATGGTGGAAAGTTATCATGTTTGATTATCTGGTGTGTACTCTATTACAAACTTCAGAGGAACACAAAAACACAAACTAAGAAAACAAAGAACAGATTGTTATACCTCATTTTAACTTGAGGTTCGTACTGTGTACAACATATTGGTGAATCTTGATTCTATTTTAAAGAATCGCCACCTAATTATGTTAAAAGGTGAATTAGGACATCTATTTTACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320670" ref_strand="-" ref_description="SGN-E320670 [cTOB-27-A14]">
      <seq>aagtagaagtgaggacataaatcctcagtgtctggtgtactccccttttttgtctagattcgggcaggcgttgctttggaaaactcaacccacaaagggatactggggaccatccatatcccacaaatgaaaaaagaatcttcgagcttggtggctttggtgagattatggccagccatgcaagagagcacggtgtgtcaacacagttgatgtctgagctgtggctacgagtctgcttttggtatctcagttatggaagatcaagttgttgtaggtccttgagaaggtgaagttaactacagtcaacagaacaanctgtctttgggactcttttccccttgagcattggaagctgaagctaatgcctcgccacgatactaattagcttcttcttgtttggtcaatttttaacaagatgagctcgagctacggttaaataggactaccaagagagaaaatgacagttcaatttgtttagaccaaagattcaacggcataaagagaaccagacatggtggaaagttatcatgtttgattatctggtgtgtactctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24011" stop="21989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23711" g_stop="23655" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23654" i_stop="23246" i_length="409">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23245" g_stop="23168" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="136" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23167" i_stop="22709" i_length="459">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.515" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22708" g_stop="22289" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="555" r_length="419" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E320670" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320670" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23711" e_stop="23655"/>
          <exon e_start="23245" e_stop="23168"/>
          <exon e_start="22708" e_stop="22289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAGAAGTGAGGACATAAATCCTCAGTGTCTGGTGTACTCCCCTTTTTTGTCTAGGTACACTTTATCTTTTGACTTCTTTATTTATGTGAATCTTATTTTTGTATATGATCTCTATGGGGTGCAAACTAGGACATGAAGTGCCCAATGAGGAAAGAAAGCTCTGTACTTTTCTCTTTTCTTTCTCCCAAGATTTCTTAATTGGTCTTGCTCAAATTCTGGATAAAGTAGATATCGACATGTACCATTTCCAGGCATGATGTTGTGGTTTGGTCTCTGAGATTCTCAGTAAGATTGCTCTTCAATAGAATATTCTGGCATATGTTTGAACCTGCTCGTGATACTACTATTTCTCAAGTCTCCTAATTAGCCTTGTGCCTCAAAACTCCAAAGTGCTTGTAACCTTTAAATGTTCGTCTAAGTATATTAGTGAGTGGTACTTATCTTATCTCTCTTCCCTCACCAGATTCGGGCAGGCGTTGCTTTGGAAAACTCAA-CCACAAAGGGATACTGGGGACCATCCATATCCCACAAATTGAAAAAGGTTATTCCTTCTCTGTCCTTAAGATAGACTTGAACTGTACATTCTTTTCCCTTGCAAGTTAACACTTCATTAGTAGCAAAATATTGATGTTCCATAGTGTTGTCATCTTTCCTTCATTTTGTTAGGTAATTATGATGTACTTCAGCATTATTTGTAAACATAGGTTATCTGCCTGTTAATATCATGGGCTGATCAAAGAGGATTTATCCAAACCCCCTTCAGAAAATAACTCTGTATATAGGAACAAAATTTTGTTTTGTGTATCTATATTAGATGTTGAATCCCCCCAACACAAACCAAAAGCTCAGTTCAGTGATAAAGGGGGTTCAAATTCTCTGACTTTCGTGCTAGCCATAGTTTCTAATGGCTTTTTAGCTCTTCGTGTGTTTTGTTTCTTTATTTTGTTTTGAATCCCTTTGGCAACTCACGCCACTGAAGTAACTGTCCGCTTTATTACAGAATCTTCGAGCTTGGTGGCTTTGGTGAGATTATGGCCAGCCATGCAAGAGAGCACGGTGTGTCAACACAGTTGATGTCTGAGCTGTGGCTACGAGTCTGCTTTTGGTATCTCAGTTATGGAAGATCAAGTTGTTGTAGGTCCTTGAGAAGGTGAAGTTAACTACAGTCAACAGAACAAACTGTCTTTGGGACTCTTTTCCCCTTGAGCATTGGAAGCTGAAGCTAATGCCTCGCCACGATACTAATTAGCTTCTTCTTGTTTGGTCAATTTTTAACAAGATGAGCTCGAGCTACGGTTAAATAGGACTACCAAGAGAGAAAATGACAGTTCAATTTGTTTTAGACCAAAGATTCAACGGCATAAAGAGAACCAGACATGGTGGAAAGTTATCATGTTTGATTATCTGGTGTGTACTCTAT</genome_strand>
        <mrna_strand>AAGTAGAAGTGAGGACATAAATCCTCAGTGTCTGGTGTACTCCCCTTTTTTGTCTAG.........................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGGGCAGGCGTTGCTTTGGAAAACTCAACCCACAAAGGGATACTGGGGACCATCCATATCCCACAAATGAAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTCGAGCTTGGTGGCTTTGGTGAGATTATGGCCAGCCATGCAAGAGAGCACGGTGTGTCAACACAGTTGATGTCTGAGCTGTGGCTACGAGTCTGCTTTTGGTATCTCAGTTATGGAAGATCAAGTTGTTGTAGGTCCTTGAGAAGGTGAAGTTAACTACAGTCAACAGAACAANCTGTCTTTGGGACTCTTTTCCCCTTGAGCATTGGAAGCTGAAGCTAATGCCTCGCCACGATACTAATTAGCTTCTTCTTGTTTGGTCAATTTTTAACAAGATGAGCTCGAGCTACGGTTAAATAGGACTACCAAGAGAGAAAATGACAGTTCAATTTG-TTTAGACCAAAGATTCAACGGCATAAAGAGAACCAGACATGGTGGAAAGTTATCATGTTTGATTATCTGGTGTGTACTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544310" ref_strand="+" ref_description="SGN-E544310 [TUS-66-J6]">
      <seq>cgagtggaatgctgactttgaggggtcaaatagatacaaaacatcatacttctctcatcgtcggtcagttcagacacctcagtatggaagcatggaaaatgatccatcaatctcgcaactttgtgtggatggacgatacagtgtttgtgatcgtgtaatttttggacataggtttagtgattttgatcctaatagggagcggaagccaagtgacttttcatcttctcgcagaccaagtgactatacctcttttcataggccaagtgattattcatctggtcataggcctagtgactattcctgcggacaaaggccaagtgatgtctccagatggggctcatcagatgatgagtatggacctggagattcacctaccgattcgttttcacctgtaacgaatagagggtatgctcctgcggaagatggttatagaatgccccgaaattcaacctactgtttagcagcaagtaaacaaatggttggtatttttctcaccgtatgggtgcggggtgatttgagggaacatgttcggaatctgaaagtatcatgtgttggcagagggttgatggggtaccttaggaataagggatctatttcaatgagtatgcagttgcatcaaacaagcttttgctttgtctgcactcacttaacctctggtcagaaagagggtgatgagttgcgcagaaattctgatgtcatggagatcctaaagaagaacagatttccgcaagttagtcgtgtggatgaagagaagtcaccagaaactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25802" stop="24340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25502" g_stop="24917" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24916" i_stop="24822" i_length="95">
            <donor d_prob="0.427" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24821" g_stop="24640" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="768" r_length="182" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E544310" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25502" e_stop="24917"/>
          <exon e_start="24821" e_stop="24640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTGGAATGCTGACTTTGAGGGGTCAAATAGATACAAAACATCATACTTCTCTCATCGTCGGTCAGTTCAGACACCTCAGTATGGAAGCATGGAAAATGATCCATCAATCTCGCAACTTTGTGTGGATGGACGATACAGTGTTTGTGATCGTGTAATTTTTGGACATAGGTTTAGTGATTTTGATCCTAATAGGGAGCGGAAGCCAAGTGACTTTTCATCTTCTCGCAGACCAAGTGACTATACCTCTTTTCATAGGCCAAGTGATTATTCATCTGGTCATAGGCCTAGTGACTATTCCTGCGGACAAAGGCCAAGTGATGTCTCCAGATGGGGCTCATCAGATGATGAGTATGGACCTGGAGATTCACCTACCGATTCGTTTTCACCTGTAACGAATAGAGGGTATGCTCCTGCGGAAGATGGTTATAGAATGCCCCGAAATTCAACCTACTGTTTAGCAGCAAGTAAACAAATGGTTGGTATTTTTCTCACCGTATGGGTGCGGGGTGATTTGAGGGAACATGTTCGGAATCTGAAAGTATCATGTGTTGGCAGAGGGTTGATGGGGTACCTTAGGAATAAGGTAATTCTAAGTGGAAAAGAGCTTGGTTATGTTTTGTCTAACTTGAGAGATTTCCACATATTGACTTAAATACCATCCCATATTTGGTTTTGCAGGGATCTATTTCAATGAGTATGCAGTTGCATCAAACAAGCTTTTGCTTTGTCTGCACTCACTTAACCTCTGGTCAGAAAGAGGGTGATGAGTTGCGCAGAAATTCTGATGTCATGGAGATCCTAAAGAAGACAAGATTTCCGCAAGTTAGTCGTGTGGATGAAGAGAAGTCACCAGAAACTAT</genome_strand>
        <mrna_strand>CGAGTGGAATGCTGACTTTGAGGGGTCAAATAGATACAAAACATCATACTTCTCTCATCGTCGGTCAGTTCAGACACCTCAGTATGGAAGCATGGAAAATGATCCATCAATCTCGCAACTTTGTGTGGATGGACGATACAGTGTTTGTGATCGTGTAATTTTTGGACATAGGTTTAGTGATTTTGATCCTAATAGGGAGCGGAAGCCAAGTGACTTTTCATCTTCTCGCAGACCAAGTGACTATACCTCTTTTCATAGGCCAAGTGATTATTCATCTGGTCATAGGCCTAGTGACTATTCCTGCGGACAAAGGCCAAGTGATGTCTCCAGATGGGGCTCATCAGATGATGAGTATGGACCTGGAGATTCACCTACCGATTCGTTTTCACCTGTAACGAATAGAGGGTATGCTCCTGCGGAAGATGGTTATAGAATGCCCCGAAATTCAACCTACTGTTTAGCAGCAAGTAAACAAATGGTTGGTATTTTTCTCACCGTATGGGTGCGGGGTGATTTGAGGGAACATGTTCGGAATCTGAAAGTATCATGTGTTGGCAGAGGGTTGATGGGGTACCTTAGGAATAAG...............................................................................................GGATCTATTTCAATGAGTATGCAGTTGCATCAAACAAGCTTTTGCTTTGTCTGCACTCACTTAACCTCTGGTCAGAAAGAGGGTGATGAGTTGCGCAGAAATTCTGATGTCATGGAGATCCTAAAGAAGAACAGATTTCCGCAAGTTAGTCGTGTGGATGAAGAGAAGTCACCAGAAACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306235" ref_strand="+" ref_description="SGN-E306235 [cLEY-13-B14]">
      <seq>gaagtggaatgctgactttgaggggtcaaatagatacaaaacatcatacttctctcattcgtcggtccagttcagacaccctcagtatggaagcatggaaaatgatccatcaatctcgcaactttgtgtggatggaccatacagtgtttgtgatcgtgtaatttttggacataggtttagtgattttgatcctaatagggagcggaagccaagtgacttttcatcttctcgcagaccaagtgactatacctcttttcataggccaagtgattattcatctggtcataggcctagtgactattcctgcggacaaaggccaagtgatgtctccagatggggctcatcagatgatgagtatggaccctggagattcaccctacccgaatcgttttcacctgtaacgaatagagggtatgctcctgcggaaaaatggttatagaatgccccgaaattcaaccctactgtttagcagcaagtaaacaaatggttggtatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25800" stop="24712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25502" g_stop="25012" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E306235" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25502" e_stop="25012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTGGAATGCTGACTTTGAGGGGTCAAATAGATACAAAACATCATACTTCTCTCA-TCGTCGGT-CAGTTCAGACA-CCTCAGTATGGAAGCATGGAAAATGATCCATCAATCTCGCAACTTTGTGTGGATGGACGATACAGTGTTTGTGATCGTGTAATTTTTGGACATAGGTTTAGTGATTTTGATCCTAATAGGGAGCGGAAGCCAAGTGACTTTTCATCTTCTCGCAGACCAAGTGACTATACCTCTTTTCATAGGCCAAGTGATTATTCATCTGGTCATAGGCCTAGTGACTATTCCTGCGGACAAAGGCCAAGTGATGTCTCCAGATGGGGCTCATCAGATGATGAGTATGGA-CCTGGAGATTCA-CCTA-CCGATTCGTTTTCACCTGTAACGAATAGAGGGTATGCTCCTGCGG-AAGATGGTTATAGAATGCCCCGAAATTCAA-CCTACTGTTTAGCAGCAAGTAAACAAATGGTTGGTATTTTTC</genome_strand>
        <mrna_strand>GAAGTGGAATGCTGACTTTGAGGGGTCAAATAGATACAAAACATCATACTTCTCTCATTCGTCGGTCCAGTTCAGACACCCTCAGTATGGAAGCATGGAAAATGATCCATCAATCTCGCAACTTTGTGTGGATGGACCATACAGTGTTTGTGATCGTGTAATTTTTGGACATAGGTTTAGTGATTTTGATCCTAATAGGGAGCGGAAGCCAAGTGACTTTTCATCTTCTCGCAGACCAAGTGACTATACCTCTTTTCATAGGCCAAGTGATTATTCATCTGGTCATAGGCCTAGTGACTATTCCTGCGGACAAAGGCCAAGTGATGTCTCCAGATGGGGCTCATCAGATGATGAGTATGGACCCTGGAGATTCACCCTACCCGAATCGTTTTCACCTGTAACGAATAGAGGGTATGCTCCTGCGGAAAAATGGTTATAGAATGCCCCGAAATTCAACCCTACTGTTTAGCAGCAAGTAAACAAATGGTTGGTATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327177" ref_strand="+" ref_description="SGN-E327177 [cTOC-18-B10]">
      <seq>ccagattttgattttattgagtgattctgaatatataattcagaatttgaaagaagagtgatgcaatgagggatgagtattcaaagagaagcaagctgtcttggtccagaaaattggttaggaaatggttcagttcaaagggaaaagctgtagaatttgaatctgtttatggaggaagttatgagcggagaacaagcatcttggagtgggaacattgcgcaatcaagaagaccaaaacagagaaatcaaccaggtgtatggagcatctcccacgggggagtgttagtcttgatcgccctaagattataaatgtacaagattatagactctttgtgtctacatggaatgtgggtggagaatcgccgctaagcaatttgaatctagatgaatggcttcattcttcaccccctgcagatatctatgtgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27557" stop="25491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27257" g_stop="27163" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27162" i_stop="27047" i_length="116">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27046" g_stop="26968" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="174" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26967" i_stop="26259" i_length="709">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26258" g_stop="26193" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="240" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26192" i_stop="26080" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26079" g_stop="25995" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="325" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25994" i_stop="25894" i_length="101">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25893" g_stop="25791" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="428" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E327177" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27257" e_stop="27163"/>
          <exon e_start="27046" e_stop="26968"/>
          <exon e_start="26258" e_stop="26193"/>
          <exon e_start="26079" e_stop="25995"/>
          <exon e_start="25893" e_stop="25791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGATTTTGATTTTATTGAGTGATTCTGAATATATAATTCAGAATTTGAAAGAAGAGTGATGCAATGAGGGATGAGTATTCAAAGAGAAGCAAGGTGAATACTCATAGCACAACCCCTTTTCTCCTTTTGCTTTCATTTTTCTTTGGAAAATGCAATTTTTGGGGTTTTGTACTTTGATTTCTGACATTTTTGCCCTTTGATTTCTGAAGCTGTCTTGGTCCAGAAAATTGGTTAGGAAATGGTTCAGTTCAAAGGGAAAAGCTGTAGAATTTGAATCTGTTTATGGAGGTCAGCATCTTATTTTTTCTTAATTAGGTTTATGAATCTGTGTTTTACCCTTTTTCTTTTGAGGGGTTGAAATGTTTATTCTGAATTGGGTTTTTCTTCTGGGGTGACTAAAACTAGTAGATTGTAACTTACAAAATTTAGTCAAATCTTCGTATGGTCACTCCACTGATACGCTAAGAAAGTCGCTTTCTTTGTTGAAGAAAATCGGAATTAAGAGTAAAGACGGCTTTTTTGAGATACTAACTATTAGTTGAGTAACATTCTAAATAGAATATTTTGTTTTATTCTTGTGTTAAAACTTTGCGTGATGGATAATAATTTCTGTCTGCAGCACATGTGTTTGGTGATTAGTGAAGGTTTTGTCTCATATTGAAATTGTATTTATTCACTGTCTTTACCTCCAGTAGAAATTGATGGGTCTCTCCCCTTAAGATTAAGGTAAACATAATCATTCCTAATTTTGTGAAAACTCAGTCGGTGTACTAAGTTCCTGCTACGTGTGAGGTTCGGAGAGGGACTGATCACAACTTCACAAGGGTATTGTATGCAGCCTTACTATGCATTTCTTCAAGAGACGGTCTCCATAGCTCGAACCCATGATTTGTGCAATAGGCTGTTTCCAATTTTTGTGATTTGTTTAAATTGTTGTAAGTTATAGTTTTTTACCAACTCTTCAATTCGGAACTAATGTTGATCTTCTCTTCTTTAGGAAGTTATGAGCGGAGAACAAGCATCTTGGAGTGGGAACATTGCGCAATCAAGAAGACCAAAACAGGTTAGTGGCACGATTAATATTCCAAATCCTTATAATACCCTATGTAGTATTTAAGAGATTCTTCTTACGTGACTTGAGTTAATTCTAGTCTCTTTGCCCTCTCAAATGAGCAGAGAAATCAACCAGGTGTATGGAGCATCTCCCACGGGGGAGTGTTAGTCTTGATCGCCCTAAGATTATAAATGTACAAGATTATAGGTTTGTCTTCTTGATAGATTTTTCAGATTTTGTCTCTTTTTCCTATATAGTTCACTACTCACTACATGAACTTTTTTTCGCTTTATTTCTTATTGCCTCAGACTCTTTGTGTCTACATGGAATGTGGGTGGAGAATCGCCGCTAAGCAATTTGAATCTAGATGAATGGCTTCATTCTTCACCCCCTGCAGATATCTATGTGCTT</genome_strand>
        <mrna_strand>CCAGATTTTGATTTTATTGAGTGATTCTGAATATATAATTCAGAATTTGAAAGAAGAGTGATGCAATGAGGGATGAGTATTCAAAGAGAAGCAAG....................................................................................................................CTGTCTTGGTCCAGAAAATTGGTTAGGAAATGGTTCAGTTCAAAGGGAAAAGCTGTAGAATTTGAATCTGTTTATGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTATGAGCGGAGAACAAGCATCTTGGAGTGGGAACATTGCGCAATCAAGAAGACCAAAACAG.................................................................................................................AGAAATCAACCAGGTGTATGGAGCATCTCCCACGGGGGAGTGTTAGTCTTGATCGCCCTAAGATTATAAATGTACAAGATTATAG.....................................................................................................ACTCTTTGTGTCTACATGGAATGTGGGTGGAGAATCGCCGCTAAGCAATTTGAATCTAGATGAATGGCTTCATTCTTCACCCCCTGCAGATATCTATGTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547383" ref_strand="+" ref_description="SGN-E547383 [TUS-71-D19]">
      <seq>tattgctgtgtttttcatcgttatggtgacaatgtttgcatcttcaaatgtaaatgttgttgaggcacaacaagaacttgcatataaagagtgctatgaaaatggcatgaaacttggtgcgactgaagaaagtgtcaaaagagaatgcacaaatatcgtcaaggaccataatatgaatgtctagaacacattaaggaagtgatatttttcattttctaatctttttggctatgcttttgtcattggcttttatatatgttgtttgacaacaaaaaaaaatgttaacataaagaataaatttcaattcagaaaaaaaaaagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37951" stop="37048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37652" g_stop="37350" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="308" polyA_stop="319"/>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E547383" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37652" e_stop="37350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGCTGTGTTGTTCATCGTTATGGTGACAATGTTTGCATCTTCAAATGTAAATGTTGTTGAGGCACAACAAGAACTTGCATATAAAGAGTGCTATGAAAATGGCATGAAACTTGGTGCGACCGAAGAAAGTGTCAAAAGAGAATGCAGAAATATCGTTAGGGACCATGATATTAAAACCTAAAACACATTAAAGAAGTGATATTTTTCACTTCTTTATCTTTTTTGGCTATGATTTTTTCATTGGCTTTAATATATGTTGTTTGACAACCCAAAAAAATAAATATGTAACATAAAGAATAA</genome_strand>
        <mrna_strand>TATTGCTGTGTTTTTCATCGTTATGGTGACAATGTTTGCATCTTCAAATGTAAATGTTGTTGAGGCACAACAAGAACTTGCATATAAAGAGTGCTATGAAAATGGCATGAAACTTGGTGCGACTGAAGAAAGTGTCAAAAGAGAATGCACAAATATCGTCAAGGACCATAATATGAATGTCTAGAACACATTAAGGAAGTGATATTTTTCATTTTCTAATC-TTTTTGGCTATGCTTTTGTCATTGGCTTTTATATATGTTGTTTGACAA--C-AAAAAA-AAATGT-TAACATAAAGAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746116" ref_strand="+" ref_description="SGN-E746116 [GI|47104938]">
      <seq>ggatgtgtaaatcaacagagtaaaagaagaaccatcaaaaatggtgataactagtacttcctctgttacttgttctactgtttttgatattggaaattacaagactaagctattgaaaatcgagccacaaacatgtagcaaacacaattctcctccaaaatctctgttaattgggaccccatcagaagcaggaaacttcccagtattgatatttctccatggctatcttctttacaattctttctattcacaacttattcaacatctctcttctcatggcttcattgttgttgctcctcagttatatttagtggaaggagcagatgcaaccgaggatatcaaatcgacagctgaagtcacccattggttatctgaaggattgcagcatcaccttccacctgatgttgagccaaacttgacgaaacttggactagcaggccatagccgtgggggaaaagttgcattttcgctagctcttggtagacttgctagtgacctgaaattttcagcgttgatcggtgttgatcctgtggatggaatggagaaaggaaagcaaactccgccatcagttctcacctacgttccgcgttccttcattaatcttgatatgcctgtgatggtaattggctcgggtttgggagaagttaaaaagaatcctctgttccctgcttgtgctcctaaaggggtgaatcatcgcgatttctacaacgaatgttgcaagccagcttgttactttgttgcaaaggattatggacataatgatatgttagatgaggagaccaaagggattcgaggcaaggctacttattgtttgtgcaagaaagggaaatctagagagcccatgaggagatttgttggaggggttttggtcgcatttttggaagcttatttggaaggtaattccagccacttgatagctattagagatggccatgttgcactgcctgtagagctccaagatattgattttcttgtctaagctatggttgtggttatattgtacccttcgctagcatgtatccaaaccatagccgtatatgtgtctatttattcaatttaaatatttacttgtgcacagctaaaattgaagtgcatagaggccaaattaaaatcatagaatcgatactattaagagctcagttgcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="+" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38843" stop="40910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39142" g_stop="39442" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39443" i_stop="39762" i_length="320">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39763" g_stop="40620" g_length="858"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="1159" r_length="858" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="+" ref_id="SGN-E746116" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1159</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39142" e_stop="39442"/>
          <exon e_start="39763" e_stop="40620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATGTGTAAATCAACAGAGTAAAAGAAGAACCATCAAAAATGGTGATAACTAGTACTTCCTCTGTTACTTGTTCTACTGTTTTTGATATTGGAAATTACAAGACTAAGCTATTGAAAATCGAGCCACAAACATGTAGCAAACACAATTCTCCTCCAAAATCTCTGTTAATTGGGACCCCATCAGAAGCAGGAAACTTCCCAGTATTGATATTTCTCCATGGCTATCTTCTTTACAATTCTTTCTATTCACAACTTATTCAACATCTCTCTTCTCATGGCTTCATTGTTGTTGCTCCTCAGGTTTCTTCCTCTCTCTGTTTTTTTTTCGCTTTATTGTGCTCCAAGAAATTGATAGTTTTGTACACATTTTTAATTTACCTGGCATCCAAACATCTCACCGGAGGTTGCCACGATAAATAAAAAATTGTACAAAATCTCAATTTAGTTAACGTGTGTGTCTGAAATATTGATCCTAGTCTAATATAACAGGGTACTTGTGCGTTATTCCTATGAACGTTATTTCTATAACTATCATTAACAGCTTTTGGATTGTGAAATTAGTTGGTTCTAACTACTGCTAGTCTGGGTACGGGTTTGCTAATGAACAATTTTCATTTTAGTTATATTTAGTGGAAGGAGCAGATGCAACCGAGGATATCAAATCGACAGCTGAAGTCACCCATTGGTTATCTGAAGGATTGCAGCATCACCTTCCACCTGATGTTGAGCCAAACTTGACGAAACTTGGACTAGCAGGCCATAGCCGTGGGGGAAAAGTTGCATTTTCGCTAGCTCTTGGTAGACTTGCTAGTGACCTGAAATTTTCAGCGTTGATCGGTGTTGATCCTGTGGATGGAATGGAGAAAGGAAAGCAAACTCCGCCATCAGTTCTCACCTACGTTCCGCGTTCCTTCATTAATCTTGATATGCCTGTGATGGTAATTGGCTCGGGTTTGGGAGAAGTTAAAAAGAATCCTCTGTTCCCTGCTTGTGCTCCTAAAGGGGTGAATCATCGCGATTTCTACAACGAATGTTGCAAGCCAGCTTGTTACTTTGTTGCAAAGGATTATGGACATAATGATATGTTAGATGAGGAGACCAAAGGGATTCGAGGCAAGGCTACTTATTGTTTGTGCAAGAAAGGGAAATCTAGAGAGCCCATGAGGAGATTTGTTGGAGGGGTTTTGGTTGCATTTTTGGAAGCTTATTTGGAAGGTAATTCCAGCCACTTGATAGCTATTAGAGATGGCCATGTTGCACTGCCTGTAGAGCTCCAAGATATTGATTTTCTTGTCTAAGCTATGGTTGTGGTTATATTGTACCCTTCGCTAGCATGTATCCAAACCATAGCCGTATATGTGTCTATTTATTCAATTTAAATATTTACTTGTGCACAGCTAAAATTGAAGTGCATAGAGGCCAAATTAAAATCATAGAATCGATACTATTAAGAGCTCAGTTGCAAAGACTCCTCCAAT</genome_strand>
        <mrna_strand>GGATGTGTAAATCAACAGAGTAAAAGAAGAACCATCAAAAATGGTGATAACTAGTACTTCCTCTGTTACTTGTTCTACTGTTTTTGATATTGGAAATTACAAGACTAAGCTATTGAAAATCGAGCCACAAACATGTAGCAAACACAATTCTCCTCCAAAATCTCTGTTAATTGGGACCCCATCAGAAGCAGGAAACTTCCCAGTATTGATATTTCTCCATGGCTATCTTCTTTACAATTCTTTCTATTCACAACTTATTCAACATCTCTCTTCTCATGGCTTCATTGTTGTTGCTCCTCAG................................................................................................................................................................................................................................................................................................................................TTATATTTAGTGGAAGGAGCAGATGCAACCGAGGATATCAAATCGACAGCTGAAGTCACCCATTGGTTATCTGAAGGATTGCAGCATCACCTTCCACCTGATGTTGAGCCAAACTTGACGAAACTTGGACTAGCAGGCCATAGCCGTGGGGGAAAAGTTGCATTTTCGCTAGCTCTTGGTAGACTTGCTAGTGACCTGAAATTTTCAGCGTTGATCGGTGTTGATCCTGTGGATGGAATGGAGAAAGGAAAGCAAACTCCGCCATCAGTTCTCACCTACGTTCCGCGTTCCTTCATTAATCTTGATATGCCTGTGATGGTAATTGGCTCGGGTTTGGGAGAAGTTAAAAAGAATCCTCTGTTCCCTGCTTGTGCTCCTAAAGGGGTGAATCATCGCGATTTCTACAACGAATGTTGCAAGCCAGCTTGTTACTTTGTTGCAAAGGATTATGGACATAATGATATGTTAGATGAGGAGACCAAAGGGATTCGAGGCAAGGCTACTTATTGTTTGTGCAAGAAAGGGAAATCTAGAGAGCCCATGAGGAGATTTGTTGGAGGGGTTTTGGTCGCATTTTTGGAAGCTTATTTGGAAGGTAATTCCAGCCACTTGATAGCTATTAGAGATGGCCATGTTGCACTGCCTGTAGAGCTCCAAGATATTGATTTTCTTGTCTAAGCTATGGTTGTGGTTATATTGTACCCTTCGCTAGCATGTATCCAAACCATAGCCGTATATGTGTCTATTTATTCAATTTAAATATTTACTTGTGCACAGCTAAAATTGAAGTGCATAGAGGCCAAATTAAAATCATAGAATCGATACTATTAAGAGCTCAGTTGCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540802" ref_strand="+" ref_description="SGN-E540802 [TUS-61-E6]">
      <seq>gagtacttcctctgttacttgttctactgtttttgatattggaaattacaagactaagctattgaaaatcgagccacaaacatgtagcaaacacaattctcctccaaaatctctgttaattgggaccccatcagaagcaggaaacttcccagtattgatatttctccatggctatcttctttacaattctttctattcacaacttattcaacatctctcttctcatggcttcattgttgttgctcctcagttatatttagtggaaggagcagatgcaaccgaggatatcaaatcgacagctgaagtcacccattggttatctgaaggattgcagcatcaccttccacctgatgttgagccaaacttgacgaaacttggactagcaggccatagccgtgggggaaaagttgcattttcgctagctcttggtagacttgctagtgacctgaaattttcagcgttgatcggtgttgatcctgtggatggaatggagaaaggaaagcaaactccgccatcagttctcacctacgttccgcgttccttcattaatcttgatatgcctgtgatggtaattggctcgggtttgggagaagttaaaaagaatcctctgttccctgcttgtgctcctaaaggggtgaatcatcgcgatttctacaacgaatgttgcaagccagcttgttacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="+" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38894" stop="40497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39193" g_stop="39442" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39443" i_stop="39762" i_length="320">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39763" g_stop="40197" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="685" r_length="435" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="+" ref_id="SGN-E540802" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39193" e_stop="39442"/>
          <exon e_start="39763" e_stop="40197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTACTTCCTCTGTTACTTGTTCTACTGTTTTTGATATTGGAAATTACAAGACTAAGCTATTGAAAATCGAGCCACAAACATGTAGCAAACACAATTCTCCTCCAAAATCTCTGTTAATTGGGACCCCATCAGAAGCAGGAAACTTCCCAGTATTGATATTTCTCCATGGCTATCTTCTTTACAATTCTTTCTATTCACAACTTATTCAACATCTCTCTTCTCATGGCTTCATTGTTGTTGCTCCTCAGGTTTCTTCCTCTCTCTGTTTTTTTTTCGCTTTATTGTGCTCCAAGAAATTGATAGTTTTGTACACATTTTTAATTTACCTGGCATCCAAACATCTCACCGGAGGTTGCCACGATAAATAAAAAATTGTACAAAATCTCAATTTAGTTAACGTGTGTGTCTGAAATATTGATCCTAGTCTAATATAACAGGGTACTTGTGCGTTATTCCTATGAACGTTATTTCTATAACTATCATTAACAGCTTTTGGATTGTGAAATTAGTTGGTTCTAACTACTGCTAGTCTGGGTACGGGTTTGCTAATGAACAATTTTCATTTTAGTTATATTTAGTGGAAGGAGCAGATGCAACCGAGGATATCAAATCGACAGCTGAAGTCACCCATTGGTTATCTGAAGGATTGCAGCATCACCTTCCACCTGATGTTGAGCCAAACTTGACGAAACTTGGACTAGCAGGCCATAGCCGTGGGGGAAAAGTTGCATTTTCGCTAGCTCTTGGTAGACTTGCTAGTGACCTGAAATTTTCAGCGTTGATCGGTGTTGATCCTGTGGATGGAATGGAGAAAGGAAAGCAAACTCCGCCATCAGTTCTCACCTACGTTCCGCGTTCCTTCATTAATCTTGATATGCCTGTGATGGTAATTGGCTCGGGTTTGGGAGAAGTTAAAAAGAATCCTCTGTTCCCTGCTTGTGCTCCTAAAGGGGTGAATCATCGCGATTTCTACAACGAATGTTGCAAGCCAGCTTGTTACTTT</genome_strand>
        <mrna_strand>GAGTACTTCCTCTGTTACTTGTTCTACTGTTTTTGATATTGGAAATTACAAGACTAAGCTATTGAAAATCGAGCCACAAACATGTAGCAAACACAATTCTCCTCCAAAATCTCTGTTAATTGGGACCCCATCAGAAGCAGGAAACTTCCCAGTATTGATATTTCTCCATGGCTATCTTCTTTACAATTCTTTCTATTCACAACTTATTCAACATCTCTCTTCTCATGGCTTCATTGTTGTTGCTCCTCAG................................................................................................................................................................................................................................................................................................................................TTATATTTAGTGGAAGGAGCAGATGCAACCGAGGATATCAAATCGACAGCTGAAGTCACCCATTGGTTATCTGAAGGATTGCAGCATCACCTTCCACCTGATGTTGAGCCAAACTTGACGAAACTTGGACTAGCAGGCCATAGCCGTGGGGGAAAAGTTGCATTTTCGCTAGCTCTTGGTAGACTTGCTAGTGACCTGAAATTTTCAGCGTTGATCGGTGTTGATCCTGTGGATGGAATGGAGAAAGGAAAGCAAACTCCGCCATCAGTTCTCACCTACGTTCCGCGTTCCTTCATTAATCTTGATATGCCTGTGATGGTAATTGGCTCGGGTTTGGGAGAAGTTAAAAAGAATCCTCTGTTCCCTGCTTGTGCTCCTAAAGGGGTGAATCATCGCGATTTCTACAACGAATGTTGCAAGCCAGCTTGTTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291124" ref_strand="+" ref_description="SGN-E291124 [cLET-8-F17]">
      <seq>agtacttcctctgttacttgttctactgtttttgatattggaaattacaagactaagctattgaaaatcgagccacaaacatgtagcaaacacaattctcctccaaaatctctgttaattgggaccccatcagaagcaggaaacttcccagtattgatatttctccatggctatcttctttacaattctttctattcacaacttattcaacatctctcttctcatggcttcattgttgttgctcctcagttatatttagtggaaggagcagatgcaaccgaggatatcaaatcgacagctgaagtcacccattggttatctgaaggattgcagcatcaccttccacctgatgttgagccaaacttgacgaaacttggactagcaggccatagccgtgggggaaaagttgcattttcgctagctcttggtagacttgctagtgacctgaaattttcagcgttgatcggtgttgatcctgtggatggaatggagaaaggaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="+" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38894" stop="40315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39194" g_stop="39442" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39443" i_stop="39762" i_length="320">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39763" g_stop="40015" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="502" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="+" ref_id="SGN-E291124" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39194" e_stop="39442"/>
          <exon e_start="39763" e_stop="40015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACTTCCTCTGTTACTTGTTCTACTGTTTTTGATATTGGAAATTACAAGACTAAGCTATTGAAAATCGAGCCACAAACATGTAGCAAACACAATTCTCCTCCAAAATCTCTGTTAATTGGGACCCCATCAGAAGCAGGAAACTTCCCAGTATTGATATTTCTCCATGGCTATCTTCTTTACAATTCTTTCTATTCACAACTTATTCAACATCTCTCTTCTCATGGCTTCATTGTTGTTGCTCCTCAGGTTTCTTCCTCTCTCTGTTTTTTTTTCGCTTTATTGTGCTCCAAGAAATTGATAGTTTTGTACACATTTTTAATTTACCTGGCATCCAAACATCTCACCGGAGGTTGCCACGATAAATAAAAAATTGTACAAAATCTCAATTTAGTTAACGTGTGTGTCTGAAATATTGATCCTAGTCTAATATAACAGGGTACTTGTGCGTTATTCCTATGAACGTTATTTCTATAACTATCATTAACAGCTTTTGGATTGTGAAATTAGTTGGTTCTAACTACTGCTAGTCTGGGTACGGGTTTGCTAATGAACAATTTTCATTTTAGTTATATTTAGTGGAAGGAGCAGATGCAACCGAGGATATCAAATCGACAGCTGAAGTCACCCATTGGTTATCTGAAGGATTGCAGCATCACCTTCCACCTGATGTTGAGCCAAACTTGACGAAACTTGGACTAGCAGGCCATAGCCGTGGGGGAAAAGTTGCATTTTCGCTAGCTCTTGGTAGACTTGCTAGTGACCTGAAATTTTCAGCGTTGATCGGTGTTGATCCTGTGGATGGAATGGAGAAAGGAAAGC</genome_strand>
        <mrna_strand>AGTACTTCCTCTGTTACTTGTTCTACTGTTTTTGATATTGGAAATTACAAGACTAAGCTATTGAAAATCGAGCCACAAACATGTAGCAAACACAATTCTCCTCCAAAATCTCTGTTAATTGGGACCCCATCAGAAGCAGGAAACTTCCCAGTATTGATATTTCTCCATGGCTATCTTCTTTACAATTCTTTCTATTCACAACTTATTCAACATCTCTCTTCTCATGGCTTCATTGTTGTTGCTCCTCAG................................................................................................................................................................................................................................................................................................................................TTATATTTAGTGGAAGGAGCAGATGCAACCGAGGATATCAAATCGACAGCTGAAGTCACCCATTGGTTATCTGAAGGATTGCAGCATCACCTTCCACCTGATGTTGAGCCAAACTTGACGAAACTTGGACTAGCAGGCCATAGCCGTGGGGGAAAAGTTGCATTTTCGCTAGCTCTTGGTAGACTTGCTAGTGACCTGAAATTTTCAGCGTTGATCGGTGTTGATCCTGTGGATGGAATGGAGAAAGGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540799" ref_strand="+" ref_description="SGN-E540799 [TUS-61-E6](-)">
      <seq>cctcagttatattagtgggaaggagcagatgcaaccgaggatatcaaatcgacagctgaagtcacccattggttatctgaaggattgcagcatcactttccacctgatgttgagccaaacttgacgaaacttggactagcaggccatagccgtgggggaaaagttgcattttcgctagctcttggtagacttgctagtgacctgaaattttcagcgttgatcggtgttgatcctgtggatggaatggagaaaggaaagcaaactccgccatcagttctcacctacgttccgcgttccttcattaatcttgatatgcctgtgatggtaattggctcgggtttgggagaagttaaaaagaatcctctgttccctgcttgtgctcctaaaggggtgaatcatcgcgatttctacaacgaatgttgcaagccagcttgttactttgttgcaaaggattatggacataatgatatgttagatgaggagaccaaagggattcgaggcaaggctacttattgtttgtgcaagaaagggaaatctagagagcccatgaggagatttgttggaggggttttggttgcatttttggaagctcatttggaaggtaattccagccacttgatagctattagagatggccatgttgcactgcctgtagagctcccaagatattgattttcttgtctaagctatggttgtggttatattgtacccttcgctagcatgtatcccaaacccatagcccgtatatgtgtctatttattcaatttaaatatttacttgtgcacagctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="+" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39459" stop="40845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39763" g_stop="40553" g_length="791"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="801" r_length="795" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="+" ref_id="SGN-E540799" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39763" e_stop="40553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATTTAGTGGAAGGAGCAGATGCAACCGAGGATATCAAATCGACAGCTGAAGTCACCCATTGGTTATCTGAAGGATTGCAGCATCACCTTCCACCTGATGTTGAGCCAAACTTGACGAAACTTGGACTAGCAGGCCATAGCCGTGGGGGAAAAGTTGCATTTTCGCTAGCTCTTGGTAGACTTGCTAGTGACCTGAAATTTTCAGCGTTGATCGGTGTTGATCCTGTGGATGGAATGGAGAAAGGAAAGCAAACTCCGCCATCAGTTCTCACCTACGTTCCGCGTTCCTTCATTAATCTTGATATGCCTGTGATGGTAATTGGCTCGGGTTTGGGAGAAGTTAAAAAGAATCCTCTGTTCCCTGCTTGTGCTCCTAAAGGGGTGAATCATCGCGATTTCTACAACGAATGTTGCAAGCCAGCTTGTTACTTTGTTGCAAAGGATTATGGACATAATGATATGTTAGATGAGGAGACCAAAGGGATTCGAGGCAAGGCTACTTATTGTTTGTGCAAGAAAGGGAAATCTAGAGAGCCCATGAGGAGATTTGTTGGAGGGGTTTTGGTTGCATTTTTGGAAGCTTATTTGGAAGGTAATTCCAGCCACTTGATAGCTATTAGAGATGGCCATGTTGCACTGCCTGTAGAGCT-CCAAGATATTGATTTTCTTGTCTAAGCTATGGTTGTGGTTATATTGTACCCTTCGCTAGCATGTAT-CCAAA-CCATAG-CCGTATATGTGTCTATTTATTCAATTTAAATATTTACTTGTGCACAGCTAAAATTGAAGTG</genome_strand>
        <mrna_strand>TTATATTAGTGGGAAGGAGCAGATGCAACCGAGGATATCAAATCGACAGCTGAAGTCACCCATTGGTTATCTGAAGGATTGCAGCATCACTTTCCACCTGATGTTGAGCCAAACTTGACGAAACTTGGACTAGCAGGCCATAGCCGTGGGGGAAAAGTTGCATTTTCGCTAGCTCTTGGTAGACTTGCTAGTGACCTGAAATTTTCAGCGTTGATCGGTGTTGATCCTGTGGATGGAATGGAGAAAGGAAAGCAAACTCCGCCATCAGTTCTCACCTACGTTCCGCGTTCCTTCATTAATCTTGATATGCCTGTGATGGTAATTGGCTCGGGTTTGGGAGAAGTTAAAAAGAATCCTCTGTTCCCTGCTTGTGCTCCTAAAGGGGTGAATCATCGCGATTTCTACAACGAATGTTGCAAGCCAGCTTGTTACTTTGTTGCAAAGGATTATGGACATAATGATATGTTAGATGAGGAGACCAAAGGGATTCGAGGCAAGGCTACTTATTGTTTGTGCAAGAAAGGGAAATCTAGAGAGCCCATGAGGAGATTTGTTGGAGGGGTTTTGGTTGCATTTTTGGAAGCTCATTTGGAAGGTAATTCCAGCCACTTGATAGCTATTAGAGATGGCCATGTTGCACTGCCTGTAGAGCTCCCAAGATATTGATTTTCTTGTCTAAGCTATGGTTGTGGTTATATTGTACCCTTCGCTAGCATGTATCCCAAACCCATAGCCCGTATATGTGTCTATTTATTCAATTTAAATATTTACTTGTGCACAGCTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539094" ref_strand="+" ref_description="SGN-E539094 [TUS-58-K21](-)">
      <seq>cttatttggaaggtaattccagccacttgatagctattagagatggccatgttgcactgcctgtagagctccaagatattgattttcttgtctaagctatggttgtggttatattgtacccttcgctagcatgtatccaaaccatagccgtatatgtgtctatttattcaatttaaatatttacttgtgcacagctaaaattgaagtgcatagaggccaaattaaaatcatttttagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="+" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40046" stop="40876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40346" g_stop="40587" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="+" ref_id="SGN-E539094" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40346" e_stop="40587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTTGGAAGGTAATTCCAGCCACTTGATAGCTATTAGAGATGGCCATGTTGCACTGCCTGTAGAGCTCCAAGATATTGATTTTCTTGTCTAAGCTATGGTTGTGGTTATATTGTACCCTTCGCTAGCATGTATCCAAACCATAGCCGTATATGTGTCTATTTATTCAATTTAAATATTTACTTGTGCACAGCTAAAATTGAAGTGCATAGAGGCCAAATTAAAATCATAGAATCGATAC</genome_strand>
        <mrna_strand>CTTATTTGGAAGGTAATTCCAGCCACTTGATAGCTATTAGAGATGGCCATGTTGCACTGCCTGTAGAGCTCCAAGATATTGATTTTCTTGTCTAAGCTATGGTTGTGGTTATATTGTACCCTTCGCTAGCATGTATCCAAACCATAGCCGTATATGTGTCTATTTATTCAATTTAAATATTTACTTGTGCACAGCTAAAATTGAAGTGCATAGAGGCCAAATTAAAATCAT-TTTTAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539261" ref_strand="+" ref_description="SGN-E539261 [TUS-58-O21]">
      <seq>cttatttggaaggtaattccagccacttgatagctattagagatggccatgttgcactgcctgcagagctccaagatattgattttcttgtctaagctatggttgtggttatattgtacccttcgctagcatgtatccaaaccatagccgtatatgtgtctatttattcaatttaaatatttacttgtgcacagctaaaattgaagtgcatagaggccaaattaaaatcataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="+" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40046" stop="40880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40346" g_stop="40587" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="+" ref_id="SGN-E539261" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40346" e_stop="40587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTTGGAAGGTAATTCCAGCCACTTGATAGCTATTAGAGATGGCCATGTTGCACTGCCTGTAGAGCTCCAAGATATTGATTTTCTTGTCTAAGCTATGGTTGTGGTTATATTGTACCCTTCGCTAGCATGTATCCAAACCATAGCCGTATATGTGTCTATTTATTCAATTTAAATATTTACTTGTGCACAGCTAAAATTGAAGTGCATAGAGGCCAAATTAAAATCATAGAATCGATAC</genome_strand>
        <mrna_strand>CTTATTTGGAAGGTAATTCCAGCCACTTGATAGCTATTAGAGATGGCCATGTTGCACTGCCTGCAGAGCTCCAAGATATTGATTTTCTTGTCTAAGCTATGGTTGTGGTTATATTGTACCCTTCGCTAGCATGTATCCAAACCATAGCCGTATATGTGTCTATTTATTCAATTTAAATATTTACTTGTGCACAGCTAAAATTGAAGTGCATAGAGGCCAAATTAAAATCATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539087" ref_strand="+" ref_description="SGN-E539087 [TUS-58-K17](-)">
      <seq>cttatttggaaggtaattccagccacttgatagctattagagatggccatgttgcactgcctgtagagctccaagatattgattttcttgtctaagctatggttgtggttatattgtacccttcgctagcatgtatccaaaccatagccgtatatgtgtctatttattcaatttaaatatttacttgtgcacagctaaaattgaagtgcatagaggccaaattaaaatcataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="+" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40046" stop="40880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40346" g_stop="40587" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="+" ref_id="SGN-E539087" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40346" e_stop="40587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTTGGAAGGTAATTCCAGCCACTTGATAGCTATTAGAGATGGCCATGTTGCACTGCCTGTAGAGCTCCAAGATATTGATTTTCTTGTCTAAGCTATGGTTGTGGTTATATTGTACCCTTCGCTAGCATGTATCCAAACCATAGCCGTATATGTGTCTATTTATTCAATTTAAATATTTACTTGTGCACAGCTAAAATTGAAGTGCATAGAGGCCAAATTAAAATCATAGAATCGATAC</genome_strand>
        <mrna_strand>CTTATTTGGAAGGTAATTCCAGCCACTTGATAGCTATTAGAGATGGCCATGTTGCACTGCCTGTAGAGCTCCAAGATATTGATTTTCTTGTCTAAGCTATGGTTGTGGTTATATTGTACCCTTCGCTAGCATGTATCCAAACCATAGCCGTATATGTGTCTATTTATTCAATTTAAATATTTACTTGTGCACAGCTAAAATTGAAGTGCATAGAGGCCAAATTAAAATCATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539254" ref_strand="+" ref_description="SGN-E539254 [TUS-58-O17]">
      <seq>cttatttggaaggtaattccagccacttgatagctattagagatggccatgttgcactgcctgtagagctccaagatattgattttcttgtctaagctatggttgtggttatattgtacccttcgctagcatgtatccaaaccatagccgtatatgtgtctatttattcaatttaaatatttacttgtgcacagctaaaattgaagtgcatagaggccaaattaaaatcataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="+" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40046" stop="40880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40346" g_stop="40587" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="+" ref_id="SGN-E539254" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40346" e_stop="40587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTTGGAAGGTAATTCCAGCCACTTGATAGCTATTAGAGATGGCCATGTTGCACTGCCTGTAGAGCTCCAAGATATTGATTTTCTTGTCTAAGCTATGGTTGTGGTTATATTGTACCCTTCGCTAGCATGTATCCAAACCATAGCCGTATATGTGTCTATTTATTCAATTTAAATATTTACTTGTGCACAGCTAAAATTGAAGTGCATAGAGGCCAAATTAAAATCATAGAATCGATAC</genome_strand>
        <mrna_strand>CTTATTTGGAAGGTAATTCCAGCCACTTGATAGCTATTAGAGATGGCCATGTTGCACTGCCTGTAGAGCTCCAAGATATTGATTTTCTTGTCTAAGCTATGGTTGTGGTTATATTGTACCCTTCGCTAGCATGTATCCAAACCATAGCCGTATATGTGTCTATTTATTCAATTTAAATATTTACTTGTGCACAGCTAAAATTGAAGTGCATAGAGGCCAAATTAAAATCATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280979" ref_strand="+" ref_description="SGN-E280979 [cLER-7-E14]">
      <seq>ttatttggaaggtaattccagccacttgatagctattagagatggccatgttgcactgcctgtagagctccaagatattgattttcttgtctaagctatggttgtggttatattgtacccttcgctagcatgtatccaaaccatagccgtatatgtgtctatttattcaatttaaatatttacttgtgcacagctaaaattgaagtgcatagaggccaaattaaaatcataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="+" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40047" stop="40880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40347" g_stop="40587" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="+" ref_id="SGN-E280979" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>241</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40347" e_stop="40587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTGGAAGGTAATTCCAGCCACTTGATAGCTATTAGAGATGGCCATGTTGCACTGCCTGTAGAGCTCCAAGATATTGATTTTCTTGTCTAAGCTATGGTTGTGGTTATATTGTACCCTTCGCTAGCATGTATCCAAACCATAGCCGTATATGTGTCTATTTATTCAATTTAAATATTTACTTGTGCACAGCTAAAATTGAAGTGCATAGAGGCCAAATTAAAATCATAGAATCGATAC</genome_strand>
        <mrna_strand>TTATTTGGAAGGTAATTCCAGCCACTTGATAGCTATTAGAGATGGCCATGTTGCACTGCCTGTAGAGCTCCAAGATATTGATTTTCTTGTCTAAGCTATGGTTGTGGTTATATTGTACCCTTCGCTAGCATGTATCCAAACCATAGCCGTATATGTGTCTATTTATTCAATTTAAATATTTACTTGTGCACAGCTAAAATTGAAGTGCATAGAGGCCAAATTAAAATCATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598607" ref_strand="+" ref_description="SGN-E598607 [74281]">
      <seq>tcctatttcaggcaacaccgcagtcaggttctgctacatttttcttcataaccaacaaacttggtttcactccagaattcttaggccgccttaagcttgttacttccgttgcatcacttattggtgttgcgctttacaatggtttcttaaagaaagttcctttaaggaaaatattccttgtgacaactattattggttcagttcttgggatgacacaggttctgctggtaaccggattaaaccggaagtttggcattagtgatgagtggttttcaattggggattccttgattctatctgttcttggtcaggctttctttatgcctgttcttatattagctgcaagaatatgtccactgggaatggaggctactttctttgcaacccttatgtccatagccaatgggggaggtacccttgggggtctacttggtgcaggtctaactcacatccttggtgtcaccaaggacaaatttgataacttggctctcctaataattatctgcaatctcagctccctactgcctttaccactacttggccttcttcctcgagatgaacctgattcagatgagaatactgatatcgagatgacaccttattaaattcctgcgccttctctgcatataacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47471" stop="43834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47171" g_stop="47123" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47122" i_stop="47041" i_length="82">
            <donor d_prob="0.961" d_score="0.94"/>
            <acceptor a_prob="0.565" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47040" g_stop="46872" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="218" r_length="169" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46871" i_stop="46777" i_length="95">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46776" g_stop="46684" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="311" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46683" i_stop="44455" i_length="2229">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44454" g_stop="44134" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="634" r_length="323" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E598607" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E598607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47171" e_stop="47123"/>
          <exon e_start="47040" e_stop="46872"/>
          <exon e_start="46776" e_stop="46684"/>
          <exon e_start="44454" e_stop="44134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTATTTCAGACAACACCACAGTCAGGTTCTGCTACGTTTTTCTTCATGTACGCTCAATTTCTAGTCTCTTGTTCAGATTATTATTAAATGCAAGATGCAAGTTTTTAAACTGAAGTTTGTTGATTGTAGAACCAATAAACTTGGTTTCACTCCAGAATTTTTAGGCCGCCTTAAGCTTGTTACTTCAGTTGCATCACTTATTGGTGTTGCACTTTACAATGGTTTCTTAAAGAAAGTTCCTTTAAGGAAAATATTCCTTGTGACAACTATTATTGGTTCAGCTCTTGGGATGACACAGGTAGATGTCCAGAATATCTTCTGTTTTATTGTGTCTTGCCTGTTGGTCCTTTCCGGCAATTTTGATTGATTTATGTGTAATTGACGTGTTGATAGGTTCTGCTGGTAACTGGATTAAACCGAAAGTTTGGCATTAGTGATGAGTGGTTTTCAATTGGGGATTCCTTGATTCTATCTGTTCTTGGTCAGGTAATTATCTGTCTTGGTTCTGTCTTTTACTGGCCTAGGTTTGGATTGCTTCTCAGATTGATTAACAATCTCTACTTCTGTGATTCCCTTAATATACATAGAAAGAACATTCTGAATTTTGAACTCACTTTATAGTCCAAATATTTGCAGTTAATCACATAAAAAAAAGAAGTGCATTGAAAGCACATATATCAATTGACAGGACATAACAGTCAACATGGAACTGGAAAGAAACTTATTACAATTAACTAAAGAGGGTATGTGGCTGATAAGTATAGTGTAAAGCAGTTTGGAATTTCGTATGTCTATAGATTACAAGAATTCTACTCAGCAACAGATTCCAGTTAAGAACTGTAGGGACTGGAATTCAGCAATAGATTCTAGTTTAAGAACTATAATACTGAGCTGAAAAACTAGTGAACTTATGAATAATAGTGTTGCACATAAGTCTCAGGTTCAATTCCCAGTGGGGACAAAAAACACTATATTATTCTTGAGTTACTTGGTACATGTTGCTGGTGGAGGTAGCAGGTATGGTGCGCGAAAGCTGGCCTGGACACCACGGTCATAAAAAATAGAGATAAGTTTCAAAACACACCTAAATTATACCTTTTATTGAGTTTCATGCTTAAATTATTAAATTATTGAGAGTGTGAATTTCATACCTAAACTATCACTTTTTAGTTTGAGAAACATACCTCTCTCTTTTATATCACTCTCATCATGGTATGTTTAATAACTCTCTTTTATTTTTGAAGAAATTTATCACATCACACTTCACATGAAAAAAAACATTTAACCTTGATAAAAATTAAATAAATTATTAGTATTATTTAAATTTAAAATTTAAAAATTATTATCCCAAAAATATTATTTCTTTTTATAAAATAAAATGTAAAATAATTTTCTTATCCCACTCCATCACTCCACCCCACCCCACCCCACCCTCAAATACTAATTTAGATATTATTTTTTTAAAAAAAAAAATTCTACCCACCCCATTTAACCCTCCACTTTCAATTTTTTTTTCTCATTTTGTGTTAGATATATACATATCAAAAATATTTTTTACTTGCCGCTGCAAGATATTTTTTAATTTTTTACTTATTTATGTCATATTTGGTACACTAAGAGGAACTTTGTTTTCTAAAAATATATGTACATACATATCTAAGACAAAATGAGAAAAATGGAAAAAAGAATAAAAATTAGGAGCGGAGGTTACACAGGATGGGGTAGAATTTCATTTTTTTAAAAAATAAAATAATATCATTTTTTTTTGGGGGGGGGGGGGGGTACACGGAGGAAGTGGTGGAAGATTTTATCCATGTGAAATGTCATGTGTCAAGTTTTTTTCAAATAAAAGAGAGTGTATTACACGCACCACTTAGGTGTGTTTCTCAAACTAAAAAGTGATAGTTTAGGTATGAAACTCACACTCTCAATAGTTTAGATATGAAACTAGAAAAAAGGAGATAGTTTCGGTGTGTTTTTGACGCTTACCTCTAAAAAAAAATAGTGTTGCACATAAAGATGCAGGGAAGTTGCCATCTCTTTAGTATCCAGGTGTATTGTGACAATATCAATTCTAGGTGAAAAATTACTTGTACCAGGTGTTTACATTTATACCAGTGAGTGCACATTTGTTTGAAATATATACAATTATTACTTAGCCATGATTCATTAATATATAGTTTCACTTCGTTAAATCACTTGACCATGGTAACTTGTATTAATTTTGGGTAAACACCTTGTGCGGATAAGTATTTATATTCTGGCCTTCCCTTTTTCTGTTTTTAGCTATTTTAGTTAACCTCTTATAGCTATTTTCTTTTTCATACTTTCATTATCTTTTATTTGGACACTTGCACTAATTAAGAATCTAGTCTAGATTCAAAGTGTTGCTAAAGTGGTTAATAGTCTTACCTTAATAAGAGACAGGCTACATAGGTAAGGGACTGTTAGTTAAATGTTGAAGGATACACCTATATAACATTGTTGGTACTTGAAGTATTACCTAAGATCACTACATGGTTGTCCTAAGAAATTTACCCTTTTTAATGTAATGCCAGCTTTCGGGAAGTAATTCTAGAGTTCTACGAAGGCAGAAAAAGACGGAATCTCTAAATTTGGTTGATGATTCAGATTGATCAGTAGGTTTGATACTTATGAGACTAGAGGATAATGGTATCGTTTGCCTGGATTGTCTAACTTTATACTTCTTTTCAGGCTTTCTTCATGCCTGTTCTTGTATTAGCTGCAAGAATATGTCCAATGGGAATGGAGGCTACTTTCTTTGCAACCCTTATGTCCATAGCCAATGGGGGAGGTACCCTTGGGGGCCTACTTGGTGCAGGTCTAACTCACATCCTTGGTGTCACCAAGGACAAATTTGATAACTTGGCTATCCTAATAACTATCTGCAATCTCAGCTCCCTACTGCCTTTACCACTACTTGGCCTTCTTCCTCGAGATGAACCCGATTCAGAGGAGAATACTGATATTGAGATGACGCCATATTGAATTCAT--TCTTTCTCTGCATATAACATG</genome_strand>
        <mrna_strand>TCCTATTTCAGGCAACACCGCAGTCAGGTTCTGCTACATTTTTCTTCAT..................................................................................AACCAACAAACTTGGTTTCACTCCAGAATTCTTAGGCCGCCTTAAGCTTGTTACTTCCGTTGCATCACTTATTGGTGTTGCGCTTTACAATGGTTTCTTAAAGAAAGTTCCTTTAAGGAAAATATTCCTTGTGACAACTATTATTGGTTCAGTTCTTGGGATGACACAG...............................................................................................GTTCTGCTGGTAACCGGATTAAACCGGAAGTTTGGCATTAGTGATGAGTGGTTTTCAATTGGGGATTCCTTGATTCTATCTGTTCTTGGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCTTTATGCCTGTTCTTATATTAGCTGCAAGAATATGTCCACTGGGAATGGAGGCTACTTTCTTTGCAACCCTTATGTCCATAGCCAATGGGGGAGGTACCCTTGGGGGTCTACTTGGTGCAGGTCTAACTCACATCCTTGGTGTCACCAAGGACAAATTTGATAACTTGGCTCTCCTAATAATTATCTGCAATCTCAGCTCCCTACTGCCTTTACCACTACTTGGCCTTCTTCCTCGAGATGAACCTGATTCAGATGAGAATACTGATATCGAGATGACACCTTATTAAATTCCTGCGCCTTCTCTGCATATAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573834" ref_strand="+" ref_description="SGN-E573834 [33207]">
      <seq>attacattatgtcaaaaatgggatggaacgtcaaaatttgcatgactttagttgcaatattagtaatagggaataactacatgatttcaagaggagcaatggctcaatctaactgcatgaatgcatttttaagcatgtattcatgtcttagctatgtcactggatcaactccaaaaactccaccgtcgagctcttgctgctctgccctctcaggggtacttcaatcgcagccaagatgtctttgcaccattgctaatggaggtggttcgtcgttaggagttcaaattaatcaaactcttgcacttgcattacctgctgcatgcaaccttaaaactcctcctgttagtagatgttacgctggtaatggaccggcaatgtctccaatctcaaggggctctccagtgggctcgccagagggttcattttccgacgagactgcggatcctccaatgccagggttcgaagagaactgggagtagcagtacgtagctgagttttcatgtgggagactgggagttctaaagaagtttgttacataaattagcaaatacattttaatgtaatgtcatgttatgatattatatattgtggggtgatttatattagttattacttgtgtactgttttccttcatttctgtaatgtcctagcaatgaactccaaagtttgaatttatttggcactaaaaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="+" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77707" stop="79578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78003" g_stop="78360" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78361" i_stop="78823" i_length="463">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78824" g_stop="78922" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="456" r_length="99" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78923" i_stop="79055" i_length="133">
            <donor d_prob="0.520" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.69"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79056" g_stop="79277" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="684" r_length="228" r_score="0.847"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="+" ref_id="SGN-E573834" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78003" e_stop="78360"/>
          <exon e_start="78824" e_stop="78922"/>
          <exon e_start="79056" e_stop="79277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATAACTATGTCAAAAATGGGATTGAATGTCAAAATTCGCACGACTTTAGTTGCAATATTAGTAATAGGGAATAACTACATGGTTTCAAGAGGAGCAATGGCTCAATCTAACTGCATGAATGCATTTTTAAGCATGTATTCATGTCTTAGCTATGTCACTGGATCAACACCAAGAACACCACCGTCGAGCTCTTGCTGCTCCGCCCTCTCAAGGGTGCTGCAATCGCAGCCAAGGTGTCTTTGCACCGTTGCTAATGGAGGTGGTTCGTCGTTAGGAATTCAAATTAATCAAACTCTTGCACTTGCATTACCTGCTGCATGCAACCTTAAAACTCCTCCTGTTAGTAGATGTTATGATGGTAAGTACCTTGTAATTAATTAACAGGACATTTTGGTGCATTTCTAGTACTAGCTCACTACATCAAAAATGAACTCTAGCGGCAATTAATTAGCAATTGCCGCTGAATGTGTATTTTTAGCTGCAATTAGCACTCTTTGTATAATGTTCGTTAAGACTTTAGCGACATTGAATCTAATGGCACTTAACTAATGCAGGTAAAAACTTTAGCACTCTTTATTAATGTGTCTATTTTTGCCGCTAAAAATTGTTTTTGTTATAGTGGTTTAAGAAAATAAGATTCAAAGTTGTACTGTATTTATTTTCTTAAATTTGATTTCAAATAAAAAATCAGACAAACAAATTAAAAAAGAGTCATTTTCATATACTGATTAGTTATTAGTAGCATTAATTTATCAGATTTTCGTTTATACACTTTTCTCTGATACTAATTTCAAACTTGTGCTAATAATACTTGATAGATGGTAATGAACCGGCAATGTCTCCAATCTCAAGGGTCTCTCTAGTAGGCTCGCCAGAGGGTTCATTTTCGGACGAGACTGCGGATCCTCCAATGCCAGGTAAGTCATGAACAAACACACCACGTATCGTGCCTAGTCAGACTAAGAACACTTAAATTGAATTGAAGACATGGTTTTGTGTTGATTATCGATTATTTATGACATGTTCTATGTTTATGGATGGATTGAGCAGGGCTCGAGGAGAACTGGGAGTAGCAGTACGTTGCTGAGTTCTCA--T------CTAGGAGTTCTAAAGAAGTTTGTTACATAAATTAGC-AATACATTTTAATGTAATGTCATGTTATGATAAT-TATGTTGTGGGGTGATTTATATTAGTAATAATTACTTGTGTACTGTTCTCCTTCATTTCTGTACTGTCCTAGCAATGAACTCCAAAAGTTCGAATTTATTTGGCACT</genome_strand>
        <mrna_strand>ATTA-CATTATGTCAAAAATGGGATGGAACGTCAAAATTTGCATGACTTTAGTTGCAATATTAGTAATAGGGAATAACTACATGATTTCAAGAGGAGCAATGGCTCAATCTAACTGCATGAATGCATTTTTAAGCATGTATTCATGTCTTAGCTATGTCACTGGATCAACTCCAAAAACTCCACCGTCGAGCTCTTGCTGCTCTGCCCTCTCAGGGGTACTTCAATCGCAGCCAAGATGTCTTTGCACCATTGCTAATGGAGGTGGTTCGTCGTTAGGAGTTCAAATTAATCAAACTCTTGCACTTGCATTACCTGCTGCATGCAACCTTAAAACTCCTCCTGTTAGTAGATGTTACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTAATGGACCGGCAATGTCTCCAATCTCAAGGGGCTCTCCAGTGGGCTCGCCAGAGGGTTCATTTTCCGACGAGACTGCGGATCCTCCAATGCCAG.....................................................................................................................................GGTTCGAAGAGAACTGGGAGTAGCAGTACGTAGCTGAGTTTTCATGTGGGAGACTGGGAGTTCTAAAGAAGTTTGTTACATAAATTAGCAAATACATTTTAATGTAATGTCATGTTATGATATTATATATTGTGGGGTGATTTATATTAGT--T-ATTACTTGTGTACTGTTTTCCTTCATTTCTGTAATGTCCTAGCAATGAACTCC-AAAGTTTGAATTTATTTGGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713812" ref_strand="+" ref_description="SGN-E713812 [FB09CH09]">
      <seq>cgaatctttactatcagaatctctttttctttctcctcatttcactgggattgatttttacaaaaagatggctgatcataggtacgaaatgagtcttgccttgattgtgttcgcggtgatctggactggagtaattgctcaagaaagcgatgactgcacaaacgtgtgggtcagcatgtcaccttgcctgaactactacgcggacagcacctcaccacaattctcaggttgctgcacgcagcttagcacggtggttgatgaaaagtcagagtgcttgtgccaggttctcaaagaccttggactcaacattaaccagactcggttatcggccctcactaccgcttgcaaagttcagactccacctgctagcaactgcaacggacgtggatctgcatcacaaggaggtcccaatgatgcaacttcaaccaatatggctgctcctttttcctttttctttctcttgattgcttcttatgcttcaataatcaacatcacctaacagtccattgtattttgactagctagtttgctctgtcatgaaaatgtactattacttttcatagcatttgctcatttcagcagtcagttttccnccgannnnnanaaaaaaaaaaaaaaaaaaaaaaaancccccggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="+" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79511" stop="80791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79809" g_stop="80188" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80189" i_stop="80274" i_length="86">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80275" g_stop="80492" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="598" r_length="218" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="603" polyA_stop="628"/>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="+" ref_id="SGN-E713812" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79809" e_stop="80188"/>
          <exon e_start="80275" e_stop="80492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAACTTTACTATCAGAATCTCTTTTTCTTTCTCCTCATTTCACTGGGATTGATTTTTACAAAAAGATGGCTGATCATAGGTACGAAATGAGTCTTGCCTTGATTGTGTTCGCGGTGATCTGGACTGGAGTAATTGCTCAAGAAAGCGATGACTGCACAAACGTGTGGGTCAGCATGTCACCTTGCCTGAACTACTACGCGGACAGCACCTCACCACAATTCTCAGGTTGCTGCACGCAGCTTAGCACGGTGGTTGATGAAAAGTCAGAGTGCTTGTGCCAGGTTCTCAAAGACCTTGGACTCAACATTAACCAGACTCGGTTATCGGCCCTCACTACCGCTTGCAAAGTTCAGACTCCACCTGCTAGCAACTGCAACGGTAAGAGAATATTCACTCTAAAATCTCCACATAAAAAGCTTGTTAACAGGAAGTGATTTAGTATATAATGGCTTCAACTGTGACAGGACGTGGATCTGCATCACAAGGAGGTCCCAATGATGCAACTTCAACCAATATGGCTGCTCCTTTTTCCTTTTTCTTTCTCTTGATTGCTTCTTATGCTTCAATAATCAACATCACCTAACAGTCCATTGTATTTTGACTAGCTAGTTTGCTCTGTCATGAAAATGTACTATTACTTTTCATAGCATTTGCTCATTTCAGCAGTCAGTTTTCCACCGAA</genome_strand>
        <mrna_strand>CGAATCTTTACTATCAGAATCTCTTTTTCTTTCTCCTCATTTCACTGGGATTGATTTTTACAAAAAGATGGCTGATCATAGGTACGAAATGAGTCTTGCCTTGATTGTGTTCGCGGTGATCTGGACTGGAGTAATTGCTCAAGAAAGCGATGACTGCACAAACGTGTGGGTCAGCATGTCACCTTGCCTGAACTACTACGCGGACAGCACCTCACCACAATTCTCAGGTTGCTGCACGCAGCTTAGCACGGTGGTTGATGAAAAGTCAGAGTGCTTGTGCCAGGTTCTCAAAGACCTTGGACTCAACATTAACCAGACTCGGTTATCGGCCCTCACTACCGCTTGCAAAGTTCAGACTCCACCTGCTAGCAACTGCAACG......................................................................................GACGTGGATCTGCATCACAAGGAGGTCCCAATGATGCAACTTCAACCAATATGGCTGCTCCTTTTTCCTTTTTCTTTCTCTTGATTGCTTCTTATGCTTCAATAATCAACATCACCTAACAGTCCATTGTATTTTGACTAGCTAGTTTGCTCTGTCATGAAAATGTACTATTACTTTTCATAGCATTTGCTCATTTCAGCAGTCAGTTTTCCNCCGAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273007" ref_strand="+" ref_description="SGN-E273007 [cLEM-25-F17]">
      <seq>ttactatcagaatctctttttctttctcctcatttcactgggattgatttttacaaaaagatggctgatcataggtacgaaatgagtcttgccttgattgtgttcgcggtgatctggactggagtaattgctcaagaaagcgatgactgcacaaacgtgtgggtcagcatgtcaccttgcctgaactactacgcggacagcacctcaccacaattctcaggttgctgcacgcagcttagcacggtggttgatgaaaagtcagagtgcttgtgccaggttctcaaagaccttggactcaacattaaccagactcggttatcggccctcactaccgcttgcaaagttcagactccacctgctagcaactgcaacggacgtggatctgcatcacaaggaggtcccaatgatgcaacttcaaccaatatggctgctcctttttcctttttctttctcttgattgcttcttatgcttcaataatcaacatcacctaacagtccattgtattttgactagctagtttgctctgtcatgaaaatgtactattacttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="+" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79516" stop="80753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79816" g_stop="80188" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80189" i_stop="80274" i_length="86">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80275" g_stop="80453" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="552" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="+" ref_id="SGN-E273007" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79816" e_stop="80188"/>
          <exon e_start="80275" e_stop="80453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTATCAGAATCTCTTTTTCTTTCTCCTCATTTCACTGGGATTGATTTTTACAAAAAGATGGCTGATCATAGGTACGAAATGAGTCTTGCCTTGATTGTGTTCGCGGTGATCTGGACTGGAGTAATTGCTCAAGAAAGCGATGACTGCACAAACGTGTGGGTCAGCATGTCACCTTGCCTGAACTACTACGCGGACAGCACCTCACCACAATTCTCAGGTTGCTGCACGCAGCTTAGCACGGTGGTTGATGAAAAGTCAGAGTGCTTGTGCCAGGTTCTCAAAGACCTTGGACTCAACATTAACCAGACTCGGTTATCGGCCCTCACTACCGCTTGCAAAGTTCAGACTCCACCTGCTAGCAACTGCAACGGTAAGAGAATATTCACTCTAAAATCTCCACATAAAAAGCTTGTTAACAGGAAGTGATTTAGTATATAATGGCTTCAACTGTGACAGGACGTGGATCTGCATCACAAGGAGGTCCCAATGATGCAACTTCAACCAATATGGCTGCTCCTTTTTCCTTTTTCTTTCTCTTGATTGCTTCTTATGCTTCAATAATCAACATCACCTAACAGTCCATTGTATTTTGACTAGCTAGTTTGCTCTGTCATGAAAATGTACTATTACTTTTC</genome_strand>
        <mrna_strand>TTACTATCAGAATCTCTTTTTCTTTCTCCTCATTTCACTGGGATTGATTTTTACAAAAAGATGGCTGATCATAGGTACGAAATGAGTCTTGCCTTGATTGTGTTCGCGGTGATCTGGACTGGAGTAATTGCTCAAGAAAGCGATGACTGCACAAACGTGTGGGTCAGCATGTCACCTTGCCTGAACTACTACGCGGACAGCACCTCACCACAATTCTCAGGTTGCTGCACGCAGCTTAGCACGGTGGTTGATGAAAAGTCAGAGTGCTTGTGCCAGGTTCTCAAAGACCTTGGACTCAACATTAACCAGACTCGGTTATCGGCCCTCACTACCGCTTGCAAAGTTCAGACTCCACCTGCTAGCAACTGCAACG......................................................................................GACGTGGATCTGCATCACAAGGAGGTCCCAATGATGCAACTTCAACCAATATGGCTGCTCCTTTTTCCTTTTTCTTTCTCTTGATTGCTTCTTATGCTTCAATAATCAACATCACCTAACAGTCCATTGTATTTTGACTAGCTAGTTTGCTCTGTCATGAAAATGTACTATTACTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305588" ref_strand="+" ref_description="SGN-E305588 [cLEX-14-E18]">
      <seq>aatctctttttctttctcctcatttcactgggattgatttttacaaaaagatggctgatcataggtacgaaatgagtcttgccttgattgtgttcgcggtgatctggactggagtaattgctcaagaaagcgatgactgcacaaacgtgtgggtcagcatgtcaccttgcctgaactactacgcggacagcacctcaccacaattctcaggttgctgcacgcagcttagcacggtggttgatgaaaagtcagagtgcttgtgccaggttctcaaagaccttggactcaacattaaccagactcggttatcggccctcactaccgcttgcaaagttcagactccacctgctagcaactgcaacggacgtggatctgcatcacaaggaggtcccaatgatgcaacttcaaccaatatggctgctcctttttcctttttctttctcttgattgcttcttatgcttcaataatcaacatcacctaacagtccattgtattttgactagctagtttgctctgtcatgaaaatgtactattacttttcatagcatttgctcatttcagcagtcagttttccaccgaagcctgattggccattgtatcgtacttcgtcaatcactattgctagtttgctctgcattcacattcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="+" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79526" stop="80858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79826" g_stop="80188" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80189" i_stop="80274" i_length="86">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80275" g_stop="80570" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="659" r_length="296" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="+" ref_id="SGN-E305588" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79826" e_stop="80188"/>
          <exon e_start="80275" e_stop="80570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTCTTTTTCTTTCTCCTCATTTCACTGGGATTGATTTTTACAAAAAGATGGCTGATCATAGGTACGAAATGAGTCTTGCCTTGATTGTGTTCGCGGTGATCTGGACTGGAGTAATTGCTCAAGAAAGCGATGACTGCACAAACGTGTGGGTCAGCATGTCACCTTGCCTGAACTACTACGCGGACAGCACCTCACCACAATTCTCAGGTTGCTGCACGCAGCTTAGCACGGTGGTTGATGAAAAGTCAGAGTGCTTGTGCCAGGTTCTCAAAGACCTTGGACTCAACATTAACCAGACTCGGTTATCGGCCCTCACTACCGCTTGCAAAGTTCAGACTCCACCTGCTAGCAACTGCAACGGTAAGAGAATATTCACTCTAAAATCTCCACATAAAAAGCTTGTTAACAGGAAGTGATTTAGTATATAATGGCTTCAACTGTGACAGGACGTGGATCTGCATCACAAGGAGGTCCCAATGATGCAACTTCAACCAATATGGCTGCTCCTTTTTCCTTTTTCTTTCTCTTGATTGCTTCTTATGCTTCAATAATCAACATCACCTAACAGTCCATTGTATTTTGACTAGCTAGTTTGCTCTGTCATGAAAATGTACTATTACTTTTCATAGCATTTGCTCATTTCAGCAGTCAGTTTTCCACCGAAGCCTGATTGGCCATTGTATCGTACTTCGTCAATCACTATTGCTAGTTTGCTCTGCATTCACATTCATGTTGTAAATTA</genome_strand>
        <mrna_strand>AATCTCTTTTTCTTTCTCCTCATTTCACTGGGATTGATTTTTACAAAAAGATGGCTGATCATAGGTACGAAATGAGTCTTGCCTTGATTGTGTTCGCGGTGATCTGGACTGGAGTAATTGCTCAAGAAAGCGATGACTGCACAAACGTGTGGGTCAGCATGTCACCTTGCCTGAACTACTACGCGGACAGCACCTCACCACAATTCTCAGGTTGCTGCACGCAGCTTAGCACGGTGGTTGATGAAAAGTCAGAGTGCTTGTGCCAGGTTCTCAAAGACCTTGGACTCAACATTAACCAGACTCGGTTATCGGCCCTCACTACCGCTTGCAAAGTTCAGACTCCACCTGCTAGCAACTGCAACG......................................................................................GACGTGGATCTGCATCACAAGGAGGTCCCAATGATGCAACTTCAACCAATATGGCTGCTCCTTTTTCCTTTTTCTTTCTCTTGATTGCTTCTTATGCTTCAATAATCAACATCACCTAACAGTCCATTGTATTTTGACTAGCTAGTTTGCTCTGTCATGAAAATGTACTATTACTTTTCATAGCATTTGCTCATTTCAGCAGTCAGTTTTCCACCGAAGCCTGATTGGCCATTGTATCGTACTTCGTCAATCACTATTGCTAGTTTGCTCTGCATTCACATTCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556416" ref_strand="+" ref_description="SGN-E556416 [cTSD-3-G24]">
      <seq>ctctttttctttctcctcatttcactgggattgatttttacaaaaagatggctgatcataggtacgaaatgagtcttgccttgattgtgttcgcggtgatctggactggagtaattgctcaagaaagcgatgactgcacaaacgtgtgggtcagcatgtcaccttgcctgaactactacgcggacagcacctcaccacaattctcaggttgctgcacgcagcttagcacggtggttgatgaaaagtcagagtgcttgtgccaggttctcaaagaccttggactcaacattaaccagactcggttatcggccctcactaccgcttgcaaagttcagactccacctgctagcaactgcaacggacgtggatctgcatcacaaggaggtcccaatgatgcaacttcaaccaatatggctgctcctttttcctttttctttctcttgattgcttcttatgcttcaataatcaacatcacctaacagtccattgtattttgactagctagtttgctctgtcatgaaaatgtactattacttttcataanaaaaaaaaaaaaaaaaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="+" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79529" stop="80756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79829" g_stop="80188" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80189" i_stop="80274" i_length="86">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80275" g_stop="80456" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="542" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="562"/>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="+" ref_id="SGN-E556416" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79829" e_stop="80188"/>
          <exon e_start="80275" e_stop="80456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTTCTTTCTCCTCATTTCACTGGGATTGATTTTTACAAAAAGATGGCTGATCATAGGTACGAAATGAGTCTTGCCTTGATTGTGTTCGCGGTGATCTGGACTGGAGTAATTGCTCAAGAAAGCGATGACTGCACAAACGTGTGGGTCAGCATGTCACCTTGCCTGAACTACTACGCGGACAGCACCTCACCACAATTCTCAGGTTGCTGCACGCAGCTTAGCACGGTGGTTGATGAAAAGTCAGAGTGCTTGTGCCAGGTTCTCAAAGACCTTGGACTCAACATTAACCAGACTCGGTTATCGGCCCTCACTACCGCTTGCAAAGTTCAGACTCCACCTGCTAGCAACTGCAACGGTAAGAGAATATTCACTCTAAAATCTCCACATAAAAAGCTTGTTAACAGGAAGTGATTTAGTATATAATGGCTTCAACTGTGACAGGACGTGGATCTGCATCACAAGGAGGTCCCAATGATGCAACTTCAACCAATATGGCTGCTCCTTTTTCCTTTTTCTTTCTCTTGATTGCTTCTTATGCTTCAATAATCAACATCACCTAACAGTCCATTGTATTTTGACTAGCTAGTTTGCTCTGTCATGAAAATGTACTATTACTTTTCATA</genome_strand>
        <mrna_strand>CTCTTTTTCTTTCTCCTCATTTCACTGGGATTGATTTTTACAAAAAGATGGCTGATCATAGGTACGAAATGAGTCTTGCCTTGATTGTGTTCGCGGTGATCTGGACTGGAGTAATTGCTCAAGAAAGCGATGACTGCACAAACGTGTGGGTCAGCATGTCACCTTGCCTGAACTACTACGCGGACAGCACCTCACCACAATTCTCAGGTTGCTGCACGCAGCTTAGCACGGTGGTTGATGAAAAGTCAGAGTGCTTGTGCCAGGTTCTCAAAGACCTTGGACTCAACATTAACCAGACTCGGTTATCGGCCCTCACTACCGCTTGCAAAGTTCAGACTCCACCTGCTAGCAACTGCAACG......................................................................................GACGTGGATCTGCATCACAAGGAGGTCCCAATGATGCAACTTCAACCAATATGGCTGCTCCTTTTTCCTTTTTCTTTCTCTTGATTGCTTCTTATGCTTCAATAATCAACATCACCTAACAGTCCATTGTATTTTGACTAGCTAGTTTGCTCTGTCATGAAAATGTACTATTACTTTTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335474" ref_strand="+" ref_description="SGN-E335474 [cTOE-2-G15]">
      <seq>actgggattgattattacaaaaagatggctgatcataggtacgaaatgagtcttgccttgattgtgttcgcggtgatctggactggaataattgctcaagaaagcgatgactgcacaaacgtgtgggtcagcatgtcaccttgcctgaactactacgcggacagcacctcaccacaattctcaggttgctgcacgcagcttagcacggtggttgatgaaaagtcagagtgcttgtgccaggttctcaaagaccttggactcaacattaaccagactcggttatcggccctcactaccgcttgcaaagttcagactccacctgctagcaactgcaacggacgtggatctgcatcacaaggaggtcccaatgatgcaacttcaaccaatatggctgctcctttttcctttttctttctcttgattgcttcttatgcttcaataatcaacatcacctaacagtccattgtattttgactagctagtttgctctgtcatgaaaatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="+" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79552" stop="80741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79852" g_stop="80188" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80189" i_stop="80274" i_length="86">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80275" g_stop="80450" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="513" r_length="176" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="+" ref_id="SGN-E335474" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79852" e_stop="80188"/>
          <exon e_start="80275" e_stop="80450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGGATTGATTTTTACAAAAAGATGGCTGATCATAGGTACGAAATGAGTCTTGCCTTGATTGTGTTCGCGGTGATCTGGACTGGAGTAATTGCTCAAGAAAGCGATGACTGCACAAACGTGTGGGTCAGCATGTCACCTTGCCTGAACTACTACGCGGACAGCACCTCACCACAATTCTCAGGTTGCTGCACGCAGCTTAGCACGGTGGTTGATGAAAAGTCAGAGTGCTTGTGCCAGGTTCTCAAAGACCTTGGACTCAACATTAACCAGACTCGGTTATCGGCCCTCACTACCGCTTGCAAAGTTCAGACTCCACCTGCTAGCAACTGCAACGGTAAGAGAATATTCACTCTAAAATCTCCACATAAAAAGCTTGTTAACAGGAAGTGATTTAGTATATAATGGCTTCAACTGTGACAGGACGTGGATCTGCATCACAAGGAGGTCCCAATGATGCAACTTCAACCAATATGGCTGCTCCTTTTTCCTTTTTCTTTCTCTTGATTGCTTCTTATGCTTCAATAATCAACATCACCTAACAGTCCATTGTATTTTGACTAGCTAGTTTGCTCTGTCATGAAAATGTACTATTACTT</genome_strand>
        <mrna_strand>ACTGGGATTGATTATTACAAAAAGATGGCTGATCATAGGTACGAAATGAGTCTTGCCTTGATTGTGTTCGCGGTGATCTGGACTGGAATAATTGCTCAAGAAAGCGATGACTGCACAAACGTGTGGGTCAGCATGTCACCTTGCCTGAACTACTACGCGGACAGCACCTCACCACAATTCTCAGGTTGCTGCACGCAGCTTAGCACGGTGGTTGATGAAAAGTCAGAGTGCTTGTGCCAGGTTCTCAAAGACCTTGGACTCAACATTAACCAGACTCGGTTATCGGCCCTCACTACCGCTTGCAAAGTTCAGACTCCACCTGCTAGCAACTGCAACG......................................................................................GACGTGGATCTGCATCACAAGGAGGTCCCAATGATGCAACTTCAACCAATATGGCTGCTCCTTTTTCCTTTTTCTTTCTCTTGATTGCTTCTTATGCTTCAATAATCAACATCACCTAACAGTCCATTGTATTTTGACTAGCTAGTTTGCTCTGTCATGAAAATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746838" ref_strand="+" ref_description="SGN-E746838 [GI|47104444]">
      <seq>atttcagtgacaattttcaatccctaatcgatcttccatggaccccctcacactcctccgtgagtacaccatacgcaacgacctccacaagattgttcgcatcggcgacgactaccgattcggcaatgactacactttcccttgcacaatcgaaaccgcttatcgctccaaacatgttcaagctaatcggtacactctcgaaaccctaatcaacttcatcaccaatcaccaccttaaacacactgaatacattcagcaatctcgttctcttcgtattccggcggttaccctacctgaccgtaaaccccttctcgattatctcaccggaaagactgcatcttcagattctattgaattcctcaaattccctcagtcgaatgatacttcagttcctgtttctgtttcagctggtgttacgggcaatgaggagaatgtgatgagtgatgttagggttttggaaaatcaaaaccctattgagctgattaaagctgctgagaagcctttgaaggatagagaggcgattttgttttgtaagaaccgggatttctatagtgtttttacggctgcgttgcgtagagatgaggagcggcaccgggcggaatccttgcagagaaaagatgggttggttgctaagaatcggatagatagggggtatggaggtggtgatgaaataggatatgatggagggcccaaggcgaaaatgcatttgaaggggagtaagataggggagggtgttcccattattttggttcccagtgccttttcgactttgatcaccatctataatgtgaaggactttttggaggatggggtgtttataccaactgatgtgaaactgaagcagatgaaggggtcaaaaccggactgtataacagtacaaaagaagtttagtagggatagggtagttacagcatatgaggttagagataagccttctgccttgaagccggaagattgggaccgtgtggtggcagtttttgtgttggggaaagactggcagttcaaagattggccttttaaggatcatgttgagacctttaacagggttgtaggattttttttgcgttttgaggatgacagtgtggagtcagcgaagaccgtgaagcaatggaatgtcaagattatctcgattagtaagaacaaacgccaccaggacagagctgcagcacttgaggtgtgggagaaacttgaagaatttatgcggtcacggtctcattgattcatgctgagtctctaggtagacaacttgctacaagttgtatttccctttgtgaccgtctttttggttgtaacaattattaccctgatttctcatacttgagaatctctttttttcttaataaagtaaatatcttctctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85413" stop="28242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85113" g_stop="84068" g_length="1046"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1046" r_length="1046" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84067" i_stop="83880" i_length="188">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83879" g_stop="83797" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1047" r_stop="1129" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83796" i_stop="83663" i_length="134">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83662" g_stop="83418" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1130" r_stop="1374" r_length="245" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E746838" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85113" e_stop="84068"/>
          <exon e_start="83879" e_stop="83797"/>
          <exon e_start="83662" e_stop="83418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAGTGACAATTTTCAATCCCTAATCGATCTTCCATGGACCCCCTCACACTCCTCCGTGAGTACACCATACGCAACGACCTCCACAAGATTGTTCGCATCGGCGACGACTACCGATTCGGCAATGACTACACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTTAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATTGAATTCCTCAAATTCCCTCAGTCGAATGATACTTCAGTTCCTGTTTCTGTTTCAGCTGGTGTTACGGGCAATGAGGAGAATGTGATGAGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGCTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAGGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCGTAGAGATGAGGAGCGGCACCGGGCGGAATCCTTGCAGAGAAAAGATGGGTTGGTTGCTAAGAATCGGATAGATAGGGGGTATGGAGGTGGTGATGAAATAGGATATGATGGAGGGCCCAAGGCGAAAATGCATTTGAAGGGGAGTAAGATAGGGGAGGGTGTTCCCATTATTTTGGTTCCCAGTGCCTTTTCGACTTTGATCACCATCTATAATGTGAAGGACTTTTTGGAGGATGGGGTGTTTATACCAACTGATGTGAAACTGAAGCAGATGAAGGGGTCAAAACCGGACTGTATAACAGTACAAAAGAAGTTTAGTAGGGATAGGGTAGTTACAGCATATGAGGTTAGAGATAAGCCTTCTGCCTTGAAGCCGGAAGATTGGGACCGTGTGGTGGCAGTTTTTGTGTTGGGGAAAGACTGGCAGTTCAAAGATTGGCCTTTTAAGGATCATGTTGAGACCTTTAACAGGGGTAAGTTCTGAATGATTATGTGCAGCTGGATTTTGTCATATTGTTTGTCAAATGATGATAGCCTCTTGTAATACTAGTTACTAAAAGGATTGGAGTAATCTTGTTCGTTCTTAGCTAGAAAAAGTAGTGATCTTTTGGGTCAATTTTCACTTGGAACCTGAAATTAGATTTTCTCATTTTTGCTGCAGTTGTAGGATTTTTTTTGCGTTTTGAGGATGACAGTGTGGAGTCAGCGAAGACCGTGAAGCAATGGAATGTCAAGATTATCTCGGTAACGATTGTGGATTTAGCTCTCATCTTTAAAATCTGTAAAACTACAATTTTTGTGCAGATCACGACAATTTGCTTTTAATTCTATATGATTATTATGTCTTATCAATTGTATTTTGCTAATGGGATCTGCAGATTAGTAAGAACAAACGCCACCAGGACAGAGCTGCAGCACTTGAGGTGTGGGAGAAACTTGAAGAATTTATGCGGTCACGGTCTCATTGATTCATGCTGAGTCTCTAGGTAGACAACTTGCTACAAGTTGTATTTCCCTTTGTGACCGTCTTTTTGGTTGTAACAATTATTACCCTGATTTCTCATACTTGAGAATCTCTTTTTTTCTTAATAAAGTAAATATCTTCTCTAAATAGCATCTAAAG</genome_strand>
        <mrna_strand>ATTTCAGTGACAATTTTCAATCCCTAATCGATCTTCCATGGACCCCCTCACACTCCTCCGTGAGTACACCATACGCAACGACCTCCACAAGATTGTTCGCATCGGCGACGACTACCGATTCGGCAATGACTACACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTTAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATTGAATTCCTCAAATTCCCTCAGTCGAATGATACTTCAGTTCCTGTTTCTGTTTCAGCTGGTGTTACGGGCAATGAGGAGAATGTGATGAGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGCTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAGGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCGTAGAGATGAGGAGCGGCACCGGGCGGAATCCTTGCAGAGAAAAGATGGGTTGGTTGCTAAGAATCGGATAGATAGGGGGTATGGAGGTGGTGATGAAATAGGATATGATGGAGGGCCCAAGGCGAAAATGCATTTGAAGGGGAGTAAGATAGGGGAGGGTGTTCCCATTATTTTGGTTCCCAGTGCCTTTTCGACTTTGATCACCATCTATAATGTGAAGGACTTTTTGGAGGATGGGGTGTTTATACCAACTGATGTGAAACTGAAGCAGATGAAGGGGTCAAAACCGGACTGTATAACAGTACAAAAGAAGTTTAGTAGGGATAGGGTAGTTACAGCATATGAGGTTAGAGATAAGCCTTCTGCCTTGAAGCCGGAAGATTGGGACCGTGTGGTGGCAGTTTTTGTGTTGGGGAAAGACTGGCAGTTCAAAGATTGGCCTTTTAAGGATCATGTTGAGACCTTTAACAGGG............................................................................................................................................................................................TTGTAGGATTTTTTTTGCGTTTTGAGGATGACAGTGTGGAGTCAGCGAAGACCGTGAAGCAATGGAATGTCAAGATTATCTCG......................................................................................................................................ATTAGTAAGAACAAACGCCACCAGGACAGAGCTGCAGCACTTGAGGTGTGGGAGAAACTTGAAGAATTTATGCGGTCACGGTCTCATTGATTCATGCTGAGTCTCTAGGTAGACAACTTGCTACAAGTTGTATTTCCCTTTGTGACCGTCTTTTTGGTTGTAACAATTATTACCCTGATTTCTCATACTTGAGAATCTCTTTTTTTCTTAATAAAGTAAATATCTTCTCTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418036" ref_strand="-" ref_description="SGN-E418036 [STM-26-D12]">
      <seq>ggaaagatgggttggttgcaaagaatcggatagatagggggtatggaggtggtgatgaaataggatatgatgaggggcccaaggcgaaaatgcatttgaaggggagtaagataggggagggtgttcccattattttggttcccagtgcgttttcgactttgatcaccatctataatgtgaaggactttttggaggatggggtgtttatacctactgatgtgaaactgaagcagatgaaggggtcaaaaccggattgtataacagtacaaaagaagtttagtagggatagggtagttacagcatatgaggttagagataagccttctgccttgaagccggaagattgggaccgtgtggtggcagtttttgtgttggggaaagactggcagttcaaagattggccttttaaggatcatgttgagacctttaacagggttgtaggatttttcttgcgttttgaggatgatagtgtggagtcagcgaagaccgtgaagcaatggaatgtcaagattatctcgataagtaagaacaaacgacaccaggacagagctgcagcacttgaggtgtgggagaaacttgaagaatttatgcggtctcggtctcattgatgcatgctgagtctctaggtagacaacttgctataagttgtatttccctttgtgaccgtcttttcggttgtaacaatgatgaacctaatttctcatacttgagaaacttttttttctgagacaagtaaatatcttctctccaaaaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84802" stop="83124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84502" g_stop="84068" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84067" i_stop="83880" i_length="188">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83879" g_stop="83797" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="518" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83796" i_stop="83663" i_length="134">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83662" g_stop="83422" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="758" r_length="240" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E418036" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418036" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="84502" e_stop="84068"/>
          <exon e_start="83879" e_stop="83797"/>
          <exon e_start="83662" e_stop="83422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGATGGGTTGGTTGCTAAGAATCGGATAGATAGGGGGTATGGAGGTGGTGATGAAATAGGATATGATGGAGGGCCCAAGGCGAAAATGCATTTGAAGGGGAGTAAGATAGGGGAGGGTGTTCCCATTATTTTGGTTCCCAGTGCCTTTTCGACTTTGATCACCATCTATAATGTGAAGGACTTTTTGGAGGATGGGGTGTTTATACCAACTGATGTGAAACTGAAGCAGATGAAGGGGTCAAAACCGGACTGTATAACAGTACAAAAGAAGTTTAGTAGGGATAGGGTAGTTACAGCATATGAGGTTAGAGATAAGCCTTCTGCCTTGAAGCCGGAAGATTGGGACCGTGTGGTGGCAGTTTTTGTGTTGGGGAAAGACTGGCAGTTCAAAGATTGGCCTTTTAAGGATCATGTTGAGACCTTTAACAGGGGTAAGTTCTGAATGATTATGTGCAGCTGGATTTTGTCATATTGTTTGTCAAATGATGATAGCCTCTTGTAATACTAGTTACTAAAAGGATTGGAGTAATCTTGTTCGTTCTTAGCTAGAAAAAGTAGTGATCTTTTGGGTCAATTTTCACTTGGAACCTGAAATTAGATTTTCTCATTTTTGCTGCAGTTGTAGGATTTTTTTTGCGTTTTGAGGATGACAGTGTGGAGTCAGCGAAGACCGTGAAGCAATGGAATGTCAAGATTATCTCGGTAACGATTGTGGATTTAGCTCTCATCTTTAAAATCTGTAAAACTACAATTTTTGTGCAGATCACGACAATTTGCTTTTAATTCTATATGATTATTATGTCTTATCAATTGTATTTTGCTAATGGGATCTGCAGATTAGTAAGAACAAACGCCACCAGGACAGAGCTGCAGCACTTGAGGTGTGGGAGAAACTTGAAGAATTTATGCGGTCACGGTCTCATTGATTCATGCTGAGTCTCTAGGTAGACAACTTGCTACAAGTTGTATTTCCCTTTGTGACCGTCTTTTTGGTTGTAACAATTATTACCCTGATTTCTCATACTTGAGAATCTCTTTTTTTCTTAATAAAGTAAATATCTTCTCTAAATAGCATCT</genome_strand>
        <mrna_strand>GGAAAGATGGGTTGGTTGCAAAGAATCGGATAGATAGGGGGTATGGAGGTGGTGATGAAATAGGATATGATGAGGGGCCCAAGGCGAAAATGCATTTGAAGGGGAGTAAGATAGGGGAGGGTGTTCCCATTATTTTGGTTCCCAGTGCGTTTTCGACTTTGATCACCATCTATAATGTGAAGGACTTTTTGGAGGATGGGGTGTTTATACCTACTGATGTGAAACTGAAGCAGATGAAGGGGTCAAAACCGGATTGTATAACAGTACAAAAGAAGTTTAGTAGGGATAGGGTAGTTACAGCATATGAGGTTAGAGATAAGCCTTCTGCCTTGAAGCCGGAAGATTGGGACCGTGTGGTGGCAGTTTTTGTGTTGGGGAAAGACTGGCAGTTCAAAGATTGGCCTTTTAAGGATCATGTTGAGACCTTTAACAGGG............................................................................................................................................................................................TTGTAGGATTTTTCTTGCGTTTTGAGGATGATAGTGTGGAGTCAGCGAAGACCGTGAAGCAATGGAATGTCAAGATTATCTCG......................................................................................................................................ATAAGTAAGAACAAACGACACCAGGACAGAGCTGCAGCACTTGAGGTGTGGGAGAAACTTGAAGAATTTATGCGGTCTCGGTCTCATTGATGCATGCTGAGTCTCTAGGTAGACAACTTGCTATAAGTTGTATTTCCCTTTGTGACCGTCTTTTCGGTTGTAACAATGATGAACCTAATTTCTCATACTTGAGAAACT-TTTTTTTCTGAGACAAGTAAATATCTTCTCTCCAAAAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391970" ref_strand="+" ref_description="SGN-E391970 [TUS-27-P2](-)">
      <seq>cccaaggcgaaaatgcatttgaaggggagtaagataggggagggtgttcccattattttggttcccagtgccttttcgactttgatcaccatctataatgtgaaggactttttggaggatggggtgtttataccaactgatgtgaaactgaagcagatgaaggggtcaaaaccggactgtataacagtacaaaagaagtttagtagggatagggtagttacagcatatgaggttagagataagccttctgccttgaagccggaagattgggaccgtgtggtggcagtttttgtgttggggaaagactggcagttcaaagattggccttttaaggatcatgttgagacctttaacagggttgtaggattttttttgcgttttgaggatgacagtgtggagtcagcgaagaccgtgaagcaatggaatgtcaagattatctcgattagtaagaacaaacgccaccaggacagagctgcagcacttgaggtgtgggagaaacttgaagaatttatgcggtcacggtctcattgattcatgctgagtctctaggtagacaacttgctacaagttgtatttccctttgtgaccgtctttttggttgtaacaattattaccctgatttctcatacttgagaatctctttttttcttaataaagtaaatatcttctctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84725" stop="83128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84425" g_stop="84068" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84067" i_stop="83880" i_length="188">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83879" g_stop="83797" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="441" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83796" i_stop="83663" i_length="134">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83662" g_stop="83422" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="682" r_length="241" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E391970" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84425" e_stop="84068"/>
          <exon e_start="83879" e_stop="83797"/>
          <exon e_start="83662" e_stop="83422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGGCGAAAATGCATTTGAAGGGGAGTAAGATAGGGGAGGGTGTTCCCATTATTTTGGTTCCCAGTGCCTTTTCGACTTTGATCACCATCTATAATGTGAAGGACTTTTTGGAGGATGGGGTGTTTATACCAACTGATGTGAAACTGAAGCAGATGAAGGGGTCAAAACCGGACTGTATAACAGTACAAAAGAAGTTTAGTAGGGATAGGGTAGTTACAGCATATGAGGTTAGAGATAAGCCTTCTGCCTTGAAGCCGGAAGATTGGGACCGTGTGGTGGCAGTTTTTGTGTTGGGGAAAGACTGGCAGTTCAAAGATTGGCCTTTTAAGGATCATGTTGAGACCTTTAACAGGGGTAAGTTCTGAATGATTATGTGCAGCTGGATTTTGTCATATTGTTTGTCAAATGATGATAGCCTCTTGTAATACTAGTTACTAAAAGGATTGGAGTAATCTTGTTCGTTCTTAGCTAGAAAAAGTAGTGATCTTTTGGGTCAATTTTCACTTGGAACCTGAAATTAGATTTTCTCATTTTTGCTGCAGTTGTAGGATTTTTTTTGCGTTTTGAGGATGACAGTGTGGAGTCAGCGAAGACCGTGAAGCAATGGAATGTCAAGATTATCTCGGTAACGATTGTGGATTTAGCTCTCATCTTTAAAATCTGTAAAACTACAATTTTTGTGCAGATCACGACAATTTGCTTTTAATTCTATATGATTATTATGTCTTATCAATTGTATTTTGCTAATGGGATCTGCAGATTAGTAAGAACAAACGCCACCAGGACAGAGCTGCAGCACTTGAGGTGTGGGAGAAACTTGAAGAATTTATGCGGTCACGGTCTCATTGATTCATGCTGAGTCTCTAGGTAGACAACTTGCTACAAGTTGTATTTCCCTTTGTGACCGTCTTTTTGGTTGTAACAATTATTACCCTGATTTCTCATACTTGAGAATCTCTTTTTTTCTTAATAAAGTAAATATCTTCTCTAAATAGCATCT</genome_strand>
        <mrna_strand>CCCAAGGCGAAAATGCATTTGAAGGGGAGTAAGATAGGGGAGGGTGTTCCCATTATTTTGGTTCCCAGTGCCTTTTCGACTTTGATCACCATCTATAATGTGAAGGACTTTTTGGAGGATGGGGTGTTTATACCAACTGATGTGAAACTGAAGCAGATGAAGGGGTCAAAACCGGACTGTATAACAGTACAAAAGAAGTTTAGTAGGGATAGGGTAGTTACAGCATATGAGGTTAGAGATAAGCCTTCTGCCTTGAAGCCGGAAGATTGGGACCGTGTGGTGGCAGTTTTTGTGTTGGGGAAAGACTGGCAGTTCAAAGATTGGCCTTTTAAGGATCATGTTGAGACCTTTAACAGGG............................................................................................................................................................................................TTGTAGGATTTTTTTTGCGTTTTGAGGATGACAGTGTGGAGTCAGCGAAGACCGTGAAGCAATGGAATGTCAAGATTATCTCG......................................................................................................................................ATTAGTAAGAACAAACGCCACCAGGACAGAGCTGCAGCACTTGAGGTGTGGGAGAAACTTGAAGAATTTATGCGGTCACGGTCTCATTGATTCATGCTGAGTCTCTAGGTAGACAACTTGCTACAAGTTGTATTTCCCTTTGTGACCGTCTTTTTGGTTGTAACAATTATTACCCTGATTTCTCATACTTGAGAATCTCTTTTTTTCTTAATAAAGTAAATATCTTCTCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373944" ref_strand="+" ref_description="SGN-E373944 [TUS-33-G9](-)">
      <seq>aaagatgggttgggtgctaagaatcggatagatagggggtatggaggtggtgatgaaataggatatgatggagggcccaaggcgaaaatgcatttgaaggggagtaagataggggagggtgttcccattattttggttcccagtgccttttcgactttgatcaccatctataatgtgaaggactttttggaggatggggtgtttataccaactgatgtgaaactgaagcagatgaaggggtcaaaaccggactgtataacagtacaaaagaagtttagtagggatagggtagttacagcatatgaggttagagataagccttctgccttgaagccggaagattgggaccgtgtggtggcagtttttgtgttggggaaagactggcagttcaaagattggccttttaaggatcatgttgagacctttaacagggttgtaggattttttttgcgttttgaggatgacagtgtggagtcagcgaagaccgtgaagcaatggaatgtcaagattatctcgattagtaagaacaaacgccaccaggacagagctgcagcacttgaggtgtgggagaaacttgaagaatttatgcggtcacggtctcattgattcatgctgagtctctaggtagacaacttgctacaagttgtatttccctttgtgaccgtctttttggttgtaacaattattaccctgatttctcatacttgagaatctctttttttcttaataaagtaaatatcttctctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84800" stop="83128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84500" g_stop="84068" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84067" i_stop="83880" i_length="188">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83879" g_stop="83797" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="516" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83796" i_stop="83663" i_length="134">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83662" g_stop="83424" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="755" r_length="239" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E373944" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84500" e_stop="84068"/>
          <exon e_start="83879" e_stop="83797"/>
          <exon e_start="83662" e_stop="83424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATGGGTTGGTTGCTAAGAATCGGATAGATAGGGGGTATGGAGGTGGTGATGAAATAGGATATGATGGAGGGCCCAAGGCGAAAATGCATTTGAAGGGGAGTAAGATAGGGGAGGGTGTTCCCATTATTTTGGTTCCCAGTGCCTTTTCGACTTTGATCACCATCTATAATGTGAAGGACTTTTTGGAGGATGGGGTGTTTATACCAACTGATGTGAAACTGAAGCAGATGAAGGGGTCAAAACCGGACTGTATAACAGTACAAAAGAAGTTTAGTAGGGATAGGGTAGTTACAGCATATGAGGTTAGAGATAAGCCTTCTGCCTTGAAGCCGGAAGATTGGGACCGTGTGGTGGCAGTTTTTGTGTTGGGGAAAGACTGGCAGTTCAAAGATTGGCCTTTTAAGGATCATGTTGAGACCTTTAACAGGGGTAAGTTCTGAATGATTATGTGCAGCTGGATTTTGTCATATTGTTTGTCAAATGATGATAGCCTCTTGTAATACTAGTTACTAAAAGGATTGGAGTAATCTTGTTCGTTCTTAGCTAGAAAAAGTAGTGATCTTTTGGGTCAATTTTCACTTGGAACCTGAAATTAGATTTTCTCATTTTTGCTGCAGTTGTAGGATTTTTTTTGCGTTTTGAGGATGACAGTGTGGAGTCAGCGAAGACCGTGAAGCAATGGAATGTCAAGATTATCTCGGTAACGATTGTGGATTTAGCTCTCATCTTTAAAATCTGTAAAACTACAATTTTTGTGCAGATCACGACAATTTGCTTTTAATTCTATATGATTATTATGTCTTATCAATTGTATTTTGCTAATGGGATCTGCAGATTAGTAAGAACAAACGCCACCAGGACAGAGCTGCAGCACTTGAGGTGTGGGAGAAACTTGAAGAATTTATGCGGTCACGGTCTCATTGATTCATGCTGAGTCTCTAGGTAGACAACTTGCTACAAGTTGTATTTCCCTTTGTGACCGTCTTTTTGGTTGTAACAATTATTACCCTGATTTCTCATACTTGAGAATCTCTTTTTTTCTTAATAAAGTAAATATCTTCTCTAAATAGCAT</genome_strand>
        <mrna_strand>AAAGATGGGTTGGGTGCTAAGAATCGGATAGATAGGGGGTATGGAGGTGGTGATGAAATAGGATATGATGGAGGGCCCAAGGCGAAAATGCATTTGAAGGGGAGTAAGATAGGGGAGGGTGTTCCCATTATTTTGGTTCCCAGTGCCTTTTCGACTTTGATCACCATCTATAATGTGAAGGACTTTTTGGAGGATGGGGTGTTTATACCAACTGATGTGAAACTGAAGCAGATGAAGGGGTCAAAACCGGACTGTATAACAGTACAAAAGAAGTTTAGTAGGGATAGGGTAGTTACAGCATATGAGGTTAGAGATAAGCCTTCTGCCTTGAAGCCGGAAGATTGGGACCGTGTGGTGGCAGTTTTTGTGTTGGGGAAAGACTGGCAGTTCAAAGATTGGCCTTTTAAGGATCATGTTGAGACCTTTAACAGGG............................................................................................................................................................................................TTGTAGGATTTTTTTTGCGTTTTGAGGATGACAGTGTGGAGTCAGCGAAGACCGTGAAGCAATGGAATGTCAAGATTATCTCG......................................................................................................................................ATTAGTAAGAACAAACGCCACCAGGACAGAGCTGCAGCACTTGAGGTGTGGGAGAAACTTGAAGAATTTATGCGGTCACGGTCTCATTGATTCATGCTGAGTCTCTAGGTAGACAACTTGCTACAAGTTGTATTTCCCTTTGTGACCGTCTTTTTGGTTGTAACAATTATTACCCTGATTTCTCATACTTGAGAATCTCTTTTTTTCTTAATAAAGTAAATATCTTCTCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590446" ref_strand="-" ref_description="SGN-E590446 [44042]">
      <seq>taggatatgatggagggcccaaggcgaaaatgcatttgaaggggagtaagataggggagggtgttcccattattttggttcccagtgcgttttcgactttgatcaccatctataatgtgaaggactttttggaggatggggtgtttatacctactgatgtgaaactgaagcagatgaaggggtcaaaaccggattgtataacagtacaaaagaagtttagtagggatagggtagttacagcatatgaggttagagataagccttctgccttgaagccggaagattgggaccgtgtggtggcagtttttgtgttggggaaagactggcagttcaaagattggccttttaaggatcatgttgagacctttaacagggttgtaggatttttcttgcgttttgaggatgatagtgtggagtcagcgaagaccgtgaagcaatggaatgtcaagattatctcgataagtaagaacaaacgacaccaggacagagctgcagcacttgaggtgtgggagaaacttgaagaatttatgcggtctcggtctcattgatgcatgctgagtctctaggtagacaacttgctataagttgtatttccctttgtgaccgtcttttcggttgtaaccatgattaacctaatttctcatacttgagaaactcttttttcttaatcaagtaaatatcttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84742" stop="83133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84442" g_stop="84068" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84067" i_stop="83880" i_length="188">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83879" g_stop="83797" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="458" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83796" i_stop="83663" i_length="134">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83662" g_stop="83433" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="687" r_length="229" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E590446" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590446" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="84442" e_stop="84068"/>
          <exon e_start="83879" e_stop="83797"/>
          <exon e_start="83662" e_stop="83433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGATATGATGGAGGGCCCAAGGCGAAAATGCATTTGAAGGGGAGTAAGATAGGGGAGGGTGTTCCCATTATTTTGGTTCCCAGTGCCTTTTCGACTTTGATCACCATCTATAATGTGAAGGACTTTTTGGAGGATGGGGTGTTTATACCAACTGATGTGAAACTGAAGCAGATGAAGGGGTCAAAACCGGACTGTATAACAGTACAAAAGAAGTTTAGTAGGGATAGGGTAGTTACAGCATATGAGGTTAGAGATAAGCCTTCTGCCTTGAAGCCGGAAGATTGGGACCGTGTGGTGGCAGTTTTTGTGTTGGGGAAAGACTGGCAGTTCAAAGATTGGCCTTTTAAGGATCATGTTGAGACCTTTAACAGGGGTAAGTTCTGAATGATTATGTGCAGCTGGATTTTGTCATATTGTTTGTCAAATGATGATAGCCTCTTGTAATACTAGTTACTAAAAGGATTGGAGTAATCTTGTTCGTTCTTAGCTAGAAAAAGTAGTGATCTTTTGGGTCAATTTTCACTTGGAACCTGAAATTAGATTTTCTCATTTTTGCTGCAGTTGTAGGATTTTTTTTGCGTTTTGAGGATGACAGTGTGGAGTCAGCGAAGACCGTGAAGCAATGGAATGTCAAGATTATCTCGGTAACGATTGTGGATTTAGCTCTCATCTTTAAAATCTGTAAAACTACAATTTTTGTGCAGATCACGACAATTTGCTTTTAATTCTATATGATTATTATGTCTTATCAATTGTATTTTGCTAATGGGATCTGCAGATTAGTAAGAACAAACGCCACCAGGACAGAGCTGCAGCACTTGAGGTGTGGGAGAAACTTGAAGAATTTATGCGGTCACGGTCTCATTGATTCATGCTGAGTCTCTAGGTAGACAACTTGCTACAAGTTGTATTTCCCTTTGTGACCGTCTTTTTGGTTGTAACAATTATTACCCTGATTTCTCATACTTGAGAATCTCTTTTTTTCTTAATAAAGTAAATATCTTCTCT</genome_strand>
        <mrna_strand>TAGGATATGATGGAGGGCCCAAGGCGAAAATGCATTTGAAGGGGAGTAAGATAGGGGAGGGTGTTCCCATTATTTTGGTTCCCAGTGCGTTTTCGACTTTGATCACCATCTATAATGTGAAGGACTTTTTGGAGGATGGGGTGTTTATACCTACTGATGTGAAACTGAAGCAGATGAAGGGGTCAAAACCGGATTGTATAACAGTACAAAAGAAGTTTAGTAGGGATAGGGTAGTTACAGCATATGAGGTTAGAGATAAGCCTTCTGCCTTGAAGCCGGAAGATTGGGACCGTGTGGTGGCAGTTTTTGTGTTGGGGAAAGACTGGCAGTTCAAAGATTGGCCTTTTAAGGATCATGTTGAGACCTTTAACAGGG............................................................................................................................................................................................TTGTAGGATTTTTCTTGCGTTTTGAGGATGATAGTGTGGAGTCAGCGAAGACCGTGAAGCAATGGAATGTCAAGATTATCTCG......................................................................................................................................ATAAGTAAGAACAAACGACACCAGGACAGAGCTGCAGCACTTGAGGTGTGGGAGAAACTTGAAGAATTTATGCGGTCTCGGTCTCATTGATGCATGCTGAGTCTCTAGGTAGACAACTTGCTATAAGTTGTATTTCCCTTTGTGACCGTCTTTTCGGTTGTAACCATGATTAACCTAATTTCTCATACTTGAGAAACTC-TTTTTTCTTAATCAAGTAAATATCTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585640" ref_strand="+" ref_description="SGN-E585640 [68102]">
      <seq>cctactgatgtgaaactgaagcagatgaaggggtcaaaaccggattgtataacagtacaaaagaagtttagtagggatagggtagttacagcatatgaggttagagataagccttctgccttgaagccggaagattgggaccgtgtggtggcagtttttgtgttggggaaagactggcagttcaaagattggccttttaaggatcatgttgagacctttaacagggttgtaggatttttcttgcgttttgaggatgatagtgtggagtcagcgaagaccgtgaagcaatggaatgtcaagattatctcgataagtaagaacaaacgacaccaggacagagctgcagcacttgaggtgtgggagaaacttgaagaatttatgcggtctcggtctcattgatgcatgctgagtctctaggtagacaacttgctataagttgtatttccctttgtgaccgtcttttcggttgtaacaatgatgaacctaatttctcatacttgagaaacttttttttcttaatcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84593" stop="83146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84293" g_stop="84068" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84067" i_stop="83880" i_length="188">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83879" g_stop="83797" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="309" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83796" i_stop="83663" i_length="134">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83662" g_stop="83446" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="525" r_length="216" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E585640" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84293" e_stop="84068"/>
          <exon e_start="83879" e_stop="83797"/>
          <exon e_start="83662" e_stop="83446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTGATGTGAAACTGAAGCAGATGAAGGGGTCAAAACCGGACTGTATAACAGTACAAAAGAAGTTTAGTAGGGATAGGGTAGTTACAGCATATGAGGTTAGAGATAAGCCTTCTGCCTTGAAGCCGGAAGATTGGGACCGTGTGGTGGCAGTTTTTGTGTTGGGGAAAGACTGGCAGTTCAAAGATTGGCCTTTTAAGGATCATGTTGAGACCTTTAACAGGGGTAAGTTCTGAATGATTATGTGCAGCTGGATTTTGTCATATTGTTTGTCAAATGATGATAGCCTCTTGTAATACTAGTTACTAAAAGGATTGGAGTAATCTTGTTCGTTCTTAGCTAGAAAAAGTAGTGATCTTTTGGGTCAATTTTCACTTGGAACCTGAAATTAGATTTTCTCATTTTTGCTGCAGTTGTAGGATTTTTTTTGCGTTTTGAGGATGACAGTGTGGAGTCAGCGAAGACCGTGAAGCAATGGAATGTCAAGATTATCTCGGTAACGATTGTGGATTTAGCTCTCATCTTTAAAATCTGTAAAACTACAATTTTTGTGCAGATCACGACAATTTGCTTTTAATTCTATATGATTATTATGTCTTATCAATTGTATTTTGCTAATGGGATCTGCAGATTAGTAAGAACAAACGCCACCAGGACAGAGCTGCAGCACTTGAGGTGTGGGAGAAACTTGAAGAATTTATGCGGTCACGGTCTCATTGATTCATGCTGAGTCTCTAGGTAGACAACTTGCTACAAGTTGTATTTCCCTTTGTGACCGTCTTTTTGGTTGTAACAATTATTACCCTGATTTCTCATACTTGAGAATCTCTTTTTTTCTTAATAAAGT</genome_strand>
        <mrna_strand>CCTACTGATGTGAAACTGAAGCAGATGAAGGGGTCAAAACCGGATTGTATAACAGTACAAAAGAAGTTTAGTAGGGATAGGGTAGTTACAGCATATGAGGTTAGAGATAAGCCTTCTGCCTTGAAGCCGGAAGATTGGGACCGTGTGGTGGCAGTTTTTGTGTTGGGGAAAGACTGGCAGTTCAAAGATTGGCCTTTTAAGGATCATGTTGAGACCTTTAACAGGG............................................................................................................................................................................................TTGTAGGATTTTTCTTGCGTTTTGAGGATGATAGTGTGGAGTCAGCGAAGACCGTGAAGCAATGGAATGTCAAGATTATCTCG......................................................................................................................................ATAAGTAAGAACAAACGACACCAGGACAGAGCTGCAGCACTTGAGGTGTGGGAGAAACTTGAAGAATTTATGCGGTCTCGGTCTCATTGATGCATGCTGAGTCTCTAGGTAGACAACTTGCTATAAGTTGTATTTCCCTTTGTGACCGTCTTTTCGGTTGTAACAATGATGAACCTAATTTCTCATACTTGAGAAACT-TTTTTTTCTTAATCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468246" ref_strand="+" ref_description="SGN-E468246 [cSTB-3-E13]">
      <seq>cgaggccgaaaatgcatttgaaggggagtaagataggggagggtgttcccattattttggttcccagtgcgttttcgactttgatcaccatctataatgtgaaggactttttggaggatggggtgtttatacctactgatgtgaaactgaagcagatgaaggggtcaaaaccggattgtataacagtacaaaagaagtttagtagggatagggtagttacagcatatgaggttagagataagccttctgccttgaagccggaagattgggaccgtgtggtggcagtttttgtgttggggaaagactggcagttcaaagattggccttttaaggatcatgttgagacctttaacagggttgtaggatttttcttgcgttttgaggatgatagtgtggagtcagcgaagaccgtgaagcaatggaatgtcaagattatctcgataagtaagaacaaacgacaccaggacagagctgcagcacttgaggtgtgggagaaacttgaagaatttatgcggtctcggtctcattgatgcatgctgagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84723" stop="83258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84424" g_stop="84068" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84067" i_stop="83880" i_length="188">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83879" g_stop="83797" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="440" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83796" i_stop="83663" i_length="134">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83662" g_stop="83558" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="545" r_length="105" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E468246" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84424" e_stop="84068"/>
          <exon e_start="83879" e_stop="83797"/>
          <exon e_start="83662" e_stop="83558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGGCGAAAATGCATTTGAAGGGGAGTAAGATAGGGGAGGGTGTTCCCATTATTTTGGTTCCCAGTGCCTTTTCGACTTTGATCACCATCTATAATGTGAAGGACTTTTTGGAGGATGGGGTGTTTATACCAACTGATGTGAAACTGAAGCAGATGAAGGGGTCAAAACCGGACTGTATAACAGTACAAAAGAAGTTTAGTAGGGATAGGGTAGTTACAGCATATGAGGTTAGAGATAAGCCTTCTGCCTTGAAGCCGGAAGATTGGGACCGTGTGGTGGCAGTTTTTGTGTTGGGGAAAGACTGGCAGTTCAAAGATTGGCCTTTTAAGGATCATGTTGAGACCTTTAACAGGGGTAAGTTCTGAATGATTATGTGCAGCTGGATTTTGTCATATTGTTTGTCAAATGATGATAGCCTCTTGTAATACTAGTTACTAAAAGGATTGGAGTAATCTTGTTCGTTCTTAGCTAGAAAAAGTAGTGATCTTTTGGGTCAATTTTCACTTGGAACCTGAAATTAGATTTTCTCATTTTTGCTGCAGTTGTAGGATTTTTTTTGCGTTTTGAGGATGACAGTGTGGAGTCAGCGAAGACCGTGAAGCAATGGAATGTCAAGATTATCTCGGTAACGATTGTGGATTTAGCTCTCATCTTTAAAATCTGTAAAACTACAATTTTTGTGCAGATCACGACAATTTGCTTTTAATTCTATATGATTATTATGTCTTATCAATTGTATTTTGCTAATGGGATCTGCAGATTAGTAAGAACAAACGCCACCAGGACAGAGCTGCAGCACTTGAGGTGTGGGAGAAACTTGAAGAATTTATGCGGTCACGGTCTCATTGATTCATGCTGAGTCTC</genome_strand>
        <mrna_strand>CGAGGCCGAAAATGCATTTGAAGGGGAGTAAGATAGGGGAGGGTGTTCCCATTATTTTGGTTCCCAGTGCGTTTTCGACTTTGATCACCATCTATAATGTGAAGGACTTTTTGGAGGATGGGGTGTTTATACCTACTGATGTGAAACTGAAGCAGATGAAGGGGTCAAAACCGGATTGTATAACAGTACAAAAGAAGTTTAGTAGGGATAGGGTAGTTACAGCATATGAGGTTAGAGATAAGCCTTCTGCCTTGAAGCCGGAAGATTGGGACCGTGTGGTGGCAGTTTTTGTGTTGGGGAAAGACTGGCAGTTCAAAGATTGGCCTTTTAAGGATCATGTTGAGACCTTTAACAGGG............................................................................................................................................................................................TTGTAGGATTTTTCTTGCGTTTTGAGGATGATAGTGTGGAGTCAGCGAAGACCGTGAAGCAATGGAATGTCAAGATTATCTCG......................................................................................................................................ATAAGTAAGAACAAACGACACCAGGACAGAGCTGCAGCACTTGAGGTGTGGGAGAAACTTGAAGAATTTATGCGGTCTCGGTCTCATTGATGCATGCTGAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612377" ref_strand="+" ref_description="SGN-E612377 [62139]">
      <seq>gtcaaatgatactacagttcctgtttctgtttcagctggtgttactggcaatgaggagaatgtcttgggtgatgttagggctttggaaaatcaaaaccctattgagttgattaaagctgctgagaagcctttgaaggatagagaagcgattttgttctgtaagaaccgggatttctatagtgtttttacggctgcgttgcgtagagatgaggagcggcaccgggcggaatcgttgcagagaaaagatgggttggttgcaaagaatcggatagatagggggtatggaggtggtgatgaaataggatatgatggagggcccaaggcgaaaatgcatttgaaggggagtaagataggggagggtgttcccattattttggttcccagtgcgttttcgactttgatcaccatctataatgtgaaggactttttggaggatggggtgtttatacctactgatgtgaaactgaagcagatgaaggggtcaaaaccggattgtataacagtacaaaagaagtttagtagggatagggtagttacagcatatgaggttagagataagccttctgccttgaagccgggaagattgggaccgtgtggtggcagtatatgtgttggggcaaagactggcagttcaaagatttggcttttaacggatcatgttgagacctttaacaggggttgtagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85041" stop="83766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84741" g_stop="84068" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84067" i_stop="83880" i_length="188">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83879" g_stop="83872" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="686" r_length="9" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E612377" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84741" e_stop="84068"/>
          <exon e_start="83879" e_stop="83872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAATGATACTTCAGTTCCTGTTTCTGTTTCAGCTGGTGTTACGGGCAATGAGGAGAATGTGATGAGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGCTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAGGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCGTAGAGATGAGGAGCGGCACCGGGCGGAATCCTTGCAGAGAAAAGATGGGTTGGTTGCTAAGAATCGGATAGATAGGGGGTATGGAGGTGGTGATGAAATAGGATATGATGGAGGGCCCAAGGCGAAAATGCATTTGAAGGGGAGTAAGATAGGGGAGGGTGTTCCCATTATTTTGGTTCCCAGTGCCTTTTCGACTTTGATCACCATCTATAATGTGAAGGACTTTTTGGAGGATGGGGTGTTTATACCAACTGATGTGAAACTGAAGCAGATGAAGGGGTCAAAACCGGACTGTATAACAGTACAAAAGAAGTTTAGTAGGGATAGGGTAGTTACAGCATATGAGGTTAGAGATAAGCCTTCTGCCTTGAAGCC-GGAAGATTGGGACCGTGTGGTGGCAGTTTTTGTGTTGGGG-AAAGACTGGCAGTTCAAAGATTGGCCTTTTAA-GGATCATGTTGAGACCTTTAACAGGGGTAAGTTCTGAATGATTATGTGCAGCTGGATTTTGTCATATTGTTTGTCAAATGATGATAGCCTCTTGTAATACTAGTTACTAAAAGGATTGGAGTAATCTTGTTCGTTCTTAGCTAGAAAAAGTAGTGATCTTTTGGGTCAATTTTCACTTGGAACCTGAAATTAGATTTTCTCATTTTTGCTGCAG-TTGTAGGA</genome_strand>
        <mrna_strand>GTCAAATGATACTACAGTTCCTGTTTCTGTTTCAGCTGGTGTTACTGGCAATGAGGAGAATGTCTTGGGTGATGTTAGGGCTTTGGAAAATCAAAACCCTATTGAGTTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAAGCGATTTTGTTCTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCGTAGAGATGAGGAGCGGCACCGGGCGGAATCGTTGCAGAGAAAAGATGGGTTGGTTGCAAAGAATCGGATAGATAGGGGGTATGGAGGTGGTGATGAAATAGGATATGATGGAGGGCCCAAGGCGAAAATGCATTTGAAGGGGAGTAAGATAGGGGAGGGTGTTCCCATTATTTTGGTTCCCAGTGCGTTTTCGACTTTGATCACCATCTATAATGTGAAGGACTTTTTGGAGGATGGGGTGTTTATACCTACTGATGTGAAACTGAAGCAGATGAAGGGGTCAAAACCGGATTGTATAACAGTACAAAAGAAGTTTAGTAGGGATAGGGTAGTTACAGCATATGAGGTTAGAGATAAGCCTTCTGCCTTGAAGCCGGGAAGATTGGGACCGTGTGGTGGCAGTATATGTGTTGGGGCAAAGACTGGCAGTTCAAAGATTTGGCTTTTAACGGATCATGTTGAGACCTTTAACAGGG............................................................................................................................................................................................GTTGTAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559023" ref_strand="+" ref_description="SGN-E559023 [18455]">
      <seq>gtcttgggtgatgttagggttttggaaaatcaaaaccctattgagttgattaaagctgctgagaagcctttgaaggatagagaagcgattttgttttgtaagaaccgggatttctatagtgtttttacggctgcgttgcgtagagatgaggagcggcaccgggccgaatcgttgcagagaaaagatgggttggttgcaaagaatcggatagatagggggtatggaggtggtgatgaaataggatatgatggagggcccaaggcgaaaatgcatttgaaggggagtaagataggggagggtgttcccattattttggttcccagtgcgttttcgactttgatcaccatctataatgtgaaggactttttggaggatggggtgtttatacctactgatgtgaaactgaagcagatgaaggggtcaaaaccggattgtataacagtacaaaagaagtttagtagggatagggtagttacagcatatgaggttagagataagccttctgccttgaagccggaagattgggaccgtgtggtggcagtttaggtgtaggggaaagactggcagttcaaagattgggcttttaaggatcatgttgagacctttaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84980" stop="83771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84680" g_stop="84071" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E559023" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84680" e_stop="84071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGAGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGCTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAGGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCGTAGAGATGAGGAGCGGCACCGGGCGGAATCCTTGCAGAGAAAAGATGGGTTGGTTGCTAAGAATCGGATAGATAGGGGGTATGGAGGTGGTGATGAAATAGGATATGATGGAGGGCCCAAGGCGAAAATGCATTTGAAGGGGAGTAAGATAGGGGAGGGTGTTCCCATTATTTTGGTTCCCAGTGCCTTTTCGACTTTGATCACCATCTATAATGTGAAGGACTTTTTGGAGGATGGGGTGTTTATACCAACTGATGTGAAACTGAAGCAGATGAAGGGGTCAAAACCGGACTGTATAACAGTACAAAAGAAGTTTAGTAGGGATAGGGTAGTTACAGCATATGAGGTTAGAGATAAGCCTTCTGCCTTGAAGCCGGAAGATTGGGACCGTGTGGTGGCAGTTTTTGTGTTGGGGAAAGACTGGCAGTTCAAAGATTGGCCTTTTAAGGATCATGTTGAGACCTTTAACA</genome_strand>
        <mrna_strand>GTCTTGGGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGTTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAAGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCGTAGAGATGAGGAGCGGCACCGGGCCGAATCGTTGCAGAGAAAAGATGGGTTGGTTGCAAAGAATCGGATAGATAGGGGGTATGGAGGTGGTGATGAAATAGGATATGATGGAGGGCCCAAGGCGAAAATGCATTTGAAGGGGAGTAAGATAGGGGAGGGTGTTCCCATTATTTTGGTTCCCAGTGCGTTTTCGACTTTGATCACCATCTATAATGTGAAGGACTTTTTGGAGGATGGGGTGTTTATACCTACTGATGTGAAACTGAAGCAGATGAAGGGGTCAAAACCGGATTGTATAACAGTACAAAAGAAGTTTAGTAGGGATAGGGTAGTTACAGCATATGAGGTTAGAGATAAGCCTTCTGCCTTGAAGCCGGAAGATTGGGACCGTGTGGTGGCAGTTTAGGTGTAGGGGAAAGACTGGCAGTTCAAAGATTGGGCTTTTAAGGATCATGTTGAGACCTTTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585737" ref_strand="+" ref_description="SGN-E585737 [68200]">
      <seq>cataattcagtgacaattcaatccctaatcgatcttccatggatcccctcacactcctccgcgagtacaccatccgcaacgagctccacaagattgtccgcatcggcgacgactaccgtttcggcaatgactatactttcccttgcacaatcgaaaccgcttatcgctccaaacatgttcaagctaatcgctacactctcgaaaccctaatcaacttcatcaccaatcaccacctcaaacacactgaatacattcagcaatctcgttctcttcgtattccggcggttaccctacctgaccgtaaaccccttctcgattatctcaccggaaagactgcatcttcagattctatcgaattcctcaaattccctcagtcaaatgatactacagttcctgtttctgtttcagctggtgttactggcaatgaggagaatgtcttgggtgatgttagggttttggaaaatcaaaaccctattgagttgattaaagctgctgagaagcctttgaaggatagagaagcgattttgttctgtaagaaccgggatttctatagtgtttttacggctgcgttgcgtagagatgaggagcggcaccgggcggaatcgttgcagaggaaagatgggttggttgcaaagaatcggatagatagggggtatggaggtggtgatgaaataggatatgatggagggcccaaggcgaaaatgcatttgaaggggagtaagataggggagggtgttcccattattttggttcccagtgcgttttcgactttgatcaccatctataatgtgaaggactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85398" stop="84014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85117" g_stop="84314" g_length="804"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="801" r_length="801" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E585737" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85117" e_stop="84314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAATTTCAGTGACAATTTTCAATCCCTAATCGATCTTCCATGGACCCCCTCACACTCCTCCGTGAGTACACCATACGCAACGACCTCCACAAGATTGTTCGCATCGGCGACGACTACCGATTCGGCAATGACTACACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTTAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATTGAATTCCTCAAATTCCCTCAGTCGAATGATACTTCAGTTCCTGTTTCTGTTTCAGCTGGTGTTACGGGCAATGAGGAGAATGTGATGAGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGCTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAGGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCGTAGAGATGAGGAGCGGCACCGGGCGGAATCCTTGCAGAGAAAAGATGGGTTGGTTGCTAAGAATCGGATAGATAGGGGGTATGGAGGTGGTGATGAAATAGGATATGATGGAGGGCCCAAGGCGAAAATGCATTTGAAGGGGAGTAAGATAGGGGAGGGTGTTCCCATTATTTTGGTTCCCAGTGCCTTTTCGACTTTGATCACCATCTATAATGTGAAGGACTTTT</genome_strand>
        <mrna_strand>CATAATT-CAGTGACAA--TTCAATCCCTAATCGATCTTCCATGGATCCCCTCACACTCCTCCGCGAGTACACCATCCGCAACGAGCTCCACAAGATTGTCCGCATCGGCGACGACTACCGTTTCGGCAATGACTATACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGCTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTCAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATCGAATTCCTCAAATTCCCTCAGTCAAATGATACTACAGTTCCTGTTTCTGTTTCAGCTGGTGTTACTGGCAATGAGGAGAATGTCTTGGGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGTTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAAGCGATTTTGTTCTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCGTAGAGATGAGGAGCGGCACCGGGCGGAATCGTTGCAGAGGAAAGATGGGTTGGTTGCAAAGAATCGGATAGATAGGGGGTATGGAGGTGGTGATGAAATAGGATATGATGGAGGGCCCAAGGCGAAAATGCATTTGAAGGGGAGTAAGATAGGGGAGGGTGTTCCCATTATTTTGGTTCCCAGTGCGTTTTCGACTTTGATCACCATCTATAATGTGAAGGACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E593972" ref_strand="+" ref_description="SGN-E593972 [37214]">
      <seq>gagctccacaagattgtccgcatcggcgacgactaccgtttcggcaatgactatactttcccttgcacaatcgaaaccgcttatcgctccaaacatgttcaagctaatcgctacactctcgaaaccctaatcaacttcatcaccaatcaccacctcaaacacactgaatacattcagcaatctcgttctcttcgtattccggcggttaccctacctgaccgtaaaccccttctcgattatctcaccggaaagactgcatcttcagattctatcgaattcctcaaattccctcagtcaaatgatactacagttcctgtttctgtttcagctggtgttactggcaatgaggagaatgtcttgggtgatgttagggttttggaaaatcaaaaccctattgagttgattaaagctgctgagaagcctttgaaggatagagaagcgattttgttctgtaagaaccgggatttctatagtgtttttacggctgcgttgcgtagagatgaggagcggcaccgggcggaatcgttgcagaggaaagatgggttggttgcaaagaatcggatagatagggggtatggaggtggtgatgaaataggatatgatggagggcccaaggcgaaaatgcatttgaaggggagtaagatcggggagggtgttcncattattttggttcccagtgcgttttcgacttttgatcaccatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85334" stop="84031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85034" g_stop="84331" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E593972" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E593972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85034" e_stop="84331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTCCACAAGATTGTTCGCATCGGCGACGACTACCGATTCGGCAATGACTACACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTTAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATTGAATTCCTCAAATTCCCTCAGTCGAATGATACTTCAGTTCCTGTTTCTGTTTCAGCTGGTGTTACGGGCAATGAGGAGAATGTGATGAGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGCTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAGGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCGTAGAGATGAGGAGCGGCACCGGGCGGAATCCTTGCAGAGAAAAGATGGGTTGGTTGCTAAGAATCGGATAGATAGGGGGTATGGAGGTGGTGATGAAATAGGATATGATGGAGGGCCCAAGGCGAAAATGCATTTGAAGGGGAGTAAGATAGGGGAGGGTGTTCCCATTATTTTGGTTCCCAGTGCCTTTTCGAC-TTTGATCACCATCTA</genome_strand>
        <mrna_strand>GAGCTCCACAAGATTGTCCGCATCGGCGACGACTACCGTTTCGGCAATGACTATACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGCTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTCAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATCGAATTCCTCAAATTCCCTCAGTCAAATGATACTACAGTTCCTGTTTCTGTTTCAGCTGGTGTTACTGGCAATGAGGAGAATGTCTTGGGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGTTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAAGCGATTTTGTTCTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCGTAGAGATGAGGAGCGGCACCGGGCGGAATCGTTGCAGAGGAAAGATGGGTTGGTTGCAAAGAATCGGATAGATAGGGGGTATGGAGGTGGTGATGAAATAGGATATGATGGAGGGCCCAAGGCGAAAATGCATTTGAAGGGGAGTAAGATCGGGGAGGGTGTTCNCATTATTTTGGTTCCCAGTGCGTTTTCGACTTTTGATCACCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481352" ref_strand="+" ref_description="SGN-E481352 [cSTD-17-L8]">
      <seq>cttttcaatccctaatcgatcttccatggatcccctcaccactcctccgcgagtacaccatccgcaaccgaagcctccacaagattgtccgcatcggcgaacgaactaccgtttcggcaatgactatactttcccttgcacaatcgaaaccgcttatcgctccaaacatgttcaagctaatcagtacactctcgaaaccctaatcaacttcatcaccaatcaccacctcaaacacactgaatacattcagcaatctcgttcccttcgtattccggcggttaccctacctgaccgtaaaccccttctcgattatctcaccggaaagactgcatcttcagattctatcgaattcctcaaattccctcagtcgaatgatactacagttcctgtttctgtttcagctggtgttactggcaatgaggagaatgtcttgggtgatgttagggttttggaaaatcaaaatcctattgagttgattaaagctgctgagaagcctttgaaggatagagaagcgattttgttttgtaagaaccgggatttctatagtgtttttaccgctgcgttgcgtaaagatgaagagcggcaccgggccgaatcgttgcagagaaaagatgggttggttgcaaagaatcggataatagggggtatggaggtggtgatgaaataggatatgatggagggcccaangcgaaaatgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85400" stop="84108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85101" g_stop="84408" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E481352" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85101" e_stop="84408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCAATCCCTAATCGATCTTCCATGGACCCCCTCA-CACTCCTCCGTGAGTACACCATACGCAA-CG-A-CCTCCACAAGATTGTTCGCATCGGCGA-CGA-CTACCGATTCGGCAATGACTACACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTTAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATTGAATTCCTCAAATTCCCTCAGTCGAATGATACTTCAGTTCCTGTTTCTGTTTCAGCTGGTGTTACGGGCAATGAGGAGAATGTGATGAGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGCTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAGGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCGTAGAGATGAGGAGCGGCACCGGGCGGAATCCTTGCAGAGAAAAGATGGGTTGGTTGCTAAGAATCGGATAGATAGGGGGTATGGAGGTGGTGATGAAATAGGATATGATGGAGGGCCCAAGGCGAAAATGCAT</genome_strand>
        <mrna_strand>CTTTTCAATCCCTAATCGATCTTCCATGGATCCCCTCACCACTCCTCCGCGAGTACACCATCCGCAACCGAAGCCTCCACAAGATTGTCCGCATCGGCGAACGAACTACCGTTTCGGCAATGACTATACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCAGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTCAAACACACTGAATACATTCAGCAATCTCGTTCCCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATCGAATTCCTCAAATTCCCTCAGTCGAATGATACTACAGTTCCTGTTTCTGTTTCAGCTGGTGTTACTGGCAATGAGGAGAATGTCTTGGGTGATGTTAGGGTTTTGGAAAATCAAAATCCTATTGAGTTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAAGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTACCGCTGCGTTGCGTAAAGATGAAGAGCGGCACCGGGCCGAATCGTTGCAGAGAAAAGATGGGTTGGTTGCAAAGAATCGGATA-ATAGGGGGTATGGAGGTGGTGATGAAATAGGATATGATGGAGGGCCCAANGCGAAAATGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594647" ref_strand="+" ref_description="SGN-E594647 [37903]">
      <seq>cactcctccgcgagtacaccatccgcaacgagctccacaagattgtccgcatcggcgacgactaccgtttcggcaatgactatactttcccttgcacaatcgaaaccgcttatcgctccaaacatgttcaagctaatcgctacactctcgaaaccctaatcaacttcatcaccaatcaccacctcaaacacactgaatacattcagcaatctcgttctcttcgtattccggcggttaccctacctgaccgtaaaccccttctcgattatctcaccggaaagactgcatcttcagattctatcgaattcctcaaattccctcagtcaaatgatactacagttcctgtttctgtttcagctggtgttactggcaatgaggagaatgtcttgggtgatgttagggttttggaaaatcaaaaccctattgagttgattaaagctgctgagaagcctttgaaggatagagaagcgattttgttctgtaagaaccgggatttctatagtgtttttacggctgcgttgcgtagagatgaggagcggcaccgggcggaatcgttgcagaggaaagatgggttggttgcaaagaatcggatagatagggggtatggaggtggtgatgaaataggatatgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85363" stop="84129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85063" g_stop="84429" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E594647" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E594647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85063" e_stop="84429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCCTCCGTGAGTACACCATACGCAACGACCTCCACAAGATTGTTCGCATCGGCGACGACTACCGATTCGGCAATGACTACACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTTAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATTGAATTCCTCAAATTCCCTCAGTCGAATGATACTTCAGTTCCTGTTTCTGTTTCAGCTGGTGTTACGGGCAATGAGGAGAATGTGATGAGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGCTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAGGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCGTAGAGATGAGGAGCGGCACCGGGCGGAATCCTTGCAGAGAAAAGATGGGTTGGTTGCTAAGAATCGGATAGATAGGGGGTATGGAGGTGGTGATGAAATAGGATATGATGGA</genome_strand>
        <mrna_strand>CACTCCTCCGCGAGTACACCATCCGCAACGAGCTCCACAAGATTGTCCGCATCGGCGACGACTACCGTTTCGGCAATGACTATACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGCTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTCAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATCGAATTCCTCAAATTCCCTCAGTCAAATGATACTACAGTTCCTGTTTCTGTTTCAGCTGGTGTTACTGGCAATGAGGAGAATGTCTTGGGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGTTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAAGCGATTTTGTTCTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCGTAGAGATGAGGAGCGGCACCGGGCGGAATCGTTGCAGAGGAAAGATGGGTTGGTTGCAAAGAATCGGATAGATAGGGGGTATGGAGGTGGTGATGAAATAGGATATGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373945" ref_strand="+" ref_description="SGN-E373945 [TUS-33-G9]">
      <seq>tttcagtgacaattttcaatccctaatcgatcttccatggaccccctcacactcctccgtgagtacaccatacgcaacgacctccacaagattgttcgcatcggcgacgactaccgattcggcaatgactacactttcccttgcacaatcgaaaccgcttatcgctccaaacatgttcaagctaatcggtacactctcgaaaccctaatcaacttcatcaccaatcaccaccttaaacacactgaatacattcagcaatctcgttctcttcgtattccggcggttaccctacctgaccgtaaaccccttctcgattatctcaccggaaagactgcatcttcagattctattgaattcctcaaattccctcagtcgaatgatacttcagttcctgtttctgtttcagctggtgttacgggcaatgaggagaatgtgatgagtgatgttagggttttggaaaatcaaaaccctattgagctgattaaagctgctgagaagcctttgaaggatagagaggcgattttgttttgtaagaaccgggatttctatagtgtttttacggctgcgttgcgtagagatgaggagcggcaccgggcggaatccttgcagagaaaagatgggttggttgctaagaatcggatagatagggggtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85412" stop="84158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85112" g_stop="84458" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E373945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85112" e_stop="84458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGTGACAATTTTCAATCCCTAATCGATCTTCCATGGACCCCCTCACACTCCTCCGTGAGTACACCATACGCAACGACCTCCACAAGATTGTTCGCATCGGCGACGACTACCGATTCGGCAATGACTACACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTTAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATTGAATTCCTCAAATTCCCTCAGTCGAATGATACTTCAGTTCCTGTTTCTGTTTCAGCTGGTGTTACGGGCAATGAGGAGAATGTGATGAGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGCTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAGGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCGTAGAGATGAGGAGCGGCACCGGGCGGAATCCTTGCAGAGAAAAGATGGGTTGGTTGCTAAGAATCGGATAGATAGGGGGTATG</genome_strand>
        <mrna_strand>TTTCAGTGACAATTTTCAATCCCTAATCGATCTTCCATGGACCCCCTCACACTCCTCCGTGAGTACACCATACGCAACGACCTCCACAAGATTGTTCGCATCGGCGACGACTACCGATTCGGCAATGACTACACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTTAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATTGAATTCCTCAAATTCCCTCAGTCGAATGATACTTCAGTTCCTGTTTCTGTTTCAGCTGGTGTTACGGGCAATGAGGAGAATGTGATGAGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGCTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAGGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCGTAGAGATGAGGAGCGGCACCGGGCGGAATCCTTGCAGAGAAAAGATGGGTTGGTTGCTAAGAATCGGATAGATAGGGGGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306677" ref_strand="+" ref_description="SGN-E306677 [cLEY-19-G3]">
      <seq>acaccatacgcaacgacctccacaagattgttcgcatcggcgacgactaccgattcggcaatgactacactttcccttgcacaatcgaaaccgcttatcgctccaaacatgttcaagctaatcggtacactctcgaaaccctaatcaacttcatcaccaatcaccaccttaaacacactgaatacattcagcaatctcgttctcttcgtattccggcggttaccctacctgaccgtaaaccccttctcgattatctcaccggaaagactgcatcttcagattctattgaattcctcaaattccctcagtcgaatgatacttcagttcctgtttctgtttcagctggtgttacgggcaatgaggagaatgtgatgagtgatgttagggttttggaaaatcaaaaccctattgagctgattaaagctgctgagaagcctttgaaggatagagaggcgattttgttttgtaagaaccgggatttctatagtgtttttacggctgcgttgcgtagagatgaggagcggcaccgggcggaatccttgcagagaaaagatgggttggttgctaagaatcggatagatagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85348" stop="84163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85048" g_stop="84463" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E306677" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85048" e_stop="84463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCATACGCAACGACCTCCACAAGATTGTTCGCATCGGCGACGACTACCGATTCGGCAATGACTACACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTTAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATTGAATTCCTCAAATTCCCTCAGTCGAATGATACTTCAGTTCCTGTTTCTGTTTCAGCTGGTGTTACGGGCAATGAGGAGAATGTGATGAGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGCTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAGGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCGTAGAGATGAGGAGCGGCACCGGGCGGAATCCTTGCAGAGAAAAGATGGGTTGGTTGCTAAGAATCGGATAGATAGGGG</genome_strand>
        <mrna_strand>ACACCATACGCAACGACCTCCACAAGATTGTTCGCATCGGCGACGACTACCGATTCGGCAATGACTACACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTTAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATTGAATTCCTCAAATTCCCTCAGTCGAATGATACTTCAGTTCCTGTTTCTGTTTCAGCTGGTGTTACGGGCAATGAGGAGAATGTGATGAGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGCTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAGGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCGTAGAGATGAGGAGCGGCACCGGGCGGAATCCTTGCAGAGAAAAGATGGGTTGGTTGCTAAGAATCGGATAGATAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409627" ref_strand="+" ref_description="SGN-E409627 [PPI-14-J19]">
      <seq>gtacaccatccgcaacgagctccacaagattgtccgcatcggcgacgactaccgtttcggcaatgactatactttcccttgcacaatcgaaaccgcttatcgctccaaacatgttcaagctaatcagtacactctcgaaaccctaatcaacttcatcaccaatcaccacctcaaacacactgaatacattcagcaatctcgttcccttcgtattccggcggttaccctacctgaccgtaaaccccttctcgattatctcaccggaaagactgcatcttcagattctatcgaattcctcaaattccctcagtcgaatgatactacagttcctgtttctgtttcagctggtgttactggcaatgaggagaatgtcttgggtgatgttagggttttggaaaatcaaaatcctattgagttgattaaagctgctgagaagcctttgaaggatagagaagcgattttgttttgtaagaaccgggatttctatagtgtttttacggctgcgttgcgtagagatgaggagcggcaccgggccgaatcgttgcagagaaaagatgggttggttgcaaagaatcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85350" stop="84174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85050" g_stop="84474" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E409627" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85050" e_stop="84474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACACCATACGCAACGACCTCCACAAGATTGTTCGCATCGGCGACGACTACCGATTCGGCAATGACTACACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTTAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATTGAATTCCTCAAATTCCCTCAGTCGAATGATACTTCAGTTCCTGTTTCTGTTTCAGCTGGTGTTACGGGCAATGAGGAGAATGTGATGAGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGCTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAGGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCGTAGAGATGAGGAGCGGCACCGGGCGGAATCCTTGCAGAGAAAAGATGGGTTGGTTGCTAAGAATCGG</genome_strand>
        <mrna_strand>GTACACCATCCGCAACGAGCTCCACAAGATTGTCCGCATCGGCGACGACTACCGTTTCGGCAATGACTATACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCAGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTCAAACACACTGAATACATTCAGCAATCTCGTTCCCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATCGAATTCCTCAAATTCCCTCAGTCGAATGATACTACAGTTCCTGTTTCTGTTTCAGCTGGTGTTACTGGCAATGAGGAGAATGTCTTGGGTGATGTTAGGGTTTTGGAAAATCAAAATCCTATTGAGTTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAAGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCGTAGAGATGAGGAGCGGCACCGGGCCGAATCGTTGCAGAGAAAAGATGGGTTGGTTGCAAAGAATCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332233" ref_strand="+" ref_description="SGN-E332233 [cTOD-17-M17]">
      <seq>ttgttccatacagtagtctctatgaactactagtccaacatactctaatccccttaatttcagtgacaattttcaatccctaatcgatcttccatggaccccctcacactcctccgtgagtacaccatacgcaacgacctccacaagattgttcgcatcggcgacgactaccgattcggcaatgactacactttcccttgcacaatcgaaaccgcttatcgctccaaacatgttcaagctaatcggtacactctcgaaaccctaatcaacttcatcaccaatcaccaccttaaacacactgaatacattcagcaatctcgttctcttcgtattccggcggttaccctacctgaccgtaaaccccttctcgattatctcaccggaaagactgcatcttcagattctattgaattcctcaaattccctcagtcgaatgatacttcagttcctgtttctgtttcagctggtgttacgggcaatgaggagaatgtgatgagtgatgttagggttttggaaaatcaaaaccctattgagctgattaaagctgctgagaagcctttgaaggatagagaggcgattttgttttgtaagaaccgggatttctatagtgtttttacggctgcgttgcgtaaagatgangagcggcaccgggcggaatccttgcagagaaaagatgggttggttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85469" stop="84182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85169" g_stop="84482" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E332233" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85169" e_stop="84482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCCATACAGTAGTCTCTATGAACTACTAGTCCAACATACTCTAATCCCCTTAATTTCAGTGACAATTTTCAATCCCTAATCGATCTTCCATGGACCCCCTCACACTCCTCCGTGAGTACACCATACGCAACGACCTCCACAAGATTGTTCGCATCGGCGACGACTACCGATTCGGCAATGACTACACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTTAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATTGAATTCCTCAAATTCCCTCAGTCGAATGATACTTCAGTTCCTGTTTCTGTTTCAGCTGGTGTTACGGGCAATGAGGAGAATGTGATGAGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGCTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAGGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCGTAGAGATGAGGAGCGGCACCGGGCGGAATCCTTGCAGAGAAAAGATGGGTTGGTTGCTA</genome_strand>
        <mrna_strand>TTGTTCCATACAGTAGTCTCTATGAACTACTAGTCCAACATACTCTAATCCCCTTAATTTCAGTGACAATTTTCAATCCCTAATCGATCTTCCATGGACCCCCTCACACTCCTCCGTGAGTACACCATACGCAACGACCTCCACAAGATTGTTCGCATCGGCGACGACTACCGATTCGGCAATGACTACACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTTAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATTGAATTCCTCAAATTCCCTCAGTCGAATGATACTTCAGTTCCTGTTTCTGTTTCAGCTGGTGTTACGGGCAATGAGGAGAATGTGATGAGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGCTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAGGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCGTAAAGATGANGAGCGGCACCGGGCGGAATCCTTGCAGAGAAAAGATGGGTTGGTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418035" ref_strand="+" ref_description="SGN-E418035 [STM-26-D12]">
      <seq>cataatttcagtgacaattttcaatccctaatcgatcttccatggatcccctcacactcctccgcgagtacaccatccgcaacgagctccacaagattgtccgcatcggcgacgactaccgtttcggcaatgactatactttcccttgcacaatcgaaaccgcttatcgctccaaacatgttcaagctaatcgctacactctcgaaaccctaatcaacttcatcaccaatcaccacctcaaacacactgaatacattcagcaatctcgttctcttcgtattccggcggttaccctacctgaccgtaaaccccttctcgattatctcaccggaaagactgcatcttcagattctatcgaattcctcaaattccctcagtcaaatgatactacagttcctgtttctgtttcagctggtgttactggcaatgaggagaatgtcttgggtgatgttagggtttttggaaaatcaaaaccctattgagttgattaaagctgctgagaagcctttgaaggatagagaagcgattttgttctgtaagaaccgggatttctatagtgtttttacggctgcgttgcgtaaagatgaggagcggcaccgggcggaatcgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85417" stop="84206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85117" g_stop="84506" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E418035" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85117" e_stop="84506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAATTTCAGTGACAATTTTCAATCCCTAATCGATCTTCCATGGACCCCCTCACACTCCTCCGTGAGTACACCATACGCAACGACCTCCACAAGATTGTTCGCATCGGCGACGACTACCGATTCGGCAATGACTACACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTTAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATTGAATTCCTCAAATTCCCTCAGTCGAATGATACTTCAGTTCCTGTTTCTGTTTCAGCTGGTGTTACGGGCAATGAGGAGAATGTGATGAGTGATGTTAGGG-TTTTGGAAAATCAAAACCCTATTGAGCTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAGGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCGTAGAGATGAGGAGCGGCACCGGGCGGAATCCTTGC</genome_strand>
        <mrna_strand>CATAATTTCAGTGACAATTTTCAATCCCTAATCGATCTTCCATGGATCCCCTCACACTCCTCCGCGAGTACACCATCCGCAACGAGCTCCACAAGATTGTCCGCATCGGCGACGACTACCGTTTCGGCAATGACTATACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGCTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTCAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATCGAATTCCTCAAATTCCCTCAGTCAAATGATACTACAGTTCCTGTTTCTGTTTCAGCTGGTGTTACTGGCAATGAGGAGAATGTCTTGGGTGATGTTAGGGTTTTTGGAAAATCAAAACCCTATTGAGTTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAAGCGATTTTGTTCTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCGTAAAGATGAGGAGCGGCACCGGGCGGAATCGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305612" ref_strand="+" ref_description="SGN-E305612 [cLEX-14-B11]">
      <seq>tttcagtgacaattttcaatccctaatcgatcttccatggaccccctcacactcctccgtgagtacaccatacgcaacgacctccacaagattgttcgcatcggcgacgactaccgattcggcaatgactacactttcccttgcacaatcgaaaccgcttatcgctccaaacatgttcaagctaatcggtacactctcgaaaccctaatcaacttcatcaccaatcaccaccttaaacacactgaatacattcagcaatctcgttctcttcgtattccggcggttaccctacctgaccgtaaaccccttctcgattatctcaccggaaagactgcatcttcagattctattgaattcctcaaattccctcagtcgaatgatacttcagttcctgtttctgtttcagctggtgttacgggcaatgaggagaatgtgatgagtgatgttagggttttggaaaatcaaaaccctattgagctgattaaagctgctgagaagcctttgaaggatagagaggcgattttgttttgtaagaaccgggatttctatagtgtttttacggctgcgttgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85412" stop="84241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85112" g_stop="84541" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E305612" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85112" e_stop="84541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGTGACAATTTTCAATCCCTAATCGATCTTCCATGGACCCCCTCACACTCCTCCGTGAGTACACCATACGCAACGACCTCCACAAGATTGTTCGCATCGGCGACGACTACCGATTCGGCAATGACTACACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTTAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATTGAATTCCTCAAATTCCCTCAGTCGAATGATACTTCAGTTCCTGTTTCTGTTTCAGCTGGTGTTACGGGCAATGAGGAGAATGTGATGAGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGCTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAGGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCG</genome_strand>
        <mrna_strand>TTTCAGTGACAATTTTCAATCCCTAATCGATCTTCCATGGACCCCCTCACACTCCTCCGTGAGTACACCATACGCAACGACCTCCACAAGATTGTTCGCATCGGCGACGACTACCGATTCGGCAATGACTACACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTTAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATTGAATTCCTCAAATTCCCTCAGTCGAATGATACTTCAGTTCCTGTTTCTGTTTCAGCTGGTGTTACGGGCAATGAGGAGAATGTGATGAGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGCTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAGGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470988" ref_strand="+" ref_description="SGN-E470988 [cSTB-21-D22]">
      <seq>atttcagtgacaattttcaatccctaatcgatcttccatggatcccctcacactcctccgcgagtacaccatccgcaacgagctccacaagattgtccgcatcggcgacgactaccgtttcggcaatgactatactttcccttgcacaatcgaaaccgcttatcgctccaaacatgttcaagctaatcgctacactctcgaaaccctaatcaacttcatcaccaatcaccacctcaaacacactgaatacattcagcaatctcgttctcttcgtattccggcggttaccctacctgaccgtaaaccccttctcgattatctcaccggaaagactgcatcttcagattctatcgaattcctcaaattccctcagtcaaatgatactacagttcctgtttctgtttcagctggtgttactggcaatgaggagaatgtcttgggtgatgttagggttttggaaaatcaaaaccctattgagttgattaaagctgctgagaagcctttgaaggatagagaagcgattttgttctgtaagaaccgggatttctatagtgttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85413" stop="84254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85113" g_stop="84554" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E470988" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85113" e_stop="84554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAGTGACAATTTTCAATCCCTAATCGATCTTCCATGGACCCCCTCACACTCCTCCGTGAGTACACCATACGCAACGACCTCCACAAGATTGTTCGCATCGGCGACGACTACCGATTCGGCAATGACTACACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTTAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATTGAATTCCTCAAATTCCCTCAGTCGAATGATACTTCAGTTCCTGTTTCTGTTTCAGCTGGTGTTACGGGCAATGAGGAGAATGTGATGAGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGCTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAGGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTA</genome_strand>
        <mrna_strand>ATTTCAGTGACAATTTTCAATCCCTAATCGATCTTCCATGGATCCCCTCACACTCCTCCGCGAGTACACCATCCGCAACGAGCTCCACAAGATTGTCCGCATCGGCGACGACTACCGTTTCGGCAATGACTATACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGCTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTCAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATCGAATTCCTCAAATTCCCTCAGTCAAATGATACTACAGTTCCTGTTTCTGTTTCAGCTGGTGTTACTGGCAATGAGGAGAATGTCTTGGGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGTTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAAGCGATTTTGTTCTGTAAGAACCGGGATTTCTATAGTGTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358711" ref_strand="+" ref_description="SGN-E358711 [cLHT-22-L18]">
      <seq>cgccactacctccacaagattgtccgcatcggcgacgactaccgattcggcaatgactacactttcccttgcacaatcgaaaccgcttatcgctccaaacatgttcaagctaatcggtacactctcgaaaccctaatcaacttcatcaccaatcaccaccttaaacacactgaatacattcagcaatctcgttctcttcgtgttccggcggttaccctacctgaccgtaaaccccttctcgattatctcaccggaaagactgcatcttcagattctattgaattcctcaaattccctcagtcaaatgatacctcagttcctgtttctgtttcagctggtgttacaggcaatgaggagaatgtgatgagtgatgttagggttttggaaaatcaaaaccctattgagttgattaaagctgctgagaagcctttgaaggatagagaggcgattttgttttgtaagaaccgggatttctatagtgttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85340" stop="84254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85040" g_stop="84554" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E358711" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85040" e_stop="84554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAACGACCTCCACAAGATTGTTCGCATCGGCGACGACTACCGATTCGGCAATGACTACACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTTAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATTGAATTCCTCAAATTCCCTCAGTCGAATGATACTTCAGTTCCTGTTTCTGTTTCAGCTGGTGTTACGGGCAATGAGGAGAATGTGATGAGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGCTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAGGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTA</genome_strand>
        <mrna_strand>CGCCACTACCTCCACAAGATTGTCCGCATCGGCGACGACTACCGATTCGGCAATGACTACACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTTAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTGTTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATTGAATTCCTCAAATTCCCTCAGTCAAATGATACCTCAGTTCCTGTTTCTGTTTCAGCTGGTGTTACAGGCAATGAGGAGAATGTGATGAGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGTTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAGGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479556" ref_strand="+" ref_description="SGN-E479556 [cSTD-10-M2]">
      <seq>attttcaatccctaatcgatcttccatggatcccctcacactcctccgcgagtacaccatccgcaacgagctccacaagattgtccgcatcggcgacgactaccgtttcggcaatgactatactttcccttgcacaatcgaaaccgcttatcgctccaaacatgttcaagctaatcagtacactctcgaaaccctaatcaacttcatcaccaatcaccacctcaaacacactgaatacattcagcaatctcgttcccttcgtattccggcggttaccctacctgaccgtaaaccccttctcgattatctcaccggaaagactgcatcttcagattctatcgaattcctcaaattccctcagtcgaatgatactacagttcctgtttctgtttcagctggtgttactggcaatgaggagaatgtcttgggtgatgttagggttttggaaaatcaaaatcctattgagttgattaaagctgctgagaagcctttgaaggatagagaagcgattttgttttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85401" stop="84281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85101" g_stop="84581" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E479556" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85101" e_stop="84581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCAATCCCTAATCGATCTTCCATGGACCCCCTCACACTCCTCCGTGAGTACACCATACGCAACGACCTCCACAAGATTGTTCGCATCGGCGACGACTACCGATTCGGCAATGACTACACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTTAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATTGAATTCCTCAAATTCCCTCAGTCGAATGATACTTCAGTTCCTGTTTCTGTTTCAGCTGGTGTTACGGGCAATGAGGAGAATGTGATGAGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGCTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAGGCGATTTTGTTTTGTA</genome_strand>
        <mrna_strand>ATTTTCAATCCCTAATCGATCTTCCATGGATCCCCTCACACTCCTCCGCGAGTACACCATCCGCAACGAGCTCCACAAGATTGTCCGCATCGGCGACGACTACCGTTTCGGCAATGACTATACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCAGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTCAAACACACTGAATACATTCAGCAATCTCGTTCCCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATCGAATTCCTCAAATTCCCTCAGTCGAATGATACTACAGTTCCTGTTTCTGTTTCAGCTGGTGTTACTGGCAATGAGGAGAATGTCTTGGGTGATGTTAGGGTTTTGGAAAATCAAAATCCTATTGAGTTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAAGCGATTTTGTTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306681" ref_strand="+" ref_description="SGN-E306681 [cLEY-19-G15]">
      <seq>gaggtacaccatatgtaacgacctccacaagattgttcgcatcggcgacgactactcgattcggcaatgactacacctttcccttgcacaatcgaaaccgcttatcgctccaaacatgttcaagctaatcggtacactctcgaaaccctaatcaacttcatcaccaatcaccaccttaaacacacctgaataccattcagcaatctcgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0307J13-lxqXm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0307J13.1" temp_strand="-" temp_description="C06HBa0307J13.1  AC211075.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0307J13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85352" stop="84546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85054" g_stop="84846" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0307J13.1" gen_strand="-" ref_id="SGN-E306681" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>209</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0307J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85054" e_stop="84846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGTACACCATACGCAACGACCTCCACAAGATTGTTCGCATCGGCGACGACTAC-CGATTCGGCAATGACTACA-CTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTTAAACACA-CTGAATA-CATTCAGCAATCTCGTTCT</genome_strand>
        <mrna_strand>GAG-GTACACCATATGTAACGACCTCCACAAGATTGTTCGCATCGGCGACGACTACTCGATTCGGCAATGACTACACCTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTTAAACACACCTGAATACCATTCAGCAATCTCGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>55</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="10464" PGL_stop="3744"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9361" e_stop="8393"/>
            <exon e_start="8317" e_stop="8147"/>
            <exon e_start="6279" e_stop="4825"/>
            <exon e_start="4482" e_stop="3744"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.362" acc_prob="0.983" e_score="0.998"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.994"/>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="0.999"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="9361" e_stop="8393" e_length="969"/>
          </exon>
          <intron i_serial="1" don_prob="0.362" acc_prob="0.983">
            <gDNA_intron_boundary i_start="8392" i_stop="8318" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="8317" e_stop="8147" e_length="171"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="8146" i_stop="6280" i_length="1867"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="6279" e_stop="4825" e_length="1455"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="4824" i_stop="4483" i_length="342"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="4482" e_stop="3744" e_length="739"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9361" stop="8393"/>
              <exon start="8317" stop="8147"/>
              <exon start="6279" stop="4825"/>
              <exon start="4482" stop="3827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5844" stop="5421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5590" stop="4901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4229" stop="3744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4229" stop="3744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4229" stop="3744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356748" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGACGATCAGATTGTTTGTGTAAAAGTGATTTGGTTTAAGTGTTAAGTAGGGTTACTTTGCTGTGGTAATTCATTCATGTTTACTTTCTCCATGAATCTTAATACTTGGCTATTGTATAATAACTTTGGTTGAAAGCTGCAGATTCTTCTTGAAATTCATCTTAATTACTCATGGGCACAATTTCTTATAAGTCGGATGATGAATACTCAACTATTACTGACAAAGGAGACATCGGATTTGTCGACTTTGACAAATATAAATCAGCTGGTAGCTACAATCCAAATGAAGAGAGTGATATAGTTGTTATATCTGTTCCATTTCCGCTGGTAGCAGGAAAACCTAAATCAGGATTTGTTGGGGAAACTGTTGTTGATTCAGTCACAATAGAGAATACCACCAATGAAACCCAGGAGCTGTGGTCAATTAAGATCTATAACTCAAAACCTGAGGATTCATTCACTCTTTCTCTGATGAAACCTCCAACTGATAGTTCTGATTTGCAATATGTTGAAGAATTCATGGAATCCTTTAGCTTAGAGGATAGAATGTTACGGCCAGGTCAAACACTTACAGTATGGCTGACTTGTAAACCCAAAGAAATTGGATTGCACACATCAGCTGTGCATTTCAATGTGGGTGATGACACCATAGAAAGATTAGTTTTTGTCTTGGCTGAGGATAAGGTTTCCCAGTCTCTGGCTTCAAGGAGGCCGTTCCACAGAGACAGAAAGAAGAAAGTACCAGCAGTAGATGTTTTTGCTGCAAATGCATTTGTTGTGGGTTCCCGTCCTACAAGGGCTCCAAATCGAGGTTTCAGATACAGACTTCCTTCATATCCAATTCCAGGTGATATACGGGAAATGATAGAGAACAAACAATTTCCTGATGTTATTGGGGAAGGTTTAAGAAGAGACAATTATATTGCTTATTTTAGAACTTTACTAGCAATTGAAGAAATCAAGATGGAG : GAAGACATGAGGGACTATGATATGTTGTCAGTCACCATGAAGCGCAAAGGACTACAGTTCTTGTCCCTTGATGTCCCAGGGCTAGCCGAGAGGAGGCCATCACTTGTTTATGGAGATTTTATCTTTGCAAGGCTAGCTTCTGGAGATGCTAGTGAGATCACCCCTTACCAG : GGTTATATCCACCGAGTTGAGGCGGAAGAAGTATATTTGAAGTTTGATGAAGAATTCCACATCAACCATGTTCCTGGAAATCTGTACAATGTGCAATTTTCATTCAATCGTACGGGTGTGCGGAGGTTACATCAAGCCATTGAAGCTACAGAAAGCTTAAATGGAGAAATTCTCTTTCCATCAGGCATATCCAGAACGAGAAATATACAAGCTGCTAGACTGGCACCTAATTCATGTATGCTTAACAAGGAACAAACAACTGCAGTTGAAAAGATTCTTGGGTGCAAAGGAGGGGCTCCATATGTTATCCATGGGCCTCCTGGTACAGGCAAAACAAGGACTCTTATAGAAGCTATCATCCAGGTACGTATTATGAGGAAAGATGCTCGAGTTCTTGTCTGTGCACCTTCAAATAGTGCTGCAGACCATATACTTGAGAAACTTGTCAGTCAGCAGAATGTTGAAGTGCAGGACAATGAGATTCTTAGGTTGAATGCACTCACACGTCCTTTAGATGATGTGAATCCTAGTTACCTTCGTTTTTGCAATGCTGAAGATAATTCTTTTAAGTGCCCCCTTCTCAGGGACCTTAAAAGATATACGGTTATTATATCTACATATGCTAGTGCATGTCTTCTTTATTCAGAGGGCATCAAACGGGGACACTTCTCTCATATTTTCTTGGATGAGGCAGGACAGGCATCAGAGCCTGATACCATGGTTCCTCTATCACATCTTTTAAAGAAAGAGACAGTCGTTGTACTTGCTGGTGACCCACAGCAACTTGGTCCCATTGTTTTCTCAAAAGATGCTGAAAATTATGGATTGGCAACTTCATATATGGAGAGGTTATTTGAATGCCAGTTATATGGTGATCTCAACGAAAATTATGCTACCAGACTAGTAAGGAATTATCGGTGTCATCCGGTAATTCTGCAGCTTCCCTCAGAAATGTTTTATGAAGGAGAGTTGATCCCATGTAAAGAAGATAAAACTTTTACCCAGACTTGGGTGGACCTGCTTCCAAACAAGGAATTTCCGTTGGTTTTCATTGGCATACAGGGTTGTGATGAAAGAGAAGGAAGCAACCCATCATGGTTCAACAGGATCGAAGCAAGCAAGGTGGTAGAGATCATCAGAGATCTGATAGGGAACAAAGGTCTGAAAGAGGAAGATATTGGGGTGATAACACCTTATAGGCAGCAAGTACTGAAAATAAGAACAGCCCTTGAGAGCTTTGAGTGGGCTAATATAAAGGTTGGCAGCGTAGAGCAATTCCAAGGTCAGGAGAGAGAAGTTATTATCATATCGACCGTCCGGTCGACGATTCAGCATAATGACTTCGACAGAATCCATTACTTAGGATTCTTAAGCAATCCGAGAAGGTTCAATGTTGCTGCTACAAGAGCCAGATCATTGCTTGTAGTTGTCGGGAATCCACACATCATCTGCAAG : GATCCCTTCTGGAACAAGCTTTTGTGGTATTGTGCAGACAATGACTCCTACAAGGGCTGCTTCTTACCTGAAAAACTGGAGATCCCTCAAGAGGATTTCGGACAAGCAAATAATTGGTTTCAAGAGTATTCCGGACAAGCAAATAATTGGGATGATGTTGGGGCACAAGTAAATAACTGGGACTGTGAAGGAGCAGAAGCTAATGATTGGGACCAAGACCAGGTGGGAAAAGTTAACAATTGGGACCAAGACCAAGGCGGACAAGTCAACAATTGGGACCAAGATGAAGGGGAACTAGCTAAGAATTGGAATGAGGAAGGCACTTGCGTCAATGAAGAGAAACAGAGTTTTCAGCCATCTCCTGATGTTGAGGGTACAACGCACCAAACAGACTACATCCCGGACCCTGTTATGGATGAAGCTGAATGGTCTGATGGTTGGAAATAACTACTCAGTTTATTATGCTAGTGGGTGAATCTTTTGGATGTTACATTGAACCTCAAAACTCAAAGAACCTTTTCAGATTCTGCACTAGAATGTGTGGTTATTGCATTTTGAAAAAATTCAAGCGCAGGAATGCCTGCACTTTAGCTACATGTATAGATGCTATCTATCTATCTATATATTTAAAATGGTTTGGGAAATTCAAGCTCAAAATTTATGTAAAAGCTGATACCTTGAAACCTATATTCCATGAAACGTACTGCAATGAGTGTTATCAGAGCACTTTAAACCTGAT</gDNA_template>
            <first_frame> G  R  S  D  C  L  C  K  S  D  L  V  *  V  L  S  R  V  T  L  L  W  *  F  I  H  V  Y  F  L  H  E  S  *  Y  L  A  I  V  *  *  L  W  L  K  A  A  D  S  S  *  N  S  S  *  L  L  M  G  T  I  S  Y  K  S  D  D  E  Y  S  T  I  T  D  K  G  D  I  G  F  V  D  F  D  K  Y  K  S  A  G  S  Y  N  P  N  E  E  S  D  I  V  V  I  S  V  P  F  P  L  V  A  G  K  P  K  S  G  F  V  G  E  T  V  V  D  S  V  T  I  E  N  T  T  N  E  T  Q  E  L  W  S  I  K  I  Y  N  S  K  P  E  D  S  F  T  L  S  L  M  K  P  P  T  D  S  S  D  L  Q  Y  V  E  E  F  M  E  S  F  S  L  E  D  R  M  L  R  P  G  Q  T  L  T  V  W  L  T  C  K  P  K  E  I  G  L  H  T  S  A  V  H  F  N  V  G  D  D  T  I  E  R  L  V  F  V  L  A  E  D  K  V  S  Q  S  L  A  S  R  R  P  F  H  R  D  R  K  K  K  V  P  A  V  D  V  F  A  A  N  A  F  V  V  G  S  R  P  T  R  A  P  N  R  G  F  R  Y  R  L  P  S  Y  P  I  P  G  D  I  R  E  M  I  E  N  K  Q  F  P  D  V  I  G  E  G  L  R  R  D  N  Y  I  A  Y  F  R  T  L  L  A  I  E  E  I  K  M  E  :  E  D  M  R  D  Y  D  M  L  S  V  T  M  K  R  K  G  L  Q  F  L  S  L  D  V  P  G  L  A  E  R  R  P  S  L  V  Y  G  D  F  I  F  A  R  L  A  S  G  D  A  S  E  I  T  P  Y  Q  :  G  Y  I  H  R  V  E  A  E  E  V  Y  L  K  F  D  E  E  F  H  I  N  H  V  P  G  N  L  Y  N  V  Q  F  S  F  N  R  T  G  V  R  R  L  H  Q  A  I  E  A  T  E  S  L  N  G  E  I  L  F  P  S  G  I  S  R  T  R  N  I  Q  A  A  R  L  A  P  N  S  C  M  L  N  K  E  Q  T  T  A  V  E  K  I  L  G  C  K  G  G  A  P  Y  V  I  H  G  P  P  G  T  G  K  T  R  T  L  I  E  A  I  I  Q  V  R  I  M  R  K  D  A  R  V  L  V  C  A  P  S  N  S  A  A  D  H  I  L  E  K  L  V  S  Q  Q  N  V  E  V  Q  D  N  E  I  L  R  L  N  A  L  T  R  P  L  D  D  V  N  P  S  Y  L  R  F  C  N  A  E  D  N  S  F  K  C  P  L  L  R  D  L  K  R  Y  T  V  I  I  S  T  Y  A  S  A  C  L  L  Y  S  E  G  I  K  R  G  H  F  S  H  I  F  L  D  E  A  G  Q  A  S  E  P  D  T  M  V  P  L  S  H  L  L  K  K  E  T  V  V  V  L  A  G  D  P  Q  Q  L  G  P  I  V  F  S  K  D  A  E  N  Y  G  L  A  T  S  Y  M  E  R  L  F  E  C  Q  L  Y  G  D  L  N  E  N  Y  A  T  R  L  V  R  N  Y  R  C  H  P  V  I  L  Q  L  P  S  E  M  F  Y  E  G  E  L  I  P  C  K  E  D  K  T  F  T  Q  T  W  V  D  L  L  P  N  K  E  F  P  L  V  F  I  G  I  Q  G  C  D  E  R  E  G  S  N  P  S  W  F  N  R  I  E  A  S  K  V  V  E  I  I  R  D  L  I  G  N  K  G  L  K  E  E  D  I  G  V  I  T  P  Y  R  Q  Q  V  L  K  I  R  T  A  L  E  S  F  E  W  A  N  I  K  V  G  S  V  E  Q  F  Q  G  Q  E  R  E  V  I  I  I  S  T  V  R  S  T  I  Q  H  N  D  F  D  R  I  H  Y  L  G  F  L  S  N  P  R  R  F  N  V  A  A  T  R  A  R  S  L  L  V  V  V  G  N  P  H  I  I  C  K  :  D  P  F  W  N  K  L  L  W  Y  C  A  D  N  D  S  Y  K  G  C  F  L  P  E  K  L  E  I  P  Q  E  D  F  G  Q  A  N  N  W  F  Q  E  Y  S  G  Q  A  N  N  W  D  D  V  G  A  Q  V  N  N  W  D  C  E  G  A  E  A  N  D  W  D  Q  D  Q  V  G  K  V  N  N  W  D  Q  D  Q  G  G  Q  V  N  N  W  D  Q  D  E  G  E  L  A  K  N  W  N  E  E  G  T  C  V  N  E  E  K  Q  S  F  Q  P  S  P  D  V  E  G  T  T  H  Q  T  D  Y  I  P  D  P  V  M  D  E  A  E  W  S  D  G  W  K  *  L  L  S  L  L  C  *  W  V  N  L  L  D  V  T  L  N  L  K  T  Q  R  T  F  S  D  S  A  L  E  C  V  V  I  A  F  *  K  N  S  S  A  G  M  P  A  L  *  L  H  V  *  M  L  S  I  Y  L  Y  I  *  N  G  L  G  N  S  S  S  K  F  M  *  K  L  I  P  *  N  L  Y  S  M  K  R  T  A  M  S  V  I  R  A  L  *  T  *  </first_frame>
            <second_frame>  D  D  Q  I  V  C  V  K  V  I  W  F  K  C  *  V  G  L  L  C  C  G  N  S  F  M  F  T  F  S  M  N  L  N  T  W  L  L  Y  N  N  F  G  *  K  L  Q  I  L  L  E  I  H  L  N  Y  S  W  A  Q  F  L  I  S  R  M  M  N  T  Q  L  L  L  T  K  E  T  S  D  L  S  T  L  T  N  I  N  Q  L  V  A  T  I  Q  M  K  R  V  I  *  L  L  Y  L  F  H  F  R  W  *  Q  E  N  L  N  Q  D  L  L  G  K  L  L  L  I  Q  S  Q  *  R  I  P  P  M  K  P  R  S  C  G  Q  L  R  S  I  T  Q  N  L  R  I  H  S  L  F  L  *  *  N  L  Q  L  I  V  L  I  C  N  M  L  K  N  S  W  N  P  L  A  *  R  I  E  C  Y  G  Q  V  K  H  L  Q  Y  G  *  L  V  N  P  K  K  L  D  C  T  H  Q  L  C  I  S  M  W  V  M  T  P  *  K  D  *  F  L  S  W  L  R  I  R  F  P  S  L  W  L  Q  G  G  R  S  T  E  T  E  R  R  K  Y  Q  Q  *  M  F  L  L  Q  M  H  L  L  W  V  P  V  L  Q  G  L  Q  I  E  V  S  D  T  D  F  L  H  I  Q  F  Q  V  I  Y  G  K  *  *  R  T  N  N  F  L  M  L  L  G  K  V  *  E  E  T  I  I  L  L  I  L  E  L  Y  *  Q  L  K  K  S  R  W  R :   K  T  *  G  T  M  I  C  C  Q  S  P  *  S  A  K  D  Y  S  S  C  P  L  M  S  Q  G  *  P  R  G  G  H  H  L  F  M  E  I  L  S  L  Q  G  *  L  L  E  M  L  V  R  S  P  L  T  R :   V  I  S  T  E  L  R  R  K  K  Y  I  *  S  L  M  K  N  S  T  S  T  M  F  L  E  I  C  T  M  C  N  F  H  S  I  V  R  V  C  G  G  Y  I  K  P  L  K  L  Q  K  A  *  M  E  K  F  S  F  H  Q  A  Y  P  E  R  E  I  Y  K  L  L  D  W  H  L  I  H  V  C  L  T  R  N  K  Q  L  Q  L  K  R  F  L  G  A  K  E  G  L  H  M  L  S  M  G  L  L  V  Q  A  K  Q  G  L  L  *  K  L  S  S  R  Y  V  L  *  G  K  M  L  E  F  L  S  V  H  L  Q  I  V  L  Q  T  I  Y  L  R  N  L  S  V  S  R  M  L  K  C  R  T  M  R  F  L  G  *  M  H  S  H  V  L  *  M  M  *  I  L  V  T  F  V  F  A  M  L  K  I  I  L  L  S  A  P  F  S  G  T  L  K  D  I  R  L  L  Y  L  H  M  L  V  H  V  F  F  I  Q  R  A  S  N  G  D  T  S  L  I  F  S  W  M  R  Q  D  R  H  Q  S  L  I  P  W  F  L  Y  H  I  F  *  R  K  R  Q  S  L  Y  L  L  V  T  H  S  N  L  V  P  L  F  S  Q  K  M  L  K  I  M  D  W  Q  L  H  I  W  R  G  Y  L  N  A  S  Y  M  V  I  S  T  K  I  M  L  P  D  *  *  G  I  I  G  V  I  R  *  F  C  S  F  P  Q  K  C  F  M  K  E  S  *  S  H  V  K  K  I  K  L  L  P  R  L  G  W  T  C  F  Q  T  R  N  F  R  W  F  S  L  A  Y  R  V  V  M  K  E  K  E  A  T  H  H  G  S  T  G  S  K  Q  A  R  W  *  R  S  S  E  I  *  *  G  T  K  V  *  K  R  K  I  L  G  *  *  H  L  I  G  S  K  Y  *  K  *  E  Q  P  L  R  A  L  S  G  L  I  *  R  L  A  A  *  S  N  S  K  V  R  R  E  K  L  L  S  Y  R  P  S  G  R  R  F  S  I  M  T  S  T  E  S  I  T  *  D  S  *  A  I  R  E  G  S  M  L  L  L  Q  E  P  D  H  C  L  *  L  S  G  I  H  T  S  S  A  R :   I  P  S  G  T  S  F  C  G  I  V  Q  T  M  T  P  T  R  A  A  S  Y  L  K  N  W  R  S  L  K  R  I  S  D  K  Q  I  I  G  F  K  S  I  P  D  K  Q  I  I  G  M  M  L  G  H  K  *  I  T  G  T  V  K  E  Q  K  L  M  I  G  T  K  T  R  W  E  K  L  T  I  G  T  K  T  K  A  D  K  S  T  I  G  T  K  M  K  G  N  *  L  R  I  G  M  R  K  A  L  A  S  M  K  R  N  R  V  F  S  H  L  L  M  L  R  V  Q  R  T  K  Q  T  T  S  R  T  L  L  W  M  K  L  N  G  L  M  V  G  N  N  Y  S  V  Y  Y  A  S  G  *  I  F  W  M  L  H  *  T  S  K  L  K  E  P  F  Q  I  L  H  *  N  V  W  L  L  H  F  E  K  I  Q  A  Q  E  C  L  H  F  S  Y  M  Y  R  C  Y  L  S  I  Y  I  F  K  M  V  W  E  I  Q  A  Q  N  L  C  K  S  *  Y  L  E  T  Y  I  P  *  N  V  L  Q  *  V  L  S  E  H  F  K  P  D </second_frame>
            <third_frame>   T  I  R  L  F  V  *  K  *  F  G  L  S  V  K  *  G  Y  F  A  V  V  I  H  S  C  L  L  S  P  *  I  L  I  L  G  Y  C  I  I  T  L  V  E  S  C  R  F  F  L  K  F  I  L  I  T  H  G  H  N  F  L  *  V  G  *  *  I  L  N  Y  Y  *  Q  R  R  H  R  I  C  R  L  *  Q  I  *  I  S  W  *  L  Q  S  K  *  R  E  *  Y  S  C  Y  I  C  S  I  S  A  G  S  R  K  T  *  I  R  I  C  W  G  N  C  C  *  F  S  H  N  R  E  Y  H  Q  *  N  P  G  A  V  V  N  *  D  L  *  L  K  T  *  G  F  I  H  S  F  S  D  E  T  S  N  *  *  F  *  F  A  I  C  *  R  I  H  G  I  L  *  L  R  G  *  N  V  T  A  R  S  N  T  Y  S  M  A  D  L  *  T  Q  R  N  W  I  A  H  I  S  C  A  F  Q  C  G  *  *  H  H  R  K  I  S  F  C  L  G  *  G  *  G  F  P  V  S  G  F  K  E  A  V  P  Q  R  Q  K  E  E  S  T  S  S  R  C  F  C  C  K  C  I  C  C  G  F  P  S  Y  K  G  S  K  S  R  F  Q  I  Q  T  S  F  I  S  N  S  R  *  Y  T  G  N  D  R  E  Q  T  I  S  *  C  Y  W  G  R  F  K  K  R  Q  L  Y  C  L  F  *  N  F  T  S  N  *  R  N  Q  D  G   : G  R  H  E  G  L  *  Y  V  V  S  H  H  E  A  Q  R  T  T  V  L  V  P  *  C  P  R  A  S  R  E  E  A  I  T  C  L  W  R  F  Y  L  C  K  A  S  F  W  R  C  *  *  D  H  P  L  P   : G  L  Y  P  P  S  *  G  G  R  S  I  F  E  V  *  *  R  I  P  H  Q  P  C  S  W  K  S  V  Q  C  A  I  F  I  Q  S  Y  G  C  A  E  V  T  S  S  H  *  S  Y  R  K  L  K  W  R  N  S  L  S  I  R  H  I  Q  N  E  K  Y  T  S  C  *  T  G  T  *  F  M  Y  A  *  Q  G  T  N  N  C  S  *  K  D  S  W  V  Q  R  R  G  S  I  C  Y  P  W  A  S  W  Y  R  Q  N  K  D  S  Y  R  S  Y  H  P  G  T  Y  Y  E  E  R  C  S  S  S  C  L  C  T  F  K  *  C  C  R  P  Y  T  *  E  T  C  Q  S  A  E  C  *  S  A  G  Q  *  D  S  *  V  E  C  T  H  T  S  F  R  *  C  E  S  *  L  P  S  F  L  Q  C  *  R  *  F  F  *  V  P  P  S  Q  G  P  *  K  I  Y  G  Y  Y  I  Y  I  C  *  C  M  S  S  L  F  R  G  H  Q  T  G  T  L  L  S  Y  F  L  G  *  G  R  T  G  I  R  A  *  Y  H  G  S  S  I  T  S  F  K  E  R  D  S  R  C  T  C  W  *  P  T  A  T  W  S  H  C  F  L  K  R  C  *  K  L  W  I  G  N  F  I  Y  G  E  V  I  *  M  P  V  I  W  *  S  Q  R  K  L  C  Y  Q  T  S  K  E  L  S  V  S  S  G  N  S  A  A  S  L  R  N  V  L  *  R  R  V  D  P  M  *  R  R  *  N  F  Y  P  D  L  G  G  P  A  S  K  Q  G  I  S  V  G  F  H  W  H  T  G  L  *  *  K  R  R  K  Q  P  I  M  V  Q  Q  D  R  S  K  Q  G  G  R  D  H  Q  R  S  D  R  E  Q  R  S  E  R  G  R  Y  W  G  D  N  T  L  *  A  A  S  T  E  N  K  N  S  P  *  E  L  *  V  G  *  Y  K  G  W  Q  R  R  A  I  P  R  S  G  E  R  S  Y  Y  H  I  D  R  P  V  D  D  S  A  *  *  L  R  Q  N  P  L  L  R  I  L  K  Q  S  E  K  V  Q  C  C  C  Y  K  S  Q  I  I  A  C  S  C  R  E  S  T  H  H  L  Q   : G  S  L  L  E  Q  A  F  V  V  L  C  R  Q  *  L  L  Q  G  L  L  L  T  *  K  T  G  D  P  S  R  G  F  R  T  S  K  *  L  V  S  R  V  F  R  T  S  K  *  L  G  *  C  W  G  T  S  K  *  L  G  L  *  R  S  R  S  *  *  L  G  P  R  P  G  G  K  S  *  Q  L  G  P  R  P  R  R  T  S  Q  Q  L  G  P  R  *  R  G  T  S  *  E  L  E  *  G  R  H  L  R  Q  *  R  E  T  E  F  S  A  I  S  *  C  *  G  Y  N  A  P  N  R  L  H  P  G  P  C  Y  G  *  S  *  M  V  *  W  L  E  I  T  T  Q  F  I  M  L  V  G  E  S  F  G  C  Y  I  E  P  Q  N  S  K  N  L  F  R  F  C  T  R  M  C  G  Y  C  I  L  K  K  F  K  R  R  N  A  C  T  L  A  T  C  I  D  A  I  Y  L  S  I  Y  L  K  W  F  G  K  F  K  L  K  I  Y  V  K  A  D  T  L  K  P  I  F  H  E  T  Y  C  N  E  C  Y  Q  S  T  L  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0307J13.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9196" stop="8393"/>
                    <exon start="8317" stop="8147"/>
                    <exon start="6279" stop="4825"/>
                    <exon start="4482" stop="4036"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2874</number_coding_nucleotides>
                  <number_encoded_amino_acids>958</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLMGTISYKSDDEYSTITDKGDIGFVDFDKYKSAGSYNPNEESDIVVISVPFPLVAGKPKSGFVGETVVDSVTIENTTNETQELWSIKIYNSKPEDSFTLSLMKPPTDSSDLQYVEEFMESFSLEDRMLRPGQTLTVWLTCKPKEIGLHTSAVHFNVGDDTIERLVFVLAEDKVSQSLASRRPFHRDRKKKVPAVDVFAANAFVVGSRPTRAPNRGFRYRLPSYPIPGDIREMIENKQFPDVIGEGLRRDNYIAYFRTLLAIEEIKMEEDMRDYDMLSVTMKRKGLQFLSLDVPGLAERRPSLVYGDFIFARLASGDASEITPYQGYIHRVEAEEVYLKFDEEFHINHVPGNLYNVQFSFNRTGVRRLHQAIEATESLNGEILFPSGISRTRNIQAARLAPNSCMLNKEQTTAVEKILGCKGGAPYVIHGPPGTGKTRTLIEAIIQVRIMRKDARVLVCAPSNSAADHILEKLVSQQNVEVQDNEILRLNALTRPLDDVNPSYLRFCNAEDNSFKCPLLRDLKRYTVIISTYASACLLYSEGIKRGHFSHIFLDEAGQASEPDTMVPLSHLLKKETVVVLAGDPQQLGPIVFSKDAENYGLATSYMERLFECQLYGDLNENYATRLVRNYRCHPVILQLPSEMFYEGELIPCKEDKTFTQTWVDLLPNKEFPLVFIGIQGCDEREGSNPSWFNRIEASKVVEIIRDLIGNKGLKEEDIGVITPYRQQVLKIRTALESFEWANIKVGSVEQFQGQEREVIIISTVRSTIQHNDFDRIHYLGFLSNPRRFNVAATRARSLLVVVGNPHIICKDPFWNKLLWYCADNDSYKGCFLPEKLEIPQEDFGQANNWFQEYSGQANNWDDVGAQVNNWDCEGAEANDWDQDQVGKVNNWDQDQGGQVNNWDQDEGELAKNWNEEGTCVNEEKQSFQPSPDVEGTTHQTDYIPDPVMDEAEWSDGWK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0307J13.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4048" stop="3746"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WLEITTQFIMLVGESFGCYIEPQNSKNLFRFCTRMCGYCILKKFKRRNACTLATCIDAIYLSIYLKWFGKFKLKIYVKADTLKPIFHETYCNECYQSTLNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10464" e_stop="10416"/>
            <exon e_start="9219" e_stop="8416"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="0.980"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="10464" e_stop="10416" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10415" i_stop="9220" i_length="1196"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="9219" e_stop="8416" e_length="804"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10464" stop="10416"/>
              <exon start="9219" stop="8416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739258" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTAGCTTAAAACCCTTCTCTATTCTCTCTTTTAAAGACCAAAATCGAG : ATTCTTCTTGAAATTCATCTTAATTACTCATGGGCACAATTTCTTATAAGTCGGATGATGAATACTCAACTATTACTGACAAAGGAGACATCGGATTTGTCGACTTTGACAAATATAAATCAGCTGGTAGCTACAATCCAAATGAAGAGAGTGATATAGTTGTTATATCTGTTCCATTTCCGCTGGTAGCAGGAAAACCTAAATCAGGATTTGTTGGGGAAACTGTTGTTGATTCAGTCACAATAGAGAATACCACCAATGAAACCCAGGAGCTGTGGTCAATTAAGATCTATAACTCAAAACCTGAGGATTCATTCACTCTTTCTCTGATGAAACCTCCAACTGATAGTTCTGATTTGCAATATGTTGAAGAATTCATGGAATCCTTTAGCTTAGAGGATAGAATGTTACGGCCAGGTCAAACACTTACAGTATGGCTGACTTGTAAACCCAAAGAAATTGGATTGCACACATCAGCTGTGCATTTCAATGTGGGTGATGACACCATAGAAAGATTAGTTTTTGTCTTGGCTGAGGATAAGGTTTCCCAGTCTCTGGCTTCAAGGAGGCCGTTCCACAGAGACAGAAAGAAGAAAGTACCAGCAGTAGATGTTTTTGCTGCAAATGCATTTGTTGTGGGTTCCCGTCCTACAAGGGCTCCAAATCGAGGTTTCAGATACAGACTTCCTTCATATCCAATTCCAGGTGATATACGGGAAATGATAGAGAACAAACAATTTCCTGATGTTATTGGGGAAGGTTTAAGAAGAGACAATTATATTGCTTATTTTAGAACTTTACTAG</gDNA_template>
            <first_frame> L  S  L  K  P  F  S  I  L  S  F  K  D  Q  N  R   : D  S  S  *  N  S  S  *  L  L  M  G  T  I  S  Y  K  S  D  D  E  Y  S  T  I  T  D  K  G  D  I  G  F  V  D  F  D  K  Y  K  S  A  G  S  Y  N  P  N  E  E  S  D  I  V  V  I  S  V  P  F  P  L  V  A  G  K  P  K  S  G  F  V  G  E  T  V  V  D  S  V  T  I  E  N  T  T  N  E  T  Q  E  L  W  S  I  K  I  Y  N  S  K  P  E  D  S  F  T  L  S  L  M  K  P  P  T  D  S  S  D  L  Q  Y  V  E  E  F  M  E  S  F  S  L  E  D  R  M  L  R  P  G  Q  T  L  T  V  W  L  T  C  K  P  K  E  I  G  L  H  T  S  A  V  H  F  N  V  G  D  D  T  I  E  R  L  V  F  V  L  A  E  D  K  V  S  Q  S  L  A  S  R  R  P  F  H  R  D  R  K  K  K  V  P  A  V  D  V  F  A  A  N  A  F  V  V  G  S  R  P  T  R  A  P  N  R  G  F  R  Y  R  L  P  S  Y  P  I  P  G  D  I  R  E  M  I  E  N  K  Q  F  P  D  V  I  G  E  G  L  R  R  D  N  Y  I  A  Y  F  R  T  L  L  </first_frame>
            <second_frame>  L  A  *  N  P  S  L  F  S  L  L  K  T  K  I  E  :  I  L  L  E  I  H  L  N  Y  S  W  A  Q  F  L  I  S  R  M  M  N  T  Q  L  L  L  T  K  E  T  S  D  L  S  T  L  T  N  I  N  Q  L  V  A  T  I  Q  M  K  R  V  I  *  L  L  Y  L  F  H  F  R  W  *  Q  E  N  L  N  Q  D  L  L  G  K  L  L  L  I  Q  S  Q  *  R  I  P  P  M  K  P  R  S  C  G  Q  L  R  S  I  T  Q  N  L  R  I  H  S  L  F  L  *  *  N  L  Q  L  I  V  L  I  C  N  M  L  K  N  S  W  N  P  L  A  *  R  I  E  C  Y  G  Q  V  K  H  L  Q  Y  G  *  L  V  N  P  K  K  L  D  C  T  H  Q  L  C  I  S  M  W  V  M  T  P  *  K  D  *  F  L  S  W  L  R  I  R  F  P  S  L  W  L  Q  G  G  R  S  T  E  T  E  R  R  K  Y  Q  Q  *  M  F  L  L  Q  M  H  L  L  W  V  P  V  L  Q  G  L  Q  I  E  V  S  D  T  D  F  L  H  I  Q  F  Q  V  I  Y  G  K  *  *  R  T  N  N  F  L  M  L  L  G  K  V  *  E  E  T  I  I  L  L  I  L  E  L  Y  * </second_frame>
            <third_frame>   *  L  K  T  L  L  Y  S  L  F  *  R  P  K  S  R :   F  F  L  K  F  I  L  I  T  H  G  H  N  F  L  *  V  G  *  *  I  L  N  Y  Y  *  Q  R  R  H  R  I  C  R  L  *  Q  I  *  I  S  W  *  L  Q  S  K  *  R  E  *  Y  S  C  Y  I  C  S  I  S  A  G  S  R  K  T  *  I  R  I  C  W  G  N  C  C  *  F  S  H  N  R  E  Y  H  Q  *  N  P  G  A  V  V  N  *  D  L  *  L  K  T  *  G  F  I  H  S  F  S  D  E  T  S  N  *  *  F  *  F  A  I  C  *  R  I  H  G  I  L  *  L  R  G  *  N  V  T  A  R  S  N  T  Y  S  M  A  D  L  *  T  Q  R  N  W  I  A  H  I  S  C  A  F  Q  C  G  *  *  H  H  R  K  I  S  F  C  L  G  *  G  *  G  F  P  V  S  G  F  K  E  A  V  P  Q  R  Q  K  E  E  S  T  S  S  R  C  F  C  C  K  C  I  C  C  G  F  P  S  Y  K  G  S  K  S  R  F  Q  I  Q  T  S  F  I  S  N  S  R  *  Y  T  G  N  D  R  E  Q  T  I  S  *  C  Y  W  G  R  F  K  K  R  Q  L  Y  C  L  F  *  N  F  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0307J13.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9196" stop="8417"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLMGTISYKSDDEYSTITDKGDIGFVDFDKYKSAGSYNPNEESDIVVISVPFPLVAGKPKSGFVGETVVDSVTIENTTNETQELWSIKIYNSKPEDSFTLSLMKPPTDSSDLQYVEEFMESFSLEDRMLRPGQTLTVWLTCKPKEIGLHTSAVHFNVGDDTIERLVFVLAEDKVSQSLASRRPFHRDRKKKVPAVDVFAANAFVVGSRPTRAPNRGFRYRLPSYPIPGDIREMIENKQFPDVIGEGLRRDNYIAYFRTLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="18988" PGL_stop="19620"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18988" e_stop="19620"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="18988" e_stop="19620" e_length="633"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18988" stop="19620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241768" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCCGAAAGTTTTTTCTAAAAACAAATTCTGAGGACCTCCATAGGTTGGGGAACCACCACTTACACTTACATCATTTTTTTTTAACTTCTATTTCTGCATTTACAAGCTCTTTTTAAGGAATAACCCAATTTCCTCAATTTTTTGTGTGCTATATAACCCATGAATTTGGCACCCTGAAGCACTCGAAATCTCTTCTAAAAAAATTTATGAGGAACTCCATAATGAGTTGGAAACCACCATATATACTTAGACCATTTTAACGTTTATTTTCGCATTTACATTCACCTTTTAGAAATTATCTAAAATTCTCAATTTTTTGTATGCATAGCCCATGATCTGCCGCTCCACCCCACCCCCACCCCCCTCCCGAAGCACCATAGAAGTTTTTTTCTCAAAATTAACCAGATTCCTCCATTTTTCGTGTGCTAATACCATAGTGGAGCACCCAAATTTTTATTTTCAAAAAAACTTTGTAAGGATCTACATAGTGAGTTGGGAAATTACTACGTATACTCACATCATTTTTTATGCTTATTTCTGCATTTACAAATTCTTTTTAGGAATTATTCAAATTTCTTGATTTGTCATGTGCTACCCCATGGATCTGGCGCCCCAGAGCACCCAAAAATTT</gDNA_template>
            <first_frame> H  P  K  V  F  S  K  N  K  F  *  G  P  P  *  V  G  E  P  P  L  T  L  T  S  F  F  F  N  F  Y  F  C  I  Y  K  L  F  L  R  N  N  P  I  S  S  I  F  C  V  L  Y  N  P  *  I  W  H  P  E  A  L  E  I  S  S  K  K  I  Y  E  E  L  H  N  E  L  E  T  T  I  Y  T  *  T  I  L  T  F  I  F  A  F  T  F  T  F  *  K  L  S  K  I  L  N  F  L  Y  A  *  P  M  I  C  R  S  T  P  P  P  P  P  S  R  S  T  I  E  V  F  F  S  K  L  T  R  F  L  H  F  S  C  A  N  T  I  V  E  H  P  N  F  Y  F  Q  K  N  F  V  R  I  Y  I  V  S  W  E  I  T  T  Y  T  H  I  I  F  Y  A  Y  F  C  I  Y  K  F  F  L  G  I  I  Q  I  S  *  F  V  M  C  Y  P  M  D  L  A  P  Q  S  T  Q  K  F </first_frame>
            <second_frame>  T  R  K  F  F  L  K  T  N  S  E  D  L  H  R  L  G  N  H  H  L  H  L  H  H  F  F  L  T  S  I  S  A  F  T  S  S  F  *  G  I  T  Q  F  P  Q  F  F  V  C  Y  I  T  H  E  F  G  T  L  K  H  S  K  S  L  L  K  K  F  M  R  N  S  I  M  S  W  K  P  P  Y  I  L  R  P  F  *  R  L  F  S  H  L  H  S  P  F  R  N  Y  L  K  F  S  I  F  C  M  H  S  P  *  S  A  A  P  P  H  P  H  P  P  P  E  A  P  *  K  F  F  S  Q  N  *  P  D  S  S  I  F  R  V  L  I  P  *  W  S  T  Q  I  F  I  F  K  K  T  L  *  G  S  T  *  *  V  G  K  L  L  R  I  L  T  S  F  F  M  L  I  S  A  F  T  N  S  F  *  E  L  F  K  F  L  D  L  S  C  A  T  P  W  I  W  R  P  R  A  P  K  N   </second_frame>
            <third_frame>   P  E  S  F  F  *  K  Q  I  L  R  T  S  I  G  W  G  T  T  T  Y  T  Y  I  I  F  F  *  L  L  F  L  H  L  Q  A  L  F  K  E  *  P  N  F  L  N  F  L  C  A  I  *  P  M  N  L  A  P  *  S  T  R  N  L  F  *  K  N  L  *  G  T  P  *  *  V  G  N  H  H  I  Y  L  D  H  F  N  V  Y  F  R  I  Y  I  H  L  L  E  I  I  *  N  S  Q  F  F  V  C  I  A  H  D  L  P  L  H  P  T  P  T  P  L  P  K  H  H  R  S  F  F  L  K  I  N  Q  I  P  P  F  F  V  C  *  Y  H  S  G  A  P  K  F  L  F  S  K  K  L  C  K  D  L  H  S  E  L  G  N  Y  Y  V  Y  S  H  H  F  L  C  L  F  L  H  L  Q  I  L  F  R  N  Y  S  N  F  L  I  C  H  V  L  P  H  G  S  G  A  P  E  H  P  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0307J13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19318" stop="19569"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMICRSTPPPPPSRSTIEVFFSKLTRFLHFSCANTIVEHPNFYFQKNFVRIYIVSWEITTYTHIIFYAYFCIYKFFLGIIQIS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0307J13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19419" stop="19619"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YHSGAPKFLFSKKLCKDLHSELGNYYVYSHHFLCLFLHLQILFRNYSNFLICHVLPHGSGAPEHPKI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="22042" PGL_stop="22356"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22042" e_stop="22356"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="22042" e_stop="22356" e_length="315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22042" stop="22356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241769" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAAAGATGTCTTATACCTTCCCTTCAAAATAAATTAGAACCCTTACGTAGAATCATATAAAGTTAGTAATTTAGTAAAATAGATGTCCTAATTCACCTTTTAACATAATTAGGTGGCGATTCTTTAAAATAGAATCAAGATTCACCAATATGTTGTACACAGTACGAACCTCAAGTTAAAATGAGGTATAACAATCTGTTCTTTGTTTTCTTAGTTTGTGTTTTTGTGTTCCTCTGAAGTTTGTAATAGAGTACACACCAGATAATCAAACATGATAACTTTCCACCATGTCTGGTTCTCTTTATGCCGTTGA</gDNA_template>
            <first_frame> L  K  D  V  L  Y  L  P  F  K  I  N  *  N  P  Y  V  E  S  Y  K  V  S  N  L  V  K  *  M  S  *  F  T  F  *  H  N  *  V  A  I  L  *  N  R  I  K  I  H  Q  Y  V  V  H  S  T  N  L  K  L  K  *  G  I  T  I  C  S  L  F  S  *  F  V  F  L  C  S  S  E  V  C  N  R  V  H  T  R  *  S  N  M  I  T  F  H  H  V  W  F  S  L  C  R  * </first_frame>
            <second_frame>  *  K  M  S  Y  T  F  P  S  K  *  I  R  T  L  T  *  N  H  I  K  L  V  I  *  *  N  R  C  P  N  S  P  F  N  I  I  R  W  R  F  F  K  I  E  S  R  F  T  N  M  L  Y  T  V  R  T  S  S  *  N  E  V  *  Q  S  V  L  C  F  L  S  L  C  F  C  V  P  L  K  F  V  I  E  Y  T  P  D  N  Q  T  *  *  L  S  T  M  S  G  S  L  Y  A  V   </second_frame>
            <third_frame>   K  R  C  L  I  P  S  L  Q  N  K  L  E  P  L  R  R  I  I  *  S  *  *  F  S  K  I  D  V  L  I  H  L  L  T  *  L  G  G  D  S  L  K  *  N  Q  D  S  P  I  C  C  T  Q  Y  E  P  Q  V  K  M  R  Y  N  N  L  F  F  V  F  L  V  C  V  F  V  F  L  *  S  L  *  *  S  T  H  Q  I  I  K  H  D  N  F  P  P  C  L  V  L  F  M  P  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0307J13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="23711" PGL_stop="22082"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23711" e_stop="23655"/>
            <exon e_start="23245" e_stop="23168"/>
            <exon e_start="22708" e_stop="22082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.515" e_score="0.949"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23711" e_stop="23655" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.948">
            <gDNA_intron_boundary i_start="23654" i_stop="23246" i_length="409"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="23245" e_stop="23168" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.515">
            <gDNA_intron_boundary i_start="23167" i_stop="22709" i_length="459"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="22708" e_stop="22082" e_length="627"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23711" stop="23655"/>
              <exon start="23245" stop="23168"/>
              <exon start="22708" stop="22289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320670" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22708" stop="22082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22587" stop="22114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544309" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGTAGAAGTGAGGACATAAATCCTCAGTGTCTGGTGTACTCCCCTTTTTTGTCTAG : ATTCGGGCAGGCGTTGCTTTGGAAAACTCAACCACAAAGGGATACTGGGGACCATCCATATCCCACAAATTGAAAAAG : AATCTTCGAGCTTGGTGGCTTTGGTGAGATTATGGCCAGCCATGCAAGAGAGCACGGTGTGTCAACACAGTTGATGTCTGAGCTGTGGCTACGAGTCTGCTTTTGGTATCTCAGTTATGGAAGATCAAGTTGTTGTAGGTCCTTGAGAAGGTGAAGTTAACTACAGTCAACAGAACAAACTGTCTTTGGGACTCTTTTCCCCTTGAGCATTGGAAGCTGAAGCTAATGCCTCGCCACGATACTAATTAGCTTCTTCTTGTTTGGTCAATTTTTAACAAGATGAGCTCGAGCTACGGTTAAATAGGACTACCAAGAGAGAAAATGACAGTTCAATTTGTTTTAGACCAAAGATTCAACGGCATAAAGAGAACCAGACATGGTGGAAAGTTATCATGTTTGATTATCTGGTGTGTACTCTATTACAAACTTCAGAGGAACACAAAAACACAAACTAAGAAAACAAAGAACAGATTGTTATACCTCATTTTAACTTGAGGTTCGTACTGTGTACAACATATTGGTGAATCTTGATTCTATTTTAAAGAATCGCCACCTAATTATGTTAAAAGGTGAATTAGGACATCTATTTTACTAAATTACTAACTTTATATGATTCTACGTAAGGGT</gDNA_template>
            <first_frame> K  *  K  *  G  H  K  S  S  V  S  G  V  L  P  F  F  V  *  :  I  R  A  G  V  A  L  E  N  S  T  T  K  G  Y  W  G  P  S  I  S  H  K  L  K  K  :  N  L  R  A  W  W  L  W  *  D  Y  G  Q  P  C  K  R  A  R  C  V  N  T  V  D  V  *  A  V  A  T  S  L  L  L  V  S  Q  L  W  K  I  K  L  L  *  V  L  E  K  V  K  L  T  T  V  N  R  T  N  C  L  W  D  S  F  P  L  E  H  W  K  L  K  L  M  P  R  H  D  T  N  *  L  L  L  V  W  S  I  F  N  K  M  S  S  S  Y  G  *  I  G  L  P  R  E  K  M  T  V  Q  F  V  L  D  Q  R  F  N  G  I  K  R  T  R  H  G  G  K  L  S  C  L  I  I  W  C  V  L  Y  Y  K  L  Q  R  N  T  K  T  Q  T  K  K  T  K  N  R  L  L  Y  L  I  L  T  *  G  S  Y  C  V  Q  H  I  G  E  S  *  F  Y  F  K  E  S  P  P  N  Y  V  K  R  *  I  R  T  S  I  L  L  N  Y  *  L  Y  M  I  L  R  K  G </first_frame>
            <second_frame>  S  R  S  E  D  I  N  P  Q  C  L  V  Y  S  P  F  L  S  R :   F  G  Q  A  L  L  W  K  T  Q  P  Q  R  D  T  G  D  H  P  Y  P  T  N  *  K  R :   I  F  E  L  G  G  F  G  E  I  M  A  S  H  A  R  E  H  G  V  S  T  Q  L  M  S  E  L  W  L  R  V  C  F  W  Y  L  S  Y  G  R  S  S  C  C  R  S  L  R  R  *  S  *  L  Q  S  T  E  Q  T  V  F  G  T  L  F  P  L  S  I  G  S  *  S  *  C  L  A  T  I  L  I  S  F  F  L  F  G  Q  F  L  T  R  *  A  R  A  T  V  K  *  D  Y  Q  E  R  K  *  Q  F  N  L  F  *  T  K  D  S  T  A  *  R  E  P  D  M  V  E  S  Y  H  V  *  L  S  G  V  Y  S  I  T  N  F  R  G  T  Q  K  H  K  L  R  K  Q  R  T  D  C  Y  T  S  F  *  L  E  V  R  T  V  Y  N  I  L  V  N  L  D  S  I  L  K  N  R  H  L  I  M  L  K  G  E  L  G  H  L  F  Y  *  I  T  N  F  I  *  F  Y  V  R   </second_frame>
            <third_frame>   V  E  V  R  T  *  I  L  S  V  W  C  T  P  L  F  C  L   : D  S  G  R  R  C  F  G  K  L  N  H  K  G  I  L  G  T  I  H  I  P  Q  I  E  K   : E  S  S  S  L  V  A  L  V  R  L  W  P  A  M  Q  E  S  T  V  C  Q  H  S  *  C  L  S  C  G  Y  E  S  A  F  G  I  S  V  M  E  D  Q  V  V  V  G  P  *  E  G  E  V  N  Y  S  Q  Q  N  K  L  S  L  G  L  F  S  P  *  A  L  E  A  E  A  N  A  S  P  R  Y  *  L  A  S  S  C  L  V  N  F  *  Q  D  E  L  E  L  R  L  N  R  T  T  K  R  E  N  D  S  S  I  C  F  R  P  K  I  Q  R  H  K  E  N  Q  T  W  W  K  V  I  M  F  D  Y  L  V  C  T  L  L  Q  T  S  E  E  H  K  N  T  N  *  E  N  K  E  Q  I  V  I  P  H  F  N  L  R  F  V  L  C  T  T  Y  W  *  I  L  I  L  F  *  R  I  A  T  *  L  C  *  K  V  N  *  D  I  Y  F  T  K  L  L  T  L  Y  D  S  T  *  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0307J13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22408" stop="22214"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGLPREKMTVQFVLDQRFNGIKRTRHGGKLSCLIIWCVLYYKLQRNTKTQTKKTKNRLLYLILT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="25502" PGL_stop="24640"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25502" e_stop="24917"/>
            <exon e_start="24821" e_stop="24640"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.427" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25502" e_stop="24917" e_length="586"/>
          </exon>
          <intron i_serial="1" don_prob="0.427" acc_prob="0.992">
            <gDNA_intron_boundary i_start="24916" i_stop="24822" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="24821" e_stop="24640" e_length="182"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25502" stop="24917"/>
              <exon start="24821" stop="24640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25502" stop="25012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306235" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGTGGAATGCTGACTTTGAGGGGTCAAATAGATACAAAACATCATACTTCTCTCATCGTCGGTCAGTTCAGACACCTCAGTATGGAAGCATGGAAAATGATCCATCAATCTCGCAACTTTGTGTGGATGGACGATACAGTGTTTGTGATCGTGTAATTTTTGGACATAGGTTTAGTGATTTTGATCCTAATAGGGAGCGGAAGCCAAGTGACTTTTCATCTTCTCGCAGACCAAGTGACTATACCTCTTTTCATAGGCCAAGTGATTATTCATCTGGTCATAGGCCTAGTGACTATTCCTGCGGACAAAGGCCAAGTGATGTCTCCAGATGGGGCTCATCAGATGATGAGTATGGACCTGGAGATTCACCTACCGATTCGTTTTCACCTGTAACGAATAGAGGGTATGCTCCTGCGGAAGATGGTTATAGAATGCCCCGAAATTCAACCTACTGTTTAGCAGCAAGTAAACAAATGGTTGGTATTTTTCTCACCGTATGGGTGCGGGGTGATTTGAGGGAACATGTTCGGAATCTGAAAGTATCATGTGTTGGCAGAGGGTTGATGGGGTACCTTAGGAATAAG : GGATCTATTTCAATGAGTATGCAGTTGCATCAAACAAGCTTTTGCTTTGTCTGCACTCACTTAACCTCTGGTCAGAAAGAGGGTGATGAGTTGCGCAGAAATTCTGATGTCATGGAGATCCTAAAGAAGACAAGATTTCCGCAAGTTAGTCGTGTGGATGAAGAGAAGTCACCAGAAACTAT</gDNA_template>
            <first_frame> R  V  E  C  *  L  *  G  V  K  *  I  Q  N  I  I  L  L  S  S  S  V  S  S  D  T  S  V  W  K  H  G  K  *  S  I  N  L  A  T  L  C  G  W  T  I  Q  C  L  *  S  C  N  F  W  T  *  V  *  *  F  *  S  *  *  G  A  E  A  K  *  L  F  I  F  S  Q  T  K  *  L  Y  L  F  S  *  A  K  *  L  F  I  W  S  *  A  *  *  L  F  L  R  T  K  A  K  *  C  L  Q  M  G  L  I  R  *  *  V  W  T  W  R  F  T  Y  R  F  V  F  T  C  N  E  *  R  V  C  S  C  G  R  W  L  *  N  A  P  K  F  N  L  L  F  S  S  K  *  T  N  G  W  Y  F  S  H  R  M  G  A  G  *  F  E  G  T  C  S  E  S  E  S  I  M  C  W  Q  R  V  D  G  V  P  *  E  *   : G  I  Y  F  N  E  Y  A  V  A  S  N  K  L  L  L  C  L  H  S  L  N  L  W  S  E  R  G  *  *  V  A  Q  K  F  *  C  H  G  D  P  K  E  D  K  I  S  A  S  *  S  C  G  *  R  E  V  T  R  N  Y </first_frame>
            <second_frame>  E  W  N  A  D  F  E  G  S  N  R  Y  K  T  S  Y  F  S  H  R  R  S  V  Q  T  P  Q  Y  G  S  M  E  N  D  P  S  I  S  Q  L  C  V  D  G  R  Y  S  V  C  D  R  V  I  F  G  H  R  F  S  D  F  D  P  N  R  E  R  K  P  S  D  F  S  S  S  R  R  P  S  D  Y  T  S  F  H  R  P  S  D  Y  S  S  G  H  R  P  S  D  Y  S  C  G  Q  R  P  S  D  V  S  R  W  G  S  S  D  D  E  Y  G  P  G  D  S  P  T  D  S  F  S  P  V  T  N  R  G  Y  A  P  A  E  D  G  Y  R  M  P  R  N  S  T  Y  C  L  A  A  S  K  Q  M  V  G  I  F  L  T  V  W  V  R  G  D  L  R  E  H  V  R  N  L  K  V  S  C  V  G  R  G  L  M  G  Y  L  R  N  K  :  G  S  I  S  M  S  M  Q  L  H  Q  T  S  F  C  F  V  C  T  H  L  T  S  G  Q  K  E  G  D  E  L  R  R  N  S  D  V  M  E  I  L  K  K  T  R  F  P  Q  V  S  R  V  D  E  E  K  S  P  E  T   </second_frame>
            <third_frame>   S  G  M  L  T  L  R  G  Q  I  D  T  K  H  H  T  S  L  I  V  G  Q  F  R  H  L  S  M  E  A  W  K  M  I  H  Q  S  R  N  F  V  W  M  D  D  T  V  F  V  I  V  *  F  L  D  I  G  L  V  I  L  I  L  I  G  S  G  S  Q  V  T  F  H  L  L  A  D  Q  V  T  I  P  L  F  I  G  Q  V  I  I  H  L  V  I  G  L  V  T  I  P  A  D  K  G  Q  V  M  S  P  D  G  A  H  Q  M  M  S  M  D  L  E  I  H  L  P  I  R  F  H  L  *  R  I  E  G  M  L  L  R  K  M  V  I  E  C  P  E  I  Q  P  T  V  *  Q  Q  V  N  K  W  L  V  F  F  S  P  Y  G  C  G  V  I  *  G  N  M  F  G  I  *  K  Y  H  V  L  A  E  G  *  W  G  T  L  G  I  R :   D  L  F  Q  *  V  C  S  C  I  K  Q  A  F  A  L  S  A  L  T  *  P  L  V  R  K  R  V  M  S  C  A  E  I  L  M  S  W  R  S  *  R  R  Q  D  F  R  K  L  V  V  W  M  K  R  S  H  Q  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0307J13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25501" stop="24917"/>
                    <exon start="24821" stop="24642"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EWNADFEGSNRYKTSYFSHRRSVQTPQYGSMENDPSISQLCVDGRYSVCDRVIFGHRFSDFDPNRERKPSDFSSSRRPSDYTSFHRPSDYSSGHRPSDYSCGQRPSDVSRWGSSDDEYGPGDSPTDSFSPVTNRGYAPAEDGYRMPRNSTYCLAASKQMVGIFLTVWVRGDLREHVRNLKVSCVGRGLMGYLRNKGSISMSMQLHQTSFCFVCTHLTSGQKEGDELRRNSDVMEILKKTRFPQVSRVDEEKSPET</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="27257" PGL_stop="25791"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27257" e_stop="27163"/>
            <exon e_start="27046" e_stop="26968"/>
            <exon e_start="26258" e_stop="26193"/>
            <exon e_start="26079" e_stop="25995"/>
            <exon e_start="25893" e_stop="25791"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.578" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.970" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27257" e_stop="27163" e_length="95"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.938">
            <gDNA_intron_boundary i_start="27162" i_stop="27047" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27046" e_stop="26968" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.994">
            <gDNA_intron_boundary i_start="26967" i_stop="26259" i_length="709"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26258" e_stop="26193" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.578">
            <gDNA_intron_boundary i_start="26192" i_stop="26080" i_length="113"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26079" e_stop="25995" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.970">
            <gDNA_intron_boundary i_start="25994" i_stop="25894" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25893" e_stop="25791" e_length="103"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27257" stop="27163"/>
              <exon start="27046" stop="26968"/>
              <exon start="26258" stop="26193"/>
              <exon start="26079" stop="25995"/>
              <exon start="25893" stop="25791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327177" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAGATTTTGATTTTATTGAGTGATTCTGAATATATAATTCAGAATTTGAAAGAAGAGTGATGCAATGAGGGATGAGTATTCAAAGAGAAGCAAG : CTGTCTTGGTCCAGAAAATTGGTTAGGAAATGGTTCAGTTCAAAGGGAAAAGCTGTAGAATTTGAATCTGTTTATGGAG : GAAGTTATGAGCGGAGAACAAGCATCTTGGAGTGGGAACATTGCGCAATCAAGAAGACCAAAACAG : AGAAATCAACCAGGTGTATGGAGCATCTCCCACGGGGGAGTGTTAGTCTTGATCGCCCTAAGATTATAAATGTACAAGATTATAG : ACTCTTTGTGTCTACATGGAATGTGGGTGGAGAATCGCCGCTAAGCAATTTGAATCTAGATGAATGGCTTCATTCTTCACCCCCTGCAGATATCTATGTGCTT</gDNA_template>
            <first_frame> P  D  F  D  F  I  E  *  F  *  I  Y  N  S  E  F  E  R  R  V  M  Q  *  G  M  S  I  Q  R  E  A  S :   C  L  G  P  E  N  W  L  G  N  G  S  V  Q  R  E  K  L  *  N  L  N  L  F  M  E  :  E  V  M  S  G  E  Q  A  S  W  S  G  N  I  A  Q  S  R  R  P  K  Q  :  R  N  Q  P  G  V  W  S  I  S  H  G  G  V  L  V  L  I  A  L  R  L  *  M  Y  K  I  I   : D  S  L  C  L  H  G  M  W  V  E  N  R  R  *  A  I  *  I  *  M  N  G  F  I  L  H  P  L  Q  I  S  M  C   </first_frame>
            <second_frame>  Q  I  L  I  L  L  S  D  S  E  Y  I  I  Q  N  L  K  E  E  *  C  N  E  G  *  V  F  K  E  K  Q   : A  V  L  V  Q  K  I  G  *  E  M  V  Q  F  K  G  K  S  C  R  I  *  I  C  L  W  R :   K  L  *  A  E  N  K  H  L  G  V  G  T  L  R  N  Q  E  D  Q  N  R :   E  I  N  Q  V  Y  G  A  S  P  T  G  E  C  *  S  *  S  P  *  D  Y  K  C  T  R  L  *  :  T  L  C  V  Y  M  E  C  G  W  R  I  A  A  K  Q  F  E  S  R  *  M  A  S  F  F  T  P  C  R  Y  L  C  A  </second_frame>
            <third_frame>   R  F  *  F  Y  *  V  I  L  N  I  *  F  R  I  *  K  K  S  D  A  M  R  D  E  Y  S  K  R  S  K  :  L  S  W  S  R  K  L  V  R  K  W  F  S  S  K  G  K  A  V  E  F  E  S  V  Y  G   : G  S  Y  E  R  R  T  S  I  L  E  W  E  H  C  A  I  K  K  T  K  T   : E  K  S  T  R  C  M  E  H  L  P  R  G  S  V  S  L  D  R  P  K  I  I  N  V  Q  D  Y  R :   L  F  V  S  T  W  N  V  G  G  E  S  P  L  S  N  L  N  L  D  E  W  L  H  S  S  P  P  A  D  I  Y  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0307J13.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27207" stop="27163"/>
                    <exon start="27046" stop="26968"/>
                    <exon start="26258" stop="26193"/>
                    <exon start="26079" stop="25995"/>
                    <exon start="25893" stop="25791"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKSDAMRDEYSKRSKLSWSRKLVRKWFSSKGKAVEFESVYGGSYERRTSILEWEHCAIKKTKTEKSTRCMEHLPRGSVSLDRPKIINVQDYRLFVSTWNVGGESPLSNLNLDEWLHSSPPADIYVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="37652" PGL_stop="37350"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37652" e_stop="37350"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="37652" e_stop="37350" e_length="303"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37652" stop="37350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547383" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTGCTGTGTTGTTCATCGTTATGGTGACAATGTTTGCATCTTCAAATGTAAATGTTGTTGAGGCACAACAAGAACTTGCATATAAAGAGTGCTATGAAAATGGCATGAAACTTGGTGCGACCGAAGAAAGTGTCAAAAGAGAATGCAGAAATATCGTTAGGGACCATGATATTAAAACCTAAAACACATTAAAGAAGTGATATTTTTCACTTCTTTATCTTTTTTGGCTATGATTTTTTCATTGGCTTTAATATATGTTGTTTGACAACCCAAAAAAATAAATATGTAACATAAAGAATAA</gDNA_template>
            <first_frame> H  C  C  V  V  H  R  Y  G  D  N  V  C  I  F  K  C  K  C  C  *  G  T  T  R  T  C  I  *  R  V  L  *  K  W  H  E  T  W  C  D  R  R  K  C  Q  K  R  M  Q  K  Y  R  *  G  P  *  Y  *  N  L  K  H  I  K  E  V  I  F  F  T  S  L  S  F  L  A  M  I  F  S  L  A  L  I  Y  V  V  *  Q  P  K  K  I  N  M  *  H  K  E  * </first_frame>
            <second_frame>  I  A  V  L  F  I  V  M  V  T  M  F  A  S  S  N  V  N  V  V  E  A  Q  Q  E  L  A  Y  K  E  C  Y  E  N  G  M  K  L  G  A  T  E  E  S  V  K  R  E  C  R  N  I  V  R  D  H  D  I  K  T  *  N  T  L  K  K  *  Y  F  S  L  L  Y  L  F  W  L  *  F  F  H  W  L  *  Y  M  L  F  D  N  P  K  K  *  I  C  N  I  K  N   </second_frame>
            <third_frame>   L  L  C  C  S  S  L  W  *  Q  C  L  H  L  Q  M  *  M  L  L  R  H  N  K  N  L  H  I  K  S  A  M  K  M  A  *  N  L  V  R  P  K  K  V  S  K  E  N  A  E  I  S  L  G  T  M  I  L  K  P  K  T  H  *  R  S  D  I  F  H  F  F  I  F  F  G  Y  D  F  F  I  G  F  N  I  C  C  L  T  T  Q  K  N  K  Y  V  T  *  R  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0307J13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="39142" PGL_stop="40620"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39142" e_stop="39442"/>
            <exon e_start="39763" e_stop="40620"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.966" e_score="0.997"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="39142" e_stop="39442" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.966">
            <gDNA_intron_boundary i_start="39443" i_stop="39762" i_length="320"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="39763" e_stop="40620" e_length="858"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39142" stop="39442"/>
              <exon start="39763" stop="40620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39193" stop="39442"/>
              <exon start="39763" stop="40197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39194" stop="39442"/>
              <exon start="39763" stop="40015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39763" stop="40553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40346" stop="40587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40346" stop="40587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40346" stop="40587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40346" stop="40587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40347" stop="40587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGATGTGTAAATCAACAGAGTAAAAGAAGAACCATCAAAAATGGTGATAACTAGTACTTCCTCTGTTACTTGTTCTACTGTTTTTGATATTGGAAATTACAAGACTAAGCTATTGAAAATCGAGCCACAAACATGTAGCAAACACAATTCTCCTCCAAAATCTCTGTTAATTGGGACCCCATCAGAAGCAGGAAACTTCCCAGTATTGATATTTCTCCATGGCTATCTTCTTTACAATTCTTTCTATTCACAACTTATTCAACATCTCTCTTCTCATGGCTTCATTGTTGTTGCTCCTCAG : TTATATTTAGTGGAAGGAGCAGATGCAACCGAGGATATCAAATCGACAGCTGAAGTCACCCATTGGTTATCTGAAGGATTGCAGCATCACCTTCCACCTGATGTTGAGCCAAACTTGACGAAACTTGGACTAGCAGGCCATAGCCGTGGGGGAAAAGTTGCATTTTCGCTAGCTCTTGGTAGACTTGCTAGTGACCTGAAATTTTCAGCGTTGATCGGTGTTGATCCTGTGGATGGAATGGAGAAAGGAAAGCAAACTCCGCCATCAGTTCTCACCTACGTTCCGCGTTCCTTCATTAATCTTGATATGCCTGTGATGGTAATTGGCTCGGGTTTGGGAGAAGTTAAAAAGAATCCTCTGTTCCCTGCTTGTGCTCCTAAAGGGGTGAATCATCGCGATTTCTACAACGAATGTTGCAAGCCAGCTTGTTACTTTGTTGCAAAGGATTATGGACATAATGATATGTTAGATGAGGAGACCAAAGGGATTCGAGGCAAGGCTACTTATTGTTTGTGCAAGAAAGGGAAATCTAGAGAGCCCATGAGGAGATTTGTTGGAGGGGTTTTGGTTGCATTTTTGGAAGCTTATTTGGAAGGTAATTCCAGCCACTTGATAGCTATTAGAGATGGCCATGTTGCACTGCCTGTAGAGCTCCAAGATATTGATTTTCTTGTCTAAGCTATGGTTGTGGTTATATTGTACCCTTCGCTAGCATGTATCCAAACCATAGCCGTATATGTGTCTATTTATTCAATTTAAATATTTACTTGTGCACAGCTAAAATTGAAGTGCATAGAGGCCAAATTAAAATCATAGAATCGATACTATTAAGAGCTCAGTTGCAAAGACTCCTCCAAT</gDNA_template>
            <first_frame> R  C  V  N  Q  Q  S  K  R  R  T  I  K  N  G  D  N  *  Y  F  L  C  Y  L  F  Y  C  F  *  Y  W  K  L  Q  D  *  A  I  E  N  R  A  T  N  M  *  Q  T  Q  F  S  S  K  I  S  V  N  W  D  P  I  R  S  R  K  L  P  S  I  D  I  S  P  W  L  S  S  L  Q  F  F  L  F  T  T  Y  S  T  S  L  F  S  W  L  H  C  C  C  S  S   : V  I  F  S  G  R  S  R  C  N  R  G  Y  Q  I  D  S  *  S  H  P  L  V  I  *  R  I  A  A  S  P  S  T  *  C  *  A  K  L  D  E  T  W  T  S  R  P  *  P  W  G  K  S  C  I  F  A  S  S  W  *  T  C  *  *  P  E  I  F  S  V  D  R  C  *  S  C  G  W  N  G  E  R  K  A  N  S  A  I  S  S  H  L  R  S  A  F  L  H  *  S  *  Y  A  C  D  G  N  W  L  G  F  G  R  S  *  K  E  S  S  V  P  C  L  C  S  *  R  G  E  S  S  R  F  L  Q  R  M  L  Q  A  S  L  L  L  C  C  K  G  L  W  T  *  *  Y  V  R  *  G  D  Q  R  D  S  R  Q  G  Y  L  L  F  V  Q  E  R  E  I  *  R  A  H  E  E  I  C  W  R  G  F  G  C  I  F  G  S  L  F  G  R  *  F  Q  P  L  D  S  Y  *  R  W  P  C  C  T  A  C  R  A  P  R  Y  *  F  S  C  L  S  Y  G  C  G  Y  I  V  P  F  A  S  M  Y  P  N  H  S  R  I  C  V  Y  L  F  N  L  N  I  Y  L  C  T  A  K  I  E  V  H  R  G  Q  I  K  I  I  E  S  I  L  L  R  A  Q  L  Q  R  L  L  Q  </first_frame>
            <second_frame>  D  V  *  I  N  R  V  K  E  E  P  S  K  M  V  I  T  S  T  S  S  V  T  C  S  T  V  F  D  I  G  N  Y  K  T  K  L  L  K  I  E  P  Q  T  C  S  K  H  N  S  P  P  K  S  L  L  I  G  T  P  S  E  A  G  N  F  P  V  L  I  F  L  H  G  Y  L  L  Y  N  S  F  Y  S  Q  L  I  Q  H  L  S  S  H  G  F  I  V  V  A  P  Q  :  L  Y  L  V  E  G  A  D  A  T  E  D  I  K  S  T  A  E  V  T  H  W  L  S  E  G  L  Q  H  H  L  P  P  D  V  E  P  N  L  T  K  L  G  L  A  G  H  S  R  G  G  K  V  A  F  S  L  A  L  G  R  L  A  S  D  L  K  F  S  A  L  I  G  V  D  P  V  D  G  M  E  K  G  K  Q  T  P  P  S  V  L  T  Y  V  P  R  S  F  I  N  L  D  M  P  V  M  V  I  G  S  G  L  G  E  V  K  K  N  P  L  F  P  A  C  A  P  K  G  V  N  H  R  D  F  Y  N  E  C  C  K  P  A  C  Y  F  V  A  K  D  Y  G  H  N  D  M  L  D  E  E  T  K  G  I  R  G  K  A  T  Y  C  L  C  K  K  G  K  S  R  E  P  M  R  R  F  V  G  G  V  L  V  A  F  L  E  A  Y  L  E  G  N  S  S  H  L  I  A  I  R  D  G  H  V  A  L  P  V  E  L  Q  D  I  D  F  L  V  *  A  M  V  V  V  I  L  Y  P  S  L  A  C  I  Q  T  I  A  V  Y  V  S  I  Y  S  I  *  I  F  T  C  A  Q  L  K  L  K  C  I  E  A  K  L  K  S  *  N  R  Y  Y  *  E  L  S  C  K  D  S  S  N </second_frame>
            <third_frame>   M  C  K  S  T  E  *  K  K  N  H  Q  K  W  *  *  L  V  L  P  L  L  L  V  L  L  F  L  I  L  E  I  T  R  L  S  Y  *  K  S  S  H  K  H  V  A  N  T  I  L  L  Q  N  L  C  *  L  G  P  H  Q  K  Q  E  T  S  Q  Y  *  Y  F  S  M  A  I  F  F  T  I  L  S  I  H  N  L  F  N  I  S  L  L  M  A  S  L  L  L  L  L  S :   Y  I  *  W  K  E  Q  M  Q  P  R  I  S  N  R  Q  L  K  S  P  I  G  Y  L  K  D  C  S  I  T  F  H  L  M  L  S  Q  T  *  R  N  L  D  *  Q  A  I  A  V  G  E  K  L  H  F  R  *  L  L  V  D  L  L  V  T  *  N  F  Q  R  *  S  V  L  I  L  W  M  E  W  R  K  E  S  K  L  R  H  Q  F  S  P  T  F  R  V  P  S  L  I  L  I  C  L  *  W  *  L  A  R  V  W  E  K  L  K  R  I  L  C  S  L  L  V  L  L  K  G  *  I  I  A  I  S  T  T  N  V  A  S  Q  L  V  T  L  L  Q  R  I  M  D  I  M  I  C  *  M  R  R  P  K  G  F  E  A  R  L  L  I  V  C  A  R  K  G  N  L  E  S  P  *  G  D  L  L  E  G  F  W  L  H  F  W  K  L  I  W  K  V  I  P  A  T  *  *  L  L  E  M  A  M  L  H  C  L  *  S  S  K  I  L  I  F  L  S  K  L  W  L  W  L  Y  C  T  L  R  *  H  V  S  K  P  *  P  Y  M  C  L  F  I  Q  F  K  Y  L  L  V  H  S  *  N  *  S  A  *  R  P  N  *  N  H  R  I  D  T  I  K  S  S  V  A  K  T  P  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0307J13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39152" stop="39442"/>
                    <exon start="39763" stop="40440"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INRVKEEPSKMVITSTSSVTCSTVFDIGNYKTKLLKIEPQTCSKHNSPPKSLLIGTPSEAGNFPVLIFLHGYLLYNSFYSQLIQHLSSHGFIVVAPQLYLVEGADATEDIKSTAEVTHWLSEGLQHHLPPDVEPNLTKLGLAGHSRGGKVAFSLALGRLASDLKFSALIGVDPVDGMEKGKQTPPSVLTYVPRSFINLDMPVMVIGSGLGEVKKNPLFPACAPKGVNHRDFYNECCKPACYFVAKDYGHNDMLDEETKGIRGKATYCLCKKGKSREPMRRFVGGVLVAFLEAYLEGNSSHLIAIRDGHVALPVELQDIDFLV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0307J13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40428" stop="40619"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSCLSYGCGYIVPFASMYPNHSRICVYLFNLNIYLCTAKIEVHRGQIKIIESILLRAQLQRLLQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="47171" PGL_stop="44134"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47171" e_stop="47123"/>
            <exon e_start="47040" e_stop="46872"/>
            <exon e_start="46776" e_stop="46684"/>
            <exon e_start="44454" e_stop="44134"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.565" e_score="0.939"/>
          <exon-intron don_prob="0.989" acc_prob="0.961" e_score="0.970"/>
          <exon-intron don_prob="0.955" acc_prob="0.932" e_score="0.978"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="47171" e_stop="47123" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.565">
            <gDNA_intron_boundary i_start="47122" i_stop="47041" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="47040" e_stop="46872" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.961">
            <gDNA_intron_boundary i_start="46871" i_stop="46777" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="46776" e_stop="46684" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.955" acc_prob="0.932">
            <gDNA_intron_boundary i_start="46683" i_stop="44455" i_length="2229"/>
          </intron>
          <exon e_serial="4" e_score="0.941">
            <gDNA_exon_boundary e_start="44454" e_stop="44134" e_length="321"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47171" stop="47123"/>
              <exon start="47040" stop="46872"/>
              <exon start="46776" stop="46684"/>
              <exon start="44454" stop="44134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598607" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTATTTCAGACAACACCACAGTCAGGTTCTGCTACGTTTTTCTTCAT : AACCAATAAACTTGGTTTCACTCCAGAATTTTTAGGCCGCCTTAAGCTTGTTACTTCAGTTGCATCACTTATTGGTGTTGCACTTTACAATGGTTTCTTAAAGAAAGTTCCTTTAAGGAAAATATTCCTTGTGACAACTATTATTGGTTCAGCTCTTGGGATGACACAG : GTTCTGCTGGTAACTGGATTAAACCGAAAGTTTGGCATTAGTGATGAGTGGTTTTCAATTGGGGATTCCTTGATTCTATCTGTTCTTGGTCAG : GCTTTCTTCATGCCTGTTCTTGTATTAGCTGCAAGAATATGTCCAATGGGAATGGAGGCTACTTTCTTTGCAACCCTTATGTCCATAGCCAATGGGGGAGGTACCCTTGGGGGCCTACTTGGTGCAGGTCTAACTCACATCCTTGGTGTCACCAAGGACAAATTTGATAACTTGGCTATCCTAATAACTATCTGCAATCTCAGCTCCCTACTGCCTTTACCACTACTTGGCCTTCTTCCTCGAGATGAACCCGATTCAGAGGAGAATACTGATATTGAGATGACGCCATATTGAATTCATTCTTTCTCTGCATATAACATG</gDNA_template>
            <first_frame> S  Y  F  R  Q  H  H  S  Q  V  L  L  R  F  S  S   : *  P  I  N  L  V  S  L  Q  N  F  *  A  A  L  S  L  L  L  Q  L  H  H  L  L  V  L  H  F  T  M  V  S  *  R  K  F  L  *  G  K  Y  S  L  *  Q  L  L  L  V  Q  L  L  G  *  H  R :   F  C  W  *  L  D  *  T  E  S  L  A  L  V  M  S  G  F  Q  L  G  I  P  *  F  Y  L  F  L  V  R :   L  S  S  C  L  F  L  Y  *  L  Q  E  Y  V  Q  W  E  W  R  L  L  S  L  Q  P  L  C  P  *  P  M  G  E  V  P  L  G  A  Y  L  V  Q  V  *  L  T  S  L  V  S  P  R  T  N  L  I  T  W  L  S  *  *  L  S  A  I  S  A  P  Y  C  L  Y  H  Y  L  A  F  F  L  E  M  N  P  I  Q  R  R  I  L  I  L  R  *  R  H  I  E  F  I  L  S  L  H  I  T   </first_frame>
            <second_frame>  P  I  S  D  N  T  T  V  R  F  C  Y  V  F  L  H  :  N  Q  *  T  W  F  H  S  R  I  F  R  P  P  *  A  C  Y  F  S  C  I  T  Y  W  C  C  T  L  Q  W  F  L  K  E  S  S  F  K  E  N  I  P  C  D  N  Y  Y  W  F  S  S  W  D  D  T   : G  S  A  G  N  W  I  K  P  K  V  W  H  *  *  *  V  V  F  N  W  G  F  L  D  S  I  C  S  W  S   : G  F  L  H  A  C  S  C  I  S  C  K  N  M  S  N  G  N  G  G  Y  F  L  C  N  P  Y  V  H  S  Q  W  G  R  Y  P  W  G  P  T  W  C  R  S  N  S  H  P  W  C  H  Q  G  Q  I  *  *  L  G  Y  P  N  N  Y  L  Q  S  Q  L  P  T  A  F  T  T  T  W  P  S  S  S  R  *  T  R  F  R  G  E  Y  *  Y  *  D  D  A  I  L  N  S  F  F  L  C  I  *  H  </second_frame>
            <third_frame>   L  F  Q  T  T  P  Q  S  G  S  A  T  F  F  F  I :   T  N  K  L  G  F  T  P  E  F  L  G  R  L  K  L  V  T  S  V  A  S  L  I  G  V  A  L  Y  N  G  F  L  K  K  V  P  L  R  K  I  F  L  V  T  T  I  I  G  S  A  L  G  M  T  Q  :  V  L  L  V  T  G  L  N  R  K  F  G  I  S  D  E  W  F  S  I  G  D  S  L  I  L  S  V  L  G  Q  :  A  F  F  M  P  V  L  V  L  A  A  R  I  C  P  M  G  M  E  A  T  F  F  A  T  L  M  S  I  A  N  G  G  G  T  L  G  G  L  L  G  A  G  L  T  H  I  L  G  V  T  K  D  K  F  D  N  L  A  I  L  I  T  I  C  N  L  S  S  L  L  P  L  P  L  L  G  L  L  P  R  D  E  P  D  S  E  E  N  T  D  I  E  M  T  P  Y  *  I  H  S  F  S  A  Y  N  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0307J13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47169" stop="47123"/>
                    <exon start="47040" stop="46872"/>
                    <exon start="46776" stop="46684"/>
                    <exon start="44454" stop="44161"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFQTTPQSGSATFFFITNKLGFTPEFLGRLKLVTSVASLIGVALYNGFLKKVPLRKIFLVTTIIGSALGMTQVLLVTGLNRKFGISDEWFSIGDSLILSVLGQAFFMPVLVLAARICPMGMEATFFATLMSIANGGGTLGGLLGAGLTHILGVTKDKFDNLAILITICNLSSLLPLPLLGLLPRDEPDSEENTDIEMTPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="78003" PGL_stop="79277"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78003" e_stop="78360"/>
            <exon e_start="78824" e_stop="78922"/>
            <exon e_start="79056" e_stop="79277"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="0.947"/>
          <exon-intron don_prob="0.520" acc_prob="0.997" e_score="0.939"/>
          <exon-only e_score="0.847"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="78003" e_stop="78360" e_length="358"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="78361" i_stop="78823" i_length="463"/>
          </intron>
          <exon e_serial="2" e_score="0.939">
            <gDNA_exon_boundary e_start="78824" e_stop="78922" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.520" acc_prob="0.997">
            <gDNA_intron_boundary i_start="78923" i_stop="79055" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="0.847">
            <gDNA_exon_boundary e_start="79056" e_stop="79277" e_length="222"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78003" stop="78360"/>
              <exon start="78824" stop="78922"/>
              <exon start="79056" stop="79277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573834" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATAACTATGTCAAAAATGGGATTGAATGTCAAAATTCGCACGACTTTAGTTGCAATATTAGTAATAGGGAATAACTACATGGTTTCAAGAGGAGCAATGGCTCAATCTAACTGCATGAATGCATTTTTAAGCATGTATTCATGTCTTAGCTATGTCACTGGATCAACACCAAGAACACCACCGTCGAGCTCTTGCTGCTCCGCCCTCTCAAGGGTGCTGCAATCGCAGCCAAGGTGTCTTTGCACCGTTGCTAATGGAGGTGGTTCGTCGTTAGGAATTCAAATTAATCAAACTCTTGCACTTGCATTACCTGCTGCATGCAACCTTAAAACTCCTCCTGTTAGTAGATGTTATG : ATGGTAATGAACCGGCAATGTCTCCAATCTCAAGGGTCTCTCTAGTAGGCTCGCCAGAGGGTTCATTTTCGGACGAGACTGCGGATCCTCCAATGCCAG : GGCTCGAGGAGAACTGGGAGTAGCAGTACGTTGCTGAGTTCTCATCTAGGAGTTCTAAAGAAGTTTGTTACATAAATTAGCAATACATTTTAATGTAATGTCATGTTATGATAATTATGTTGTGGGGTGATTTATATTAGTAATAATTACTTGTGTACTGTTCTCCTTCATTTCTGTACTGTCCTAGCAATGAACTCCAAAAGTTCGAATTTATTTGGCACT</gDNA_template>
            <first_frame> I  I  T  M  S  K  M  G  L  N  V  K  I  R  T  T  L  V  A  I  L  V  I  G  N  N  Y  M  V  S  R  G  A  M  A  Q  S  N  C  M  N  A  F  L  S  M  Y  S  C  L  S  Y  V  T  G  S  T  P  R  T  P  P  S  S  S  C  C  S  A  L  S  R  V  L  Q  S  Q  P  R  C  L  C  T  V  A  N  G  G  G  S  S  L  G  I  Q  I  N  Q  T  L  A  L  A  L  P  A  A  C  N  L  K  T  P  P  V  S  R  C  Y   : D  G  N  E  P  A  M  S  P  I  S  R  V  S  L  V  G  S  P  E  G  S  F  S  D  E  T  A  D  P  P  M  P   : G  L  E  E  N  W  E  *  Q  Y  V  A  E  F  S  S  R  S  S  K  E  V  C  Y  I  N  *  Q  Y  I  L  M  *  C  H  V  M  I  I  M  L  W  G  D  L  Y  *  *  *  L  L  V  Y  C  S  P  S  F  L  Y  C  P  S  N  E  L  Q  K  F  E  F  I  W  H  </first_frame>
            <second_frame>  L  *  L  C  Q  K  W  D  *  M  S  K  F  A  R  L  *  L  Q  Y  *  *  *  G  I  T  T  W  F  Q  E  E  Q  W  L  N  L  T  A  *  M  H  F  *  A  C  I  H  V  L  A  M  S  L  D  Q  H  Q  E  H  H  R  R  A  L  A  A  P  P  S  Q  G  C  C  N  R  S  Q  G  V  F  A  P  L  L  M  E  V  V  R  R  *  E  F  K  L  I  K  L  L  H  L  H  Y  L  L  H  A  T  L  K  L  L  L  L  V  D  V  M  :  M  V  M  N  R  Q  C  L  Q  S  Q  G  S  L  *  *  A  R  Q  R  V  H  F  R  T  R  L  R  I  L  Q  C  Q  :  G  S  R  R  T  G  S  S  S  T  L  L  S  S  H  L  G  V  L  K  K  F  V  T  *  I  S  N  T  F  *  C  N  V  M  L  *  *  L  C  C  G  V  I  Y  I  S  N  N  Y  L  C  T  V  L  L  H  F  C  T  V  L  A  M  N  S  K  S  S  N  L  F  G  T </second_frame>
            <third_frame>   Y  N  Y  V  K  N  G  I  E  C  Q  N  S  H  D  F  S  C  N  I  S  N  R  E  *  L  H  G  F  K  R  S  N  G  S  I  *  L  H  E  C  I  F  K  H  V  F  M  S  *  L  C  H  W  I  N  T  K  N  T  T  V  E  L  L  L  L  R  P  L  K  G  A  A  I  A  A  K  V  S  L  H  R  C  *  W  R  W  F  V  V  R  N  S  N  *  S  N  S  C  T  C  I  T  C  C  M  Q  P  *  N  S  S  C  *  *  M  L  * :   W  *  *  T  G  N  V  S  N  L  K  G  L  S  S  R  L  A  R  G  F  I  F  G  R  D  C  G  S  S  N  A  R :   A  R  G  E  L  G  V  A  V  R  C  *  V  L  I  *  E  F  *  R  S  L  L  H  K  L  A  I  H  F  N  V  M  S  C  Y  D  N  Y  V  V  G  *  F  I  L  V  I  I  T  C  V  L  F  S  F  I  S  V  L  S  *  Q  *  T  P  K  V  R  I  Y  L  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0307J13.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78003" stop="78360"/>
                    <exon start="78824" stop="78922"/>
                    <exon start="79056" stop="79078"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IITMSKMGLNVKIRTTLVAILVIGNNYMVSRGAMAQSNCMNAFLSMYSCLSYVTGSTPRTPPSSSCCSALSRVLQSQPRCLCTVANGGGSSLGIQINQTLALALPAACNLKTPPVSRCYDGNEPAMSPISRVSLVGSPEGSFSDETADPPMPGLEENWE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="79809" PGL_stop="80570"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79809" e_stop="80188"/>
            <exon e_start="80275" e_stop="80570"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.965" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79809" e_stop="80188" e_length="380"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.965">
            <gDNA_intron_boundary i_start="80189" i_stop="80274" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="80275" e_stop="80570" e_length="296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79809" stop="80188"/>
              <exon start="80275" stop="80492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79816" stop="80188"/>
              <exon start="80275" stop="80453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79826" stop="80188"/>
              <exon start="80275" stop="80570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79829" stop="80188"/>
              <exon start="80275" stop="80456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79852" stop="80188"/>
              <exon start="80275" stop="80450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335474" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAAACTTTACTATCAGAATCTCTTTTTCTTTCTCCTCATTTCACTGGGATTGATTTTTACAAAAAGATGGCTGATCATAGGTACGAAATGAGTCTTGCCTTGATTGTGTTCGCGGTGATCTGGACTGGAGTAATTGCTCAAGAAAGCGATGACTGCACAAACGTGTGGGTCAGCATGTCACCTTGCCTGAACTACTACGCGGACAGCACCTCACCACAATTCTCAGGTTGCTGCACGCAGCTTAGCACGGTGGTTGATGAAAAGTCAGAGTGCTTGTGCCAGGTTCTCAAAGACCTTGGACTCAACATTAACCAGACTCGGTTATCGGCCCTCACTACCGCTTGCAAAGTTCAGACTCCACCTGCTAGCAACTGCAACG : GACGTGGATCTGCATCACAAGGAGGTCCCAATGATGCAACTTCAACCAATATGGCTGCTCCTTTTTCCTTTTTCTTTCTCTTGATTGCTTCTTATGCTTCAATAATCAACATCACCTAACAGTCCATTGTATTTTGACTAGCTAGTTTGCTCTGTCATGAAAATGTACTATTACTTTTCATAGCATTTGCTCATTTCAGCAGTCAGTTTTCCACCGAAGCCTGATTGGCCATTGTATCGTACTTCGTCAATCACTATTGCTAGTTTGCTCTGCATTCACATTCATGTTGTAAATTA</gDNA_template>
            <first_frame> P  N  F  T  I  R  I  S  F  S  F  S  S  F  H  W  D  *  F  L  Q  K  D  G  *  S  *  V  R  N  E  S  C  L  D  C  V  R  G  D  L  D  W  S  N  C  S  R  K  R  *  L  H  K  R  V  G  Q  H  V  T  L  P  E  L  L  R  G  Q  H  L  T  T  I  L  R  L  L  H  A  A  *  H  G  G  *  *  K  V  R  V  L  V  P  G  S  Q  R  P  W  T  Q  H  *  P  D  S  V  I  G  P  H  Y  R  L  Q  S  S  D  S  T  C  *  Q  L  Q  R :   T  W  I  C  I  T  R  R  S  Q  *  C  N  F  N  Q  Y  G  C  S  F  F  L  F  L  S  L  D  C  F  L  C  F  N  N  Q  H  H  L  T  V  H  C  I  L  T  S  *  F  A  L  S  *  K  C  T  I  T  F  H  S  I  C  S  F  Q  Q  S  V  F  H  R  S  L  I  G  H  C  I  V  L  R  Q  S  L  L  L  V  C  S  A  F  T  F  M  L  *  I  </first_frame>
            <second_frame>  Q  T  L  L  S  E  S  L  F  L  S  P  H  F  T  G  I  D  F  Y  K  K  M  A  D  H  R  Y  E  M  S  L  A  L  I  V  F  A  V  I  W  T  G  V  I  A  Q  E  S  D  D  C  T  N  V  W  V  S  M  S  P  C  L  N  Y  Y  A  D  S  T  S  P  Q  F  S  G  C  C  T  Q  L  S  T  V  V  D  E  K  S  E  C  L  C  Q  V  L  K  D  L  G  L  N  I  N  Q  T  R  L  S  A  L  T  T  A  C  K  V  Q  T  P  P  A  S  N  C  N   : G  R  G  S  A  S  Q  G  G  P  N  D  A  T  S  T  N  M  A  A  P  F  S  F  F  F  L  L  I  A  S  Y  A  S  I  I  N  I  T  *  Q  S  I  V  F  *  L  A  S  L  L  C  H  E  N  V  L  L  L  F  I  A  F  A  H  F  S  S  Q  F  S  T  E  A  *  L  A  I  V  S  Y  F  V  N  H  Y  C  *  F  A  L  H  S  H  S  C  C  K  L </second_frame>
            <third_frame>   K  L  Y  Y  Q  N  L  F  F  F  L  L  I  S  L  G  L  I  F  T  K  R  W  L  I  I  G  T  K  *  V  L  P  *  L  C  S  R  *  S  G  L  E  *  L  L  K  K  A  M  T  A  Q  T  C  G  S  A  C  H  L  A  *  T  T  T  R  T  A  P  H  H  N  S  Q  V  A  A  R  S  L  A  R  W  L  M  K  S  Q  S  A  C  A  R  F  S  K  T  L  D  S  T  L  T  R  L  G  Y  R  P  S  L  P  L  A  K  F  R  L  H  L  L  A  T  A  T  :  D  V  D  L  H  H  K  E  V  P  M  M  Q  L  Q  P  I  W  L  L  L  F  P  F  S  F  S  *  L  L  L  M  L  Q  *  S  T  S  P  N  S  P  L  Y  F  D  *  L  V  C  S  V  M  K  M  Y  Y  Y  F  S  *  H  L  L  I  S  A  V  S  F  P  P  K  P  D  W  P  L  Y  R  T  S  S  I  T  I  A  S  L  L  C  I  H  I  H  V  V  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0307J13.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79810" stop="80188"/>
                    <exon start="80275" stop="80393"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTLLSESLFLSPHFTGIDFYKKMADHRYEMSLALIVFAVIWTGVIAQESDDCTNVWVSMSPCLNYYADSTSPQFSGCCTQLSTVVDEKSECLCQVLKDLGLNINQTRLSALTTACKVQTPPASNCNGRGSASQGGPNDATSTNMAAPFSFFFLLIASYASIINIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="85169" PGL_stop="83418"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85169" e_stop="84068"/>
            <exon e_start="83879" e_stop="83797"/>
            <exon e_start="83662" e_stop="83418"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.758" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85169" e_stop="84068" e_length="1102"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.961">
            <gDNA_intron_boundary i_start="84067" i_stop="83880" i_length="188"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83879" e_stop="83797" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.758" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83796" i_stop="83663" i_length="134"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="83662" e_stop="83418" e_length="245"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85169" stop="84482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85117" stop="84314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85117" stop="84506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85113" stop="84068"/>
              <exon start="83879" stop="83797"/>
              <exon start="83662" stop="83418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85113" stop="84554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85112" stop="84458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85112" stop="84541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85101" stop="84408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85101" stop="84581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85063" stop="84429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85054" stop="84846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85050" stop="84474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85048" stop="84463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85040" stop="84554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85034" stop="84331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84741" stop="84068"/>
              <exon start="83879" stop="83872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84680" stop="84071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84502" stop="84068"/>
              <exon start="83879" stop="83797"/>
              <exon start="83662" stop="83422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418036" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84500" stop="84068"/>
              <exon start="83879" stop="83797"/>
              <exon start="83662" stop="83424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84442" stop="84068"/>
              <exon start="83879" stop="83797"/>
              <exon start="83662" stop="83433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590446" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84425" stop="84068"/>
              <exon start="83879" stop="83797"/>
              <exon start="83662" stop="83422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84424" stop="84068"/>
              <exon start="83879" stop="83797"/>
              <exon start="83662" stop="83558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84293" stop="84068"/>
              <exon start="83879" stop="83797"/>
              <exon start="83662" stop="83446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585640" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTCCATACAGTAGTCTCTATGAACTACTAGTCCAACATACTCTAATCCCCTTAATTTCAGTGACAATTTTCAATCCCTAATCGATCTTCCATGGACCCCCTCACACTCCTCCGTGAGTACACCATACGCAACGACCTCCACAAGATTGTTCGCATCGGCGACGACTACCGATTCGGCAATGACTACACTTTCCCTTGCACAATCGAAACCGCTTATCGCTCCAAACATGTTCAAGCTAATCGGTACACTCTCGAAACCCTAATCAACTTCATCACCAATCACCACCTTAAACACACTGAATACATTCAGCAATCTCGTTCTCTTCGTATTCCGGCGGTTACCCTACCTGACCGTAAACCCCTTCTCGATTATCTCACCGGAAAGACTGCATCTTCAGATTCTATTGAATTCCTCAAATTCCCTCAGTCGAATGATACTTCAGTTCCTGTTTCTGTTTCAGCTGGTGTTACGGGCAATGAGGAGAATGTGATGAGTGATGTTAGGGTTTTGGAAAATCAAAACCCTATTGAGCTGATTAAAGCTGCTGAGAAGCCTTTGAAGGATAGAGAGGCGATTTTGTTTTGTAAGAACCGGGATTTCTATAGTGTTTTTACGGCTGCGTTGCGTAGAGATGAGGAGCGGCACCGGGCGGAATCCTTGCAGAGAAAAGATGGGTTGGTTGCTAAGAATCGGATAGATAGGGGGTATGGAGGTGGTGATGAAATAGGATATGATGGAGGGCCCAAGGCGAAAATGCATTTGAAGGGGAGTAAGATAGGGGAGGGTGTTCCCATTATTTTGGTTCCCAGTGCCTTTTCGACTTTGATCACCATCTATAATGTGAAGGACTTTTTGGAGGATGGGGTGTTTATACCAACTGATGTGAAACTGAAGCAGATGAAGGGGTCAAAACCGGACTGTATAACAGTACAAAAGAAGTTTAGTAGGGATAGGGTAGTTACAGCATATGAGGTTAGAGATAAGCCTTCTGCCTTGAAGCCGGAAGATTGGGACCGTGTGGTGGCAGTTTTTGTGTTGGGGAAAGACTGGCAGTTCAAAGATTGGCCTTTTAAGGATCATGTTGAGACCTTTAACAGGG : TTGTAGGATTTTTTTTGCGTTTTGAGGATGACAGTGTGGAGTCAGCGAAGACCGTGAAGCAATGGAATGTCAAGATTATCTCG : ATTAGTAAGAACAAACGCCACCAGGACAGAGCTGCAGCACTTGAGGTGTGGGAGAAACTTGAAGAATTTATGCGGTCACGGTCTCATTGATTCATGCTGAGTCTCTAGGTAGACAACTTGCTACAAGTTGTATTTCCCTTTGTGACCGTCTTTTTGGTTGTAACAATTATTACCCTGATTTCTCATACTTGAGAATCTCTTTTTTTCTTAATAAAGTAAATATCTTCTCTAAATAGCATCTAAAG</gDNA_template>
            <first_frame> L  F  H  T  V  V  S  M  N  Y  *  S  N  I  L  *  S  P  *  F  Q  *  Q  F  S  I  P  N  R  S  S  M  D  P  L  T  L  L  R  E  Y  T  I  R  N  D  L  H  K  I  V  R  I  G  D  D  Y  R  F  G  N  D  Y  T  F  P  C  T  I  E  T  A  Y  R  S  K  H  V  Q  A  N  R  Y  T  L  E  T  L  I  N  F  I  T  N  H  H  L  K  H  T  E  Y  I  Q  Q  S  R  S  L  R  I  P  A  V  T  L  P  D  R  K  P  L  L  D  Y  L  T  G  K  T  A  S  S  D  S  I  E  F  L  K  F  P  Q  S  N  D  T  S  V  P  V  S  V  S  A  G  V  T  G  N  E  E  N  V  M  S  D  V  R  V  L  E  N  Q  N  P  I  E  L  I  K  A  A  E  K  P  L  K  D  R  E  A  I  L  F  C  K  N  R  D  F  Y  S  V  F  T  A  A  L  R  R  D  E  E  R  H  R  A  E  S  L  Q  R  K  D  G  L  V  A  K  N  R  I  D  R  G  Y  G  G  G  D  E  I  G  Y  D  G  G  P  K  A  K  M  H  L  K  G  S  K  I  G  E  G  V  P  I  I  L  V  P  S  A  F  S  T  L  I  T  I  Y  N  V  K  D  F  L  E  D  G  V  F  I  P  T  D  V  K  L  K  Q  M  K  G  S  K  P  D  C  I  T  V  Q  K  K  F  S  R  D  R  V  V  T  A  Y  E  V  R  D  K  P  S  A  L  K  P  E  D  W  D  R  V  V  A  V  F  V  L  G  K  D  W  Q  F  K  D  W  P  F  K  D  H  V  E  T  F  N  R   : V  V  G  F  F  L  R  F  E  D  D  S  V  E  S  A  K  T  V  K  Q  W  N  V  K  I  I  S  :  I  S  K  N  K  R  H  Q  D  R  A  A  A  L  E  V  W  E  K  L  E  E  F  M  R  S  R  S  H  *  F  M  L  S  L  *  V  D  N  L  L  Q  V  V  F  P  F  V  T  V  F  L  V  V  T  I  I  T  L  I  S  H  T  *  E  S  L  F  F  L  I  K  *  I  S  S  L  N  S  I  *   </first_frame>
            <second_frame>  C  S  I  Q  *  S  L  *  T  T  S  P  T  Y  S  N  P  L  N  F  S  D  N  F  Q  S  L  I  D  L  P  W  T  P  S  H  S  S  V  S  T  P  Y  A  T  T  S  T  R  L  F  A  S  A  T  T  T  D  S  A  M  T  T  L  S  L  A  Q  S  K  P  L  I  A  P  N  M  F  K  L  I  G  T  L  S  K  P  *  S  T  S  S  P  I  T  T  L  N  T  L  N  T  F  S  N  L  V  L  F  V  F  R  R  L  P  Y  L  T  V  N  P  F  S  I  I  S  P  E  R  L  H  L  Q  I  L  L  N  S  S  N  S  L  S  R  M  I  L  Q  F  L  F  L  F  Q  L  V  L  R  A  M  R  R  M  *  *  V  M  L  G  F  W  K  I  K  T  L  L  S  *  L  K  L  L  R  S  L  *  R  I  E  R  R  F  C  F  V  R  T  G  I  S  I  V  F  L  R  L  R  C  V  E  M  R  S  G  T  G  R  N  P  C  R  E  K  M  G  W  L  L  R  I  G  *  I  G  G  M  E  V  V  M  K  *  D  M  M  E  G  P  R  R  K  C  I  *  R  G  V  R  *  G  R  V  F  P  L  F  W  F  P  V  P  F  R  L  *  S  P  S  I  M  *  R  T  F  W  R  M  G  C  L  Y  Q  L  M  *  N  *  S  R  *  R  G  Q  N  R  T  V  *  Q  Y  K  R  S  L  V  G  I  G  *  L  Q  H  M  R  L  E  I  S  L  L  P  *  S  R  K  I  G  T  V  W  W  Q  F  L  C  W  G  K  T  G  S  S  K  I  G  L  L  R  I  M  L  R  P  L  T  G  :  L  *  D  F  F  C  V  L  R  M  T  V  W  S  Q  R  R  P  *  S  N  G  M  S  R  L  S  R :   L  V  R  T  N  A  T  R  T  E  L  Q  H  L  R  C  G  R  N  L  K  N  L  C  G  H  G  L  I  D  S  C  *  V  S  R  *  T  T  C  Y  K  L  Y  F  P  L  *  P  S  F  W  L  *  Q  L  L  P  *  F  L  I  L  E  N  L  F  F  S  *  *  S  K  Y  L  L  *  I  A  S  K  </second_frame>
            <third_frame>   V  P  Y  S  S  L  Y  E  L  L  V  Q  H  T  L  I  P  L  I  S  V  T  I  F  N  P  *  S  I  F  H  G  P  P  H  T  P  P  *  V  H  H  T  Q  R  P  P  Q  D  C  S  H  R  R  R  L  P  I  R  Q  *  L  H  F  P  L  H  N  R  N  R  L  S  L  Q  T  C  S  S  *  S  V  H  S  R  N  P  N  Q  L  H  H  Q  S  P  P  *  T  H  *  I  H  S  A  I  S  F  S  S  Y  S  G  G  Y  P  T  *  P  *  T  P  S  R  L  S  H  R  K  D  C  I  F  R  F  Y  *  I  P  Q  I  P  S  V  E  *  Y  F  S  S  C  F  C  F  S  W  C  Y  G  Q  *  G  E  C  D  E  *  C  *  G  F  G  K  S  K  P  Y  *  A  D  *  S  C  *  E  A  F  E  G  *  R  G  D  F  V  L  *  E  P  G  F  L  *  C  F  Y  G  C  V  A  *  R  *  G  A  A  P  G  G  I  L  A  E  K  R  W  V  G  C  *  E  S  D  R  *  G  V  W  R  W  *  *  N  R  I  *  W  R  A  Q  G  E  N  A  F  E  G  E  *  D  R  G  G  C  S  H  Y  F  G  S  Q  C  L  F  D  F  D  H  H  L  *  C  E  G  L  F  G  G  W  G  V  Y  T  N  *  C  E  T  E  A  D  E  G  V  K  T  G  L  Y  N  S  T  K  E  V  *  *  G  *  G  S  Y  S  I  *  G  *  R  *  A  F  C  L  E  A  G  R  L  G  P  C  G  G  S  F  C  V  G  E  R  L  A  V  Q  R  L  A  F  *  G  S  C  *  D  L  *  Q  G :   C  R  I  F  F  A  F  *  G  *  Q  C  G  V  S  E  D  R  E  A  M  E  C  Q  D  Y  L   : D  *  *  E  Q  T  P  P  G  Q  S  C  S  T  *  G  V  G  E  T  *  R  I  Y  A  V  T  V  S  L  I  H  A  E  S  L  G  R  Q  L  A  T  S  C  I  S  L  C  D  R  L  F  G  C  N  N  Y  Y  P  D  F  S  Y  L  R  I  S  F  F  L  N  K  V  N  I  F  S  K  *  H  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0307J13.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85103" stop="84068"/>
                    <exon start="83879" stop="83797"/>
                    <exon start="83662" stop="83573"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1206</number_coding_nucleotides>
                  <number_encoded_amino_acids>402</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFSIPNRSSMDPLTLLREYTIRNDLHKIVRIGDDYRFGNDYTFPCTIETAYRSKHVQANRYTLETLINFITNHHLKHTEYIQQSRSLRIPAVTLPDRKPLLDYLTGKTASSDSIEFLKFPQSNDTSVPVSVSAGVTGNEENVMSDVRVLENQNPIELIKAAEKPLKDREAILFCKNRDFYSVFTAALRRDEERHRAESLQRKDGLVAKNRIDRGYGGGDEIGYDGGPKAKMHLKGSKIGEGVPIILVPSAFSTLITIYNVKDFLEDGVFIPTDVKLKQMKGSKPDCITVQKKFSRDRVVTAYEVRDKPSALKPEDWDRVVAVFVLGKDWQFKDWPFKDHVETFNRVVGFFLRFEDDSVESAKTVKQWNVKIISISKNKRHQDRAAALEVWEKLEEFMRSRSH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 121 chains have been computed
$ 
$ memory statistics:
$ 225240 bytes spliced alignments in total
$ 55 spliced alignments have been stored
$ 4095 bytes was the average size of a spliced alignment
$ 19384 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1615 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 145 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 17:26:04
-->
