<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 17:32:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543135" ref_strand="+" ref_description="SGN-E543135 [TUS-64-M18]">
      <seq>cccattaaatatctggtcttcttttgttgttttgagccattttagagtgttattgttttctgtacagggagataacagaaaatgaagagttggactgttgggtatttttgttcttctttatctggctttgttgttgaaaattgaaggcttgaaatttcataggtctgaacatactgagagaatatcaggaagtgcgggtgatgtcttggaagataatccagttgggagattaaaagtttttgtctatgagcttcctagcaaatataacaagaaaattctgcagaaagaccagcgatgcctcaaccacatgtttgctgctgaaatctttatgcatcgtttcctattatctagcgctgttcgaacctttaatcccgaggaagcagattggttctacacccctgtttacagtacttgtgaccttacaccaaatggcctgtcctttacccttcaagtcaccacgtatgatgaggagtgcaatacaacttatttcttctaactggccttactggaataggacagagggagctgatcacttctttattgtgccacatgattttggtgcttgttttcactatcaagaagaaaaagctattgagaggggaattcttccattgctccaacgtgctaccttggttcaaacttttggacaaagaaatcatgtttgtttgaaggatgggtcaattacaattcctccatatgctcccccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="350" stop="2724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="650" g_stop="836" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="837" i_stop="1713" i_length="877">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1714" g_stop="2102" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="578" r_length="390" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2103" i_stop="2293" i_length="191">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2294" g_stop="2424" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="709" r_length="131" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E543135" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="650" e_stop="836"/>
          <exon e_start="1714" e_stop="2102"/>
          <exon e_start="2294" e_stop="2424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTAAATATCTGGTCTTCTTTTGTTGTTTTGAGCCATTTTAGAGTGTTATTGTTTTCTGTACAGGGAGATAACAGAAAATGAAGAGTTGGACT-TTGGGTATTTTTGTTCTTCTTTATCTGGCTTTGTTGTTGAAAATTGAAGGCTTGAAATTTCATAGGTCTGAACATACTGAGAGAATATCAGGTACATTTTCTTTTGGGTGCTAATTGTTTTTGGTTTAGCTTGGAATTATGTGTAATTTCATGTCTTACTGAGATGAGAATACTTTTTGAGCCGAGGGTCTATCAAAAACAATCTCTCTTACCCTCCCCAGAATCCACTCGTTGGATTATGTTGTTGTTTTTACCTATGTTGCTCGGACTCTTCAATAATGTGGACGGGTCTAGCATCGAAAGTGAAGAGTCCGTGTGTTACACGTTGTTACTGAGATGGGAATACTTGTTTGTTATAGTGAATTATGTCTTTCTTGTATTGGATACTTCATACTTGTATGAATTTCTTTTGGACTTTTTGTTTTCATTAAATATGTCCAGATTCAGCTGTTCCTGCTCTGAAATGGATGTGTTTTGGGGAACTTAGGCAATGTAGGAGGTTACAAGTATCTGGTCTTAGAGGCACTATTGAAAATTCATGTTAGTGAGATTGACGATATTAGCTTTCATTCCTGTGTAAGACTTTTCTTTAAAGGCTCCAATATTATTGATGATTTCAGCTGGTTTCATTAACGTATTCTAAGTTCTATAGGGATATAGTAGTGGTTAACCCGTAAGATCATTCCTATGAGGAATCATTATAGTATCAATTATAACAACTGTGCTCACCTTAGAGCTAACCCTGTATAAAGATGAGGTATTTAGGTTGTAATTTAGATGTTTTAAGGTTAGTCATAAATTTCCAAGGGGTATTTTGAGACTCTCAATAAAACAGAGTTCCAAATTCTTCTGAGCATATAAACATCATCTTTTACTTGTTTAAATGGTTTTAGCCTATAATGATTTGGATACTTGCTTACAACACTAAGTATTAACTTCTTAGTTTTCCTTCTATTTCCAAAATTTAGGAAGTGCGGGTGATGTCTTGGAAGATAATCCAGTTGGGAGATTAAAAGTTTTTGTCTATGAGCTTCCTAGCAAATATAACAAGAAAATTCTGCAGAAAGACCAGCGATGCCTCAACCACATGTTTGCTGCTGAAATCTTTATGCATCGTTTCCTATTATCTAGCGCTGTTCGAACCTTTAATCCCGAGGAAGCAGATTGGTTCTACACCCCTGTTTACAGTACTTGTGACCTTACACCAAATGGCCT-TCCTTTACCCTTCAAGTCACCACGTATGATGAGGAGTGCAATACAACTTATTTCTTCTAACTGGCCTTACTGGAATAGGACAGAGGGAGCTGATCACTTCTTTATTGTGCCACATGATTTTGGTGCTTGTTTTCACTATCAAGTGAGTATCTCTCTCTTTCTCTCTATCATACACACACACTCACATAATTGGATAGAACCCACGGAAAGGTTACCAACAAATATCCCTTAGGTTCATGATTATCAGTTTTGTCATTTTCAACTCAATTTTTCAGTCATTTCTGTCAAGGGTGTTAAAGATGTTTTGGTTACATTGGTTTTGCGCCATTGCAGGAAGAAAAAGCTATTGAGAGGGGAATTCTTCCATTGCTCCAACGTGCTACCTTGGTTCAAACTTTTGGACAAAGAAATCATGTTTGTTTGAAGGATGGTTCAATTACAATTCCTCCATATGCTCCCCCACA</genome_strand>
        <mrna_strand>CCCATTAAATATCTGGTCTTCTTTTGTTGTTTTGAGCCATTTTAGAGTGTTATTGTTTTCTGTACAGGGAGATAACAGAAAATGAAGAGTTGGACTGTTGGGTATTTTTGTTCTTCTTTATCTGGCTTTGTTGTTGAAAATTGAAGGCTTGAAATTTCATAGGTCTGAACATACTGAGAGAATATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGCGGGTGATGTCTTGGAAGATAATCCAGTTGGGAGATTAAAAGTTTTTGTCTATGAGCTTCCTAGCAAATATAACAAGAAAATTCTGCAGAAAGACCAGCGATGCCTCAACCACATGTTTGCTGCTGAAATCTTTATGCATCGTTTCCTATTATCTAGCGCTGTTCGAACCTTTAATCCCGAGGAAGCAGATTGGTTCTACACCCCTGTTTACAGTACTTGTGACCTTACACCAAATGGCCTGTCCTTTACCCTTCAAGTCACCACGTATGATGAGGAGTGCAATACAACTTATTTCTTCTAACTGGCCTTACTGGAATAGGACAGAGGGAGCTGATCACTTCTTTATTGTGCCACATGATTTTGGTGCTTGTTTTCACTATCAA...............................................................................................................................................................................................GAAGAAAAAGCTATTGAGAGGGGAATTCTTCCATTGCTCCAACGTGCTACCTTGGTTCAAACTTTTGGACAAAGAAATCATGTTTGTTTGAAGGATGGGTCAATTACAATTCCTCCATATGCTCCCCCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303363" ref_strand="+" ref_description="SGN-E303363 [cLEX-2-O4]">
      <seq>ccattaaatatctggtcttcttttgttgttttgagccattttagagtgttattgttttctgtacagggagataacagaaaatgaagagttggactttgggtatttttgttcttctttatctggctttgttgttgaaaattgaaggcttgaaatttgataggtctgaacatactgagagaatatcaggaagtgcgggtgatgtcttggaagataatccatttgggagattaaaagtttttgtgtatgagcttcctagcaaatataacaagacaattctgctgaaagaccagcgatgcctcaaccacatgtttgctgctgaaatctttatgcatcgtttcctattatctagcgctgttcgaacctttagtcgctaggtagcagattgattctacacccgtgtttacagtacttgtgaccttacaccaaatggccttcctttacccttgaagtcaccacgtatgatgaagagtgcaatacaacttatttcttctaactggccttactggaataggacagagggagctgatcacttgtttattgtgccacatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="351" stop="2378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="651" g_stop="836" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="837" i_stop="1713" i_length="877">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1714" g_stop="2078" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="551" r_length="365" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E303363" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="651" e_stop="836"/>
          <exon e_start="1714" e_stop="2078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTAAATATCTGGTCTTCTTTTGTTGTTTTGAGCCATTTTAGAGTGTTATTGTTTTCTGTACAGGGAGATAACAGAAAATGAAGAGTTGGACTTTGGGTATTTTTGTTCTTCTTTATCTGGCTTTGTTGTTGAAAATTGAAGGCTTGAAATTTCATAGGTCTGAACATACTGAGAGAATATCAGGTACATTTTCTTTTGGGTGCTAATTGTTTTTGGTTTAGCTTGGAATTATGTGTAATTTCATGTCTTACTGAGATGAGAATACTTTTTGAGCCGAGGGTCTATCAAAAACAATCTCTCTTACCCTCCCCAGAATCCACTCGTTGGATTATGTTGTTGTTTTTACCTATGTTGCTCGGACTCTTCAATAATGTGGACGGGTCTAGCATCGAAAGTGAAGAGTCCGTGTGTTACACGTTGTTACTGAGATGGGAATACTTGTTTGTTATAGTGAATTATGTCTTTCTTGTATTGGATACTTCATACTTGTATGAATTTCTTTTGGACTTTTTGTTTTCATTAAATATGTCCAGATTCAGCTGTTCCTGCTCTGAAATGGATGTGTTTTGGGGAACTTAGGCAATGTAGGAGGTTACAAGTATCTGGTCTTAGAGGCACTATTGAAAATTCATGTTAGTGAGATTGACGATATTAGCTTTCATTCCTGTGTAAGACTTTTCTTTAAAGGCTCCAATATTATTGATGATTTCAGCTGGTTTCATTAACGTATTCTAAGTTCTATAGGGATATAGTAGTGGTTAACCCGTAAGATCATTCCTATGAGGAATCATTATAGTATCAATTATAACAACTGTGCTCACCTTAGAGCTAACCCTGTATAAAGATGAGGTATTTAGGTTGTAATTTAGATGTTTTAAGGTTAGTCATAAATTTCCAAGGGGTATTTTGAGACTCTCAATAAAACAGAGTTCCAAATTCTTCTGAGCATATAAACATCATCTTTTACTTGTTTAAATGGTTTTAGCCTATAATGATTTGGATACTTGCTTACAACACTAAGTATTAACTTCTTAGTTTTCCTTCTATTTCCAAAATTTAGGAAGTGCGGGTGATGTCTTGGAAGATAATCCAGTTGGGAGATTAAAAGTTTTTGTCTATGAGCTTCCTAGCAAATATAACAAGAAAATTCTGCAGAAAGACCAGCGATGCCTCAACCACATGTTTGCTGCTGAAATCTTTATGCATCGTTTCCTATTATCTAGCGCTGTTCGAACCTTTAATCCCGAGGAAGCAGATTGGTTCTACACCCCTGTTTACAGTACTTGTGACCTTACACCAAATGGCCTTCCTTTACCCTTCAAGTCACCACGTATGATGAGGAGTGCAATACAACTTATTTCTTCTAACTGGCCTTACTGGAATAGGACAGAGGGAGCTGATCACTTCTTTATTGTGCCACATGAT</genome_strand>
        <mrna_strand>CCATTAAATATCTGGTCTTCTTTTGTTGTTTTGAGCCATTTTAGAGTGTTATTGTTTTCTGTACAGGGAGATAACAGAAAATGAAGAGTTGGACTTTGGGTATTTTTGTTCTTCTTTATCTGGCTTTGTTGTTGAAAATTGAAGGCTTGAAATTTGATAGGTCTGAACATACTGAGAGAATATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGCGGGTGATGTCTTGGAAGATAATCCATTTGGGAGATTAAAAGTTTTTGTGTATGAGCTTCCTAGCAAATATAACAAGACAATTCTGCTGAAAGACCAGCGATGCCTCAACCACATGTTTGCTGCTGAAATCTTTATGCATCGTTTCCTATTATCTAGCGCTGTTCGAACCTTTAGTCGCTAGGTAGCAGATTGATTCTACACCCGTGTTTACAGTACTTGTGACCTTACACCAAATGGCCTTCCTTTACCCTTGAAGTCACCACGTATGATGAAGAGTGCAATACAACTTATTTCTTCTAACTGGCCTTACTGGAATAGGACAGAGGGAGCTGATCACTTGTTTATTGTGCCACATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325447" ref_strand="+" ref_description="SGN-E325447 [cTOC-1-L13]">
      <seq>gaaaatgaagagttggactttgggtatttttgttcttctttatctggctttgttgttgaaaattgaaggcttgaaatttcataggtctgaacatactgagagaatatcaggaagtgcgggtgatgtcttggaagataatccagttgggagattaaaagtttttgtctatgagcttcctagcaaatataacaagaaaattctgcagaaagaccagcgatgcctcaaccacatgtttgctgctgaaatctttatgcatcgtttcctattatctagcgctgttcgaacctttaatcccgaggaagcagattggttctacacccctgtttacagtacttgtgaccttacaccaaatggccttcctttacccttcaagtcaccacgtatgatgaggagtgcaatacaacttatttcttctaactggccttactggaataggacagagggagctgatcacttctttattgtgccacatgattttggtgcttgttttcactatcaagaagaaaaagctattgagaggggaattcttccattgctccaacgtgctaccttggttcaaacttttggacaaagaaatcatgtttgtttgaaggatggttcaattacaattcctccatatgctccccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="427" stop="2722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="727" g_stop="836" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="837" i_stop="1713" i_length="877">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1714" g_stop="2102" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="499" r_length="389" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2103" i_stop="2293" i_length="191">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2294" g_stop="2422" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="628" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E325447" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="727" e_stop="836"/>
          <exon e_start="1714" e_stop="2102"/>
          <exon e_start="2294" e_stop="2422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGAAGAGTTGGACTTTGGGTATTTTTGTTCTTCTTTATCTGGCTTTGTTGTTGAAAATTGAAGGCTTGAAATTTCATAGGTCTGAACATACTGAGAGAATATCAGGTACATTTTCTTTTGGGTGCTAATTGTTTTTGGTTTAGCTTGGAATTATGTGTAATTTCATGTCTTACTGAGATGAGAATACTTTTTGAGCCGAGGGTCTATCAAAAACAATCTCTCTTACCCTCCCCAGAATCCACTCGTTGGATTATGTTGTTGTTTTTACCTATGTTGCTCGGACTCTTCAATAATGTGGACGGGTCTAGCATCGAAAGTGAAGAGTCCGTGTGTTACACGTTGTTACTGAGATGGGAATACTTGTTTGTTATAGTGAATTATGTCTTTCTTGTATTGGATACTTCATACTTGTATGAATTTCTTTTGGACTTTTTGTTTTCATTAAATATGTCCAGATTCAGCTGTTCCTGCTCTGAAATGGATGTGTTTTGGGGAACTTAGGCAATGTAGGAGGTTACAAGTATCTGGTCTTAGAGGCACTATTGAAAATTCATGTTAGTGAGATTGACGATATTAGCTTTCATTCCTGTGTAAGACTTTTCTTTAAAGGCTCCAATATTATTGATGATTTCAGCTGGTTTCATTAACGTATTCTAAGTTCTATAGGGATATAGTAGTGGTTAACCCGTAAGATCATTCCTATGAGGAATCATTATAGTATCAATTATAACAACTGTGCTCACCTTAGAGCTAACCCTGTATAAAGATGAGGTATTTAGGTTGTAATTTAGATGTTTTAAGGTTAGTCATAAATTTCCAAGGGGTATTTTGAGACTCTCAATAAAACAGAGTTCCAAATTCTTCTGAGCATATAAACATCATCTTTTACTTGTTTAAATGGTTTTAGCCTATAATGATTTGGATACTTGCTTACAACACTAAGTATTAACTTCTTAGTTTTCCTTCTATTTCCAAAATTTAGGAAGTGCGGGTGATGTCTTGGAAGATAATCCAGTTGGGAGATTAAAAGTTTTTGTCTATGAGCTTCCTAGCAAATATAACAAGAAAATTCTGCAGAAAGACCAGCGATGCCTCAACCACATGTTTGCTGCTGAAATCTTTATGCATCGTTTCCTATTATCTAGCGCTGTTCGAACCTTTAATCCCGAGGAAGCAGATTGGTTCTACACCCCTGTTTACAGTACTTGTGACCTTACACCAAATGGCCTTCCTTTACCCTTCAAGTCACCACGTATGATGAGGAGTGCAATACAACTTATTTCTTCTAACTGGCCTTACTGGAATAGGACAGAGGGAGCTGATCACTTCTTTATTGTGCCACATGATTTTGGTGCTTGTTTTCACTATCAAGTGAGTATCTCTCTCTTTCTCTCTATCATACACACACACTCACATAATTGGATAGAACCCACGGAAAGGTTACCAACAAATATCCCTTAGGTTCATGATTATCAGTTTTGTCATTTTCAACTCAATTTTTCAGTCATTTCTGTCAAGGGTGTTAAAGATGTTTTGGTTACATTGGTTTTGCGCCATTGCAGGAAGAAAAAGCTATTGAGAGGGGAATTCTTCCATTGCTCCAACGTGCTACCTTGGTTCAAACTTTTGGACAAAGAAATCATGTTTGTTTGAAGGATGGTTCAATTACAATTCCTCCATATGCTCCCCCA</genome_strand>
        <mrna_strand>GAAAATGAAGAGTTGGACTTTGGGTATTTTTGTTCTTCTTTATCTGGCTTTGTTGTTGAAAATTGAAGGCTTGAAATTTCATAGGTCTGAACATACTGAGAGAATATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGCGGGTGATGTCTTGGAAGATAATCCAGTTGGGAGATTAAAAGTTTTTGTCTATGAGCTTCCTAGCAAATATAACAAGAAAATTCTGCAGAAAGACCAGCGATGCCTCAACCACATGTTTGCTGCTGAAATCTTTATGCATCGTTTCCTATTATCTAGCGCTGTTCGAACCTTTAATCCCGAGGAAGCAGATTGGTTCTACACCCCTGTTTACAGTACTTGTGACCTTACACCAAATGGCCTTCCTTTACCCTTCAAGTCACCACGTATGATGAGGAGTGCAATACAACTTATTTCTTCTAACTGGCCTTACTGGAATAGGACAGAGGGAGCTGATCACTTCTTTATTGTGCCACATGATTTTGGTGCTTGTTTTCACTATCAA...............................................................................................................................................................................................GAAGAAAAAGCTATTGAGAGGGGAATTCTTCCATTGCTCCAACGTGCTACCTTGGTTCAAACTTTTGGACAAAGAAATCATGTTTGTTTGAAGGATGGTTCAATTACAATTCCTCCATATGCTCCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310799" ref_strand="+" ref_description="SGN-E310799 [cLEZ-15-G1]">
      <seq>atttcataggtctgaacatactgagagaatatcaggaagtgcgggtgatgtcttggaagataatccagttgggagattaaaagtttttgtctatgagcttcctagcaaatataacatgaaaattctgcagaaagaccagcgatgcctcaaccacatgtttgctgctgaaatctttatgcatcgtttcctattatctagcgctgttcgaacctttaatcccgaggaagcagattggttctacacccctgtttacagtacttgtgaccttacaccaaatggccttcctttacccttcaagtcaccacgtatgatgaggagtgcaatacaacttatttcttctaactggacttactggaataggacagacggagctgatcacttctttattgtgccacatgattttggtgcttgttttcactatcaagaagaaaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="502" stop="2403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="802" g_stop="836" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="837" i_stop="1713" i_length="877">
            <donor d_prob="0.951" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1714" g_stop="2102" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="424" r_length="389" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2103" i_stop="2293" i_length="191">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2294" g_stop="2305" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="436" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E310799" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="802" e_stop="836"/>
          <exon e_start="1714" e_stop="2102"/>
          <exon e_start="2294" e_stop="2305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATAGGTCTGAACATACTGAGAGAATATCAGGTACATTTTCTTTTGGGTGCTAATTGTTTTTGGTTTAGCTTGGAATTATGTGTAATTTCATGTCTTACTGAGATGAGAATACTTTTTGAGCCGAGGGTCTATCAAAAACAATCTCTCTTACCCTCCCCAGAATCCACTCGTTGGATTATGTTGTTGTTTTTACCTATGTTGCTCGGACTCTTCAATAATGTGGACGGGTCTAGCATCGAAAGTGAAGAGTCCGTGTGTTACACGTTGTTACTGAGATGGGAATACTTGTTTGTTATAGTGAATTATGTCTTTCTTGTATTGGATACTTCATACTTGTATGAATTTCTTTTGGACTTTTTGTTTTCATTAAATATGTCCAGATTCAGCTGTTCCTGCTCTGAAATGGATGTGTTTTGGGGAACTTAGGCAATGTAGGAGGTTACAAGTATCTGGTCTTAGAGGCACTATTGAAAATTCATGTTAGTGAGATTGACGATATTAGCTTTCATTCCTGTGTAAGACTTTTCTTTAAAGGCTCCAATATTATTGATGATTTCAGCTGGTTTCATTAACGTATTCTAAGTTCTATAGGGATATAGTAGTGGTTAACCCGTAAGATCATTCCTATGAGGAATCATTATAGTATCAATTATAACAACTGTGCTCACCTTAGAGCTAACCCTGTATAAAGATGAGGTATTTAGGTTGTAATTTAGATGTTTTAAGGTTAGTCATAAATTTCCAAGGGGTATTTTGAGACTCTCAATAAAACAGAGTTCCAAATTCTTCTGAGCATATAAACATCATCTTTTACTTGTTTAAATGGTTTTAGCCTATAATGATTTGGATACTTGCTTACAACACTAAGTATTAACTTCTTAGTTTTCCTTCTATTTCCAAAATTTAGGAAGTGCGGGTGATGTCTTGGAAGATAATCCAGTTGGGAGATTAAAAGTTTTTGTCTATGAGCTTCCTAGCAAATATAACAAGAAAATTCTGCAGAAAGACCAGCGATGCCTCAACCACATGTTTGCTGCTGAAATCTTTATGCATCGTTTCCTATTATCTAGCGCTGTTCGAACCTTTAATCCCGAGGAAGCAGATTGGTTCTACACCCCTGTTTACAGTACTTGTGACCTTACACCAAATGGCCTTCCTTTACCCTTCAAGTCACCACGTATGATGAGGAGTGCAATACAACTTATTTCTTCTAACTGGCCTTACTGGAATAGGACAGAGGGAGCTGATCACTTCTTTATTGTGCCACATGATTTTGGTGCTTGTTTTCACTATCAAGTGAGTATCTCTCTCTTTCTCTCTATCATACACACACACTCACATAATTGGATAGAACCCACGGAAAGGTTACCAACAAATATCCCTTAGGTTCATGATTATCAGTTTTGTCATTTTCAACTCAATTTTTCAGTCATTTCTGTCAAGGGTGTTAAAGATGTTTTGGTTACATTGGTTTTGCGCCATTGCAGGAAGAAAAAGCT</genome_strand>
        <mrna_strand>ATTTCATAGGTCTGAACATACTGAGAGAATATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGCGGGTGATGTCTTGGAAGATAATCCAGTTGGGAGATTAAAAGTTTTTGTCTATGAGCTTCCTAGCAAATATAACATGAAAATTCTGCAGAAAGACCAGCGATGCCTCAACCACATGTTTGCTGCTGAAATCTTTATGCATCGTTTCCTATTATCTAGCGCTGTTCGAACCTTTAATCCCGAGGAAGCAGATTGGTTCTACACCCCTGTTTACAGTACTTGTGACCTTACACCAAATGGCCTTCCTTTACCCTTCAAGTCACCACGTATGATGAGGAGTGCAATACAACTTATTTCTTCTAACTGGACTTACTGGAATAGGACAGACGGAGCTGATCACTTCTTTATTGTGCCACATGATTTTGGTGCTTGTTTTCACTATCAA...............................................................................................................................................................................................GAAGAAAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261610" ref_strand="+" ref_description="SGN-E261610 [cLEG-57-L10]">
      <seq>aagtgcgggtgatgtcttggaagataatccagttgggagattaaaagtttttgtctatgagcttcctagcaaatataacaagaaaattctgcagaaagaccagcgatgcctcaaccacatgtttgctgctgaaatctttatgcatcgtttcctattatctagcgctgttcgaacctttaatcccgaggaagcagattggttctacacccctgtttacagtacttgtgaccttacaccaaatggccttcctttacccttcaagtcaccacgtatgatgaggagtgcaatacaacttatttcttctaactggccttactggaataggacagagggagctgatcacttctttattgtgccacatgattttggtgcttgttttcactatcaagaagaaaaagctattgagaggggaattcttccattgctccaacgtgctaccttggttcaaacttttggacaaagaaatcatgtttgtttgaaggatggttcaattacaattcctccatatgctcccccacagaaaatgcagtcccacttgatccctccagatactccccggtctatctttgtttatttccgaggcttgttttatgatgttggaaatgatccagagggtggttactatgctagaggtgcccgagcagcagtgtgggaagactttaaaaacatcctctctttgatattctactgagcatccaactacttactatgaagacatgcagcgagccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1415" stop="3178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1715" g_stop="2102" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2103" i_stop="2293" i_length="191">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2294" g_stop="2535" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="630" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2536" i_stop="2776" i_length="241">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2777" g_stop="2878" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="730" r_length="100" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E261610" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1715" e_stop="2102"/>
          <exon e_start="2294" e_stop="2535"/>
          <exon e_start="2777" e_stop="2878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGCGGGTGATGTCTTGGAAGATAATCCAGTTGGGAGATTAAAAGTTTTTGTCTATGAGCTTCCTAGCAAATATAACAAGAAAATTCTGCAGAAAGACCAGCGATGCCTCAACCACATGTTTGCTGCTGAAATCTTTATGCATCGTTTCCTATTATCTAGCGCTGTTCGAACCTTTAATCCCGAGGAAGCAGATTGGTTCTACACCCCTGTTTACAGTACTTGTGACCTTACACCAAATGGCCTTCCTTTACCCTTCAAGTCACCACGTATGATGAGGAGTGCAATACAACTTATTTCTTCTAACTGGCCTTACTGGAATAGGACAGAGGGAGCTGATCACTTCTTTATTGTGCCACATGATTTTGGTGCTTGTTTTCACTATCAAGTGAGTATCTCTCTCTTTCTCTCTATCATACACACACACTCACATAATTGGATAGAACCCACGGAAAGGTTACCAACAAATATCCCTTAGGTTCATGATTATCAGTTTTGTCATTTTCAACTCAATTTTTCAGTCATTTCTGTCAAGGGTGTTAAAGATGTTTTGGTTACATTGGTTTTGCGCCATTGCAGGAAGAAAAAGCTATTGAGAGGGGAATTCTTCCATTGCTCCAACGTGCTACCTTGGTTCAAACTTTTGGACAAAGAAATCATGTTTGTTTGAAGGATGGTTCAATTACAATTCCTCCATATGCTCCCCCACAGAAAATGCAGTCCCACTTGATCCCTCCAGATACTCCCCGGTCTATCTTTGTTTATTTCCGAGGCTTGTTTTATGATGTTGGAAATGATCCAGAGGGTGGTTACTATGCTAGGTATACCCATGACTCATGAATAAATCACTTGTTTTTTACACTAAAGCTACTTATCAAAAGGCCCTAGTATTGATGCTTAGTTAATTGATTTATTCATTGTGATTCTGGGAATGAATGAAGATTGTTTAAATAAATGATGACTGTAGAAGTTGACAAATAATATTCTCATTTAGTCTACTCACTACTGATCTCCGAGACATGGAAAGACAAAATAACTAACTATGATTATTTCTCACTTCAGAGGTGCCCGAGCAGCAGTGTGGGAGAACTTTAAAAACAATCCTCTCTTTGATATTTCTACTGAGCATCCAACTACTTACTATGAAGACATGCAGCGAGCCAT</genome_strand>
        <mrna_strand>AAGTGCGGGTGATGTCTTGGAAGATAATCCAGTTGGGAGATTAAAAGTTTTTGTCTATGAGCTTCCTAGCAAATATAACAAGAAAATTCTGCAGAAAGACCAGCGATGCCTCAACCACATGTTTGCTGCTGAAATCTTTATGCATCGTTTCCTATTATCTAGCGCTGTTCGAACCTTTAATCCCGAGGAAGCAGATTGGTTCTACACCCCTGTTTACAGTACTTGTGACCTTACACCAAATGGCCTTCCTTTACCCTTCAAGTCACCACGTATGATGAGGAGTGCAATACAACTTATTTCTTCTAACTGGCCTTACTGGAATAGGACAGAGGGAGCTGATCACTTCTTTATTGTGCCACATGATTTTGGTGCTTGTTTTCACTATCAA...............................................................................................................................................................................................GAAGAAAAAGCTATTGAGAGGGGAATTCTTCCATTGCTCCAACGTGCTACCTTGGTTCAAACTTTTGGACAAAGAAATCATGTTTGTTTGAAGGATGGTTCAATTACAATTCCTCCATATGCTCCCCCACAGAAAATGCAGTCCCACTTGATCCCTCCAGATACTCCCCGGTCTATCTTTGTTTATTTCCGAGGCTTGTTTTATGATGTTGGAAATGATCCAGAGGGTGGTTACTATGCTAG.................................................................................................................................................................................................................................................AGGTGCCCGAGCAGCAGTGTGGGAAGACTTTAAAAAC-ATCCTCTCTTTGATA-TTCTACTGAGCATCCAACTACTTACTATGAAGACATGCAGCGAGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262525" ref_strand="+" ref_description="SGN-E262525 [cLEG-63-G17]">
      <seq>aagtgcgggtgatgtcttggaagataatccagttgggagattaaaagtttttgtctatgagcttcctagcaaatataacaagaaaattctgcagaaagaccagcgatgcctcaaccacatgtttgctgctgaaatctttatgcatcgtttcctattatctagcgctgttcgaacctttaatcccgaggaagcagattggttctacacccctgtttacagtacttgtgaccttacaccaaatggccttcctttacccttcaagtcaccacgtatgatgaggagtgcaatacaacttatttcttctaactggccttactggaataggacagagggagctgatcacttctttattgtgccacatgattttggtgcttgttttcactatcaagaagaaaaagctattgagaggggaattcttccattgctccaacgtgctaccttggttcaaacttttggacaaagaaatcatgtttgtttgaaggatggttcaattacaattcctccatatgctcccccacagaaaatgcagtcccacttgatccctccagatactccccggtctatctttgnttatttccgaggcttgttttatgatgttggaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1415" stop="2811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1715" g_stop="2102" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2103" i_stop="2293" i_length="191">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2294" g_stop="2511" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="606" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E262525" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1715" e_stop="2102"/>
          <exon e_start="2294" e_stop="2511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGCGGGTGATGTCTTGGAAGATAATCCAGTTGGGAGATTAAAAGTTTTTGTCTATGAGCTTCCTAGCAAATATAACAAGAAAATTCTGCAGAAAGACCAGCGATGCCTCAACCACATGTTTGCTGCTGAAATCTTTATGCATCGTTTCCTATTATCTAGCGCTGTTCGAACCTTTAATCCCGAGGAAGCAGATTGGTTCTACACCCCTGTTTACAGTACTTGTGACCTTACACCAAATGGCCTTCCTTTACCCTTCAAGTCACCACGTATGATGAGGAGTGCAATACAACTTATTTCTTCTAACTGGCCTTACTGGAATAGGACAGAGGGAGCTGATCACTTCTTTATTGTGCCACATGATTTTGGTGCTTGTTTTCACTATCAAGTGAGTATCTCTCTCTTTCTCTCTATCATACACACACACTCACATAATTGGATAGAACCCACGGAAAGGTTACCAACAAATATCCCTTAGGTTCATGATTATCAGTTTTGTCATTTTCAACTCAATTTTTCAGTCATTTCTGTCAAGGGTGTTAAAGATGTTTTGGTTACATTGGTTTTGCGCCATTGCAGGAAGAAAAAGCTATTGAGAGGGGAATTCTTCCATTGCTCCAACGTGCTACCTTGGTTCAAACTTTTGGACAAAGAAATCATGTTTGTTTGAAGGATGGTTCAATTACAATTCCTCCATATGCTCCCCCACAGAAAATGCAGTCCCACTTGATCCCTCCAGATACTCCCCGGTCTATCTTTGTTTATTTCCGAGGCTTGTTTTATGATGTTGGAAATGA</genome_strand>
        <mrna_strand>AAGTGCGGGTGATGTCTTGGAAGATAATCCAGTTGGGAGATTAAAAGTTTTTGTCTATGAGCTTCCTAGCAAATATAACAAGAAAATTCTGCAGAAAGACCAGCGATGCCTCAACCACATGTTTGCTGCTGAAATCTTTATGCATCGTTTCCTATTATCTAGCGCTGTTCGAACCTTTAATCCCGAGGAAGCAGATTGGTTCTACACCCCTGTTTACAGTACTTGTGACCTTACACCAAATGGCCTTCCTTTACCCTTCAAGTCACCACGTATGATGAGGAGTGCAATACAACTTATTTCTTCTAACTGGCCTTACTGGAATAGGACAGAGGGAGCTGATCACTTCTTTATTGTGCCACATGATTTTGGTGCTTGTTTTCACTATCAA...............................................................................................................................................................................................GAAGAAAAAGCTATTGAGAGGGGAATTCTTCCATTGCTCCAACGTGCTACCTTGGTTCAAACTTTTGGACAAAGAAATCATGTTTGTTTGAAGGATGGTTCAATTACAATTCCTCCATATGCTCCCCCACAGAAAATGCAGTCCCACTTGATCCCTCCAGATACTCCCCGGTCTATCTTTGNTTATTTCCGAGGCTTGTTTTATGATGTTGGAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254436" ref_strand="+" ref_description="SGN-E254436 [cLEG-27-N11]">
      <seq>tgcctcaaccacatgtttgctgctgaaatctttatgcatcgtttcctattatctagcgctgttcgaacctttaatcccgaggaagcagattggttctacacccctgtttacagtacttgtgaccttacaccaaatggccttcctttacccttcaagtcaccacgtatgatgaggagtgcaatacaacttatttcttctaactggccttactggaataggacagagggagctgatcacttctttattgtgccacatgattttggtgcttgttttcactatcaagaagaaaaagctattgagaggggaattcttccattgctccaacgtgctaccttggttcaaacttttggacaaagaaatcatgtttgtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1521" stop="2684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1821" g_stop="2102" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2103" i_stop="2293" i_length="191">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2294" g_stop="2384" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="373" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E254436" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1821" e_stop="2102"/>
          <exon e_start="2294" e_stop="2384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTCAACCACATGTTTGCTGCTGAAATCTTTATGCATCGTTTCCTATTATCTAGCGCTGTTCGAACCTTTAATCCCGAGGAAGCAGATTGGTTCTACACCCCTGTTTACAGTACTTGTGACCTTACACCAAATGGCCTTCCTTTACCCTTCAAGTCACCACGTATGATGAGGAGTGCAATACAACTTATTTCTTCTAACTGGCCTTACTGGAATAGGACAGAGGGAGCTGATCACTTCTTTATTGTGCCACATGATTTTGGTGCTTGTTTTCACTATCAAGTGAGTATCTCTCTCTTTCTCTCTATCATACACACACACTCACATAATTGGATAGAACCCACGGAAAGGTTACCAACAAATATCCCTTAGGTTCATGATTATCAGTTTTGTCATTTTCAACTCAATTTTTCAGTCATTTCTGTCAAGGGTGTTAAAGATGTTTTGGTTACATTGGTTTTGCGCCATTGCAGGAAGAAAAAGCTATTGAGAGGGGAATTCTTCCATTGCTCCAACGTGCTACCTTGGTTCAAACTTTTGGACAAAGAAATCATGTTTGTTTGA</genome_strand>
        <mrna_strand>TGCCTCAACCACATGTTTGCTGCTGAAATCTTTATGCATCGTTTCCTATTATCTAGCGCTGTTCGAACCTTTAATCCCGAGGAAGCAGATTGGTTCTACACCCCTGTTTACAGTACTTGTGACCTTACACCAAATGGCCTTCCTTTACCCTTCAAGTCACCACGTATGATGAGGAGTGCAATACAACTTATTTCTTCTAACTGGCCTTACTGGAATAGGACAGAGGGAGCTGATCACTTCTTTATTGTGCCACATGATTTTGGTGCTTGTTTTCACTATCAA...............................................................................................................................................................................................GAAGAAAAAGCTATTGAGAGGGGAATTCTTCCATTGCTCCAACGTGCTACCTTGGTTCAAACTTTTGGACAAAGAAATCATGTTTGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740783" ref_strand="+" ref_description="SGN-E740783 [LC22DE04]">
      <seq>cgtttcctattatctagcgctgttcgaacctttaatcccgaggaagcagattggttctacacccctgtttacagtacttgtgaccttacaccaaatggccttcctttacccttcaagtcaccacgtatgatgaggagtgcaatacaacttatttcttctaactggccttactggaataggacagagggagctgatcacttctttattgtgccacatgattttggtgcttgttttcactatcaagaagaaaaagctattgagaggggaattcttccattgctccaacgtgctaccttggttcaaacttttggacaaagaaatcatgtttgtttgaaggatggttcaattacaattcctccatatgctcccccacagaaaatgcagtcccacttgatccctccagatactccccggtctatctttgtttatttccgaggcttgttttatgatgttggaaatgatccagagggtggttactatgctagaggtgcccgagcagcagtgtgggagaactttaaaaacaatcctctctttgatatttctactgagcatccaactacttactatgaagacatgcagcgagccatcttttgcttgtgccctctaggatgggcaccatggagtccgagattggttgaagcagttatatttggatgcatccctgttattatagcagatgacattgtcttgccatttgctgacgcaatcccttgggaagatataggcgtgtttgtagcagagaaagatgttccaaatttggacaccattctcacttctattcgaccagaagaaatattaaggaagcagagactgcttgccaatccttcaatgaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1560" stop="3427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1860" g_stop="2102" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2103" i_stop="2293" i_length="191">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2294" g_stop="2535" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="485" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2536" i_stop="2776" i_length="241">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2777" g_stop="3127" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="836" r_length="351" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E740783" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1860" e_stop="2102"/>
          <exon e_start="2294" e_stop="2535"/>
          <exon e_start="2777" e_stop="3127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTCCTATTATCTAGCGCTGTTCGAACCTTTAATCCCGAGGAAGCAGATTGGTTCTACACCCCTGTTTACAGTACTTGTGACCTTACACCAAATGGCCTTCCTTTACCCTTCAAGTCACCACGTATGATGAGGAGTGCAATACAACTTATTTCTTCTAACTGGCCTTACTGGAATAGGACAGAGGGAGCTGATCACTTCTTTATTGTGCCACATGATTTTGGTGCTTGTTTTCACTATCAAGTGAGTATCTCTCTCTTTCTCTCTATCATACACACACACTCACATAATTGGATAGAACCCACGGAAAGGTTACCAACAAATATCCCTTAGGTTCATGATTATCAGTTTTGTCATTTTCAACTCAATTTTTCAGTCATTTCTGTCAAGGGTGTTAAAGATGTTTTGGTTACATTGGTTTTGCGCCATTGCAGGAAGAAAAAGCTATTGAGAGGGGAATTCTTCCATTGCTCCAACGTGCTACCTTGGTTCAAACTTTTGGACAAAGAAATCATGTTTGTTTGAAGGATGGTTCAATTACAATTCCTCCATATGCTCCCCCACAGAAAATGCAGTCCCACTTGATCCCTCCAGATACTCCCCGGTCTATCTTTGTTTATTTCCGAGGCTTGTTTTATGATGTTGGAAATGATCCAGAGGGTGGTTACTATGCTAGGTATACCCATGACTCATGAATAAATCACTTGTTTTTTACACTAAAGCTACTTATCAAAAGGCCCTAGTATTGATGCTTAGTTAATTGATTTATTCATTGTGATTCTGGGAATGAATGAAGATTGTTTAAATAAATGATGACTGTAGAAGTTGACAAATAATATTCTCATTTAGTCTACTCACTACTGATCTCCGAGACATGGAAAGACAAAATAACTAACTATGATTATTTCTCACTTCAGAGGTGCCCGAGCAGCAGTGTGGGAGAACTTTAAAAACAATCCTCTCTTTGATATTTCTACTGAGCATCCAACTACTTACTATGAAGACATGCAGCGAGCCATCTTTTGCTTGTGCCCTCTAGGATGGGCACCATGGAGTCCGAGATTGGTTGAAGCAGTTATATTTGGATGCATCCCTGTTATTATAGCAGATGACATTGTCTTGCCATTTGCTGACGCAATCCCTTGGGAAGATATAGGCGTGTTTGTAGCAGAGAAAGATGTTCCAAATTTGGACACCATTCTCACTTCTATTCGACCAGAAGAAATATTAAGGAAGCAGAGACTGCTTGCCAATCCTTCAATGAAGCA</genome_strand>
        <mrna_strand>CGTTTCCTATTATCTAGCGCTGTTCGAACCTTTAATCCCGAGGAAGCAGATTGGTTCTACACCCCTGTTTACAGTACTTGTGACCTTACACCAAATGGCCTTCCTTTACCCTTCAAGTCACCACGTATGATGAGGAGTGCAATACAACTTATTTCTTCTAACTGGCCTTACTGGAATAGGACAGAGGGAGCTGATCACTTCTTTATTGTGCCACATGATTTTGGTGCTTGTTTTCACTATCAA...............................................................................................................................................................................................GAAGAAAAAGCTATTGAGAGGGGAATTCTTCCATTGCTCCAACGTGCTACCTTGGTTCAAACTTTTGGACAAAGAAATCATGTTTGTTTGAAGGATGGTTCAATTACAATTCCTCCATATGCTCCCCCACAGAAAATGCAGTCCCACTTGATCCCTCCAGATACTCCCCGGTCTATCTTTGTTTATTTCCGAGGCTTGTTTTATGATGTTGGAAATGATCCAGAGGGTGGTTACTATGCTAG.................................................................................................................................................................................................................................................AGGTGCCCGAGCAGCAGTGTGGGAGAACTTTAAAAACAATCCTCTCTTTGATATTTCTACTGAGCATCCAACTACTTACTATGAAGACATGCAGCGAGCCATCTTTTGCTTGTGCCCTCTAGGATGGGCACCATGGAGTCCGAGATTGGTTGAAGCAGTTATATTTGGATGCATCCCTGTTATTATAGCAGATGACATTGTCTTGCCATTTGCTGACGCAATCCCTTGGGAAGATATAGGCGTGTTTGTAGCAGAGAAAGATGTTCCAAATTTGGACACCATTCTCACTTCTATTCGACCAGAAGAAATATTAAGGAAGCAGAGACTGCTTGCCAATCCTTCAATGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740136" ref_strand="+" ref_description="SGN-E740136 [LC20BA02]">
      <seq>ctttcctattatctagcgctgttcgaacctttaatcccgaggaagcagattggttctacacccctgtttacagtacttgtgaccttacaccaaatggccttcctttacccttcaagtcaccacgtatgatgaggagtgcaatacaacttatttcttctaactggccttactggaataggacagagggagctgatcacttctttattgtgccacatgattttggtgcttgttttcactatcaagaagaaaaagctattgagaggggaattcttccattgctccaacgtgctaccttggttcaaacttttggacaaagaaatcatgtttgtttgaaggatggttcaattacaattcctccatatgctcccccacagaaaatgcagtcccacttgatccctccagatactccccggtctatctttgtttatttccgaggcttgttttatgatgttggaaatgatccagagggtggttactatgctagaggtgcccgagcagcagtgtgggagaactttaaaaacaatcctctctttgatatttctactgagcatccaactacttactatgaagacatgcagcgagccatcttttgcttgtgccctctaggatgggcaccatggagtccgagattggttgaagcagttatatttggatgcatccctgttattatagcagatgacattgtcttgccatttgctgacgcaatcccttgggaagatataggcgtgtttgtagcagagaaagatgttccaaatttggacaccattctcacttctattcgaccagaagaaatattaaggaagcagagactgcttgccaaatccttcatgaagcaggcaatgttgtttccaacacctgctcaatcaggtgatgcttttcatcagattttgaatggacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1562" stop="3492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1861" g_stop="2102" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2103" i_stop="2293" i_length="191">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2294" g_stop="2535" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="484" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2536" i_stop="2776" i_length="241">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2777" g_stop="3192" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="900" r_length="416" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E740136" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1861" e_stop="2102"/>
          <exon e_start="2294" e_stop="2535"/>
          <exon e_start="2777" e_stop="3192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCTATTATCTAGCGCTGTTCGAACCTTTAATCCCGAGGAAGCAGATTGGTTCTACACCCCTGTTTACAGTACTTGTGACCTTACACCAAATGGCCTTCCTTTACCCTTCAAGTCACCACGTATGATGAGGAGTGCAATACAACTTATTTCTTCTAACTGGCCTTACTGGAATAGGACAGAGGGAGCTGATCACTTCTTTATTGTGCCACATGATTTTGGTGCTTGTTTTCACTATCAAGTGAGTATCTCTCTCTTTCTCTCTATCATACACACACACTCACATAATTGGATAGAACCCACGGAAAGGTTACCAACAAATATCCCTTAGGTTCATGATTATCAGTTTTGTCATTTTCAACTCAATTTTTCAGTCATTTCTGTCAAGGGTGTTAAAGATGTTTTGGTTACATTGGTTTTGCGCCATTGCAGGAAGAAAAAGCTATTGAGAGGGGAATTCTTCCATTGCTCCAACGTGCTACCTTGGTTCAAACTTTTGGACAAAGAAATCATGTTTGTTTGAAGGATGGTTCAATTACAATTCCTCCATATGCTCCCCCACAGAAAATGCAGTCCCACTTGATCCCTCCAGATACTCCCCGGTCTATCTTTGTTTATTTCCGAGGCTTGTTTTATGATGTTGGAAATGATCCAGAGGGTGGTTACTATGCTAGGTATACCCATGACTCATGAATAAATCACTTGTTTTTTACACTAAAGCTACTTATCAAAAGGCCCTAGTATTGATGCTTAGTTAATTGATTTATTCATTGTGATTCTGGGAATGAATGAAGATTGTTTAAATAAATGATGACTGTAGAAGTTGACAAATAATATTCTCATTTAGTCTACTCACTACTGATCTCCGAGACATGGAAAGACAAAATAACTAACTATGATTATTTCTCACTTCAGAGGTGCCCGAGCAGCAGTGTGGGAGAACTTTAAAAACAATCCTCTCTTTGATATTTCTACTGAGCATCCAACTACTTACTATGAAGACATGCAGCGAGCCATCTTTTGCTTGTGCCCTCTAGGATGGGCACCATGGAGTCCGAGATTGGTTGAAGCAGTTATATTTGGATGCATCCCTGTTATTATAGCAGATGACATTGTCTTGCCATTTGCTGACGCAATCCCTTGGGAAGATATAGGCGTGTTTGTAGCAGAGAAAGATGTTCCAAATTTGGACACCATTCTCACTTCTATTCGACCAGAAGAAATATTAAGGAAGCAGAGACTGCTTGCCAA-TCCTTCAATGAAGCAGGCAATGTTGTTTCCAACACCTGCTCAATCAGGTGATGCTTTTCATCAGATTTTGAATGGACTTG</genome_strand>
        <mrna_strand>CTTTCCTATTATCTAGCGCTGTTCGAACCTTTAATCCCGAGGAAGCAGATTGGTTCTACACCCCTGTTTACAGTACTTGTGACCTTACACCAAATGGCCTTCCTTTACCCTTCAAGTCACCACGTATGATGAGGAGTGCAATACAACTTATTTCTTCTAACTGGCCTTACTGGAATAGGACAGAGGGAGCTGATCACTTCTTTATTGTGCCACATGATTTTGGTGCTTGTTTTCACTATCAA...............................................................................................................................................................................................GAAGAAAAAGCTATTGAGAGGGGAATTCTTCCATTGCTCCAACGTGCTACCTTGGTTCAAACTTTTGGACAAAGAAATCATGTTTGTTTGAAGGATGGTTCAATTACAATTCCTCCATATGCTCCCCCACAGAAAATGCAGTCCCACTTGATCCCTCCAGATACTCCCCGGTCTATCTTTGTTTATTTCCGAGGCTTGTTTTATGATGTTGGAAATGATCCAGAGGGTGGTTACTATGCTAG.................................................................................................................................................................................................................................................AGGTGCCCGAGCAGCAGTGTGGGAGAACTTTAAAAACAATCCTCTCTTTGATATTTCTACTGAGCATCCAACTACTTACTATGAAGACATGCAGCGAGCCATCTTTTGCTTGTGCCCTCTAGGATGGGCACCATGGAGTCCGAGATTGGTTGAAGCAGTTATATTTGGATGCATCCCTGTTATTATAGCAGATGACATTGTCTTGCCATTTGCTGACGCAATCCCTTGGGAAGATATAGGCGTGTTTGTAGCAGAGAAAGATGTTCCAAATTTGGACACCATTCTCACTTCTATTCGACCAGAAGAAATATTAAGGAAGCAGAGACTGCTTGCCAAATCCTTC-ATGAAGCAGGCAATGTTGTTTCCAACACCTGCTCAATCAGGTGATGCTTTTCATCAGATTTTGAATGGACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580077" ref_strand="+" ref_description="SGN-E580077 [5320]">
      <seq>aaaaacaatcctctctttgatatttctactgagcatccaactacttactatgaagacatgcagcgagctatcttttgcttgtgccctctaggatgggcaccatggagtccgagattggttgaagcagttatatttggatgcatccctggttattatagcagatgacattgtcttgccatttgctgacgcaatcccctgggaagatataggcgtatttgtagcagagaaagatgttccaaatttggacaccattctcacttctattcgaccagaagaaatattgaggaagcagagactgcttgccaatccttctatgaagcaggcaatgttatttccaacacctgcccaatcaggtgatgctttccatcagatcttgaatggacttgcgcgtaaactgccacatgacaagagcacttacctgaagcccggggagaagtccttaaactggactgctggtccagttggtgacctcaaaacttggtagaggctggctcttgacggatcatttcaactcttttgttgggtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2508" stop="3628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2808" g_stop="3303" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E580077" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E580077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2808" e_stop="3303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAATCCTCTCTTTGATATTTCTACTGAGCATCCAACTACTTACTATGAAGACATGCAGCGAGCCATCTTTTGCTTGTGCCCTCTAGGATGGGCACCATGGAGTCCGAGATTGGTTGAAGCAGTTATATTTGGATGCATCCCT-GTTATTATAGCAGATGACATTGTCTTGCCATTTGCTGACGCAATCCCTTGGGAAGATATAGGCGTGTTTGTAGCAGAGAAAGATGTTCCAAATTTGGACACCATTCTCACTTCTATTCGACCAGAAGAAATATTAAGGAAGCAGAGACTGCTTGCCAATCCTTCAATGAAGCAGGCAATGTTGTTTCCAACACCTGCTCAATCAGGTGATGCTTTTCATCAGATTTTGAATGGACTTGCACGGAAACTGCCACATGACAAGACCAATTACTTGAAGCCGGGGGAGAAGTCCTTAAACTGGACTGCTGGTCCAGTTGGTGACCTCAAACCTTGGTAGAGGCTGGCTCTTG</genome_strand>
        <mrna_strand>AAAAACAATCCTCTCTTTGATATTTCTACTGAGCATCCAACTACTTACTATGAAGACATGCAGCGAGCTATCTTTTGCTTGTGCCCTCTAGGATGGGCACCATGGAGTCCGAGATTGGTTGAAGCAGTTATATTTGGATGCATCCCTGGTTATTATAGCAGATGACATTGTCTTGCCATTTGCTGACGCAATCCCCTGGGAAGATATAGGCGTATTTGTAGCAGAGAAAGATGTTCCAAATTTGGACACCATTCTCACTTCTATTCGACCAGAAGAAATATTGAGGAAGCAGAGACTGCTTGCCAATCCTTCTATGAAGCAGGCAATGTTATTTCCAACACCTGCCCAATCAGGTGATGCTTTCCATCAGATCTTGAATGGACTTGCGCGTAAACTGCCACATGACAAGAGCACTTACCTGAAGCCCGGGGAGAAGTCCTTAAACTGGACTGCTGGTCCAGTTGGTGACCTCAAAACTTGGTAGAGGCTGGCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548828" ref_strand="+" ref_description="SGN-E548828 [TUS-64-M18](-)">
      <seq>gaagacatgcagcgagccatcttttgcttgtgccttataggatgggcaccatggagtccgagattggttgaagcagttatattaggatgcatccatgttattatagcagatgacattgtcttgctatttgctgaggcaatcccttgggaagatataggagtgtttgtagcagagaaagatgttccaaatttggacaccattctcagttttattcgaccagaagaaatattaaggaagcagagattgcttgccaatccttcaatgaagcaggcaatgttgtttccaacacctgctcaatcaggtgatgcttttcatcagattttgaatggacttgcagggaaactgccacatgacaagaccaattacttgaagccgggggagaagtccttaaactggactgctggtccagttggtgacctcaaaccttggtagaggctggctcttggtgatgattccactcttctgtttggcaccaaaacatttttctgtgccaaacttgcttaattcatctgagttgtaaattttaaccatgtagtccatgttcatatttggatcagtagggctacgcattagagatatgggtatgttcacttgcatattggtgtccttgtgatattaggacattgtcaaaattttattcagtttttgtgttggttcaacatgcaaggttatttcagcatgtaagcattattagtaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2559" stop="3858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2859" g_stop="3565" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E548828" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2859" e_stop="3565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACATGCAGCGAGCCATCTTTTGCTTGTGCCCTCTAGGATGGGCACCATGGAGTCCGAGATTGGTTGAAGCAGTTATATTTGGATGCATCCCTGTTATTATAGCAGATGACATTGTCTTGCCATTTGCTGACGCAATCCCTTGGGAAGATATAGGCGTGTTTGTAGCAGAGAAAGATGTTCCAAATTTGGACACCATTCTCACTTCTATTCGACCAGAAGAAATATTAAGGAAGCAGAGACTGCTTGCCAATCCTTCAATGAAGCAGGCAATGTTGTTTCCAACACCTGCTCAATCAGGTGATGCTTTTCATCAGATTTTGAATGGACTTGCACGGAAACTGCCACATGACAAGACCAATTACTTGAAGCCGGGGGAGAAGTCCTTAAACTGGACTGCTGGTCCAGTTGGTGACCTCAAACCTTGGTAGAGGCTGGCTCTTGGTGATGATTCCACTCTTCTGTTTGGCACCAAAACCTTCTTCTGTGCCAAACTTGCTTAATTCATCTGAGTTGTAAATTTTAACCATGTAGTCCATGTTCATATTTGGATCAGTAGGGCTCTGCATTAGAGATATGGGTATGTTCACTTGCCTATTCGTGTCCTTGTGATATTAGGACATTGTCAAAATTTTATTCAGTTTTTGTGTTGCTTCAACATGCAAGGTTATTTCAGCATCTAAGCATTCTTAGTTACAAGCTTATG</genome_strand>
        <mrna_strand>GAAGACATGCAGCGAGCCATCTTTTGCTTGTGCCTTATAGGATGGGCACCATGGAGTCCGAGATTGGTTGAAGCAGTTATATTAGGATGCATCCATGTTATTATAGCAGATGACATTGTCTTGCTATTTGCTGAGGCAATCCCTTGGGAAGATATAGGAGTGTTTGTAGCAGAGAAAGATGTTCCAAATTTGGACACCATTCTCAGTTTTATTCGACCAGAAGAAATATTAAGGAAGCAGAGATTGCTTGCCAATCCTTCAATGAAGCAGGCAATGTTGTTTCCAACACCTGCTCAATCAGGTGATGCTTTTCATCAGATTTTGAATGGACTTGCAGGGAAACTGCCACATGACAAGACCAATTACTTGAAGCCGGGGGAGAAGTCCTTAAACTGGACTGCTGGTCCAGTTGGTGACCTCAAACCTTGGTAGAGGCTGGCTCTTGGTGATGATTCCACTCTTCTGTTTGGCACCAAAACATTTTTCTGTGCCAAACTTGCTTAATTCATCTGAGTTGTAAATTTTAACCATGTAGTCCATGTTCATATTTGGATCAGTAGGGCTACGCATTAGAGATATGGGTATGTTCACTTGCATATTGGTGTCCTTGTGATATTAGGACATTGTCAAAATTTTATTCAGTTTTTGTGTTGGTTCAACATGCAAGGTTATTTCAGCATGTAAGCATTATTAGTAAAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744544" ref_strand="+" ref_description="SGN-E744544 [GI|399599]">
      <seq>actgaagccggggagagccttaaactggactgctggccagttggtgacctcaaaccttggtagaggcggctcttggtgagatccactcttctgttgggcaccaaaacctcttctgtgccaacttgcttaattcatctgagtgtaaaatttttaaccatgtagtccatgttcatatttggatcagtagggctctgcattagagatatgggtatgttcacttgcctattcgtgtccttgtgatattaggacattgtcaaaattttattcagtttttgtgttgcttcaacatgcaaggttatttcagcatctaagcattcttagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2923" stop="3854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3223" g_stop="3554" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E744544" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.028" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3223" e_stop="3554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGAAGCCGGGGGAGAAGTCCTTAAACTGGACTGCTGGTCCAGTTGGTGACCTCAAACCTTGGTAGAGGCTGGCTCTTGGTGATGATTCCACTCTTCTGTTTGGCACCAAAACCTTCTTCTGTGCCAAACTTGCTTAATTCATCTGAGT-TGTAAATTTTAACCATGTAGTCCATGTTCATATTTGGATCAGTAGGGCTCTGCATTAGAGATATGGGTATGTTCACTTGCCTATTCGTGTCCTTGTGATATTAGGACATTGTCAAAATTTTATTCAGTTTTTGTGTTGCTTCAACATGCAAGGTTATTTCAGCATCTAAGCATTCTTAGTT</genome_strand>
        <mrna_strand>AC-TGAAGCC-GGGGAG-AG-CCTTAAACTGGACTGCTGG-CCAGTTGGTGACCTCAAACCTTGGTAGAGGC-GGCTCTTGGTGA-GA-TCCACTCTTCTGTTGGGCACCAAAACC-TCTTCTGTGCC-AACTTGCTTAATTCATCTGAGTGTAAAATTTTTAACCATGTAGTCCATGTTCATATTTGGATCAGTAGGGCTCTGCATTAGAGATATGGGTATGTTCACTTGCCTATTCGTGTCCTTGTGATATTAGGACATTGTCAAAATTTTATTCAGTTTTTGTGTTGCTTCAACATGCAAGGTTATTTCAGCATCTAAGCATTCTTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209278" ref_strand="-" ref_description="SGN-E209278 [cLEC-53-B13]">
      <seq>catgcctgggatagaggctttgatgatgatggcaatcaagtttggggtgtaaaaggaggtccttatgaattcaagcctgctccttcttcaagttttaacgatgtgctaaatcgtttaagttcttcttcacaaggcctggggaaaagaatagaaggctcatttgtcctccaggaatgatttcttgttatataatccccccaccccaactgcccacatcttgtaaatcataactcaattagtattatgtttaaattatagtaaatcataaggtgttttatatttcaaagctaactgttttctgatgatagttctgatctttctctgagaatgcctgagagaattttgcagaaacggtaatcaccgcttgaattaagattgatgtttgtcatgtatggctgatatagtgttattgagagaatttgctcgtgcccaaacaagancgtgaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4899" stop="3749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4599" g_stop="4561" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4431" g_stop="4049" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="422" r_length="383" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E209278" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209278" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4599" e_stop="4561"/>
          <exon e_start="4431" e_stop="4049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAAGTTAGTTCCATATGCTACGTACTTGTTTTTTCCTTAAAAGTTATAACCTGTCTTGTGAATCTTGTCTCGATTATATATCCATTTATTTGAAACCTCTGACAAGGCTTGTTTGCCTTCCAAATGTTACAGGTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCTTGTTATATAATCCCCCCACCCCAACTGCCCACATCTTGTAAATCATAACTCAATTAGTATTATGTTTAAATTATAGTAAATCATAAGGTGTTTTATATTTCAAAGCTAACTGTTTTCTGATGATAGTTCTGATCTTTCTCTGAGAATGCCTGAGAGAATTTTGCAGAAACGGTAATCACCGCTTGAATTAAGATTGATGTTTGTCATGTATGACTGATATAGTGTTATTGAGAGAATTTG</genome_strand>
        <mrna_strand>CATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAA.................................................................................................................................GTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCGTTTAAGTTCTTCTTCACAAGGCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCTTGTTATATAATCCCCCCACCCCAACTGCCCACATCTTGTAAATCATAACTCAATTAGTATTATGTTTAAATTATAGTAAATCATAAGGTGTTTTATATTTCAAAGCTAACTGTTTTCTGATGATAGTTCTGATCTTTCTCTGAGAATGCCTGAGAGAATTTTGCAGAAACGGTAATCACCGCTTGAATTAAGATTGATGTTTGTCATGTATGGCTGATATAGTGTTATTGAGAGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213566" ref_strand="-" ref_description="SGN-E213566 [cLEC-71-D6]">
      <seq>agagattttcatgggtcaagccttgtgcaaaggagttgaaatgtgatgtgagtttaagcacatatgctatcagagatgcagaggagtacaagactttttgtgatcgccctagggatcagcgtccacancccgaagaagttattggggacattgctgaccatttgactaccattcatctaaagcgctgtgagcgtgggaaacggtgcttgtatgaaggttcaacacctgcagatggatttcctaattcatggcagaatggtgcgacatactgtacctcagaacttgctgtgttaaagaataatgagatacatgcctgggatagaggctttgatgatgatggcaatcaagtttggggtgtaaaaggaggtccttatgaattcaagcctgctccttcttcaagttttaacgatgtgctaaatcctttgagttttgcttcacaacccctggggaaaagaatagaaggctcatttgtcctccaggaatgatttcttgttatataatccccccaccccaactgcccacatcttgtaaatcataactcaattagtattatgtttaaattatagtaaatcataaggtgttttatatttcaaagctaactgttttctgatgatagttctgatctttctctgagaatgcctgagagaattttgcagaaacggtaatcaccgcttgaattaagattgatgtttgtcatgtatgactgatatagtgttattgagagaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6157" stop="3750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5857" g_stop="5805" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.849"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="0.84"/>
            <acceptor a_prob="0.769" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="146" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="251" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4765" i_stop="4657" i_length="109">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4656" g_stop="4561" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="347" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4431" g_stop="4050" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="729" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E213566" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213566" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5857" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4656" e_stop="4561"/>
          <exon e_start="4431" e_stop="4050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAAGTTAGTTCCATATGCTACGTACTTGTTTTTTCCTTAAAAGTTATAACCTGTCTTGTGAATCTTGTCTCGATTATATATCCATTTATTTGAAACCTCTGACAAGGCTTGTTTGCCTTCCAAATGTTACAGGTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCTTGTTATATAATCCCCCCACCCCAACTGCCCACATCTTGTAAATCATAACTCAATTAGTATTATGTTTAAATTATAGTAAATCATAAGGTGTTTTATATTTCAAAGCTAACTGTTTTCTGATGATAGTTCTGATCTTTCTCTGAGAATGCCTGAGAGAATTTTGCAGAAACGGTAATCACCGCTTGAATTAAGATTGATGTTTGTCATGTATGACTGATATAGTGTTATTGAGAGAATTT</genome_strand>
        <mrna_strand>AGAGATTTTCATGGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTGAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGACTTTTTGTGATCGCCCTAGGGATCAGCGTCCACANCCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GACATTGCTGACCATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG.............................................................................................................CAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAA.................................................................................................................................GTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCTTGTTATATAATCCCCCCACCCCAACTGCCCACATCTTGTAAATCATAACTCAATTAGTATTATGTTTAAATTATAGTAAATCATAAGGTGTTTTATATTTCAAAGCTAACTGTTTTCTGATGATAGTTCTGATCTTTCTCTGAGAATGCCTGAGAGAATTTTGCAGAAACGGTAATCACCGCTTGAATTAAGATTGATGTTTGTCATGTATGACTGATATAGTGTTATTGAGAGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260844" ref_strand="+" ref_description="SGN-E260844 [cLEG-55-G11]">
      <seq>gagttgaaatgtgatgttgagttaagcacatatgctatcagagatgcagaggagtacaagaacttttgtgatcgccctagggatcagcgtccacaacccgaagaagttattggggacattgctgaacatttgactaccattcatctaaagcgctgtgagcgtgggaaacggtgcttgtatgaaggttcaacacctgcagatggatttcctaattcatggaatggtgcgacatactgtacctcagaacttgctgtgttaaagaataatgagatacatgcctgggatagaggctttgatgatgatggcaatcaagtttggggtgtaaaaggaggtccttatgaattcaagcctgctccttcttcaagttttaacgatgtgctaaatcctttgagttttgcttcacaacccctggggaaaagaatagaaggctcatttgtcctccaggaatgatttcttgttatataatccccccaccccaactgcccacatcttgtaaatcataactcaattagtattatgtttaaattatagtaaatcataaggtgttttatatttcaaagctaactgttttctgatgatagttctgatctttctctgagaatgcctgagagaattttgcagaaacggtaatcaccgcttgaattaagattgatgtttgtcatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6125" stop="3779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5825" g_stop="5805" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="114" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="219" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4765" i_stop="4654" i_length="112">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4653" g_stop="4561" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="312" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4431" g_stop="4070" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="674" r_length="362" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E260844" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5825" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4653" e_stop="4561"/>
          <exon e_start="4431" e_stop="4070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAAGTTAGTTCCATATGCTACGTACTTGTTTTTTCCTTAAAAGTTATAACCTGTCTTGTGAATCTTGTCTCGATTATATATCCATTTATTTGAAACCTCTGACAAGGCTTGTTTGCCTTCCAAATGTTACAGGTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCTTGTTATATAATCCCCCCACCCCAACTGCCCACATCTTGTAAATCATAACTCAATTAGTATTATGTTTAAATTATAGTAAATCATAAGGTGTTTTATATTTCAAAGCTAACTGTTTTCTGATGATAGTTCTGATCTTTCTCTGAGAATGCCTGAGAGAATTTTGCAGAAACGGTAATCACCGCTTGAATTAAGATTGATGTTTGTCATGTATGACTGATA</genome_strand>
        <mrna_strand>GAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG................................................................................................................AATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAA.................................................................................................................................GTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCTTGTTATATAATCCCCCCACCCCAACTGCCCACATCTTGTAAATCATAACTCAATTAGTATTATGTTTAAATTATAGTAAATCATAAGGTGTTTTATATTTCAAAGCTAACTGTTTTCTGATGATAGTTCTGATCTTTCTCTGAGAATGCCTGAGAGAATTTTGCAGAAACGGTAATCACCGCTTGAATTAAGATTGATGTTTGTCATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373467" ref_strand="-" ref_description="SGN-E373467 [TUS-31-N22]">
      <seq>agttaagcacatatgctatcagagatgcagaggagtacaagaacttttgtgatcgccctagggatcagcgtccacaacccgaagaagttattggggacattgctgaacatttgactaccattcatctaaagcgctgtgagcgtgggaaacggtgcttgtatgaaggttcaacacctgcagatggatttcctaattcatggcagaatggtgcgacatactgtacctcagaacttgctgtgttaaagaataatgagatacatgcctgggatagaggctttgatgatgatggcaatcaagtttggggtgtaaaaggaggtccttatgaattcaagcctgctccttcttcaagttttaacgatgtgctaaatcctttgagttttgcttcacaacccctggggaaaagaatagaaggctcatttgtcctccaggaatgatttcttgttatataatccccccaccccaactgcccacatcttgtaaatcataactcaattagtattatgtttaaattatagtaaatcataaggtgttttatatttcaaagctaactgttttctgatgatagttctgatctttctctgagaatgcctgagagaattttgcagaaacggtaatcaccgcttgaattaagattgatgtttgtcatgtaaaaaaaaaaaaaaaaaactggagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5554" stop="3779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5254" g_stop="5160" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="200" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4765" i_stop="4657" i_length="109">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4656" g_stop="4561" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="296" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4431" g_stop="4080" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="648" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="649" polyA_stop="667"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E373467" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373467" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5254" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4656" e_stop="4561"/>
          <exon e_start="4431" e_stop="4080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAAGTTAGTTCCATATGCTACGTACTTGTTTTTTCCTTAAAAGTTATAACCTGTCTTGTGAATCTTGTCTCGATTATATATCCATTTATTTGAAACCTCTGACAAGGCTTGTTTGCCTTCCAAATGTTACAGGTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCTTGTTATATAATCCCCCCACCCCAACTGCCCACATCTTGTAAATCATAACTCAATTAGTATTATGTTTAAATTATAGTAAATCATAAGGTGTTTTATATTTCAAAGCTAACTGTTTTCTGATGATAGTTCTGATCTTTCTCTGAGAATGCCTGAGAGAATTTTGCAGAAACGGTAATCACCGCTTGAATTAAGATTGATGTTTGTCATGT</genome_strand>
        <mrna_strand>AGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG.............................................................................................................CAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAA.................................................................................................................................GTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCTTGTTATATAATCCCCCCACCCCAACTGCCCACATCTTGTAAATCATAACTCAATTAGTATTATGTTTAAATTATAGTAAATCATAAGGTGTTTTATATTTCAAAGCTAACTGTTTTCTGATGATAGTTCTGATCTTTCTCTGAGAATGCCTGAGAGAATTTTGCAGAAACGGTAATCACCGCTTGAATTAAGATTGATGTTTGTCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373907" ref_strand="-" ref_description="SGN-E373907 [TUS-31-O22]">
      <seq>cacatatgctatcagagatgcagaggagtacaagaacttttgtgatcgccctagggatcagcgtccacaacccgaagaagttattggggacattgctgaacatttgactaccattcatataaagcgctgtgagcgtgggaaacggtgcttgtatgaaggttcaacacctgcagatggatttcctaattcatggcagaatggtgcgacatactgtacctcagaacttgctgtgttaaagaataatgagatacatgcctgggatagaggctttgatgatgatggcaatcaagtttggggtgtaaaaggaggtccttatgaattcaagcctgctccttcttcaagttttaacgatgtgctaaatcctttgagttttgcttcacaacccctggggaaaagaatagaaggctcatttgtcctccaggaatgatttcttgttatataatccccccaccccaactgcccacatcttgtaaatcataactcaattagtattatgtttaaattatagtaaatcataaggtgttttatatttcaaagctaactgttttctgatgatagttctgatctttctctgagaatgcctgagagaattttgcagaaacggtaatcaccgcttgaattaagattgatgtttgtcatgtaaaaaaaaaaaaaaaaaactggagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5547" stop="3779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5247" g_stop="5160" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="193" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4765" i_stop="4657" i_length="109">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4656" g_stop="4561" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="289" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4431" g_stop="4080" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="641" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="642" polyA_stop="660"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E373907" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373907" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5247" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4656" e_stop="4561"/>
          <exon e_start="4431" e_stop="4080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAAGTTAGTTCCATATGCTACGTACTTGTTTTTTCCTTAAAAGTTATAACCTGTCTTGTGAATCTTGTCTCGATTATATATCCATTTATTTGAAACCTCTGACAAGGCTTGTTTGCCTTCCAAATGTTACAGGTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCTTGTTATATAATCCCCCCACCCCAACTGCCCACATCTTGTAAATCATAACTCAATTAGTATTATGTTTAAATTATAGTAAATCATAAGGTGTTTTATATTTCAAAGCTAACTGTTTTCTGATGATAGTTCTGATCTTTCTCTGAGAATGCCTGAGAGAATTTTGCAGAAACGGTAATCACCGCTTGAATTAAGATTGATGTTTGTCATGT</genome_strand>
        <mrna_strand>CACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GACATTGCTGAACATTTGACTACCATTCATATAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG.............................................................................................................CAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAA.................................................................................................................................GTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCTTGTTATATAATCCCCCCACCCCAACTGCCCACATCTTGTAAATCATAACTCAATTAGTATTATGTTTAAATTATAGTAAATCATAAGGTGTTTTATATTTCAAAGCTAACTGTTTTCTGATGATAGTTCTGATCTTTCTCTGAGAATGCCTGAGAGAATTTTGCAGAAACGGTAATCACCGCTTGAATTAAGATTGATGTTTGTCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746795" ref_strand="+" ref_description="SGN-E746795 [GI|47104487]">
      <seq>tgaggcaacatttatacaaattactccattttcagtagtacagattttgcagaaagctgacaagcacaagctaagatgatttatcggttaaatgatctgctgttgaagagtccactttaagtattaaatcgccggcatgtgtacgggctcggactcgggtttgggttcggattctaagtcggatcccgactcaaacgggtggagccgagctcgtggagcggttctcaagtcgctggtgctcgtcggaggagccttattgctccggcggctaactaagtcgactacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagctgctagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccacacaaaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgagttaagcacatatgctatcagagatgcagaggagtacaagaacttttgtgatcgccctagggatcagcgtccacaacccgaagaagttattggggacattgctgaacatttgactaccattcatctaaagcgctgtgagcgtgggaaacggtgcttgtatgaaggttcaacacctgcagatggatttcctaattcatggaatggtgcgacatactgtacctcagaacttgctgtgttaaagaataatgagatacatgcctgggatagaggctttgatgatgatggcaatcaagtttggggtgtaaaaggaggtccttatgaattcaagcctgctccttcttcaagttttaacgatgtgctaaatcctttgagttttgcttcacaacccctggggaaaagaatagaaggctcatttgtcctccaggaatgatttcttgttatataatccccccaccccaactgcccacatcttgtaaatcataactcaattagtattatgtttaaattatagtaaatcataaggtgttttatatttcaaagctaactgttttctgatgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7801" stop="3864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7501" g_stop="7168" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="384" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="445" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="481" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="532" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="625" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="730" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4765" i_stop="4654" i_length="112">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4653" g_stop="4561" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="823" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4431" g_stop="4164" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="824" r_stop="1091" r_length="268" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1092" polyA_stop="1103"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E746795" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1091</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7501" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4653" e_stop="4561"/>
          <exon e_start="4431" e_stop="4164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGCAACATTTATACAAATTACTCCATTTTCAGTAGTACAGATTTTGCAGAAAGCTGACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAAGTTAGTTCCATATGCTACGTACTTGTTTTTTCCTTAAAAGTTATAACCTGTCTTGTGAATCTTGTCTCGATTATATATCCATTTATTTGAAACCTCTGACAAGGCTTGTTTGCCTTCCAAATGTTACAGGTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCTTGTTATATAATCCCCCCACCCCAACTGCCCACATCTTGTAAATCATAACTCAATTAGTATTATGTTTAAATTATAGTAAATCATAAGGTGTTTTATATTTCAAAGCTAACTGTTTTCTGATGATA</genome_strand>
        <mrna_strand>TGAGGCAACATTTATACAAATTACTCCATTTTCAGTAGTACAGATTTTGCAGAAAGCTGACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAATCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCACACAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG................................................................................................................AATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAA.................................................................................................................................GTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCTTGTTATATAATCCCCCCACCCCAACTGCCCACATCTTGTAAATCATAACTCAATTAGTATTATGTTTAAATTATAGTAAATCATAAGGTGTTTTATATTTCAAAGCTAACTGTTTTCTGATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733758" ref_strand="+" ref_description="SGN-E733758 [LB10DE01]">
      <seq>cgctaccattcatctaaagcgctgtgagcgtgggaaacggtgcttgtatgaaggttcaacacctgcagatggatttcctaattcatggaatggtgcgacatactgtacctcagaacttgctgtgttaaagaataatgagatacatgcctgggatagaggctttgatgatgatggcaatcaagtttggggtgtaaaaggaggtccttatgaattcaagcctgctccttcttcaagttttaacgatgtgctaaatcctttgagttttgcttcacaacccctggggaaaagaatagaaggctcatttgtcctccaggaatgatttcttgttatataatccccccaccccaactgcccacatcttgtaaatcataactcaattagtattatgtttaaattatagtaaatcataaggtgttttatatttcaaagctaactgttttctgatgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5151" stop="3864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4853" g_stop="4766" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4765" i_stop="4654" i_length="112">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4653" g_stop="4561" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="181" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4431" g_stop="4164" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="449" r_length="268" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="462"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E733758" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4853" e_stop="4766"/>
          <exon e_start="4653" e_stop="4561"/>
          <exon e_start="4431" e_stop="4164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAAGTTAGTTCCATATGCTACGTACTTGTTTTTTCCTTAAAAGTTATAACCTGTCTTGTGAATCTTGTCTCGATTATATATCCATTTATTTGAAACCTCTGACAAGGCTTGTTTGCCTTCCAAATGTTACAGGTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCTTGTTATATAATCCCCCCACCCCAACTGCCCACATCTTGTAAATCATAACTCAATTAGTATTATGTTTAAATTATAGTAAATCATAAGGTGTTTTATATTTCAAAGCTAACTGTTTTCTGATGATA</genome_strand>
        <mrna_strand>CGCTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG................................................................................................................AATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAA.................................................................................................................................GTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCTTGTTATATAATCCCCCCACCCCAACTGCCCACATCTTGTAAATCATAACTCAATTAGTATTATGTTTAAATTATAGTAAATCATAAGGTGTTTTATATTTCAAAGCTAACTGTTTTCTGATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735899" ref_strand="+" ref_description="SGN-E735899 [LC03CD02]">
      <seq>cgataaagctgacaagcacaagctaagatgatttatcggttaaatgatctgctgttgaagagtccactttaagtattaaagcgccggcatgtgtacgggctcggactcgggtttgggttcggattctaagtcggatcccgactcaaacgggtggagccgagctcgtggagcggttctcaagtcgctggtgctcgtcggaggagccttattgctccggcggctaactaagtcgactacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagctgctagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccacacaaaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgagttaagcacatatgctatcagagatgcagaggagtacaagaacttttgtgatcgccctagggatcagcgtccacaacccgaagaagttattggggacattgctgaacatttgactaccattcatctaaagcgctgtgagcgtgggaaacggtgcttgtatgaaggttcaacacctgcagatggatttcctaattcatggaatggtgcgacatactgtacctcagaacttgctgtgttaaagaataatgagatacatgcctgggatagaggctttgatgatgatggcaatcaagtttggggtgtaaaaggaggtccttatgaattcaagcctgctccttcttcaagttttaacgatgtgctaaatccctttgagttttgcttccaacccctggggaaaagaatagaaggctcatttgtcctcccagaatgaatttctgttatttaatcccccccacccaactgcccaaatcttgtaaatcttaactcaattagtattatggtttaattatagtaaatcataaggggttttaaatttcaaagcctaatgtgtttctgatgaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7751" stop="3864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7453" g_stop="7168" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="336" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="397" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="433" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="484" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="577" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="682" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4765" i_stop="4654" i_length="112">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4653" g_stop="4561" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="775" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4431" g_stop="4167" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="776" r_stop="1041" r_length="266" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1042" polyA_stop="1055"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E735899" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>1040</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7453" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4653" e_stop="4561"/>
          <exon e_start="4431" e_stop="4167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAAGCTGACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAAGTTAGTTCCATATGCTACGTACTTGTTTTTTCCTTAAAAGTTATAACCTGTCTTGTGAATCTTGTCTCGATTATATATCCATTTATTTGAAACCTCTGACAAGGCTTGTTTGCCTTCCAAATGTTACAGGTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAAT-CCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCTTGTTATATAATCCCCCCACCCCAACTGCCCACATCTTGTAAATCATAACTCAATTAGTATTATGTTTAAATTATAGTAAATCATAAGGTGTTTTATATTTCAAAGCTAACTGT-TTTCTGATG</genome_strand>
        <mrna_strand>CGATAAAGCTGACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCACACAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG................................................................................................................AATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAA.................................................................................................................................GTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCCTTTGAGTTTTGCTTC-CAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCCAGAATGAATTTCTGTTATTTAATCCCCCCCACCCAACTGCCCAAATCTTGTAAATCTTAACTCAATTAGTATTATGGTTTAATTATAGTAAATCATAAGGGGTTTTAAATTTCAAAGCCTAATGTGTTTCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258583" ref_strand="-" ref_description="SGN-E258583 [cLEG-47-F22]">
      <seq>cgcagagtcacttaacgtgaaaagtttcaaaaggagcaagctgctagggatcntgataatatttttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatatttgagcaggcattttgcgaacaccacacaaaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgtgagtttaagcacatatgctatcagagatgcagaggagtacaagaacttttgtgatcgccctagggatcagcgtccacaacccgaagaagttattggggacattgctgaacatttgactaccattcatctaaagcgctgtgagcgtgggaaacggtgcttgtatgaaggttcaacacctgcagatggatttcctaattcatggaatggtgcgacatactgtacctcagaacttgctgtgttaaagaataatgagatacatgcctgggatagaggctttgatgatgatggcaatcaagtttggggtgtaaaaggaggtccttatgaattcaagcctgctccttcttcaagttttaacgatgtgctaaatcctttgagttttgcttcacaacccctggggaaaagaatagaaggctcatttgtcctccaggaatgatttcttgttatataatccccccaccccaactgcccacatcttgtaaatcataactcaattagtattatgtttaaattatagtaaatcataaggtgttttatatttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7492" stop="3885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7192" g_stop="7168" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.927" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="74" r_length="50" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="134" r_length="60" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="169" r_length="35" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="219" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.769" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="313" r_length="94" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="418" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4765" i_stop="4654" i_length="112">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4653" g_stop="4561" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="511" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4431" g_stop="4179" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="764" r_length="253" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E258583" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258583" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7192" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4653" e_stop="4561"/>
          <exon e_start="4431" e_stop="4179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAG-TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAAGTTAGTTCCATATGCTACGTACTTGTTTTTTCCTTAAAAGTTATAACCTGTCTTGTGAATCTTGTCTCGATTATATATCCATTTATTTGAAACCTCTGACAAGGCTTGTTTGCCTTCCAAATGTTACAGGTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCTTGTTATATAATCCCCCCACCCCAACTGCCCACATCTTGTAAATCATAACTCAATTAGTATTATGTTTAAATTATAGTAAATCATAAGGTGTTTTATATTTCAAAGCTAAC</genome_strand>
        <mrna_strand>CGCAGAGTCACTTAAC-GTGAAAAG...................................................................................................TTTCAAAAGGAGCAAGCTGCTAGGGATCNTGATAATATTTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATA-TTTGAGCAG............................................................................................GCATTTT-GCGAACACCACACAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATG-TGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG................................................................................................................AATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAA.................................................................................................................................GTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCTTGTTATATAATCCCCCCACCCCAACTGCCCACATCTTGTAAATCATAACTCAATTAGTATTATGTTTAAATTATAGTAAATCATAAGGTGTTTTATATTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346510" ref_strand="+" ref_description="SGN-E346510 [cTOF-23-P14]">
      <seq>gctgctagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccacacaaaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgagttaagcacatatgctatcagagatgcagaggagtacaagaacttttgtgatcgccctagggatcagcgtccacaacccgaagaagttattggggacattgctgaacatttgactaccattcatctaaagcgctgtgagcgtgggaaacggtgcttgtatgaaggttcaacacctgcagatggatttcctaattcatggaatggtgcgacatactgtacctcagaacttgctgtgttaaagaataatgagatacatgcctgggatagaggctttgatgatgatggcaatcaagtttggggtgtaaaaggaggtccttatgaattcaagcctgctccttcttcaagttttaacgatgtgctaaatcctttgagttttgcttcacaacccctggggaaaagaatagaagctcatttgtcctccaggaatgatttcttgttatataatccccccaccccactgcccacatcttgtaaatcataactcaattagtattatgttttaattatagtaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7353" stop="3908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7053" g_stop="7019" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="96" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="132" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="183" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="276" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="381" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4765" i_stop="4654" i_length="112">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4653" g_stop="4561" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="474" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4431" g_stop="4208" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="696" r_length="222" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E346510" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7053" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4653" e_stop="4561"/>
          <exon e_start="4431" e_stop="4208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAAGTTAGTTCCATATGCTACGTACTTGTTTTTTCCTTAAAAGTTATAACCTGTCTTGTGAATCTTGTCTCGATTATATATCCATTTATTTGAAACCTCTGACAAGGCTTGTTTGCCTTCCAAATGTTACAGGTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCTTGTTATATAATCCCCCCACCCCAACTGCCCACATCTTGTAAATCATAACTCAATTAGTATTATGTTTAAATTATAGTAAAT</genome_strand>
        <mrna_strand>GCTGCTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCACACAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG................................................................................................................AATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAA.................................................................................................................................GTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAA-GCTCATTTGTCCTCCAGGAATGATTTCTTGTTATATAATCCCCCCACCCC-ACTGCCCACATCTTGTAAATCATAACTCAATTAGTATTATGTTTTAATTATAGTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727199" ref_strand="+" ref_description="SGN-E727199 [LA14AB02]">
      <seq>gaggggttaaatgatctgctgttgaagagtccactttaagtattaaagcgccggcatgtgtacgggctcggactcgggtttgggttcggattctaagtcggatcccgactcaaacgggtggagccgagctcgtggagcggttctcaagtcgctggtgctcgtcggaggagccttattgctccggcggctaactaagtcgactacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagctgctagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccacacaaaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgagttaagcacatatgctatcagagatgcagaggagtacaagaacttttgtgatcgccctagggatcagcgtccacaacccgaagaagttattggggacattgctgaacatttgactaccattcatctaaagcgctgtgagcgtgggaaacggtgcttgtatgaaggttcaacacctgcagatggatttcctaattcatggaatggtgcgacatactgtacctcagaacttgctgtgttaaagaataatgagatacatgcctgggatagaggctttgatgatgatggcaatcaagtttggggtgtaaaaggaggtccttatgaattcaagcctgctccttcttcaagttttaacgatgtgctaaatcctttgagttttgcttcacaacccctggggaaaagaatagaaggctcatttgtcctccaggaatgattttctgttatataatccccccacccccactgcccacatcttgtaaatcattactcaattaagtattatggtttaaattataggaaaatcctaagggggttttatattttcaagcctacttgtttttctgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7716" stop="3864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7420" g_stop="7168" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="303" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="364" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="400" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="451" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="544" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="649" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4765" i_stop="4654" i_length="112">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4653" g_stop="4561" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="742" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4431" g_stop="4214" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="962" r_length="220" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1011" polyA_stop="1023"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E727199" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>960</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7420" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4653" e_stop="4561"/>
          <exon e_start="4431" e_stop="4214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAAGTTAGTTCCATATGCTACGTACTTGTTTTTTCCTTAAAAGTTATAACCTGTCTTGTGAATCTTGTCTCGATTATATATCCATTTATTTGAAACCTCTGACAAGGCTTGTTTGCCTTCCAAATGTTACAGGTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCTTGTTATATAATCCCCCCACCCCAACTGCCCACATCTTGTAAATCATAACTCAATT-AGTATTAT-GTTTAAATTATA</genome_strand>
        <mrna_strand>GAGGGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCACACAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG................................................................................................................AATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAA.................................................................................................................................GTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTTCTGTTATATAATCCCCCCACCCCCACTGCCCACATCTTGTAAATCATTACTCAATTAAGTATTATGGTTTAAATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373466" ref_strand="-" ref_description="SGN-E373466 [TUS-31-N22](-)">
      <seq>ctagttctctcctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagctgctagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccacacaaaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgagttaagcacatatgctatcagagatgcagaggagtacaagaacttttgtgatcgccctagggatcagcgtccacaacccgaagaagttattggggacattgctgaacatttgactaccattcatctaaagcgctgtgagcgtgggaaacggtgcttgtatgaaggttcaacacctgcagatggatttcctaattcatggcagaatggtgcgacatactgtacctcagaacttgctgtgttaaagaataatgagatacatgcctgggatagaggctttgatgatgatggcaatcaagtttggggtgtaaaaggaggtccttatgaattcaagcctgctccttcttcaagttttaacgatgtgctaaatcctttgagttttgcttcacaacccctgnggaaaagaatagaaggctcatttgtcctccaggaatgatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7512" stop="3989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7213" g_stop="7168" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.848"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="0.85"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="96" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="157" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="193" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="244" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="337" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="442" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4765" i_stop="4657" i_length="109">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4656" g_stop="4561" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="538" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4431" g_stop="4289" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="681" r_length="143" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E373466" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373466" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7213" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4656" e_stop="4561"/>
          <exon e_start="4431" e_stop="4289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAAGTTAGTTCCATATGCTACGTACTTGTTTTTTCCTTAAAAGTTATAACCTGTCTTGTGAATCTTGTCTCGATTATATATCCATTTATTTGAAACCTCTGACAAGGCTTGTTTGCCTTCCAAATGTTACAGGTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCT</genome_strand>
        <mrna_strand>CTAGTTCTCTCCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCACACAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG.............................................................................................................CAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAA.................................................................................................................................GTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGNGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373906" ref_strand="-" ref_description="SGN-E373906 [TUS-31-O22](-)">
      <seq>ctagttctctcctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagctgctagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccacacaaaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgagttaagcacatatgctatcagagatgcagaggagtacaagaacttttgtgatcgccctagggatcagcgtccacaacccgaagaagttattggggacattgctgaacatttgactaccattcatctaaagcgctgtgagcgtgggaaacggtgcttgtatgaaggttcaacacctgcagatggatttcctaattcatggcagaatggtgcgacatactgtacctcagaacttgctgtgttaaagaataatgagatacatgcctgggatagaggctttgatgatgatggcaatcaagtttggggtgtaaaaggaggtccttatgaattcaagcctgctccttcttcaagttttaacgatgtgctaaatcctttgagttttgcttcacaacccctggggaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7512" stop="4023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7213" g_stop="7168" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.848"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="0.85"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="96" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="157" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="193" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="244" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="337" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="442" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4765" i_stop="4657" i_length="109">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4656" g_stop="4561" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="538" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4431" g_stop="4323" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="647" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E373906" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373906" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7213" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4656" e_stop="4561"/>
          <exon e_start="4431" e_stop="4323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAAGTTAGTTCCATATGCTACGTACTTGTTTTTTCCTTAAAAGTTATAACCTGTCTTGTGAATCTTGTCTCGATTATATATCCATTTATTTGAAACCTCTGACAAGGCTTGTTTGCCTTCCAAATGTTACAGGTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAA</genome_strand>
        <mrna_strand>CTAGTTCTCTCCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCACACAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG.............................................................................................................CAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAA.................................................................................................................................GTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207725" ref_strand="+" ref_description="SGN-E207725 [cLEC-32-K13]">
      <seq>aagaacttttgtgatcgccctagggatcagcgtccacaacccgaagaagttattggggacattgctgaacatttgactaccattcatctaaagcgctgtgagcgtgggaaacggtgcttgtatgaaggttcaacacctgcagatggatttcctaattcatggcagaatggtgcgacatactgtacctcagaacttgctgtgttaaagaataatgagatacatgcctgggatagaggctttgatgatgatggcaatcaagtttggggtgtaaaaggaggtccttatgaattcaagcctgctccttcttcaagttttaacgatgtgctaaatcctttgagttttgcttcacaacccctggggaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5516" stop="4025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5216" g_stop="5160" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="162" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4765" i_stop="4657" i_length="109">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4656" g_stop="4561" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="258" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4431" g_stop="4325" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="365" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E207725" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5216" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4656" e_stop="4561"/>
          <exon e_start="4431" e_stop="4325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAAGTTAGTTCCATATGCTACGTACTTGTTTTTTCCTTAAAAGTTATAACCTGTCTTGTGAATCTTGTCTCGATTATATATCCATTTATTTGAAACCTCTGACAAGGCTTGTTTGCCTTCCAAATGTTACAGGTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAG</genome_strand>
        <mrna_strand>AAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG.............................................................................................................CAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAA.................................................................................................................................GTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704455" ref_strand="+" ref_description="SGN-E704455 [FA24BD07]">
      <seq>gacaagcacaagctaagatgatttatcggttaaatgatctgctgttgaagagtccactttaagtattaaagcgccggcatgtgtacgggctcggactcgggtttgggttcggattctaagtcggatcccgactcaaacgggtggagccgagctcgtggagcggttctcaagtcgctggtgctcgtcggaggagccttattgctccggcggctaactaagtcgactacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagctgctagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccacacaaaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgagttaagcacatatgctatcagagatgcagaggagtacaagaacttttgtgatcgccctagggatcagcgtccacaacccgaagaagttattggggacattgctgaacattgactaccattcatctaaagcgctgtgagcgtgggaaacggtgcttgtatgaaggttcaacacctgcagatggatttcctaattcatggcagaatggtgcgacatactgtacctcagaacttgctgtgttaaagaataatgagatacatgcctgggatagaggctttgatgatgatgggcatcaagtttggggtgtaaaaggaggtccttatgaattcaagcctgctccttcttcagttttaacgatgtgctnaatcctttgagttttgcttcacaacccctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7743" stop="4031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7443" g_stop="7168" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="326" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="387" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="423" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="474" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="567" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="671" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4765" i_stop="4657" i_length="109">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4656" g_stop="4561" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="767" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4431" g_stop="4331" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="867" r_length="100" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E704455" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7443" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4656" e_stop="4561"/>
          <exon e_start="4431" e_stop="4331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAAGTTAGTTCCATATGCTACGTACTTGTTTTTTCCTTAAAAGTTATAACCTGTCTTGTGAATCTTGTCTCGATTATATATCCATTTATTTGAAACCTCTGACAAGGCTTGTTTGCCTTCCAAATGTTACAGGTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGG</genome_strand>
        <mrna_strand>GACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCACACAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GACATTGCTGAACA-TTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG.............................................................................................................CAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGGCATCAA.................................................................................................................................GTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTC-AGTTTTAACGATGTGCTNAATCCTTTGAGTTTTGCTTCACAACCCCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700879" ref_strand="+" ref_description="SGN-E700879 [FA14BF11]">
      <seq>agggaaccctgtaaggcacaagctaagatgatttatcggttaaatgatccgctgttgaagagtccactttaagtattaaagcgccggcatgtgtacgggctcggactcgggtttgggttcggattctaagtcggatcccgactcaaacgggtggagccgagctcgtggagcggttctcaagtcgctggtgctcgtcggaggagccttattgctccggcggctaactaagtcgactacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagctgctagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccacacaaaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgagttaagcacatatgctatcagagatgcagaggagtacaagaacttttgtgatcgccctagggatcagcgtccacaacccgaagaagttattggggacattgctgaacatttgactaccattcatctaaagcgctgtgagcgtgggaaacggtgcttgtatgaaggttcaacacctgcagatggatttcctaattcatggcagaatggtgcgacatactgtacctcagaacttgctgtgttaaagaataatgagatacatgcctgggatagaggctttgatgatgatggcaatcaagtttggggtgtaaaaggaggtccttatgaattcaagcctgctccttctttcagttttaacgatgtgctaaatcctttgagttttgcttcacaacccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7740" stop="4034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7453" g_stop="7168" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="336" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="397" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="433" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="484" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="577" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="682" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4765" i_stop="4657" i_length="109">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4656" g_stop="4561" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="778" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4431" g_stop="4334" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="876" r_length="98" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E700879" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7453" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4656" e_stop="4561"/>
          <exon e_start="4431" e_stop="4334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAAGCTGACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAAGTTAGTTCCATATGCTACGTACTTGTTTTTTCCTTAAAAGTTATAACCTGTCTTGTGAATCTTGTCTCGATTATATATCCATTTATTTGAAACCTCTGACAAGGCTTGTTTGCCTTCCAAATGTTACAGGTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCT</genome_strand>
        <mrna_strand>AGGGAACCCTGTAAGGCACAAGCTAAGATGATTTATCGGTTAAATGATCCGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCACACAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG.............................................................................................................CAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAA.................................................................................................................................GTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTTCAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736914" ref_strand="+" ref_description="SGN-E736914 [LC07DB06]">
      <seq>agaaagctgacaagcacaagctaagatgatttatcggttaaatgatctgctgttgaagagtccactttaagtattaaagcgccggcatgtgtacgggctcggactcgggtttgggttcggattctaagtcggatcccgactcaaacgggtggagccgagctcgtggagcggttctcaagtcgctggtgctcgtcggaggagccttattgctccggcggctaactaagtcgactacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagctgctagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccacacaaaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgagttaagcacatatgctatcagagatgcagaggagtacaagaacttttgtgatcgccctagggatcagcgtccacaacccgaagaagttattggggacattgctgaacatttgactaccattcatctaaagcgctgtgagcgtgggaaacggtgcttgtatgaaggttcaacacctgcagatggatttcctaattcatggaatggtgcgacatactgtacctcagaacttgctgtgttaaagaataatgagatacatgcctgggatagaggctttgatgatgatggcaatcaagttttgggtgtaaaaagaggtccttatgaattcaagcctgctccttctttcaagtttaacgatgtgctaaatcctttgagttttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7751" stop="4044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7451" g_stop="7168" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="334" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="395" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="431" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="482" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="575" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="680" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4765" i_stop="4654" i_length="112">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4653" g_stop="4561" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="773" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4431" g_stop="4344" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="861" r_length="88" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E736914" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7451" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4653" e_stop="4561"/>
          <exon e_start="4431" e_stop="4344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGCTGACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAAGTTAGTTCCATATGCTACGTACTTGTTTTTTCCTTAAAAGTTATAACCTGTCTTGTGAATCTTGTCTCGATTATATATCCATTTATTTGAAACCTCTGACAAGGCTTGTTTGCCTTCCAAATGTTACAGGTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTT</genome_strand>
        <mrna_strand>AGAAAGCTGACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCACACAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG................................................................................................................AATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAA.................................................................................................................................GTTTTGGGTGTAAAAAGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTTCAAGTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730444" ref_strand="+" ref_description="SGN-E730444 [LA24AF03]">
      <seq>ccttatatggtctgctgttgaagagtccactttaagtattaaagcgccggcatgtgtacgggctcggactcgggtttgggttcggattctaagtcggatcccgactcaaacgggtggagccgagctcgtggagcggttctcaagtcgctggtgctcgtcggaggagccttattgctccggcggctaactaagtcgactacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagctgctagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccacacaaaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgagttaagcacatatgctatcagagatgcagaggagtacaagaacttttgtgatcgccctagggatcagcgtccacaacccgaagaagttattggggacattgctgaacatttgactaccattcatctaaagcgctgtgagcgtgggaaacggtgcttgtatgaaggttcaacacctgcagatggatttcctaattcatggcagaatggtgcgacatactgtacctcagaacttgctgtgttaaagaataatgagatacatgcctgggatagaggctttgatgatgatggcaatcaagttagttccatatgctacgtacttgttttttccttaaaagtttggggtgtaaaaggaggtccttatgaattcaagcctgctccttcttcaagttttaacgatgtgctaaatcctttgagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7714" stop="4048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7416" g_stop="7168" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="299" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="360" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="396" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="447" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="540" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="645" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4765" i_stop="4657" i_length="109">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4656" g_stop="4522" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="780" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4521" i_stop="4432" i_length="90">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4431" g_stop="4348" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="864" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E730444" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7416" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4656" e_stop="4522"/>
          <exon e_start="4431" e_stop="4348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAAGTTAGTTCCATATGCTACGTACTTGTTTTTTCCTTAAAAGTTATAACCTGTCTTGTGAATCTTGTCTCGATTATATATCCATTTATTTGAAACCTCTGACAAGGCTTGTTTGCCTTCCAAATGTTACAGGTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTT</genome_strand>
        <mrna_strand>CCTTATATGGTCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCACACAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG.............................................................................................................CAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAAGTTAGTTCCATATGCTACGTACTTGTTTTTTCCTTAAAA..........................................................................................GTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453863" ref_strand="+" ref_description="SGN-E453863 [cSTS-21-K10]">
      <seq>ccgagctcgtggagcggtcctcaagtcactggtgctcgtcggaggaagccttattgctccggcggctaactaagtcgaccacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagcggttagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccgcacaaacccttcagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgaggtaagcacatatgctatcagagatgcagaggagtacaagaacttctgtgatcgccctagggatcagcgtccacaacccgaagaagttattggggatattgctgaacatttgactaccattcatctaaagcgctgtgagcgtgggaaacgatgcttatatgaaggttcaacaccagcagatggatttcctaattcatggcagaatggtgcgacatactgtacctcagaacttgctgtgttgaagaataatgagatacatgcctgggatagaggttttgatgatgatggcaatcaagtttgggggtgtaaaaggaggtccttatgaattcaagcctgcntcttcttcaagttttaacgatgtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7597" stop="4064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7297" g_stop="7168" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="181" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="242" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="278" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="329" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="422" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="527" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4765" i_stop="4657" i_length="109">
            <donor d_prob="0.921" d_score="0.94"/>
            <acceptor a_prob="0.871" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4656" g_stop="4561" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="623" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4431" g_stop="4363" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="693" r_length="70" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E453863" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7297" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4656" e_stop="4561"/>
          <exon e_start="4431" e_stop="4363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGG-AGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAAGTTAGTTCCATATGCTACGTACTTGTTTTTTCCTTAAAAGTTATAACCTGTCTTGTGAATCTTGTCTCGATTATATATCCATTTATTTGAAACCTCTGACAAGGCTTGTTTGCCTTCCAAATGTTACAGGTTT-GGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTA</genome_strand>
        <mrna_strand>CCGAGCTCGTGGAGCGGTCCTCAAGTCACTGGTGCTCGTCGGAGGAAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACCACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCGGTTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCGCACAAACCCTTCAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTCTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GATATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGATGCTTATATGAAGGTTCAACACCAGCAGATGGATTTCCTAATTCATGG.............................................................................................................CAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTGAAGAATAATGAGATACATGCCTGGGATAGAGGTTTTGATGATGATGGCAATCAA.................................................................................................................................GTTTGGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCNTCTTCTTCAAGTTTTAACGATGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730884" ref_strand="+" ref_description="SGN-E730884 [LA25CA06]">
      <seq>gaggcactactaagatgatttatcggttaaatgatctgctgttgacgagtccactttaagtattaaagcgccggcatgtgtacgggctcggactcgggtttgggttcggattctaagtcggatcccgactcaaacgggtggagccgagctcgtggagcggttctcaagtcgctggtgctcgtcggaggagccttattgctccggcggctaactaagtcgactacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagctgctagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccacacaaaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgagttaagcacatatgctatcagagatgcagaggagtacaagaacttttgtgatcgccctagggatcagcgtccacaacccgaagaagttattggggacattgctgaacatttgactaccattcatctaaagcgctgtgagcgtgggaaacggtgcttgtatgaaggttcaacacctgcagatggatttcctaattcatggcagaatggtgcgacatactgtacctcagaacttgctgtgttanagaataatgagatacatgcctgggatagaggctttgatgatgatggcaatcaagtttggggtgtaaaaggaggtccttatgaattncagcctgctccttcctcaagttttaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7740" stop="4071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7441" g_stop="7168" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="323" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="384" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="420" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="471" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="564" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="669" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4765" i_stop="4657" i_length="109">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4656" g_stop="4561" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="765" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4431" g_stop="4371" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="826" r_length="61" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E730884" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7441" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4656" e_stop="4561"/>
          <exon e_start="4431" e_stop="4371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAAGTTAGTTCCATATGCTACGTACTTGTTTTTTCCTTAAAAGTTATAACCTGTCTTGTGAATCTTGTCTCGATTATATATCCATTTATTTGAAACCTCTGACAAGGCTTGTTTGCCTTCCAAATGTTACAGGTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACG</genome_strand>
        <mrna_strand>GAGGCACTA-CTAAGATGATTTATCGGTTAAATGATCTGCTGTTGACGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCACACAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG.............................................................................................................CAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTANAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAA.................................................................................................................................GTTTGGGGTGTAAAAGGAGGTCCTTATGAATTNCAGCCTGCTCCTTCCTCAAGTTTTAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393359" ref_strand="-" ref_description="SGN-E393359 [TUS-38-B19](-)">
      <seq>actagttctctcctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagctgctagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccacacaaaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgagttaagcacatatgctatcagagatgcagaggagtacaagaacttttgtgatcgccctagggatcagcgtccacaacccgaagaagttattggggacattgctgaacatttgactaccattcatctaaagcgctgtgagcgtgggaaacggtgcttgtatgaaggttcaacacctgcagatggatttcctaattcatggcagaatggtgcgacatactgtacctcagaacttgctgtgttaaagaataatgagatacatgcctgggatagaggctttgatgatgatggcaatcaagtttggggtgtaaaacgaggtccttaatgagttcccgcctgctccttcttcaagttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7512" stop="4075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7214" g_stop="7168" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.830"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="0.83"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="97" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="158" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="194" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="245" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="338" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="443" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4765" i_stop="4657" i_length="109">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4656" g_stop="4561" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="539" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4431" g_stop="4374" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="598" r_length="59" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E393359" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7214" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4656" e_stop="4561"/>
          <exon e_start="4431" e_stop="4374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAAGTTAGTTCCATATGCTACGTACTTGTTTTTTCCTTAAAAGTTATAACCTGTCTTGTGAATCTTGTCTCGATTATATATCCATTTATTTGAAACCTCTGACAAGGCTTGTTTGCCTTCCAAATGTTACAGGTTTGGGGTGTAAAAGGAGGTCCTT-ATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTA</genome_strand>
        <mrna_strand>ACTAGTTCTCTCCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCACACAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG.............................................................................................................CAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAA.................................................................................................................................GTTTGGGGTGTAAAACGAGGTCCTTAATGAGTTCCCGCCTGCTCCTTCTTCAAGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727666" ref_strand="+" ref_description="SGN-E727666 [LA15BE06]">
      <seq>gcacaagctaagatgatttatcggttaaatgatctgctgttgaagagtccactttaagtattaaagcgccggcatgtgtacgggctcggactcgggtttgggttcggattctaagtcggatcccgactcaaacgggtggagccgagctcgtggagcggttctcaagtcgctggtgctcgtcggaggagccttattgctccggcggctaactaagtcgactacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagctgctagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccacacaaaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgagttaagcacatatgctatcagagatgcagaggagtacaagaacttttgtgatcgccctagggatcagcgtccacaacccgaagaagttattggggacattgctgaacatttgactaccattcatctaaagcgctgtgagcgtgggaaacggtgcttgtatgaaggttcaacacctgcagatggatttcctaattcatggcagaatggtgcgacatactgtacctcagaacttgctgtgttanagaataatgagatacatgcctgggatagaggctttgatgatgatggcaatcaagtttggggtgtaaaaggaggtccttatgaattcaagcctgctccttcttcaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7738" stop="4076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7438" g_stop="7168" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="321" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="382" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="418" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="469" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="562" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="667" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4765" i_stop="4657" i_length="109">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4656" g_stop="4561" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="763" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4431" g_stop="4376" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="819" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E727666" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7438" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4656" e_stop="4561"/>
          <exon e_start="4431" e_stop="4376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAAGTTAGTTCCATATGCTACGTACTTGTTTTTTCCTTAAAAGTTATAACCTGTCTTGTGAATCTTGTCTCGATTATATATCCATTTATTTGAAACCTCTGACAAGGCTTGTTTGCCTTCCAAATGTTACAGGTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTT</genome_strand>
        <mrna_strand>GCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCACACAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG.............................................................................................................CAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTANAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAA.................................................................................................................................GTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728279" ref_strand="+" ref_description="SGN-E728279 [LA17BB10]">
      <seq>acgatgatttatcggttaaatgatctgctgttgaagagtccactttaagtattaaagcgccggcatgtgtacgggctcggactcgggtttgggttcggattctaagtcggatcccgactcaaacgggtggagccgagctcgtggagcggttctcaagtcgctggtgctcgtcggaggagccttattgctccggcggctaactaagtcgactacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagctgctagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccacacaaaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgagttaagcacatatgctatcagagatgcagaggagtacaagaacttttgtgatcgccctagggatcagcgtccacaacccgaagaagttattggggacattgctgaacatttgactaccattcatctaaagcgctgtgagcgtgggaaacggtgcttgtatgaaggttcaacacctgcagatggatttcctaattcatggaatggtgcgacatactgtacctcagaacttgctgtgttaaagaataatgagatacatgcctgggatagaggctttgatgatgatggcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7729" stop="4264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7429" g_stop="7168" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="312" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="373" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="409" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="460" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="553" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="658" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4765" i_stop="4654" i_length="112">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4653" g_stop="4564" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="748" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E728279" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7429" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4653" e_stop="4564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAAT</genome_strand>
        <mrna_strand>ACGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCACACAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG................................................................................................................AATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619164" ref_strand="+" ref_description="SGN-E619164 [69850]">
      <seq>tggaagcagaagctaagatgatttatcggttaaataatctgctgttgaagagtccactttaagtgttaagcgccggcatgtgtacgggctcggactcgggtttgggttcgaattctaagtcggatcctgactcaaacgggtggagccgagctcgtggagcggtcctcaagtcactggtgctcgtcggaggagccttattgctccggcggctaactaagtcgaccacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagcggttagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccgcacaaacccttcagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgaggtaagcacatatgctatcagagatgcagaggagtacaagaacttctgtgatcgccctagggatcagcgtccacaacccgaagaagttattggggatattgctgaacatttgactaccattcatctaaagcgctgtgagcgtgggaaacgatgcttatatgaaggttcaacaccagcagatggatttcctaattcatggcagaatggtgcgacatactgtacctcagaacttgctgtgttgaagaataatgagatacatgcctgggatagaggtttgatgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7740" stop="4269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7444" g_stop="7168" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="325" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="386" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="422" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="473" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="566" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="671" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4765" i_stop="4657" i_length="109">
            <donor d_prob="0.921" d_score="0.94"/>
            <acceptor a_prob="0.871" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4656" g_stop="4569" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="758" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E619164" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7444" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4656" e_stop="4569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATG</genome_strand>
        <mrna_strand>TG-GAAGCAGAAGCTAAGATGATTTATCGGTTAAATAATCTGCTGTTGAAGAGTCCACTTTAAGTGTT-AAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGAATTCTAAGTCGGATCCTGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTCCTCAAGTCACTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACCACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCGGTTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCGCACAAACCCTTCAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTCTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GATATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGATGCTTATATGAAGGTTCAACACCAGCAGATGGATTTCCTAATTCATGG.............................................................................................................CAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTGAAGAATAATGAGATACATGCCTGGGATAGAGG-TTTGATGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728434" ref_strand="+" ref_description="SGN-E728434 [LA17DC02]">
      <seq>gcactagctaagatgatttatcggttaaatgatctgctgttgaagagtccactttaagtattaaagcgccggcatgtgtacgggctcggactcgggtttgggttcggattctaagtcggatcccgactcaaacgggtggagccgagctcgtggagcggttctcaagtcgctggtgctcgtcggaggagccttattgctccggcggctaactaagtcgactacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagctgctagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccacacaaaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgagttaagcacatatgctatcagagatgcagaggagtacaagaacttttgtgatcgccctagggatcagcgtccacaacccgaagaagttattggggacattgctgaacatttgactaccattcatctaaagcgctgtgagcgtgggaaacggtgcttgtatgaaggttcaacacctgcagatggatttcctaattcatggaatggtgcgacatactgtacctcagaacttgctgtngtaaagaataatgagatacatgcctgggatagaggctttgatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7738" stop="4271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7438" g_stop="7168" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="321" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="382" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="418" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="469" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="562" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="667" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4765" i_stop="4654" i_length="112">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4653" g_stop="4571" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="750" r_length="83" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E728434" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7438" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4653" e_stop="4571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGA</genome_strand>
        <mrna_strand>GCACTAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCACACAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG................................................................................................................AATGGTGCGACATACTGTACCTCAGAACTTGCTGTNGTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328033" ref_strand="+" ref_description="SGN-E328033 [cTOC-22-C20]">
      <seq>acaagcacaagctaagatgatttatcggttaaatgatctgctgttgaagagtccactttaagtattaaagcgccggcatgtgtacgggctcggactcgggtttgggttcggattctaagtcggatcccgactcaaacgggtggagccgagctcgtggagcggttctcaagtcgctggtgctcgtcggaggagccttattgctccggcggctaactaagtcgactacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagctgctagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccacacaaaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgagttaagcacatatgctatcagagatgcagaggagtacaagaacttttgtgatcgccctagggatcagcgtccacaacccgaagaagttattggggacattgctgaacatttgactaccattcatctaaagcgctgtgagcgtgggaaacggtgcttgtatgaanggttcacacctgcagatggatttcctaattcatggcagaatggtgcgacatactgtacctcagaacttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7742" stop="4321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7442" g_stop="7168" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="325" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="386" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="422" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="473" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="566" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="671" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4765" i_stop="4657" i_length="109">
            <donor d_prob="0.921" d_score="0.92"/>
            <acceptor a_prob="0.871" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4656" g_stop="4621" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="707" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E328033" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7442" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4656" e_stop="4621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCT</genome_strand>
        <mrna_strand>ACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCACACAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAANGGTTCACACCTGCAGATGGATTTCCTAATTCATGG.............................................................................................................CAGAATGGTGCGACATACTGTACCTCAGAACTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327773" ref_strand="+" ref_description="SGN-E327773 [cTOC-20-D23]">
      <seq>acaagcacaagctaagatgatttatcggttaaatgatctgctgttgaagagtccactttaagtattaaagcgccggcatgtgtacgggctcggactcgggtttgggttcggattctaagtcggatcccgactcaaacgggtggagccgagctcgtggagcggttctcaagtcgctggtgctcgtcggaggagccttattgctccggcggctaactaagtcgactacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagctgctagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccacacaaaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgagttaagcacatatgctatcagagatgcagaggagtacaagaacttttgtgatcgccctagggatcagcgtccacaacccgaagaagttattggggacattgctgaacatttgactaccattcatctaaagcgctgtgagcgtgggaaacggtgcttgtatgaagggttcacacctgcagatggatttcctaattcatggcagaatggtgcgacatactgtacctcagaacttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7742" stop="4321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7442" g_stop="7168" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="325" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="386" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="422" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="473" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="566" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4766" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="671" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4765" i_stop="4657" i_length="109">
            <donor d_prob="0.921" d_score="0.94"/>
            <acceptor a_prob="0.871" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4656" g_stop="4621" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="707" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E327773" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7442" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4766"/>
          <exon e_start="4656" e_stop="4621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATTTCCCTATGTTTTTCATTAATCTTAGTGGTGAGATCCATATCATGATAGCCTTTGATGTTTTCTCCTTTCCTATTAAGTTTTGGAAGTTTATTTTGCCTATGTAGCAGAATGGTGCGACATACTGTACCTCAGAACTTGCT</genome_strand>
        <mrna_strand>ACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCACACAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGGTTCACACCTGCAGATGGATTTCCTAATTCATGG.............................................................................................................CAGAATGGTGCGACATACTGTACCTCAGAACTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600387" ref_strand="+" ref_description="SGN-E600387 [53397]">
      <seq>gttaaataatctgctgttgaagagtccactgtaagtgttaagcgccggcatgtgtacggggtcggactcgggtttgggttcggattctaagtcggatcccgactcaaacgggtggagccgagctcgtggagcggtcctcaagtcgctggtgctcgtcggaggcgccttattgctccggcggctaactaagtcgaccacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagcggttagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccgcataaaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgaggtaagcacatatgctatcagagatgcagaggagtacaagaacttctgtgatcgccctagagatcagcgtccacaacccgaagaagttattggggatattgctgaacatttgactaccattcatctaaagcgctgtgagcgtgggaaacgatgcttatatgaagggttcaacaccagcagatggatttcctaattcatgggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7715" stop="4462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7415" g_stop="7168" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="297" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="358" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="394" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="445" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="538" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4761" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="649" r_length="111" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E600387" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E600387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7415" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAA-GGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATT</genome_strand>
        <mrna_strand>GTTAAATAATCTGCTGTTGAAGAGTCCACTGTAAGTGTT-AAGCGCCGGCATGTGTACGGGGTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTCCTCAAGTCGCTGGTGCTCGTCGGAGGCGCCTTATTGCTCCGGCGGCTAACTAAGTCGACCACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCGGTTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCGCATAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTCTGTGATCGCCCTAGAGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GATATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGATGCTTATATGAAGGGTTCAACACCAGCAGATGGATTTCCTAATTCATGGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480061" ref_strand="+" ref_description="SGN-E480061 [cSTD-12-O16]">
      <seq>gggtcggactcgggtttgggttcggattctaagtcggatcccgactcaaacgggtggagccgagctcgtggagcggtcctcaagtcgctggtgctcgtcggaggcgccttattgctccggcggctaactaagtcgaccacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagcggttagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccgcataaaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgaggtaagcacatatgctatcagagatgcagaggagtacaagaaccttctgtgatcgccctagagatcagcgtccacaacccgaagaagttattggggatattgctgaacatttgactaccattcatctaaagcgctgtgagcgtgggaaacgatgcttatatngaaggttcaacaccagcagatggatttcctaattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7657" stop="4468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7356" g_stop="7168" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="239" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="300" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="336" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="387" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="481" r_length="94" r_score="0.946"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4768" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="585" r_length="104" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E480061" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7356" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAA-CTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTAT-GAAGGTTCAACACCTGCAGATGGATTTCCTAATTCAT</genome_strand>
        <mrna_strand>GGGTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTCCTCAAGTCGCTGGTGCTCGTCGGAGGCGCCTTATTGCTCCGGCGGCTAACTAAGTCGACCACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCGGTTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCGCATAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACCTTCTGTGATCGCCCTAGAGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GATATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGATGCTTATATNGAAGGTTCAACACCAGCAGATGGATTTCCTAATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561901" ref_strand="+" ref_description="SGN-E561901 [20180]">
      <seq>gtttatacaaattattactctattttcagtagttcacattttgcagaaagctgggaagcagaagctaagatgatttatcggttaaataatctgctgttgaagagtccactttaagtgttaagcgccggcatgtgtacgggctcggactcgggtttgggttcgaattctaagtcggatcctgactcaaacgggtggagccgagctcgtggagcggtcctcaagtcactggtgctcgtcggaggagccttattgctccggcggctaactaagtcgaccacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagcggttagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccgcacaaacccttcagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgaggtaagcacatatgctatcagagatgcagaggagtacaagaacttctgtgatcgccctagggatcagcgtccacaacccgaagaagttattgggggatattgctgaacattttgacttaccattcatctaaagcgctgtgagcgtgggaaaccgatgctttatatgaagcgttcaaaccaccaggcagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7782" stop="4501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7492" g_stop="7168" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="377" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="438" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="474" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="525" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="618" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4801" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="693" r_length="75" r_score="0.814"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E561901" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7492" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATACAAATTACT-C-C-ATTTTCAGTAGTACAGATTTTGCAGAAAGCTGACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAG-GACATTGCTGAACATT-TGAC-TACCATTCATCTAAAGCGCTGTGAGCGTGGGAAA-CGGTGC-TTGTATGAAG</genome_strand>
        <mrna_strand>GTTTATACAAATTATTACTCTATTTTCAGTAGTTCACATTTTGCAGAAAGCTGGGAAGCAGAAGCTAAGATGATTTATCGGTTAAATAATCTGCTGTTGAAGAGTCCACTTTAAGTGTT-AAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGAATTCTAAGTCGGATCCTGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTCCTCAAGTCACTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACCACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCGGTTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCGCACAAACCCTTCAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTCTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GGATATTGCTGAACATTTTGACTTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACCGATGCTTTATATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410719" ref_strand="+" ref_description="SGN-E410719 [PPI-17-J16]">
      <seq>atcgaacggcgtgaggcaacgtttatacaaattactccattttcagtagttcaaattttgcagaaagctgagaagcagaagctaagatgatttatcggttaaataatctgctgttgaagagtccactgtaagtgttaagcgccggcatgtgtacggggtcggactcgggtttgggttcggattctaagtcggatcccgactcaaacgggtggagccgagctcgtggagcggtcctcaagtcgctggtgctcgtcggaggcgccttattgctccggcggctaactaagtcgaccacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagcggttagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccgcataaaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgaggtaagcacatatgctatcagagatgcagaggagtacaagaacttctgtgatcgccctagagatcagcgtccacaacccgaagaaagtattggggatattgctgaacatttgactaccattcatctaaagcgctgtgagcgtggggaacgatgcttatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7812" stop="4504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7512" g_stop="7168" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="394" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="455" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="491" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="542" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="635" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4804" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="702" r_length="67" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E410719" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7512" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGGACGGCGTGAGGCAACATTTATACAAATTACTCCATTTTCAGTAGTACAGATTTTGCAGAAAGCTGACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATG</genome_strand>
        <mrna_strand>ATCGAACGGCGTGAGGCAACGTTTATACAAATTACTCCATTTTCAGTAGTTCAAATTTTGCAGAAAGCTGAGAAGCAGAAGCTAAGATGATTTATCGGTTAAATAATCTGCTGTTGAAGAGTCCACTGTAAGTGTT-AAGCGCCGGCATGTGTACGGGGTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTCCTCAAGTCGCTGGTGCTCGTCGGAGGCGCCTTATTGCTCCGGCGGCTAACTAAGTCGACCACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCGGTTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCGCATAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTCTGTGATCGCCCTAGAGATCAGCGTCCACAACCCGAAGAAAGTATTGGG.................................................................................................................................................................................................................................................................................................GATATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGGAACGATGCTTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327886" ref_strand="+" ref_description="SGN-E327886 [cTOC-22-O3]">
      <seq>acaagcacaagctaagatgatttatcggttaaatgatctgctgttgaagagtccactttaagtattaaagcgccggcatgtgtacgggctcggactcgggtttgggttcggattctaagtcggatcccgactcaaacgggtggagccgagctcgtggagcggttctcaagtcgctggtgctcgtcggaggagccttattgctccggcggctaactaagtcgactacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagctgctagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccacacaaaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgagttaagcacatatgctatcagagatgcagaggagtacaagaacttttgtgatcgccctagggatcagcgtccacaacccgaagaaagtattggggacattgctgaacatttgactaccattcatctaaagcgctgtgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7742" stop="4525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7442" g_stop="7168" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="325" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="386" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="422" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="473" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="566" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="612" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E327886" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7442" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGC</genome_strand>
        <mrna_strand>ACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCACACAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAAGTATTGGG.................................................................................................................................................................................................................................................................................................GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408580" ref_strand="+" ref_description="SGN-E408580 [PPI-11-F5]">
      <seq>gcagaagctaagatgatttactcggttaaataatctgctgttgaagagtccactttaagtgttaagcgccggcatgtgtacgggctcggactcgggtttgggttcgaattctaagtcggatcctgactcaaacgggtggagccgagctcgtggagcggtcctcaagtcactggtgctcgtcggaggagccttattgctccggcggctaactaagtcgaccacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagcggttagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccgcacaaacccttcagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgaggtaagcacatatgctatcagagatgcagaggagtacaagaacttctgtgatcgccctaaggatcagcgtccacaacccgaagaagttattggggatattgctgaacatttgactaccattcatctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7738" stop="4537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7438" g_stop="7168" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="321" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="382" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="418" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="469" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="562" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4837" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="596" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E408580" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7438" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAGCTAAGATGATTTA-TCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCTAA</genome_strand>
        <mrna_strand>GCAGAAGCTAAGATGATTTACTCGGTTAAATAATCTGCTGTTGAAGAGTCCACTTTAAGTGTT-AAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGAATTCTAAGTCGGATCCTGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTCCTCAAGTCACTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACCACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCGGTTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCGCACAAACCCTTCAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTCTGTGATCGCCCTAAGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GATATTGCTGAACATTTGACTACCATTCATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482640" ref_strand="+" ref_description="SGN-E482640 [cSTE-1-I21]">
      <seq>tttcagtagttcaccttttgcagacaagctgggaagcagaagcttaagacgctttctcggttaaataatctgctgttgaagagtccactttaagtgttaagcgcccggcatgtgtacgggctcggactcgggtttgggttcgaattctaagtcggatcctgactcaaaccgggtggagccgagctcgtggagcggtcctcaagtcactggtgctcgtcggaggagccttattgctccggcggctaactaaatcgaccacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagcggttagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccgcacaaacccttcagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgaggtaagcacatatgctatcagagatgcagaggagtacaagaactttctgtgatcgcccttaggatncagcgtccacaacccgaagaagttattggggatattgctgaacatttgactaccattcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7772" stop="4539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7472" g_stop="7168" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="358" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="419" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="455" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="506" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5160" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="601" r_length="95" r_score="0.925"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4870" g_stop="4839" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="633" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E482640" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7472" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5160"/>
          <exon e_start="4870" e_stop="4839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGTAGTACAGATTTTGCAGA-AAGCTGACAAGCACAAGCT-AAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGC-CGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAA-CGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTT-TGTGATCGCCCTAGGGAT-CAGCGTCCACAACCCGAAGAAGTTATTGGGGTAAATATTCAAATACATTAAGATTGAATCTATTGTTTCTTTATATTTTACATTTGAGTATAGACTCAGTCTGTACCTTTGTAAGATGTGTTCTCTCTTATGCCATATCTCTGTTGCTTAAATAAATCAAGTCTACCATGACAAACTGTTTAATAAATTCTTAGTTTGGTAAATACTTCATAGAAGTTTGATTGTTATGGAAATAAAACTGTTATAGAACATACAGTAACCTGGAGGAAACATTTAGGAATTTGCTGGAAAGTCAGTTTAGTTCTATCGTTATGTGCAGGACATTGCTGAACATTTGACTACCATTCATCT</genome_strand>
        <mrna_strand>TTTCAGTAGTTCACCTTTTGCAGACAAGCTGGGAAGCAGAAGCTTAAGACGCTTTCTCGGTTAAATAATCTGCTGTTGAAGAGTCCACTTTAAGTGTTAA-GCGCCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGAATTCTAAGTCGGATCCTGACTCAAACCGGGTGGAGCCGAGCTCGTGGAGCGGTCCTCAAGTCACTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAATCGACCACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCGGTTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCGCACAAACCCTTCAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTCTGTGATCGCCCTTAGGATNCAGCGTCCACAACCCGAAGAAGTTATTGGG.................................................................................................................................................................................................................................................................................................GATATTGCTGAACATTTGACTACCATTCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438950" ref_strand="+" ref_description="SGN-E438950 [cSTA-10-G16]">
      <seq>gcttaagatgatttatcggttaaataatctgctgttgaagagtccactttaagtgttaagcgccggcatgtgtacgggctcggactcgggtttgggttcgaattctaagtcggatcctgactcaaacgggtggagccgagctcgtggagcggtcctcaagtcactggtgctcgtcggaggagccttattgctccggcggctaactaaatcgaccacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagcggttagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccgcacaaacccttcagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgaggtaagcacatatgctatcagagatgcagaggagtacaagaacttctgtgatcgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7732" stop="4898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7432" g_stop="7168" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="315" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="376" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="412" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="463" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5198" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="518" r_length="55" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E438950" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7432" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GC-TAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCC</genome_strand>
        <mrna_strand>GCTTAAGATGATTTATCGGTTAAATAATCTGCTGTTGAAGAGTCCACTTTAAGTGTT-AAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGAATTCTAAGTCGGATCCTGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTCCTCAAGTCACTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAATCGACCACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCGGTTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCGCACAAACCCTTCAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTCTGTGATCGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729045" ref_strand="+" ref_description="SGN-E729045 [LA19DB11]">
      <seq>caagcacaagctaagatgatttatcggttaaatgatctgctgttgaagagtccactttaagtattaaagcgccggcatgtgtacgggctcggactcgggtttgggttcggattctaagtcggatcccgactcaaacgggtggagccgagctcgtggagcggttctcaagtcgctggtgctcgtcggaggagccttattgctccggcggctaactaagtcgactacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagctgctagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccacacaaaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgagttaagcacatatgctatcagagatgcagaggagttcaagaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7741" stop="4908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7441" g_stop="7168" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="324" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="385" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="421" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="472" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5208" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="517" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E729045" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7441" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTT</genome_strand>
        <mrna_strand>CAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCACACAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCACATATGCTATCAGAGATGCAGAGGAGTTCAAGAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273720" ref_strand="+" ref_description="SGN-E273720 [cLEN-7-K3]">
      <seq>caagcacaagctaagatgatttatcggttaaatgatctgctgttgaagagtccactttaagtattaaagcgccggcatgtgtacgggctcggactcgggtttgggttcggattctaagtcggatcccgactcaaacgggtggagccgagctcgtggagcggttctcaagtcgctggtgctcgtcggaggagccttattgctccggcggctaactaagtcgactgcacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagctgctagggatcctgataattattgtaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccacacagaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgagttaagcacatatgctatcagagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7741" stop="4929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7441" g_stop="7168" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="324" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="385" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="421" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="472" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5252" g_stop="5229" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="496" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E273720" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7441" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
          <exon e_start="5252" e_stop="5229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAGGTTGGTCCAAATTCATATTTCTGTAACTAAACTTTGCTCTGCATTCTACTCCCCTTGCTAAGCCTCTTCACACTTATGTTTGGCATGAGTAGCATAAATTTAAAACACTTACTTTAGTGTAGAACCATCATCCTTTATTGTTGCATCATGTAGTATAATGTGATTGGGTTCAATTCTACTTCACATACAGGCTTGTTCGCTTGAATAATTACTCATTTTAATTTATTGTTGGTGGGTGTGGGTGAGGAGGATTATCAGGAGCTGAATAGAAGCATGAAGGTATGATGATGGTCTTCTGGTTGATAGGAAAATATTCTTTCTGCACTGACTGTAATGGGAATACTACACCTTCCCTACATGGTTGCCTGTTCATGCAGCTGAATTCTAGAATTCCTGCAACTCTCCTGCAGTTTCCCTTTTTTTGGGTGTGTGTGTGTGGGGGGGGGGGGGGTAATCCAGTGATGGAAAACAAGCACTGGTAATAATATTGCAGCCTTTAATTCCATTATCAGTTGCTAATAATATTTCTTTATCTTCCTGTACAACATCTAGTTAAGCACATATGCTATCAGAGAT</genome_strand>
        <mrna_strand>CAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTGCACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTGTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCACACAGACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCACATATGCTATCAGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247186" ref_strand="+" ref_description="SGN-E247186 [cLEF-46-N16]">
      <seq>gaggcaacatttatacaaattactccattttcagtagtacagattttgcagaaagctgacaagcacaagctaagatgatttatcggttaaatgatctgctgttgaagagtccactttaagtattaaagcgccggcatgtgtacgggctcggactcgggtttgggttcggattctaagtcggatcccgactcaaacgggtggagccgagctcgtggagcggttctcaagtcgctggtgctcgtcggaggagccttattgctccggcggctaactaagtcgactacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagctgctagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccacacaaaccctttagacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgagttaagcacatatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7800" stop="5502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7500" g_stop="7168" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="383" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="444" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="480" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="531" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E247186" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7500" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCAACATTTATACAAATTACTCCATTTTCAGTAGTACAGATTTTGCAGAAAGCTGACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG</genome_strand>
        <mrna_strand>GAGGCAACATTTATACAAATTACTCCATTTTCAGTAGTACAGATTTTGCAGAAAGCTGACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCACACAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725621" ref_strand="+" ref_description="SGN-E725621 [LA04BC08]">
      <seq>tggagccgagctcgtggagcggttctcaagtcgctggtgctcgtcggaggagccttattgctccggcggctaactaagtcgactacactttgggaccatgctcgaattgtcgcagagtcactttaacggtgaaaagttttcaaaggagcaagctgctagggatcctgataattattttaatttcagatggctttcttgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccacacaaaccttttgacagagatttttcatggtcaagccttgtgcaaaggagttgaaatgtgatgttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7602" stop="5505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7302" g_stop="7168" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="186" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="247" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="282" r_length="35" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5805" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="333" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E725621" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7302" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCAC-TTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG</genome_strand>
        <mrna_strand>TGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACTTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCTTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCACACAAA-CCTTTTGACAG....................................................................................................................................................................................................................AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729148" ref_strand="+" ref_description="SGN-E729148 [LA20AE08]">
      <seq>cacaagctaagatgatttatcggttaaatgatctgctgttgaagagtccactttaagtattaaagcgccggcatgtgtacgggctcggactcgggtttgggttcggattctaagtcggatcccgactcaaacgggtggagccgagctcgtggagcggttctcaagtcgctggtgctcgtcggaggagccttattgctccggcggctaactaagtcgactacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttgtcaaaggagcaagctgctagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtctatggctctcaggttttatattttgagcaggcattttggcgaacaccacacaaaccctttagacagagatttaccacgggcaagccttgtgcaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7737" stop="5524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7437" g_stop="7168" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="320" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="381" r_length="61" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="417" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5824" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="449" r_length="32" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E729148" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7437" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGA</genome_strand>
        <mrna_strand>CACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTGTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTCTATGGCTCTCAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCACACAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTACCACGGGCAAGCCTTGTGCAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293395" ref_strand="+" ref_description="SGN-E293395 [cLET-18-N3]">
      <seq>taagatgatttatcggttaaatgatctgctgttgaagagtccactttaagtattaaagcgccggcatgtgtacgggctcggactcgggtttgggttcggattctaagtcggatcccgactcaaacgggtggagccgagctcgtggagcggttctcaagtcgctggtgctcgtcggaggagccttattgctccggcggctaactaagtcgactacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagttttcaaaggagcaagctgctagggatcctgataattattttaatttcagatggctttcctgtcctgctgcagacatggtagatggctctaaggttttatattttgagcaggcattttggcgaacaccacacaaaccctttagacagagatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7730" stop="5768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7430" g_stop="7168" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="313" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6196" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="374" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6103" g_stop="6068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="410" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5855" g_stop="5847" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="419" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E293395" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7430" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6196"/>
          <exon e_start="6103" e_stop="6068"/>
          <exon e_start="5855" e_stop="5847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAGGTAAATATCTCTATATCACGATTTGTTTTTTTCATGCTCCAGGTCTGAACCAAGAATGATCAGTTTACGATGGATCTAATTTTGTTTTGTAGGCATTTTGGCGAACACCACACAAACCCTTTAGACAGGTGAGTGAAATCCAATAATTTTTTGTTTGTTCTTGACATTTCTATCTGTGGCATTATAGACCTGATAGCTCTAGTCCAGTTTTTCTGTCTTGTTTGCTTTGATTGCTGAAACATACATAATCCCATAAGATGGCTGAAGTTTTTAATTTGATTTGTTGCTCTTATAGCTGAGAGAACTTCAGTACTTAATTTCTAACAGAACTCTTTTGCAGAGATTTTTC</genome_strand>
        <mrna_strand>TAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG............................................................................................GCATTTTGGCGAACACCACACAAACCCTTTAGACAG....................................................................................................................................................................................................................AGATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482334" ref_strand="+" ref_description="SGN-E482334 [cSTD-21-J18]">
      <seq>tcggacggcgtgaggcaacgtttgtacaaattattactccattttcagtagttcacattttgcagaaagctgggaagcagaagcttaagatgatttatcggttaaataatctgctgttgaagagtccactttaagtgttaagcgccggcatgtgtacgggctcggactcgggtttgggttcgaattctaagtcggatcctgactcaaacgggtggagccgagctcgtggagcggtcctcaagtcactggtgctcgtcggaggagccttattgctccggcggctaactaaatcgaccacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaaagtttcaaaggagcaagcggttagggatcctgataatttatttaatttcagatgggtttcctgtcctgctgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7811" stop="5934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7511" g_stop="7168" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7019" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="397" r_length="50" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6256" g_stop="6234" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="420" r_length="23" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E482334" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7511" e_stop="7168"/>
          <exon e_start="7068" e_stop="7019"/>
          <exon e_start="6256" e_stop="6234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGACGGCGTGAGGCAACATTTATACAAA---TTACTCCATTTTCAGTAGTACAGATTTTGCAGAAAGCTGACAAGCACAAGC-TAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAGGTATTACATTCTTCGTTTGAAGTTATTACTGTTTCCTCTTTTACTTTTGGATGTGTTAGAAATGGTTGCTGCCAAATTTGCTTGTGTGAGTTTTGCATAGCCGATTTTTCCAGCTGTATAATAGGTAAGTAGTGTTGAATCTTATTTACTTCAATTTCATGATTGGAGATTGGCTCGAATGGAGCTGATTGAGTAACTAACTTTCAACTGCTCTATAATGAGGCTTAGTGGATTTTATTATTGGAGGTGTACAGTAGAAGTGGATTTTATTAAATGTTGATATTTTGGCACTTTTGTATGTTGTTCTTCGATTGGCCTGCAAAGTTACAAACCTTTTTTTTTAGAGATGTAGTGTTTAGGCTAGCTTGTGTGCAGCTCAACTAATTCCATGGGGTACCTCCCACACCAGCACATGTAACGAGTGACTCGATCTATCAAAGCTTCAATAGATTGGAAGAGATTACCTAGTGGTTTTGCTTCTGTTAGGATTTGAACTTGAGACGTCATGATTGTCAACCCACTTCATTGGTCACTTCTAGGTCACACCCTTGGTTGTGGAAGTCACAAACTTTAGGATGCATACCTTTCATAATTTGGATATCAATCTTCGAATGATCCATTCAGGCATGTGAGTGTGCTTCTCTCCAGGAGCTTTGCTTCTAGGCTCTAGCATATGGTCATCTCTTGATGTAGAAAAGACATGGTGAAAGTTTTTTTATTTGAAAATTTTCTTTTATTCACCTTTCATATTTTCATGTCTAGATGGCTTTCCTGTCCTGCTGCAG</genome_strand>
        <mrna_strand>TCGGACGGCGTGAGGCAACGTTTGTACAAATTATTACTCCATTTTCAGTAGTTCACATTTTGCAGAAAGCTGGGAAGCAGAAGCTTAAGATGATTTATCGGTTAAATAATCTGCTGTTGAAGAGTCCACTTTAAGTGTT-AAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGAATTCTAAGTCGGATCCTGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTCCTCAAGTCACTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAATCGACCACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAA...................................................................................................GTTTCAAAGGAGCAAGCGGTTAGGGATCCTGATAATTTATTTAATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTTTCCTGTCCTGCTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584760" ref_strand="+" ref_description="SGN-E584760 [10681]">
      <seq>ggatccccgggctgcaggcggttaataatctgctgttgaagagtccactttaagtgttaagcgccggcatgtgtacgggctcggactcgggtttgggttcgaattctaagtcggatcctgactcaaacgggtggagccgagctcgtggagcggtcctcaagtcactggtgctcgtcggaggagccttattgctccggcggctaactaaatcgaccacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagtttcaaaggagcaagcggttagggatcctgataattattttaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7717" stop="6721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7417" g_stop="7168" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="266" r_length="248" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7021" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="313" r_length="47" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E584760" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7417" e_stop="7168"/>
          <exon e_start="7068" e_stop="7021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTC</genome_strand>
        <mrna_strand>CGGTT-AATAATCTGCTGTTGAAGAGTCCACTTTAAGTGTT-AAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGAATTCTAAGTCGGATCCTGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTCCTCAAGTCACTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAATCGACCACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................-TTTCAAAGGAGCAAGCGGTTAGGGATCCTGATAATTATTTTAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200645" ref_strand="+" ref_description="SGN-E200645 [cLEC-9-I22]">
      <seq>gaggcaacatttatacaaattactccattttcagtagtacagattttgcagaaagctgacaagcacaagctaagatgatttatcggttaaatgatctgctgttgaagagtccactttaagtattaaatcgccggcatgtgtacgggctcggactcgggtttgggttcggattctaagtcggatcccgactcaaacgggtggagccgagctcgtggagcggttctcaagtcgctggtgctcgtcggaggagccttattgctccggcggctaactaagtcgactacacgttgggaccatgctcgaattgtcgcagagtcacttaacggtgaaaagtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7800" stop="6866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7500" g_stop="7168" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7068" g_stop="7064" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="338" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E200645" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7500" e_stop="7168"/>
          <exon e_start="7068" e_stop="7064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCAACATTTATACAAATTACTCCATTTTCAGTAGTACAGATTTTGCAGAAAGCTGACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAGGTACTTTTTTTGCGACTTACTGCTTTCTATCTCTGCTATCTTTTGGGTCTCTAGCACTGTGCAAGTGATAATAAATGATATTTTTGAGTTCTGTTGTAGTTTTC</genome_strand>
        <mrna_strand>GAGGCAACATTTATACAAATTACTCCATTTTCAGTAGTACAGATTTTGCAGAAAGCTGACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAATCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG...................................................................................................TTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374412" ref_strand="+" ref_description="SGN-E374412 [TUS-33-P14](-)">
      <seq>ggtttcaggaaagtggatctctggtacgattggcctaacaaaaggtacttgcacataaaccaataccaattggggaaaaaattgtacgacgttgaatggcagaacggcacttcattttacttcactttggattctacccaggaatgcacggtcaagcatttccctgtggggattttgagacctaattggcttgaaggtgcgaattatttgggccagaggtataaggatggatttctctgtaatgtttgggagaagattgatttcctacaatattatgaagatgttgctacccagatacctgtttattggcagttttatgatggattgatcgaacatattataacttttgaggtggggaaagtgctggaggattttaagtggcaagcccccgcttactgcttcaaggagatggagaaaggaaagttaacattgcaagatcgaaaagttgaagaccactcttttctcgctttgtttcatgacagaagatttaaaagtgacaaatgaacatagatgtatgacaaaaatatacctagtgccacttgaatatgcccatgttttgagtttgtagtgctaaatagtttgggacaaatacacacacattcctttgaacttgcacttttatatggcatgacattttagtgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10695" stop="9104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10395" g_stop="10074" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10073" i_stop="9724" i_length="350">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9723" g_stop="9401" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="645" r_length="323" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9400" i_stop="9337" i_length="64">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9336" g_stop="9330" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="652" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E374412" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10395" e_stop="10074"/>
          <exon e_start="9723" e_stop="9401"/>
          <exon e_start="9336" e_stop="9330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTCAGGAAAGTGGATCTCTGGTACGATTGGCCTAACAAAAGGTACTTGCACATAAACCAATACCAATTGGGGAAAAAATTGTACGACGTTGAATGGCAGAACGGCACTTCATTTTACTTCACTTTGGATTCTACCCAGGAATGCACGGTCAAGCATTTCCCTGTGGGGATTTTGAGACCTAATTGGCTTGAAGGTGCGAATTATTTGGGCCAGAGGTATAAGGATGGATTTCTCTGTAATGTTTGGGAGAAGATTGATTTCCTACACTATTATGAAGATGTTGCTACCCAGATACCTGTTTATTGGCAGTTTTATGATGGTATGTATGCTTTTATTATATGATTTTGAGCAATTCCTGTTAATATTCTAATTGAGTTAGACTGCTGATTCATTTAATTATATACATCAAAATTCCATATTCTTAAAAAAAAAAAAATCAGCATTTTTGCATACTCGTGTTCCGAATTTGGTTTTGGGTTTTGCAGGTTGTTAGAACACATTAATGAAGGATTTAAAATGTTATATAGTTTCTGTGTACATGAACAATAATCGTCTCGTGAGCTAGCGTTTTGTGTTAAGTTTAAACTTTAAAAGCTGTTTCTTTTTTCAGCCTCTCTAGATCTGCGCATGGTAATTTTTTGCTGGATATATATTTGTGAAATAATGCAGGATTGATCGAACATATTATAACTTTTGAGGTGGGGAAAGTGCTGGAGGATTCTAAGTGGCAAGCCCCCGCTTACTGCTTCAAGGAGATGGAGAAAGGAAAGTTAACATTGCAAGATCGAAAAGTTGAAGACCACTCTCTTCTCGCTTTGTTTCATGACAGAAGATTTAAAAGTGACAAATGAACATAGATGTATGACAAAAATATACCTAGTGCCACTTGAATATGCCCATGTTTTGAGTTTGTAGTGCTAAATAGTTTGGGACAAATACACACACATTCCTTTGAACTTGCACTTTTATATGGCATGACATTTTAGTGACTGGTCTGTATGTGTTTGATACACACTGAACAAAATATTACTTCAAGCTTATTTGTTTGTAATCTAGAACAAAA</genome_strand>
        <mrna_strand>GGTTTCAGGAAAGTGGATCTCTGGTACGATTGGCCTAACAAAAGGTACTTGCACATAAACCAATACCAATTGGGGAAAAAATTGTACGACGTTGAATGGCAGAACGGCACTTCATTTTACTTCACTTTGGATTCTACCCAGGAATGCACGGTCAAGCATTTCCCTGTGGGGATTTTGAGACCTAATTGGCTTGAAGGTGCGAATTATTTGGGCCAGAGGTATAAGGATGGATTTCTCTGTAATGTTTGGGAGAAGATTGATTTCCTACAATATTATGAAGATGTTGCTACCCAGATACCTGTTTATTGGCAGTTTTATGATG..............................................................................................................................................................................................................................................................................................................................................................GATTGATCGAACATATTATAACTTTTGAGGTGGGGAAAGTGCTGGAGGATTTTAAGTGGCAAGCCCCCGCTTACTGCTTCAAGGAGATGGAGAAAGGAAAGTTAACATTGCAAGATCGAAAAGTTGAAGACCACTCTTTTCTCGCTTTGTTTCATGACAGAAGATTTAAAAGTGACAAATGAACATAGATGTATGACAAAAATATACCTAGTGCCACTTGAATATGCCCATGTTTTGAGTTTGTAGTGCTAAATAGTTTGGGACAAATACACACACATTCCTTTGAACTTGCACTTTTATATGGCATGACATTTTAGTGAAAA................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293672" ref_strand="+" ref_description="SGN-E293672 [cLET-21-K7]">
      <seq>gaaagtggatctctggtacgattggcctaacaaaaggtacttgcacataaaccaataccaattggggaaaaaattgtacgacgttgaatggcagaacggcacttcattttacttcactttggattctacccaggaatgcacggtcaagcatttccctgtggggattttgagacctaattggcttgaaggtgcgaattatttgggccagaggtataaggatggatttctctgtaatgtttgggagaagattgatttcctacactattatgaagatgttgctacccagatacctgtttattggcagttttatgatggattgatcgaacatattataacttttgaggtggggaaagtgctggaggattctaagtggcaagcccccgcttactgcttcaaggagatggagaaaggaaagttaacattgcaagatcgaaaagttgaagaccactctcttctcgctttgtttcatgacagaagatttaaaagtgacaaatgaacatagatgtatgacaaaaatatacctagtgccacttgaatatgcccatgttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10687" stop="9187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10387" g_stop="10074" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10073" i_stop="9724" i_length="350">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9723" g_stop="9487" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="551" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E293672" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10387" e_stop="10074"/>
          <exon e_start="9723" e_stop="9487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTGGATCTCTGGTACGATTGGCCTAACAAAAGGTACTTGCACATAAACCAATACCAATTGGGGAAAAAATTGTACGACGTTGAATGGCAGAACGGCACTTCATTTTACTTCACTTTGGATTCTACCCAGGAATGCACGGTCAAGCATTTCCCTGTGGGGATTTTGAGACCTAATTGGCTTGAAGGTGCGAATTATTTGGGCCAGAGGTATAAGGATGGATTTCTCTGTAATGTTTGGGAGAAGATTGATTTCCTACACTATTATGAAGATGTTGCTACCCAGATACCTGTTTATTGGCAGTTTTATGATGGTATGTATGCTTTTATTATATGATTTTGAGCAATTCCTGTTAATATTCTAATTGAGTTAGACTGCTGATTCATTTAATTATATACATCAAAATTCCATATTCTTAAAAAAAAAAAAATCAGCATTTTTGCATACTCGTGTTCCGAATTTGGTTTTGGGTTTTGCAGGTTGTTAGAACACATTAATGAAGGATTTAAAATGTTATATAGTTTCTGTGTACATGAACAATAATCGTCTCGTGAGCTAGCGTTTTGTGTTAAGTTTAAACTTTAAAAGCTGTTTCTTTTTTCAGCCTCTCTAGATCTGCGCATGGTAATTTTTTGCTGGATATATATTTGTGAAATAATGCAGGATTGATCGAACATATTATAACTTTTGAGGTGGGGAAAGTGCTGGAGGATTCTAAGTGGCAAGCCCCCGCTTACTGCTTCAAGGAGATGGAGAAAGGAAAGTTAACATTGCAAGATCGAAAAGTTGAAGACCACTCTCTTCTCGCTTTGTTTCATGACAGAAGATTTAAAAGTGACAAATGAACATAGATGTATGACAAAAATATACCTAGTGCCACTTGAATATGCCCATGTTTTG</genome_strand>
        <mrna_strand>GAAAGTGGATCTCTGGTACGATTGGCCTAACAAAAGGTACTTGCACATAAACCAATACCAATTGGGGAAAAAATTGTACGACGTTGAATGGCAGAACGGCACTTCATTTTACTTCACTTTGGATTCTACCCAGGAATGCACGGTCAAGCATTTCCCTGTGGGGATTTTGAGACCTAATTGGCTTGAAGGTGCGAATTATTTGGGCCAGAGGTATAAGGATGGATTTCTCTGTAATGTTTGGGAGAAGATTGATTTCCTACACTATTATGAAGATGTTGCTACCCAGATACCTGTTTATTGGCAGTTTTATGATG..............................................................................................................................................................................................................................................................................................................................................................GATTGATCGAACATATTATAACTTTTGAGGTGGGGAAAGTGCTGGAGGATTCTAAGTGGCAAGCCCCCGCTTACTGCTTCAAGGAGATGGAGAAAGGAAAGTTAACATTGCAAGATCGAAAAGTTGAAGACCACTCTCTTCTCGCTTTGTTTCATGACAGAAGATTTAAAAGTGACAAATGAACATAGATGTATGACAAAAATATACCTAGTGCCACTTGAATATGCCCATGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350249" ref_strand="+" ref_description="SGN-E350249 [cTOS-4-J9]">
      <seq>aagaatactttctgaccagccagagggccataagatatatatgaattgctattgcccaggttgggtgaagactgccatgactgattgggctgggcatacatctcctgaagtagctgctgatactgcagtctggcttgctcttacctcagatcagattgtgagtggtaagttttttgctgagaggcgtgaaataaacttctaaagtgggaattgaagacaaattcaggaatcagcccagtttcttttgcttttgaacgaaaatgtgatacgagtacttataaaaactagagtactcatgttacaagatgctagcaagagcctactgaaaattgatattgttaatgggaaacaatatgtattggtacaagttgttacctagtcgtcaaactctagaggatgtgttaactttggggagagctgaagcctgaaagggtggtctggttttctaataatcacatcgacacatcctagataagatcatttgcctgtaccatttgtaacttttagtacagattagcaatacatactacagcatattggatagctaaactacttaaaatatgtcttctttaattataagcattaacctgttttaaaaatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11870" stop="10670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11570" g_stop="10961" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E350249" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11570" e_stop="10961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATACTTTCTGACCAGCCAGAGGGCCATAAGATATATATGAATTGCTATTGCCCAGGTTGGGTGAAGACTGCCATGACTGATTGGGCTGGGCATACATCTCCTGAAGTAGCTGCTGATACTGCAGTCTGGCTTGCTCTTACCTCAGATCAGATTGTGAGTGGTAAGTTTTTTGCTGAGAGGCGTGAAATAAACTTCTAAAGTGGGAATTGAAGACAAATTCAGGAATCAGCCCAGTTTCTTTTGCTTTTGAACGAAAATGTGATACGAGTACTTATAAAAACTAGAGTACTCATGTTACAAGATGCTAGCAAGAGCCTACTGAAAATTGATATTGTTAATGGGAAACAATATGTATTGGTACAAGTTGTTACCTAGTCGTCAAACTCTAGAGGATGTGTTAACTTTGGGGAGAGCTGAAGCCTGAAAGGGTGGTCTGGTTTTCTAATAATCACATCGACACATCCTAGATAAGATCATTTGCCTGTACCATTTGTAACTTTTAGTACAGATTAGCAATACATACTACAGCATATTGGATAGCT-AACTACTTAAAATATGTCTTCTTTAATTATAAGCATT-AGCTGTTTTAAAAGATCACTTAATCGA</genome_strand>
        <mrna_strand>AAGAATACTTTCTGACCAGCCAGAGGGCCATAAGATATATATGAATTGCTATTGCCCAGGTTGGGTGAAGACTGCCATGACTGATTGGGCTGGGCATACATCTCCTGAAGTAGCTGCTGATACTGCAGTCTGGCTTGCTCTTACCTCAGATCAGATTGTGAGTGGTAAGTTTTTTGCTGAGAGGCGTGAAATAAACTTCTAAAGTGGGAATTGAAGACAAATTCAGGAATCAGCCCAGTTTCTTTTGCTTTTGAACGAAAATGTGATACGAGTACTTATAAAAACTAGAGTACTCATGTTACAAGATGCTAGCAAGAGCCTACTGAAAATTGATATTGTTAATGGGAAACAATATGTATTGGTACAAGTTGTTACCTAGTCGTCAAACTCTAGAGGATGTGTTAACTTTGGGGAGAGCTGAAGCCTGAAAGGGTGGTCTGGTTTTCTAATAATCACATCGACACATCCTAGATAAGATCATTTGCCTGTACCATTTGTAACTTTTAGTACAGATTAGCAATACATACTACAGCATATTGGATAGCTAAACTACTTAAAATATGTCTTCTTTAATTATAAGCATTAACCTGTTTTAAAA-ATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745960" ref_strand="+" ref_description="SGN-E745960 [GI|47105442]">
      <seq>gaaaccaaaacaaaatctggaaatgagtagtgaaacaaggtgaagaagaatagctcgagcttaaaaccctactagtcgaagaattaatgggtaaaaaggagagggcgcaagagagaagagagcagagacgccaagagatctctcttctccgtactattccttattctgatcaacaaagatggtggtcaaatgaaactatcgctgtcgtgactggttcaaacagaggaattggttttgaaattgctcaccaactggcctcacatggcttaacagtagttcttacatcacgagagactcgtgttggtgaagaagcaacgaaaatcatgcaagaaaaaggtttgaatgtggtatttcatcaattggatattgtagaccctgtatcagttgaaacattttctgactggataaaggaaaactatggtggcttagatatactgatcaataatgcaggagtcaatttcaatttcggcacagataattcagtggaatatgcagaaactgttattcagaccaactactttggcaccaaaagtatgactaaagctatgattccattaatgaggccgtctccttttggcgctcgaattgttaatgtgacctcacgactggggagacttaacggcagaaggaatagaattgcaaatgtcagcttgagacaacaactggaggatgtggattctctatcagaggaactgattgatagtactgtgaactcatttttggaacaagtaaaaaatggaacttgggaatctgggggatggccacaagtattcacagactactcattgtcgaagcttgctgctaatgcttacaccaggctaatggcaagaatactttctgaccagccagagggccataagatatatatgaattgctattgcccaggttgggtgaagactgccatgactgattgggctgggcatacatctcctgaagtagctgctgatactgcagtctggcttgctcttacctcagatcagattgtgagtggtaagttttttgctgagaggcgtgaaataaacttctaaagtgggaattgaagacaaattcaggaatcagcccagtttcttttgcttttgaacgaaaatgtgatacgagtacttataaaaactagagtactcatgttacaagatgctagcaagagcctactgaaaattgatattgttaatgggaaacaatatgtattggtacaagttgttacctagtcgtcaaactctagaggatgtgttaactttggggagagctgaagcctgaaagggtggtctggttttctaataatcacatcgacacatcctagataagatcatttgcctgtaccatttgtaacttttagtacagattagcaatacatactacagcatattgcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14492" stop="10728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14192" g_stop="14015" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14014" i_stop="13042" i_length="973">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13041" g_stop="12783" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="437" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12782" i_stop="12212" i_length="571">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12211" g_stop="12017" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="632" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12016" i_stop="11765" i_length="252">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11764" g_stop="11013" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="1384" r_length="752" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E745960" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14192" e_stop="14015"/>
          <exon e_start="13041" e_stop="12783"/>
          <exon e_start="12211" e_stop="12017"/>
          <exon e_start="11764" e_stop="11013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCAAAACAAAATCTGGAAATGAGTAGTGAAACAAGGTGAAGAAGAATAGCTCGAGCTTAAAACCCTACTAGTCGAAGAATTAATGGGTAAAAAGGAGAGGGCGCAAGAGAGAAGAGAGCAGAGACGCCAAGAGATCTCTCTTCTCCGTACTATTCCTTATTCTGATCAACAAAGGTGAGAGTTCTTTGATCCATAAAAAAAAACTTTCTTGATATGTTTTGCATTTTGTTCTCAATTGAGTCGAAAATATCCGTGTCTGAATTGAGGGTTTCTGCATTTGATTCAGAGGAAAAATGACAAGTCAAAGGGTCTAACTGTTAAGTGTATAATTTTGCCCTGTAGCTTTAGCATTGGGTTTTAGTTAAATCAACAAGAGTGGAAACTGTGTGTAGATAATGGAACGGTCTCTAGTGTATTCAATTTTGACATACTTGAATATGATAGTTAAGATGACAAACTCAAAAAGCATGTAGTTAGTATGTAAGGAAATGTTTTTAGGTTGAAGATTGTTTATGTGTTCTTATGCTTATTGGACAAACAACTCTGCAGTTCAAAATTCAAATGTTGCAGTTTGGATTCTAATAGTGTGACCATATTGTTCTCTTAGAAGTATGTTTTTGCTACAACGAAATTAGAAAGATGTGAGGTGTTTTAAGAACCCCATTCAGAGAACAGAAACCTAAAACGGAAATGCTTGGTGCATAATTTCTGCATGTTTACTCTAGTATTGTTAGATGGGAAACAATGAATGGGAAACAATGACATCGTTGATTGTCTAATCAGCTTAATAGCAGATTTAGAGAAGAAATATGAGATTATTGATTTGGTGTACAGTTGGTTTACTTCCATTCTTCCAAGCTGCCTCTGTACTTCATCTATGGTCTATGCAACATATCATAAGAGTTCCTATGAATCATAACCTAAAATGACTGTATCATTGGAAAATTGTTGGTTCTTTGATTACTTGGCAATCAGTTTCGGTAATTAACTAAGATGACGCTCCAAAGTGTTTTGATAATCTTTTGGCTTATTGTTCCTATTAGTTATCGGAAGATCTGGATAATTACGCTCCAAAGTGTTTTGATTATGGTTTACTTTACGGTGTTGATTCTGAGCATTACACTTATAGACGGAAGATGATTTTCAGATGGTGGTCAAATGAAACTATCGCTGTCGTGACTGGTTCAAACAGAGGAATTGGTTTTGAAATTGCTCACCAACTGGCCTCACATGGCTTAACAGTAGTTCTTACATCACGAGAGACTCGTGTTGGTGAAGAAGCAACGAAAATCATGCAAGAAAAAGGTTTGAATGTGGTATTTCATCAATTGGATATTGTAGACCCTGTATCAGTTGAAACATTTTCTGACTGGATAAAGGAAAACTATGGTGGCTTAGATATACTGGTAATCCATCTACTCTATTTTCTCTATATAATCTAGCATTGGTCCATCTACTCCATGATATCTTTATGATGATGATACAATATGAGCTTAAATGATGAAATGGGGATTCATATAGCCGACCCCAACTTATTTGGGACTGAGACGTGTTGTTTGTAATCTAGCATTGATCCAGTCGCATATACATCCAGTTGCAGAGCCACCTTGTACAAAGGGATGTCAATAGACCCGCCTTTACTGCAAAATACATTGCTTAGATAGAAATTTTTTAATGCTTATACTATATGTTGAATCCCTTTAATTCCTCGTGTGGTTACTTCTTTATATGTTGACTCCAGTTAGTGAAATCCTTGCTTCATTACTGTGTAAAACCGTACTGGTTACAAAAGCTTACTACCAGGTGCTAATTTTTCTTGTACTTCACAGTTTATGTTCTTAGTTATTATTTTTTCATTTTCCTTTTATTTTGTTTGGGGTGGGGGGGTGTTATTTTACTTTCATGCGGTTATCAATTTTGTCTGTTAACTGTTTTGGCAAATCTGGCCCTTTCAGCTAATGATATGGAAGTATTTAGATCAATAATGCAGGAGTCAATTTCAATTTCGGCACAGATAATTCAGTGGAATATGCAGAAACTGTTATTCAGACCAACTACTTTGGCACCAAAAGTATGACTAAAGCTATGATTCCATTAATGAGGCCGTCTCCTTTTGGCGCTCGAATTGTTAATGTGACCTCACGACTGGGGAGACTTAACGGCAGAAGGAATGTAAGTGCCTTACTCTTCCTTTTCATTCTTATTCTTCTTCTCACTCTTATTGCCCTTGTTCATCTTGTCTGAAGAGTATTTCTTTTTTTCTTTTACTTCATAGTCAAGTTTTTTTCAGTACTGCACCCTTGTAATGCTTCATAGGAGATATTTGTTATTTGTCAAAAGCAACAACTTCTTGAGTTCTCTAATATGCAAATAGCTTTTATTTTCACATCTCAAAATGATCTACTTCTGTTTGATGCCCACCAGAGAATTGCAAATGTCAGCTTGAGACAACAACTGGAGGATGTGGATTCTCTATCAGAGGAACTGATTGATAGTACTGTGAACTCATTTTTGGAACAAGTAAAAAATGGAACTTGGGAATCTGGGGGATGGCCACAAGTATTCACAGACTACTCATTGTCGAAGCTTGCTGCTAATGCTTACACCAGGCTAATGGCAAGAATACTTTCTGACCAGCCAGAGGGCCATAAGATATATATGAATTGCTATTGCCCAGGTTGGGTGAAGACTGCCATGACTGATTGGGCTGGGCATACATCTCCTGAAGTAGCTGCTGATACTGCAGTCTGGCTTGCTCTTACCTCAGATCAGATTGTGAGTGGTAAGTTTTTTGCTGAGAGGCGTGAAATAAACTTCTAAAGTGGGAATTGAAGACAAATTCAGGAATCAGCCCAGTTTCTTTTGCTTTTGAACGAAAATGTGATACGAGTACTTATAAAAACTAGAGTACTCATGTTACAAGATGCTAGCAAGAGCCTACTGAAAATTGATATTGTTAATGGGAAACAATATGTATTGGTACAAGTTGTTACCTAGTCGTCAAACTCTAGAGGATGTGTTAACTTTGGGGAGAGCTGAAGCCTGAAAGGGTGGTCTGGTTTTCTAATAATCACATCGACACATCCTAGATAAGATCATTTGCCTGTACCATTTGTAACTTTTAGTACAGATTAGCAATACATACTACAGCATATTGGATAGCTAACTACTTAAAA</genome_strand>
        <mrna_strand>GAAACCAAAACAAAATCTGGAAATGAGTAGTGAAACAAGGTGAAGAAGAATAGCTCGAGCTTAAAACCCTACTAGTCGAAGAATTAATGGGTAAAAAGGAGAGGGCGCAAGAGAGAAGAGAGCAGAGACGCCAAGAGATCTCTCTTCTCCGTACTATTCCTTATTCTGATCAACAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGGTCAAATGAAACTATCGCTGTCGTGACTGGTTCAAACAGAGGAATTGGTTTTGAAATTGCTCACCAACTGGCCTCACATGGCTTAACAGTAGTTCTTACATCACGAGAGACTCGTGTTGGTGAAGAAGCAACGAAAATCATGCAAGAAAAAGGTTTGAATGTGGTATTTCATCAATTGGATATTGTAGACCCTGTATCAGTTGAAACATTTTCTGACTGGATAAAGGAAAACTATGGTGGCTTAGATATACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATAATGCAGGAGTCAATTTCAATTTCGGCACAGATAATTCAGTGGAATATGCAGAAACTGTTATTCAGACCAACTACTTTGGCACCAAAAGTATGACTAAAGCTATGATTCCATTAATGAGGCCGTCTCCTTTTGGCGCTCGAATTGTTAATGTGACCTCACGACTGGGGAGACTTAACGGCAGAAGGAAT............................................................................................................................................................................................................................................................AGAATTGCAAATGTCAGCTTGAGACAACAACTGGAGGATGTGGATTCTCTATCAGAGGAACTGATTGATAGTACTGTGAACTCATTTTTGGAACAAGTAAAAAATGGAACTTGGGAATCTGGGGGATGGCCACAAGTATTCACAGACTACTCATTGTCGAAGCTTGCTGCTAATGCTTACACCAGGCTAATGGCAAGAATACTTTCTGACCAGCCAGAGGGCCATAAGATATATATGAATTGCTATTGCCCAGGTTGGGTGAAGACTGCCATGACTGATTGGGCTGGGCATACATCTCCTGAAGTAGCTGCTGATACTGCAGTCTGGCTTGCTCTTACCTCAGATCAGATTGTGAGTGGTAAGTTTTTTGCTGAGAGGCGTGAAATAAACTTCTAAAGTGGGAATTGAAGACAAATTCAGGAATCAGCCCAGTTTCTTTTGCTTTTGAACGAAAATGTGATACGAGTACTTATAAAAACTAGAGTACTCATGTTACAAGATGCTAGCAAGAGCCTACTGAAAATTGATATTGTTAATGGGAAACAATATGTATTGGTACAAGTTGTTACCTAGTCGTCAAACTCTAGAGGATGTGTTAACTTTGGGGAGAGCTGAAGCCTGAAAGGGTGGTCTGGTTTTCTAATAATCACATCGACACATCCTAGATAAGATCATTTGCCTGTACCATTTGTAACTTTTAGTACAGATTAGCAATACATACTACAGCATATTGCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284795" ref_strand="+" ref_description="SGN-E284795 [cLES-3-J6]">
      <seq>ttacaccaggctaatggcaagaatactttctgaccagccagagggccataagatatatatgaattgctattgcccaggttgggtgaagactgccatgactgattgggctgggcatacatctcctgaagtagctgctgatactgcagtctggcttgctcttacctcagatcagattgtgagtggtaagttttttgctgagaggcgtgaaataaacttctaaagtgggaattgaagacaaattcaggaatcagcccagtttcttttgcttttgaacgaaaatgtgatacgagtacttataaaaactagagtactcatgttacaagatgctagcaagagcctactgaaaattgatattgttaatgggaaacaatatgtattggtacaagttgttacctagtcgtcaaactctagaggatgtgttaactttggggagagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11888" stop="10852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11588" g_stop="11152" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E284795" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11588" e_stop="11152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACACCAGGCTAATGGCAAGAATACTTTCTGACCAGCCAGAGGGCCATAAGATATATATGAATTGCTATTGCCCAGGTTGGGTGAAGACTGCCATGACTGATTGGGCTGGGCATACATCTCCTGAAGTAGCTGCTGATACTGCAGTCTGGCTTGCTCTTACCTCAGATCAGATTGTGAGTGGTAAGTTTTTTGCTGAGAGGCGTGAAATAAACTTCTAAAGTGGGAATTGAAGACAAATTCAGGAATCAGCCCAGTTTCTTTTGCTTTTGAACGAAAATGTGATACGAGTACTTATAAAAACTAGAGTACTCATGTTACAAGATGCTAGCAAGAGCCTACTGAAAATTGATATTGTTAATGGGAAACAATATGTATTGGTACAAGTTGTTACCTAGTCGTCAAACTCTAGAGGATGTGTTAACTTTGGGGAGAGCT</genome_strand>
        <mrna_strand>TTACACCAGGCTAATGGCAAGAATACTTTCTGACCAGCCAGAGGGCCATAAGATATATATGAATTGCTATTGCCCAGGTTGGGTGAAGACTGCCATGACTGATTGGGCTGGGCATACATCTCCTGAAGTAGCTGCTGATACTGCAGTCTGGCTTGCTCTTACCTCAGATCAGATTGTGAGTGGTAAGTTTTTTGCTGAGAGGCGTGAAATAAACTTCTAAAGTGGGAATTGAAGACAAATTCAGGAATCAGCCCAGTTTCTTTTGCTTTTGAACGAAAATGTGATACGAGTACTTATAAAAACTAGAGTACTCATGTTACAAGATGCTAGCAAGAGCCTACTGAAAATTGATATTGTTAATGGGAAACAATATGTATTGGTACAAGTTGTTACCTAGTCGTCAAACTCTAGAGGATGTGTTAACTTTGGGGAGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284639" ref_strand="+" ref_description="SGN-E284639 [cLES-3-J8]">
      <seq>agagtgagagagagagatagagatactttgtgaccagccagagggccataagatatatatgaattgctattgcccaggttgggtgaagactgccatgactgattgggctgggcatacatctcctgaagtagctgctgatactgcagtctggcttgctcttacctcagatcagattgtgagtggtaagttttttgctgagaggcgtgaaataaacttctaaagtgggaattgaagacaaattcaggaatcagcccaggttcttttgcttttgaacgaaaatgtgatacgagtacttataaaaactagagtactcaatgtacaagatgctagcaagagcctactgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11869" stop="10943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11567" g_stop="11243" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="346" r_length="325" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E284639" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11567" e_stop="11243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACTTTCTGACCAGCCAGAGGGCCATAAGATATATATGAATTGCTATTGCCCAGGTTGGGTGAAGACTGCCATGACTGATTGGGCTGGGCATACATCTCCTGAAGTAGCTGCTGATACTGCAGTCTGGCTTGCTCTTACCTCAGATCAGATTGTGAGTGGTAAGTTTTTTGCTGAGAGGCGTGAAATAAACTTCTAAAGTGGGAATTGAAGACAAATTCAGGAATCAGCCCAGTTTCTTTTGCTTTTGAACGAAAATGTGATACGAGTACTTATAAAAACTAGAGTACTCATGTTACAAGATGCTAGCAAGAGCCTACTGAAA</genome_strand>
        <mrna_strand>GATACTTTGTGACCAGCCAGAGGGCCATAAGATATATATGAATTGCTATTGCCCAGGTTGGGTGAAGACTGCCATGACTGATTGGGCTGGGCATACATCTCCTGAAGTAGCTGCTGATACTGCAGTCTGGCTTGCTCTTACCTCAGATCAGATTGTGAGTGGTAAGTTTTTTGCTGAGAGGCGTGAAATAAACTTCTAAAGTGGGAATTGAAGACAAATTCAGGAATCAGCCCAGGTTCTTTTGCTTTTGAACGAAAATGTGATACGAGTACTTATAAAAACTAGAGTACTCAATGTACAAGATGCTAGCAAGAGCCTACTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336227" ref_strand="+" ref_description="SGN-E336227 [cTOE-10-J23]">
      <seq>ttaacggcagaaggaatagaattgcaaatgtcagcttgagacaacaactggaggatgtggattctctatcagaggaactgattgatagtactgtgaactcatttttggaacaagtaaaaaatggaacttgggaatctgggggatggccacaagtattcacagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12333" stop="11318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12033" g_stop="12017" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12016" i_stop="11765" i_length="252">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11764" g_stop="11618" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="164" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E336227" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>164</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12033" e_stop="12017"/>
          <exon e_start="11764" e_stop="11618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACGGCAGAAGGAATGTAAGTGCCTTACTCTTCCTTTTCATTCTTATTCTTCTTCTCACTCTTATTGCCCTTGTTCATCTTGTCTGAAGAGTATTTCTTTTTTTCTTTTACTTCATAGTCAAGTTTTTTTCAGTACTGCACCCTTGTAATGCTTCATAGGAGATATTTGTTATTTGTCAAAAGCAACAACTTCTTGAGTTCTCTAATATGCAAATAGCTTTTATTTTCACATCTCAAAATGATCTACTTCTGTTTGATGCCCACCAGAGAATTGCAAATGTCAGCTTGAGACAACAACTGGAGGATGTGGATTCTCTATCAGAGGAACTGATTGATAGTACTGTGAACTCATTTTTGGAACAAGTAAAAAATGGAACTTGGGAATCTGGGGGATGGCCACAAGTATTCACAGAC</genome_strand>
        <mrna_strand>TTAACGGCAGAAGGAAT............................................................................................................................................................................................................................................................AGAATTGCAAATGTCAGCTTGAGACAACAACTGGAGGATGTGGATTCTCTATCAGAGGAACTGATTGATAGTACTGTGAACTCATTTTTGGAACAAGTAAAAAATGGAACTTGGGAATCTGGGGGATGGCCACAAGTATTCACAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346200" ref_strand="+" ref_description="SGN-E346200 [cTOF-23-I1]">
      <seq>aaatgagtagtgaaacaaggtgaagaagaatagctcgagcttaaaaccctactagtcgaagaattaatgggtaaaaaggagagggcgcaagagagaagagagcagagacgccaagagatctctcttctccgtactattccttattctgatcaacaaagatggtggtcaaatgaaactatcgctgtcgtgactggttcaaacagaggaattggttttgaaattgctcaccaactggcctcacatggcttaacagtagttcttacatcacgagagactcgtgttggtgaagaagcaacgaaaatcatgcaagaaaaaggtttgaatgtggtatttcatcaattggatattgtagaccctgtatcagttgaaacattttctgactggataaaggaaaactatggtggcttagatatactgatcaataatgcaggagtcaatttcaatttcggcacagataattcagtggaatatgcagaaactgttattcagaccaactactttggcaccaaaagtatgactaaagctatgattccattaatgaggccgtctccttttggcgctcgaattgttaatgtgacctcacgactggggagacttaacggcagaaggaatagaattgcaaatgtcagcttgagacaacaactggaggatgtggattctctatcagaggaactgattgatagtactgtgaactcatttttggaacaagtaaaaaatggaacttgggaatctgggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14472" stop="11338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14172" g_stop="14015" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14014" i_stop="13042" i_length="973">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13041" g_stop="12783" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="417" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12782" i_stop="12212" i_length="571">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12211" g_stop="12017" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="612" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12016" i_stop="11765" i_length="252">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11764" g_stop="11638" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="739" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E346200" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14172" e_stop="14015"/>
          <exon e_start="13041" e_stop="12783"/>
          <exon e_start="12211" e_stop="12017"/>
          <exon e_start="11764" e_stop="11638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGAGTAGTGAAACAAGGTGAAGAAGAATAGCTCGAGCTTAAAACCCTACTAGTCGAAGAATTAATGGGTAAAAAGGAGAGGGCGCAAGAGAGAAGAGAGCAGAGACGCCAAGAGATCTCTCTTCTCCGTACTATTCCTTATTCTGATCAACAAAGGTGAGAGTTCTTTGATCCATAAAAAAAAACTTTCTTGATATGTTTTGCATTTTGTTCTCAATTGAGTCGAAAATATCCGTGTCTGAATTGAGGGTTTCTGCATTTGATTCAGAGGAAAAATGACAAGTCAAAGGGTCTAACTGTTAAGTGTATAATTTTGCCCTGTAGCTTTAGCATTGGGTTTTAGTTAAATCAACAAGAGTGGAAACTGTGTGTAGATAATGGAACGGTCTCTAGTGTATTCAATTTTGACATACTTGAATATGATAGTTAAGATGACAAACTCAAAAAGCATGTAGTTAGTATGTAAGGAAATGTTTTTAGGTTGAAGATTGTTTATGTGTTCTTATGCTTATTGGACAAACAACTCTGCAGTTCAAAATTCAAATGTTGCAGTTTGGATTCTAATAGTGTGACCATATTGTTCTCTTAGAAGTATGTTTTTGCTACAACGAAATTAGAAAGATGTGAGGTGTTTTAAGAACCCCATTCAGAGAACAGAAACCTAAAACGGAAATGCTTGGTGCATAATTTCTGCATGTTTACTCTAGTATTGTTAGATGGGAAACAATGAATGGGAAACAATGACATCGTTGATTGTCTAATCAGCTTAATAGCAGATTTAGAGAAGAAATATGAGATTATTGATTTGGTGTACAGTTGGTTTACTTCCATTCTTCCAAGCTGCCTCTGTACTTCATCTATGGTCTATGCAACATATCATAAGAGTTCCTATGAATCATAACCTAAAATGACTGTATCATTGGAAAATTGTTGGTTCTTTGATTACTTGGCAATCAGTTTCGGTAATTAACTAAGATGACGCTCCAAAGTGTTTTGATAATCTTTTGGCTTATTGTTCCTATTAGTTATCGGAAGATCTGGATAATTACGCTCCAAAGTGTTTTGATTATGGTTTACTTTACGGTGTTGATTCTGAGCATTACACTTATAGACGGAAGATGATTTTCAGATGGTGGTCAAATGAAACTATCGCTGTCGTGACTGGTTCAAACAGAGGAATTGGTTTTGAAATTGCTCACCAACTGGCCTCACATGGCTTAACAGTAGTTCTTACATCACGAGAGACTCGTGTTGGTGAAGAAGCAACGAAAATCATGCAAGAAAAAGGTTTGAATGTGGTATTTCATCAATTGGATATTGTAGACCCTGTATCAGTTGAAACATTTTCTGACTGGATAAAGGAAAACTATGGTGGCTTAGATATACTGGTAATCCATCTACTCTATTTTCTCTATATAATCTAGCATTGGTCCATCTACTCCATGATATCTTTATGATGATGATACAATATGAGCTTAAATGATGAAATGGGGATTCATATAGCCGACCCCAACTTATTTGGGACTGAGACGTGTTGTTTGTAATCTAGCATTGATCCAGTCGCATATACATCCAGTTGCAGAGCCACCTTGTACAAAGGGATGTCAATAGACCCGCCTTTACTGCAAAATACATTGCTTAGATAGAAATTTTTTAATGCTTATACTATATGTTGAATCCCTTTAATTCCTCGTGTGGTTACTTCTTTATATGTTGACTCCAGTTAGTGAAATCCTTGCTTCATTACTGTGTAAAACCGTACTGGTTACAAAAGCTTACTACCAGGTGCTAATTTTTCTTGTACTTCACAGTTTATGTTCTTAGTTATTATTTTTTCATTTTCCTTTTATTTTGTTTGGGGTGGGGGGGTGTTATTTTACTTTCATGCGGTTATCAATTTTGTCTGTTAACTGTTTTGGCAAATCTGGCCCTTTCAGCTAATGATATGGAAGTATTTAGATCAATAATGCAGGAGTCAATTTCAATTTCGGCACAGATAATTCAGTGGAATATGCAGAAACTGTTATTCAGACCAACTACTTTGGCACCAAAAGTATGACTAAAGCTATGATTCCATTAATGAGGCCGTCTCCTTTTGGCGCTCGAATTGTTAATGTGACCTCACGACTGGGGAGACTTAACGGCAGAAGGAATGTAAGTGCCTTACTCTTCCTTTTCATTCTTATTCTTCTTCTCACTCTTATTGCCCTTGTTCATCTTGTCTGAAGAGTATTTCTTTTTTTCTTTTACTTCATAGTCAAGTTTTTTTCAGTACTGCACCCTTGTAATGCTTCATAGGAGATATTTGTTATTTGTCAAAAGCAACAACTTCTTGAGTTCTCTAATATGCAAATAGCTTTTATTTTCACATCTCAAAATGATCTACTTCTGTTTGATGCCCACCAGAGAATTGCAAATGTCAGCTTGAGACAACAACTGGAGGATGTGGATTCTCTATCAGAGGAACTGATTGATAGTACTGTGAACTCATTTTTGGAACAAGTAAAAAATGGAACTTGGGAATCTGGGGGAT</genome_strand>
        <mrna_strand>AAATGAGTAGTGAAACAAGGTGAAGAAGAATAGCTCGAGCTTAAAACCCTACTAGTCGAAGAATTAATGGGTAAAAAGGAGAGGGCGCAAGAGAGAAGAGAGCAGAGACGCCAAGAGATCTCTCTTCTCCGTACTATTCCTTATTCTGATCAACAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGGTCAAATGAAACTATCGCTGTCGTGACTGGTTCAAACAGAGGAATTGGTTTTGAAATTGCTCACCAACTGGCCTCACATGGCTTAACAGTAGTTCTTACATCACGAGAGACTCGTGTTGGTGAAGAAGCAACGAAAATCATGCAAGAAAAAGGTTTGAATGTGGTATTTCATCAATTGGATATTGTAGACCCTGTATCAGTTGAAACATTTTCTGACTGGATAAAGGAAAACTATGGTGGCTTAGATATACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATAATGCAGGAGTCAATTTCAATTTCGGCACAGATAATTCAGTGGAATATGCAGAAACTGTTATTCAGACCAACTACTTTGGCACCAAAAGTATGACTAAAGCTATGATTCCATTAATGAGGCCGTCTCCTTTTGGCGCTCGAATTGTTAATGTGACCTCACGACTGGGGAGACTTAACGGCAGAAGGAAT............................................................................................................................................................................................................................................................AGAATTGCAAATGTCAGCTTGAGACAACAACTGGAGGATGTGGATTCTCTATCAGAGGAACTGATTGATAGTACTGTGAACTCATTTTTGGAACAAGTAAAAAATGGAACTTGGGAATCTGGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345758" ref_strand="+" ref_description="SGN-E345758 [cTOF-18-E7]">
      <seq>cttgctctaaaactctgaaaccaaaacaaaatctggaaatgagtagtgaaacaaggtgaagaagaatagctcgagcttaaaaccctactagtcgaagaattaatgggtaaaaaggagagggcgcaagagagaagagagcagagacgccaagagatctctcttctccgtactattccttattctgatcaacaaagatggtggtcaaatgaaactatcgctgtcgtgactggttcaaacagaggaattggttttgaaattgctcaccaactggcctcacatggcttaacagtagttcttacatcacgagagactcgtgttggtgaagaagcaacgaaaatcatgcaagaaaaaggtttgaatgtggtatttcatcaattggatattgtagaccctgtatcagttgaaacattttctgactggataaaggaaaactatggtggcttagatatactgatcaataatgcaggagtcaatttcaatttcggcacagataattcagtggaatatgcagaaactgttattcagaccaactactttggcaccaaaagtatgactaaagctatgattccattaatgaggccgtctccttttggcgctcgaattgttaatgtgacctcacgactggggagacttaacggcagaaggaatagaattgcaaatgtcagcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14508" stop="11443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14208" g_stop="14015" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14014" i_stop="13042" i_length="973">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13041" g_stop="12783" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="453" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12782" i_stop="12212" i_length="571">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12211" g_stop="12017" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="648" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12016" i_stop="11765" i_length="252">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11764" g_stop="11743" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="670" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E345758" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14208" e_stop="14015"/>
          <exon e_start="13041" e_stop="12783"/>
          <exon e_start="12211" e_stop="12017"/>
          <exon e_start="11764" e_stop="11743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTCTAAAACTCTGAAACCAAAACAAAATCTGGAAATGAGTAGTGAAACAAGGTGAAGAAGAATAGCTCGAGCTTAAAACCCTACTAGTCGAAGAATTAATGGGTAAAAAGGAGAGGGCGCAAGAGAGAAGAGAGCAGAGACGCCAAGAGATCTCTCTTCTCCGTACTATTCCTTATTCTGATCAACAAAGGTGAGAGTTCTTTGATCCATAAAAAAAAACTTTCTTGATATGTTTTGCATTTTGTTCTCAATTGAGTCGAAAATATCCGTGTCTGAATTGAGGGTTTCTGCATTTGATTCAGAGGAAAAATGACAAGTCAAAGGGTCTAACTGTTAAGTGTATAATTTTGCCCTGTAGCTTTAGCATTGGGTTTTAGTTAAATCAACAAGAGTGGAAACTGTGTGTAGATAATGGAACGGTCTCTAGTGTATTCAATTTTGACATACTTGAATATGATAGTTAAGATGACAAACTCAAAAAGCATGTAGTTAGTATGTAAGGAAATGTTTTTAGGTTGAAGATTGTTTATGTGTTCTTATGCTTATTGGACAAACAACTCTGCAGTTCAAAATTCAAATGTTGCAGTTTGGATTCTAATAGTGTGACCATATTGTTCTCTTAGAAGTATGTTTTTGCTACAACGAAATTAGAAAGATGTGAGGTGTTTTAAGAACCCCATTCAGAGAACAGAAACCTAAAACGGAAATGCTTGGTGCATAATTTCTGCATGTTTACTCTAGTATTGTTAGATGGGAAACAATGAATGGGAAACAATGACATCGTTGATTGTCTAATCAGCTTAATAGCAGATTTAGAGAAGAAATATGAGATTATTGATTTGGTGTACAGTTGGTTTACTTCCATTCTTCCAAGCTGCCTCTGTACTTCATCTATGGTCTATGCAACATATCATAAGAGTTCCTATGAATCATAACCTAAAATGACTGTATCATTGGAAAATTGTTGGTTCTTTGATTACTTGGCAATCAGTTTCGGTAATTAACTAAGATGACGCTCCAAAGTGTTTTGATAATCTTTTGGCTTATTGTTCCTATTAGTTATCGGAAGATCTGGATAATTACGCTCCAAAGTGTTTTGATTATGGTTTACTTTACGGTGTTGATTCTGAGCATTACACTTATAGACGGAAGATGATTTTCAGATGGTGGTCAAATGAAACTATCGCTGTCGTGACTGGTTCAAACAGAGGAATTGGTTTTGAAATTGCTCACCAACTGGCCTCACATGGCTTAACAGTAGTTCTTACATCACGAGAGACTCGTGTTGGTGAAGAAGCAACGAAAATCATGCAAGAAAAAGGTTTGAATGTGGTATTTCATCAATTGGATATTGTAGACCCTGTATCAGTTGAAACATTTTCTGACTGGATAAAGGAAAACTATGGTGGCTTAGATATACTGGTAATCCATCTACTCTATTTTCTCTATATAATCTAGCATTGGTCCATCTACTCCATGATATCTTTATGATGATGATACAATATGAGCTTAAATGATGAAATGGGGATTCATATAGCCGACCCCAACTTATTTGGGACTGAGACGTGTTGTTTGTAATCTAGCATTGATCCAGTCGCATATACATCCAGTTGCAGAGCCACCTTGTACAAAGGGATGTCAATAGACCCGCCTTTACTGCAAAATACATTGCTTAGATAGAAATTTTTTAATGCTTATACTATATGTTGAATCCCTTTAATTCCTCGTGTGGTTACTTCTTTATATGTTGACTCCAGTTAGTGAAATCCTTGCTTCATTACTGTGTAAAACCGTACTGGTTACAAAAGCTTACTACCAGGTGCTAATTTTTCTTGTACTTCACAGTTTATGTTCTTAGTTATTATTTTTTCATTTTCCTTTTATTTTGTTTGGGGTGGGGGGGTGTTATTTTACTTTCATGCGGTTATCAATTTTGTCTGTTAACTGTTTTGGCAAATCTGGCCCTTTCAGCTAATGATATGGAAGTATTTAGATCAATAATGCAGGAGTCAATTTCAATTTCGGCACAGATAATTCAGTGGAATATGCAGAAACTGTTATTCAGACCAACTACTTTGGCACCAAAAGTATGACTAAAGCTATGATTCCATTAATGAGGCCGTCTCCTTTTGGCGCTCGAATTGTTAATGTGACCTCACGACTGGGGAGACTTAACGGCAGAAGGAATGTAAGTGCCTTACTCTTCCTTTTCATTCTTATTCTTCTTCTCACTCTTATTGCCCTTGTTCATCTTGTCTGAAGAGTATTTCTTTTTTTCTTTTACTTCATAGTCAAGTTTTTTTCAGTACTGCACCCTTGTAATGCTTCATAGGAGATATTTGTTATTTGTCAAAAGCAACAACTTCTTGAGTTCTCTAATATGCAAATAGCTTTTATTTTCACATCTCAAAATGATCTACTTCTGTTTGATGCCCACCAGAGAATTGCAAATGTCAGCTTGA</genome_strand>
        <mrna_strand>CTTGCTCTAAAACTCTGAAACCAAAACAAAATCTGGAAATGAGTAGTGAAACAAGGTGAAGAAGAATAGCTCGAGCTTAAAACCCTACTAGTCGAAGAATTAATGGGTAAAAAGGAGAGGGCGCAAGAGAGAAGAGAGCAGAGACGCCAAGAGATCTCTCTTCTCCGTACTATTCCTTATTCTGATCAACAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGGTCAAATGAAACTATCGCTGTCGTGACTGGTTCAAACAGAGGAATTGGTTTTGAAATTGCTCACCAACTGGCCTCACATGGCTTAACAGTAGTTCTTACATCACGAGAGACTCGTGTTGGTGAAGAAGCAACGAAAATCATGCAAGAAAAAGGTTTGAATGTGGTATTTCATCAATTGGATATTGTAGACCCTGTATCAGTTGAAACATTTTCTGACTGGATAAAGGAAAACTATGGTGGCTTAGATATACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATAATGCAGGAGTCAATTTCAATTTCGGCACAGATAATTCAGTGGAATATGCAGAAACTGTTATTCAGACCAACTACTTTGGCACCAAAAGTATGACTAAAGCTATGATTCCATTAATGAGGCCGTCTCCTTTTGGCGCTCGAATTGTTAATGTGACCTCACGACTGGGGAGACTTAACGGCAGAAGGAAT............................................................................................................................................................................................................................................................AGAATTGCAAATGTCAGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374413" ref_strand="+" ref_description="SGN-E374413 [TUS-33-P14]">
      <seq>cttgctctaaaactctgaaaccaaaacaaaatctggaaatgagtagtgaaacaaggtgaagaagaatagctcgagcttaaaaccctactagtcgaagaattaatgggtaaaaaggagagggcgcaagagagaagagagcagagacgccaagagatctctcttctccgtactattccttattctgatcaacaaagatggtggtcaaatgaaactatcgctgtcgtgactggttcaaacagaggaattggttttgaaattgctcaccaactggcctcacatggcttaacagtagttcttacatcacgagagactcgtgttggtgaagaagcaacgaaaatcatgcaagaaaaaggtttgaatgtggtatttcatcaattggatattgtagaccctgtatcagttgaaacattttctgactggataaaggaaaactatggtggcttagatatactgatcaataatgcaggagtcaatttcaatttcggcacagataattcagtggaatatgcagaaactgttattcagaccaactactttggcaccaaaagtatgactaaagctatgattccattaatgaggccgtctccttttggcgctcgaattgttaatgtgacctcacgactggggagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14508" stop="11734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14208" g_stop="14015" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14014" i_stop="13042" i_length="973">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13041" g_stop="12783" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="453" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12782" i_stop="12212" i_length="571">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12211" g_stop="12034" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="631" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E374413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14208" e_stop="14015"/>
          <exon e_start="13041" e_stop="12783"/>
          <exon e_start="12211" e_stop="12034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTCTAAAACTCTGAAACCAAAACAAAATCTGGAAATGAGTAGTGAAACAAGGTGAAGAAGAATAGCTCGAGCTTAAAACCCTACTAGTCGAAGAATTAATGGGTAAAAAGGAGAGGGCGCAAGAGAGAAGAGAGCAGAGACGCCAAGAGATCTCTCTTCTCCGTACTATTCCTTATTCTGATCAACAAAGGTGAGAGTTCTTTGATCCATAAAAAAAAACTTTCTTGATATGTTTTGCATTTTGTTCTCAATTGAGTCGAAAATATCCGTGTCTGAATTGAGGGTTTCTGCATTTGATTCAGAGGAAAAATGACAAGTCAAAGGGTCTAACTGTTAAGTGTATAATTTTGCCCTGTAGCTTTAGCATTGGGTTTTAGTTAAATCAACAAGAGTGGAAACTGTGTGTAGATAATGGAACGGTCTCTAGTGTATTCAATTTTGACATACTTGAATATGATAGTTAAGATGACAAACTCAAAAAGCATGTAGTTAGTATGTAAGGAAATGTTTTTAGGTTGAAGATTGTTTATGTGTTCTTATGCTTATTGGACAAACAACTCTGCAGTTCAAAATTCAAATGTTGCAGTTTGGATTCTAATAGTGTGACCATATTGTTCTCTTAGAAGTATGTTTTTGCTACAACGAAATTAGAAAGATGTGAGGTGTTTTAAGAACCCCATTCAGAGAACAGAAACCTAAAACGGAAATGCTTGGTGCATAATTTCTGCATGTTTACTCTAGTATTGTTAGATGGGAAACAATGAATGGGAAACAATGACATCGTTGATTGTCTAATCAGCTTAATAGCAGATTTAGAGAAGAAATATGAGATTATTGATTTGGTGTACAGTTGGTTTACTTCCATTCTTCCAAGCTGCCTCTGTACTTCATCTATGGTCTATGCAACATATCATAAGAGTTCCTATGAATCATAACCTAAAATGACTGTATCATTGGAAAATTGTTGGTTCTTTGATTACTTGGCAATCAGTTTCGGTAATTAACTAAGATGACGCTCCAAAGTGTTTTGATAATCTTTTGGCTTATTGTTCCTATTAGTTATCGGAAGATCTGGATAATTACGCTCCAAAGTGTTTTGATTATGGTTTACTTTACGGTGTTGATTCTGAGCATTACACTTATAGACGGAAGATGATTTTCAGATGGTGGTCAAATGAAACTATCGCTGTCGTGACTGGTTCAAACAGAGGAATTGGTTTTGAAATTGCTCACCAACTGGCCTCACATGGCTTAACAGTAGTTCTTACATCACGAGAGACTCGTGTTGGTGAAGAAGCAACGAAAATCATGCAAGAAAAAGGTTTGAATGTGGTATTTCATCAATTGGATATTGTAGACCCTGTATCAGTTGAAACATTTTCTGACTGGATAAAGGAAAACTATGGTGGCTTAGATATACTGGTAATCCATCTACTCTATTTTCTCTATATAATCTAGCATTGGTCCATCTACTCCATGATATCTTTATGATGATGATACAATATGAGCTTAAATGATGAAATGGGGATTCATATAGCCGACCCCAACTTATTTGGGACTGAGACGTGTTGTTTGTAATCTAGCATTGATCCAGTCGCATATACATCCAGTTGCAGAGCCACCTTGTACAAAGGGATGTCAATAGACCCGCCTTTACTGCAAAATACATTGCTTAGATAGAAATTTTTTAATGCTTATACTATATGTTGAATCCCTTTAATTCCTCGTGTGGTTACTTCTTTATATGTTGACTCCAGTTAGTGAAATCCTTGCTTCATTACTGTGTAAAACCGTACTGGTTACAAAAGCTTACTACCAGGTGCTAATTTTTCTTGTACTTCACAGTTTATGTTCTTAGTTATTATTTTTTCATTTTCCTTTTATTTTGTTTGGGGTGGGGGGGTGTTATTTTACTTTCATGCGGTTATCAATTTTGTCTGTTAACTGTTTTGGCAAATCTGGCCCTTTCAGCTAATGATATGGAAGTATTTAGATCAATAATGCAGGAGTCAATTTCAATTTCGGCACAGATAATTCAGTGGAATATGCAGAAACTGTTATTCAGACCAACTACTTTGGCACCAAAAGTATGACTAAAGCTATGATTCCATTAATGAGGCCGTCTCCTTTTGGCGCTCGAATTGTTAATGTGACCTCACGACTGGGGAGAC</genome_strand>
        <mrna_strand>CTTGCTCTAAAACTCTGAAACCAAAACAAAATCTGGAAATGAGTAGTGAAACAAGGTGAAGAAGAATAGCTCGAGCTTAAAACCCTACTAGTCGAAGAATTAATGGGTAAAAAGGAGAGGGCGCAAGAGAGAAGAGAGCAGAGACGCCAAGAGATCTCTCTTCTCCGTACTATTCCTTATTCTGATCAACAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGGTCAAATGAAACTATCGCTGTCGTGACTGGTTCAAACAGAGGAATTGGTTTTGAAATTGCTCACCAACTGGCCTCACATGGCTTAACAGTAGTTCTTACATCACGAGAGACTCGTGTTGGTGAAGAAGCAACGAAAATCATGCAAGAAAAAGGTTTGAATGTGGTATTTCATCAATTGGATATTGTAGACCCTGTATCAGTTGAAACATTTTCTGACTGGATAAAGGAAAACTATGGTGGCTTAGATATACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATAATGCAGGAGTCAATTTCAATTTCGGCACAGATAATTCAGTGGAATATGCAGAAACTGTTATTCAGACCAACTACTTTGGCACCAAAAGTATGACTAAAGCTATGATTCCATTAATGAGGCCGTCTCCTTTTGGCGCTCGAATTGTTAATGTGACCTCACGACTGGGGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610996" ref_strand="+" ref_description="SGN-E610996 [60741]">
      <seq>gctattactattcaccatatgaatacgagggtttgctctaaaactctgaaaccaaaacaaaatctggaaatgagtagtgggtgaaccaaagtgcagaatagcttgagctttgaaccctaataatcgaagaaataatgggtaaaaaggagagggcgcaagagagaagagagcagagacgccaagagatctctcttctccgtactattccttattctgatcaacaaagatggtggtcaaatgaaactatggctgtcgtgactggttcaaaacagaggaattggttttgaaattgctcaccaactggcatcacatggcttaacagtagttcttacatcacgagagactcgtgttggtgaagaagcaacaaaaatcatgcaagaaaaaggtttgaatgtggtatttcatcaattggatattgtggaccctgcatcaattgaaacattttctgactggataaaggaaaactatggtggtttagatatactgatcaataatgcaggagtcaatttcaatttcggcacagataattcagtggaatatgcagaaactgttatccggaccaactacttcggcaccaaaagtatgattaaaactatgattccattaatgaggccttctccttttggcgctcgtattgttaatgtgacctcacgactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14528" stop="11740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14243" g_stop="14015" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.865"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14014" i_stop="13042" i_length="973">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13041" g_stop="12783" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="486" r_length="260" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12782" i_stop="12212" i_length="571">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12211" g_stop="12040" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="658" r_length="172" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E610996" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E610996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14243" e_stop="14015"/>
          <exon e_start="13041" e_stop="12783"/>
          <exon e_start="12211" e_stop="12040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTTAACTTGTTCATATGAATACGAGGGTTTGCTTGCTCTAAAACTCTGAAACCAAAACAAAATCTGGAAATGAGTAGTGAAACAAGGTGA-AGAAGAATAGCTCGAGCTTAAAACCCTACTAGTCGAAGAATTAATGGGTAAAAAGGAGAGGGCGCAAGAGAGAAGAGAGCAGAGACGCCAAGAGATCTCTCTTCTCCGTACTATTCCTTATTCTGATCAACAAAGGTGAGAGTTCTTTGATCCATAAAAAAAAACTTTCTTGATATGTTTTGCATTTTGTTCTCAATTGAGTCGAAAATATCCGTGTCTGAATTGAGGGTTTCTGCATTTGATTCAGAGGAAAAATGACAAGTCAAAGGGTCTAACTGTTAAGTGTATAATTTTGCCCTGTAGCTTTAGCATTGGGTTTTAGTTAAATCAACAAGAGTGGAAACTGTGTGTAGATAATGGAACGGTCTCTAGTGTATTCAATTTTGACATACTTGAATATGATAGTTAAGATGACAAACTCAAAAAGCATGTAGTTAGTATGTAAGGAAATGTTTTTAGGTTGAAGATTGTTTATGTGTTCTTATGCTTATTGGACAAACAACTCTGCAGTTCAAAATTCAAATGTTGCAGTTTGGATTCTAATAGTGTGACCATATTGTTCTCTTAGAAGTATGTTTTTGCTACAACGAAATTAGAAAGATGTGAGGTGTTTTAAGAACCCCATTCAGAGAACAGAAACCTAAAACGGAAATGCTTGGTGCATAATTTCTGCATGTTTACTCTAGTATTGTTAGATGGGAAACAATGAATGGGAAACAATGACATCGTTGATTGTCTAATCAGCTTAATAGCAGATTTAGAGAAGAAATATGAGATTATTGATTTGGTGTACAGTTGGTTTACTTCCATTCTTCCAAGCTGCCTCTGTACTTCATCTATGGTCTATGCAACATATCATAAGAGTTCCTATGAATCATAACCTAAAATGACTGTATCATTGGAAAATTGTTGGTTCTTTGATTACTTGGCAATCAGTTTCGGTAATTAACTAAGATGACGCTCCAAAGTGTTTTGATAATCTTTTGGCTTATTGTTCCTATTAGTTATCGGAAGATCTGGATAATTACGCTCCAAAGTGTTTTGATTATGGTTTACTTTACGGTGTTGATTCTGAGCATTACACTTATAGACGGAAGATGATTTTCAGATGGTGGTCAAATGAAACTATCGCTGTCGTGACTGGTTC-AAACAGAGGAATTGGTTTTGAAATTGCTCACCAACTGGCCTCACATGGCTTAACAGTAGTTCTTACATCACGAGAGACTCGTGTTGGTGAAGAAGCAACGAAAATCATGCAAGAAAAAGGTTTGAATGTGGTATTTCATCAATTGGATATTGTAGACCCTGTATCAGTTGAAACATTTTCTGACTGGATAAAGGAAAACTATGGTGGCTTAGATATACTGGTAATCCATCTACTCTATTTTCTCTATATAATCTAGCATTGGTCCATCTACTCCATGATATCTTTATGATGATGATACAATATGAGCTTAAATGATGAAATGGGGATTCATATAGCCGACCCCAACTTATTTGGGACTGAGACGTGTTGTTTGTAATCTAGCATTGATCCAGTCGCATATACATCCAGTTGCAGAGCCACCTTGTACAAAGGGATGTCAATAGACCCGCCTTTACTGCAAAATACATTGCTTAGATAGAAATTTTTTAATGCTTATACTATATGTTGAATCCCTTTAATTCCTCGTGTGGTTACTTCTTTATATGTTGACTCCAGTTAGTGAAATCCTTGCTTCATTACTGTGTAAAACCGTACTGGTTACAAAAGCTTACTACCAGGTGCTAATTTTTCTTGTACTTCACAGTTTATGTTCTTAGTTATTATTTTTTCATTTTCCTTTTATTTTGTTTGGGGTGGGGGGGTGTTATTTTACTTTCATGCGGTTATCAATTTTGTCTGTTAACTGTTTTGGCAAATCTGGCCCTTTCAGCTAATGATATGGAAGTATTTAGATCAATAATGCAGGAGTCAATTTCAATTTCGGCACAGATAATTCAGTGGAATATGCAGAAACTGTTATTCAGACCAACTACTTTGGCACCAAAAGTATGACTAAAGCTATGATTCCATTAATGAGGCCGTCTCCTTTTGGCGCTCGAATTGTTAATGTGACCTCACGACTGG</genome_strand>
        <mrna_strand>GCTATTACTATTCACCATATGAATACGAGGGTTTGC-T-CT--AAAACTCTGAAACCAAAACAAAATCTGGAAATGAGTAGTGGGTGAACCAAAGTGCAGAATAGCTTGAGCTTTGAACCCTAATAATCGAAGAAATAATGGGTAAAAAGGAGAGGGCGCAAGAGAGAAGAGAGCAGAGACGCCAAGAGATCTCTCTTCTCCGTACTATTCCTTATTCTGATCAACAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGGTCAAATGAAACTATGGCTGTCGTGACTGGTTCAAAACAGAGGAATTGGTTTTGAAATTGCTCACCAACTGGCATCACATGGCTTAACAGTAGTTCTTACATCACGAGAGACTCGTGTTGGTGAAGAAGCAACAAAAATCATGCAAGAAAAAGGTTTGAATGTGGTATTTCATCAATTGGATATTGTGGACCCTGCATCAATTGAAACATTTTCTGACTGGATAAAGGAAAACTATGGTGGTTTAGATATACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATAATGCAGGAGTCAATTTCAATTTCGGCACAGATAATTCAGTGGAATATGCAGAAACTGTTATCCGGACCAACTACTTCGGCACCAAAAGTATGATTAAAACTATGATTCCATTAATGAGGCCTTCTCCTTTTGGCGCTCGTATTGTTAATGTGACCTCACGACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487992" ref_strand="+" ref_description="SGN-E487992 [cSTE-27-M7]">
      <seq>gtgcagaatagcttgagctttgaaccctaataatcgaagaaataatgggtaaaaaggagagggcgcaagagagaagagagcagagacgccaagagatctctcttctccgtactattccttattctgatcaacaaagatggtggtcaaatgaaactatggctgtcgtgactggttcaaacagaggaattggttttgaaattgctcaccaactggcatcacatggcttaacagtagttcttacatcacgagagactcgtgttggtgaagaagcaacaaaaatcatgcaagaaaaaggtttgaatgtggtatttcatcaattggatattgtggaccctgcatcaattgaaacattttctgactggataaaggaaaactatggtggtttagatatactgatcaataatgcaggagtcaatttcaatttcggcacagataattcagtggaatatgcagaaactgttatccggaccaactacttcggcaccaaaagtatgattaaaactatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14448" stop="11799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14150" g_stop="14015" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14014" i_stop="13042" i_length="973">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13041" g_stop="12783" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="395" r_length="259" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12782" i_stop="12212" i_length="571">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12211" g_stop="12099" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="508" r_length="113" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E487992" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14150" e_stop="14015"/>
          <exon e_start="13041" e_stop="12783"/>
          <exon e_start="12211" e_stop="12099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAATAGCTCGAGCTTAAAACCCTACTAGTCGAAGAATTAATGGGTAAAAAGGAGAGGGCGCAAGAGAGAAGAGAGCAGAGACGCCAAGAGATCTCTCTTCTCCGTACTATTCCTTATTCTGATCAACAAAGGTGAGAGTTCTTTGATCCATAAAAAAAAACTTTCTTGATATGTTTTGCATTTTGTTCTCAATTGAGTCGAAAATATCCGTGTCTGAATTGAGGGTTTCTGCATTTGATTCAGAGGAAAAATGACAAGTCAAAGGGTCTAACTGTTAAGTGTATAATTTTGCCCTGTAGCTTTAGCATTGGGTTTTAGTTAAATCAACAAGAGTGGAAACTGTGTGTAGATAATGGAACGGTCTCTAGTGTATTCAATTTTGACATACTTGAATATGATAGTTAAGATGACAAACTCAAAAAGCATGTAGTTAGTATGTAAGGAAATGTTTTTAGGTTGAAGATTGTTTATGTGTTCTTATGCTTATTGGACAAACAACTCTGCAGTTCAAAATTCAAATGTTGCAGTTTGGATTCTAATAGTGTGACCATATTGTTCTCTTAGAAGTATGTTTTTGCTACAACGAAATTAGAAAGATGTGAGGTGTTTTAAGAACCCCATTCAGAGAACAGAAACCTAAAACGGAAATGCTTGGTGCATAATTTCTGCATGTTTACTCTAGTATTGTTAGATGGGAAACAATGAATGGGAAACAATGACATCGTTGATTGTCTAATCAGCTTAATAGCAGATTTAGAGAAGAAATATGAGATTATTGATTTGGTGTACAGTTGGTTTACTTCCATTCTTCCAAGCTGCCTCTGTACTTCATCTATGGTCTATGCAACATATCATAAGAGTTCCTATGAATCATAACCTAAAATGACTGTATCATTGGAAAATTGTTGGTTCTTTGATTACTTGGCAATCAGTTTCGGTAATTAACTAAGATGACGCTCCAAAGTGTTTTGATAATCTTTTGGCTTATTGTTCCTATTAGTTATCGGAAGATCTGGATAATTACGCTCCAAAGTGTTTTGATTATGGTTTACTTTACGGTGTTGATTCTGAGCATTACACTTATAGACGGAAGATGATTTTCAGATGGTGGTCAAATGAAACTATCGCTGTCGTGACTGGTTCAAACAGAGGAATTGGTTTTGAAATTGCTCACCAACTGGCCTCACATGGCTTAACAGTAGTTCTTACATCACGAGAGACTCGTGTTGGTGAAGAAGCAACGAAAATCATGCAAGAAAAAGGTTTGAATGTGGTATTTCATCAATTGGATATTGTAGACCCTGTATCAGTTGAAACATTTTCTGACTGGATAAAGGAAAACTATGGTGGCTTAGATATACTGGTAATCCATCTACTCTATTTTCTCTATATAATCTAGCATTGGTCCATCTACTCCATGATATCTTTATGATGATGATACAATATGAGCTTAAATGATGAAATGGGGATTCATATAGCCGACCCCAACTTATTTGGGACTGAGACGTGTTGTTTGTAATCTAGCATTGATCCAGTCGCATATACATCCAGTTGCAGAGCCACCTTGTACAAAGGGATGTCAATAGACCCGCCTTTACTGCAAAATACATTGCTTAGATAGAAATTTTTTAATGCTTATACTATATGTTGAATCCCTTTAATTCCTCGTGTGGTTACTTCTTTATATGTTGACTCCAGTTAGTGAAATCCTTGCTTCATTACTGTGTAAAACCGTACTGGTTACAAAAGCTTACTACCAGGTGCTAATTTTTCTTGTACTTCACAGTTTATGTTCTTAGTTATTATTTTTTCATTTTCCTTTTATTTTGTTTGGGGTGGGGGGGTGTTATTTTACTTTCATGCGGTTATCAATTTTGTCTGTTAACTGTTTTGGCAAATCTGGCCCTTTCAGCTAATGATATGGAAGTATTTAGATCAATAATGCAGGAGTCAATTTCAATTTCGGCACAGATAATTCAGTGGAATATGCAGAAACTGTTATTCAGACCAACTACTTTGGCACCAAAAGTATGACTAAAGCTATGAT</genome_strand>
        <mrna_strand>GTGCAGAATAGCTTGAGCTTTGAACCCTAATAATCGAAGAAATAATGGGTAAAAAGGAGAGGGCGCAAGAGAGAAGAGAGCAGAGACGCCAAGAGATCTCTCTTCTCCGTACTATTCCTTATTCTGATCAACAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGGTCAAATGAAACTATGGCTGTCGTGACTGGTTCAAACAGAGGAATTGGTTTTGAAATTGCTCACCAACTGGCATCACATGGCTTAACAGTAGTTCTTACATCACGAGAGACTCGTGTTGGTGAAGAAGCAACAAAAATCATGCAAGAAAAAGGTTTGAATGTGGTATTTCATCAATTGGATATTGTGGACCCTGCATCAATTGAAACATTTTCTGACTGGATAAAGGAAAACTATGGTGGTTTAGATATACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATAATGCAGGAGTCAATTTCAATTTCGGCACAGATAATTCAGTGGAATATGCAGAAACTGTTATCCGGACCAACTACTTCGGCACCAAAAGTATGATTAAAACTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427714" ref_strand="+" ref_description="SGN-E427714 [STM-49-A3]">
      <seq>gtgcagaatagcttgagctttgaaccctaataatcgaagaaataatgggtaaaaaggagagggcgcaagagagaagagagcagagacgccaagagatctctcttctccgtactattccttattctgatcaacaaagatggtggtcaaatgaaactatggctgtcgtgactggttcaaacagaggaattggttttgaaattgctcaccaactggcatcacatggcttaacagtagttcttacatcacgagagactcgtgttggtgaagaagcaacaaaaatcatgcaagaaaaagggttgaatgtggtatttcatcaattggatattgtggaccctgcatcaattgaaacattttctgactggataaagggaaactatggtggtttagatatactgatcaataatgcaggagtcaatttcaatttcggcacagataattcagtggaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14448" stop="11857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14150" g_stop="14015" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14014" i_stop="13042" i_length="973">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13041" g_stop="12783" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="395" r_length="259" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12782" i_stop="12212" i_length="571">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12211" g_stop="12157" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="450" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E427714" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14150" e_stop="14015"/>
          <exon e_start="13041" e_stop="12783"/>
          <exon e_start="12211" e_stop="12157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAATAGCTCGAGCTTAAAACCCTACTAGTCGAAGAATTAATGGGTAAAAAGGAGAGGGCGCAAGAGAGAAGAGAGCAGAGACGCCAAGAGATCTCTCTTCTCCGTACTATTCCTTATTCTGATCAACAAAGGTGAGAGTTCTTTGATCCATAAAAAAAAACTTTCTTGATATGTTTTGCATTTTGTTCTCAATTGAGTCGAAAATATCCGTGTCTGAATTGAGGGTTTCTGCATTTGATTCAGAGGAAAAATGACAAGTCAAAGGGTCTAACTGTTAAGTGTATAATTTTGCCCTGTAGCTTTAGCATTGGGTTTTAGTTAAATCAACAAGAGTGGAAACTGTGTGTAGATAATGGAACGGTCTCTAGTGTATTCAATTTTGACATACTTGAATATGATAGTTAAGATGACAAACTCAAAAAGCATGTAGTTAGTATGTAAGGAAATGTTTTTAGGTTGAAGATTGTTTATGTGTTCTTATGCTTATTGGACAAACAACTCTGCAGTTCAAAATTCAAATGTTGCAGTTTGGATTCTAATAGTGTGACCATATTGTTCTCTTAGAAGTATGTTTTTGCTACAACGAAATTAGAAAGATGTGAGGTGTTTTAAGAACCCCATTCAGAGAACAGAAACCTAAAACGGAAATGCTTGGTGCATAATTTCTGCATGTTTACTCTAGTATTGTTAGATGGGAAACAATGAATGGGAAACAATGACATCGTTGATTGTCTAATCAGCTTAATAGCAGATTTAGAGAAGAAATATGAGATTATTGATTTGGTGTACAGTTGGTTTACTTCCATTCTTCCAAGCTGCCTCTGTACTTCATCTATGGTCTATGCAACATATCATAAGAGTTCCTATGAATCATAACCTAAAATGACTGTATCATTGGAAAATTGTTGGTTCTTTGATTACTTGGCAATCAGTTTCGGTAATTAACTAAGATGACGCTCCAAAGTGTTTTGATAATCTTTTGGCTTATTGTTCCTATTAGTTATCGGAAGATCTGGATAATTACGCTCCAAAGTGTTTTGATTATGGTTTACTTTACGGTGTTGATTCTGAGCATTACACTTATAGACGGAAGATGATTTTCAGATGGTGGTCAAATGAAACTATCGCTGTCGTGACTGGTTCAAACAGAGGAATTGGTTTTGAAATTGCTCACCAACTGGCCTCACATGGCTTAACAGTAGTTCTTACATCACGAGAGACTCGTGTTGGTGAAGAAGCAACGAAAATCATGCAAGAAAAAGGTTTGAATGTGGTATTTCATCAATTGGATATTGTAGACCCTGTATCAGTTGAAACATTTTCTGACTGGATAAAGGAAAACTATGGTGGCTTAGATATACTGGTAATCCATCTACTCTATTTTCTCTATATAATCTAGCATTGGTCCATCTACTCCATGATATCTTTATGATGATGATACAATATGAGCTTAAATGATGAAATGGGGATTCATATAGCCGACCCCAACTTATTTGGGACTGAGACGTGTTGTTTGTAATCTAGCATTGATCCAGTCGCATATACATCCAGTTGCAGAGCCACCTTGTACAAAGGGATGTCAATAGACCCGCCTTTACTGCAAAATACATTGCTTAGATAGAAATTTTTTAATGCTTATACTATATGTTGAATCCCTTTAATTCCTCGTGTGGTTACTTCTTTATATGTTGACTCCAGTTAGTGAAATCCTTGCTTCATTACTGTGTAAAACCGTACTGGTTACAAAAGCTTACTACCAGGTGCTAATTTTTCTTGTACTTCACAGTTTATGTTCTTAGTTATTATTTTTTCATTTTCCTTTTATTTTGTTTGGGGTGGGGGGGTGTTATTTTACTTTCATGCGGTTATCAATTTTGTCTGTTAACTGTTTTGGCAAATCTGGCCCTTTCAGCTAATGATATGGAAGTATTTAGATCAATAATGCAGGAGTCAATTTCAATTTCGGCACAGATAATTCAGTGGAATATG</genome_strand>
        <mrna_strand>GTGCAGAATAGCTTGAGCTTTGAACCCTAATAATCGAAGAAATAATGGGTAAAAAGGAGAGGGCGCAAGAGAGAAGAGAGCAGAGACGCCAAGAGATCTCTCTTCTCCGTACTATTCCTTATTCTGATCAACAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGGTCAAATGAAACTATGGCTGTCGTGACTGGTTCAAACAGAGGAATTGGTTTTGAAATTGCTCACCAACTGGCATCACATGGCTTAACAGTAGTTCTTACATCACGAGAGACTCGTGTTGGTGAAGAAGCAACAAAAATCATGCAAGAAAAAGGGTTGAATGTGGTATTTCATCAATTGGATATTGTGGACCCTGCATCAATTGAAACATTTTCTGACTGGATAAAGGGAAACTATGGTGGTTTAGATATACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATAATGCAGGAGTCAATTTCAATTTCGGCACAGATAATTCAGTGGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248050" ref_strand="+" ref_description="SGN-E248050 [cLEF-47-D1]">
      <seq>atagctcgagcttaaaaccctactagtcgaagaattaatgggtaaaaaggagagggcgcaagagagaagagagcagagacgccaagagatctctcttctccgtactattccttattctgatcaacaaagatggtggtcaaatgaaactatcgctgtcgtgactggttcaaacagaggaattggttttgaaattgctcaccaactggcctcacatggcttaacagtagttcttacatcacgagagactcgtgttggtgaagaagcaacgaaaatcatgcaagaaaaaggtttgaatgtggtatttcatcaattggatattgtagaccctgtatcagttgaaacattttctgactggataaaggaaaactatggtggcttagatatactggtaatccatctactctattttctctatataatctagcattggtccatctactccatgatatctttatgatgatgatacaatatgagcttaaatgatgaaatggggattcatatagccgaccccaacttatttgggactgagacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14443" stop="12337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14143" g_stop="14015" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14014" i_stop="13042" i_length="973">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13041" g_stop="12637" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="534" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E248050" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14143" e_stop="14015"/>
          <exon e_start="13041" e_stop="12637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTCGAGCTTAAAACCCTACTAGTCGAAGAATTAATGGGTAAAAAGGAGAGGGCGCAAGAGAGAAGAGAGCAGAGACGCCAAGAGATCTCTCTTCTCCGTACTATTCCTTATTCTGATCAACAAAGGTGAGAGTTCTTTGATCCATAAAAAAAAACTTTCTTGATATGTTTTGCATTTTGTTCTCAATTGAGTCGAAAATATCCGTGTCTGAATTGAGGGTTTCTGCATTTGATTCAGAGGAAAAATGACAAGTCAAAGGGTCTAACTGTTAAGTGTATAATTTTGCCCTGTAGCTTTAGCATTGGGTTTTAGTTAAATCAACAAGAGTGGAAACTGTGTGTAGATAATGGAACGGTCTCTAGTGTATTCAATTTTGACATACTTGAATATGATAGTTAAGATGACAAACTCAAAAAGCATGTAGTTAGTATGTAAGGAAATGTTTTTAGGTTGAAGATTGTTTATGTGTTCTTATGCTTATTGGACAAACAACTCTGCAGTTCAAAATTCAAATGTTGCAGTTTGGATTCTAATAGTGTGACCATATTGTTCTCTTAGAAGTATGTTTTTGCTACAACGAAATTAGAAAGATGTGAGGTGTTTTAAGAACCCCATTCAGAGAACAGAAACCTAAAACGGAAATGCTTGGTGCATAATTTCTGCATGTTTACTCTAGTATTGTTAGATGGGAAACAATGAATGGGAAACAATGACATCGTTGATTGTCTAATCAGCTTAATAGCAGATTTAGAGAAGAAATATGAGATTATTGATTTGGTGTACAGTTGGTTTACTTCCATTCTTCCAAGCTGCCTCTGTACTTCATCTATGGTCTATGCAACATATCATAAGAGTTCCTATGAATCATAACCTAAAATGACTGTATCATTGGAAAATTGTTGGTTCTTTGATTACTTGGCAATCAGTTTCGGTAATTAACTAAGATGACGCTCCAAAGTGTTTTGATAATCTTTTGGCTTATTGTTCCTATTAGTTATCGGAAGATCTGGATAATTACGCTCCAAAGTGTTTTGATTATGGTTTACTTTACGGTGTTGATTCTGAGCATTACACTTATAGACGGAAGATGATTTTCAGATGGTGGTCAAATGAAACTATCGCTGTCGTGACTGGTTCAAACAGAGGAATTGGTTTTGAAATTGCTCACCAACTGGCCTCACATGGCTTAACAGTAGTTCTTACATCACGAGAGACTCGTGTTGGTGAAGAAGCAACGAAAATCATGCAAGAAAAAGGTTTGAATGTGGTATTTCATCAATTGGATATTGTAGACCCTGTATCAGTTGAAACATTTTCTGACTGGATAAAGGAAAACTATGGTGGCTTAGATATACTGGTAATCCATCTACTCTATTTTCTCTATATAATCTAGCATTGGTCCATCTACTCCATGATATCTTTATGATGATGATACAATATGAGCTTAAATGATGAAATGGGGATTCATATAGCCGACCCCAACTTATTTGGGACTGAGACGTG</genome_strand>
        <mrna_strand>ATAGCTCGAGCTTAAAACCCTACTAGTCGAAGAATTAATGGGTAAAAAGGAGAGGGCGCAAGAGAGAAGAGAGCAGAGACGCCAAGAGATCTCTCTTCTCCGTACTATTCCTTATTCTGATCAACAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGGTCAAATGAAACTATCGCTGTCGTGACTGGTTCAAACAGAGGAATTGGTTTTGAAATTGCTCACCAACTGGCCTCACATGGCTTAACAGTAGTTCTTACATCACGAGAGACTCGTGTTGGTGAAGAAGCAACGAAAATCATGCAAGAAAAAGGTTTGAATGTGGTATTTCATCAATTGGATATTGTAGACCCTGTATCAGTTGAAACATTTTCTGACTGGATAAAGGAAAACTATGGTGGCTTAGATATACTGGTAATCCATCTACTCTATTTTCTCTATATAATCTAGCATTGGTCCATCTACTCCATGATATCTTTATGATGATGATACAATATGAGCTTAAATGATGAAATGGGGATTCATATAGCCGACCCCAACTTATTTGGGACTGAGACGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427233" ref_strand="+" ref_description="SGN-E427233 [STM-48-C15]">
      <seq>agagagagaacaaatctaatttcttatttttcctccactgtaaggtaccttctgttcaaagtagcgttagatctgtgaagaaaagatccattaaaaaaaaattcaatcgttttgcctatgctgtgaagaaattggaaaaatcaattttctggcatgtcagtggctggagaggcagtagagcatgtgaattttccagcaatggcaacaaaggaccggtccggatgttgtaacccggtgaagaaggccggcccggtttcgttggaccatgtgctatcagctttaggggagaccaaggaagagagggagtcgagaatcagaagcctctttagttttttcgattctgacaatgcggggtacttggattatgcgaaaattgaaaagggtttgtctgctatgcaaattccagcggagtataagtttgctaaggaattgttgaatggttgtgatgctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19017" stop="20066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19314" g_stop="19766" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E427233" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19314" e_stop="19766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATAATATCAAATCTAATTTCTTCTTTTTCCTCCACTGTAAGGTACCTTCTGTTCAAAGTAGCGTTAGATCTGTGAAGAAAAGATCTATAAATAAAAAATTCAATCGTTTTGCCTATGCTGTGAAGAAATCGGAAGAATCAATTTTCTGGCATGTCAGTGGCTGGAGAGGCCGTAGAGCATGTGAATTTTCCAGCAATGGCAACAAAGGACCGGTCCGGATGTTGTAACCCGGTGAAGAAGGCCGGCCCGGTTTCGTTGGACCATGTGCTATCAGCTTTAGGTGAGACCAAGGAAGAGAGGGAGTCGAGAATCAGAAGCCTGTTTAGTTTCTTCGATTCTGACAATGCGGGGTACTTGGATTATGCGAAAATTGAGAAGGGTTTGTCTGCTATGCAAATTCCAGCGGAGTATAAGTTTGCTAAAGAATTATTGAATGGTTGTGATGCCAAT</genome_strand>
        <mrna_strand>AGAGAGAGAACAAATCTAATTTCTTATTTTTCCTCCACTGTAAGGTACCTTCTGTTCAAAGTAGCGTTAGATCTGTGAAGAAAAGATCCATTAAAAAAAAATTCAATCGTTTTGCCTATGCTGTGAAGAAATTGGAAAAATCAATTTTCTGGCATGTCAGTGGCTGGAGAGGCAGTAGAGCATGTGAATTTTCCAGCAATGGCAACAAAGGACCGGTCCGGATGTTGTAACCCGGTGAAGAAGGCCGGCCCGGTTTCGTTGGACCATGTGCTATCAGCTTTAGGGGAGACCAAGGAAGAGAGGGAGTCGAGAATCAGAAGCCTCTTTAGTTTTTTCGATTCTGACAATGCGGGGTACTTGGATTATGCGAAAATTGAAAAGGGTTTGTCTGCTATGCAAATTCCAGCGGAGTATAAGTTTGCTAAGGAATTGTTGAATGGTTGTGATGCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485628" ref_strand="+" ref_description="SGN-E485628 [cSTE-18-J6]">
      <seq>agagagagaacaaatctaatttcttatttttcctccactgtaaggtaccttctgttcaaagtagcgttagatctgtgaagaaaagaccattaaaaaaaaattcaatcgttttgcctatgctgtgaagaaattggaaaaatcaattttctggcatgtcagtggctggagaggcagtagagcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19017" stop="19798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19314" g_stop="19498" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E485628" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>185</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19314" e_stop="19498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATAATATCAAATCTAATTTCTTCTTTTTCCTCCACTGTAAGGTACCTTCTGTTCAAAGTAGCGTTAGATCTGTGAAGAAAAGATCTATAAATAAAAAATTCAATCGTTTTGCCTATGCTGTGAAGAAATCGGAAGAATCAATTTTCTGGCATGTCAGTGGCTGGAGAGGCCGTAGAGCATGT</genome_strand>
        <mrna_strand>AGAGAGAGAACAAATCTAATTTCTTATTTTTCCTCCACTGTAAGGTACCTTCTGTTCAAAGTAGCGTTAGATCTGTGAAGAAAAGACCATTAAA-AAAAAATTCAATCGTTTTGCCTATGCTGTGAAGAAATTGGAAAAATCAATTTTCTGGCATGTCAGTGGCTGGAGAGGCAGTAGAGCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699514" ref_strand="+" ref_description="SGN-E699514 [FA10BE03]">
      <seq>ccagcatacagtcataccggaaggcatcagtaagcatgttcatgcatccaaatacctgattgcagggggagttgcaggagctgcttcgcgtactgccacagcacctcttgatcgcgttaaggtcattttacaagtgcaaacaactcatgcttcaattggtcctgcagtcaaaagcatatggaaggaaggtggtctattggggtttttccgtggcaatgggctaaatgtgttgaaggttgcaccagaaagtgcaattaaattttacgcatatgaaaccttgaaaaatgctattggtcgtgccaggggtgttgaagatcagagagacataggaacttctgggcgtcttgtggctggtggaatggcaggtgcaatagcacaaactgctatatatcccatggatcttgttaaaactcggttacagactcattcatgtgagagtggaagcgttcctagtctgcgaaaactatcaaaagatatttttatacaagagggacctcgggcattttatagaggatcggtaccatctctgcttggaatcatcccttatgcaggcattgatttagctgcatatgaaactttaaaggatttgccaaaggtttacattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24466" stop="25669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24764" g_stop="25369" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E699514" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24764" e_stop="25369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCAGACAGTCATACCGGAAGGCATCAGTAAGCATGTTCATGCATCCAAATACCTGATTGCAGGGGGAGTTGCAGGAGCTGCTTCGCGTACTGCCACAGCACCTCTTGATCGCGTTAAGGTCATTTTACAAGTGCAAACAACTCATGCTTCAATTGGTCCTGCAGTCAAAAGCATATGGAAGGAAGGTGGTCTATTGGGGTTTTTCCGTGGCAATGGGCTAAATGTGTTGAAGGTTGCACCAGAAAGTGCAATTAAATTTTACGCATATGAAACCTTGAAAAATGCTATTGGTCGTGCCAGGGGTGTTGAAGATCAGAGAGACATAGGAACTTCTGGGCGTCTTGTGGCTGGTGGAATGGCAGGTGCAATAGCACAAACTGCTATATATCCCATGGATCTTGTTAAAACTCGGTTACAGACTCATTCATGTGAGAGTGGAAGCGTTCCTAGTCTGCGAAAACTATCAAAAGATATTTTTATACAAGAGGGACCTCGGGCATTTTATAGAGGATTGGTACCATCTCTGCTTGGAATCATCCCTTATGCAGGCATTGATTTAGCTGCATATGAAACTTTAAAGGATTTGTCAAAGGTTTACATTCT</genome_strand>
        <mrna_strand>CCAGCATACAGTCATACCGGAAGGCATCAGTAAGCATGTTCATGCATCCAAATACCTGATTGCAGGGGGAGTTGCAGGAGCTGCTTCGCGTACTGCCACAGCACCTCTTGATCGCGTTAAGGTCATTTTACAAGTGCAAACAACTCATGCTTCAATTGGTCCTGCAGTCAAAAGCATATGGAAGGAAGGTGGTCTATTGGGGTTTTTCCGTGGCAATGGGCTAAATGTGTTGAAGGTTGCACCAGAAAGTGCAATTAAATTTTACGCATATGAAACCTTGAAAAATGCTATTGGTCGTGCCAGGGGTGTTGAAGATCAGAGAGACATAGGAACTTCTGGGCGTCTTGTGGCTGGTGGAATGGCAGGTGCAATAGCACAAACTGCTATATATCCCATGGATCTTGTTAAAACTCGGTTACAGACTCATTCATGTGAGAGTGGAAGCGTTCCTAGTCTGCGAAAACTATCAAAAGATATTTTTATACAAGAGGGACCTCGGGCATTTTATAGAGGATCGGTACCATCTCTGCTTGGAATCATCCCTTATGCAGGCATTGATTTAGCTGCATATGAAACTTTAAAGGATTTGCCAAAGGTTTACATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213707" ref_strand="+" ref_description="SGN-E213707 [cLEC-76-P7]">
      <seq>aacttctgggcgtcttgtggctggtggaatggcaggtgcaatagcacaaactgctatatatcccatggatcttgttaaaactcggttacagactcattcatgtgagagtggaagcgttcctagtctgcgaaaactatcaaaagatatttttatacaagagggacctcgggcattttatagaggattggtaccatctctgcttggaatcatcccttatgcaggcattgatttagctgcatatgaaactttaaaggatttgtcaaaggtttacattcttcatgatagtgaagccggccctcttgtgcaactgggatgtgggactatttcaggagccctgggagcaacatgtgtttatcctttgcaggttattcggaccagaatgcaagctgattctgcataccaaggtatggctgatgtgttccgaaaaacagttcagcgtgaaggcttcaggggattctacaaaggactttttccaaatcttttaaaagttgtgccagcagcaagcataacctatcttgtgtacgaatcaatgaaaaagagtctagatcttgattagctgacatagagtcagcagcagatttcaggttcaaactgctgatgaagatgatgatgataatgtgacattaaataagataaatttagctcattggtgatatgattatcaaaatcatacacctgatttttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24794" stop="26293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25094" g_stop="25380" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25381" i_stop="25473" i_length="93">
            <donor d_prob="0.165" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25474" g_stop="25564" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="378" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25565" i_stop="25683" i_length="119">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25684" g_stop="25993" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="688" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E213707" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25094" e_stop="25380"/>
          <exon e_start="25474" e_stop="25564"/>
          <exon e_start="25684" e_stop="25993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCTGGGCGTCTTGTGGCTGGTGGAATGGCAGGTGCAATAGCACAAACTGCTATATATCCCATGGATCTTGTTAAAACTCGGTTACAGACTCATTCATGTGAGAGTGGAAGCGTTCCTAGTCTGCGAAAACTATCAAAAGATATTTTTATACAAGAGGGACCTCGGGCATTTTATAGAGGATTGGTACCATCTCTGCTTGGAATCATCCCTTATGCAGGCATTGATTTAGCTGCATATGAAACTTTAAAGGATTTGTCAAAGGTTTACATTCTTCATGATAGTGGTACAGCTTTAACTTGTGCCTTCTCAACTGTTACTACCTATTTTCTCCAAGAAAATGAAAACTAATTTCCTACGAATTGTGCATGTAATGCAGAAGCCGGCCCTCTTGTGCAACTGGGATGTGGGACTATTTCAGGAGCCCTGGGAGCAACATGTGTTTATCCTTTGCAGGTTATTCGGACCAGGTAAACTCTGCAGTTTGATTCTAGTTGCCAACAACTGCCAATTTTTCTATTTGGAAGGTGTAGCTTTCTGGTTTATCATGTGACGTGTCGTTTTTTAACTCAAATTATACTCTTTCTAGAATGCAAGCTGATTCTGCATACCAAGGTATGGCTGATGTGTTCCGAAAAACAGTTCAGCGTGAAGGCTTCAGGGGATTCTACAAAGGACTTTTTCCAAATCTTTTAAAAGTTGTGCCAGCAGCAAGCATAACCTATCTTGTGTACGAATCAATGAAAAAGAGTCTAGATCTTGATTAGCTGACATAGAGTCAGCAGCAGATTTCAGGTTCAAACTGCTGATGAAGATGATGATGATAATGTGACATTAAATAAGATAAATTTAGCTCATTGGTGATATGATTATCAAAATCATACACCTGATTTTTGACT</genome_strand>
        <mrna_strand>AACTTCTGGGCGTCTTGTGGCTGGTGGAATGGCAGGTGCAATAGCACAAACTGCTATATATCCCATGGATCTTGTTAAAACTCGGTTACAGACTCATTCATGTGAGAGTGGAAGCGTTCCTAGTCTGCGAAAACTATCAAAAGATATTTTTATACAAGAGGGACCTCGGGCATTTTATAGAGGATTGGTACCATCTCTGCTTGGAATCATCCCTTATGCAGGCATTGATTTAGCTGCATATGAAACTTTAAAGGATTTGTCAAAGGTTTACATTCTTCATGATAGTG.............................................................................................AAGCCGGCCCTCTTGTGCAACTGGGATGTGGGACTATTTCAGGAGCCCTGGGAGCAACATGTGTTTATCCTTTGCAGGTTATTCGGACCAG.......................................................................................................................AATGCAAGCTGATTCTGCATACCAAGGTATGGCTGATGTGTTCCGAAAAACAGTTCAGCGTGAAGGCTTCAGGGGATTCTACAAAGGACTTTTTCCAAATCTTTTAAAAGTTGTGCCAGCAGCAAGCATAACCTATCTTGTGTACGAATCAATGAAAAAGAGTCTAGATCTTGATTAGCTGACATAGAGTCAGCAGCAGATTTCAGGTTCAAACTGCTGATGAAGATGATGATGATAATGTGACATTAAATAAGATAAATTTAGCTCATTGGTGATATGATTATCAAAATCATACACCTGATTTTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311766" ref_strand="+" ref_description="SGN-E311766 [cLEZ-9-I20]">
      <seq>gctgatgtgttccgaaaaacagttcagcgtgaaggcttcaggggattctacaaaggactttttccaaatcttttaaaagttgtgccagcagcaagcataacctatcttgtgtacgaatcaatgaaaaagagtctagatcttgattagctgacatagagtcagcagcagatttcaggttcaaactgctgatgaagatgatgatgataatgtgacattaaataagataaatttagctcattggtgatatgattatcaaaatcatacacctgatttttgactccccattggttatcgatatcggcggggttatagttatagagttttgtttgtagattcaactgacaaaatgactacgttggcaattgagaatagtcctcttttacaatgtatgtctgagttataggaatatcaattctacactttttggcaactacatgttaaatgaaaaaagtgatgtgctgactttttaaggtttttgctatatggattatatgcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25415" stop="26511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25715" g_stop="26211" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="507"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E311766" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25715" e_stop="26211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATGTGTTCCGAAAAACAGTTCAGCGTGAAGGCTTCAGGGGATTCTACAAAGGACTTTTTCCAAATCTTTTAAAAGTTGTGCCAGCAGCAAGCATAACCTATCTTGTGTACGAATCAATGAAAAAGAGTCTAGATCTTGATTAGCTGACATAGAGTCAGCAGCAGATTTCAGGTTCAAACTGCTGATGAAGATGATGATGATAATGTGACATTAAATAAGATAAATTTAGCTCATTGGTGATATGATTATCAAAATCATACACCTGATTTTTGACTCCCCATTGGTTATCGATATCGGCGGGGTTATAGTTATAGAGTTTTGTTTGTAGATTCAACTGACAAAATGACTACGTTGGCAATTGAGAATAGTCCTCTTTTACAATGTATGTCTGAGTTATAGGAATATCAATTCTACACTTTTTGGCAACTACATGTTAAATGAAAAAAGTGATGTGCTGACTTTTTAAGGTTTTTGCTATATGGATTATATGCAA</genome_strand>
        <mrna_strand>GCTGATGTGTTCCGAAAAACAGTTCAGCGTGAAGGCTTCAGGGGATTCTACAAAGGACTTTTTCCAAATCTTTTAAAAGTTGTGCCAGCAGCAAGCATAACCTATCTTGTGTACGAATCAATGAAAAAGAGTCTAGATCTTGATTAGCTGACATAGAGTCAGCAGCAGATTTCAGGTTCAAACTGCTGATGAAGATGATGATGATAATGTGACATTAAATAAGATAAATTTAGCTCATTGGTGATATGATTATCAAAATCATACACCTGATTTTTGACTCCCCATTGGTTATCGATATCGGCGGGGTTATAGTTATAGAGTTTTGTTTGTAGATTCAACTGACAAAATGACTACGTTGGCAATTGAGAATAGTCCTCTTTTACAATGTATGTCTGAGTTATAGGAATATCAATTCTACACTTTTTGGCAACTACATGTTAAATGAAAAAAGTGATGTGCTGACTTTTTAAGGTTTTTGCTATATGGATTATATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721878" ref_strand="+" ref_description="SGN-E721878 [FC15CC07]">
      <seq>aatcggccgaattcccatggggatccgataaacaaggaacagagcttagggtttttttttttattggagcaatttgcaacatccgtgatcatacaaaagcttcaaggcaatatgggtattccaaaaatttcaaatgacactgacttgcttcaccctcctgctgagcttgaaaagcaaaagcacaagcttaagcgtttggtccaatcacctaattctacttttctggatgtcaaatgccaaggctgcttccaaataacaacaattttcacccactcgcaaaccggggttacatgccccaattgccagcaagtgctatgccagccaaccgggggccgtgcaaaacttactgaaggatgctcttttagggttaaaaaaaaggatatgatggtcttgggttgatacttgctaaaggtgcttttaagctatgatatattttacattaggtttttgaggaatgagtcggttaaaaaaacttttcatttactcagaacttcttttgtggcattctgactataatattgcccatcttgttagttttgacacatttttgaagaaattaatcttctactccatatttgcttgtgcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26545" stop="87902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26845" g_stop="26884" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="69" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26885" i_stop="27843" i_length="959">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27844" g_stop="27888" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="114" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27889" i_stop="27975" i_length="87">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27976" g_stop="28086" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="225" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28087" i_stop="28189" i_length="103">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28190" g_stop="28218" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="254" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28219" i_stop="28313" i_length="95">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28314" g_stop="28645" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="586" r_length="332" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28646" i_stop="28923" i_length="278">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.67"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28924" g_stop="28965" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="628" r_length="42" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E721878" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26845" e_stop="26884"/>
          <exon e_start="27844" e_stop="27888"/>
          <exon e_start="27976" e_stop="28086"/>
          <exon e_start="28190" e_stop="28218"/>
          <exon e_start="28314" e_stop="28645"/>
          <exon e_start="28924" e_stop="28965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAGGAACAGAGCTTAGGGTTTTTTTTTTTATTGGAGGTAACTCTCGTTTTCTGATCATCTCTTAACATTTAGAATTCTTTTTATCTCATACGTTGCATGCATGATCAATAGAGAATATGAATCTACATGTATATTTAAGCCGATTGTGTATAAGGATTACATTGAGTGGGTATGTTGTTGTTTGTTTGTTTAATCTATCAGTGTATTGGTCATTGATCCCTAGGTTTAATTTATGTAAGTGTGTAAGCAGATTACATTTATAATGCACAATATTTTTGGGGAGCCAGTGTATGTTTGTACCTTAGAAAGGTAGTGGAGATTTCCATAATTGTGATAAATTGTTCGAGGGGAAAGAAAAATGTGTATTGAAACCTTGGTGATAAACTGCATTAATGTGCAGAATTAGGTAAATAAGTTTCAGCTTTTATTTTAATAGTCCCTATGAGGACTGAATCTGTTGGTACATATACTCACTTGGGCGTGCCTTACATTGACAATTGAGTATGCATGCCTATAGGATGAAGTGATTAAATGTTCTTACCGGAAGAGTTATATATCCATAATGAGATCTGAAGAATTCATAGTTTTAGGATTGGTGAAGTCAAGGGCTATGTTTCTCGGACTCTTCAAAAATGCCAGCGGGTGCATGTAGATTTGCCAAAATAGTGTATTTTTGGTAGATTTGCCAGCGTGGTGTATTTTTGGTGATTCGTACATGGGTGGCATCAAATGTGAAGAGTCTGTAACTAAGGGCTAGGCGTTCTATTTTATCATGGAATGGGCTAGAATATAGGTAAATTAACGTAAAAGATTCATCGCAGATTCAGGCACATTATTTTTTATGACGAATGTGCTATGTCTTTTGATCGGTTTAGTTTCTCGAAGACATGACTAGCTCATCCCGGCCCCCCTATATTACCTACTGCAATTTCTTTTATGAATGTGTTGGTACGATCTCTTGTTTTTCTTAGTTTCTGCTTTCTTTTGATTGACAGCAATTTGCAACATCCGTGATCATACAAAAGCTTCAAGGCAATATGGTGAGTGACCACTTGAAATTCTTCAATATTTTGACATTGGTTTAGTTGGCAATTGTGGTTTAATGTTCTTTCCTGTGGCTCGATCAGGGTATTCCAAAGATTTCAAATGACACTGACTTGCTTCACCCTCCTGCTGAGCTTGAGAAGCAAAAGCACAAGCTTAAGCGTTTGGTCCAATCACCTAATTCTACTTTTCTGGTAATCTACTATCAATCATTGATATTTTAGATTTCCTTGTATATATGTATATACAGTATATGATTCCTTGCCTTGCTTGTGTAACGTTTATATACTGTTGCAGGATGTCAAATGCCAAGGCTGCTTCCAAATGTAAGTAACTGAAAAAACAGTGGTTAATGTCGTTGTTTTTACAAGTGTGTCACTTGTTAGTTATGTACTAATAATTTTGTCTTAATTCCTTACAGAACAACAATTTTCAGCCACTCGCAAACCGTGGTTACATGCCCCAATTGCCAGCAAGTGCTATGCCAGCCAACCGGTGGCCGTGCAAAACTTACTGAAGGATGCTCTTTTAGGGTTAAAGAGAAGGATATGATGGTCTTGGGTTGATACTTGCTAGAGGTGCTTTTAAGCTATGATATATTTTACATTAGGTTTTTGAGGAATGAGTCGGTTAAGAAAACTTTTCATTTACTCAGTACTTCTTTTGTGGCATTCTGACTATAATATTGTCCATCTTGTTAGTTTTGACACATTTTTGAAGTAATTAATCTTCTACTCCATATTTGCTTGTGCATTCATGTGTTGGTTTTGATGTTTAATGCTAGAACTGCATCTTATTCTGATTTTTTTTATTTACATGGCACTTAGTTTCATTGTGTAAACATGCTTTGAGTCTCTCTTGTAAGATTCAAACACATACTTTATAACTTTGCTGGTGAAGACTAAAGTGTGGCAAGAAAGTAGTGGAATTGGGGAGAACAGGATGATAGCATACGCGGGTAACACGAATCATTGTATTAAAAGAGAATTTCAACCCAAAACAAGCATACATTACATATAAAGTGGAACTTCAAAAACATTAACCCAAAACACAACAAAGGAAAAAAGAAAGAT</genome_strand>
        <mrna_strand>AAACAAGGAACAGAGCTTAGGGTTTTTTTTTTTATTGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTTGCAACATCCGTGATCATACAAAAGCTTCAAGGCAATATG.......................................................................................GGTATTCCAAAAATTTCAAATGACACTGACTTGCTTCACCCTCCTGCTGAGCTTGAAAAGCAAAAGCACAAGCTTAAGCGTTTGGTCCAATCACCTAATTCTACTTTTCTG.......................................................................................................GATGTCAAATGCCAAGGCTGCTTCCAAAT...............................................................................................AACAACAATTTTCACCCACTCGCAAACCGGGGTTACATGCCCCAATTGCCAGCAAGTGCTATGCCAGCCAACCGGGGGCCGTGCAAAACTTACTGAAGGATGCTCTTTTAGGGTTAAAAAAAAGGATATGATGGTCTTGGGTTGATACTTGCTAAAGGTGCTTTTAAGCTATGATATATTTTACATTAGGTTTTTGAGGAATGAGTCGGTTAAAAAAACTTTTCATTTACTCAGAACTTCTTTTGTGGCATTCTGACTATAATATTGCCCATCTTGTTAGTTTTGACACATTTTTGAAGAAATTAATCTTCTACTCCATATTTGCTTGTGCA......................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597901" ref_strand="+" ref_description="SGN-E597901 [73567]">
      <seq>ggagcaacttgcaacatctgtgatcgtacaaaagcttcaagacaatatgggtattccaaagatttcaaatgacactgacttgcttcaccctcctgctgagcttgagaagcaaaatcacaagcttaagcgtttggtccaatcacctaattctacttttctggatgtcaaatgccaaggctgcttccaaataacaacaattttcagccactcgcaaactgtggttacatgccccaattgccagcaagtgctatgccagccaagtggtggccgcgcaaaacttactgaaggatgctcttttagggttaaagagaaggatatgatggtcttgggttgatacttgctagaggtgcttttaagctatgatatattttaaactaggtttttaaagaatgagttggtcaagaaaacttttcctttgctcagtactttttttgatggcattttgactataatattgtccatcttgttagtcttgacacattttgaagtaattaatcttctactcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27669" stop="28933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27840" g_stop="27888" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27889" i_stop="27975" i_length="87">
            <donor d_prob="0.966" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27976" g_stop="28086" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="160" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28087" i_stop="28189" i_length="103">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28190" g_stop="28218" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="189" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28219" i_stop="28313" i_length="95">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28314" g_stop="28639" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="515" r_length="326" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E597901" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27840" e_stop="27888"/>
          <exon e_start="27976" e_stop="28086"/>
          <exon e_start="28190" e_stop="28218"/>
          <exon e_start="28314" e_stop="28639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCAATTTGCAACATCCGTGATCATACAAAAGCTTCAAGGCAATATGGTGAGTGACCACTTGAAATTCTTCAATATTTTGACATTGGTTTAGTTGGCAATTGTGGTTTAATGTTCTTTCCTGTGGCTCGATCAGGGTATTCCAAAGATTTCAAATGACACTGACTTGCTTCACCCTCCTGCTGAGCTTGAGAAGCAAAAGCACAAGCTTAAGCGTTTGGTCCAATCACCTAATTCTACTTTTCTGGTAATCTACTATCAATCATTGATATTTTAGATTTCCTTGTATATATGTATATACAGTATATGATTCCTTGCCTTGCTTGTGTAACGTTTATATACTGTTGCAGGATGTCAAATGCCAAGGCTGCTTCCAAATGTAAGTAACTGAAAAAACAGTGGTTAATGTCGTTGTTTTTACAAGTGTGTCACTTGTTAGTTATGTACTAATAATTTTGTCTTAATTCCTTACAGAACAACAATTTTCAGCCACTCGCAAACCGTGGTTACATGCCCCAATTGCCAGCAAGTGCTATGCCAGCCAACCGGTGGCCGTGCAAAACTTACTGAAGGATGCTCTTTTAGGGTTAAAGAGAAGGATATGATGGTCTTGGGTTGATACTTGCTAGAGGTGCTTTTAAGCTATGATATATTTTACATTAGGTTTTTGAGGAATGAGTCGGTTAAGAAAACTTTTCATTTACTCAGTACTTCTTTTG-TGGCATTCTGACTATAATATTGTCCATCTTGTTAGTTTTGACACATTTTTGAAGTAATTAATCTTCTACTCCATATTTGCT</genome_strand>
        <mrna_strand>GGAGCAACTTGCAACATCTGTGATCGTACAAAAGCTTCAAGACAATATG.......................................................................................GGTATTCCAAAGATTTCAAATGACACTGACTTGCTTCACCCTCCTGCTGAGCTTGAGAAGCAAAATCACAAGCTTAAGCGTTTGGTCCAATCACCTAATTCTACTTTTCTG.......................................................................................................GATGTCAAATGCCAAGGCTGCTTCCAAAT...............................................................................................AACAACAATTTTCAGCCACTCGCAAACTGTGGTTACATGCCCCAATTGCCAGCAAGTGCTATGCCAGCCAAGTGGTGGCCGCGCAAAACTTACTGAAGGATGCTCTTTTAGGGTTAAAGAGAAGGATATGATGGTCTTGGGTTGATACTTGCTAGAGGTGCTTTTAAGCTATGATATATTTTAAACTAGGTTTTTAAAGAATGAGTTGGTCAAGAAAACTTTTCCTTTGCTCAGTACTTTTTTTGATGGCATTTTGACTATAATATTGTCCATCTTGTTAGTCTTGACACA-TTTTGAAGTAATTAATCTTCTACTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450947" ref_strand="+" ref_description="SGN-E450947 [cSTS-10-P4]">
      <seq>gcttagggtttttttattggagcaacttgcaacatctgtgatcgtacaaaagcttcaagacaatatgggtattccaaagatttcaaatgacactgacttgcttcaccctcctgctgagcttgagaagcaaaatcacaagcttaagcgtttggtccaatcacctaattctacttttctggatgtcaaatgccaaggctgcttccaaataacaacaattttcagccactcgcaaaccgtggttacatgccccaattgccagcaagtgctatgccagccaactggtggccgcgcaaaacttactgaaggatgctcttttagggttaaagagaaggatatgatggtcttgggttgatacttgctagaggtgcttttcagctatgatatattttaaactaggtttttaacgaatgagttggacaagagaacttttcctttgctcggtactttttttaatggcattctgactataatattgtccatcttgttagtcttgacacattttgaagtaattaatcttctactccatgtttgctcattcatgtgttggttttgatgtttgatgctagaactgcatcttattctgattttgttgaataaatggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27669" stop="28967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27844" g_stop="27888" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="67" r_length="45" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27889" i_stop="27975" i_length="87">
            <donor d_prob="0.966" d_score="0.91"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27976" g_stop="28086" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="178" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28087" i_stop="28189" i_length="103">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28190" g_stop="28218" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="207" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28219" i_stop="28313" i_length="95">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28314" g_stop="28715" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="604" r_length="397" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E450947" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27844" e_stop="27888"/>
          <exon e_start="27976" e_stop="28086"/>
          <exon e_start="28190" e_stop="28218"/>
          <exon e_start="28314" e_stop="28715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTGCAACATCCGTGATCATACAAAAGCTTCAAGGCAATATGGTGAGTGACCACTTGAAATTCTTCAATATTTTGACATTGGTTTAGTTGGCAATTGTGGTTTAATGTTCTTTCCTGTGGCTCGATCAGGGTATTCCAAAGATTTCAAATGACACTGACTTGCTTCACCCTCCTGCTGAGCTTGAGAAGCAAAAGCACAAGCTTAAGCGTTTGGTCCAATCACCTAATTCTACTTTTCTGGTAATCTACTATCAATCATTGATATTTTAGATTTCCTTGTATATATGTATATACAGTATATGATTCCTTGCCTTGCTTGTGTAACGTTTATATACTGTTGCAGGATGTCAAATGCCAAGGCTGCTTCCAAATGTAAGTAACTGAAAAAACAGTGGTTAATGTCGTTGTTTTTACAAGTGTGTCACTTGTTAGTTATGTACTAATAATTTTGTCTTAATTCCTTACAGAACAACAATTTTCAGCCACTCGCAAACCGTGGTTACATGCCCCAATTGCCAGCAAGTGCTATGCCAGCCAACCGGTGGCCGTGCAAAACTTACTGAAGGATGCTCTTTTAGGGTTAAAGAGAAGGATATGATGGTCTTGGGTTGATACTTGCTAGAGGTGCTTTTAAGCTATGATATATTTTACATTAGGTTTTTGAGGAATGAGTCGGTTAAGAAAACTTTTCATTTACTCAGTACTTCTTTT-GTGGCATTCTGACTATAATATTGTCCATCTTGTTAGTTTTGACACATTTTTGAAGTAATTAATCTTCTACTCCATATTTGCTTGTGCATTCATGTGTTGGTTTTGATGTTTAATGCTAGAACTGCATCTTATTCTGATTTTTTTTATTTACATGGCAC</genome_strand>
        <mrna_strand>CAACTTGCAACATCTGTGATCGTACAAAAGCTTCAAGACAATATG.......................................................................................GGTATTCCAAAGATTTCAAATGACACTGACTTGCTTCACCCTCCTGCTGAGCTTGAGAAGCAAAATCACAAGCTTAAGCGTTTGGTCCAATCACCTAATTCTACTTTTCTG.......................................................................................................GATGTCAAATGCCAAGGCTGCTTCCAAAT...............................................................................................AACAACAATTTTCAGCCACTCGCAAACCGTGGTTACATGCCCCAATTGCCAGCAAGTGCTATGCCAGCCAACTGGTGGCCGCGCAAAACTTACTGAAGGATGCTCTTTTAGGGTTAAAGAGAAGGATATGATGGTCTTGGGTTGATACTTGCTAGAGGTGCTTTTCAGCTATGATATATTTTAAACTAGGTTTTTAACGAATGAGTTGGACAAGAGAACTTTTCCTTTGCTCGGTACTTTTTTTAATGGCATTCTGACTATAATATTGTCCATCTTGTTAGTCTTGACACA-TTTTGAAGTAATTAATCTTCTACTCCATGTTTGC---T-CATTCATGTGTTGGTTTTGATGTTTGATGCTAGAACTGCATCTTATTCTGATTTTGTTGA-ATAAATGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423661" ref_strand="-" ref_description="SGN-E423661 [STM-42-I14]">
      <seq>gcttagggtttttttattggagcaacttgcaacatctgtgatcgtacaaaagcttcaagacaatatgggtattccaaagatttcaaatgacactgacttgcttcaccctcctgctgagcttgagaagcaaaatcacaagcttaagcgtttggtccaatcacctaattctacttttctggatgtcaaatgccaaggctgcttccaaataacaacaattttcagccactcgcaaaccgtggttacatgccccaattgccagcaagtgctatgccagccaactggtggccgcgcaaaacttactgaaggatgctcttttagggttaaagagaaggatatgatggtcttgggttgatacttgctagaggtgcttttcagctatgatatattttaaactaggtttttaacgaatgagttggacaagagaacttttcctttgctcggtactttttttaatggcattctgactataatattgtccatcttgttagtcttgacacattttgaagtaattaatcttctactccatgtttgctcattcatgtgaaagttttgatgtttgatgctagaactgcatcttattctgattttgttgaaataggtacctcttagttccctgccccaattttgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27669" stop="29025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27844" g_stop="27888" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="67" r_length="45" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27889" i_stop="27975" i_length="87">
            <donor d_prob="0.966" d_score="0.91"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27976" g_stop="28086" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="178" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28087" i_stop="28189" i_length="103">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28190" g_stop="28218" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="207" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28219" i_stop="28313" i_length="95">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28314" g_stop="28711" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="601" r_length="394" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E423661" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423661" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27844" e_stop="27888"/>
          <exon e_start="27976" e_stop="28086"/>
          <exon e_start="28190" e_stop="28218"/>
          <exon e_start="28314" e_stop="28711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTGCAACATCCGTGATCATACAAAAGCTTCAAGGCAATATGGTGAGTGACCACTTGAAATTCTTCAATATTTTGACATTGGTTTAGTTGGCAATTGTGGTTTAATGTTCTTTCCTGTGGCTCGATCAGGGTATTCCAAAGATTTCAAATGACACTGACTTGCTTCACCCTCCTGCTGAGCTTGAGAAGCAAAAGCACAAGCTTAAGCGTTTGGTCCAATCACCTAATTCTACTTTTCTGGTAATCTACTATCAATCATTGATATTTTAGATTTCCTTGTATATATGTATATACAGTATATGATTCCTTGCCTTGCTTGTGTAACGTTTATATACTGTTGCAGGATGTCAAATGCCAAGGCTGCTTCCAAATGTAAGTAACTGAAAAAACAGTGGTTAATGTCGTTGTTTTTACAAGTGTGTCACTTGTTAGTTATGTACTAATAATTTTGTCTTAATTCCTTACAGAACAACAATTTTCAGCCACTCGCAAACCGTGGTTACATGCCCCAATTGCCAGCAAGTGCTATGCCAGCCAACCGGTGGCCGTGCAAAACTTACTGAAGGATGCTCTTTTAGGGTTAAAGAGAAGGATATGATGGTCTTGGGTTGATACTTGCTAGAGGTGCTTTTAAGCTATGATATATTTTACATTAGGTTTTTGAGGAATGAGTCGGTTAAGAAAACTTTTCATTTACTCAGTACTTCTTTT-GTGGCATTCTGACTATAATATTGTCCATCTTGTTAGTTTTGACACATTTTTGAAGTAATTAATCTTCTACTCCATATTTGCTTGTGCATTCATGTGTTGGTTTTGATGTTTAATGCTAGAACTGCATCTTATTCTGATTTTTTTTATTTACATG</genome_strand>
        <mrna_strand>CAACTTGCAACATCTGTGATCGTACAAAAGCTTCAAGACAATATG.......................................................................................GGTATTCCAAAGATTTCAAATGACACTGACTTGCTTCACCCTCCTGCTGAGCTTGAGAAGCAAAATCACAAGCTTAAGCGTTTGGTCCAATCACCTAATTCTACTTTTCTG.......................................................................................................GATGTCAAATGCCAAGGCTGCTTCCAAAT...............................................................................................AACAACAATTTTCAGCCACTCGCAAACCGTGGTTACATGCCCCAATTGCCAGCAAGTGCTATGCCAGCCAACTGGTGGCCGCGCAAAACTTACTGAAGGATGCTCTTTTAGGGTTAAAGAGAAGGATATGATGGTCTTGGGTTGATACTTGCTAGAGGTGCTTTTCAGCTATGATATATTTTAAACTAGGTTTTTAACGAATGAGTTGGACAAGAGAACTTTTCCTTTGCTCGGTACTTTTTTTAATGGCATTCTGACTATAATATTGTCCATCTTGTTAGTCTTGACACA-TTTTGAAGTAATTAATCTTCTACTCCATGTTTGC---T-CATTCATGTGAAAGTTTTGATGTTTGATGCTAGAACTGCATCTTATTCTGATTTTGTTGAAATAGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423660" ref_strand="+" ref_description="SGN-E423660 [STM-42-I14]">
      <seq>gcttagggtttttttattggagcaacttgcaacatctgtgatcgtacaaaagcttcaagacaatatgggtattccaaagatttcaaatgacactgacttgcttcaccctcctgctgagcttgagaagcaaaatcacaagcttaagcgtttggtccaatcacctaattctacttttctggatgtcaaatgccaaggctgcttccaaataacaacaattttcagccactcgcaaaccgtggttacatgccccaattgccagcaagtgctatgccagccaactggtggccgcgcaaaacttactgaaggatgctcttttagggttaaagagaaggatatgatggtcttgggttgatacttgctagaggtgcttttcagctatgatatattttaaactaggtttttaacgaatgagttggacaagagaacttttcctttgctcggtactttttttaatggcattctgactataatattgtccatcttgttagtcttgacacattttgaagtaattaatcttctactccatgtttgctcattcatgtgttggttttgatgtttgatgctagaactgcatcttaatctgattttgttgaaataaatggctcttnagtcattgtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27669" stop="28967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27844" g_stop="27888" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="67" r_length="45" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27889" i_stop="27975" i_length="87">
            <donor d_prob="0.966" d_score="0.91"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27976" g_stop="28086" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="178" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28087" i_stop="28189" i_length="103">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28190" g_stop="28218" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="207" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28219" i_stop="28313" i_length="95">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28314" g_stop="28711" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="601" r_length="394" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="619" polyA_stop="628"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E423660" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27844" e_stop="27888"/>
          <exon e_start="27976" e_stop="28086"/>
          <exon e_start="28190" e_stop="28218"/>
          <exon e_start="28314" e_stop="28711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTGCAACATCCGTGATCATACAAAAGCTTCAAGGCAATATGGTGAGTGACCACTTGAAATTCTTCAATATTTTGACATTGGTTTAGTTGGCAATTGTGGTTTAATGTTCTTTCCTGTGGCTCGATCAGGGTATTCCAAAGATTTCAAATGACACTGACTTGCTTCACCCTCCTGCTGAGCTTGAGAAGCAAAAGCACAAGCTTAAGCGTTTGGTCCAATCACCTAATTCTACTTTTCTGGTAATCTACTATCAATCATTGATATTTTAGATTTCCTTGTATATATGTATATACAGTATATGATTCCTTGCCTTGCTTGTGTAACGTTTATATACTGTTGCAGGATGTCAAATGCCAAGGCTGCTTCCAAATGTAAGTAACTGAAAAAACAGTGGTTAATGTCGTTGTTTTTACAAGTGTGTCACTTGTTAGTTATGTACTAATAATTTTGTCTTAATTCCTTACAGAACAACAATTTTCAGCCACTCGCAAACCGTGGTTACATGCCCCAATTGCCAGCAAGTGCTATGCCAGCCAACCGGTGGCCGTGCAAAACTTACTGAAGGATGCTCTTTTAGGGTTAAAGAGAAGGATATGATGGTCTTGGGTTGATACTTGCTAGAGGTGCTTTTAAGCTATGATATATTTTACATTAGGTTTTTGAGGAATGAGTCGGTTAAGAAAACTTTTCATTTACTCAGTACTTCTTTT-GTGGCATTCTGACTATAATATTGTCCATCTTGTTAGTTTTGACACATTTTTGAAGTAATTAATCTTCTACTCCATATTTGCTTGTGCATTCATGTGTTGGTTTTGATGTTTAATGCTAGAACTGCATCTTATTCTGATTTTTTTTATTTACATG</genome_strand>
        <mrna_strand>CAACTTGCAACATCTGTGATCGTACAAAAGCTTCAAGACAATATG.......................................................................................GGTATTCCAAAGATTTCAAATGACACTGACTTGCTTCACCCTCCTGCTGAGCTTGAGAAGCAAAATCACAAGCTTAAGCGTTTGGTCCAATCACCTAATTCTACTTTTCTG.......................................................................................................GATGTCAAATGCCAAGGCTGCTTCCAAAT...............................................................................................AACAACAATTTTCAGCCACTCGCAAACCGTGGTTACATGCCCCAATTGCCAGCAAGTGCTATGCCAGCCAACTGGTGGCCGCGCAAAACTTACTGAAGGATGCTCTTTTAGGGTTAAAGAGAAGGATATGATGGTCTTGGGTTGATACTTGCTAGAGGTGCTTTTCAGCTATGATATATTTTAAACTAGGTTTTTAACGAATGAGTTGGACAAGAGAACTTTTCCTTTGCTCGGTACTTTTTTTAATGGCATTCTGACTATAATATTGTCCATCTTGTTAGTCTTGACACA-TTTTGAAGTAATTAATCTTCTACTCCATGTTTGC---T-CATTCATGTGTTGGTTTTGATGTTTGATGCTAGAACTGCATCTTAATCTGATTTTGTTGAAATAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458893" ref_strand="+" ref_description="SGN-E458893 [cPRO-32-P19]">
      <seq>gtcaaatgccaaggctgcttccaaataacaacaattttcagccactcgcaaaccgtggttacatgccccaattgccagcaagtgctatgccagccaactggtggccgcgcaaaacttactgaaggatgctcttttagggttaaagagaaggatatgatggtcttgggttgatacttgctagaggtgcttttcagctatgatatattttaaactaggtttttaacgaatgagttggacaagagaacttttcctttgctcggtactttttttaatggcattctgactataatattgtccatcttgttagtcttgacacattttgaagtaattaatcttctactccatgtttgctcattcatgtgttggttttgatgtttgatgctagaactgcatcttattctgattttgttgaaataaatggctcttagttccattgtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27893" stop="29035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28193" g_stop="28218" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28219" i_stop="28313" i_length="95">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28314" g_stop="28741" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="450" r_length="424" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E458893" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28193" e_stop="28218"/>
          <exon e_start="28314" e_stop="28741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAATGCCAAGGCTGCTTCCAAATGTAAGTAACTGAAAAAACAGTGGTTAATGTCGTTGTTTTTACAAGTGTGTCACTTGTTAGTTATGTACTAATAATTTTGTCTTAATTCCTTACAGAACAACAATTTTCAGCCACTCGCAAACCGTGGTTACATGCCCCAATTGCCAGCAAGTGCTATGCCAGCCAACCGGTGGCCGTGCAAAACTTACTGAAGGATGCTCTTTTAGGGTTAAAGAGAAGGATATGATGGTCTTGGGTTGATACTTGCTAGAGGTGCTTTTAAGCTATGATATATTTTACATTAGGTTTTTGAGGAATGAGTCGGTTAAGAAAACTTTTCATTTACTCAGTACTTCTTTT-GTGGCATTCTGACTATAATATTGTCCATCTTGTTAGTTTTGACACATTTTTGAAGTAATTAATCTTCTACTCCATATTTGCTTGTGCATTCATGTGTTGGTTTTGATGTTTAATGCTAGAACTGCATCTTATTCTGATTTTTTTTATTTACATGGCACTTAGTTTCATTGTGTAAACATGCTTT</genome_strand>
        <mrna_strand>GTCAAATGCCAAGGCTGCTTCCAAAT...............................................................................................AACAACAATTTTCAGCCACTCGCAAACCGTGGTTACATGCCCCAATTGCCAGCAAGTGCTATGCCAGCCAACTGGTGGCCGCGCAAAACTTACTGAAGGATGCTCTTTTAGGGTTAAAGAGAAGGATATGATGGTCTTGGGTTGATACTTGCTAGAGGTGCTTTTCAGCTATGATATATTTTAAACTAGGTTTTTAACGAATGAGTTGGACAAGAGAACTTTTCCTTTGCTCGGTACTTTTTTTAATGGCATTCTGACTATAATATTGTCCATCTTGTTAGTCTTGACACA-TTTTGAAGTAATTAATCTTCTACTCCATGTTTGC---T-CATTCATGTGTTGGTTTTGATGTTTGATGCTAGAACTGCATCTTATTCTGATTTTGTTGAAATAAATGGCTCTTAGTTCCATTGTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697871" ref_strand="+" ref_description="SGN-E697871 [FA04CB12]">
      <seq>cgaggatccagatgatctttcgtccagggacatcatgttaggtgatccattttcagttgatattacaaaactcactgttgggtatctcgaagacgctgacaaggaagttgttggtgtacttagatcaaagggagtgaatatggttccatttaatctggattacactgttgatagtgctcaaggtattgttagcttcactatggatgttgacatgctagctcattttgacgagtggcagcgctcaaaccaggatgatgaatttgaagctcaagaccaatggcctcttgaacttcgtcgtgcccgtgttatatctgctgtagactatattcaggcacagagaagtcgaagcaaattgattcaggaagtgaaagagaacttcacagttgatgcatttattggagattcaggtgactgggagaaagtttgtgtgggcaatcttgtgggtatgccagtagtggtggttccaacaggttttaagaagatatccaatgcatcgtctgatgatactcgcaggaagacaacaataactactggcatttatgctcctcctgaccacgatcatgttgctttagcattggcaatggcgtatcagtcactaaccaaccatcacaagcagcgccctccaattgacgacattgggccaaatgattcaattccaaacccacccacttccactgtacccgcaagacaactacgtgattactaatctctcaagggtattcaatgtcactctgtgttgtccttttaacttgctattatagatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35170" stop="33378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34872" g_stop="34767" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34766" i_stop="34663" i_length="104">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34662" g_stop="34438" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="331" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34437" i_stop="34324" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.252" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34323" g_stop="34090" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="565" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34089" i_stop="33879" i_length="211">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33878" g_stop="33678" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="766" r_length="201" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E697871" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34872" e_stop="34767"/>
          <exon e_start="34662" e_stop="34438"/>
          <exon e_start="34323" e_stop="34090"/>
          <exon e_start="33878" e_stop="33678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGATCCAGATGATCTTTCGTCCAGGGACATCATGTTAGGTGATCCATTTTCAGTTGATATTACAAAACTCACTGTTGGGTATCTCGAAGACGCTGACAAGGAAGTAAGTGATTGTACAACATTACCAGAAATTCACTATGCAAATTAGATTCTTTATCCTCTTTGAAAGCCCGAATTAACTAGACTGTTTAATTATGTCAATTACAGGTTGTTGGTGTACTTAGATCAAAGGGAGTGAATATGGTTCCATTTAATCTGGATTACACTGTTGATAGTGCTCAAGGTATTGTTAGCTTCACTATGGATGTTGACATGCTAGCTCATTTTGACGAGTGGCAGCGCTCAAACCAGGATGATGAATTTGAAGCTCAAGACCAATGGCCTCTTGAACTTCGTCGTGCCCGTGTTATATCTGCTGTAGACTATATTCAGGTATATGTCACAATCTAGAATATATCGCTCTCTAGATGTTAAAACACATTGCCTCGGATAGAGCCCGATACACTTTACCGATCAAATAGCATTAAAGGTGGATGTACTTGACAGGCACAGAGAAGTCGAAGCAAATTGATTCAGGAAGTGAAAGAGAACTTCACAGTTGATGCATTTATTGGAGATTCAGGTGACTGGGAGAAAGTTTGTGTGGGCAATCTTGTGGGTATGCCAGTAGTGGTGGTTCCAACAGGTTTTAAGAAGATATCCAATGCATCGTCTGATGATACTCGCAGGAAGACAACAATAACTACTGGCATTTATGCTCCTCCTGACCACGATCATGTTGTAAGGCTCTAATCCTCTTATCTTGTATGTTTTGGATATAGGAAAATTTAGAATCCTAGAGTCTAGCTTGGTTTAATTTTCTCATATGTATATATGTGAACACTCACACATGGTTCGAGGGGAAAGTAATGTGTTCAGCTCAGAACCTGACTCCGTCCTCGTTGCTAGACTGATGACCTTGATTTTGTGTGTTCCTTCCTTTTATGCGCAGGCTTTAGCATTGGCAATGGCGTATCAGTCACTAACCAACCATCACAAGCAGCGCCCTCCAATTGACGACATTGGGCCAAATGATTCAATTCCAAACCCACCCACTTCCACTGTACCCGCAAGACAACTACGTGATTACTAATCTCTCAAGGGTATTCAATGTCACTCTGTGTTGTCCTTTTAACTTGTTATTATAGATGTA</genome_strand>
        <mrna_strand>CGAGGATCCAGATGATCTTTCGTCCAGGGACATCATGTTAGGTGATCCATTTTCAGTTGATATTACAAAACTCACTGTTGGGTATCTCGAAGACGCTGACAAGGAA........................................................................................................GTTGTTGGTGTACTTAGATCAAAGGGAGTGAATATGGTTCCATTTAATCTGGATTACACTGTTGATAGTGCTCAAGGTATTGTTAGCTTCACTATGGATGTTGACATGCTAGCTCATTTTGACGAGTGGCAGCGCTCAAACCAGGATGATGAATTTGAAGCTCAAGACCAATGGCCTCTTGAACTTCGTCGTGCCCGTGTTATATCTGCTGTAGACTATATTCAG..................................................................................................................GCACAGAGAAGTCGAAGCAAATTGATTCAGGAAGTGAAAGAGAACTTCACAGTTGATGCATTTATTGGAGATTCAGGTGACTGGGAGAAAGTTTGTGTGGGCAATCTTGTGGGTATGCCAGTAGTGGTGGTTCCAACAGGTTTTAAGAAGATATCCAATGCATCGTCTGATGATACTCGCAGGAAGACAACAATAACTACTGGCATTTATGCTCCTCCTGACCACGATCATGTT...................................................................................................................................................................................................................GCTTTAGCATTGGCAATGGCGTATCAGTCACTAACCAACCATCACAAGCAGCGCCCTCCAATTGACGACATTGGGCCAAATGATTCAATTCCAAACCCACCCACTTCCACTGTACCCGCAAGACAACTACGTGATTACTAATCTCTCAAGGGTATTCAATGTCACTCTGTGTTGTCCTTTTAACTTGCTATTATAGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727842" ref_strand="+" ref_description="SGN-E727842 [LA15DF04]">
      <seq>ggtttattcccgggacttcacctcaagtgggaaattagggcctaaaaactgtggcgaacacttggaacaagccaaaaatgagtttccggtatgtaaatgtggattcgacatgttggatgctggctttttcaatgactgtaagaagcttgaaatacagaagggcgcaaaagattttaacattcctataataagatcgaaccggaagttagttgctactgagaatggaggtttgcgtgacccgtctcctttagttttcaattctgcatggaaatcccaggaagcaaagcgagtaacggacaagttcaattattctgaatgctctggcattcaaaggccgaaaaatgatgaggatattgctttcatgagtgttcttgaactcgggcaacttttcaaggaaaaattgattacatccgaggaactcactcgaatttttctgaacagattaaaaaggtacggccctgtccttgaatctgttatcacaattactgaagaattagcatttcagcaagcaaaagaggctgatcaagtgcttgcaaaaggaaaatatttgggtcctcttcatgggatcccatatggtctaaaggacattattgcagtaccagattatcccacaacatggggttccaagtctttcaaagatcaagttattgatgtcgaagcttgggtttataagaggctgaaatctgctggtgcaattcttgttgcaaagttggtctctggttctttagcttatgacgatatctggttcggtggtagaacaagaaacccctggaatatcaaagaattttctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37464" stop="35273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37164" g_stop="37138" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37137" i_stop="37040" i_length="98">
            <donor d_prob="0.766" d_score="0.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37039" g_stop="36925" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="142" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36924" i_stop="36735" i_length="190">
            <donor d_prob="0.549" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36734" g_stop="36510" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="367" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36509" i_stop="36422" i_length="88">
            <donor d_prob="0.451" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36421" g_stop="36339" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="450" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36338" i_stop="36245" i_length="94">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.689" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36244" g_stop="36144" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="551" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36143" i_stop="35976" i_length="168">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35975" g_stop="35852" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="675" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="35851" i_stop="35691" i_length="161">
            <donor d_prob="0.438" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="35690" g_stop="35573" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="793" r_length="118" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E727842" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37164" e_stop="37138"/>
          <exon e_start="37039" e_stop="36925"/>
          <exon e_start="36734" e_stop="36510"/>
          <exon e_start="36421" e_stop="36339"/>
          <exon e_start="36244" e_stop="36144"/>
          <exon e_start="35975" e_stop="35852"/>
          <exon e_start="35690" e_stop="35573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTATTCCCGGGACTTCACCTCAAGGTAGTACATTCGAATTCGTAATCCAGGACAAAGATAGTATTCTTTGTTATTTGTTTGCTACTTTCTGTTTGATAATCTGTAGTCATTGCTCAGGACAGTGGGAAATTAGGGCCTAAAAACTGTGGCGAACACTTGGAACAAGCCAAAAATGAGTTTCCGGTATGTAAATGTGGATTCGACATGTTGGATGCTGGCTTTTTCAATGACTGTAAGGTACTGTGATGGAGTTAAATTCACTAAACAATTGTTAGCTGTGTTGCACGGATTATTCATAATTGTCGAGTGTTGTGTTTTGGATCCTCCAAAAGTAGCACATTTTTTTGGAGGATCTGACATCGAGTGCTCCCAATTGGAAAACTGAGTAAGGCTATTTTTGTGTCTGGTGCTGATTCTTTCTTTTCAGAAGCTTGAAATACAGAAGGGCGCAAAAGATTTTAACATTCCTATAATAAGATCGAACCGGAAGTTAGTTGCTACTGAGAATGGAGGTTTGCGTGACCCGTCTCCTTTAGTTTTCAATTCTGCATGGAAATCCCAGGAAGCAAAGCGAGTAACGGACAAGTTCAATTATTCTGAATGCTCTGGCATTCAAAGGCCGAAAAATGATGAGGATATTGCTTTCATGAGTGTACGTGCACCCTAAATAGCCATGCTAACGTAACCGTGTTGCACCACTGATTCCTAGTTTAATTTTATTATTTGAAATTGTTTATCAGGTTCTTGAACTCGGGCAACTTTTCAAGGAAAAATTGATTACATCCGAGGAACTCACTCGAATTTTTCTGAACAGATTAAAAAGGTATGGTGAATGAATGATTTGCTTTTGTTTATCTCATTTGCATGCTATTGAATAATTTTATTCTGAAAATGATGTGTTATGCCGGAGCTCGCAGGTACGGCCCTGTCCTTGAATCTGTTATCACAATTACTGAAGAATTAGCATTTCAGCAAGCAAAAGAGGCTGATCAAGTGCTTGCAAAAGGAAAATATTTGGGTAGAAGTCCACCTTCCTCTCTTCCCCTTAGTCCCCTTCCGCGTCCTCTCCACATTTTAGTTTTTGGATGTCACAGAAAATCTTCTAACATTTGTTTATATGGAGTGAAGTGTCTGGAGAGAGATGATATTGAAATTTCAGTTTGAATGACCATTCTGTTCTTTATAGGTCCTCTTCATGGGATCCCATATGGTCTAAAGGACATTATTGCAGTACCAGATTATCCCACAACATGGGGTTCCAAGTCTTTCAAAGATCAAGTTATTGATGTCGAAGCTTGGGTTTATAAGAGGTACTTACAAATCACTACAACTAGAAGGCATGCCGATCTTGCCACCAACAAACCTTTGACTTTGGCTGTGAAAAGCAATCAATAAATGTCGAGGCCACTCCCGAAGCCAGCCTATATTGTACATATGTTTGTATAATAATTTGTAGATACGGTTGATGCAGGCTGAAATCTGCTGGTGCAATTCTTGTTGCAAAGTTGGTCTCTGGTTCTTTAGCTTATGACGATATCTGGTTCGGTGGTAGAACAAGAAACCCCTGGAATATCGAAGAATTTTCTACT</genome_strand>
        <mrna_strand>GGTTTATTCCCGGGACTTCACCTCAAG..................................................................................................TGGGAAATTAGGGCCTAAAAACTGTGGCGAACACTTGGAACAAGCCAAAAATGAGTTTCCGGTATGTAAATGTGGATTCGACATGTTGGATGCTGGCTTTTTCAATGACTGTAAG..............................................................................................................................................................................................AAGCTTGAAATACAGAAGGGCGCAAAAGATTTTAACATTCCTATAATAAGATCGAACCGGAAGTTAGTTGCTACTGAGAATGGAGGTTTGCGTGACCCGTCTCCTTTAGTTTTCAATTCTGCATGGAAATCCCAGGAAGCAAAGCGAGTAACGGACAAGTTCAATTATTCTGAATGCTCTGGCATTCAAAGGCCGAAAAATGATGAGGATATTGCTTTCATGAGT........................................................................................GTTCTTGAACTCGGGCAACTTTTCAAGGAAAAATTGATTACATCCGAGGAACTCACTCGAATTTTTCTGAACAGATTAAAAAG..............................................................................................GTACGGCCCTGTCCTTGAATCTGTTATCACAATTACTGAAGAATTAGCATTTCAGCAAGCAAAAGAGGCTGATCAAGTGCTTGCAAAAGGAAAATATTTGG........................................................................................................................................................................GTCCTCTTCATGGGATCCCATATGGTCTAAAGGACATTATTGCAGTACCAGATTATCCCACAACATGGGGTTCCAAGTCTTTCAAAGATCAAGTTATTGATGTCGAAGCTTGGGTTTATAAGAG.................................................................................................................................................................GCTGAAATCTGCTGGTGCAATTCTTGTTGCAAAGTTGGTCTCTGGTTCTTTAGCTTATGACGATATCTGGTTCGGTGGTAGAACAAGAAACCCCTGGAATATCAAAGAATTTTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378113" ref_strand="+" ref_description="SGN-E378113 [TUS-21-H20](-)">
      <seq>attattgtacaagtgtttatgaaaaaggtgatgctcgatttgctttcatcgcgatgcttcaatccatcaatcatgctaaaaatggggtagacattgtatttggaacaaaagttaaaactcattttgctagacctaattggaaaaatgtttacaaacgcattgcttttaatcataataatgcaaaagttggagttttttactgtggggcaccagcactgacgaaacagcttggacaactggccttaaatttttcccccaaaacatcaacaaagtttgatttccataaaaaaaacttttggccaatcatgggctagcaaaggatcaaaccaaacaaataacaaccctttttttttataaaaaagcaaataaatcccctacttttttttttttttttttttataaaaaattttgttgattttgttaatagttgggttttgtattgttatacgaaaaacaattatttttgtgcagctcccccccccagtactggattggattaccaattcaaataatccttttattttaatttgttccttttgtaaaggatatatttatgttgatttatgttaaacgatattaaatgtcccccgttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40527" stop="38874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40227" g_stop="40039" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40038" i_stop="39580" i_length="459">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39579" g_stop="39181" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="589" r_length="400" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="593" polyA_stop="626"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E378113" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40227" e_stop="40039"/>
          <exon e_start="39579" e_stop="39181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTGTACAAGTGTTTATGAAGAAGGTGATGCTCGATCTGCTCTCATCGCGATGCTTCAATCCATCAATCATGCTAAAAATGGTGTAGACATTGTATCTGGAACAAGAGTTAAGACTCATTTTGCTAGACCTAATTGGAGAGATGTCTACAAACGCATTGCTCTTAATCATACTGATGCAAGAGTTGGTATGTACCTGAGACTTCCTATAATTTTAAGAATTTCAATTATATGCATAATAGTAAACACACACACGTTCTTTAATTTGGCCTCAGCTGATATAGACATAACACATAAATATGACTCTTAACTTGGCGTCACTTGACAATTACGATCTTGAACTTTACATATATATGAGCAGACACTTAGACTTGTATATAATTAAACAAATTGACATATTTATCTTACATGGCACTCTACATGGAAGATTTGTGTCCTACGTGTATCATGCCATGTAGGAAATGTATGTGTATTTGTTCAATTTTATATAAATTTAAGTGTATACTTGTGTACATCAAAGTTAAGGGTCATAGTTATCAACTGATATCAAAATTAAAAGTCATATTTATGTCATTTCAAATTTAAATCGTATAAATAAACACTTGAACTTATATAAAATTAAATGGTCGCTCTTTTAAAATTTGAAGGAGTTTTCTACTGTGGGGCACCAGCACTGACGAAACAGCTTGGACAACTGGCCTTAGATTTTTCCCACAAGACATCAACAAAGTTTGATTTCCATAAAGAAAACTTTTGACCAATCATGGACTAGCAAAGGATCAAACCAAACAGATAACAACCATTTTTTTTTATAAAGAAGCATATATATCCACTAC-TTTCTTTTTTTTTTTTTTTATAGAAAATCTTGTTGATTTTGTTAATAGTTGGGTTTTGTATTGTTATACGAAAAGCAATTATTTTTGTGCAGCTCCACCCACCAGTACTGGATTGGATTACCAATTCAAATAATCCTTTTATTTTAATTTGTTCCTTTTGTAAAGGATATATCTATGTTGATTTATGTTAAACGATATTAAATGTCCACA</genome_strand>
        <mrna_strand>ATTATTGTACAAGTGTTTATGAAAAAGGTGATGCTCGATTTGCTTTCATCGCGATGCTTCAATCCATCAATCATGCTAAAAATGGGGTAGACATTGTATTTGGAACAAAAGTTAAAACTCATTTTGCTAGACCTAATTGGAAAAATGTTTACAAACGCATTGCTTTTAATCATAATAATGCAAAAGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTTTACTGTGGGGCACCAGCACTGACGAAACAGCTTGGACAACTGGCCTTAAATTTTTCCCCCAAAACATCAACAAAGTTTGATTTCCATAAAAAAAACTTTTGGCCAATCATGGGCTAGCAAAGGATCAAACCAAACAAATAACAACCCTTTTTTTTTATAAAAAAGCAAATAAATCCCCTACTTTTTTTTTTTTTTTTTTTTATAAAAAATTTTGTTGATTTTGTTAATAGTTGGGTTTTGTATTGTTATACGAAAAACAATTATTTTTGTGCAGCTCCCCCCCCCAGTACTGGATTGGATTACCAATTCAAATAATCCTTTTATTTTAATTTGTTCCTTTTGTAAAGGATATATTTATGTTGATTTATGTTAAACGATATTAAATGTCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377222" ref_strand="+" ref_description="SGN-E377222 [TUS-19-L4](-)">
      <seq>tcaatccatcaatcatgctaaaaatggtgtagacattgtatttggaacaaaagttaaaactcattttgttagacctaattggaaaaatgtttacaaacgcattgtttttaatcataatgatgcaaaagttggagttttttactgtggggcaccagcactgacgaaacagcttggacaactggccttaaattttttccacaaaacatcaacaaagtttgatttccataaaaaaaacttttgaccaatcatgggctagcaaaggatcaaaccaaacaaataacaaccatttttttttataaaaaagaatataaatccactacttttttttttttttttttttataaaaaattttgttgattttgttaatagttgggttttgtattgttatacgaaaaacaattatttttgtgcagctcccccccccagtactggattggattaccaattcaaataatccttttattttaatttgttccttttgtaaaggatatatttatgttgatttatgttaaacgatattaaatgtccccagttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40469" stop="38874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40169" g_stop="40039" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40038" i_stop="39580" i_length="459">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39579" g_stop="39181" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="531" r_length="400" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="568"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E377222" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40169" e_stop="40039"/>
          <exon e_start="39579" e_stop="39181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCCATCAATCATGCTAAAAATGGTGTAGACATTGTATCTGGAACAAGAGTTAAGACTCATTTTGCTAGACCTAATTGGAGAGATGTCTACAAACGCATTGCTCTTAATCATACTGATGCAAGAGTTGGTATGTACCTGAGACTTCCTATAATTTTAAGAATTTCAATTATATGCATAATAGTAAACACACACACGTTCTTTAATTTGGCCTCAGCTGATATAGACATAACACATAAATATGACTCTTAACTTGGCGTCACTTGACAATTACGATCTTGAACTTTACATATATATGAGCAGACACTTAGACTTGTATATAATTAAACAAATTGACATATTTATCTTACATGGCACTCTACATGGAAGATTTGTGTCCTACGTGTATCATGCCATGTAGGAAATGTATGTGTATTTGTTCAATTTTATATAAATTTAAGTGTATACTTGTGTACATCAAAGTTAAGGGTCATAGTTATCAACTGATATCAAAATTAAAAGTCATATTTATGTCATTTCAAATTTAAATCGTATAAATAAACACTTGAACTTATATAAAATTAAATGGTCGCTCTTTTAAAATTTGAAGGAGTTTTCTACTGTGGGGCACCAGCACTGACGAAACAGCTTGGACAACTGGCCTTAGATTTTTCCCACAAGACATCAACAAAGTTTGATTTCCATAAAGAAAACTTTTGACCAATCATGGACTAGCAAAGGATCAAACCAAACAGATAACAACCATTTTTTTTTATAAAGAAGCATATATATCCACTAC-TTTCTTTTTTTTTTTTTTTATAGAAAATCTTGTTGATTTTGTTAATAGTTGGGTTTTGTATTGTTATACGAAAAGCAATTATTTTTGTGCAGCTCCACCCACCAGTACTGGATTGGATTACCAATTCAAATAATCCTTTTATTTTAATTTGTTCCTTTTGTAAAGGATATATCTATGTTGATTTATGTTAAACGATATTAAATGTCCACA</genome_strand>
        <mrna_strand>TCAATCCATCAATCATGCTAAAAATGGTGTAGACATTGTATTTGGAACAAAAGTTAAAACTCATTTTGTTAGACCTAATTGGAAAAATGTTTACAAACGCATTGTTTTTAATCATAATGATGCAAAAGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTTTACTGTGGGGCACCAGCACTGACGAAACAGCTTGGACAACTGGCCTTAAATTTTTTCCACAAAACATCAACAAAGTTTGATTTCCATAAAAAAAACTTTTGACCAATCATGGGCTAGCAAAGGATCAAACCAAACAAATAACAACCATTTTTTTTTATAAAAAAGAATATAAATCCACTACTTTTTTTTTTTTTTTTTTTTATAAAAAATTTTGTTGATTTTGTTAATAGTTGGGTTTTGTATTGTTATACGAAAAACAATTATTTTTGTGCAGCTCCCCCCCCCAGTACTGGATTGGATTACCAATTCAAATAATCCTTTTATTTTAATTTGTTCCTTTTGTAAAGGATATATTTATGTTGATTTATGTTAAACGATATTAAATGTCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411276" ref_strand="+" ref_description="SGN-E411276 [STM-14-M10]">
      <seq>ctttaactatatttatatggcgaacttgtcagaattgccatccgacctcattagtacagttgccgagcgtgtcaaagtgattgaagattttattgcttttggtgctgtttgtatctcatggcgaactgctgccacaagagataattttgatgtatcctcccaacaaattccattgcttatgctagcagataaagatgatgattatcgataattttactctctttccaaacacaaagtttcacgcatatttctcccacaagttagagggcgaagatgttttccatcagagggaggttggatgttcacagactcatgtacaggagaattatacttgtttcatcctttctcccgtacccaaattcaacttcctgcacaaaatgccctaaaggaggctttacagaaagacgcaaaaataactcattacactattgacaaagctgtcttatctgccaatccttctcttacatcagattatggtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41147" stop="42219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41440" g_stop="41919" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E411276" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41440" e_stop="41919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAACTAT-TT-ATATGGCGAACTTGTCAGAATTGCCATCTCACCTCATTAGTACAGTTGCCGAGCGTGTTAAAGTGATTGAAGATTTTATTGCTTTTGGTGCTGTCTGCATCTCATGGCGAACTGCTGCCACTAAAGATAATTTTGATGTATACTCTCCACAAATTCCATTGCTTATGCTAGCAGATAAAGATGATGATTATCGAGAATTTTACTCTCTTTCCAAAAACAAAATTTCACGCATATTTCTCCCAGAAATTAGAGGGCGAAGATGTTTTCCATCAGAGGGAGGTTGGATGTTTACAGACTCATGTACAGGAGAATTTAACTTGTTTCATCCATTTTCCCGTACCCAGATTCAACTTCCTTCACAAAACGCCCTAAAGGAGTCTTTACAGAAAGATGCAGAAATAACTCATTACACAATTGACAAAGCTGTCTTGTCTGTAAATCCTTCTCATACATCAGATTATGTGCTCG</genome_strand>
        <mrna_strand>CTTTAACTATATTTATATGGCGAACTTGTCAGAATTGCCATCCGACCTCATTAGTACAGTTGCCGAGCGTGTCAAAGTGATTGAAGATTTTATTGCTTTTGGTGCTGTTTGTATCTCATGGCGAACTGCTGCCACAAGAGATAATTTTGATGTATCCTCCCAACAAATTCCATTGCTTATGCTAGCAGATAAAGATGATGATTATCGATAATTTTACTCTCTTTCCAAACACAAAGTTTCACGCATATTTCTCCCACAAGTTAGAGGGCGAAGATGTTTTCCATCAGAGGGAGGTTGGATGTTCACAGACTCATGTACAGGAGAATTATACTTGTTTCATCCTTTCTCCCGTACCCAAATTCAACTTCCTGCACAAAATGCCCTAAAGGAGGCTTTACAGAAAGACGCAAAAATAACTCATTACACTATTGACAAAGCTGTCTTATCTGCCAATCCTTCTCTTACATCAGATTATG-GTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468358" ref_strand="+" ref_description="SGN-E468358 [cSTB-3-M10]">
      <seq>ctttaactatatttatatggcgaacttgtcagaattgccatccgacctcattagtacagttgccgagcgtgtcaaagtgattgaagattttattgcttttggtgctgcttgtatctcatggcgaactgctgccacaagagataattttgatgtatcctcccaacaaattccattgcttatgctagcagataaagatgatgattatcgagaattttactctctttccaaacacaaagtttcacgcatatttctcccacaagttagagggcgaagatgttttccatcagagggaggttggatgttcacagactcatgtacaggagaattttacttgtttcatcctttctcccgtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41147" stop="42092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41440" g_stop="41792" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E468358" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41440" e_stop="41792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAACTAT-TT-ATATGGCGAACTTGTCAGAATTGCCATCTCACCTCATTAGTACAGTTGCCGAGCGTGTTAAAGTGATTGAAGATTTTATTGCTTTTGGTGCTGTCTGCATCTCATGGCGAACTGCTGCCACTAAAGATAATTTTGATGTATACTCTCCACAAATTCCATTGCTTATGCTAGCAGATAAAGATGATGATTATCGAGAATTTTACTCTCTTTCCAAAAACAAAATTTCACGCATATTTCTCCCAGAAATTAGAGGGCGAAGATGTTTTCCATCAGAGGGAGGTTGGATGTTTACAGACTCATGTACAGGAGAATTTAACTTGTTTCATCCATTTTCCCGTACC</genome_strand>
        <mrna_strand>CTTTAACTATATTTATATGGCGAACTTGTCAGAATTGCCATCCGACCTCATTAGTACAGTTGCCGAGCGTGTCAAAGTGATTGAAGATTTTATTGCTTTTGGTGCTGCTTGTATCTCATGGCGAACTGCTGCCACAAGAGATAATTTTGATGTATCCTCCCAACAAATTCCATTGCTTATGCTAGCAGATAAAGATGATGATTATCGAGAATTTTACTCTCTTTCCAAACACAAAGTTTCACGCATATTTCTCCCACAAGTTAGAGGGCGAAGATGTTTTCCATCAGAGGGAGGTTGGATGTTCACAGACTCATGTACAGGAGAATTTTACTTGTTTCATCCTTTCTCCCGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452922" ref_strand="+" ref_description="SGN-E452922 [cSTS-18-I4]">
      <seq>gactcaagagtggaaggaacacatcactcctttattagtctctagtcattacattctttattgcaacaaagagcactataaaccctttcattttcaaccaaacataggagtagaggagaggagatggaggatttgtggcaaaaaatggtctttccggttagacgtgtttggggtgctgtttctgctcgtgtcaagcctcgtaaagatggtgctggattattgaagcttcaaggcgatatacagtcctgtggatatgaagatgtacaggtgatgtgggaaatgcttggagggacggagtcagagttgacatctcggcacattaagcgtaaaacgccaacagttgtttaggaattttgtacggttcaacaccatcctcctctacagatcacaccattgagacggtatgctgcactgcagaaataagagtatctgaagagtgaagagatgtatgttacttatatttctcaagcccctgngtagatatggggactttcatggcaacattatcagttgtaaatataccatcgccctgatgatgtatgaaaattcggcactaaataaagaaaaagaactatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48021" stop="49429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48301" g_stop="48514" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48515" i_stop="48753" i_length="239">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48754" g_stop="49136" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="587" r_length="379" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E452922" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48301" e_stop="48514"/>
          <exon e_start="48754" e_stop="49136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATCAAGAGTGGAAGCAAAACACATCACTCCTTTATTAATCTCCAGTCATTTCGTTCTTTATTGCAACAAAGAGCACACTGTAAACCCTTTAATTTTCAACCAAACATACAAGTAGAGGAAGAGGAGATGGAGGATTTGTGGCAAAAAATGGTCTTTCCGGTTAGACGTGTTTGGGGTGCTGTTTCTGCTCGTGTCAAGCCTCGTAAAGATGGTTAGTCATAAAACTTACCTGCATTCGGTGTTTTTGAACATATAGGAAGAAGCTACATATGAATGAACTAGTTTTAGTTTTTTTAAATCAAAACCTCTCCCCCTGTTTTTTCTACAATCTAACTTTTTAAAAAGAGACACTGTCTCATAAGTAATGACTAAGATGCAATGAATTGTAGAGTCTCAAGGAAAGAGTGAAAAAAACAGCTTTGTGGATTACTTACTTTTTGTTAACATCAGGTGCTGGATTACTGAAGCTTCAAGGCGATATACAGTCCTGTGGATATGAGGATGTACAGGTGATGTGGGAAATGCTTGGAGGGACGGATTCAGAGTTGACATCTCGGCACATCAAGCGTAAAGCGCCAACGGTTGTTTAGGCATTTTGAACGGTTAGCGCTAAACCATCCTCCTCTCCAGATCACACCATTGAGATGGTATGCTGCACTGCAGAAATAAGAGTATCTGAAGAGTGAAGAGATGTATGTTACTTGTAATTTTCAAGCCCCCAGGTAGATAGGGGGACTTTCATGACAACATTATCAGTTGTAAATATACCATCGCCCTGATGATGTATGAAAATTCGGCACTAAATAAATAAAAAGAACTATGAAGAGCTCATT</genome_strand>
        <mrna_strand>GAC-TCAAGAGTGGAAG-GAA-CACATCACTCCTTTATTAGTCTCTAGTCATTACATTCTTTATTGCAACAAAGAG--CACTATAAACCCTTTCATTTTCAACCAAACATAGGAGTAGAGG-AGAGGAGATGGAGGATTTGTGGCAAAAAATGGTCTTTCCGGTTAGACGTGTTTGGGGTGCTGTTTCTGCTCGTGTCAAGCCTCGTAAAGATG...............................................................................................................................................................................................................................................GTGCTGGATTATTGAAGCTTCAAGGCGATATACAGTCCTGTGGATATGAAGATGTACAGGTGATGTGGGAAATGCTTGGAGGGACGGAGTCAGAGTTGACATCTCGGCACATTAAGCGTAAAACGCCAACAGTTGTTTAGGAATTTTGTACGGTT----CAACACCATCCTCCTCTACAGATCACACCATTGAGACGGTATGCTGCACTGCAGAAATAAGAGTATCTGAAGAGTGAAGAGATGTATGTTACTTATATTTCTCAAGCCCCTGNGTAGATATGGGGACTTTCATGGCAACATTATCAGTTGTAAATATACCATCGCCCTGATGATGTATGAAAATTCGGCACTAAATAAAGAAAAAGAACTATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424672" ref_strand="+" ref_description="SGN-E424672 [STM-43-N14]">
      <seq>gactcaagagtggaaggaacacatcactcctttattagtctctagtcattacattctttattgcaacaaagagcactataaaccctttcattttcaaccaaacataggagtagaggagaggagatggaggatttgtggcaaaaaatggtctttccggttagacgtgtttggggtgctgtttctgctcgtgtcaagcctcgtaaagatggtgctggattattgaagcttcaaggcgatatacagtcctgtggatatgaagatgtacaggtgatgtgggaaatgcttggagggacggagtcagagttgacatctcggcacattaagcgtaaaacgccaacagttgtttaggaattttgtacggttcaacaccatcctcctctacagatcacaccattgagacggtatgctgcactgcagaaataaaagtatctgaagagtgaagagatgtatgttacttatatttctccagcccctggggagatatggggactttcatggcaacattatcagttgtaaatataacatcggcctgatgatgtatgaaaaatccggcccttaataaagaaaagaactatgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48021" stop="49429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48301" g_stop="48514" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48515" i_stop="48753" i_length="239">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48754" g_stop="49133" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="584" r_length="376" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E424672" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48301" e_stop="48514"/>
          <exon e_start="48754" e_stop="49133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATCAAGAGTGGAAGCAAAACACATCACTCCTTTATTAATCTCCAGTCATTTCGTTCTTTATTGCAACAAAGAGCACACTGTAAACCCTTTAATTTTCAACCAAACATACAAGTAGAGGAAGAGGAGATGGAGGATTTGTGGCAAAAAATGGTCTTTCCGGTTAGACGTGTTTGGGGTGCTGTTTCTGCTCGTGTCAAGCCTCGTAAAGATGGTTAGTCATAAAACTTACCTGCATTCGGTGTTTTTGAACATATAGGAAGAAGCTACATATGAATGAACTAGTTTTAGTTTTTTTAAATCAAAACCTCTCCCCCTGTTTTTTCTACAATCTAACTTTTTAAAAAGAGACACTGTCTCATAAGTAATGACTAAGATGCAATGAATTGTAGAGTCTCAAGGAAAGAGTGAAAAAAACAGCTTTGTGGATTACTTACTTTTTGTTAACATCAGGTGCTGGATTACTGAAGCTTCAAGGCGATATACAGTCCTGTGGATATGAGGATGTACAGGTGATGTGGGAAATGCTTGGAGGGACGGATTCAGAGTTGACATCTCGGCACATCAAGCGTAAAGCGCCAACGGTTGTTTAGGCATTTTGAACGGTTAGCGCTAAACCATCCTCCTCTCCAGATCACACCATTGAGATGGTATGCTGCACTGCAGAAATAAGAGTATCTGAAGAGTGAAGAGATGTATGTTACTTGTAATTTTCAAGCCCCCAGGTAGATAGGGGGACTTTCATGACAACATTATCAGTTGTAAATATACCATCGCCCTGATGATGTATG-AAAATTCGGCACTAAATAAATAAAAAGAACTATGAAGAGCTC</genome_strand>
        <mrna_strand>GAC-TCAAGAGTGGAAG-GAA-CACATCACTCCTTTATTAGTCTCTAGTCATTACATTCTTTATTGCAACAAAGAG--CACTATAAACCCTTTCATTTTCAACCAAACATAGGAGTAGAGG-AGAGGAGATGGAGGATTTGTGGCAAAAAATGGTCTTTCCGGTTAGACGTGTTTGGGGTGCTGTTTCTGCTCGTGTCAAGCCTCGTAAAGATG...............................................................................................................................................................................................................................................GTGCTGGATTATTGAAGCTTCAAGGCGATATACAGTCCTGTGGATATGAAGATGTACAGGTGATGTGGGAAATGCTTGGAGGGACGGAGTCAGAGTTGACATCTCGGCACATTAAGCGTAAAACGCCAACAGTTGTTTAGGAATTTTGTACGGTT----CAACACCATCCTCCTCTACAGATCACACCATTGAGACGGTATGCTGCACTGCAGAAATAAAAGTATCTGAAGAGTGAAGAGATGTATGTTACTTATATTTCTCCAGCCCCTGGGGAGATATGGGGACTTTCATGGCAACATTATCAGTTGTAAATATAACATCGGCCTGATGATGTATGAAAAATCCGGCCCTTAATAAA-GAAAAGAACTATGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424673" ref_strand="-" ref_description="SGN-E424673 [STM-43-N14]">
      <seq>gactcaagagtggaaggaacacatcactcctttattagtctctagtcattacattctttattgcaacaaagagcactataaaccctttcattttcaaccaaacataggagtagaggagaggagatggaggatttgtggcaaaaaatggtctttccggttagacgtgtttggggtgctgtttctgctcgtgtcaagcctcgtaaagatggtgctggattattgaagcttcaaggcgatatacagtcctgtggatatgaagatgtacaggtgatgtgggaaatgcttggagggacggagtcagagttgacatctcggcacattaagcgtaaaacgccaacagttgtttaggaattttgtacggttcaacaccatcctcctctacagatcacaccattgagacggtatgctgcactgcagaaataagagtatctgaagagtgaagagatgtatgttacttatatttctcaagcccctgggtagatatggggactttcatggcaacattatcagttgtaaatataccatcgccctgatgatgtatgaaaattcggcagtagaaaagaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48021" stop="49420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48301" g_stop="48514" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48515" i_stop="48753" i_length="239">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48754" g_stop="49120" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="570" r_length="362" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E424673" ref_strand="-">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424673" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48301" e_stop="48514"/>
          <exon e_start="48754" e_stop="49120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATCAAGAGTGGAAGCAAAACACATCACTCCTTTATTAATCTCCAGTCATTTCGTTCTTTATTGCAACAAAGAGCACACTGTAAACCCTTTAATTTTCAACCAAACATACAAGTAGAGGAAGAGGAGATGGAGGATTTGTGGCAAAAAATGGTCTTTCCGGTTAGACGTGTTTGGGGTGCTGTTTCTGCTCGTGTCAAGCCTCGTAAAGATGGTTAGTCATAAAACTTACCTGCATTCGGTGTTTTTGAACATATAGGAAGAAGCTACATATGAATGAACTAGTTTTAGTTTTTTTAAATCAAAACCTCTCCCCCTGTTTTTTCTACAATCTAACTTTTTAAAAAGAGACACTGTCTCATAAGTAATGACTAAGATGCAATGAATTGTAGAGTCTCAAGGAAAGAGTGAAAAAAACAGCTTTGTGGATTACTTACTTTTTGTTAACATCAGGTGCTGGATTACTGAAGCTTCAAGGCGATATACAGTCCTGTGGATATGAGGATGTACAGGTGATGTGGGAAATGCTTGGAGGGACGGATTCAGAGTTGACATCTCGGCACATCAAGCGTAAAGCGCCAACGGTTGTTTAGGCATTTTGAACGGTTAGCGCTAAACCATCCTCCTCTCCAGATCACACCATTGAGATGGTATGCTGCACTGCAGAAATAAGAGTATCTGAAGAGTGAAGAGATGTATGTTACTTGTAATTTTCAAGCCCCCAGGTAGATAGGGGGACTTTCATGACAACATTATCAGTTGTAAATATACCATCGCCCTGATGATGTATGAAAATTCGGCACTAAATAAATAAAAAGAA</genome_strand>
        <mrna_strand>GAC-TCAAGAGTGGAAG-GAA-CACATCACTCCTTTATTAGTCTCTAGTCATTACATTCTTTATTGCAACAAAGAG--CACTATAAACCCTTTCATTTTCAACCAAACATAGGAGTAGAGG-AGAGGAGATGGAGGATTTGTGGCAAAAAATGGTCTTTCCGGTTAGACGTGTTTGGGGTGCTGTTTCTGCTCGTGTCAAGCCTCGTAAAGATG...............................................................................................................................................................................................................................................GTGCTGGATTATTGAAGCTTCAAGGCGATATACAGTCCTGTGGATATGAAGATGTACAGGTGATGTGGGAAATGCTTGGAGGGACGGAGTCAGAGTTGACATCTCGGCACATTAAGCGTAAAACGCCAACAGTTGTTTAGGAATTTTGTACGGTT----CAACACCATCCTCCTCTACAGATCACACCATTGAGACGGTATGCTGCACTGCAGAAATAAGAGTATCTGAAGAGTGAAGAGATGTATGTTACTTATATTTCTCAAGCCCCTGGGTAGATATGGGGACTTTCATGGCAACATTATCAGTTGTAAATATACCATCGCCCTGATGATGTATGAAAATTCGGCAGTAGA-AAAGAAAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689231" ref_strand="+" ref_description="SGN-E689231 [t3_tus_80_K18]">
      <seq>cgttagagtggaagccaacacatcactcctttattaatctcctgtcatttcgttctttattgcaacaaagagcacactgtaaaccctttaattttcaaccaaacataccagtagaggaagaggagatggaggatttgtggcaaaaaatggtctttccggttagacgtgtttggggtgctgtttctgctcgtgtcaagcctcgtaaagatggtgctggattactgaagcttcaaggcgatatacagtcctgtggatatgaggatgtacaggtgatgtgggaaatgcttggagggacggattcagagttgacatctcggcacatcaggcgtaaagcgccaacggttgtttaggcattttgaacggttagcgctaaaccatcctcctctccagatcacaccattgagatggtatgctgcactgcagaaataagagtatctgaagagtgaagagatgtatgttacttgtaattttcaagcccccaggtagatcgggggactttcatgacaacattatcagttgtaaatataccatcgccctgatgatgtatgaaaattcggcactaaataaataaaaagaactatgaagagctcatttttttcctaanagaaaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48021" stop="49445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48303" g_stop="48514" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48515" i_stop="48753" i_length="239">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48754" g_stop="49145" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="602" r_length="392" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="607" polyA_stop="626"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E689231" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48303" e_stop="48514"/>
          <exon e_start="48754" e_stop="49145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAGAGTGGAAGCAAAACACATCACTCCTTTATTAATCTCCAGTCATTTCGTTCTTTATTGCAACAAAGAGCACACTGTAAACCCTTTAATTTTCAACCAAACATACAAGTAGAGGAAGAGGAGATGGAGGATTTGTGGCAAAAAATGGTCTTTCCGGTTAGACGTGTTTGGGGTGCTGTTTCTGCTCGTGTCAAGCCTCGTAAAGATGGTTAGTCATAAAACTTACCTGCATTCGGTGTTTTTGAACATATAGGAAGAAGCTACATATGAATGAACTAGTTTTAGTTTTTTTAAATCAAAACCTCTCCCCCTGTTTTTTCTACAATCTAACTTTTTAAAAAGAGACACTGTCTCATAAGTAATGACTAAGATGCAATGAATTGTAGAGTCTCAAGGAAAGAGTGAAAAAAACAGCTTTGTGGATTACTTACTTTTTGTTAACATCAGGTGCTGGATTACTGAAGCTTCAAGGCGATATACAGTCCTGTGGATATGAGGATGTACAGGTGATGTGGGAAATGCTTGGAGGGACGGATTCAGAGTTGACATCTCGGCACATCAAGCGTAAAGCGCCAACGGTTGTTTAGGCATTTTGAACGGTTAGCGCTAAACCATCCTCCTCTCCAGATCACACCATTGAGATGGTATGCTGCACTGCAGAAATAAGAGTATCTGAAGAGTGAAGAGATGTATGTTACTTGTAATTTTCAAGCCCCCAGGTAGATAGGGGGACTTTCATGACAACATTATCAGTTGTAAATATACCATCGCCCTGATGATGTATGAAAATTCGGCACTAAATAAATAAAAAGAACTATGAAGAGCTCATTTTTTTCCTA</genome_strand>
        <mrna_strand>CGTT-AGAGTGGAAGCCAA-CACATCACTCCTTTATTAATCTCCTGTCATTTCGTTCTTTATTGCAACAAAGAGCACACTGTAAACCCTTTAATTTTCAACCAAACATACCAGTAGAGGAAGAGGAGATGGAGGATTTGTGGCAAAAAATGGTCTTTCCGGTTAGACGTGTTTGGGGTGCTGTTTCTGCTCGTGTCAAGCCTCGTAAAGATG...............................................................................................................................................................................................................................................GTGCTGGATTACTGAAGCTTCAAGGCGATATACAGTCCTGTGGATATGAGGATGTACAGGTGATGTGGGAAATGCTTGGAGGGACGGATTCAGAGTTGACATCTCGGCACATCAGGCGTAAAGCGCCAACGGTTGTTTAGGCATTTTGAACGGTTAGCGCTAAACCATCCTCCTCTCCAGATCACACCATTGAGATGGTATGCTGCACTGCAGAAATAAGAGTATCTGAAGAGTGAAGAGATGTATGTTACTTGTAATTTTCAAGCCCCCAGGTAGATCGGGGGACTTTCATGACAACATTATCAGTTGTAAATATACCATCGCCCTGATGATGTATGAAAATTCGGCACTAAATAAATAAAAAGAACTATGAAGAGCTCATTTTTTTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734979" ref_strand="+" ref_description="SGN-E734979 [LB14AD10]">
      <seq>gctaaacacatcactcctttattaatctccagtcatttcgttctttattgcaacaaagagcacactgtaaaccctttaattttcaaccaaacatacaagtagaggaagaggagatggaggatttgtggcaaaaaatggtctttccggttagacgtgtttggggtgctgtttctgctcgtgtcaagcctcgtaaagatggtgctggattactgaagcttcaaggcgatatacagtcctgtggatatgaggatgtacaggtgatgtgggaaatgcttggagggacggattcagagttgacatctcggcacatcaagcgtaaagcgccaacggttgtttaggcattttgaacggttagcgctaaaccatcctcctctccagatcacaccattgagatggtatgctgcactgcagaaataagagtatctgaagagtgaagagatgtatgttacttgtaattttcaagcccccaggtagatagggggactttcatgacaacattatcagttgtaaatataccatcgccctgatgatgtatgaaaattcggcactaaataaataaaaagaactatgaagagctcatttttttcctannaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48017" stop="49445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48317" g_stop="48514" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48515" i_stop="48753" i_length="239">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48754" g_stop="49145" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="590" r_length="392" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49146" i_stop="49226" i_length="81">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49227" g_stop="49243" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="607" r_length="17" r_score="0.471"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E734979" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48317" e_stop="48514"/>
          <exon e_start="48754" e_stop="49145"/>
          <exon e_start="49227" e_stop="49243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAACACATCACTCCTTTATTAATCTCCAGTCATTTCGTTCTTTATTGCAACAAAGAGCACACTGTAAACCCTTTAATTTTCAACCAAACATACAAGTAGAGGAAGAGGAGATGGAGGATTTGTGGCAAAAAATGGTCTTTCCGGTTAGACGTGTTTGGGGTGCTGTTTCTGCTCGTGTCAAGCCTCGTAAAGATGGTTAGTCATAAAACTTACCTGCATTCGGTGTTTTTGAACATATAGGAAGAAGCTACATATGAATGAACTAGTTTTAGTTTTTTTAAATCAAAACCTCTCCCCCTGTTTTTTCTACAATCTAACTTTTTAAAAAGAGACACTGTCTCATAAGTAATGACTAAGATGCAATGAATTGTAGAGTCTCAAGGAAAGAGTGAAAAAAACAGCTTTGTGGATTACTTACTTTTTGTTAACATCAGGTGCTGGATTACTGAAGCTTCAAGGCGATATACAGTCCTGTGGATATGAGGATGTACAGGTGATGTGGGAAATGCTTGGAGGGACGGATTCAGAGTTGACATCTCGGCACATCAAGCGTAAAGCGCCAACGGTTGTTTAGGCATTTTGAACGGTTAGCGCTAAACCATCCTCCTCTCCAGATCACACCATTGAGATGGTATGCTGCACTGCAGAAATAAGAGTATCTGAAGAGTGAAGAGATGTATGTTACTTGTAATTTTCAAGCCCCCAGGTAGATAGGGGGACTTTCATGACAACATTATCAGTTGTAAATATACCATCGCCCTGATGATGTATGAAAATTCGGCACTAAATAAATAAAAAGAACTATGAAGAGCTCATTTTTTTCCTACTTTCTTTGCTTAAGTCTGATATACAGAAACAAAAGATTACTAGAAGAATGAAATCTATACCTGTTTTGGTGGCCATGTAGACACAACTCTAATAAAT</genome_strand>
        <mrna_strand>GCTAAACACATCACTCCTTTATTAATCTCCAGTCATTTCGTTCTTTATTGCAACAAAGAGCACACTGTAAACCCTTTAATTTTCAACCAAACATACAAGTAGAGGAAGAGGAGATGGAGGATTTGTGGCAAAAAATGGTCTTTCCGGTTAGACGTGTTTGGGGTGCTGTTTCTGCTCGTGTCAAGCCTCGTAAAGATG...............................................................................................................................................................................................................................................GTGCTGGATTACTGAAGCTTCAAGGCGATATACAGTCCTGTGGATATGAGGATGTACAGGTGATGTGGGAAATGCTTGGAGGGACGGATTCAGAGTTGACATCTCGGCACATCAAGCGTAAAGCGCCAACGGTTGTTTAGGCATTTTGAACGGTTAGCGCTAAACCATCCTCCTCTCCAGATCACACCATTGAGATGGTATGCTGCACTGCAGAAATAAGAGTATCTGAAGAGTGAAGAGATGTATGTTACTTGTAATTTTCAAGCCCCCAGGTAGATAGGGGGACTTTCATGACAACATTATCAGTTGTAAATATACCATCGCCCTGATGATGTATGAAAATTCGGCACTAAATAAATAAAAAGAACTATGAAGAGCTCATTTTTTTCCTA.................................................................................NNAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720194" ref_strand="+" ref_description="SGN-E720194 [FC10AD04]">
      <seq>gcggccaaatcggccgaattggcaacaaagagcacactctataccctttaattttcaaccaaacatacaagtagaggaagaggagatggaggatttgtggcaaaaaatggtctttccggttagacgtgtttggggtgctgtttctgctcgtgtcaagcctcgtaaagatggtgctggattactgaagcttcaaggcgatatacagtcctgtggatatgaggatgtacaggtgatgtgggaaatgcttggagggacggattcaaagttgacatctcggcacatcaagcgtaaagcgccaacggttgtttaggcattttgaacggttagcgctaaaccatcctcctctccagatcacaccattgagatggtatgctgcactgcaaaaataagagtatctgaagagtgaagagatgtatgttacttgtaattttcaagcccccaggtagatagggggactttcatgacaacattatcagttgtaaatataccatcgccctgatgatgtatgaaaattcggcactaaataaataaaaagaactatgaagagctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48063" stop="87902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48366" g_stop="48514" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="170" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48515" i_stop="48753" i_length="239">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48754" g_stop="49134" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="551" r_length="381" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49135" i_stop="50158" i_length="1024">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50159" g_stop="50205" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="598" r_length="47" r_score="0.638"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50206" i_stop="50917" i_length="712">
            <donor d_prob="0.840" d_score="0.64"/>
            <acceptor a_prob="0.790" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50918" g_stop="50945" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="626" r_length="28" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E720194" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48366" e_stop="48514"/>
          <exon e_start="48754" e_stop="49134"/>
          <exon e_start="50159" e_stop="50205"/>
          <exon e_start="50918" e_stop="50945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACAAAGAGCACACTGTAAACCCTTTAATTTTCAACCAAACATACAAGTAGAGGAAGAGGAGATGGAGGATTTGTGGCAAAAAATGGTCTTTCCGGTTAGACGTGTTTGGGGTGCTGTTTCTGCTCGTGTCAAGCCTCGTAAAGATGGTTAGTCATAAAACTTACCTGCATTCGGTGTTTTTGAACATATAGGAAGAAGCTACATATGAATGAACTAGTTTTAGTTTTTTTAAATCAAAACCTCTCCCCCTGTTTTTTCTACAATCTAACTTTTTAAAAAGAGACACTGTCTCATAAGTAATGACTAAGATGCAATGAATTGTAGAGTCTCAAGGAAAGAGTGAAAAAAACAGCTTTGTGGATTACTTACTTTTTGTTAACATCAGGTGCTGGATTACTGAAGCTTCAAGGCGATATACAGTCCTGTGGATATGAGGATGTACAGGTGATGTGGGAAATGCTTGGAGGGACGGATTCAGAGTTGACATCTCGGCACATCAAGCGTAAAGCGCCAACGGTTGTTTAGGCATTTTGAACGGTTAGCGCTAAACCATCCTCCTCTCCAGATCACACCATTGAGATGGTATGCTGCACTGCAGAAATAAGAGTATCTGAAGAGTGAAGAGATGTATGTTACTTGTAATTTTCAAGCCCCCAGGTAGATAGGGGGACTTTCATGACAACATTATCAGTTGTAAATATACCATCGCCCTGATGATGTATGAAAATTCGGCACTAAATAAATAAAAAGAACTATGAAGAGCTCATTTTTTTCCTACTTTCTTTGCTTAAGTCTGATATACAGAAACAAAAGATTACTAGAAGAATGAAATCTATACCTGTTTTGGTGGCCATGTAGACACAACTCTAATAAATTGGAGGCAATGTTATCCAAACAGGCCCATCCACAAGTTCATAGCTGAAAAAAAGAATCAAATTAAAACTTAGATGGACCATAAATAACAGAGTTTTTAATGTGCAGCGCCAGGCACTGCTGTGCTGCAAATCACCACTGGAAGGTCGATTGTATATGCTATGGATTATGGCTATCCCTTTTACTGATGTAGCCAGCATAGTTGCAACAATTGCGTGTAACCTATCACTTAAAACAATTCTGCTATTAAAAATTGATAGTGAAGCTCCACAGGAAGTGGTAATGTAATATGCATTCTTTCATGTGCATTTCTAAAATGATGGATATTTTGATGAACAGGACGTTACTGTAATATTATCTAATCATTCAGTCATTTAAGAAAATCTAGCAATAAAGGTAGTAGTAGTAGTAATAATCAAGGGCTCAGAACTTGGCCAAATTATCTAAGCAATCAATCACTTGAGATCTCATAATAACAAGTAGGGAAACATAAACAGGACTAAGTGGATAAGTCGAGACAATAGAGCAGGTCTGAAAGTATTGAAACAATTAAAAATAAACGTAGATCCCAGCTGATAATTAAGCATAGGCAATTAATGTACCTTTAGGACCAATGAATTTACTGCACTTTTTACATGCTCCCTCCTGAGTTGATAACTAAAAATGAGATGCTAAAACAACATTCAAGGGCACTAACTTGATAAGACGGATTGCTGTAGGGCTCCGAGTTGTGCTTTCTCCATTCAAATGTTAAAACATTCTGAGTTGGTTTTTTGTTGAGTTCCTGGAATGTTTTTTTGGCATAAGTTGAGTTTTGGGAAGTCTTGGAAAACAGTAGTTCAAACTGCTTTCAGATAAGTCTTTCATAAGACCAATGTATTCTAAAACCTGGATATGGCCATATCTGAAAAGTTTCCAAAATAAAAAAAGGAACCACATTAAGAGAAAAAAGCAGATAATCAAGGTAAACCATCACCTATGCGACTAAATTTCATGAGCTTCATACAAAACCCAGATACAGAAAGGCAAGAGAGAGCAGATTTGGGATACACTCCAGGAGACAATATCAATATCAATCTTAACCCTTTCCCTCACTCTTCGCAATCTCATAGCTACCGCTAACCAAGACACTGATAAAACATATTCTATGATTCAGCATTACTGTTCATAAACATTACAAGGAATCCACATAAGATTCAGAAGGGTACTCTTCTTGCTACACTTTATCTCTACTTCTCTTCACCCGTTTTATGCTACCATCCAACAGAAGTACGTAACCCAAGCCACATTCAACTAAAAAATTGATTCCTTTTAATTCAAAGTGTTATTCTGATTGCAGTGCTCCCTATTCTGTCAAGAGGTAAATCTGACAAATATGCTGAATAAATCTACTAAAATGTTTAAGGTCCAAGTACAATTGAACAGGAGGATATTCACGGCTACTAGCTATAAGGTTAAAGCCTTTCAGCTACTATGCCCCAAGTAAATTTCCATCCACCTTAACCTGAAGATTTACTGGGGTCGGGATAAGAGAGTGGCAGTTCAAACCTTTTAAACATCAAACCAAGTAAGCAACATGCCACTGCATAACTAGCTTGGACAAGAGCAAGACGAGAGTGCCAGCTTATGACAGTTAAAACTGGGCTGTTGATTTTTCAGTCTTTTAAATACATCAGCAGCTAACTAATACAGAAGGCAACATAA</genome_strand>
        <mrna_strand>GCAACAAAGAGCACACTCTATACCCTTTAATTTTCAACCAAACATACAAGTAGAGGAAGAGGAGATGGAGGATTTGTGGCAAAAAATGGTCTTTCCGGTTAGACGTGTTTGGGGTGCTGTTTCTGCTCGTGTCAAGCCTCGTAAAGATG...............................................................................................................................................................................................................................................GTGCTGGATTACTGAAGCTTCAAGGCGATATACAGTCCTGTGGATATGAGGATGTACAGGTGATGTGGGAAATGCTTGGAGGGACGGATTCAAAGTTGACATCTCGGCACATCAAGCGTAAAGCGCCAACGGTTGTTTAGGCATTTTGAACGGTTAGCGCTAAACCATCCTCCTCTCCAGATCACACCATTGAGATGGTATGCTGCACTGCAAAAATAAGAGTATCTGAAGAGTGAAGAGATGTATGTTACTTGTAATTTTCAAGCCCCCAGGTAGATAGGGGGACTTTCATGACAACATTATCAGTTGTAAATATACCATCGCCCTGATGATGTATGAAAATTCGGCACTAAATAAATAAAAAGAACTATGAAGAGCTCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581614" ref_strand="-" ref_description="SGN-E581614 [7241]">
      <seq>catgctcgctggtaacgctggtatcattgcaaagattttagggttgccatggagctgaacccccggcaacttggtgaagactggccactgctgctggagaaactaacacatgcagttgaggaataagacgtgcactttgctgtcttcacatcaagcttttaccagtcccaactggatcagagggcacagttctttccaagttttgtgcagtcactctgctacagttttctttacggccttttgatccagtaaacagctgttgaggtcaaactttgtctctttcaaggtgataaggacaagatccaggaatctttgtttgacctgctgcagggccttaattttggccagaggcatcccattcgttagcaaccactggaagggacttgaaaaaagaatgcccctgtcggttgcactgttgtatcattagcataattctctctaggtatctgcattctcctgtaattgatggtcaatgagcaaatttagaacagttttgcaggaataaatgtctagcctagtacttcagctgaaaggtgaaactgaatgatgcactagctgaatgtgtatgtatcttcaacatcaaaattgattgaggaacctcaacattaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59504" stop="58296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59204" g_stop="58601" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="612" polyA_stop="626"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E581614" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581614" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59204" e_stop="58601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGCTC-CAGGCAAC-CTGGTATCATTGCAA-GATTTTAGGGTTGCCATGGAACTGAACCCCCGGCAACTTGGTGAAGACTGGCCGCTGCTGCTGGAGAAACTAACACATGCAGTTGAGGAATAAGACATGTGCACTTCGCTGTCTTCAGGTCAAGCTTTTACCAGTCCCAGCTGGATCAGAGGGCACAGTTC-TTCCAAGTTTTATGTAGTCACTCTGCTACAGTTCTCTTTACGGCCTTTTGATCCAGTAAACAGCTGTTGAGGTCAAAC-TTGTCTC--TCATGGTGATAAAGGCAAGATCTAGGAATCTTTGTTTGACCAGCTGCATGGCCTTAATTTTGGCCAGAGGCATCCCATTCGTTAGCAACCACTGGAAGGGACTTGAAAAAAGAATGCCCCTGTTGGTTGCACTGTTGTATCATTAGCATAATTTTCTCTGGGTATCTGCATTCTCCTGTAATTTATGGTCAATGAGCAAATTTAGAACAGTTTTGCAGGAATAAATGTCTAGCCTAGTACTTCAGCTGAAAGGTGAAACTGAATGATGCACTAGCTGAATGTGTATGTATGTTCAACATCAAAATTGATT--GGAACCTCAACATTAACA</genome_strand>
        <mrna_strand>CATGCTCGCTGGTAACGCTGGTATCATTGCAAAGATTTTAGGGTTGCCATGGAGCTGAACCCCCGGCAACTTGGTGAAGACTGGCCACTGCTGCTGGAGAAACTAACACATGCAGTTGAGGAATAAGAC--GTGCACTTTGCTGTCTTCACATCAAGCTTTTACCAGTCCCAACTGGATCAGAGGGCACAGTTCTTTCCAAGTTTTGTGCAGTCACTCTGCTACAGTTTTCTTTACGGCCTTTTGATCCAGTAAACAGCTGTTGAGGTCAAACTTTGTCTCTTTCAAGGTGATAAGGACAAGATCCAGGAATCTTTGTTTGACCTGCTGCAGGGCCTTAATTTTGGCCAGAGGCATCCCATTCGTTAGCAACCACTGGAAGGGACTTGAAAAAAGAATGCCCCTGTCGGTTGCACTGTTGTATCATTAGCATAATTCTCTCTAGGTATCTGCATTCTCCTGTAATTGATGGTCAATGAGCAAATTTAGAACAGTTTTGCAGGAATAAATGTCTAGCCTAGTACTTCAGCTGAAAGGTGAAACTGAATGATGCACTAGCTGAATGTGTATGTATCTTCAACATCAAAATTGATTGAGGAACCTCAACATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423306" ref_strand="+" ref_description="SGN-E423306 [STM-41-H12]">
      <seq>caacaattttcaatcaaaactcgacaaattcccctgcagaggagagtagtgtagatcaacctgaaatcggcgaatcatcgttaagtttctgcgagatttgtgcagagagaaaagaaattgatgaaatgttcacaattgaatcttgcagccacgttttttgtactgattgtattaacaagcacgtctcaataaaaatccaggacaaaattcacgttgtgacatgtcctggtgtagcttgcaggggaattctcgatttcggaacgtgcatttcgattatacctaaagatgtacgtaatagttgggacgatttgttgtgtgaatcgcttattcttgcctcggagaaattctactgtccatataaagattgttcggcaatgctagtgaacgattcggacgatatagttagggaatcggagtgtcctgtttgccggagattgttctgcgcacaatgttatgtgccgtggcattgtggagttcaatgcgaagagtttcgggaaatgaatgtggatgaaagaagcagagaagatttaatggtgaaggaattagcaaaggcgaaacagtggactagatgtccttattgcagatttttcgtcgagaaaactgagggatgcttgcatatgacttgcaggtgtggatcacagttttgttataaatgtggaataaattggagaaacgatcatgcttgttatgcagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70959" stop="69719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70654" g_stop="70019" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="696" r_length="635" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E423306" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70654" e_stop="70019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATCGGCGAATCGTCTCTAAGTTTCTGCGAGATTTGTGCAGAGAGAAAAGAAATTGATGAAATGTTCACAATTGAATCTTGCAGCCATGTTTTTTGTGCTGATTGTATTAACAAGCACGTCTCAATAAAAATCCAGGACAAAATTCACGTTGTGACATGTCCTGGTGTAGCTTGCAGGGGAATTCTCGATTTTGAGACGTGCGTTTCAATCATACCTAAAGATGTACGTGATAGTTGGGACGAATTGTTGTGTGAATCGCTAATTCTCGCCTCGCAGAGATTTTACTGTCCATATAAAGATTGTTCAGCCATGCTAGTGAACGATTCGGATGAAATAGTTAGGGAATCGGAGTGTCCTGTTTGTCGGAGATTGTTCTGCGCGCAATGTTATGTGCCGTGGCATTATGATTTTCAATGTGAAGAG-TTCGGGAGAATGAATGTGGAGGAAAGAGACGGAGATGATTTAATGGTGATGGAATTAGCAAAGGCGAAACAGTGGACTAGATGTCCTTATTGCAGATTTTTCGTCGAGAAAACAGAGGGATGTTTGCATATGACTTGCAGATGTGGATCACAGTTTTGTTATAAATGTGGAATAACTTGGAGAAATAATCATGCTTGTTAATGCAATAC</genome_strand>
        <mrna_strand>TGAAATCGGCGAATCATCGTTAAGTTTCTGCGAGATTTGTGCAGAGAGAAAAGAAATTGATGAAATGTTCACAATTGAATCTTGCAGCCACGTTTTTTGTACTGATTGTATTAACAAGCACGTCTCAATAAAAATCCAGGACAAAATTCACGTTGTGACATGTCCTGGTGTAGCTTGCAGGGGAATTCTCGATTTCGGAACGTGCATTTCGATTATACCTAAAGATGTACGTAATAGTTGGGACGATTTGTTGTGTGAATCGCTTATTCTTGCCTCGGAGAAATTCTACTGTCCATATAAAGATTGTTCGGCAATGCTAGTGAACGATTCGGACGATATAGTTAGGGAATCGGAGTGTCCTGTTTGCCGGAGATTGTTCTGCGCACAATGTTATGTGCCGTGGCATTGTGGAGTTCAATGCGAAGAGTTTCGGGA-AATGAATGTGGATGAAAGAAGCAGAGAAGATTTAATGGTGAAGGAATTAGCAAAGGCGAAACAGTGGACTAGATGTCCTTATTGCAGATTTTTCGTCGAGAAAACTGAGGGATGCTTGCATATGACTTGCAGGTGTGGATCACAGTTTTGTTATAAATGTGGAATAAATTGGAGAAACGATCATGCTTGTT-ATGCAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284473" ref_strand="+" ref_description="SGN-E284473 [cLER-16-H22]">
      <seq>ttcaatgaaagacgagcaagcaggagaagttcctgtggcttttgttgtcagatcaaatggctccacaattactgaagatgaagtcaaagaattcataacaaagcaggtgatattatataaaaggataaagagggtattttgtgtggatgttggtcctaaatctccatcgggcaaaatccttagaaaggacttgagagctaaattagctgctggatatccaaattaaatactacttcatactttaatggcgatcgaataactataaccaatatttgtttttttttgttattgaaagttacatatttttgttctttgaattgtatgtgtacgttaaaccacctgcctctatacggttaaaattaattaaccaatttggcaaaaggagaaaaatgtatgtatatttgactgtaagggacttatttttttttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72116" stop="70814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71914" g_stop="71912" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71911" i_stop="71817" i_length="95">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71816" g_stop="71714" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="106" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71713" i_stop="71439" i_length="275">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71438" g_stop="71107" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="440" r_length="334" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E284473" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71914" e_stop="71912"/>
          <exon e_start="71816" e_stop="71714"/>
          <exon e_start="71438" e_stop="71107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTAAGTCAATAATTATAATAAAATCGCGCTATTGGCACGATTATGTTAATGCATCGAATTTTCGTAATTCTAATAATTGTTTAAAATTTGTGCAGAATGAAAGACGAGCAAGCAGGAGAAGTTCCTGTGGCTTTTGTTGTCAGATCAAATGGCTCCACAATTACTGAAGATGAAGTCAAAGAATTCATAACAAAGCAGGTTAGTTTAATTCATTTATTTTCATTAGACGAATTTCATTAAATCAACATTATTTTTTTATTTAGTCGATTGACTATCTAAATTTTATTTTATTGGCGTTGTTCGTTTTTCTAACTTAGTTCCTTCACTTGCCCCGATGTGATAAAATATATTTTGAAAAAAGATTAATAAATTTTGGTCCTTCACTTGATATAATTACTATGTACTTTTAGTAACATTTGTATCATAAAAAAATGGGCTTTTCTAATTTTTGTTATTTTAAATTGATTTTTCAGGTGATATTCTATAAAAGGATAAAGAGGGTATTTTTTGTGGATGTTGTTCCTAAATCTCCATCGGGCAAAATCCTTAGAAAGGACTTGAGAGCTAAATTAGCTGCTGGATATCCAAATTAAATACTACTTCATACTTTAATGGCGATCGAATAACTATAACCAATA-TT-TTTTTTTTTGTTATTGAAAGTTACATATTTTTGTTCTTTGAATTGTATTTGTACGTTAAACCACCTGCCTCTATACGGTTAAAATTAATTAACCAATTTGGCAAAAGGAGAAAAATGTATGTATATTTGACTGTAAGGGACTTATTTTTTTTTTTAAATGTCTCA</genome_strand>
        <mrna_strand>TTC...............................................................................................AATGAAAGACGAGCAAGCAGGAGAAGTTCCTGTGGCTTTTGTTGTCAGATCAAATGGCTCCACAATTACTGAAGATGAAGTCAAAGAATTCATAACAAAGCAG...................................................................................................................................................................................................................................................................................GTGATATTATATAAAAGGATAAAGAGGGTATTTTGTGTGGATGTTGGTCCTAAATCTCCATCGGGCAAAATCCTTAGAAAGGACTTGAGAGCTAAATTAGCTGCTGGATATCCAAATTAAATACTACTTCATACTTTAATGGCGATCGAATAACTATAACCAATATTTGTTTTTTTTTGTTATTGAAAGTTACATATTTTTGTTCTTTGAATTGTATGTGTACGTTAAACCACCTGCCTCTATACGGTTAAAATTAATTAACCAATTTGGCAAAAGGAGAAAAATGTATGTATATTTGACTGTAAGGGACTTATTTTTTTTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224667" ref_strand="+" ref_description="SGN-E224667 [cLEL-27-E5](-)">
      <seq>ctcaatcatcccaatatttcagatgctgctgttgtttcaatgaaagacgagcaagcaggagaagttcctgtggcttttgttgtcagatcaaatggctccacaattactgaagatgaagtcaaagaattcataacaaagcaggtgatattctataaaaggataaagagggtattttttgtggatgttgttcctaaatctccatcgggcaaaatccttagaaaggacttgagagctaaattagctgctggatatccaaattaaatactacttcatactttaatggcgatcgaataactataaccaatatttttttttttgttattgaaagttacatatttttgttctttgaattgtatttgtacgttaaaccacctgcctctatacggttaaaattaattaaccaatttggcaaaaggagaaaaatgtatgtatatttgnctgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72249" stop="70836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71949" g_stop="71912" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71911" i_stop="71817" i_length="95">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71816" g_stop="71714" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="141" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71713" i_stop="71439" i_length="275">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71438" g_stop="71140" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="440" r_length="299" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="443" polyA_stop="459"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E224667" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71949" e_stop="71912"/>
          <exon e_start="71816" e_stop="71714"/>
          <exon e_start="71438" e_stop="71140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATCATCCCAATATTTCAGATGCTGCTGTTGTTTCGTAAGTCAATAATTATAATAAAATCGCGCTATTGGCACGATTATGTTAATGCATCGAATTTTCGTAATTCTAATAATTGTTTAAAATTTGTGCAGAATGAAAGACGAGCAAGCAGGAGAAGTTCCTGTGGCTTTTGTTGTCAGATCAAATGGCTCCACAATTACTGAAGATGAAGTCAAAGAATTCATAACAAAGCAGGTTAGTTTAATTCATTTATTTTCATTAGACGAATTTCATTAAATCAACATTATTTTTTTATTTAGTCGATTGACTATCTAAATTTTATTTTATTGGCGTTGTTCGTTTTTCTAACTTAGTTCCTTCACTTGCCCCGATGTGATAAAATATATTTTGAAAAAAGATTAATAAATTTTGGTCCTTCACTTGATATAATTACTATGTACTTTTAGTAACATTTGTATCATAAAAAAATGGGCTTTTCTAATTTTTGTTATTTTAAATTGATTTTTCAGGTGATATTCTATAAAAGGATAAAGAGGGTATTTTTTGTGGATGTTGTTCCTAAATCTCCATCGGGCAAAATCCTTAGAAAGGACTTGAGAGCTAAATTAGCTGCTGGATATCCAAATTAAATACTACTTCATACTTTAATGGCGATCGAATAACTATAACCAATATTTTTTTTTTTGTTATTGAAAGTTACATATTTTTGTTCTTTGAATTGTATTTGTACGTTAAACCACCTGCCTCTATACGGTTAAAATTAATTAACCAATTTGGCAAAAGGAGAAAAATGTATGTATATTTGACT</genome_strand>
        <mrna_strand>CTCAATCATCCCAATATTTCAGATGCTGCTGTTGTTTC...............................................................................................AATGAAAGACGAGCAAGCAGGAGAAGTTCCTGTGGCTTTTGTTGTCAGATCAAATGGCTCCACAATTACTGAAGATGAAGTCAAAGAATTCATAACAAAGCAG...................................................................................................................................................................................................................................................................................GTGATATTCTATAAAAGGATAAAGAGGGTATTTTTTGTGGATGTTGTTCCTAAATCTCCATCGGGCAAAATCCTTAGAAAGGACTTGAGAGCTAAATTAGCTGCTGGATATCCAAATTAAATACTACTTCATACTTTAATGGCGATCGAATAACTATAACCAATATTTTTTTTTTTGTTATTGAAAGTTACATATTTTTGTTCTTTGAATTGTATTTGTACGTTAAACCACCTGCCTCTATACGGTTAAAATTAATTAACCAATTTGGCAAAAGGAGAAAAATGTATGTATATTTGNCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224591" ref_strand="+" ref_description="SGN-E224591 [cLEL-27-E5](-)">
      <seq>tcaatcatcccaatatttcagatgctgctgttgtttcaatgaaagacgagcaagcaggagaagttcctgtggcttttgttgtcagatcaaatggctccacaattactgaagatgaagtcaaagaattcataacaaagcaggtgatattctataaaaggataaagagggtattttttgtggatgttgttcctaaatctccatcgggcaaaatccttagaaaggacttgagagctaaattagctgctggatatccaaattaaatactacttcatactttaatggcgatcgaataactataaccaatatttttttttttgttattgaaagttacatatttttgttctttgaattgtatttgtacgttaaaccacctgcctctatacggttaaaattaattaaccaatttggcaaaaggagaaaaatgtatgtatatttccctgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72248" stop="70836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71948" g_stop="71912" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71911" i_stop="71817" i_length="95">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71816" g_stop="71714" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="140" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71713" i_stop="71439" i_length="275">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71438" g_stop="71140" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="439" r_length="299" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="442" polyA_stop="458"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E224591" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71948" e_stop="71912"/>
          <exon e_start="71816" e_stop="71714"/>
          <exon e_start="71438" e_stop="71140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCATCCCAATATTTCAGATGCTGCTGTTGTTTCGTAAGTCAATAATTATAATAAAATCGCGCTATTGGCACGATTATGTTAATGCATCGAATTTTCGTAATTCTAATAATTGTTTAAAATTTGTGCAGAATGAAAGACGAGCAAGCAGGAGAAGTTCCTGTGGCTTTTGTTGTCAGATCAAATGGCTCCACAATTACTGAAGATGAAGTCAAAGAATTCATAACAAAGCAGGTTAGTTTAATTCATTTATTTTCATTAGACGAATTTCATTAAATCAACATTATTTTTTTATTTAGTCGATTGACTATCTAAATTTTATTTTATTGGCGTTGTTCGTTTTTCTAACTTAGTTCCTTCACTTGCCCCGATGTGATAAAATATATTTTGAAAAAAGATTAATAAATTTTGGTCCTTCACTTGATATAATTACTATGTACTTTTAGTAACATTTGTATCATAAAAAAATGGGCTTTTCTAATTTTTGTTATTTTAAATTGATTTTTCAGGTGATATTCTATAAAAGGATAAAGAGGGTATTTTTTGTGGATGTTGTTCCTAAATCTCCATCGGGCAAAATCCTTAGAAAGGACTTGAGAGCTAAATTAGCTGCTGGATATCCAAATTAAATACTACTTCATACTTTAATGGCGATCGAATAACTATAACCAATATTTTTTTTTTTGTTATTGAAAGTTACATATTTTTGTTCTTTGAATTGTATTTGTACGTTAAACCACCTGCCTCTATACGGTTAAAATTAATTAACCAATTTGGCAAAAGGAGAAAAATGTATGTATATTTGACT</genome_strand>
        <mrna_strand>TCAATCATCCCAATATTTCAGATGCTGCTGTTGTTTC...............................................................................................AATGAAAGACGAGCAAGCAGGAGAAGTTCCTGTGGCTTTTGTTGTCAGATCAAATGGCTCCACAATTACTGAAGATGAAGTCAAAGAATTCATAACAAAGCAG...................................................................................................................................................................................................................................................................................GTGATATTCTATAAAAGGATAAAGAGGGTATTTTTTGTGGATGTTGTTCCTAAATCTCCATCGGGCAAAATCCTTAGAAAGGACTTGAGAGCTAAATTAGCTGCTGGATATCCAAATTAAATACTACTTCATACTTTAATGGCGATCGAATAACTATAACCAATATTTTTTTTTTTGTTATTGAAAGTTACATATTTTTGTTCTTTGAATTGTATTTGTACGTTAAACCACCTGCCTCTATACGGTTAAAATTAATTAACCAATTTGGCAAAAGGAGAAAAATGTATGTATATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396779" ref_strand="+" ref_description="SGN-E396779 [TUS-43-F24](-)">
      <seq>aggaaccaatctggagagatttgtataagaggcgatcaaattatgaaaggttacctaaatgatccagaggccactacgggaacaatagacaaagaaaggtggttacatacgggcgatattggttatattgacatcgatgatgagcttttcattgtggatcgtttaaaggaattgataaaatacaaaggatttcaagtggctcctgctgaacttgaagcccttctcctcaatcatcccaatatttcagatgctgctgttgtttcaatgaaagacgagcaagcaggagaagttcctgtggcttttgttgtcagatcaaatggctccacaattactgaagatgaagtcaaagaattcataacaaagcaggtgatattctataaaaggataaagagggtattttttgtggatgttgttcctaaatctccatcgggcaaaatccttagaaaggacttgagagctaaattagctgctggatatccaaattaaatactacttcatactttaatggcgatggaataactataaccaatatttttttttttgttattgaaagttacatatttttgttctttgaattgtatttgtacgttaaaccacctgcctctatacggttaaaattaattaaccaatttggcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72885" stop="70857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72585" g_stop="72537" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72536" i_stop="72126" i_length="411">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72125" g_stop="71912" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="263" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71911" i_stop="71817" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71816" g_stop="71714" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="366" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71713" i_stop="71439" i_length="275">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71438" g_stop="71156" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="649" r_length="283" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E396779" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72585" e_stop="72537"/>
          <exon e_start="72125" e_stop="71912"/>
          <exon e_start="71816" e_stop="71714"/>
          <exon e_start="71438" e_stop="71156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAACCAATCTGGAGAGATTTGTATAAGAGGCGATCAAATTATGAAAGGTACGTTATCAAATGAACTATTAGCTGAGTAATTTTTCTATAATGTCGAATCATTATTTGCACAATAGTTTCCCAAATAAAACTTACATTCTTCCACTTTAGCACTTTAATGGGACTCAATATCTTAAATTGGAGCCAAAATATTATAAATGTGCATTTTTATATTTTTAAAATTATTTCCACTATTGATTATATATATTTGGTACAACTAATCCATAAAGTGTATGTCACAACTCACGACAATCACCTCGAGTGATATTGTTGGGCCACTAACCAAAAAATATATATTTAAATCTTTATGTCGTGATGGAACATAACTAATGAGTTTATATGATTTTTTTTTTCTAGATATTGAATTGATATGTAGTTGACTTTGAACTTGAATCAAATTAATATGAATATTGTATACAGGTTACCTAAATGATCCAGAGGCCACTACGGGAACAATAGACAAAGAAAGGTGGTTACATACGGGCGATATTGGTTATATTGACATCGATGATGAGCTTTTCATTGTGGATCGTTTAAAGGAATTGATAAAATACAAAGGATTTCAAGTGGCTCCTGCTGAACTTGAAGCCCTTCTCCTCAATCATCCCAATATTTCAGATGCTGCTGTTGTTTCGTAAGTCAATAATTATAATAAAATCGCGCTATTGGCACGATTATGTTAATGCATCGAATTTTCGTAATTCTAATAATTGTTTAAAATTTGTGCAGAATGAAAGACGAGCAAGCAGGAGAAGTTCCTGTGGCTTTTGTTGTCAGATCAAATGGCTCCACAATTACTGAAGATGAAGTCAAAGAATTCATAACAAAGCAGGTTAGTTTAATTCATTTATTTTCATTAGACGAATTTCATTAAATCAACATTATTTTTTTATTTAGTCGATTGACTATCTAAATTTTATTTTATTGGCGTTGTTCGTTTTTCTAACTTAGTTCCTTCACTTGCCCCGATGTGATAAAATATATTTTGAAAAAAGATTAATAAATTTTGGTCCTTCACTTGATATAATTACTATGTACTTTTAGTAACATTTGTATCATAAAAAAATGGGCTTTTCTAATTTTTGTTATTTTAAATTGATTTTTCAGGTGATATTCTATAAAAGGATAAAGAGGGTATTTTTTGTGGATGTTGTTCCTAAATCTCCATCGGGCAAAATCCTTAGAAAGGACTTGAGAGCTAAATTAGCTGCTGGATATCCAAATTAAATACTACTTCATACTTTAATGGCGATCGAATAACTATAACCAATATTTTTTTTTTTGTTATTGAAAGTTACATATTTTTGTTCTTTGAATTGTATTTGTACGTTAAACCACCTGCCTCTATACGGTTAAAATTAATTAACCAATTTGGCAAAAGGAGAAAAAT</genome_strand>
        <mrna_strand>AGGAACCAATCTGGAGAGATTTGTATAAGAGGCGATCAAATTATGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCTAAATGATCCAGAGGCCACTACGGGAACAATAGACAAAGAAAGGTGGTTACATACGGGCGATATTGGTTATATTGACATCGATGATGAGCTTTTCATTGTGGATCGTTTAAAGGAATTGATAAAATACAAAGGATTTCAAGTGGCTCCTGCTGAACTTGAAGCCCTTCTCCTCAATCATCCCAATATTTCAGATGCTGCTGTTGTTTC...............................................................................................AATGAAAGACGAGCAAGCAGGAGAAGTTCCTGTGGCTTTTGTTGTCAGATCAAATGGCTCCACAATTACTGAAGATGAAGTCAAAGAATTCATAACAAAGCAG...................................................................................................................................................................................................................................................................................GTGATATTCTATAAAAGGATAAAGAGGGTATTTTTTGTGGATGTTGTTCCTAAATCTCCATCGGGCAAAATCCTTAGAAAGGACTTGAGAGCTAAATTAGCTGCTGGATATCCAAATTAAATACTACTTCATACTTTAATGGCGATGGAATAACTATAACCAATATTTTTTTTTTTGTTATTGAAAGTTACATATTTTTGTTCTTTGAATTGTATTTGTACGTTAAACCACCTGCCTCTATACGGTTAAAATTAATTAACCAATTTGGCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226994" ref_strand="+" ref_description="SGN-E226994 [cLED-1-B2](-)">
      <seq>gtggatcgtttaaaggaattgataaaatacaaaggatttcaagtggctcctgctgaacttgaagcccttctcctcaatcatcccaatatttcagatgctgctgttgtttcaatgaaagacgagcaagcaggagaagttcctgtggcttttgttgtcagatcaaatggctccacaattactgaagatgaagtcaaagaattcataacaaagcaggtgatattctataaaaggataaagagggtattttttgtggatgttgttcctaaatctccatcgggcaaaatccttagaaaggacttgagagctaaattagctgctggatatccaaattaaatactacttcatactttaatggcgatcgaataactataaccaatatttttttttttgttattgaaagttacatatttttgttctttgaattgtatttgtacgttaaaccacctgcctctatacggttaaaattaattaaccaatttggcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72321" stop="70857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72021" g_stop="71912" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71911" i_stop="71817" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71816" g_stop="71714" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="213" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71713" i_stop="71439" i_length="275">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71438" g_stop="71157" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="495" r_length="282" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E226994" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72021" e_stop="71912"/>
          <exon e_start="71816" e_stop="71714"/>
          <exon e_start="71438" e_stop="71157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGATCGTTTAAAGGAATTGATAAAATACAAAGGATTTCAAGTGGCTCCTGCTGAACTTGAAGCCCTTCTCCTCAATCATCCCAATATTTCAGATGCTGCTGTTGTTTCGTAAGTCAATAATTATAATAAAATCGCGCTATTGGCACGATTATGTTAATGCATCGAATTTTCGTAATTCTAATAATTGTTTAAAATTTGTGCAGAATGAAAGACGAGCAAGCAGGAGAAGTTCCTGTGGCTTTTGTTGTCAGATCAAATGGCTCCACAATTACTGAAGATGAAGTCAAAGAATTCATAACAAAGCAGGTTAGTTTAATTCATTTATTTTCATTAGACGAATTTCATTAAATCAACATTATTTTTTTATTTAGTCGATTGACTATCTAAATTTTATTTTATTGGCGTTGTTCGTTTTTCTAACTTAGTTCCTTCACTTGCCCCGATGTGATAAAATATATTTTGAAAAAAGATTAATAAATTTTGGTCCTTCACTTGATATAATTACTATGTACTTTTAGTAACATTTGTATCATAAAAAAATGGGCTTTTCTAATTTTTGTTATTTTAAATTGATTTTTCAGGTGATATTCTATAAAAGGATAAAGAGGGTATTTTTTGTGGATGTTGTTCCTAAATCTCCATCGGGCAAAATCCTTAGAAAGGACTTGAGAGCTAAATTAGCTGCTGGATATCCAAATTAAATACTACTTCATACTTTAATGGCGATCGAATAACTATAACCAATATTTTTTTTTTTGTTATTGAAAGTTACATATTTTTGTTCTTTGAATTGTATTTGTACGTTAAACCACCTGCCTCTATACGGTTAAAATTAATTAACCAATTTGGCAAAAGGAGAAAAA</genome_strand>
        <mrna_strand>GTGGATCGTTTAAAGGAATTGATAAAATACAAAGGATTTCAAGTGGCTCCTGCTGAACTTGAAGCCCTTCTCCTCAATCATCCCAATATTTCAGATGCTGCTGTTGTTTC...............................................................................................AATGAAAGACGAGCAAGCAGGAGAAGTTCCTGTGGCTTTTGTTGTCAGATCAAATGGCTCCACAATTACTGAAGATGAAGTCAAAGAATTCATAACAAAGCAG...................................................................................................................................................................................................................................................................................GTGATATTCTATAAAAGGATAAAGAGGGTATTTTTTGTGGATGTTGTTCCTAAATCTCCATCGGGCAAAATCCTTAGAAAGGACTTGAGAGCTAAATTAGCTGCTGGATATCCAAATTAAATACTACTTCATACTTTAATGGCGATCGAATAACTATAACCAATATTTTTTTTTTTGTTATTGAAAGTTACATATTTTTGTTCTTTGAATTGTATTTGTACGTTAAACCACCTGCCTCTATACGGTTAAAATTAATTAACCAATTTGGCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240583" ref_strand="+" ref_description="SGN-E240583 [cLED-21-M22]">
      <seq>tctcctcaatcatcccaatatttcagatgctgctgttgtttcaacgaaagacgagcaagcatgagaagttcctgtggcttttgttgtcagatcaaatggctccacaattactgaagatgaagtcaaagaattcataacaaagcaggtgatattctataaaaggataaagagggtattttctgtggatgttgttcctaaatcttcatcgggcaaaatccttagaaaggacttgagagctaaattagctgctggatatccaaattaaatactacttcatactttaatggcgatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72253" stop="70991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71953" g_stop="71912" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71911" i_stop="71817" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71816" g_stop="71714" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="145" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71713" i_stop="71439" i_length="275">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71438" g_stop="71291" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="293" r_length="148" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E240583" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71953" e_stop="71912"/>
          <exon e_start="71816" e_stop="71714"/>
          <exon e_start="71438" e_stop="71291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCAATCATCCCAATATTTCAGATGCTGCTGTTGTTTCGTAAGTCAATAATTATAATAAAATCGCGCTATTGGCACGATTATGTTAATGCATCGAATTTTCGTAATTCTAATAATTGTTTAAAATTTGTGCAGAATGAAAGACGAGCAAGCAGGAGAAGTTCCTGTGGCTTTTGTTGTCAGATCAAATGGCTCCACAATTACTGAAGATGAAGTCAAAGAATTCATAACAAAGCAGGTTAGTTTAATTCATTTATTTTCATTAGACGAATTTCATTAAATCAACATTATTTTTTTATTTAGTCGATTGACTATCTAAATTTTATTTTATTGGCGTTGTTCGTTTTTCTAACTTAGTTCCTTCACTTGCCCCGATGTGATAAAATATATTTTGAAAAAAGATTAATAAATTTTGGTCCTTCACTTGATATAATTACTATGTACTTTTAGTAACATTTGTATCATAAAAAAATGGGCTTTTCTAATTTTTGTTATTTTAAATTGATTTTTCAGGTGATATTCTATAAAAGGATAAAGAGGGTATTTTTTGTGGATGTTGTTCCTAAATCTCCATCGGGCAAAATCCTTAGAAAGGACTTGAGAGCTAAATTAGCTGCTGGATATCCAAATTAAATACTACTTCATACTTTAATGGCGATCG</genome_strand>
        <mrna_strand>TCTCCTCAATCATCCCAATATTTCAGATGCTGCTGTTGTTTC...............................................................................................AACGAAAGACGAGCAAGCATGAGAAGTTCCTGTGGCTTTTGTTGTCAGATCAAATGGCTCCACAATTACTGAAGATGAAGTCAAAGAATTCATAACAAAGCAG...................................................................................................................................................................................................................................................................................GTGATATTCTATAAAAGGATAAAGAGGGTATTTTCTGTGGATGTTGTTCCTAAATCTTCATCGGGCAAAATCCTTAGAAAGGACTTGAGAGCTAAATTAGCTGCTGGATATCCAAATTAAATACTACTTCATACTTTAATGGCGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396627" ref_strand="+" ref_description="SGN-E396627 [TUS-43-F24]">
      <seq>attatgatttatcatcggtaagaaccgttatgtctggggctgcaccattaggaaaagaacttgaagacactgttcgagccaaatttcctaatgctaaacttggtcaaggttacggaatgacagaagccggaccagtgttggctatgtgcttggcatttgctaaagaacccttcgaaattaaatctggagcatgtgggactgttgttagaaatgctcagatgaaaattgtggatcctgatactggcaaatctctccctaggaaccaatctggagagatttgtataagaggcgatcaaattatgaaaggttacctaaatgatccagaggccactacgggaacaatagacaaagaaaggtggttacatacgggcgatattggttatattgacatcgatgatgagcttttcattgtggatcgtttaaaggaattgataaaatacaaaggatttcaagtggctcctgctgaacttgaagcccttctcctcaatcatcccaatatttcagatgctgctgttgtttcaatgaaagacgagcaagcaggagaagttcctgtggcttttgttgtcagatcaaatggctccacaattactgaagatgaagtcaaagaattcataacaaagcaggtgatattctataaaaggataaagagggtattttttgtggatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73937" stop="71093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73637" g_stop="73531" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73530" i_stop="72736" i_length="795">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72735" g_stop="72537" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="306" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72536" i_stop="72126" i_length="411">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72125" g_stop="71912" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="520" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71911" i_stop="71817" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71816" g_stop="71714" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="623" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71713" i_stop="71439" i_length="275">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71438" g_stop="71393" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="669" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E396627" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73637" e_stop="73531"/>
          <exon e_start="72735" e_stop="72537"/>
          <exon e_start="72125" e_stop="71912"/>
          <exon e_start="71816" e_stop="71714"/>
          <exon e_start="71438" e_stop="71393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGATTTATCATCGGTAAGAACCGTTATGTCTGGGGCTGCACCATTAGGAAAAGAACTTGAAGACACTGTTCGAGCCAAATTTCCTAATGCTAAACTTGGTCAAGTAAGATTCTTATATCGTAGCAACTTCTTAATTAATATATTTTTATTTAAGTATACATTAATTTAGGTTATATATATGATTAGTTAATTGTTGATTTTGATTTGACTTGATCTAAGTTCAGATCTCCACGCACATTGGTGCTTAATTAATTGCTGATTATTTTACACTAATTATAGGGATTAATTAAGCTTGATTTCACATGTTAAGGCTTTTGTTTGAAATTTTCTATTTTTTCCCCCTAGAAATTAGTTGGTAAACGTCTAATCTCAAGTTGCTGAAAAGATCCAATCAATTAAAAAATATTGCAATGAAGCAACCCCACTTATTTTATTTATATATGACATAAAGAATATCTAAACCATCAAATGATTTATAATTTAATAGTTAATAAAATGTAATTATTTATTAAAAAAAAAAAAAACAGTCGTTAAAGCTTAAATTGAGTATCATATTTTTCTGTTCAGTTTGAAAAATCAAGAAATAATTTATCATTTAATTTTTAATTTACCCTTTCATTTACTTTAAACATTTTCAAACATATTTCATTTATTATATTTAGTAAGCCATTCTTTTTGTTACGTTTAAGGCTGTAACAAGTTCGTACAAGATAAGTAATATGTGAAATCACATTTTTGATATTGATATCCCAAGTCATATCTACCAATGAACAATTTTGTCAATTCAATTAAGACACAAATGATATTGATTTTCCTAGTCATATTTTACAACAAAGTAAGGTGACTTGCTTAATATGAGTAATTATTTTGATTGTGATTGTTTTTATTATATGTATAGGGTTACGGAATGACAGAAGCCGGACCAGTGTTGGCTATGTGCTTGGCATTTGCTAAAGAACCCTTCGAAATTAAATCTGGAGCATGTGGGACTGTTGTTAGAAATGCTCAGATGAAAATTGTGGATCCTGATACTGGCAAATCTCTCCCTAGGAACCAATCTGGAGAGATTTGTATAAGAGGCGATCAAATTATGAAAGGTACGTTATCAAATGAACTATTAGCTGAGTAATTTTTCTATAATGTCGAATCATTATTTGCACAATAGTTTCCCAAATAAAACTTACATTCTTCCACTTTAGCACTTTAATGGGACTCAATATCTTAAATTGGAGCCAAAATATTATAAATGTGCATTTTTATATTTTTAAAATTATTTCCACTATTGATTATATATATTTGGTACAACTAATCCATAAAGTGTATGTCACAACTCACGACAATCACCTCGAGTGATATTGTTGGGCCACTAACCAAAAAATATATATTTAAATCTTTATGTCGTGATGGAACATAACTAATGAGTTTATATGATTTTTTTTTTCTAGATATTGAATTGATATGTAGTTGACTTTGAACTTGAATCAAATTAATATGAATATTGTATACAGGTTACCTAAATGATCCAGAGGCCACTACGGGAACAATAGACAAAGAAAGGTGGTTACATACGGGCGATATTGGTTATATTGACATCGATGATGAGCTTTTCATTGTGGATCGTTTAAAGGAATTGATAAAATACAAAGGATTTCAAGTGGCTCCTGCTGAACTTGAAGCCCTTCTCCTCAATCATCCCAATATTTCAGATGCTGCTGTTGTTTCGTAAGTCAATAATTATAATAAAATCGCGCTATTGGCACGATTATGTTAATGCATCGAATTTTCGTAATTCTAATAATTGTTTAAAATTTGTGCAGAATGAAAGACGAGCAAGCAGGAGAAGTTCCTGTGGCTTTTGTTGTCAGATCAAATGGCTCCACAATTACTGAAGATGAAGTCAAAGAATTCATAACAAAGCAGGTTAGTTTAATTCATTTATTTTCATTAGACGAATTTCATTAAATCAACATTATTTTTTTATTTAGTCGATTGACTATCTAAATTTTATTTTATTGGCGTTGTTCGTTTTTCTAACTTAGTTCCTTCACTTGCCCCGATGTGATAAAATATATTTTGAAAAAAGATTAATAAATTTTGGTCCTTCACTTGATATAATTACTATGTACTTTTAGTAACATTTGTATCATAAAAAAATGGGCTTTTCTAATTTTTGTTATTTTAAATTGATTTTTCAGGTGATATTCTATAAAAGGATAAAGAGGGTATTTTTTGTGGATGTTG</genome_strand>
        <mrna_strand>ATTATGATTTATCATCGGTAAGAACCGTTATGTCTGGGGCTGCACCATTAGGAAAAGAACTTGAAGACACTGTTCGAGCCAAATTTCCTAATGCTAAACTTGGTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGGAATGACAGAAGCCGGACCAGTGTTGGCTATGTGCTTGGCATTTGCTAAAGAACCCTTCGAAATTAAATCTGGAGCATGTGGGACTGTTGTTAGAAATGCTCAGATGAAAATTGTGGATCCTGATACTGGCAAATCTCTCCCTAGGAACCAATCTGGAGAGATTTGTATAAGAGGCGATCAAATTATGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCTAAATGATCCAGAGGCCACTACGGGAACAATAGACAAAGAAAGGTGGTTACATACGGGCGATATTGGTTATATTGACATCGATGATGAGCTTTTCATTGTGGATCGTTTAAAGGAATTGATAAAATACAAAGGATTTCAAGTGGCTCCTGCTGAACTTGAAGCCCTTCTCCTCAATCATCCCAATATTTCAGATGCTGCTGTTGTTTC...............................................................................................AATGAAAGACGAGCAAGCAGGAGAAGTTCCTGTGGCTTTTGTTGTCAGATCAAATGGCTCCACAATTACTGAAGATGAAGTCAAAGAATTCATAACAAAGCAG...................................................................................................................................................................................................................................................................................GTGATATTCTATAAAAGGATAAAGAGGGTATTTTTTGTGGATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235341" ref_strand="+" ref_description="SGN-E235341 [cLED-11-D3]">
      <seq>aaaattacaaggtgaccatagggccatttgtgccacctattgttttggctattgctaagagtcctatggttgataattatgatttatcatcggtaagaaccgttatgtctggggctgcaccattaggaaaagaacttgaagacactgttcgagccaaatttcctaatgctaaacttggtcaaggttacggaatgacagaagccggaccagtgttggctatgtgcttggcatttgctaaagaacccttcgaaattaaatctggagcatgtgggactgttgttagaaatgctcagatgaaaattgtggatcctgatactggcaaatctctccctaggaaccaatctggagagatttgtataagaggcgatcaaattatgaaaggttacctaaatgatccagaggccactacgggaacaatagacaaagaaaggtggttacatacgggcgatattggttatattgacatcgatgatgagcttttcattgtggatcgtttaaaggaattgataaaatacaaaggatttcaagtggctcctgctgaacttgaagcccttctcctcaatcatcccaatatttcagatgctgctgttgtttcaatgaaagacgagcaagcaggagaagttcctgtggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74012" stop="71479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73712" g_stop="73531" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73530" i_stop="72736" i_length="795">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72735" g_stop="72537" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="381" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72536" i_stop="72126" i_length="411">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72125" g_stop="71912" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="595" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71911" i_stop="71817" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71816" g_stop="71779" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="633" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E235341" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73712" e_stop="73531"/>
          <exon e_start="72735" e_stop="72537"/>
          <exon e_start="72125" e_stop="71912"/>
          <exon e_start="71816" e_stop="71779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTACAAGGTGACCATAGGGCCATTTGTGCCACCTATTGTTTTGGCTATTGCTAAGAGTCCTATGGTTGATAATTATGATTTATCATCGGTAAGAACCGTTATGTCTGGGGCTGCACCATTAGGAAAAGAACTTGAAGACACTGTTCGAGCCAAATTTCCTAATGCTAAACTTGGTCAAGTAAGATTCTTATATCGTAGCAACTTCTTAATTAATATATTTTTATTTAAGTATACATTAATTTAGGTTATATATATGATTAGTTAATTGTTGATTTTGATTTGACTTGATCTAAGTTCAGATCTCCACGCACATTGGTGCTTAATTAATTGCTGATTATTTTACACTAATTATAGGGATTAATTAAGCTTGATTTCACATGTTAAGGCTTTTGTTTGAAATTTTCTATTTTTTCCCCCTAGAAATTAGTTGGTAAACGTCTAATCTCAAGTTGCTGAAAAGATCCAATCAATTAAAAAATATTGCAATGAAGCAACCCCACTTATTTTATTTATATATGACATAAAGAATATCTAAACCATCAAATGATTTATAATTTAATAGTTAATAAAATGTAATTATTTATTAAAAAAAAAAAAAACAGTCGTTAAAGCTTAAATTGAGTATCATATTTTTCTGTTCAGTTTGAAAAATCAAGAAATAATTTATCATTTAATTTTTAATTTACCCTTTCATTTACTTTAAACATTTTCAAACATATTTCATTTATTATATTTAGTAAGCCATTCTTTTTGTTACGTTTAAGGCTGTAACAAGTTCGTACAAGATAAGTAATATGTGAAATCACATTTTTGATATTGATATCCCAAGTCATATCTACCAATGAACAATTTTGTCAATTCAATTAAGACACAAATGATATTGATTTTCCTAGTCATATTTTACAACAAAGTAAGGTGACTTGCTTAATATGAGTAATTATTTTGATTGTGATTGTTTTTATTATATGTATAGGGTTACGGAATGACAGAAGCCGGACCAGTGTTGGCTATGTGCTTGGCATTTGCTAAAGAACCCTTCGAAATTAAATCTGGAGCATGTGGGACTGTTGTTAGAAATGCTCAGATGAAAATTGTGGATCCTGATACTGGCAAATCTCTCCCTAGGAACCAATCTGGAGAGATTTGTATAAGAGGCGATCAAATTATGAAAGGTACGTTATCAAATGAACTATTAGCTGAGTAATTTTTCTATAATGTCGAATCATTATTTGCACAATAGTTTCCCAAATAAAACTTACATTCTTCCACTTTAGCACTTTAATGGGACTCAATATCTTAAATTGGAGCCAAAATATTATAAATGTGCATTTTTATATTTTTAAAATTATTTCCACTATTGATTATATATATTTGGTACAACTAATCCATAAAGTGTATGTCACAACTCACGACAATCACCTCGAGTGATATTGTTGGGCCACTAACCAAAAAATATATATTTAAATCTTTATGTCGTGATGGAACATAACTAATGAGTTTATATGATTTTTTTTTTCTAGATATTGAATTGATATGTAGTTGACTTTGAACTTGAATCAAATTAATATGAATATTGTATACAGGTTACCTAAATGATCCAGAGGCCACTACGGGAACAATAGACAAAGAAAGGTGGTTACATACGGGCGATATTGGTTATATTGACATCGATGATGAGCTTTTCATTGTGGATCGTTTAAAGGAATTGATAAAATACAAAGGATTTCAAGTGGCTCCTGCTGAACTTGAAGCCCTTCTCCTCAATCATCCCAATATTTCAGATGCTGCTGTTGTTTCGTAAGTCAATAATTATAATAAAATCGCGCTATTGGCACGATTATGTTAATGCATCGAATTTTCGTAATTCTAATAATTGTTTAAAATTTGTGCAGAATGAAAGACGAGCAAGCAGGAGAAGTTCCTGTGGCTT</genome_strand>
        <mrna_strand>AAAATTACAAGGTGACCATAGGGCCATTTGTGCCACCTATTGTTTTGGCTATTGCTAAGAGTCCTATGGTTGATAATTATGATTTATCATCGGTAAGAACCGTTATGTCTGGGGCTGCACCATTAGGAAAAGAACTTGAAGACACTGTTCGAGCCAAATTTCCTAATGCTAAACTTGGTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGGAATGACAGAAGCCGGACCAGTGTTGGCTATGTGCTTGGCATTTGCTAAAGAACCCTTCGAAATTAAATCTGGAGCATGTGGGACTGTTGTTAGAAATGCTCAGATGAAAATTGTGGATCCTGATACTGGCAAATCTCTCCCTAGGAACCAATCTGGAGAGATTTGTATAAGAGGCGATCAAATTATGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCTAAATGATCCAGAGGCCACTACGGGAACAATAGACAAAGAAAGGTGGTTACATACGGGCGATATTGGTTATATTGACATCGATGATGAGCTTTTCATTGTGGATCGTTTAAAGGAATTGATAAAATACAAAGGATTTCAAGTGGCTCCTGCTGAACTTGAAGCCCTTCTCCTCAATCATCCCAATATTTCAGATGCTGCTGTTGTTTC...............................................................................................AATGAAAGACGAGCAAGCAGGAGAAGTTCCTGTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231784" ref_strand="+" ref_description="SGN-E231784 [cLED-7-A3]">
      <seq>aagaaccgttatgtctggggctgcaccattaggaaaagaacttgaagacactgttcgagccaaatttcctaatgctaaacttggtcaaggttacggaatgacagaagccggaccagtgttggctatgtgcttggcatttgctaaagaacccttcgaaattaaatctggagcatgtgggactgttgttagaaatgctcagatgaaaattgtggatcctgatactggcaaatctctccctaggaaccaatctggagagatttgtataagaggcgatcaaattatgaaaggttacctaaatgatccagaggccactacgggaacaatagacaaagaaaggtggttacatacgggcgatattggttatattgacatcgatgatgagcttttcattgtggatcgtttaaaggaattgataaaatacaaaggatttcaagtggctcctgctgaacttgaagcccttctcctcaatcatcccaatatttcagatgctgctgttgtttcaatgaaagacgagcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73918" stop="71612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73618" g_stop="73531" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73530" i_stop="72736" i_length="795">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72735" g_stop="72537" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="287" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72536" i_stop="72126" i_length="411">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72125" g_stop="71912" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="501" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71911" i_stop="71817" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71816" g_stop="71800" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="518" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E231784" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73618" e_stop="73531"/>
          <exon e_start="72735" e_stop="72537"/>
          <exon e_start="72125" e_stop="71912"/>
          <exon e_start="71816" e_stop="71800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACCGTTATGTCTGGGGCTGCACCATTAGGAAAAGAACTTGAAGACACTGTTCGAGCCAAATTTCCTAATGCTAAACTTGGTCAAGTAAGATTCTTATATCGTAGCAACTTCTTAATTAATATATTTTTATTTAAGTATACATTAATTTAGGTTATATATATGATTAGTTAATTGTTGATTTTGATTTGACTTGATCTAAGTTCAGATCTCCACGCACATTGGTGCTTAATTAATTGCTGATTATTTTACACTAATTATAGGGATTAATTAAGCTTGATTTCACATGTTAAGGCTTTTGTTTGAAATTTTCTATTTTTTCCCCCTAGAAATTAGTTGGTAAACGTCTAATCTCAAGTTGCTGAAAAGATCCAATCAATTAAAAAATATTGCAATGAAGCAACCCCACTTATTTTATTTATATATGACATAAAGAATATCTAAACCATCAAATGATTTATAATTTAATAGTTAATAAAATGTAATTATTTATTAAAAAAAAAAAAAACAGTCGTTAAAGCTTAAATTGAGTATCATATTTTTCTGTTCAGTTTGAAAAATCAAGAAATAATTTATCATTTAATTTTTAATTTACCCTTTCATTTACTTTAAACATTTTCAAACATATTTCATTTATTATATTTAGTAAGCCATTCTTTTTGTTACGTTTAAGGCTGTAACAAGTTCGTACAAGATAAGTAATATGTGAAATCACATTTTTGATATTGATATCCCAAGTCATATCTACCAATGAACAATTTTGTCAATTCAATTAAGACACAAATGATATTGATTTTCCTAGTCATATTTTACAACAAAGTAAGGTGACTTGCTTAATATGAGTAATTATTTTGATTGTGATTGTTTTTATTATATGTATAGGGTTACGGAATGACAGAAGCCGGACCAGTGTTGGCTATGTGCTTGGCATTTGCTAAAGAACCCTTCGAAATTAAATCTGGAGCATGTGGGACTGTTGTTAGAAATGCTCAGATGAAAATTGTGGATCCTGATACTGGCAAATCTCTCCCTAGGAACCAATCTGGAGAGATTTGTATAAGAGGCGATCAAATTATGAAAGGTACGTTATCAAATGAACTATTAGCTGAGTAATTTTTCTATAATGTCGAATCATTATTTGCACAATAGTTTCCCAAATAAAACTTACATTCTTCCACTTTAGCACTTTAATGGGACTCAATATCTTAAATTGGAGCCAAAATATTATAAATGTGCATTTTTATATTTTTAAAATTATTTCCACTATTGATTATATATATTTGGTACAACTAATCCATAAAGTGTATGTCACAACTCACGACAATCACCTCGAGTGATATTGTTGGGCCACTAACCAAAAAATATATATTTAAATCTTTATGTCGTGATGGAACATAACTAATGAGTTTATATGATTTTTTTTTTCTAGATATTGAATTGATATGTAGTTGACTTTGAACTTGAATCAAATTAATATGAATATTGTATACAGGTTACCTAAATGATCCAGAGGCCACTACGGGAACAATAGACAAAGAAAGGTGGTTACATACGGGCGATATTGGTTATATTGACATCGATGATGAGCTTTTCATTGTGGATCGTTTAAAGGAATTGATAAAATACAAAGGATTTCAAGTGGCTCCTGCTGAACTTGAAGCCCTTCTCCTCAATCATCCCAATATTTCAGATGCTGCTGTTGTTTCGTAAGTCAATAATTATAATAAAATCGCGCTATTGGCACGATTATGTTAATGCATCGAATTTTCGTAATTCTAATAATTGTTTAAAATTTGTGCAGAATGAAAGACGAGCAAG</genome_strand>
        <mrna_strand>AAGAACCGTTATGTCTGGGGCTGCACCATTAGGAAAAGAACTTGAAGACACTGTTCGAGCCAAATTTCCTAATGCTAAACTTGGTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGGAATGACAGAAGCCGGACCAGTGTTGGCTATGTGCTTGGCATTTGCTAAAGAACCCTTCGAAATTAAATCTGGAGCATGTGGGACTGTTGTTAGAAATGCTCAGATGAAAATTGTGGATCCTGATACTGGCAAATCTCTCCCTAGGAACCAATCTGGAGAGATTTGTATAAGAGGCGATCAAATTATGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCTAAATGATCCAGAGGCCACTACGGGAACAATAGACAAAGAAAGGTGGTTACATACGGGCGATATTGGTTATATTGACATCGATGATGAGCTTTTCATTGTGGATCGTTTAAAGGAATTGATAAAATACAAAGGATTTCAAGTGGCTCCTGCTGAACTTGAAGCCCTTCTCCTCAATCATCCCAATATTTCAGATGCTGCTGTTGTTTC...............................................................................................AATGAAAGACGAGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226993" ref_strand="+" ref_description="SGN-E226993 [cLED-1-B2]">
      <seq>ttatgatttatcatcggtaagaaccgttatgtctggggctgcaccattaggaaaagaacttgaagacactgttcgagccaaatttcctaannctaaacttggtcaaggttacggaatgacagaagccggaccagtgttggctatgtgcttggcatttgctaaagaacccttcgaaattaaatctggagcatgtgggactgttgttagaaatgctcagatgaaaattgtggatcctgatactggcaaatctctccctaggaaccaatctggagagatttgtataagaggcgatcaaattatgaaaggttacctaaatgatccagaggccactacgggaacaatagacaaagaaaggtggttacatacgggcgatattggttatatggacatcgatgatgagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73936" stop="71728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73636" g_stop="73531" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73530" i_stop="72736" i_length="795">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72735" g_stop="72537" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="305" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72536" i_stop="72126" i_length="411">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72125" g_stop="72028" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="403" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E226993" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73636" e_stop="73531"/>
          <exon e_start="72735" e_stop="72537"/>
          <exon e_start="72125" e_stop="72028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGATTTATCATCGGTAAGAACCGTTATGTCTGGGGCTGCACCATTAGGAAAAGAACTTGAAGACACTGTTCGAGCCAAATTTCCTAATGCTAAACTTGGTCAAGTAAGATTCTTATATCGTAGCAACTTCTTAATTAATATATTTTTATTTAAGTATACATTAATTTAGGTTATATATATGATTAGTTAATTGTTGATTTTGATTTGACTTGATCTAAGTTCAGATCTCCACGCACATTGGTGCTTAATTAATTGCTGATTATTTTACACTAATTATAGGGATTAATTAAGCTTGATTTCACATGTTAAGGCTTTTGTTTGAAATTTTCTATTTTTTCCCCCTAGAAATTAGTTGGTAAACGTCTAATCTCAAGTTGCTGAAAAGATCCAATCAATTAAAAAATATTGCAATGAAGCAACCCCACTTATTTTATTTATATATGACATAAAGAATATCTAAACCATCAAATGATTTATAATTTAATAGTTAATAAAATGTAATTATTTATTAAAAAAAAAAAAAACAGTCGTTAAAGCTTAAATTGAGTATCATATTTTTCTGTTCAGTTTGAAAAATCAAGAAATAATTTATCATTTAATTTTTAATTTACCCTTTCATTTACTTTAAACATTTTCAAACATATTTCATTTATTATATTTAGTAAGCCATTCTTTTTGTTACGTTTAAGGCTGTAACAAGTTCGTACAAGATAAGTAATATGTGAAATCACATTTTTGATATTGATATCCCAAGTCATATCTACCAATGAACAATTTTGTCAATTCAATTAAGACACAAATGATATTGATTTTCCTAGTCATATTTTACAACAAAGTAAGGTGACTTGCTTAATATGAGTAATTATTTTGATTGTGATTGTTTTTATTATATGTATAGGGTTACGGAATGACAGAAGCCGGACCAGTGTTGGCTATGTGCTTGGCATTTGCTAAAGAACCCTTCGAAATTAAATCTGGAGCATGTGGGACTGTTGTTAGAAATGCTCAGATGAAAATTGTGGATCCTGATACTGGCAAATCTCTCCCTAGGAACCAATCTGGAGAGATTTGTATAAGAGGCGATCAAATTATGAAAGGTACGTTATCAAATGAACTATTAGCTGAGTAATTTTTCTATAATGTCGAATCATTATTTGCACAATAGTTTCCCAAATAAAACTTACATTCTTCCACTTTAGCACTTTAATGGGACTCAATATCTTAAATTGGAGCCAAAATATTATAAATGTGCATTTTTATATTTTTAAAATTATTTCCACTATTGATTATATATATTTGGTACAACTAATCCATAAAGTGTATGTCACAACTCACGACAATCACCTCGAGTGATATTGTTGGGCCACTAACCAAAAAATATATATTTAAATCTTTATGTCGTGATGGAACATAACTAATGAGTTTATATGATTTTTTTTTTCTAGATATTGAATTGATATGTAGTTGACTTTGAACTTGAATCAAATTAATATGAATATTGTATACAGGTTACCTAAATGATCCAGAGGCCACTACGGGAACAATAGACAAAGAAAGGTGGTTACATACGGGCGATATTGGTTATATTGACATCGATGATGAGCTT</genome_strand>
        <mrna_strand>TTATGATTTATCATCGGTAAGAACCGTTATGTCTGGGGCTGCACCATTAGGAAAAGAACTTGAAGACACTGTTCGAGCCAAATTTCCTAANNCTAAACTTGGTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGGAATGACAGAAGCCGGACCAGTGTTGGCTATGTGCTTGGCATTTGCTAAAGAACCCTTCGAAATTAAATCTGGAGCATGTGGGACTGTTGTTAGAAATGCTCAGATGAAAATTGTGGATCCTGATACTGGCAAATCTCTCCCTAGGAACCAATCTGGAGAGATTTGTATAAGAGGCGATCAAATTATGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCTAAATGATCCAGAGGCCACTACGGGAACAATAGACAAAGAAAGGTGGTTACATACGGGCGATATTGGTTATATGGACATCGATGATGAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239778" ref_strand="+" ref_description="SGN-E239778 [cLED-29-I5]">
      <seq>ttggaattaatacaaaattacaaggtgaccatagggccatttgtgccacctattgttttggctattgctaagagtcctatggttgataattatgatttatcatcggtaagaaccgttatgtctggggctgcaccattaggaaaagaacttgaagacactgttcgagccaaatttcctaatgctaaacttggtcaaggttacggaatgacagaagccggaccagtgttggctatgtgcttggcatttgctaaagaacccttcgaaattaaatctggagcatgtgggactgttgttagaaatgctcagatgaaaattgtggatcctgatactggcaaatctctccctaggaaccaatctggagagatttgtataagaggcgatcaaattatgaaaggttacctaaatgatccagaggccactacgggaacaatagacaaagaaaggtggttacatacgggcgatattggttatattgacatcgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74025" stop="71734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73725" g_stop="73531" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73530" i_stop="72736" i_length="795">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72735" g_stop="72537" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="394" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72536" i_stop="72126" i_length="411">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72125" g_stop="72034" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="486" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E239778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73725" e_stop="73531"/>
          <exon e_start="72735" e_stop="72537"/>
          <exon e_start="72125" e_stop="72034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAATTAATACAAAATTACAAGGTGACCATAGGGCCATTTGTGCCACCTATTGTTTTGGCTATTGCTAAGAGTCCTATGGTTGATAATTATGATTTATCATCGGTAAGAACCGTTATGTCTGGGGCTGCACCATTAGGAAAAGAACTTGAAGACACTGTTCGAGCCAAATTTCCTAATGCTAAACTTGGTCAAGTAAGATTCTTATATCGTAGCAACTTCTTAATTAATATATTTTTATTTAAGTATACATTAATTTAGGTTATATATATGATTAGTTAATTGTTGATTTTGATTTGACTTGATCTAAGTTCAGATCTCCACGCACATTGGTGCTTAATTAATTGCTGATTATTTTACACTAATTATAGGGATTAATTAAGCTTGATTTCACATGTTAAGGCTTTTGTTTGAAATTTTCTATTTTTTCCCCCTAGAAATTAGTTGGTAAACGTCTAATCTCAAGTTGCTGAAAAGATCCAATCAATTAAAAAATATTGCAATGAAGCAACCCCACTTATTTTATTTATATATGACATAAAGAATATCTAAACCATCAAATGATTTATAATTTAATAGTTAATAAAATGTAATTATTTATTAAAAAAAAAAAAAACAGTCGTTAAAGCTTAAATTGAGTATCATATTTTTCTGTTCAGTTTGAAAAATCAAGAAATAATTTATCATTTAATTTTTAATTTACCCTTTCATTTACTTTAAACATTTTCAAACATATTTCATTTATTATATTTAGTAAGCCATTCTTTTTGTTACGTTTAAGGCTGTAACAAGTTCGTACAAGATAAGTAATATGTGAAATCACATTTTTGATATTGATATCCCAAGTCATATCTACCAATGAACAATTTTGTCAATTCAATTAAGACACAAATGATATTGATTTTCCTAGTCATATTTTACAACAAAGTAAGGTGACTTGCTTAATATGAGTAATTATTTTGATTGTGATTGTTTTTATTATATGTATAGGGTTACGGAATGACAGAAGCCGGACCAGTGTTGGCTATGTGCTTGGCATTTGCTAAAGAACCCTTCGAAATTAAATCTGGAGCATGTGGGACTGTTGTTAGAAATGCTCAGATGAAAATTGTGGATCCTGATACTGGCAAATCTCTCCCTAGGAACCAATCTGGAGAGATTTGTATAAGAGGCGATCAAATTATGAAAGGTACGTTATCAAATGAACTATTAGCTGAGTAATTTTTCTATAATGTCGAATCATTATTTGCACAATAGTTTCCCAAATAAAACTTACATTCTTCCACTTTAGCACTTTAATGGGACTCAATATCTTAAATTGGAGCCAAAATATTATAAATGTGCATTTTTATATTTTTAAAATTATTTCCACTATTGATTATATATATTTGGTACAACTAATCCATAAAGTGTATGTCACAACTCACGACAATCACCTCGAGTGATATTGTTGGGCCACTAACCAAAAAATATATATTTAAATCTTTATGTCGTGATGGAACATAACTAATGAGTTTATATGATTTTTTTTTTCTAGATATTGAATTGATATGTAGTTGACTTTGAACTTGAATCAAATTAATATGAATATTGTATACAGGTTACCTAAATGATCCAGAGGCCACTACGGGAACAATAGACAAAGAAAGGTGGTTACATACGGGCGATATTGGTTATATTGACATCGATGAT</genome_strand>
        <mrna_strand>TTGGAATTAATACAAAATTACAAGGTGACCATAGGGCCATTTGTGCCACCTATTGTTTTGGCTATTGCTAAGAGTCCTATGGTTGATAATTATGATTTATCATCGGTAAGAACCGTTATGTCTGGGGCTGCACCATTAGGAAAAGAACTTGAAGACACTGTTCGAGCCAAATTTCCTAATGCTAAACTTGGTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGGAATGACAGAAGCCGGACCAGTGTTGGCTATGTGCTTGGCATTTGCTAAAGAACCCTTCGAAATTAAATCTGGAGCATGTGGGACTGTTGTTAGAAATGCTCAGATGAAAATTGTGGATCCTGATACTGGCAAATCTCTCCCTAGGAACCAATCTGGAGAGATTTGTATAAGAGGCGATCAAATTATGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCTAAATGATCCAGAGGCCACTACGGGAACAATAGACAAAGAAAGGTGGTTACATACGGGCGATATTGGTTATATTGACATCGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204488" ref_strand="+" ref_description="SGN-E204488 [cLEC-24-O1]">
      <seq>aaaattacaaggcgaccatagggccatttgtgccacctattgttttggctattgctaagagtcctatggttgataattatgatttatcatcggtaagaaccgttatgtctggggctgcaccatttggaaaagaacttgaagacactgttcgagccaaatttcctaatgctaaacttggtcaaggttacggaatgacagaagccggaccagtgttgggtatgtgcttggcatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74012" stop="72383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73712" g_stop="73531" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73530" i_stop="72736" i_length="795">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72735" g_stop="72683" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="235" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E204488" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73712" e_stop="73531"/>
          <exon e_start="72735" e_stop="72683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTACAAGGTGACCATAGGGCCATTTGTGCCACCTATTGTTTTGGCTATTGCTAAGAGTCCTATGGTTGATAATTATGATTTATCATCGGTAAGAACCGTTATGTCTGGGGCTGCACCATTAGGAAAAGAACTTGAAGACACTGTTCGAGCCAAATTTCCTAATGCTAAACTTGGTCAAGTAAGATTCTTATATCGTAGCAACTTCTTAATTAATATATTTTTATTTAAGTATACATTAATTTAGGTTATATATATGATTAGTTAATTGTTGATTTTGATTTGACTTGATCTAAGTTCAGATCTCCACGCACATTGGTGCTTAATTAATTGCTGATTATTTTACACTAATTATAGGGATTAATTAAGCTTGATTTCACATGTTAAGGCTTTTGTTTGAAATTTTCTATTTTTTCCCCCTAGAAATTAGTTGGTAAACGTCTAATCTCAAGTTGCTGAAAAGATCCAATCAATTAAAAAATATTGCAATGAAGCAACCCCACTTATTTTATTTATATATGACATAAAGAATATCTAAACCATCAAATGATTTATAATTTAATAGTTAATAAAATGTAATTATTTATTAAAAAAAAAAAAAACAGTCGTTAAAGCTTAAATTGAGTATCATATTTTTCTGTTCAGTTTGAAAAATCAAGAAATAATTTATCATTTAATTTTTAATTTACCCTTTCATTTACTTTAAACATTTTCAAACATATTTCATTTATTATATTTAGTAAGCCATTCTTTTTGTTACGTTTAAGGCTGTAACAAGTTCGTACAAGATAAGTAATATGTGAAATCACATTTTTGATATTGATATCCCAAGTCATATCTACCAATGAACAATTTTGTCAATTCAATTAAGACACAAATGATATTGATTTTCCTAGTCATATTTTACAACAAAGTAAGGTGACTTGCTTAATATGAGTAATTATTTTGATTGTGATTGTTTTTATTATATGTATAGGGTTACGGAATGACAGAAGCCGGACCAGTGTTGGCTATGTGCTTGGCATTTGC</genome_strand>
        <mrna_strand>AAAATTACAAGGCGACCATAGGGCCATTTGTGCCACCTATTGTTTTGGCTATTGCTAAGAGTCCTATGGTTGATAATTATGATTTATCATCGGTAAGAACCGTTATGTCTGGGGCTGCACCATTTGGAAAAGAACTTGAAGACACTGTTCGAGCCAAATTTCCTAATGCTAAACTTGGTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGGAATGACAGAAGCCGGACCAGTGTTGGGTATGTGCTTGGCATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599710" ref_strand="+" ref_description="SGN-E599710 [52704]">
      <seq>aatttgtgtacgccttccttggtgcgtcgtacctcggcgcaatttcgacgatggctaatcctttgtttacgtctgctgaagttgtgaagcaagccaaggcttctaatgctaagatcattgtcacgcaagcatgccatgtgaacaaggtgaaggattatgcgttggagaatgatgtgaagattgtgtgtattgactctgcaccggagggttgtgttcacttctgcgagttgattcaggctgatgagcatgatatccctgaggtggaaatccagcccgacgatgtggtggcgttgccttattcctcaggaacaaccggtctacctaaaggtgtcatgttgacacacaagggactagtcacaagtgtggcacaacaagttgatggtgaaaatccaaacttgtacatccatagtgaggatgtgttgctttgtgtgttgcccttgtttcatatatattctctcaattccattttgctatgtggattaagagttggagcagcaattttgattatgcaaaaatttgatattgttccattcttggaattaatacaaaattacaaggtgacaatagggccatttgtgccacctattgttttggccattgctaagagtcctttggttgataattatgatttatcatcagtaagaaccgttatgtctggggctgcaccattaggaaaagaacttgaagacactgttcgtgccaaaattcctaatgctaaacttggtcaacgctatggtatgacagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75009" stop="73224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74709" g_stop="74450" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74449" i_stop="73999" i_length="451">
            <donor d_prob="0.946" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73998" g_stop="73531" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="728" r_length="468" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E599710" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74709" e_stop="74450"/>
          <exon e_start="73998" e_stop="73531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTGAACAAGGTGAAGGATTATGCATTGGAGAATGGTGTGAAGATCGTGTGTATCGATCCGGCCCCTGACGGTTGTGTTCACTTTTCTGAGTTGATTCAGGCCGATGAGCATGATATCCCTGAGGTAATACTGCGTGATCATCATATCTAAAAGTTTAAGTTAACGGAGAAAACGTATTTCTTTTAGTTATGTAATTATGTTATGTTGAGACTTTTTACTCTCCTTAGATGCAAACTTGGCTTTTTTTCACTGGTCAAACACGTGAAGATGTTTTTTTTTGCTTTTTTGGGTGATGATCATGGTGAATAAACCGAGGATTGTGCAGATTTGGTATATATCATGTTAAAATTGTATGACCAAGCTAGTATTAATTAGAGTGAACACATATAGATTATTAATTGCTTAATTATATAGTACTAAGTGGACAACATGCCTTATTTTGGGGGTTGATTCTTTTTTACTAGTCAAACTATGTGTGAATATTCTCTACTTTTTAGGTTCTATTGAGATTTTAAATCTATTTTAATACTATTTTGAGTTGTACGATCATTTTAACGGAGAGATGTCTGAACAGGTGAAAATCCAACCCGATGATGTGGTGGCGTTGCCGTATTCCTCCGGAACAACGGGTTTACCTAAAGGTGTCATGTTGACACACAAGGGACTAGTCACAAGTGTGGCACAACAAGTTGATGGTGAAAATCCAAACTTGTACATCCATAGTGAGGATGTATTGCTTTGTGTGTTGCCTTTGTTTCATATATATTCCCTCAATTCCGTTTTGCTATGTGGATTAAGAGTTGGAGCAGCAATTTTGATTATGCAAAAATTTGACATTGTTCCATTCTTGGAATTAATACAAAATTACAAGGTGACCATAGGGCCATTTGTGCCACCTATTGTTTTGGCTATTGCTAAGAGTCCTATGGTTGATAATTATGATTTATCATCGGTAAGAACCGTTATGTCTGGGGCTGCACCATTAGGAAAAGAACTTGAAGACACTGTTCGAGCCAAATTTCCTAATGCTAAACTTGGTCAA</genome_strand>
        <mrna_strand>AATTTGTGTACGCCTTCCTTGGTGCGTCGTACCTCGGCGCAATTTCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCCAAGGCTTCTAATGCTAAGATCATTGTCACGCAAGCATGCCATGTGAACAAGGTGAAGGATTATGCGTTGGAGAATGATGTGAAGATTGTGTGTATTGACTCTGCACCGGAGGGTTGTGTTCACTTCTGCGAGTTGATTCAGGCTGATGAGCATGATATCCCTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAATCCAGCCCGACGATGTGGTGGCGTTGCCTTATTCCTCAGGAACAACCGGTCTACCTAAAGGTGTCATGTTGACACACAAGGGACTAGTCACAAGTGTGGCACAACAAGTTGATGGTGAAAATCCAAACTTGTACATCCATAGTGAGGATGTGTTGCTTTGTGTGTTGCCCTTGTTTCATATATATTCTCTCAATTCCATTTTGCTATGTGGATTAAGAGTTGGAGCAGCAATTTTGATTATGCAAAAATTTGATATTGTTCCATTCTTGGAATTAATACAAAATTACAAGGTGACAATAGGGCCATTTGTGCCACCTATTGTTTTGGCCATTGCTAAGAGTCCTTTGGTTGATAATTATGATTTATCATCAGTAAGAACCGTTATGTCTGGGGCTGCACCATTAGGAAAAGAACTTGAAGACACTGTTCGTGCCAAAATTCCTAATGCTAAACTTGGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325047" ref_strand="+" ref_description="SGN-E325047 [cTOC-13-F17]">
      <seq>ttccgttacactcgtattgtttcgaaaatatttcggaattcaaatcgcgcccgtgtttaatcgacggggcgaataatcaaatttatacatacgctgatgttgagctcaattcgagaaaagttgctgctggtcttcataaacaatttgggatccaacaaaaggatactattatgatcttattgccaaattcaccagaatttgtgtatgtcttccttggtgcgtcgtacctcggcgcgatatcgacgatggctaatcctttgtttacgtctgctgaagttgtgaagcaagctaaggcttctaatgctaagatcattgtcactcaatcgtgtcatgtgaacaaggtgaaggattatgcattggagaatggtgtgaagatcgtgtgtatcgatccggcccctgacggttgtgttcacttttctgagttgattcaagccgatgagcatgatatccctgaggtgaaaatccaacccgatgatgtggtggcgttgccgtattcctccggaacaacgggtttacctaaaggtgtcatgttgacacacaagggactagtcacaagtgtggcacaacaagttgatggtgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75204" stop="73571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74904" g_stop="74450" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74449" i_stop="73999" i_length="451">
            <donor d_prob="0.946" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73998" g_stop="73871" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="583" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E325047" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74904" e_stop="74450"/>
          <exon e_start="73998" e_stop="73871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTGAACAAGGTGAAGGATTATGCATTGGAGAATGGTGTGAAGATCGTGTGTATCGATCCGGCCCCTGACGGTTGTGTTCACTTTTCTGAGTTGATTCAGGCCGATGAGCATGATATCCCTGAGGTAATACTGCGTGATCATCATATCTAAAAGTTTAAGTTAACGGAGAAAACGTATTTCTTTTAGTTATGTAATTATGTTATGTTGAGACTTTTTACTCTCCTTAGATGCAAACTTGGCTTTTTTTCACTGGTCAAACACGTGAAGATGTTTTTTTTTGCTTTTTTGGGTGATGATCATGGTGAATAAACCGAGGATTGTGCAGATTTGGTATATATCATGTTAAAATTGTATGACCAAGCTAGTATTAATTAGAGTGAACACATATAGATTATTAATTGCTTAATTATATAGTACTAAGTGGACAACATGCCTTATTTTGGGGGTTGATTCTTTTTTACTAGTCAAACTATGTGTGAATATTCTCTACTTTTTAGGTTCTATTGAGATTTTAAATCTATTTTAATACTATTTTGAGTTGTACGATCATTTTAACGGAGAGATGTCTGAACAGGTGAAAATCCAACCCGATGATGTGGTGGCGTTGCCGTATTCCTCCGGAACAACGGGTTTACCTAAAGGTGTCATGTTGACACACAAGGGACTAGTCACAAGTGTGGCACAACAAGTTGATGGTGAAAA</genome_strand>
        <mrna_strand>TTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTGAACAAGGTGAAGGATTATGCATTGGAGAATGGTGTGAAGATCGTGTGTATCGATCCGGCCCCTGACGGTTGTGTTCACTTTTCTGAGTTGATTCAAGCCGATGAGCATGATATCCCTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAATCCAACCCGATGATGTGGTGGCGTTGCCGTATTCCTCCGGAACAACGGGTTTACCTAAAGGTGTCATGTTGACACACAAGGGACTAGTCACAAGTGTGGCACAACAAGTTGATGGTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730354" ref_strand="+" ref_description="SGN-E730354 [LA23DE02]">
      <seq>ttgctcttagcgagcccaaaatttcaaactatagtactacattttttttttattcttcttctcgtcaagtctcaaaagctaaatcaaaatgacaaatgcaacgatggagaacgaaacaaaacaagacgatataatttttcgatcgaagctccctgatatttacatccctaatcatcttccgttacactcgtattgtttcgaaaatatttcggaattcaaatcgcgcccgggtttaatcgacggggcgaataatcaaatttatacatacgctgatgttgagctcaattcgagaaaagttgctgctggtcttcataaacaatttgggatccaacaaaaggatactattatgatcttattgccaaattcaccagaatttgtgtatgtcttccttggtgcgtcgtacctcggcgcgatatcgacgatggctaatcctttgtttacgtctgctgaagttgtgaagcaagctaaggcttctaatgctaagatcattgtcactcaatcgtgtcatgtgaacaaggtgaaggattatgcattggagaatggtgtgaagatcgtgtgtatcgatccggcccctgacggttgtgttcacttttctgagttgattcaggccgatgagcatgatatccctgaggtgaaaatccaacccgatgatgtggtggcgttgccgtattcctccggaacaacgggtttacctaaaggtgtcatgttgacacacaagggactagtcacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75380" stop="73599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75080" g_stop="74450" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74449" i_stop="73999" i_length="451">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73998" g_stop="73899" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="731" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E730354" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75080" e_stop="74450"/>
          <exon e_start="73998" e_stop="73899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACATTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTGAACAAGGTGAAGGATTATGCATTGGAGAATGGTGTGAAGATCGTGTGTATCGATCCGGCCCCTGACGGTTGTGTTCACTTTTCTGAGTTGATTCAGGCCGATGAGCATGATATCCCTGAGGTAATACTGCGTGATCATCATATCTAAAAGTTTAAGTTAACGGAGAAAACGTATTTCTTTTAGTTATGTAATTATGTTATGTTGAGACTTTTTACTCTCCTTAGATGCAAACTTGGCTTTTTTTCACTGGTCAAACACGTGAAGATGTTTTTTTTTGCTTTTTTGGGTGATGATCATGGTGAATAAACCGAGGATTGTGCAGATTTGGTATATATCATGTTAAAATTGTATGACCAAGCTAGTATTAATTAGAGTGAACACATATAGATTATTAATTGCTTAATTATATAGTACTAAGTGGACAACATGCCTTATTTTGGGGGTTGATTCTTTTTTACTAGTCAAACTATGTGTGAATATTCTCTACTTTTTAGGTTCTATTGAGATTTTAAATCTATTTTAATACTATTTTGAGTTGTACGATCATTTTAACGGAGAGATGTCTGAACAGGTGAAAATCCAACCCGATGATGTGGTGGCGTTGCCGTATTCCTCCGGAACAACGGGTTTACCTAAAGGTGTCATGTTGACACACAAGGGACTAGTCACAA</genome_strand>
        <mrna_strand>TTGCTCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACATTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGGGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTGAACAAGGTGAAGGATTATGCATTGGAGAATGGTGTGAAGATCGTGTGTATCGATCCGGCCCCTGACGGTTGTGTTCACTTTTCTGAGTTGATTCAGGCCGATGAGCATGATATCCCTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAATCCAACCCGATGATGTGGTGGCGTTGCCGTATTCCTCCGGAACAACGGGTTTACCTAAAGGTGTCATGTTGACACACAAGGGACTAGTCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210855" ref_strand="+" ref_description="SGN-E210855 [cLEC-68-N14]">
      <seq>ttctttattgctcttagcgagcccaaaatttcaaactatagtactacatttttttttttattcttcttctcgtcaagtctcaaaagctaaatcaaaatgacaaatgcaacgatggagaacgaaacaaaacaagacgatataatttttcgatcgaagctccctgatatttacatccctaatcatcttccgttacactcgtattgtttcgaaaatatttcggaattcaaatcgcgcccgtgtttaatcgacggggcgaataatcaaatttatacatacgctgatgttgagctcaattcgagaaaagttgctgctggtcttcataaacaatttgggatccaacaaaaggatactattatgatcttattgccaaattcaccagaatttgtgtatgtcttccttggtgcgtcgtacctcggcgcgatatcgacgatggctaatcctttgtttacgtctgctgaagttgtgaagcaagctaaggcttctaatgctaagatcattgtcactcaatcgtgtcatgtgaacaaggtgaaggattatgcattggagaatggtgtgaagatcgtgtgtatcgatccggcccctgacggttgtgttcacttttctgagttgattcaggccgatgagcatgatatccctgaggtgaaaatccaacccgatgatgtggtggcgttgccgtattcctccggaacacgggtttacctaaaggtgtcatgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75387" stop="73620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75087" g_stop="74450" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74449" i_stop="73999" i_length="451">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73998" g_stop="73920" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="717" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E210855" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75087" e_stop="74450"/>
          <exon e_start="73998" e_stop="73920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTATTGCTCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACA-TTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTGAACAAGGTGAAGGATTATGCATTGGAGAATGGTGTGAAGATCGTGTGTATCGATCCGGCCCCTGACGGTTGTGTTCACTTTTCTGAGTTGATTCAGGCCGATGAGCATGATATCCCTGAGGTAATACTGCGTGATCATCATATCTAAAAGTTTAAGTTAACGGAGAAAACGTATTTCTTTTAGTTATGTAATTATGTTATGTTGAGACTTTTTACTCTCCTTAGATGCAAACTTGGCTTTTTTTCACTGGTCAAACACGTGAAGATGTTTTTTTTTGCTTTTTTGGGTGATGATCATGGTGAATAAACCGAGGATTGTGCAGATTTGGTATATATCATGTTAAAATTGTATGACCAAGCTAGTATTAATTAGAGTGAACACATATAGATTATTAATTGCTTAATTATATAGTACTAAGTGGACAACATGCCTTATTTTGGGGGTTGATTCTTTTTTACTAGTCAAACTATGTGTGAATATTCTCTACTTTTTAGGTTCTATTGAGATTTTAAATCTATTTTAATACTATTTTGAGTTGTACGATCATTTTAACGGAGAGATGTCTGAACAGGTGAAAATCCAACCCGATGATGTGGTGGCGTTGCCGTATTCCTCCGGAACAACGGGTTTACCTAAAGGTGTCATGTTGA</genome_strand>
        <mrna_strand>TTCTTTATTGCTCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACATTTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTGAACAAGGTGAAGGATTATGCATTGGAGAATGGTGTGAAGATCGTGTGTATCGATCCGGCCCCTGACGGTTGTGTTCACTTTTCTGAGTTGATTCAGGCCGATGAGCATGATATCCCTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAATCCAACCCGATGATGTGGTGGCGTTGCCGTATTCCTCCGGAAC-ACGGGTTTACCTAAAGGTGTCATGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561129" ref_strand="+" ref_description="SGN-E561129 [17073]">
      <seq>cttttctttattgctcttaacgtgcccaaaatttcaaactatagtactactttttttttttcttcttctcatcaagtctcaaaagctaagcaaaatgacgaatataacgatggagaacgaaacaaaacaaggcgatataatttttcgatcgaagctccctgatatttacatcccgaatcatcttccgttacactcatattgtttcgaaaacatttcggaatttaaatcgcgcccgtgtttaatcgacggggcgaataatcaaatttatacgtacgctgatgtagagctcaattcgagaaaagttgcagctggtcttcataagcaatttgggatccaacaaaaggatacaattatgatcttattgccaaattcgccagaatttgtgtacgccttccttggtgcgtcgtacctcgggcgcgatttcgacgatggctaatcctttgtttacgtctgctgaaagttgtgaagcaagctaaggcttctaatgctaagatcattgtcacgcaagcgtgccatgtgaaacaaggtgaaggattatgcattggagaatgatgtgaagattgtgtgtattgactcttgcaccggagggttgtgtcacttctccgagtttgattcaggctgatgagcatgatatccctcaggtggaaaatccaacccgacgatgtggtgnctttgcttattctcaggaaccaaccggtctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75349" stop="74148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75090" g_stop="74450" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E561129" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75090" e_stop="74450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTTATTGCTCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACATTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTC-GGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTG-AAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTG-AACAAGGTGAAGGATTATGCATTGGAGAATGGTGTGAAGATCGTGTGTATCGA-TCCGGCCCCTGACGGTTGTGTTCACTTTTCTGAG-TTGATTCAGGCCGATGAGCATGATATCCCTGAG</genome_strand>
        <mrna_strand>CTTTTCTTTATTGCTCTTAACGTGCCCAAAATTTCAAACTATAGTACTAC--TTTTTTTTT-TTCTTCTTCTCATCAAGTCTCAAAAGCT-AAGCAAAATGACGAATATAACGATGGAGAACGAAACAAAACAAGGCGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCGAATCATCTTCCGTTACACTCATATTGTTTCGAAAACATTTCGGAATTTAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACGTACGCTGATGTAGAGCTCAATTCGAGAAAAGTTGCAGCTGGTCTTCATAAGCAATTTGGGATCCAACAAAAGGATACAATTATGATCTTATTGCCAAATTCGCCAGAATTTGTGTACGCCTTCCTTGGTGCGTCGTACCTCGGGCGCGATTTCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACGCAAGCGTGCCATGTGAAACAAGGTGAAGGATTATGCATTGGAGAATGATGTGAAGATTGTGTGTATTGACTCTTGCACCGGAGGGTTGTG-TCACTTCTCCGAGTTTGATTCAGGCTGATGAGCATGATATCCCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213790" ref_strand="+" ref_description="SGN-E213790 [cLEC-76-O7]">
      <seq>attcaaatcgcgcccgtgtttaatcgacggggcgaataatcaaatttatacatacgctgatgttgagctcaattcgagaaaagttgctgctggtcttcataaacaatttgggatccaacaaaaggatactattatgatcttattgccaaattcaccagaatttgtgtatgtcttccttggtgcgtcgtacctcggcgcgatatcgacgatggctaatcctttgtttacgtctgctgaagttgtgaagcaagctaaaggttctaatggtaagaacattggcactccatcctggcatgggaaccaagggaaagaatatgcattggaaaatggtgggaagaacctggggatccattccggccctgaacggtggggtcacctttctgaagtgaatccaggccaagaacatgatattcctgaagggaaaatcccacccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75167" stop="74140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74867" g_stop="74450" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E213790" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74867" e_stop="74450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTGAACAAGGTGAAGGATTATGCATTGGAGAATGGTGTGAAGATCGTGTGTATCGATCCGGCCCCTGACGGTTGTGTTCACTTTTCTGAGTTGATTCAGGCCGATGAGCATGATATCCCTGAG</genome_strand>
        <mrna_strand>ATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAAGGTTCTAATGGTAAGAACATTGGCACTCCATCCTGGCATGGGAACCAAGGGAAAGAATATGCATTGGAAAATGGTGGGAAGAACCTGGGGATCCATTCCGGCCCTGAACGGTGGGGTCACCTTTCTGAAGTGAATCCAGGCCAAGAACATGATATTCCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301054" ref_strand="+" ref_description="SGN-E301054 [cLEW-22-D11]">
      <seq>ttctttattgctcttagcgagcccaaaatttcaaactatagtactacattttttttttattcttcttctcgtcaagtctcaaaagctaaatcaaaatgacaaatgcaacgatggagaacgaaacaaaacaagacgatataatttttcgatcgaagctccctgatatttacatccctaatcatcttccgttacactcgtattgtttcgaaaatatttcggaattcaaatcgcgcccgtgtttaatcgacggggcgaataatcaaatttatacatacgctgatgttgagctcaattcgagaaaagttgctgctggtcttcataaacaatttgggatccaacaaaaggatactattatgatcttattgccaaattcaccagaatttgtgtatgtcttccttggtgcgtcgtacctcggcgcgatatcgacgatggctaatcctttgtttacgtctgctgaagttgtgaagcaagctaaggcttctaatgctaagatcattgtcactcaatcgtgtcatgtgaacaaggtgaaggattatgcattggagaatggtgtgaagatcgtgtgtatcgatccggcccctgacggttgtgttcacttttctgagttgattcaggccgatgagcatgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75387" stop="74157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75087" g_stop="74457" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E301054" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75087" e_stop="74457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTATTGCTCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACATTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTGAACAAGGTGAAGGATTATGCATTGGAGAATGGTGTGAAGATCGTGTGTATCGATCCGGCCCCTGACGGTTGTGTTCACTTTTCTGAGTTGATTCAGGCCGATGAGCATGATAT</genome_strand>
        <mrna_strand>TTCTTTATTGCTCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACATTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTGAACAAGGTGAAGGATTATGCATTGGAGAATGGTGTGAAGATCGTGTGTATCGATCCGGCCCCTGACGGTTGTGTTCACTTTTCTGAGTTGATTCAGGCCGATGAGCATGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301047" ref_strand="+" ref_description="SGN-E301047 [cLEW-22-O12]">
      <seq>aaaagtcttcaacactttttctttattgctcttagcgagcccaaaatttcaaactatagtactacattttttttttattcttcttctcgtcaagtctcaaaagctaaatcaaaatgacaaatgcaacgatggagaacgaaacaaaacaagacgatgtaatttttcgatcgaagctccctgatatttacatccctaatcatcttccgttacactcgtattgtttcgaaaatatttcggaattcaaatcgcgcccgtgtttaatcgacggggcgaataatcaaatttatacatacgctgatgttgagctcaattcgagaaaagttgctgctggtcttcataaacaatttgggatccaacaaaaggatactattatgatcttattgccaaattcaccagaatttgtgtatgtcttccttggtgcgtcgtacctcggcgcgatatcgacgatggctaatcctttgtttacgtctgctgaagttgtgaagcaagctaaggcttctaatgctaagatcattgtcactcaatcgtgtcatgtgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75405" stop="74267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75105" g_stop="74567" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E301047" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75105" e_stop="74567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTCTTCAACACTTTTTCTTTATTGCTCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACATTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTGAAC</genome_strand>
        <mrna_strand>AAAAGTCTTCAACACTTTTTCTTTATTGCTCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACATTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATGTAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310570" ref_strand="+" ref_description="SGN-E310570 [cLEZ-19-B12]">
      <seq>aagtcttcaacactttttctttattgctcttagcgagcccaaaatttcaaactatagtactacattttttttttattcttcttctcgtcaagtctcaaaagctaaatcaaaatgacaaatgcaacgatggagaacgaaacaaaacaagacgatataatttttcgatcgaagctccctgatatttacatccctaatcatcttccgttacactcgtattgtttcgaaaatatttcggaattcaaatcgcgcccgtgtttaatcgacggggcgaataatcaaatttatacatacgctgatgttgagctcaattcgagaaaagttgctgctggtcttcataaacaatttgggatccaacaaaaggatactattatgatcttattgccaaattcaccagaatttgtgtatgtcttccttggtgcgtcgtacctcggcgcgatatcgacgatggctaatcctttgtttacgtctgctgaagttgtgaagcaagctaaggcttctaatgctaagatcattgtcactcaatcgtgtcatgtgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75403" stop="74267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75103" g_stop="74567" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E310570" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75103" e_stop="74567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCTTCAACACTTTTTCTTTATTGCTCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACATTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTGAAC</genome_strand>
        <mrna_strand>AAGTCTTCAACACTTTTTCTTTATTGCTCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACATTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302979" ref_strand="+" ref_description="SGN-E302979 [cLEW-26-E17]">
      <seq>tcttagcgagcccaaaatttcaaactatagtactacattttttttttattcttcttctcgtcaagtctcaaaagctaaatcaaaatgacaaatgcaacgatggagaacgaaacaaaacaagacgatataatttttcgatcgaagctccctgatatttacatccctaatcatcttccgttacactcgtattgtttcgaaaatatttcggaattcaaatcgcgcccgtgtttaatcgacggggcgaataatcaaatttatacatacgctgatgttgagctcaattcgagaaaagttgctgctggtcttcataaacaatttgggatccaacaaaaggatactattatgatcttattgccaaattcaccagaatttgtgtatgtcttccttggtgcgtcgtacctcggcgcgatatcgacgatggctaatcctttgtttacgtctgctgaagttgtgaagcaagctaaggcttctaatgctaagatcattgtcactcaatcgtgtcatgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75376" stop="74268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75076" g_stop="74568" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E302979" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75076" e_stop="74568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACATTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTGAA</genome_strand>
        <mrna_strand>TCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACATTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325096" ref_strand="+" ref_description="SGN-E325096 [cTOC-13-N20]">
      <seq>caacactttttctttattgctcttagcgagcccaaaatttcaaactatagtactacattttttttttattcttcttctcgtcaagtctcaaaagctaaatcaaaatgacaaatgcaacgatggagaacgaaacaaaacaagacgatataatttttcgatcgaagctccctgatatttacatccctaatcatcttccgttacactcgtattgtttcgaaaatatttcggaattcaaatcgcgcccgtgtttaatcgacggggcgaataatcaaatttatacatacgctgatgttgagctcaattcgagaaaagttgctgctggtcttcataaacaatttgggatccaacaaaaggatactattatgatcttattgccaaattcaccagaatttgtgtatgtcttccttggtgcgtcgtacctcggcgcgatatcgacgatggctaatcctttgtttacgtctgctgaagttgtgaagcaagctaaggcttctaatgctaagatcattgtcactcaatcgtgtcatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75396" stop="74270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75096" g_stop="74570" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E325096" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75096" e_stop="74570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACTTTTTCTTTATTGCTCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACATTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTG</genome_strand>
        <mrna_strand>CAACACTTTTTCTTTATTGCTCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACATTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725627" ref_strand="+" ref_description="SGN-E725627 [LA04BD07]">
      <seq>cactttttctttattgctcttagcgagcccaaaatttcaaactatagtactacattttttttttattcttcttctcgtcaagtctcaaaagctaaatcaaaatgacaaatgcaacgatggagaacgaaacaaaacaagacgatataatttttcgatcgaagctccctgatatttacatccctaatcatcttccgttacactcgtattgtttcgaaaatatttcggaattcaaatcgcgcccgtgtttaatcgacggggcgaataatcaaatttatacatacgctgatgttgagctcaattcgagaaaagttgctgctggtcttcataaacaatttgggatccaacaaaaggatactattatgatctttattgccaaattcaccagaatttgtgtatgtcttccttggtgcgtcgtacctcggcgcgatatcgacgatggctaatcctttgtttacgtctgctgaagttgtgaagcaagctaaggcttctaatgctaagatcattgtcacttcatcgtgtcatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75393" stop="74270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75093" g_stop="74570" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E725627" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75093" e_stop="74570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTTTCTTTATTGCTCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACATTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATC-TTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTG</genome_strand>
        <mrna_strand>CACTTTTTCTTTATTGCTCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACATTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTTCATCGTGTCATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400798" ref_strand="+" ref_description="SGN-E400798 [PPC-2-M11]">
      <seq>cttcaacactttttctttattgctcttaacgtgcccaaaatttcaaactatagtactacttttttttttcttcttctcatcaagtctcaaaagctaagcaaaatgacgaatataacgatggagaacgaaacaaaacaaggcgatataatttttcgatcgaagctccctgatatttacatcccgaatcatcttccgttacactcatattgtttcgaaaacatttcggaatttaaatcgcgcccgtgtttaatcgacggggcgaataatcaaatttatacgtacgctgatgttgagctcaattcgagaaaagttgcagctggtcttcataagcaatttgggatccaacaaaaggatacaattatgatcttattgccaaattcgccagaatttgtgtacgccttccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75399" stop="74389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75099" g_stop="74689" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E400798" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75099" e_stop="74689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAACACTTTTTCTTTATTGCTCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACATTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTG</genome_strand>
        <mrna_strand>CTTCAACACTTTTTCTTTATTGCTCTTAACGTGCCCAAAATTTCAAACTATAGTACTAC---TTTTTTTT-TTCTTCTTCTCATCAAGTCTCAAAAGCT-AAGCAAAATGACGAATATAACGATGGAGAACGAAACAAAACAAGGCGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCGAATCATCTTCCGTTACACTCATATTGTTTCGAAAACATTTCGGAATTTAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACGTACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCAGCTGGTCTTCATAAGCAATTTGGGATCCAACAAAAGGATACAATTATGATCTTATTGCCAAATTCGCCAGAATTTGTGTACGCCTTCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471650" ref_strand="+" ref_description="SGN-E471650 [cSTB-24-D4]">
      <seq>ctttttctttattgctcttaacgtgcccaaaatttcaaactatagtactacttttttttacttcttctcatcaagtctcaaaagctaagcaaaatgacgaatataacgatggagaacgaaacaaaacaaggcgatataatttttcgatcgaagctccctgatatttacatcccgaatcatcttccgttacactcatattgtttcgaaaacatttcggaatttaaatcgcgcccgtgtttaatcgacggggcgaataatcaaatttatacgtacgctgatgttgagctcaattcgagaaaagttgcagctggtcttcataagcaatttgggatccaacaaaaggatacaattatgatcttattgccaaattcgccagaatttgtgtacgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75391" stop="74395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75091" g_stop="74695" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E471650" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75091" e_stop="74695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCTTTATTGCTCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACATTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCT</genome_strand>
        <mrna_strand>CTTTTTCTTTATTGCTCTTAACGTGCCCAAAATTTCAAACTATAGTACTAC---TTTTTTTTA--CTTCTTCTCATCAAGTCTCAAAAGCT-AAGCAAAATGACGAATATAACGATGGAGAACGAAACAAAACAAGGCGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCGAATCATCTTCCGTTACACTCATATTGTTTCGAAAACATTTCGGAATTTAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACGTACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCAGCTGGTCTTCATAAGCAATTTGGGATCCAACAAAAGGATACAATTATGATCTTATTGCCAAATTCGCCAGAATTTGTGTACGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204913" ref_strand="+" ref_description="SGN-E204913 [cLEC-14-N8]">
      <seq>ttcaacactttttctttattgctcttagcgagcccaaaatttcaaactatagtactacatttttttttattcttcttctcgtcaagtctcaaaagctaaatcaaaatgacaaatgcaacgatggagaacgaaacaaaacaagacgatataatttttcgatcgaagctccctgatatttacatccctaatcatcttccgttacactcgtattgtttcgaaaatatttcggaattcaaatcgcgcccgtgtttaatcgacggggcgaataatcaaatttatacatacgctgatgttgagctcaattcgagaaaagttgctgctggtcttcataaacaatttgggatccaacaaaaggatactattatgatctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75398" stop="74426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75098" g_stop="74726" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E204913" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75098" e_stop="74726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACACTTTTTCTTTATTGCTCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACATTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTA</genome_strand>
        <mrna_strand>TTCAACACTTTTTCTTTATTGCTCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACA-TTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200959" ref_strand="+" ref_description="SGN-E200959 [cLEC-5-E13]">
      <seq>ttttttattcttcttctcgtcaagtctcaaaagctaaatcaaaatgacaaatgcaacgatggagaacgaaacaaaacaagacgatataatttttcgatcgaagctccctgatatttacatccctaatcatcttccgttacactcgtattgtttcgaaaatatttcggaattcaaatcgcgcccgtgtttaatcgacggggcgaataatcaaatttatacatacgctgatgttgagctcaattcgagaaaagttgctgctggtcttcataaacaatttgggatccaacaaaaggatactattatgatctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75335" stop="74426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75035" g_stop="74726" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E200959" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75035" e_stop="74726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTA</genome_strand>
        <mrna_strand>TTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471736" ref_strand="+" ref_description="SGN-E471736 [cSTB-25-G2]">
      <seq>ctttattgctcttaacgtgcccaaaatttcaaaccatagtactactttttttttttttcgttctcatcaagtctcaaaagctaagcaaatgacaaatataacaatggagaaggaaacaaaacaaggcgatataatttttcgatcgaaactccctgatatttacatccctaatcatcttccgttacactcatattgtttcgaaaacatttcggaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75346" stop="74565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75085" g_stop="74865" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E471736" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>221</cumulative_length_of_scored_exons>
        <coverage percentage="1.023" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75085" e_stop="74865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATTGCTCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACATTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATT</genome_strand>
        <mrna_strand>CTTTATTGCTCTTAACGTGCCCAAAATTTCAAACCATAGTACTAC-TTTTTTTTTT-TT-TCGTTCTCATCAAGTCTCAAAAGCT-AAGC-AAATGACAAATATAACAATGGAGAAGGAAACAAAACAAGGCGATATAATTTTTCGATCGAAACTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCATATTGTTTCGAAAACATTTCGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687985" ref_strand="+" ref_description="SGN-E687985 [T3_tus_81_P05]">
      <seq>ctttcttcgtgtgcatcccaaccttctccggctaccctaaagtcaccgttgcctgaacgcaggttattcaaattttgttagagtgctgctacaacagtttggatacttatatttctgatttccgtaatggctgcgagaatccttgcaaacataattattttgggttctggaataatggcaagggcctttgcccaggcatatcgccaagctctcacaaatgcatcaaaaaatggtgttgctcaagaagcagtacaaaacattagaagagcaagcaaaactatgacagaggtggaggctaggcaagtccttggggttgcagagcattcatcatgggaagacgtgttgcagaaatatgacaacttgtttgagagtaatgctaaaaatggaagtttttatctacaatcaaaagttcatagagcgaaggaatgcttagaatctctttaccgaagtaaagcagagggcccaaattagttctttgaagttcctgcagcattgcagctagagacattctgggctcttgtaaggagtatcttcagtagagggtaattgctttctaccatcagatggtctcctgcaatgttacatacatattcgatcctcaattttggcccgttggagagaagcacttaaattaatcattcgtgtagtttgcatcactccgccttttctgtcattttgcttagtagcacgcttcattattatttcatgcttttgtatgggtaccacataacttgatggaagaagggcgtgaaattgaaaaattttggaatgcnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87623" stop="81787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87323" g_stop="87262" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87261" i_stop="86365" i_length="897">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86364" g_stop="86298" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="129" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86297" i_stop="83245" i_length="3053">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83244" g_stop="83157" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="217" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83156" i_stop="82745" i_length="412">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82744" g_stop="82614" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="348" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82613" i_stop="82510" i_length="104">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82509" g_stop="82089" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="770" r_length="422" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="775" polyA_stop="816"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E687985" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87323" e_stop="87262"/>
          <exon e_start="86364" e_stop="86298"/>
          <exon e_start="83244" e_stop="83157"/>
          <exon e_start="82744" e_stop="82614"/>
          <exon e_start="82509" e_stop="82089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTTCGTGTGCATCCCAACCTTCTCCGGCTACCCTAAAGTCACCGTTGCCTGAACGCAGGTTTAGTTTTAATTCTCTCGTTACTGTAATTTTCTTATCTCCTGCAACAAGTTTGAATTTCACACTATGCAAATTGGTGTACCGATTCATTCTGATTCCTGTTATGTAATGTTTTTTAACTGCTGCAACTCTTTATTTAGCTGTATGTTGGTAAAAATCCCATATTTTAGGTAGGAAACGAAGTTGCTACCGTGAAGTATTCAACGATTATTTGGCAACCATAGTAATTTAGCTGCCTGCCAGTAGGTAGTTCTAGTTTTATTCTGAAAAAGGGAGTAGGTATCTCTATTCTGGTAAGCTATTTTTATGTTGCTTTTTGTTTTGTTCATTTTTGTATTTGTGTTATTAGTTTTTTAAAAAAATTTAAGGAAGACAAAAATTGCATGTTTGGTACCTAGTTTTAGGGAACGTGCGTGGGCTTAATACCTAATTTTAACATTTACATCTGGTTGTAATGTTGAAAGCTTTCGAAGGGAGAAATTCATGCCTTTTGAGGATGTTAGTTTTTTTAGGTTTAAAGCCTGTTTTTGCCCGTTTTATTGTGAATACAACTCATCAATTGGCATCAAATTTTTTGTATGTTATAATAAGAAAAGAAGAGGTACAGACGTTAGAAAACTACGTTGCCAAGAATGTGGTGATTTTGCCTAGTGAGAACTGTTTCCAGCAGGTTATTCTAGTTTTCTTTCTCAGTGGACAATAGCAAAATAGTTTCTTTTATTATTTTCAAATAGTACAATCGTATATGTACAGTGAAACAATGAAAGTAGTAGCAGCGTGTATTTCATATTTCATGCTTTTAACCTCTTTAAATGTAGATATAAACTGATTTTCCTGTTTGCATACTATATTTTGTTTTTACACTGATTTATTCAAAGATGCTTGGTCTTATTGTAGGTTATTCAAATTTTGTTAGAGTGCTGCTACAACAGTTTGGATACTTATATTTCTGATTTCCGTAATGGTAAGTACAATATCAAACTTCCCTCCAATATTCTCCTTCAGATTATCGTGTCTAACTTGCCCTATCTATTTTCTAACCACTTGTTTGAATTCTATTAATAGTTTGTTTAAAATTTCCTACGTGAAGTGAGTTTTTCTTTTGGGGAATCTTGAAGCTGATTGTCTGACTTGATTCATTTTTCTTTCTTTCTCGATTTGGATGGAATCTGGAAATTTAGTAAAAATAGAAACATCAAAAAATGCATGTGGTGGAAGTTGCTACATATTATTTTATTTTATTGGGTGGTGGTGGAGGAGATAGAAGACTCTTGGCTTTATGGTGCGGTTGGTACCAGACGACTTCACACAATCTTTACTTATGTTTCTTGAAACAGAAAGGAAGAAGGACAAACATTAGAAATCATATTGAAGCTCAGCTCAGCTCAGTGTTCTCGACATATAATTAGTAGCAAATAAAAACGGAATGGTTGGATGACTAAGCATGTCACTTCACATTTTAAGATACTGAAATTGATTGTAAGAAAATAATTGAGATGAAGATTGAAGAGGTGAAAGAGATACACCTATATATGATGAAGGAGACTGTAGGTTTCTTTGATTTGTAAAGAGGTTTTGCATTTGCCTTAACATTCTATATTTTTGTAGTATTACCACCACCAAGTATGCCTTAGTCCATTGTTAGTAAGTCAGGGATAAAGTCCTCATGGATAAGCGTTTGCCATTTAAAATCATCTCAGGCTAACATTTTGTCAGTATTAGCAAATTCCCTGTTAACTTTAGGAAATCCCAACCTTAATTTACAACTTATGTAAACAAGTCATGGTTTCTAGTGGACATGTTTAACCTAAGCCCAAAACTTCTTTACTATGTATATTGGTTGCATTGTTTTTTGCCTATAACATTGATAAATTCTACCCTGAACGCAATGTGCTCATGCTGGTAAGAGGAGTTAGAACACGTATAGTGATGGTGAAATAAGTTTAGGGTGCTGGACTCTTGACTTGATTTGGTGCTTAAATTGAGTGTTGCTGACATGATTTGAGGCTGTCAGCAAATTTGCTGATAATACTCAGCCAAATGTTTGTAGCATTTTCTTTTGGCATGAAATGATGTGTTATTCTGGCTCAGAGTGTTGATGCCAATCTTCCATCAAGGAGGAGATCTTGATTCAGTTTGCTAATGCATGAGTTCTTCTGAGTTCTGAATACCAAAATAGGAACTCTGATTGTTCTTTGCCTTTTATTTTCATTTCATTTTCATCTTTCTGGTTTGTTGATTTATTTAGGTAAATGACATGATCAACCTCCCTTAACAGAATGAAATGAAAGGTTAATTGGATGGATTCGCCTGAGCTTTAGGTAGACAGGATTGTAGTGCGTACATGCAGAAAATTTAAATGTATAGACTTGGTCTTCCGGGATAGAAATGTAGCTTATAGAAATAAAATAAGATGATAAAAAGGAGTGAAATGATCCATGCCATGGGAAATACCCCACCAAAGTAAAAAGATAAGTATGAAGGATTTTGAGATGAGTACTGTCACATGGGAGCGATAAGATGAGTGTCATAAAAATTATGAATGTGTAGATGGATGTGTCGCCATACAAATATTTAGACAATACTATAAATGATCACTTCGGACGTAGGATGCGAGTAACACATGAATAATAGATAAGAAAATACTTTTTGATATGATTTGGCGATATCCTTTAAAGACTTCCAAATTCACTGGTCCATATGTATGATACTTTGCTGATTGCAAGTGTTCTTGAAACGTGAAGATAGACTAAAATCACGTTAAAGGGTGTAGTCTCAAAAGATCTATGATCTCTCAAATTTCATGTATTTAGACACAATGAAAGTAAAAGATCATTTTAAGCAATAGAGCAATACCAACTAAATGGGATTAAGGTTTAGAGGTTGTTGGTACCTCTGCATTAAGTTAGATGTTTGTTAGGATTGTTTTTAGTTTGATAAGCAATTGGTTTGTCACTGTATGGGTAGGTGTGAGAAACAGAGAAAATTCGTTTTAGAGAATTCCTTATTTATCTTAAAGACAAATTAGTGAGTGTTGGAATGATATAAGCATAAGCAGAGCAGAATGGATATAGAGGATTTATATAAGCCTAATATAGCTGAGTTTTCCTAGTTTGGAGTTTTTGTGTAGTAATTGTTGTATGAACTCACTCTATGTTATCACTTATCAGTATATTGCGAGCCTACAGACACTGAAAAATATACATCGAAGTAACATATATTAAATTTCATTTCCATCCTATCAGCACCCCCTCCTCCAAGGCTCTAAGAGAACGGAGATTGACCCTAGATTAGAGAAAAAGATATGCTGAATGTAGACTTGAGGCAGAATCTTCTTGAGGTGAAGCAATTATGACCATTTCTTGATAAAAGAAAATTAGTATCATATTTCAATAGAAGATGCATGCATTTGAATGGTTCATGTTTTTAAACATAAATAAGCATGCCTTTAATTATATTTTTTTAACTAAACGTATAACATCTATGTTCTATAAGCATATCATGTAAATGGAATTCTAAAAGATAGCCTCAACTGCTTTTCCAAGCTCCATTTTAGCCTGCAAAATCTTCCAGAATGTGACACTGGTTTCAACTTCGTGTCTCTTTTTTTTAAAAAATAATCCCGGTGTTTGGGCTAGCTCGCACACAACTCGACAAATTCGCGGGTTACCTGTCCCCACCTCCCACCAACAGCATGGACCAGGTAACTTTGTCTATCAAGGCAAGAACGGATGAGAAGATATCACCTAATGATTTGTCTCTGGGAATTGAACCTCGTACCTCATGTTGCTCAACCCCTTTCATTGACAACTAGGCCACACCCTTGGGTGCTTCGACTTCTAGTCTTTCTTTGTATAAGGAAATGGGAAGCCCTCAGAAATTAGTCTGTAGTCTAGAAGCAGCTATAGATTTTTCATACACGTCTCTATTCTTGGTTGGCTAATATAATATTAGAAGTATCTATTTTACACAAAGGGTGCTTGTTACTTAACCCCTCTCATTACTTTCTCATTGCAGGCTGCGAGAATCCTTGCAAACATAATTATTTTGGGTTCTGGAATAATGGCAAGGGCCTTTGCCCAGGCATATCGCCAAGCTCTCACAAGTAAGTTTTTGTTGACGTACACCCTTGTAATCCTTTCCTTCCATAAGAAAACTTGGAATTTTAACTACTGGAGGTGTTTTTTTTCTTTGTTTGGGGGGAGGGGAAAATAAAAATTTGCAGTTTTCTGTGGCACTTGCTTTTGAAATAAAAACACGATTTTTCCTGAGGAGAAGTGTAATTGTGAATTTTGGCCAGATAATGTTGCACAAAACCATTTTGATTCCTGCAAGTTACAGTTCTCCTAGATAGGAAAACAACAGTTCTTGAAGTAACAATGTCCCTAGATTTCAAAACAAAATATATAGTATGTGATAGGTTAATACCCCATTTGTTGATGCACTTGAAGCTTTATCTGCGTACTCCTTGCAACCTTGCTTGGGTTGATAATCAAGTTGTGCTTTGTTAATTGTAGATGCATCAAAAAATGGTGTTGCTCAAGAAGCAGTACAAAACATTAGAAGAGCAAGCAAAACTATGACAGAGGTGGAGGCTAGGCAAGTCCTTGGGGTTGCAGAGCATTCATCATGGGAAGACGTGTTGCAGGTTTGTCTTAGGTGTTTTTATGTGTGATCGTTTTCCCTATGGGGTTTAATGCATTGAATTGACACTTGAAAGTTGTTAATTCGTTTCTTCATCATTTCTTGCAGAAATATGACAACTTGTTTGAGAGTAATGCTAAAAATGGAAGTTTTTATCTACAATCAAAAGTTCATAGAGCGAAGGAATGCTTAGAATCTCTTTACCGAAGTAAAGCAGAGGGCCCAAATTAGTTCTTTGAAGTTCCTGCAGCATTGCAGCTAGAGACATTCTGGGCTCTTGTAAGGAGTATCTTCAGTAGAGGGTAATTGCTTTCTACCATCAGATGGTCTCCTGCAATGTTACATACATATTCGATCCTCAATTTTGGCCCGTTGGAGAGAAGCACTTAAATTAATCATTCGTGTAGTTTGCATCACTCCGCCTTTTCTGTCATTTTGCTTAGTAGCACGCTTCATTATTATTTCATGCTTTTGTATGGTTACCACATAACTTGATGGAAGAGGGGCGTGAAATTGAAAAA-TTTGGAAT</genome_strand>
        <mrna_strand>CTTTCTTCGTGTGCATCCCAACCTTCTCCGGCTACCCTAAAGTCACCGTTGCCTGAACGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCAAATTTTGTTAGAGTGCTGCTACAACAGTTTGGATACTTATATTTCTGATTTCCGTAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGAGAATCCTTGCAAACATAATTATTTTGGGTTCTGGAATAATGGCAAGGGCCTTTGCCCAGGCATATCGCCAAGCTCTCACAA............................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATCAAAAAATGGTGTTGCTCAAGAAGCAGTACAAAACATTAGAAGAGCAAGCAAAACTATGACAGAGGTGGAGGCTAGGCAAGTCCTTGGGGTTGCAGAGCATTCATCATGGGAAGACGTGTTGCAG........................................................................................................AAATATGACAACTTGTTTGAGAGTAATGCTAAAAATGGAAGTTTTTATCTACAATCAAAAGTTCATAGAGCGAAGGAATGCTTAGAATCTCTTTACCGAAGTAAAGCAGAGGGCCCAAATTAGTTCTTTGAAGTTCCTGCAGCATTGCAGCTAGAGACATTCTGGGCTCTTGTAAGGAGTATCTTCAGTAGAGGGTAATTGCTTTCTACCATCAGATGGTCTCCTGCAATGTTACATACATATTCGATCCTCAATTTTGGCCCGTTGGAGAGAAGCACTTAAATTAATCATTCGTGTAGTTTGCATCACTCCGCCTTTTCTGTCATTTTGCTTAGTAGCACGCTTCATTATTATTTCATGCTTTTGTATGGGTACCACATAACTTGATGGAAGAAGGGCGTGAAATTGAAAAATTTTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589211" ref_strand="-" ref_description="SGN-E589211 [42781]">
      <seq>agtttggatacttacatttctgatttccgtaatgcctgcgagaatcctgccaaacataattattatgggttctggaataatggcaagggcctttgcccaggcatatcgccaagctctcacaaatgcatcaaaaaatggtgttgctcaagaagcagtacagaacattagaagagcaagcaaaactatgacagaggtggaggctaggcaagttcttggagttgcagagcattcatcatgggaagacgtgttgcagaaatatgacaacttgtttgagagtaatgctaaaaatggaagtttttatctacaatcaaaagttcatagagcgaaggaatgcttagaatctctttaccaaagtaaagcagaaggcccaaattagttctttgaagttccctgcagcattgcagctagagacattcggggctcttgtaaggagtatttttagtagagggtaattgcgttctaccaccagatgttctcggcaatgtaacatacgtattcaatcctcaattgggccctgttggagagaagcacttaaattaatcattcgtgcagtttgcatcactccgccttttcggtcatttggctaagaaccacgcttcattattgtttcaggcgtttgtacggttaccacagatttgatggaagagggtcgtgaaattgaaagttcggaatccaataaaaaaaaaaaaataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86631" stop="81783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86331" g_stop="86298" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86297" i_stop="83245" i_length="3053">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83244" g_stop="83157" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="122" r_length="88" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83156" i_stop="82745" i_length="412">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82744" g_stop="82614" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="253" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82613" i_stop="82510" i_length="104">
            <donor d_prob="0.951" d_score="0.96"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82509" g_stop="82089" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="672" r_length="419" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="675" polyA_stop="690"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E589211" ref_strand="-">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589211" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86331" e_stop="86298"/>
          <exon e_start="83244" e_stop="83157"/>
          <exon e_start="82744" e_stop="82614"/>
          <exon e_start="82509" e_stop="82089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGGATACTTATATTTCTGATTTCCGTAATGGTAAGTACAATATCAAACTTCCCTCCAATATTCTCCTTCAGATTATCGTGTCTAACTTGCCCTATCTATTTTCTAACCACTTGTTTGAATTCTATTAATAGTTTGTTTAAAATTTCCTACGTGAAGTGAGTTTTTCTTTTGGGGAATCTTGAAGCTGATTGTCTGACTTGATTCATTTTTCTTTCTTTCTCGATTTGGATGGAATCTGGAAATTTAGTAAAAATAGAAACATCAAAAAATGCATGTGGTGGAAGTTGCTACATATTATTTTATTTTATTGGGTGGTGGTGGAGGAGATAGAAGACTCTTGGCTTTATGGTGCGGTTGGTACCAGACGACTTCACACAATCTTTACTTATGTTTCTTGAAACAGAAAGGAAGAAGGACAAACATTAGAAATCATATTGAAGCTCAGCTCAGCTCAGTGTTCTCGACATATAATTAGTAGCAAATAAAAACGGAATGGTTGGATGACTAAGCATGTCACTTCACATTTTAAGATACTGAAATTGATTGTAAGAAAATAATTGAGATGAAGATTGAAGAGGTGAAAGAGATACACCTATATATGATGAAGGAGACTGTAGGTTTCTTTGATTTGTAAAGAGGTTTTGCATTTGCCTTAACATTCTATATTTTTGTAGTATTACCACCACCAAGTATGCCTTAGTCCATTGTTAGTAAGTCAGGGATAAAGTCCTCATGGATAAGCGTTTGCCATTTAAAATCATCTCAGGCTAACATTTTGTCAGTATTAGCAAATTCCCTGTTAACTTTAGGAAATCCCAACCTTAATTTACAACTTATGTAAACAAGTCATGGTTTCTAGTGGACATGTTTAACCTAAGCCCAAAACTTCTTTACTATGTATATTGGTTGCATTGTTTTTTGCCTATAACATTGATAAATTCTACCCTGAACGCAATGTGCTCATGCTGGTAAGAGGAGTTAGAACACGTATAGTGATGGTGAAATAAGTTTAGGGTGCTGGACTCTTGACTTGATTTGGTGCTTAAATTGAGTGTTGCTGACATGATTTGAGGCTGTCAGCAAATTTGCTGATAATACTCAGCCAAATGTTTGTAGCATTTTCTTTTGGCATGAAATGATGTGTTATTCTGGCTCAGAGTGTTGATGCCAATCTTCCATCAAGGAGGAGATCTTGATTCAGTTTGCTAATGCATGAGTTCTTCTGAGTTCTGAATACCAAAATAGGAACTCTGATTGTTCTTTGCCTTTTATTTTCATTTCATTTTCATCTTTCTGGTTTGTTGATTTATTTAGGTAAATGACATGATCAACCTCCCTTAACAGAATGAAATGAAAGGTTAATTGGATGGATTCGCCTGAGCTTTAGGTAGACAGGATTGTAGTGCGTACATGCAGAAAATTTAAATGTATAGACTTGGTCTTCCGGGATAGAAATGTAGCTTATAGAAATAAAATAAGATGATAAAAAGGAGTGAAATGATCCATGCCATGGGAAATACCCCACCAAAGTAAAAAGATAAGTATGAAGGATTTTGAGATGAGTACTGTCACATGGGAGCGATAAGATGAGTGTCATAAAAATTATGAATGTGTAGATGGATGTGTCGCCATACAAATATTTAGACAATACTATAAATGATCACTTCGGACGTAGGATGCGAGTAACACATGAATAATAGATAAGAAAATACTTTTTGATATGATTTGGCGATATCCTTTAAAGACTTCCAAATTCACTGGTCCATATGTATGATACTTTGCTGATTGCAAGTGTTCTTGAAACGTGAAGATAGACTAAAATCACGTTAAAGGGTGTAGTCTCAAAAGATCTATGATCTCTCAAATTTCATGTATTTAGACACAATGAAAGTAAAAGATCATTTTAAGCAATAGAGCAATACCAACTAAATGGGATTAAGGTTTAGAGGTTGTTGGTACCTCTGCATTAAGTTAGATGTTTGTTAGGATTGTTTTTAGTTTGATAAGCAATTGGTTTGTCACTGTATGGGTAGGTGTGAGAAACAGAGAAAATTCGTTTTAGAGAATTCCTTATTTATCTTAAAGACAAATTAGTGAGTGTTGGAATGATATAAGCATAAGCAGAGCAGAATGGATATAGAGGATTTATATAAGCCTAATATAGCTGAGTTTTCCTAGTTTGGAGTTTTTGTGTAGTAATTGTTGTATGAACTCACTCTATGTTATCACTTATCAGTATATTGCGAGCCTACAGACACTGAAAAATATACATCGAAGTAACATATATTAAATTTCATTTCCATCCTATCAGCACCCCCTCCTCCAAGGCTCTAAGAGAACGGAGATTGACCCTAGATTAGAGAAAAAGATATGCTGAATGTAGACTTGAGGCAGAATCTTCTTGAGGTGAAGCAATTATGACCATTTCTTGATAAAAGAAAATTAGTATCATATTTCAATAGAAGATGCATGCATTTGAATGGTTCATGTTTTTAAACATAAATAAGCATGCCTTTAATTATATTTTTTTAACTAAACGTATAACATCTATGTTCTATAAGCATATCATGTAAATGGAATTCTAAAAGATAGCCTCAACTGCTTTTCCAAGCTCCATTTTAGCCTGCAAAATCTTCCAGAATGTGACACTGGTTTCAACTTCGTGTCTCTTTTTTTTAAAAAATAATCCCGGTGTTTGGGCTAGCTCGCACACAACTCGACAAATTCGCGGGTTACCTGTCCCCACCTCCCACCAACAGCATGGACCAGGTAACTTTGTCTATCAAGGCAAGAACGGATGAGAAGATATCACCTAATGATTTGTCTCTGGGAATTGAACCTCGTACCTCATGTTGCTCAACCCCTTTCATTGACAACTAGGCCACACCCTTGGGTGCTTCGACTTCTAGTCTTTCTTTGTATAAGGAAATGGGAAGCCCTCAGAAATTAGTCTGTAGTCTAGAAGCAGCTATAGATTTTTCATACACGTCTCTATTCTTGGTTGGCTAATATAATATTAGAAGTATCTATTTTACACAAAGGGTGCTTGTTACTTAACCCCTCTCATTACTTTCTCATTGCAGGCTGCGAGAATCCTTGCAAACATAATTATTTTGGGTTCTGGAATAATGGCAAGGGCCTTTGCCCAGGCATATCGCCAAGCTCTCACAAGTAAGTTTTTGTTGACGTACACCCTTGTAATCCTTTCCTTCCATAAGAAAACTTGGAATTTTAACTACTGGAGGTGTTTTTTTTCTTTGTTTGGGGGGAGGGGAAAATAAAAATTTGCAGTTTTCTGTGGCACTTGCTTTTGAAATAAAAACACGATTTTTCCTGAGGAGAAGTGTAATTGTGAATTTTGGCCAGATAATGTTGCACAAAACCATTTTGATTCCTGCAAGTTACAGTTCTCCTAGATAGGAAAACAACAGTTCTTGAAGTAACAATGTCCCTAGATTTCAAAACAAAATATATAGTATGTGATAGGTTAATACCCCATTTGTTGATGCACTTGAAGCTTTATCTGCGTACTCCTTGCAACCTTGCTTGGGTTGATAATCAAGTTGTGCTTTGTTAATTGTAGATGCATCAAAAAATGGTGTTGCTCAAGAAGCAGTACAAAACATTAGAAGAGCAAGCAAAACTATGACAGAGGTGGAGGCTAGGCAAGTCCTTGGGGTTGCAGAGCATTCATCATGGGAAGACGTGTTGCAGGTTTGTCTTAGGTGTTTTTATGTGTGATCGTTTTCCCTATGGGGTTTAATGCATTGAATTGACACTTGAAAGTTGTTAATTCGTTTCTTCATCATTTCTTGCAGAAATATGACAACTTGTTTGAGAGTAATGCTAAAAATGGAAGTTTTTATCTACAATCAAAAGTTCATAGAGCGAAGGAATGCTTAGAATCTCTTTACCGAAGTAAAGCAGAGGGCCCAAATTAGTTCTTTGAAGTT-CCTGCAGCATTGCAGCTAGAGACATTCTGGGCTCTTGTAAGGAGTATCTTCAGTAGAGGGTAATTGCTTTCTACCATCAGATGGTCTCCTGCAATGTTACATACATATTCGATCCTCAATTTTGGCCCGTTGGAGAGAAGCACTTAAATTAATCATTCGTGTAGTTTGCATCACTCCGCCTTTTCTGTCATTTTGCTTAGTAGCACGCTTCATTATTATTTCATGCTTTTGTATGGTTACCACATAACTTGATGGAAGAGGGGCGTGAAATTGAAAAATTTGGAAT</genome_strand>
        <mrna_strand>AGTTTGGATACTTACATTTCTGATTTCCGTAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCGAGAATCCTGCCAAACATAATTATTATGGGTTCTGGAATAATGGCAAGGGCCTTTGCCCAGGCATATCGCCAAGCTCTCACAA............................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATCAAAAAATGGTGTTGCTCAAGAAGCAGTACAGAACATTAGAAGAGCAAGCAAAACTATGACAGAGGTGGAGGCTAGGCAAGTTCTTGGAGTTGCAGAGCATTCATCATGGGAAGACGTGTTGCAG........................................................................................................AAATATGACAACTTGTTTGAGAGTAATGCTAAAAATGGAAGTTTTTATCTACAATCAAAAGTTCATAGAGCGAAGGAATGCTTAGAATCTCTTTACCAAAGTAAAGCAGAAGGCCCAAATTAGTTCTTTGAAGTTCCCTGCAGCATTGCAGCTAGAGACATTCGGGGCTCTTGTAAGGAGTATTTTTAGTAGAGGGTAATTGCGTTCTACCACCAGATGTTCT-CGGCAATGTAACATACGTATTCAATCCTCAATTGGGCCCTGTTGGAGAGAAGCACTTAAATTAATCATTCGTGCAGTTTGCATCACTCCGCCTTTTCGGTCATTTGGCTAAGAACCACGCTTCATTATTGTTTCAGGCGTTTGTACGGTTACCACA-GATTTGATGGAAGAGGGTCGTGAAATTG-AAAGTTCGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328756" ref_strand="+" ref_description="SGN-E328756 [cTOC-23-N15]">
      <seq>tttcttcgtgtgcatcccaaccttctccggctaccctaaagtcaccgttgcctgaacgcaggttattcaaattttgttagagtgctgctacaacagtttggatacttatatttctgatttccgtaatggctgcgagaatccttgcaaacataattattttgggttctggaataatggcaagggcctttgcccaggcatatcgccaagctctcacaaatgcatcaaaaaatggtgttgctcaagaagcagtacaaaacattagaagagcaagcaaaactatgacagaggtggaggctaggcaagtccttggggttgcagagcattcatcatgggaagacgtgttgcagaaatatgacaacttgtttgagagtaatgctaaaaatggaagtttttatctacaatcaaaagttcatagagcgaaggaatgcttagaatctctttaccgaagtaaagcagagggcccaaattagttctttgaagttcctgcagcattgcagctagagacattctgggctcttgtaaggagtatcttcagtagagggtaattgctttctaccatcagatggtctcctgcaatgttacatacatattcgatcctcaattttggcccgttggagagaagcacttaaattaatcattcgtgtagtttgcatcactccgccttttctgtcattttgcttagtagcacgcttcattattatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87622" stop="81853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87322" g_stop="87262" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87261" i_stop="86365" i_length="897">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86364" g_stop="86298" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="128" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86297" i_stop="83245" i_length="3053">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83244" g_stop="83157" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="216" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83156" i_stop="82745" i_length="412">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82744" g_stop="82614" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="347" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82613" i_stop="82510" i_length="104">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82509" g_stop="82153" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="704" r_length="357" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E328756" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87322" e_stop="87262"/>
          <exon e_start="86364" e_stop="86298"/>
          <exon e_start="83244" e_stop="83157"/>
          <exon e_start="82744" e_stop="82614"/>
          <exon e_start="82509" e_stop="82153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCGTGTGCATCCCAACCTTCTCCGGCTACCCTAAAGTCACCGTTGCCTGAACGCAGGTTTAGTTTTAATTCTCTCGTTACTGTAATTTTCTTATCTCCTGCAACAAGTTTGAATTTCACACTATGCAAATTGGTGTACCGATTCATTCTGATTCCTGTTATGTAATGTTTTTTAACTGCTGCAACTCTTTATTTAGCTGTATGTTGGTAAAAATCCCATATTTTAGGTAGGAAACGAAGTTGCTACCGTGAAGTATTCAACGATTATTTGGCAACCATAGTAATTTAGCTGCCTGCCAGTAGGTAGTTCTAGTTTTATTCTGAAAAAGGGAGTAGGTATCTCTATTCTGGTAAGCTATTTTTATGTTGCTTTTTGTTTTGTTCATTTTTGTATTTGTGTTATTAGTTTTTTAAAAAAATTTAAGGAAGACAAAAATTGCATGTTTGGTACCTAGTTTTAGGGAACGTGCGTGGGCTTAATACCTAATTTTAACATTTACATCTGGTTGTAATGTTGAAAGCTTTCGAAGGGAGAAATTCATGCCTTTTGAGGATGTTAGTTTTTTTAGGTTTAAAGCCTGTTTTTGCCCGTTTTATTGTGAATACAACTCATCAATTGGCATCAAATTTTTTGTATGTTATAATAAGAAAAGAAGAGGTACAGACGTTAGAAAACTACGTTGCCAAGAATGTGGTGATTTTGCCTAGTGAGAACTGTTTCCAGCAGGTTATTCTAGTTTTCTTTCTCAGTGGACAATAGCAAAATAGTTTCTTTTATTATTTTCAAATAGTACAATCGTATATGTACAGTGAAACAATGAAAGTAGTAGCAGCGTGTATTTCATATTTCATGCTTTTAACCTCTTTAAATGTAGATATAAACTGATTTTCCTGTTTGCATACTATATTTTGTTTTTACACTGATTTATTCAAAGATGCTTGGTCTTATTGTAGGTTATTCAAATTTTGTTAGAGTGCTGCTACAACAGTTTGGATACTTATATTTCTGATTTCCGTAATGGTAAGTACAATATCAAACTTCCCTCCAATATTCTCCTTCAGATTATCGTGTCTAACTTGCCCTATCTATTTTCTAACCACTTGTTTGAATTCTATTAATAGTTTGTTTAAAATTTCCTACGTGAAGTGAGTTTTTCTTTTGGGGAATCTTGAAGCTGATTGTCTGACTTGATTCATTTTTCTTTCTTTCTCGATTTGGATGGAATCTGGAAATTTAGTAAAAATAGAAACATCAAAAAATGCATGTGGTGGAAGTTGCTACATATTATTTTATTTTATTGGGTGGTGGTGGAGGAGATAGAAGACTCTTGGCTTTATGGTGCGGTTGGTACCAGACGACTTCACACAATCTTTACTTATGTTTCTTGAAACAGAAAGGAAGAAGGACAAACATTAGAAATCATATTGAAGCTCAGCTCAGCTCAGTGTTCTCGACATATAATTAGTAGCAAATAAAAACGGAATGGTTGGATGACTAAGCATGTCACTTCACATTTTAAGATACTGAAATTGATTGTAAGAAAATAATTGAGATGAAGATTGAAGAGGTGAAAGAGATACACCTATATATGATGAAGGAGACTGTAGGTTTCTTTGATTTGTAAAGAGGTTTTGCATTTGCCTTAACATTCTATATTTTTGTAGTATTACCACCACCAAGTATGCCTTAGTCCATTGTTAGTAAGTCAGGGATAAAGTCCTCATGGATAAGCGTTTGCCATTTAAAATCATCTCAGGCTAACATTTTGTCAGTATTAGCAAATTCCCTGTTAACTTTAGGAAATCCCAACCTTAATTTACAACTTATGTAAACAAGTCATGGTTTCTAGTGGACATGTTTAACCTAAGCCCAAAACTTCTTTACTATGTATATTGGTTGCATTGTTTTTTGCCTATAACATTGATAAATTCTACCCTGAACGCAATGTGCTCATGCTGGTAAGAGGAGTTAGAACACGTATAGTGATGGTGAAATAAGTTTAGGGTGCTGGACTCTTGACTTGATTTGGTGCTTAAATTGAGTGTTGCTGACATGATTTGAGGCTGTCAGCAAATTTGCTGATAATACTCAGCCAAATGTTTGTAGCATTTTCTTTTGGCATGAAATGATGTGTTATTCTGGCTCAGAGTGTTGATGCCAATCTTCCATCAAGGAGGAGATCTTGATTCAGTTTGCTAATGCATGAGTTCTTCTGAGTTCTGAATACCAAAATAGGAACTCTGATTGTTCTTTGCCTTTTATTTTCATTTCATTTTCATCTTTCTGGTTTGTTGATTTATTTAGGTAAATGACATGATCAACCTCCCTTAACAGAATGAAATGAAAGGTTAATTGGATGGATTCGCCTGAGCTTTAGGTAGACAGGATTGTAGTGCGTACATGCAGAAAATTTAAATGTATAGACTTGGTCTTCCGGGATAGAAATGTAGCTTATAGAAATAAAATAAGATGATAAAAAGGAGTGAAATGATCCATGCCATGGGAAATACCCCACCAAAGTAAAAAGATAAGTATGAAGGATTTTGAGATGAGTACTGTCACATGGGAGCGATAAGATGAGTGTCATAAAAATTATGAATGTGTAGATGGATGTGTCGCCATACAAATATTTAGACAATACTATAAATGATCACTTCGGACGTAGGATGCGAGTAACACATGAATAATAGATAAGAAAATACTTTTTGATATGATTTGGCGATATCCTTTAAAGACTTCCAAATTCACTGGTCCATATGTATGATACTTTGCTGATTGCAAGTGTTCTTGAAACGTGAAGATAGACTAAAATCACGTTAAAGGGTGTAGTCTCAAAAGATCTATGATCTCTCAAATTTCATGTATTTAGACACAATGAAAGTAAAAGATCATTTTAAGCAATAGAGCAATACCAACTAAATGGGATTAAGGTTTAGAGGTTGTTGGTACCTCTGCATTAAGTTAGATGTTTGTTAGGATTGTTTTTAGTTTGATAAGCAATTGGTTTGTCACTGTATGGGTAGGTGTGAGAAACAGAGAAAATTCGTTTTAGAGAATTCCTTATTTATCTTAAAGACAAATTAGTGAGTGTTGGAATGATATAAGCATAAGCAGAGCAGAATGGATATAGAGGATTTATATAAGCCTAATATAGCTGAGTTTTCCTAGTTTGGAGTTTTTGTGTAGTAATTGTTGTATGAACTCACTCTATGTTATCACTTATCAGTATATTGCGAGCCTACAGACACTGAAAAATATACATCGAAGTAACATATATTAAATTTCATTTCCATCCTATCAGCACCCCCTCCTCCAAGGCTCTAAGAGAACGGAGATTGACCCTAGATTAGAGAAAAAGATATGCTGAATGTAGACTTGAGGCAGAATCTTCTTGAGGTGAAGCAATTATGACCATTTCTTGATAAAAGAAAATTAGTATCATATTTCAATAGAAGATGCATGCATTTGAATGGTTCATGTTTTTAAACATAAATAAGCATGCCTTTAATTATATTTTTTTAACTAAACGTATAACATCTATGTTCTATAAGCATATCATGTAAATGGAATTCTAAAAGATAGCCTCAACTGCTTTTCCAAGCTCCATTTTAGCCTGCAAAATCTTCCAGAATGTGACACTGGTTTCAACTTCGTGTCTCTTTTTTTTAAAAAATAATCCCGGTGTTTGGGCTAGCTCGCACACAACTCGACAAATTCGCGGGTTACCTGTCCCCACCTCCCACCAACAGCATGGACCAGGTAACTTTGTCTATCAAGGCAAGAACGGATGAGAAGATATCACCTAATGATTTGTCTCTGGGAATTGAACCTCGTACCTCATGTTGCTCAACCCCTTTCATTGACAACTAGGCCACACCCTTGGGTGCTTCGACTTCTAGTCTTTCTTTGTATAAGGAAATGGGAAGCCCTCAGAAATTAGTCTGTAGTCTAGAAGCAGCTATAGATTTTTCATACACGTCTCTATTCTTGGTTGGCTAATATAATATTAGAAGTATCTATTTTACACAAAGGGTGCTTGTTACTTAACCCCTCTCATTACTTTCTCATTGCAGGCTGCGAGAATCCTTGCAAACATAATTATTTTGGGTTCTGGAATAATGGCAAGGGCCTTTGCCCAGGCATATCGCCAAGCTCTCACAAGTAAGTTTTTGTTGACGTACACCCTTGTAATCCTTTCCTTCCATAAGAAAACTTGGAATTTTAACTACTGGAGGTGTTTTTTTTCTTTGTTTGGGGGGAGGGGAAAATAAAAATTTGCAGTTTTCTGTGGCACTTGCTTTTGAAATAAAAACACGATTTTTCCTGAGGAGAAGTGTAATTGTGAATTTTGGCCAGATAATGTTGCACAAAACCATTTTGATTCCTGCAAGTTACAGTTCTCCTAGATAGGAAAACAACAGTTCTTGAAGTAACAATGTCCCTAGATTTCAAAACAAAATATATAGTATGTGATAGGTTAATACCCCATTTGTTGATGCACTTGAAGCTTTATCTGCGTACTCCTTGCAACCTTGCTTGGGTTGATAATCAAGTTGTGCTTTGTTAATTGTAGATGCATCAAAAAATGGTGTTGCTCAAGAAGCAGTACAAAACATTAGAAGAGCAAGCAAAACTATGACAGAGGTGGAGGCTAGGCAAGTCCTTGGGGTTGCAGAGCATTCATCATGGGAAGACGTGTTGCAGGTTTGTCTTAGGTGTTTTTATGTGTGATCGTTTTCCCTATGGGGTTTAATGCATTGAATTGACACTTGAAAGTTGTTAATTCGTTTCTTCATCATTTCTTGCAGAAATATGACAACTTGTTTGAGAGTAATGCTAAAAATGGAAGTTTTTATCTACAATCAAAAGTTCATAGAGCGAAGGAATGCTTAGAATCTCTTTACCGAAGTAAAGCAGAGGGCCCAAATTAGTTCTTTGAAGTTCCTGCAGCATTGCAGCTAGAGACATTCTGGGCTCTTGTAAGGAGTATCTTCAGTAGAGGGTAATTGCTTTCTACCATCAGATGGTCTCCTGCAATGTTACATACATATTCGATCCTCAATTTTGGCCCGTTGGAGAGAAGCACTTAAATTAATCATTCGTGTAGTTTGCATCACTCCGCCTTTTCTGTCATTTTGCTTAGTAGCACGCTTCATTATTATTTC</genome_strand>
        <mrna_strand>TTTCTTCGTGTGCATCCCAACCTTCTCCGGCTACCCTAAAGTCACCGTTGCCTGAACGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCAAATTTTGTTAGAGTGCTGCTACAACAGTTTGGATACTTATATTTCTGATTTCCGTAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGAGAATCCTTGCAAACATAATTATTTTGGGTTCTGGAATAATGGCAAGGGCCTTTGCCCAGGCATATCGCCAAGCTCTCACAA............................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATCAAAAAATGGTGTTGCTCAAGAAGCAGTACAAAACATTAGAAGAGCAAGCAAAACTATGACAGAGGTGGAGGCTAGGCAAGTCCTTGGGGTTGCAGAGCATTCATCATGGGAAGACGTGTTGCAG........................................................................................................AAATATGACAACTTGTTTGAGAGTAATGCTAAAAATGGAAGTTTTTATCTACAATCAAAAGTTCATAGAGCGAAGGAATGCTTAGAATCTCTTTACCGAAGTAAAGCAGAGGGCCCAAATTAGTTCTTTGAAGTTCCTGCAGCATTGCAGCTAGAGACATTCTGGGCTCTTGTAAGGAGTATCTTCAGTAGAGGGTAATTGCTTTCTACCATCAGATGGTCTCCTGCAATGTTACATACATATTCGATCCTCAATTTTGGCCCGTTGGAGAGAAGCACTTAAATTAATCATTCGTGTAGTTTGCATCACTCCGCCTTTTCTGTCATTTTGCTTAGTAGCACGCTTCATTATTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623479" ref_strand="+" ref_description="SGN-E623479 [88572]">
      <seq>cttcttcttacttcgtgtgcattccaaccttctccggctgctctaaagtcaccgtcgcctgaacgcaggttatttgattcaaattttgttagagtgctgctacaacagtttggatacttatatttctgatttccgtaatggctgcgagaatccttgcaaacataattattatgggttctggaataatggcaagggcctttgcccaggcatatcgccaagctctcacaaatgcatcaaaaaatggtgttgctcaagaagcagtacagaacattagaagagcaagcaaaactatgacagaggtggaggctaggcaagttcttggggttgcagagcattcatcatgggaagacgtgttgcagaaatatgacaacttgtttgagagtaatgctaaaaatggaagtttttatctacaatcaaaagttcatagagcgaaggaatgcttagaatctctttaccaaagtaaagcagagggcccaaattagttctttgaagttcctgcagcattgcagctagagacattctgggctcttgtaaggagtatttttagtagagggtaattgcgttctaccaccagatgttctcctgcaatgttacatacatattcaatcctcaattttggcctgttggagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87628" stop="81936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87329" g_stop="87262" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87261" i_stop="87122" i_length="140">
            <donor d_prob="0.984" d_score="0.92"/>
            <acceptor a_prob="0.804" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87121" g_stop="87116" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="73" r_length="5" r_score="0.667"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87115" i_stop="86365" i_length="751">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.724" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86364" g_stop="86298" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="140" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86297" i_stop="83245" i_length="3053">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83244" g_stop="83157" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="228" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83156" i_stop="82745" i_length="412">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82744" g_stop="82614" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="359" r_length="131" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82613" i_stop="82510" i_length="104">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82509" g_stop="82230" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="639" r_length="280" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E623479" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87329" e_stop="87262"/>
          <exon e_start="87121" e_stop="87116"/>
          <exon e_start="86364" e_stop="86298"/>
          <exon e_start="83244" e_stop="83157"/>
          <exon e_start="82744" e_stop="82614"/>
          <exon e_start="82509" e_stop="82230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTCTTTCTTCGTGTGCATCCCAACCTTCTCCGGCTACCCTAAAGTCACCGTTGCCTGAACGCAGGTTTAGTTTTAATTCTCTCGTTACTGTAATTTTCTTATCTCCTGCAACAAGTTTGAATTTCACACTATGCAAATTGGTGTACCGATTCATTCTGATTCCTGTTATGTAATGTTTTTTAACTGCTGCAACTCTTTATTTAGCTGTATGTTGGTAAAAATCCCATATTTTAGGTAGGAAACGAAGTTGCTACCGTGAAGTATTCAACGATTATTTGGCAACCATAGTAATTTAGCTGCCTGCCAGTAGGTAGTTCTAGTTTTATTCTGAAAAAGGGAGTAGGTATCTCTATTCTGGTAAGCTATTTTTATGTTGCTTTTTGTTTTGTTCATTTTTGTATTTGTGTTATTAGTTTTTTAAAAAAATTTAAGGAAGACAAAAATTGCATGTTTGGTACCTAGTTTTAGGGAACGTGCGTGGGCTTAATACCTAATTTTAACATTTACATCTGGTTGTAATGTTGAAAGCTTTCGAAGGGAGAAATTCATGCCTTTTGAGGATGTTAGTTTTTTTAGGTTTAAAGCCTGTTTTTGCCCGTTTTATTGTGAATACAACTCATCAATTGGCATCAAATTTTTTGTATGTTATAATAAGAAAAGAAGAGGTACAGACGTTAGAAAACTACGTTGCCAAGAATGTGGTGATTTTGCCTAGTGAGAACTGTTTCCAGCAGGTTATTCTAGTTTTCTTTCTCAGTGGACAATAGCAAAATAGTTTCTTTTATTATTTTCAAATAGTACAATCGTATATGTACAGTGAAACAATGAAAGTAGTAGCAGCGTGTATTTCATATTTCATGCTTTTAACCTCTTTAAATGTAGATATAAACTGATTTTCCTGTTTGCATACTATATTTTGTTTTTACACTGATTTATTCAAAGATGCTTGGTCTTATTGTAGGTTATTCAAATTTTGTTAGAGTGCTGCTACAACAGTTTGGATACTTATATTTCTGATTTCCGTAATGGTAAGTACAATATCAAACTTCCCTCCAATATTCTCCTTCAGATTATCGTGTCTAACTTGCCCTATCTATTTTCTAACCACTTGTTTGAATTCTATTAATAGTTTGTTTAAAATTTCCTACGTGAAGTGAGTTTTTCTTTTGGGGAATCTTGAAGCTGATTGTCTGACTTGATTCATTTTTCTTTCTTTCTCGATTTGGATGGAATCTGGAAATTTAGTAAAAATAGAAACATCAAAAAATGCATGTGGTGGAAGTTGCTACATATTATTTTATTTTATTGGGTGGTGGTGGAGGAGATAGAAGACTCTTGGCTTTATGGTGCGGTTGGTACCAGACGACTTCACACAATCTTTACTTATGTTTCTTGAAACAGAAAGGAAGAAGGACAAACATTAGAAATCATATTGAAGCTCAGCTCAGCTCAGTGTTCTCGACATATAATTAGTAGCAAATAAAAACGGAATGGTTGGATGACTAAGCATGTCACTTCACATTTTAAGATACTGAAATTGATTGTAAGAAAATAATTGAGATGAAGATTGAAGAGGTGAAAGAGATACACCTATATATGATGAAGGAGACTGTAGGTTTCTTTGATTTGTAAAGAGGTTTTGCATTTGCCTTAACATTCTATATTTTTGTAGTATTACCACCACCAAGTATGCCTTAGTCCATTGTTAGTAAGTCAGGGATAAAGTCCTCATGGATAAGCGTTTGCCATTTAAAATCATCTCAGGCTAACATTTTGTCAGTATTAGCAAATTCCCTGTTAACTTTAGGAAATCCCAACCTTAATTTACAACTTATGTAAACAAGTCATGGTTTCTAGTGGACATGTTTAACCTAAGCCCAAAACTTCTTTACTATGTATATTGGTTGCATTGTTTTTTGCCTATAACATTGATAAATTCTACCCTGAACGCAATGTGCTCATGCTGGTAAGAGGAGTTAGAACACGTATAGTGATGGTGAAATAAGTTTAGGGTGCTGGACTCTTGACTTGATTTGGTGCTTAAATTGAGTGTTGCTGACATGATTTGAGGCTGTCAGCAAATTTGCTGATAATACTCAGCCAAATGTTTGTAGCATTTTCTTTTGGCATGAAATGATGTGTTATTCTGGCTCAGAGTGTTGATGCCAATCTTCCATCAAGGAGGAGATCTTGATTCAGTTTGCTAATGCATGAGTTCTTCTGAGTTCTGAATACCAAAATAGGAACTCTGATTGTTCTTTGCCTTTTATTTTCATTTCATTTTCATCTTTCTGGTTTGTTGATTTATTTAGGTAAATGACATGATCAACCTCCCTTAACAGAATGAAATGAAAGGTTAATTGGATGGATTCGCCTGAGCTTTAGGTAGACAGGATTGTAGTGCGTACATGCAGAAAATTTAAATGTATAGACTTGGTCTTCCGGGATAGAAATGTAGCTTATAGAAATAAAATAAGATGATAAAAAGGAGTGAAATGATCCATGCCATGGGAAATACCCCACCAAAGTAAAAAGATAAGTATGAAGGATTTTGAGATGAGTACTGTCACATGGGAGCGATAAGATGAGTGTCATAAAAATTATGAATGTGTAGATGGATGTGTCGCCATACAAATATTTAGACAATACTATAAATGATCACTTCGGACGTAGGATGCGAGTAACACATGAATAATAGATAAGAAAATACTTTTTGATATGATTTGGCGATATCCTTTAAAGACTTCCAAATTCACTGGTCCATATGTATGATACTTTGCTGATTGCAAGTGTTCTTGAAACGTGAAGATAGACTAAAATCACGTTAAAGGGTGTAGTCTCAAAAGATCTATGATCTCTCAAATTTCATGTATTTAGACACAATGAAAGTAAAAGATCATTTTAAGCAATAGAGCAATACCAACTAAATGGGATTAAGGTTTAGAGGTTGTTGGTACCTCTGCATTAAGTTAGATGTTTGTTAGGATTGTTTTTAGTTTGATAAGCAATTGGTTTGTCACTGTATGGGTAGGTGTGAGAAACAGAGAAAATTCGTTTTAGAGAATTCCTTATTTATCTTAAAGACAAATTAGTGAGTGTTGGAATGATATAAGCATAAGCAGAGCAGAATGGATATAGAGGATTTATATAAGCCTAATATAGCTGAGTTTTCCTAGTTTGGAGTTTTTGTGTAGTAATTGTTGTATGAACTCACTCTATGTTATCACTTATCAGTATATTGCGAGCCTACAGACACTGAAAAATATACATCGAAGTAACATATATTAAATTTCATTTCCATCCTATCAGCACCCCCTCCTCCAAGGCTCTAAGAGAACGGAGATTGACCCTAGATTAGAGAAAAAGATATGCTGAATGTAGACTTGAGGCAGAATCTTCTTGAGGTGAAGCAATTATGACCATTTCTTGATAAAAGAAAATTAGTATCATATTTCAATAGAAGATGCATGCATTTGAATGGTTCATGTTTTTAAACATAAATAAGCATGCCTTTAATTATATTTTTTTAACTAAACGTATAACATCTATGTTCTATAAGCATATCATGTAAATGGAATTCTAAAAGATAGCCTCAACTGCTTTTCCAAGCTCCATTTTAGCCTGCAAAATCTTCCAGAATGTGACACTGGTTTCAACTTCGTGTCTCTTTTTTTTAAAAAATAATCCCGGTGTTTGGGCTAGCTCGCACACAACTCGACAAATTCGCGGGTTACCTGTCCCCACCTCCCACCAACAGCATGGACCAGGTAACTTTGTCTATCAAGGCAAGAACGGATGAGAAGATATCACCTAATGATTTGTCTCTGGGAATTGAACCTCGTACCTCATGTTGCTCAACCCCTTTCATTGACAACTAGGCCACACCCTTGGGTGCTTCGACTTCTAGTCTTTCTTTGTATAAGGAAATGGGAAGCCCTCAGAAATTAGTCTGTAGTCTAGAAGCAGCTATAGATTTTTCATACACGTCTCTATTCTTGGTTGGCTAATATAATATTAGAAGTATCTATTTTACACAAAGGGTGCTTGTTACTTAACCCCTCTCATTACTTTCTCATTGCAGGCTGCGAGAATCCTTGCAAACATAATTATTTTGGGTTCTGGAATAATGGCAAGGGCCTTTGCCCAGGCATATCGCCAAGCTCTCACAAGTAAGTTTTTGTTGACGTACACCCTTGTAATCCTTTCCTTCCATAAGAAAACTTGGAATTTTAACTACTGGAGGTGTTTTTTTTCTTTGTTTGGGGGGAGGGGAAAATAAAAATTTGCAGTTTTCTGTGGCACTTGCTTTTGAAATAAAAACACGATTTTTCCTGAGGAGAAGTGTAATTGTGAATTTTGGCCAGATAATGTTGCACAAAACCATTTTGATTCCTGCAAGTTACAGTTCTCCTAGATAGGAAAACAACAGTTCTTGAAGTAACAATGTCCCTAGATTTCAAAACAAAATATATAGTATGTGATAGGTTAATACCCCATTTGTTGATGCACTTGAAGCTTTATCTGCGTACTCCTTGCAACCTTGCTTGGGTTGATAATCAAGTTGTGCTTTGTTAATTGTAGATGCATCAAAAAATGGTGTTGCTCAAGAAGCAGTACAAAACATTAGAAGAGCAAGCAAAACTATGACAGAGGTGGAGGCTAGGCAAGTCCTTGGGGTTGCAGAGCATTCATCATGGGAAGACGTGTTGCAGGTTTGTCTTAGGTGTTTTTATGTGTGATCGTTTTCCCTATGGGGTTTAATGCATTGAATTGACACTTGAAAGTTGTTAATTCGTTTCTTCATCATTTCTTGCAGAAATATGACAACTTGTTTGAGAGTAATGCTAAAAATGGAAGTTTTTATCTACAATCAAAAGTTCATAGAGCGAAGGAATGCTTAGAATCTCTTTACCGAAGTAAAGCAGAGGGCCCAAATTAGTTCTTTGAAGTTCCTGCAGCATTGCAGCTAGAGACATTCTGGGCTCTTGTAAGGAGTATCTTCAGTAGAGGGTAATTGCTTTCTACCATCAGATGGTCTCCTGCAATGTTACATACATATTCGATCCTCAATTTTGGCCCGTTGGAGAGAAGCACTT</genome_strand>
        <mrna_strand>CTTCTTCTTACTTCGTGTGCATTCCAACCTTCTCCGGCTGCTCTAAAGTCACCGTCGCCTGAACGCAG............................................................................................................................................GT-TAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTCAAATTTTGTTAGAGTGCTGCTACAACAGTTTGGATACTTATATTTCTGATTTCCGTAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGAGAATCCTTGCAAACATAATTATTATGGGTTCTGGAATAATGGCAAGGGCCTTTGCCCAGGCATATCGCCAAGCTCTCACAA............................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATCAAAAAATGGTGTTGCTCAAGAAGCAGTACAGAACATTAGAAGAGCAAGCAAAACTATGACAGAGGTGGAGGCTAGGCAAGTTCTTGGGGTTGCAGAGCATTCATCATGGGAAGACGTGTTGCAG........................................................................................................AAATATGACAACTTGTTTGAGAGTAATGCTAAAAATGGAAGTTTTTATCTACAATCAAAAGTTCATAGAGCGAAGGAATGCTTAGAATCTCTTTACCAAAGTAAAGCAGAGGGCCCAAATTAGTTCTTTGAAGTTCCTGCAGCATTGCAGCTAGAGACATTCTGGGCTCTTGTAAGGAGTATTTTTAGTAGAGGGTAATTGCGTTCTACCACCAGATGTTCTCCTGCAATGTTACATACATATTCAATCCTCAATTTTGGCCTGTTGGAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288817" ref_strand="+" ref_description="SGN-E288817 [cLES-17-D11]">
      <seq>aggcttttttttttccttctccttccagagctcaaagtgattcttctttcttcgtgtgcatcccaaccttctccggctaccctaaagtcaccgttgcctgaacgcaggttattcaaattttgttatagtgctgctacaacagtttggatacttatatttctgatttccgtaatggctgcgagaatccttgcaaacataattattttgggttctggaataatggcaagggcctttgcccaggcatatcgccaagctctcacaaatgcatcaaaaaatggtgttgctcaagaagcagtacaaaacattagaagagcaagcaaaactatgacagaggtggaggctaggcaagtccttggggttgcagagcattcatcatgggaagacgtgttgcagaaatatgacaacttgtttgagagtaatgctaaaaatggaagtttttatctacaatcaaaagttcatagagcgaaggaatgcttagaatctctttaccgaagtaaagcagagggcccaaattagttctttgaagttcctgcagcattgcagctagagacattctgggctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87668" stop="82039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87368" g_stop="87262" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87261" i_stop="86365" i_length="897">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.724" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86364" g_stop="86298" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="174" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86297" i_stop="83245" i_length="3053">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83244" g_stop="83157" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="262" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83156" i_stop="82745" i_length="412">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82744" g_stop="82614" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="393" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82613" i_stop="82510" i_length="104">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82509" g_stop="82339" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="564" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E288817" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87368" e_stop="87262"/>
          <exon e_start="86364" e_stop="86298"/>
          <exon e_start="83244" e_stop="83157"/>
          <exon e_start="82744" e_stop="82614"/>
          <exon e_start="82509" e_stop="82339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTTTTTTTTTTCCTTCTCCTTCCAGAGCTCAAAGTGATTCTTCTTTCTTCGTGTGCATCCCAACCTTCTCCGGCTACCCTAAAGTCACCGTTGCCTGAACGCAGGTTTAGTTTTAATTCTCTCGTTACTGTAATTTTCTTATCTCCTGCAACAAGTTTGAATTTCACACTATGCAAATTGGTGTACCGATTCATTCTGATTCCTGTTATGTAATGTTTTTTAACTGCTGCAACTCTTTATTTAGCTGTATGTTGGTAAAAATCCCATATTTTAGGTAGGAAACGAAGTTGCTACCGTGAAGTATTCAACGATTATTTGGCAACCATAGTAATTTAGCTGCCTGCCAGTAGGTAGTTCTAGTTTTATTCTGAAAAAGGGAGTAGGTATCTCTATTCTGGTAAGCTATTTTTATGTTGCTTTTTGTTTTGTTCATTTTTGTATTTGTGTTATTAGTTTTTTAAAAAAATTTAAGGAAGACAAAAATTGCATGTTTGGTACCTAGTTTTAGGGAACGTGCGTGGGCTTAATACCTAATTTTAACATTTACATCTGGTTGTAATGTTGAAAGCTTTCGAAGGGAGAAATTCATGCCTTTTGAGGATGTTAGTTTTTTTAGGTTTAAAGCCTGTTTTTGCCCGTTTTATTGTGAATACAACTCATCAATTGGCATCAAATTTTTTGTATGTTATAATAAGAAAAGAAGAGGTACAGACGTTAGAAAACTACGTTGCCAAGAATGTGGTGATTTTGCCTAGTGAGAACTGTTTCCAGCAGGTTATTCTAGTTTTCTTTCTCAGTGGACAATAGCAAAATAGTTTCTTTTATTATTTTCAAATAGTACAATCGTATATGTACAGTGAAACAATGAAAGTAGTAGCAGCGTGTATTTCATATTTCATGCTTTTAACCTCTTTAAATGTAGATATAAACTGATTTTCCTGTTTGCATACTATATTTTGTTTTTACACTGATTTATTCAAAGATGCTTGGTCTTATTGTAGGTTATTCAAATTTTGTTAGAGTGCTGCTACAACAGTTTGGATACTTATATTTCTGATTTCCGTAATGGTAAGTACAATATCAAACTTCCCTCCAATATTCTCCTTCAGATTATCGTGTCTAACTTGCCCTATCTATTTTCTAACCACTTGTTTGAATTCTATTAATAGTTTGTTTAAAATTTCCTACGTGAAGTGAGTTTTTCTTTTGGGGAATCTTGAAGCTGATTGTCTGACTTGATTCATTTTTCTTTCTTTCTCGATTTGGATGGAATCTGGAAATTTAGTAAAAATAGAAACATCAAAAAATGCATGTGGTGGAAGTTGCTACATATTATTTTATTTTATTGGGTGGTGGTGGAGGAGATAGAAGACTCTTGGCTTTATGGTGCGGTTGGTACCAGACGACTTCACACAATCTTTACTTATGTTTCTTGAAACAGAAAGGAAGAAGGACAAACATTAGAAATCATATTGAAGCTCAGCTCAGCTCAGTGTTCTCGACATATAATTAGTAGCAAATAAAAACGGAATGGTTGGATGACTAAGCATGTCACTTCACATTTTAAGATACTGAAATTGATTGTAAGAAAATAATTGAGATGAAGATTGAAGAGGTGAAAGAGATACACCTATATATGATGAAGGAGACTGTAGGTTTCTTTGATTTGTAAAGAGGTTTTGCATTTGCCTTAACATTCTATATTTTTGTAGTATTACCACCACCAAGTATGCCTTAGTCCATTGTTAGTAAGTCAGGGATAAAGTCCTCATGGATAAGCGTTTGCCATTTAAAATCATCTCAGGCTAACATTTTGTCAGTATTAGCAAATTCCCTGTTAACTTTAGGAAATCCCAACCTTAATTTACAACTTATGTAAACAAGTCATGGTTTCTAGTGGACATGTTTAACCTAAGCCCAAAACTTCTTTACTATGTATATTGGTTGCATTGTTTTTTGCCTATAACATTGATAAATTCTACCCTGAACGCAATGTGCTCATGCTGGTAAGAGGAGTTAGAACACGTATAGTGATGGTGAAATAAGTTTAGGGTGCTGGACTCTTGACTTGATTTGGTGCTTAAATTGAGTGTTGCTGACATGATTTGAGGCTGTCAGCAAATTTGCTGATAATACTCAGCCAAATGTTTGTAGCATTTTCTTTTGGCATGAAATGATGTGTTATTCTGGCTCAGAGTGTTGATGCCAATCTTCCATCAAGGAGGAGATCTTGATTCAGTTTGCTAATGCATGAGTTCTTCTGAGTTCTGAATACCAAAATAGGAACTCTGATTGTTCTTTGCCTTTTATTTTCATTTCATTTTCATCTTTCTGGTTTGTTGATTTATTTAGGTAAATGACATGATCAACCTCCCTTAACAGAATGAAATGAAAGGTTAATTGGATGGATTCGCCTGAGCTTTAGGTAGACAGGATTGTAGTGCGTACATGCAGAAAATTTAAATGTATAGACTTGGTCTTCCGGGATAGAAATGTAGCTTATAGAAATAAAATAAGATGATAAAAAGGAGTGAAATGATCCATGCCATGGGAAATACCCCACCAAAGTAAAAAGATAAGTATGAAGGATTTTGAGATGAGTACTGTCACATGGGAGCGATAAGATGAGTGTCATAAAAATTATGAATGTGTAGATGGATGTGTCGCCATACAAATATTTAGACAATACTATAAATGATCACTTCGGACGTAGGATGCGAGTAACACATGAATAATAGATAAGAAAATACTTTTTGATATGATTTGGCGATATCCTTTAAAGACTTCCAAATTCACTGGTCCATATGTATGATACTTTGCTGATTGCAAGTGTTCTTGAAACGTGAAGATAGACTAAAATCACGTTAAAGGGTGTAGTCTCAAAAGATCTATGATCTCTCAAATTTCATGTATTTAGACACAATGAAAGTAAAAGATCATTTTAAGCAATAGAGCAATACCAACTAAATGGGATTAAGGTTTAGAGGTTGTTGGTACCTCTGCATTAAGTTAGATGTTTGTTAGGATTGTTTTTAGTTTGATAAGCAATTGGTTTGTCACTGTATGGGTAGGTGTGAGAAACAGAGAAAATTCGTTTTAGAGAATTCCTTATTTATCTTAAAGACAAATTAGTGAGTGTTGGAATGATATAAGCATAAGCAGAGCAGAATGGATATAGAGGATTTATATAAGCCTAATATAGCTGAGTTTTCCTAGTTTGGAGTTTTTGTGTAGTAATTGTTGTATGAACTCACTCTATGTTATCACTTATCAGTATATTGCGAGCCTACAGACACTGAAAAATATACATCGAAGTAACATATATTAAATTTCATTTCCATCCTATCAGCACCCCCTCCTCCAAGGCTCTAAGAGAACGGAGATTGACCCTAGATTAGAGAAAAAGATATGCTGAATGTAGACTTGAGGCAGAATCTTCTTGAGGTGAAGCAATTATGACCATTTCTTGATAAAAGAAAATTAGTATCATATTTCAATAGAAGATGCATGCATTTGAATGGTTCATGTTTTTAAACATAAATAAGCATGCCTTTAATTATATTTTTTTAACTAAACGTATAACATCTATGTTCTATAAGCATATCATGTAAATGGAATTCTAAAAGATAGCCTCAACTGCTTTTCCAAGCTCCATTTTAGCCTGCAAAATCTTCCAGAATGTGACACTGGTTTCAACTTCGTGTCTCTTTTTTTTAAAAAATAATCCCGGTGTTTGGGCTAGCTCGCACACAACTCGACAAATTCGCGGGTTACCTGTCCCCACCTCCCACCAACAGCATGGACCAGGTAACTTTGTCTATCAAGGCAAGAACGGATGAGAAGATATCACCTAATGATTTGTCTCTGGGAATTGAACCTCGTACCTCATGTTGCTCAACCCCTTTCATTGACAACTAGGCCACACCCTTGGGTGCTTCGACTTCTAGTCTTTCTTTGTATAAGGAAATGGGAAGCCCTCAGAAATTAGTCTGTAGTCTAGAAGCAGCTATAGATTTTTCATACACGTCTCTATTCTTGGTTGGCTAATATAATATTAGAAGTATCTATTTTACACAAAGGGTGCTTGTTACTTAACCCCTCTCATTACTTTCTCATTGCAGGCTGCGAGAATCCTTGCAAACATAATTATTTTGGGTTCTGGAATAATGGCAAGGGCCTTTGCCCAGGCATATCGCCAAGCTCTCACAAGTAAGTTTTTGTTGACGTACACCCTTGTAATCCTTTCCTTCCATAAGAAAACTTGGAATTTTAACTACTGGAGGTGTTTTTTTTCTTTGTTTGGGGGGAGGGGAAAATAAAAATTTGCAGTTTTCTGTGGCACTTGCTTTTGAAATAAAAACACGATTTTTCCTGAGGAGAAGTGTAATTGTGAATTTTGGCCAGATAATGTTGCACAAAACCATTTTGATTCCTGCAAGTTACAGTTCTCCTAGATAGGAAAACAACAGTTCTTGAAGTAACAATGTCCCTAGATTTCAAAACAAAATATATAGTATGTGATAGGTTAATACCCCATTTGTTGATGCACTTGAAGCTTTATCTGCGTACTCCTTGCAACCTTGCTTGGGTTGATAATCAAGTTGTGCTTTGTTAATTGTAGATGCATCAAAAAATGGTGTTGCTCAAGAAGCAGTACAAAACATTAGAAGAGCAAGCAAAACTATGACAGAGGTGGAGGCTAGGCAAGTCCTTGGGGTTGCAGAGCATTCATCATGGGAAGACGTGTTGCAGGTTTGTCTTAGGTGTTTTTATGTGTGATCGTTTTCCCTATGGGGTTTAATGCATTGAATTGACACTTGAAAGTTGTTAATTCGTTTCTTCATCATTTCTTGCAGAAATATGACAACTTGTTTGAGAGTAATGCTAAAAATGGAAGTTTTTATCTACAATCAAAAGTTCATAGAGCGAAGGAATGCTTAGAATCTCTTTACCGAAGTAAAGCAGAGGGCCCAAATTAGTTCTTTGAAGTTCCTGCAGCATTGCAGCTAGAGACATTCTGGGCTCTT</genome_strand>
        <mrna_strand>AGGCTTTTTTTTTTCCTTCTCCTTCCAGAGCTCAAAGTGATTCTTCTTTCTTCGTGTGCATCCCAACCTTCTCCGGCTACCCTAAAGTCACCGTTGCCTGAACGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCAAATTTTGTTATAGTGCTGCTACAACAGTTTGGATACTTATATTTCTGATTTCCGTAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGAGAATCCTTGCAAACATAATTATTTTGGGTTCTGGAATAATGGCAAGGGCCTTTGCCCAGGCATATCGCCAAGCTCTCACAA............................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATCAAAAAATGGTGTTGCTCAAGAAGCAGTACAAAACATTAGAAGAGCAAGCAAAACTATGACAGAGGTGGAGGCTAGGCAAGTCCTTGGGGTTGCAGAGCATTCATCATGGGAAGACGTGTTGCAG........................................................................................................AAATATGACAACTTGTTTGAGAGTAATGCTAAAAATGGAAGTTTTTATCTACAATCAAAAGTTCATAGAGCGAAGGAATGCTTAGAATCTCTTTACCGAAGTAAAGCAGAGGGCCCAAATTAGTTCTTTGAAGTTCCTGCAGCATTGCAGCTAGAGACATTCTGGGCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273998" ref_strand="+" ref_description="SGN-E273998 [cLEN-8-E4]">
      <seq>gattcttctttcttcgtgtgcatcccaaccttctccggctaccctaaagtcaccgttgcctgaacgcaggttattcaaattttgttagagtgctgctacaacagtttggatacttatatttctgatttccgtaatggctgcgagaatccttgcaaacataattattttgggttctggaataatggcaagggcctttgcccaggcatatcgccaagctctcacaaatgcatcaaaaaatggtgttgctcaagaagcagtacaaaacattagaagagcaagcaaaactatgacagaggtggaggctaggcaagtccttggggttgcagagcattcatcatgggaagacgtgttgcagaaatatgacaacttgtttgagagtaatgctaaaaatggaagtttttatctacaatcaaaagttcatagagcgaaggaatgcttagaatctctttaccgaagtaaagcagagggcccaaattagttctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87630" stop="82080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87330" g_stop="87262" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87261" i_stop="86365" i_length="897">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86364" g_stop="86298" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="136" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86297" i_stop="83245" i_length="3053">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83244" g_stop="83157" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="224" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83156" i_stop="82745" i_length="412">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82744" g_stop="82614" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="355" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82613" i_stop="82510" i_length="104">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82509" g_stop="82380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="485" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E273998" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87330" e_stop="87262"/>
          <exon e_start="86364" e_stop="86298"/>
          <exon e_start="83244" e_stop="83157"/>
          <exon e_start="82744" e_stop="82614"/>
          <exon e_start="82509" e_stop="82380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTTCTTTCTTCGTGTGCATCCCAACCTTCTCCGGCTACCCTAAAGTCACCGTTGCCTGAACGCAGGTTTAGTTTTAATTCTCTCGTTACTGTAATTTTCTTATCTCCTGCAACAAGTTTGAATTTCACACTATGCAAATTGGTGTACCGATTCATTCTGATTCCTGTTATGTAATGTTTTTTAACTGCTGCAACTCTTTATTTAGCTGTATGTTGGTAAAAATCCCATATTTTAGGTAGGAAACGAAGTTGCTACCGTGAAGTATTCAACGATTATTTGGCAACCATAGTAATTTAGCTGCCTGCCAGTAGGTAGTTCTAGTTTTATTCTGAAAAAGGGAGTAGGTATCTCTATTCTGGTAAGCTATTTTTATGTTGCTTTTTGTTTTGTTCATTTTTGTATTTGTGTTATTAGTTTTTTAAAAAAATTTAAGGAAGACAAAAATTGCATGTTTGGTACCTAGTTTTAGGGAACGTGCGTGGGCTTAATACCTAATTTTAACATTTACATCTGGTTGTAATGTTGAAAGCTTTCGAAGGGAGAAATTCATGCCTTTTGAGGATGTTAGTTTTTTTAGGTTTAAAGCCTGTTTTTGCCCGTTTTATTGTGAATACAACTCATCAATTGGCATCAAATTTTTTGTATGTTATAATAAGAAAAGAAGAGGTACAGACGTTAGAAAACTACGTTGCCAAGAATGTGGTGATTTTGCCTAGTGAGAACTGTTTCCAGCAGGTTATTCTAGTTTTCTTTCTCAGTGGACAATAGCAAAATAGTTTCTTTTATTATTTTCAAATAGTACAATCGTATATGTACAGTGAAACAATGAAAGTAGTAGCAGCGTGTATTTCATATTTCATGCTTTTAACCTCTTTAAATGTAGATATAAACTGATTTTCCTGTTTGCATACTATATTTTGTTTTTACACTGATTTATTCAAAGATGCTTGGTCTTATTGTAGGTTATTCAAATTTTGTTAGAGTGCTGCTACAACAGTTTGGATACTTATATTTCTGATTTCCGTAATGGTAAGTACAATATCAAACTTCCCTCCAATATTCTCCTTCAGATTATCGTGTCTAACTTGCCCTATCTATTTTCTAACCACTTGTTTGAATTCTATTAATAGTTTGTTTAAAATTTCCTACGTGAAGTGAGTTTTTCTTTTGGGGAATCTTGAAGCTGATTGTCTGACTTGATTCATTTTTCTTTCTTTCTCGATTTGGATGGAATCTGGAAATTTAGTAAAAATAGAAACATCAAAAAATGCATGTGGTGGAAGTTGCTACATATTATTTTATTTTATTGGGTGGTGGTGGAGGAGATAGAAGACTCTTGGCTTTATGGTGCGGTTGGTACCAGACGACTTCACACAATCTTTACTTATGTTTCTTGAAACAGAAAGGAAGAAGGACAAACATTAGAAATCATATTGAAGCTCAGCTCAGCTCAGTGTTCTCGACATATAATTAGTAGCAAATAAAAACGGAATGGTTGGATGACTAAGCATGTCACTTCACATTTTAAGATACTGAAATTGATTGTAAGAAAATAATTGAGATGAAGATTGAAGAGGTGAAAGAGATACACCTATATATGATGAAGGAGACTGTAGGTTTCTTTGATTTGTAAAGAGGTTTTGCATTTGCCTTAACATTCTATATTTTTGTAGTATTACCACCACCAAGTATGCCTTAGTCCATTGTTAGTAAGTCAGGGATAAAGTCCTCATGGATAAGCGTTTGCCATTTAAAATCATCTCAGGCTAACATTTTGTCAGTATTAGCAAATTCCCTGTTAACTTTAGGAAATCCCAACCTTAATTTACAACTTATGTAAACAAGTCATGGTTTCTAGTGGACATGTTTAACCTAAGCCCAAAACTTCTTTACTATGTATATTGGTTGCATTGTTTTTTGCCTATAACATTGATAAATTCTACCCTGAACGCAATGTGCTCATGCTGGTAAGAGGAGTTAGAACACGTATAGTGATGGTGAAATAAGTTTAGGGTGCTGGACTCTTGACTTGATTTGGTGCTTAAATTGAGTGTTGCTGACATGATTTGAGGCTGTCAGCAAATTTGCTGATAATACTCAGCCAAATGTTTGTAGCATTTTCTTTTGGCATGAAATGATGTGTTATTCTGGCTCAGAGTGTTGATGCCAATCTTCCATCAAGGAGGAGATCTTGATTCAGTTTGCTAATGCATGAGTTCTTCTGAGTTCTGAATACCAAAATAGGAACTCTGATTGTTCTTTGCCTTTTATTTTCATTTCATTTTCATCTTTCTGGTTTGTTGATTTATTTAGGTAAATGACATGATCAACCTCCCTTAACAGAATGAAATGAAAGGTTAATTGGATGGATTCGCCTGAGCTTTAGGTAGACAGGATTGTAGTGCGTACATGCAGAAAATTTAAATGTATAGACTTGGTCTTCCGGGATAGAAATGTAGCTTATAGAAATAAAATAAGATGATAAAAAGGAGTGAAATGATCCATGCCATGGGAAATACCCCACCAAAGTAAAAAGATAAGTATGAAGGATTTTGAGATGAGTACTGTCACATGGGAGCGATAAGATGAGTGTCATAAAAATTATGAATGTGTAGATGGATGTGTCGCCATACAAATATTTAGACAATACTATAAATGATCACTTCGGACGTAGGATGCGAGTAACACATGAATAATAGATAAGAAAATACTTTTTGATATGATTTGGCGATATCCTTTAAAGACTTCCAAATTCACTGGTCCATATGTATGATACTTTGCTGATTGCAAGTGTTCTTGAAACGTGAAGATAGACTAAAATCACGTTAAAGGGTGTAGTCTCAAAAGATCTATGATCTCTCAAATTTCATGTATTTAGACACAATGAAAGTAAAAGATCATTTTAAGCAATAGAGCAATACCAACTAAATGGGATTAAGGTTTAGAGGTTGTTGGTACCTCTGCATTAAGTTAGATGTTTGTTAGGATTGTTTTTAGTTTGATAAGCAATTGGTTTGTCACTGTATGGGTAGGTGTGAGAAACAGAGAAAATTCGTTTTAGAGAATTCCTTATTTATCTTAAAGACAAATTAGTGAGTGTTGGAATGATATAAGCATAAGCAGAGCAGAATGGATATAGAGGATTTATATAAGCCTAATATAGCTGAGTTTTCCTAGTTTGGAGTTTTTGTGTAGTAATTGTTGTATGAACTCACTCTATGTTATCACTTATCAGTATATTGCGAGCCTACAGACACTGAAAAATATACATCGAAGTAACATATATTAAATTTCATTTCCATCCTATCAGCACCCCCTCCTCCAAGGCTCTAAGAGAACGGAGATTGACCCTAGATTAGAGAAAAAGATATGCTGAATGTAGACTTGAGGCAGAATCTTCTTGAGGTGAAGCAATTATGACCATTTCTTGATAAAAGAAAATTAGTATCATATTTCAATAGAAGATGCATGCATTTGAATGGTTCATGTTTTTAAACATAAATAAGCATGCCTTTAATTATATTTTTTTAACTAAACGTATAACATCTATGTTCTATAAGCATATCATGTAAATGGAATTCTAAAAGATAGCCTCAACTGCTTTTCCAAGCTCCATTTTAGCCTGCAAAATCTTCCAGAATGTGACACTGGTTTCAACTTCGTGTCTCTTTTTTTTAAAAAATAATCCCGGTGTTTGGGCTAGCTCGCACACAACTCGACAAATTCGCGGGTTACCTGTCCCCACCTCCCACCAACAGCATGGACCAGGTAACTTTGTCTATCAAGGCAAGAACGGATGAGAAGATATCACCTAATGATTTGTCTCTGGGAATTGAACCTCGTACCTCATGTTGCTCAACCCCTTTCATTGACAACTAGGCCACACCCTTGGGTGCTTCGACTTCTAGTCTTTCTTTGTATAAGGAAATGGGAAGCCCTCAGAAATTAGTCTGTAGTCTAGAAGCAGCTATAGATTTTTCATACACGTCTCTATTCTTGGTTGGCTAATATAATATTAGAAGTATCTATTTTACACAAAGGGTGCTTGTTACTTAACCCCTCTCATTACTTTCTCATTGCAGGCTGCGAGAATCCTTGCAAACATAATTATTTTGGGTTCTGGAATAATGGCAAGGGCCTTTGCCCAGGCATATCGCCAAGCTCTCACAAGTAAGTTTTTGTTGACGTACACCCTTGTAATCCTTTCCTTCCATAAGAAAACTTGGAATTTTAACTACTGGAGGTGTTTTTTTTCTTTGTTTGGGGGGAGGGGAAAATAAAAATTTGCAGTTTTCTGTGGCACTTGCTTTTGAAATAAAAACACGATTTTTCCTGAGGAGAAGTGTAATTGTGAATTTTGGCCAGATAATGTTGCACAAAACCATTTTGATTCCTGCAAGTTACAGTTCTCCTAGATAGGAAAACAACAGTTCTTGAAGTAACAATGTCCCTAGATTTCAAAACAAAATATATAGTATGTGATAGGTTAATACCCCATTTGTTGATGCACTTGAAGCTTTATCTGCGTACTCCTTGCAACCTTGCTTGGGTTGATAATCAAGTTGTGCTTTGTTAATTGTAGATGCATCAAAAAATGGTGTTGCTCAAGAAGCAGTACAAAACATTAGAAGAGCAAGCAAAACTATGACAGAGGTGGAGGCTAGGCAAGTCCTTGGGGTTGCAGAGCATTCATCATGGGAAGACGTGTTGCAGGTTTGTCTTAGGTGTTTTTATGTGTGATCGTTTTCCCTATGGGGTTTAATGCATTGAATTGACACTTGAAAGTTGTTAATTCGTTTCTTCATCATTTCTTGCAGAAATATGACAACTTGTTTGAGAGTAATGCTAAAAATGGAAGTTTTTATCTACAATCAAAAGTTCATAGAGCGAAGGAATGCTTAGAATCTCTTTACCGAAGTAAAGCAGAGGGCCCAAATTAGTTCTTTG</genome_strand>
        <mrna_strand>GATTCTTCTTTCTTCGTGTGCATCCCAACCTTCTCCGGCTACCCTAAAGTCACCGTTGCCTGAACGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCAAATTTTGTTAGAGTGCTGCTACAACAGTTTGGATACTTATATTTCTGATTTCCGTAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGAGAATCCTTGCAAACATAATTATTTTGGGTTCTGGAATAATGGCAAGGGCCTTTGCCCAGGCATATCGCCAAGCTCTCACAA............................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATCAAAAAATGGTGTTGCTCAAGAAGCAGTACAAAACATTAGAAGAGCAAGCAAAACTATGACAGAGGTGGAGGCTAGGCAAGTCCTTGGGGTTGCAGAGCATTCATCATGGGAAGACGTGTTGCAG........................................................................................................AAATATGACAACTTGTTTGAGAGTAATGCTAAAAATGGAAGTTTTTATCTACAATCAAAAGTTCATAGAGCGAAGGAATGCTTAGAATCTCTTTACCGAAGTAAAGCAGAGGGCCCAAATTAGTTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568204" ref_strand="+" ref_description="SGN-E568204 [12451]">
      <seq>agtgctgctacaacagtttggatacttatatttctgatttccgtaatggctgcgagaatccttgcaaacataattattatgggttctggaataatggcaagggcctttgcccaggcatatcgccaagctctcacaaatgcatcaaaaaatggtgttgctcaagaagcagtacagaacattagaagagccaacaaaactatgacagaggtggaggctaggcaagttcttggggttgcagagcattcatcatgggaagacgtgttgcagaaatatgacaacttgtttgagagtaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86645" stop="82181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86345" g_stop="86298" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86297" i_stop="83245" i_length="3053">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83244" g_stop="83157" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="136" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83156" i_stop="82745" i_length="412">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82744" g_stop="82614" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="267" r_length="131" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82613" i_stop="82510" i_length="104">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82509" g_stop="82481" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="296" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E568204" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86345" e_stop="86298"/>
          <exon e_start="83244" e_stop="83157"/>
          <exon e_start="82744" e_stop="82614"/>
          <exon e_start="82509" e_stop="82481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGCTGCTACAACAGTTTGGATACTTATATTTCTGATTTCCGTAATGGTAAGTACAATATCAAACTTCCCTCCAATATTCTCCTTCAGATTATCGTGTCTAACTTGCCCTATCTATTTTCTAACCACTTGTTTGAATTCTATTAATAGTTTGTTTAAAATTTCCTACGTGAAGTGAGTTTTTCTTTTGGGGAATCTTGAAGCTGATTGTCTGACTTGATTCATTTTTCTTTCTTTCTCGATTTGGATGGAATCTGGAAATTTAGTAAAAATAGAAACATCAAAAAATGCATGTGGTGGAAGTTGCTACATATTATTTTATTTTATTGGGTGGTGGTGGAGGAGATAGAAGACTCTTGGCTTTATGGTGCGGTTGGTACCAGACGACTTCACACAATCTTTACTTATGTTTCTTGAAACAGAAAGGAAGAAGGACAAACATTAGAAATCATATTGAAGCTCAGCTCAGCTCAGTGTTCTCGACATATAATTAGTAGCAAATAAAAACGGAATGGTTGGATGACTAAGCATGTCACTTCACATTTTAAGATACTGAAATTGATTGTAAGAAAATAATTGAGATGAAGATTGAAGAGGTGAAAGAGATACACCTATATATGATGAAGGAGACTGTAGGTTTCTTTGATTTGTAAAGAGGTTTTGCATTTGCCTTAACATTCTATATTTTTGTAGTATTACCACCACCAAGTATGCCTTAGTCCATTGTTAGTAAGTCAGGGATAAAGTCCTCATGGATAAGCGTTTGCCATTTAAAATCATCTCAGGCTAACATTTTGTCAGTATTAGCAAATTCCCTGTTAACTTTAGGAAATCCCAACCTTAATTTACAACTTATGTAAACAAGTCATGGTTTCTAGTGGACATGTTTAACCTAAGCCCAAAACTTCTTTACTATGTATATTGGTTGCATTGTTTTTTGCCTATAACATTGATAAATTCTACCCTGAACGCAATGTGCTCATGCTGGTAAGAGGAGTTAGAACACGTATAGTGATGGTGAAATAAGTTTAGGGTGCTGGACTCTTGACTTGATTTGGTGCTTAAATTGAGTGTTGCTGACATGATTTGAGGCTGTCAGCAAATTTGCTGATAATACTCAGCCAAATGTTTGTAGCATTTTCTTTTGGCATGAAATGATGTGTTATTCTGGCTCAGAGTGTTGATGCCAATCTTCCATCAAGGAGGAGATCTTGATTCAGTTTGCTAATGCATGAGTTCTTCTGAGTTCTGAATACCAAAATAGGAACTCTGATTGTTCTTTGCCTTTTATTTTCATTTCATTTTCATCTTTCTGGTTTGTTGATTTATTTAGGTAAATGACATGATCAACCTCCCTTAACAGAATGAAATGAAAGGTTAATTGGATGGATTCGCCTGAGCTTTAGGTAGACAGGATTGTAGTGCGTACATGCAGAAAATTTAAATGTATAGACTTGGTCTTCCGGGATAGAAATGTAGCTTATAGAAATAAAATAAGATGATAAAAAGGAGTGAAATGATCCATGCCATGGGAAATACCCCACCAAAGTAAAAAGATAAGTATGAAGGATTTTGAGATGAGTACTGTCACATGGGAGCGATAAGATGAGTGTCATAAAAATTATGAATGTGTAGATGGATGTGTCGCCATACAAATATTTAGACAATACTATAAATGATCACTTCGGACGTAGGATGCGAGTAACACATGAATAATAGATAAGAAAATACTTTTTGATATGATTTGGCGATATCCTTTAAAGACTTCCAAATTCACTGGTCCATATGTATGATACTTTGCTGATTGCAAGTGTTCTTGAAACGTGAAGATAGACTAAAATCACGTTAAAGGGTGTAGTCTCAAAAGATCTATGATCTCTCAAATTTCATGTATTTAGACACAATGAAAGTAAAAGATCATTTTAAGCAATAGAGCAATACCAACTAAATGGGATTAAGGTTTAGAGGTTGTTGGTACCTCTGCATTAAGTTAGATGTTTGTTAGGATTGTTTTTAGTTTGATAAGCAATTGGTTTGTCACTGTATGGGTAGGTGTGAGAAACAGAGAAAATTCGTTTTAGAGAATTCCTTATTTATCTTAAAGACAAATTAGTGAGTGTTGGAATGATATAAGCATAAGCAGAGCAGAATGGATATAGAGGATTTATATAAGCCTAATATAGCTGAGTTTTCCTAGTTTGGAGTTTTTGTGTAGTAATTGTTGTATGAACTCACTCTATGTTATCACTTATCAGTATATTGCGAGCCTACAGACACTGAAAAATATACATCGAAGTAACATATATTAAATTTCATTTCCATCCTATCAGCACCCCCTCCTCCAAGGCTCTAAGAGAACGGAGATTGACCCTAGATTAGAGAAAAAGATATGCTGAATGTAGACTTGAGGCAGAATCTTCTTGAGGTGAAGCAATTATGACCATTTCTTGATAAAAGAAAATTAGTATCATATTTCAATAGAAGATGCATGCATTTGAATGGTTCATGTTTTTAAACATAAATAAGCATGCCTTTAATTATATTTTTTTAACTAAACGTATAACATCTATGTTCTATAAGCATATCATGTAAATGGAATTCTAAAAGATAGCCTCAACTGCTTTTCCAAGCTCCATTTTAGCCTGCAAAATCTTCCAGAATGTGACACTGGTTTCAACTTCGTGTCTCTTTTTTTTAAAAAATAATCCCGGTGTTTGGGCTAGCTCGCACACAACTCGACAAATTCGCGGGTTACCTGTCCCCACCTCCCACCAACAGCATGGACCAGGTAACTTTGTCTATCAAGGCAAGAACGGATGAGAAGATATCACCTAATGATTTGTCTCTGGGAATTGAACCTCGTACCTCATGTTGCTCAACCCCTTTCATTGACAACTAGGCCACACCCTTGGGTGCTTCGACTTCTAGTCTTTCTTTGTATAAGGAAATGGGAAGCCCTCAGAAATTAGTCTGTAGTCTAGAAGCAGCTATAGATTTTTCATACACGTCTCTATTCTTGGTTGGCTAATATAATATTAGAAGTATCTATTTTACACAAAGGGTGCTTGTTACTTAACCCCTCTCATTACTTTCTCATTGCAGGCTGCGAGAATCCTTGCAAACATAATTATTTTGGGTTCTGGAATAATGGCAAGGGCCTTTGCCCAGGCATATCGCCAAGCTCTCACAAGTAAGTTTTTGTTGACGTACACCCTTGTAATCCTTTCCTTCCATAAGAAAACTTGGAATTTTAACTACTGGAGGTGTTTTTTTTCTTTGTTTGGGGGGAGGGGAAAATAAAAATTTGCAGTTTTCTGTGGCACTTGCTTTTGAAATAAAAACACGATTTTTCCTGAGGAGAAGTGTAATTGTGAATTTTGGCCAGATAATGTTGCACAAAACCATTTTGATTCCTGCAAGTTACAGTTCTCCTAGATAGGAAAACAACAGTTCTTGAAGTAACAATGTCCCTAGATTTCAAAACAAAATATATAGTATGTGATAGGTTAATACCCCATTTGTTGATGCACTTGAAGCTTTATCTGCGTACTCCTTGCAACCTTGCTTGGGTTGATAATCAAGTTGTGCTTTGTTAATTGTAGATGCATCAAAAAATGGTGTTGCTCAAGAAGCAGTACAAAACATTAGAAGAGCAAGCAAAACTATGACAGAGGTGGAGGCTAGGCAAGTCCTTGGGGTTGCAGAGCATTCATCATGGGAAGACGTGTTGCAGGTTTGTCTTAGGTGTTTTTATGTGTGATCGTTTTCCCTATGGGGTTTAATGCATTGAATTGACACTTGAAAGTTGTTAATTCGTTTCTTCATCATTTCTTGCAGAAATATGACAACTTGTTTGAGAGTAATGC</genome_strand>
        <mrna_strand>AGTGCTGCTACAACAGTTTGGATACTTATATTTCTGATTTCCGTAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGAGAATCCTTGCAAACATAATTATTATGGGTTCTGGAATAATGGCAAGGGCCTTTGCCCAGGCATATCGCCAAGCTCTCACAA............................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATCAAAAAATGGTGTTGCTCAAGAAGCAGTACAGAACATTAGAAGAGCCAACAAAACTATGACAGAGGTGGAGGCTAGGCAAGTTCTTGGGGTTGCAGAGCATTCATCATGGGAAGACGTGTTGCAG........................................................................................................AAATATGACAACTTGTTTGAGAGTAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545424" ref_strand="+" ref_description="SGN-E545424 [TUS-68-E7](-)">
      <seq>gcagaatagtgtattggacaacaaagtcgaatcaatagctttgcatttgctattttccagatctgtacgcttcaaaatcacgcataggtaccaacaaaagagtgtaattcaccatcaccgacatcatcctcttccagaaacaaaccctctgtaaaagttgcatgcaaaaatatcaacacaatccatacaacaattgacaccaacacattcaaccaaacatgaatacaatcatcccttagttgactcgaaagtagctgagatttcggttgaacctatatgcgaaatcgctgacagaaataggtataggaagacgaatggatctataactctctccatggacgacgaggagcatacgagaaggagaagtcaacggtggcggtgctcgtcggccagatcgaggtacggcagcgggttatgttgatcgttttgtgatggttgaaggagaaggaaagcttctcgagtgccatgtgctatatacatccttcatcttcttcattattttactgatgaagatcacccagaaataaaggagagaaagaaatacaggggaaagtcataacgacaaagctacaaaagtgaaaccacataatcaaacctttacatgcgataacaattgtacaaaaaaataaaggaaataacccanaatttgaaaattcaaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89467" stop="88043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89167" g_stop="88811" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88810" i_stop="88646" i_length="165">
            <donor d_prob="0.061" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88645" g_stop="88333" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="671" r_length="314" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E545424" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89167" e_stop="88811"/>
          <exon e_start="88645" e_stop="88333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAATAGTGTATTGGACAACAAAGTCGAATCAATAGCTTTGCATTTGCTATTTTCCAGATCTGTACGCTTCAAAATCACGCATAGGTACCAACAAAAGAGTGTAATTCACCATCACCGACATCATCCTCTTCCAGAAACAAACCCTCTGTAAAAGTTGCATGCAAAAATATCAACACAATCCATACAACAATTGACACCAACACATTCAACCAAACATGAATACAATCATCCCTTAGTTGACTCGAAAGTAGCTGAGATTTCGGTTGAACCTATATGCGAAATCGCTGACAGAAATAGGTATAGGAAGACGAATGGATCTATAACTCTCTCCATGGACGACGAGGAGCATACGAGGTTAGTGTACCGGATCTAACCCGACTGAAAGAGGCTTCTTCACCCATCTTAACCTTCATTTTCAACCATCTTCATGCCTGACTCCTTCTTTTCTTTCTATACTTTTGTTATTGTCTTTAAGAGATCTTGGCATTAACCCCCTTGAGTCCATTGATTCGCCCGCAGAAGGAGAAGTCAACGGTGGCGGTGCTCGTCGGCCAGATCGAGGTACGGCAGCGGGTTATGTTGATCGTTTTGTGATGGTTGAAGGAGAAGGAAAGCTTCTCGAGTGCCATGTGCTATATACATCCTTCATCTTCTTCATTATTTTACTGATGAAGATCACCCAGAAATAAAGGAGAGAAAGAAATACAGGGGAAAGTCATAACGACAAAGCTACAAAAGTGAAACCACATAATCAAACCTTTACATGCGATAACAATTGTACAAAAAAATAAAGGAAATAACCCA-AATTTGAAAATTCAACCATCTAGTGAAA</genome_strand>
        <mrna_strand>GCAGAATAGTGTATTGGACAACAAAGTCGAATCAATAGCTTTGCATTTGCTATTTTCCAGATCTGTACGCTTCAAAATCACGCATAGGTACCAACAAAAGAGTGTAATTCACCATCACCGACATCATCCTCTTCCAGAAACAAACCCTCTGTAAAAGTTGCATGCAAAAATATCAACACAATCCATACAACAATTGACACCAACACATTCAACCAAACATGAATACAATCATCCCTTAGTTGACTCGAAAGTAGCTGAGATTTCGGTTGAACCTATATGCGAAATCGCTGACAGAAATAGGTATAGGAAGACGAATGGATCTATAACTCTCTCCATGGACGACGAGGAGCATACGAG.....................................................................................................................................................................AAGGAGAAGTCAACGGTGGCGGTGCTCGTCGGCCAGATCGAGGTACGGCAGCGGGTTATGTTGATCGTTTTGTGATGGTTGAAGGAGAAGGAAAGCTTCTCGAGTGCCATGTGCTATATACATCCTTCATCTTCTTCATTATTTTACTGATGAAGATCACCCAGAAATAAAGGAGAGAAAGAAATACAGGGGAAAGTCATAACGACAAAGCTACAAAAGTGAAACCACATAATCAAACCTTTACATGCGATAACAATTGTACAAAAAAATAAAGGAAATAACCCANAATTTGAAAATTCAACCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545425" ref_strand="+" ref_description="SGN-E545425 [TUS-68-E7]">
      <seq>gcagaatagtgtattggacaacaaagtcgaatcaatagctttgcatttgctattttccagatctgtacgcttcaaaatcacgcataggtaccaacaaaagagtgtaattcaccatcaccgacatcatcctcttccagaaacaaaccctctgtaaaagttgcatgcaaaaatatcaacacaatccatacaacaattgacaccaacacattcaaccaaacatgaatacaatcatcccttagttgactcgaaagtagctgagatttcggttgaacctatatgcgaaatcgctgacagaaataggtataggaagacgaatggatctataactctctccatggacgacgaggagcatacgagaaggagaagtcaacggtggcggtgctcgtcggccagatcgaggtacggcagcgggttatgttgatcgttttgtgatggttgaaggagaaggaaagcttctcgagtgccatgtgctatatacatccttcatcttcttcattattttactgatgaagatcacccagaaataaaggagagaaagaaatacaggggaaagtcataacgacaaagctacaaaagtgaaaccacataatcaaacctttacatgcgataacaattgtacaaaaaaataaaggaaataacccaaatttgaaaatcaaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89467" stop="88043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89167" g_stop="88811" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88810" i_stop="88646" i_length="165">
            <donor d_prob="0.061" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88645" g_stop="88333" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="669" r_length="312" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E545425" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89167" e_stop="88811"/>
          <exon e_start="88645" e_stop="88333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAATAGTGTATTGGACAACAAAGTCGAATCAATAGCTTTGCATTTGCTATTTTCCAGATCTGTACGCTTCAAAATCACGCATAGGTACCAACAAAAGAGTGTAATTCACCATCACCGACATCATCCTCTTCCAGAAACAAACCCTCTGTAAAAGTTGCATGCAAAAATATCAACACAATCCATACAACAATTGACACCAACACATTCAACCAAACATGAATACAATCATCCCTTAGTTGACTCGAAAGTAGCTGAGATTTCGGTTGAACCTATATGCGAAATCGCTGACAGAAATAGGTATAGGAAGACGAATGGATCTATAACTCTCTCCATGGACGACGAGGAGCATACGAGGTTAGTGTACCGGATCTAACCCGACTGAAAGAGGCTTCTTCACCCATCTTAACCTTCATTTTCAACCATCTTCATGCCTGACTCCTTCTTTTCTTTCTATACTTTTGTTATTGTCTTTAAGAGATCTTGGCATTAACCCCCTTGAGTCCATTGATTCGCCCGCAGAAGGAGAAGTCAACGGTGGCGGTGCTCGTCGGCCAGATCGAGGTACGGCAGCGGGTTATGTTGATCGTTTTGTGATGGTTGAAGGAGAAGGAAAGCTTCTCGAGTGCCATGTGCTATATACATCCTTCATCTTCTTCATTATTTTACTGATGAAGATCACCCAGAAATAAAGGAGAGAAAGAAATACAGGGGAAAGTCATAACGACAAAGCTACAAAAGTGAAACCACATAATCAAACCTTTACATGCGATAACAATTGTACAAAAAAATAAAGGAAATAACCCAAATTTGAAAATTCAACCATCTAGTGAAA</genome_strand>
        <mrna_strand>GCAGAATAGTGTATTGGACAACAAAGTCGAATCAATAGCTTTGCATTTGCTATTTTCCAGATCTGTACGCTTCAAAATCACGCATAGGTACCAACAAAAGAGTGTAATTCACCATCACCGACATCATCCTCTTCCAGAAACAAACCCTCTGTAAAAGTTGCATGCAAAAATATCAACACAATCCATACAACAATTGACACCAACACATTCAACCAAACATGAATACAATCATCCCTTAGTTGACTCGAAAGTAGCTGAGATTTCGGTTGAACCTATATGCGAAATCGCTGACAGAAATAGGTATAGGAAGACGAATGGATCTATAACTCTCTCCATGGACGACGAGGAGCATACGAG.....................................................................................................................................................................AAGGAGAAGTCAACGGTGGCGGTGCTCGTCGGCCAGATCGAGGTACGGCAGCGGGTTATGTTGATCGTTTTGTGATGGTTGAAGGAGAAGGAAAGCTTCTCGAGTGCCATGTGCTATATACATCCTTCATCTTCTTCATTATTTTACTGATGAAGATCACCCAGAAATAAAGGAGAGAAAGAAATACAGGGGAAAGTCATAACGACAAAGCTACAAAAGTGAAACCACATAATCAAACCTTTACATGCGATAACAATTGTACAAAAAAATAAAGGAAATAACCCAAATTTGAAAA-TCAACCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308688" ref_strand="+" ref_description="SGN-E308688 [cLEZ-13-M1]">
      <seq>cagaatagtgtattggacaacaaagtcgaatcaatagctttgcatttgctattttccagatctgtacgcttcaaaatcacgcataggtaccaacaaaagagtgtaattcaccatcaccgacatcatcctcttccagaaacaaaccctctgtaaaagttgcatgcaaaaatatcaacacaatccatacaacaattgacaccaacacattcaaccaaacatgaatacaatcatcccttagttgactcgaaagtagctgagatttcggttgaacctatatgcgaaatcgctgacagaaataggtataggaagacgaatggatctataactctctccatggacgacgaggagcatacgagaaggagaagtcaacggtggcggtgctcgtcggccagatcgaggtacggcagcgggttatgttgatcgttttgtgatggttgaaggagaaggaaagcttctcgagtgccatgtgctatatacatccttcatcttcttcattattttactgatgaagatcacccagaaataaaggagagaaagaaatacaggggaaagtcataacgacaaaactacaaaagtgaaaccacataatcaaacctttacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89466" stop="88099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89166" g_stop="88811" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88810" i_stop="88646" i_length="165">
            <donor d_prob="0.061" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88645" g_stop="88399" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="603" r_length="247" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E308688" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89166" e_stop="88811"/>
          <exon e_start="88645" e_stop="88399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATAGTGTATTGGACAACAAAGTCGAATCAATAGCTTTGCATTTGCTATTTTCCAGATCTGTACGCTTCAAAATCACGCATAGGTACCAACAAAAGAGTGTAATTCACCATCACCGACATCATCCTCTTCCAGAAACAAACCCTCTGTAAAAGTTGCATGCAAAAATATCAACACAATCCATACAACAATTGACACCAACACATTCAACCAAACATGAATACAATCATCCCTTAGTTGACTCGAAAGTAGCTGAGATTTCGGTTGAACCTATATGCGAAATCGCTGACAGAAATAGGTATAGGAAGACGAATGGATCTATAACTCTCTCCATGGACGACGAGGAGCATACGAGGTTAGTGTACCGGATCTAACCCGACTGAAAGAGGCTTCTTCACCCATCTTAACCTTCATTTTCAACCATCTTCATGCCTGACTCCTTCTTTTCTTTCTATACTTTTGTTATTGTCTTTAAGAGATCTTGGCATTAACCCCCTTGAGTCCATTGATTCGCCCGCAGAAGGAGAAGTCAACGGTGGCGGTGCTCGTCGGCCAGATCGAGGTACGGCAGCGGGTTATGTTGATCGTTTTGTGATGGTTGAAGGAGAAGGAAAGCTTCTCGAGTGCCATGTGCTATATACATCCTTCATCTTCTTCATTATTTTACTGATGAAGATCACCCAGAAATAAAGGAGAGAAAGAAATACAGGGGAAAGTCATAACGACAAAGCTACAAAAGTGAAACCACATAATCAAACCTTTACATG</genome_strand>
        <mrna_strand>CAGAATAGTGTATTGGACAACAAAGTCGAATCAATAGCTTTGCATTTGCTATTTTCCAGATCTGTACGCTTCAAAATCACGCATAGGTACCAACAAAAGAGTGTAATTCACCATCACCGACATCATCCTCTTCCAGAAACAAACCCTCTGTAAAAGTTGCATGCAAAAATATCAACACAATCCATACAACAATTGACACCAACACATTCAACCAAACATGAATACAATCATCCCTTAGTTGACTCGAAAGTAGCTGAGATTTCGGTTGAACCTATATGCGAAATCGCTGACAGAAATAGGTATAGGAAGACGAATGGATCTATAACTCTCTCCATGGACGACGAGGAGCATACGAG.....................................................................................................................................................................AAGGAGAAGTCAACGGTGGCGGTGCTCGTCGGCCAGATCGAGGTACGGCAGCGGGTTATGTTGATCGTTTTGTGATGGTTGAAGGAGAAGGAAAGCTTCTCGAGTGCCATGTGCTATATACATCCTTCATCTTCTTCATTATTTTACTGATGAAGATCACCCAGAAATAAAGGAGAGAAAGAAATACAGGGGAAAGTCATAACGACAAAACTACAAAAGTGAAACCACATAATCAAACCTTTACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317704" ref_strand="+" ref_description="SGN-E317704 [cTOB-8-D15]">
      <seq>ctttagaatcccgaaaataagcatgggcctctttcagactctccggcccaatcatggtctccgggaatggagatgcaacaccagtagtggcaatcttgaaattctcttcaatggagaaattgcagtactaaaatgaacttgggcgaatgaaatagaagggaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89709" stop="90474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90009" g_stop="90174" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E317704" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>166</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90009" e_stop="90174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGAATCCCGAAAATAAGCATGGGCCTCTTTCAGACTCTCCGGCCCAATCATGGTCTCCGGGAATGGAGATGCAACACCAGTAGTGGCAATCTTGAAATTCTCTTCAATGGAGAAATTGCAGTACTAAAATGAACTTGTGCGAATGAAATAGAAGGGAATTTA</genome_strand>
        <mrna_strand>CTTTAGAATCCCGAAAATAAGCATGGGCCTCTTTCAGACTCTCCGGCCCAATCATGGTCTCCGGGAATGGAGATGCAACACCAGTAGTGGCAATCTTGAAATTCTCTTCAATGGAGAAATTGCAGTACTAAAATGAACTTGGGCGAATGAAATAGAAGGGAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245884" ref_strand="-" ref_description="SGN-E245884 [cLEF-51-G20]">
      <seq>tattttgcacattatggaagattttgtatcctttcatagacaaccacaccaagaaaaagatcatgtttgtggaaaacaaacggctgacagcaaccttacttcaagatattgatgaaagccagcttccggagacttacggaggcaaaatgcaattagttcctatacaggacgcctaggcaagtaattgccctacaagcttcaactgtatcaagttgacagtgctttatttttaatagctttgaggaaaaacattaaatagcaaatatacatctatatccattactaaacattcagcttttacatggagtagaaaataaatgacatattttccacctgatctgctagtttgatgttcttcttgatgaatccagcttccattgctatctatcattttgatatgacaaactggatgacgttcaatcttgattctgcaccaaaaaaaaaacaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94257" stop="93065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93957" g_stop="93899" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93898" i_stop="93743" i_length="156">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93742" g_stop="93365" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="437" r_length="378" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="438" polyA_stop="454"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E245884" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245884" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93957" e_stop="93899"/>
          <exon e_start="93742" e_stop="93365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTGCACATTATGGAAGATTTTGTATCCTTTCATAGACAACCACACCAAGAAAAAGGTGAGGTTCTAAAATAATTGTGTTTCACATAAAAGATGGATGAATCAGTTCCGGAGTTCAGTCATACTTGCAGTTGATGTCGAGGATAACTTTGTGAGAAACTTGATTACAACTTCTATTACATCATCCTCACCAAACTATTTTCAATCTTCACAGATCATGTTTGTGGAAAACAAACGGCTGACAGCAACCTTACTTCAAGATATTGATGAAAGCCAGCTTCCGGAGACTTACGGAGGCAAAATGCAATTAGTTCCTATACAGGACGCCTAGGCAAGTAATTGCCCTACAAGCTTCAACTGTATCAAGTTGACAGTGCTTTATTTTTAATAGCTTTGAGGAAAAACATTAAATAGCAAATATACATCTATATCCATTACTAAACATTCAGCTTTTACATGGAGTAGAAAATAAATGACATATTTTCCACCTGATCTGCTAGTTTGATGTTCTTCTTGATGAATCCAGCTTCCATTGCTATCTATCATTTTGATATGACAAACTGGATGACGTTCAATCTTGATTCTGCAACAA</genome_strand>
        <mrna_strand>TATTTTGCACATTATGGAAGATTTTGTATCCTTTCATAGACAACCACACCAAGAAAAAG............................................................................................................................................................ATCATGTTTGTGGAAAACAAACGGCTGACAGCAACCTTACTTCAAGATATTGATGAAAGCCAGCTTCCGGAGACTTACGGAGGCAAAATGCAATTAGTTCCTATACAGGACGCCTAGGCAAGTAATTGCCCTACAAGCTTCAACTGTATCAAGTTGACAGTGCTTTATTTTTAATAGCTTTGAGGAAAAACATTAAATAGCAAATATACATCTATATCCATTACTAAACATTCAGCTTTTACATGGAGTAGAAAATAAATGACATATTTTCCACCTGATCTGCTAGTTTGATGTTCTTCTTGATGAATCCAGCTTCCATTGCTATCTATCATTTTGATATGACAAACTGGATGACGTTCAATCTTGATTCTGCACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347780" ref_strand="+" ref_description="SGN-E347780 [cTOF-26-H11]">
      <seq>aattagctattcttgatagtggggtagaagcttctgctttccgttgctatttctcacactatttataggtgcaaggaagactctgatggaggggaaagcagaggtagtaacaatgaagccaaatactgatgagcttctttctaaacaaataatgaagcaggatgcagcagcaacagaaaaagaagaaattcaaatgcgatgtgacgacgtaatgaagccaaataatgataaacttctctctaaacaaagaatgaagcaggaagcagtagcaacagaaaaagaaggaattcaaatgcaatgcgacgacacaattacagatcaagagatgaataaaattgaactaatgagggctcttgttgaaaaacaagatccttcttccaaggaaatagacgactatgccttgagaaggtttcttcgagctcgtgatctagacatagagaaatctgcagcaatgttcttgaaataccttaagtggagacaaagttttgtaccaaaagggtccattttggtgagtgagataccaaacgagattgcacagaacaagatgttcatgcaaggtgtagacaaacagggttgtcctattgctgtagtttttggtggcaggcatattcaaaacaaattangaggtgttgaagaagtcaaacgttttatagtctttgctctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95643" stop="94151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95343" g_stop="94962" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94961" i_stop="94855" i_length="107">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94854" g_stop="94593" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="644" r_length="262" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94592" i_stop="94472" i_length="121">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.437" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94471" g_stop="94451" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="665" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E347780" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95343" e_stop="94962"/>
          <exon e_start="94854" e_stop="94593"/>
          <exon e_start="94471" e_stop="94451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGCTATTCTTGATAGTGGGGTAGAAGCTTCTGCTTTCCGTTGCTATTTCTCACACTATTTATAGGTGCAAGGAAGACTCTGATGGAGGGGAAAGCAGAGGTAGTAACAATGAAGCCAAATACTGATGAGCTTCTTTCTAAACAAATAATGAAGCAGGATGCAGCAGCAACAGAAAAAGAAGAAATTCAAATGCGATGTGACGACGTAATGAAGCCAAATAATGATAAACTTCTCTCTAAACAAAGAATGAAGCAGGAAGCAGTAGCAACAGAAAAAGAAGGAATTCAAATGCAATGCGACGACACAATTACAGATCAAGAGATGAATAAAATTGAACTAATGAGGGCTCTTGTTGAAAAACAAGATCCTTCTTCCAAGGTATTATACGATTTTCTGCAGCCTTGCAGCATTTCTCTCCCTTTCTAACTATAAAAAGCAATATTTTTTAATCAAAGTAGAATAATTTCCATGTACCTTGTTTGCAGGAAATAGACGACTATGCCTTGAGAAGGTTTCTTCGAGCTCGTGATCTAGACATAGAGAAATCTGCAGCAATGTTCTTGAAATACCTTAAGTGGAGACAAAGTTTTGTACCAAAAGGGTCCATTTTGGTGAGTGAGATACCAAACGAGATTGCACAGAACAAGATGTTCATGCAAGGTGTAGACAAACAGGGTTGTCCTATTGCTGTAGTTTTTGGTGGCAGGCATATTCAAAACAAATTAGGAGGTGTTGAAGAGTTCAAACGTATGACTTCCTTTTTTCCTTTTCACCACCTAATTTCACATAGCCTACTGCATCACGGTCAGTGAAACTGGCTTTGGAATCAGTCAATTTCTCACATCCAAGTCTTTCTTTGATTCCTCAGGTTTTATAGTCTTTGCTCTGG</genome_strand>
        <mrna_strand>AATTAGCTATTCTTGATAGTGGGGTAGAAGCTTCTGCTTTCCGTTGCTATTTCTCACACTATTTATAGGTGCAAGGAAGACTCTGATGGAGGGGAAAGCAGAGGTAGTAACAATGAAGCCAAATACTGATGAGCTTCTTTCTAAACAAATAATGAAGCAGGATGCAGCAGCAACAGAAAAAGAAGAAATTCAAATGCGATGTGACGACGTAATGAAGCCAAATAATGATAAACTTCTCTCTAAACAAAGAATGAAGCAGGAAGCAGTAGCAACAGAAAAAGAAGGAATTCAAATGCAATGCGACGACACAATTACAGATCAAGAGATGAATAAAATTGAACTAATGAGGGCTCTTGTTGAAAAACAAGATCCTTCTTCCAAG...........................................................................................................GAAATAGACGACTATGCCTTGAGAAGGTTTCTTCGAGCTCGTGATCTAGACATAGAGAAATCTGCAGCAATGTTCTTGAAATACCTTAAGTGGAGACAAAGTTTTGTACCAAAAGGGTCCATTTTGGTGAGTGAGATACCAAACGAGATTGCACAGAACAAGATGTTCATGCAAGGTGTAGACAAACAGGGTTGTCCTATTGCTGTAGTTTTTGGTGGCAGGCATATTCAAAACAAATTANGAGGTGTTGAAGAAGTCAAAC.........................................................................................................................GTTTTATAGTCTTTGCTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316162" ref_strand="+" ref_description="SGN-E316162 [cTOA-23-C23]">
      <seq>tctttcaaagatttgatttttctcacttcctccatcttcctcttatatattttctttcttcaactaggctgaaaattccacaaacaagaggaaaattagctattcttgatagtggggtagaagcttctgctttccgttgctatttctcacactatttataggtgcaaggaagactctgatggaggggaaagcagaggtagtaacaatgaagccaaatactgatgagcttctttctaaacaaataatgaagcaggatgcagcagcaacagaaaaagaagaaattcaaatgcgatgtgacgacgtaatgaagccaaataatgataaacttctctctaaacaaagaatgaagcaggaagcagtagcaacagaaaaagaaggaattcaaatgcaatgcgacgacacaattacagatcaagagatgaataaaattgaactaatgagggctcttgttgaaaaacaagatccttcttccaaggaaatagacgactatgccttgagaaggtttcttcgagctcgtgatctagacatagagaaatctgcagcaatgttcttgaaataccttaagtggagacaaagttttgtaccaaaagggtccattttggtgagtgagataccaaacgagattgcacagaacaagatgttcatgcaaggtgtagacaaacagggttgtcctattgctgtagtttttggtggcaggcatattncaaaaaattangagggtgtgaaaagagtcaacgtatgacttccttttttccttttcacacctaatttcacatagcctactgcatcacggtcagtgaaactggctttggaatcagtcaatttctcacatccaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95736" stop="94190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95436" g_stop="94962" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94961" i_stop="94855" i_length="107">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94854" g_stop="94490" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="838" r_length="363" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E316162" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95436" e_stop="94962"/>
          <exon e_start="94854" e_stop="94490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCAAAGATTTGATTTTTCTCACTTCCTCCATCTTCCTCTTATATATTTTCTTTCTTCAACTAGGCTGAAAATTCCACAAACAAGAGGAAAATTAGCTATTCTTGATAGTGGGGTAGAAGCTTCTGCTTTCCGTTGCTATTTCTCACACTATTTATAGGTGCAAGGAAGACTCTGATGGAGGGGAAAGCAGAGGTAGTAACAATGAAGCCAAATACTGATGAGCTTCTTTCTAAACAAATAATGAAGCAGGATGCAGCAGCAACAGAAAAAGAAGAAATTCAAATGCGATGTGACGACGTAATGAAGCCAAATAATGATAAACTTCTCTCTAAACAAAGAATGAAGCAGGAAGCAGTAGCAACAGAAAAAGAAGGAATTCAAATGCAATGCGACGACACAATTACAGATCAAGAGATGAATAAAATTGAACTAATGAGGGCTCTTGTTGAAAAACAAGATCCTTCTTCCAAGGTATTATACGATTTTCTGCAGCCTTGCAGCATTTCTCTCCCTTTCTAACTATAAAAAGCAATATTTTTTAATCAAAGTAGAATAATTTCCATGTACCTTGTTTGCAGGAAATAGACGACTATGCCTTGAGAAGGTTTCTTCGAGCTCGTGATCTAGACATAGAGAAATCTGCAGCAATGTTCTTGAAATACCTTAAGTGGAGACAAAGTTTTGTACCAAAAGGGTCCATTTTGGTGAGTGAGATACCAAACGAGATTGCACAGAACAAGATGTTCATGCAAGGTGTAGACAAACAGGGTTGTCCTATTGCTGTAGTTTTTGGTGGCAGGCATATTCAAAACAAATTAGGAGGTGTTGAAGAGTTCAAACGTATGACTTCCTTTTTTCCTTTTCACCACCTAATTTCACATAGCCTACTGCATCACGGTCAGTGAAACTGGCTTTGGAATCAGTCAATTTCTCACATCCAAGT</genome_strand>
        <mrna_strand>TCTTTCAAAGATTTGATTTTTCTCACTTCCTCCATCTTCCTCTTATATATTTTCTTTCTTCAACTAGGCTGAAAATTCCACAAACAAGAGGAAAATTAGCTATTCTTGATAGTGGGGTAGAAGCTTCTGCTTTCCGTTGCTATTTCTCACACTATTTATAGGTGCAAGGAAGACTCTGATGGAGGGGAAAGCAGAGGTAGTAACAATGAAGCCAAATACTGATGAGCTTCTTTCTAAACAAATAATGAAGCAGGATGCAGCAGCAACAGAAAAAGAAGAAATTCAAATGCGATGTGACGACGTAATGAAGCCAAATAATGATAAACTTCTCTCTAAACAAAGAATGAAGCAGGAAGCAGTAGCAACAGAAAAAGAAGGAATTCAAATGCAATGCGACGACACAATTACAGATCAAGAGATGAATAAAATTGAACTAATGAGGGCTCTTGTTGAAAAACAAGATCCTTCTTCCAAG...........................................................................................................GAAATAGACGACTATGCCTTGAGAAGGTTTCTTCGAGCTCGTGATCTAGACATAGAGAAATCTGCAGCAATGTTCTTGAAATACCTTAAGTGGAGACAAAGTTTTGTACCAAAAGGGTCCATTTTGGTGAGTGAGATACCAAACGAGATTGCACAGAACAAGATGTTCATGCAAGGTGTAGACAAACAGGGTTGTCCTATTGCTGTAGTTTTTGGTGGCAGGCATATTNCAAA-AAATTANGAGGGTGTGAAAAGAGTCAACGTATGACTTCCTTTTTTCCTTTTCA-CACCTAATTTCACATAGCCTACTGCATCACGGTCAGTGAAACTGGCTTTGGAATCAGTCAATTTCTCACATCCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358352" ref_strand="+" ref_description="SGN-E358352 [cLHT-28-J3]">
      <seq>tattcttgaaagtggggtagaagcttctgctttccgttgctatttctcacactatctataggtgcaaggaagactctgatggaggggaaagcagaggtagtaacaatgaagccaaatactgatgagcttctttctaaacaaataatgaagcaggatgcagcagcaacagaaaaagaagaaattcaaatgcgatgtgacgacgcaatgaagccaaatgttgatgaacttctctctaaacaaagaatgaagcaggaagcagtagcaacagaaaaagaaggaattcaaatgcaatgcgacgacacaattacagatcaagagatgaacaaaattgaactaatgagggctcttgttgaaaagcaagatccttcttccaaggaaatagacgactatgccttgagaaggtttcttcgagctcgtgatctagacatagagaaatctgcagcaatgttcttgaaataccttaagtggagacaaagctttgtaccaaaagggtccattttggtgagtgagataccaaacgagattgcacagaacaagatgttcatgcaaggtgtagataaacagggttgtcctattgctgtagtttttggtggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95636" stop="94334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95336" g_stop="94962" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94961" i_stop="94855" i_length="107">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94854" g_stop="94634" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="596" r_length="221" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E358352" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95336" e_stop="94962"/>
          <exon e_start="94854" e_stop="94634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCTTGATAGTGGGGTAGAAGCTTCTGCTTTCCGTTGCTATTTCTCACACTATTTATAGGTGCAAGGAAGACTCTGATGGAGGGGAAAGCAGAGGTAGTAACAATGAAGCCAAATACTGATGAGCTTCTTTCTAAACAAATAATGAAGCAGGATGCAGCAGCAACAGAAAAAGAAGAAATTCAAATGCGATGTGACGACGTAATGAAGCCAAATAATGATAAACTTCTCTCTAAACAAAGAATGAAGCAGGAAGCAGTAGCAACAGAAAAAGAAGGAATTCAAATGCAATGCGACGACACAATTACAGATCAAGAGATGAATAAAATTGAACTAATGAGGGCTCTTGTTGAAAAACAAGATCCTTCTTCCAAGGTATTATACGATTTTCTGCAGCCTTGCAGCATTTCTCTCCCTTTCTAACTATAAAAAGCAATATTTTTTAATCAAAGTAGAATAATTTCCATGTACCTTGTTTGCAGGAAATAGACGACTATGCCTTGAGAAGGTTTCTTCGAGCTCGTGATCTAGACATAGAGAAATCTGCAGCAATGTTCTTGAAATACCTTAAGTGGAGACAAAGTTTTGTACCAAAAGGGTCCATTTTGGTGAGTGAGATACCAAACGAGATTGCACAGAACAAGATGTTCATGCAAGGTGTAGACAAACAGGGTTGTCCTATTGCTGTAGTTTTTGGTGGCAG</genome_strand>
        <mrna_strand>TATTCTTGAAAGTGGGGTAGAAGCTTCTGCTTTCCGTTGCTATTTCTCACACTATCTATAGGTGCAAGGAAGACTCTGATGGAGGGGAAAGCAGAGGTAGTAACAATGAAGCCAAATACTGATGAGCTTCTTTCTAAACAAATAATGAAGCAGGATGCAGCAGCAACAGAAAAAGAAGAAATTCAAATGCGATGTGACGACGCAATGAAGCCAAATGTTGATGAACTTCTCTCTAAACAAAGAATGAAGCAGGAAGCAGTAGCAACAGAAAAAGAAGGAATTCAAATGCAATGCGACGACACAATTACAGATCAAGAGATGAACAAAATTGAACTAATGAGGGCTCTTGTTGAAAAGCAAGATCCTTCTTCCAAG...........................................................................................................GAAATAGACGACTATGCCTTGAGAAGGTTTCTTCGAGCTCGTGATCTAGACATAGAGAAATCTGCAGCAATGTTCTTGAAATACCTTAAGTGGAGACAAAGCTTTGTACCAAAAGGGTCCATTTTGGTGAGTGAGATACCAAACGAGATTGCACAGAACAAGATGTTCATGCAAGGTGTAGATAAACAGGGTTGTCCTATTGCTGTAGTTTTTGGTGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358373" ref_strand="+" ref_description="SGN-E358373 [cLHT-28-L14]">
      <seq>tattcttgaaagtggggtagaagcttctgctttccgttgctatttctcacactatctataggtgcaaggaagactctgatggaggggaaagcagaggtagtaacaatgaagccaaatactgatgagcttctttctaaacaaataatgaagcaggatgcagcagcaacagaaaaagaagaaattcaaatgcgatgtgacgacgcaatgaagccaaatgttgatgaacttctctctaaacaaagaatgaagcaggaagcagtagcaacagaaaaagaaggaattcaaatgcaatgcgacgacacaattacagatcaagagatgaacaaaattgaactaatgagggctcttgttgaaaagcaagatccttcttccaaggaaatagacgactatgccttgagaaggtttcttcgagctcgtgatctagacatagagaaatctgcagcaatgttcttgaaataccttaagtggagacaaagctttgtaccaaaagggtccattttggtgagtgagataccaaacgagattgcacagaacaagatgttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95636" stop="94384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95336" g_stop="94962" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94961" i_stop="94855" i_length="107">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94854" g_stop="94684" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="546" r_length="171" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E358373" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95336" e_stop="94962"/>
          <exon e_start="94854" e_stop="94684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCTTGATAGTGGGGTAGAAGCTTCTGCTTTCCGTTGCTATTTCTCACACTATTTATAGGTGCAAGGAAGACTCTGATGGAGGGGAAAGCAGAGGTAGTAACAATGAAGCCAAATACTGATGAGCTTCTTTCTAAACAAATAATGAAGCAGGATGCAGCAGCAACAGAAAAAGAAGAAATTCAAATGCGATGTGACGACGTAATGAAGCCAAATAATGATAAACTTCTCTCTAAACAAAGAATGAAGCAGGAAGCAGTAGCAACAGAAAAAGAAGGAATTCAAATGCAATGCGACGACACAATTACAGATCAAGAGATGAATAAAATTGAACTAATGAGGGCTCTTGTTGAAAAACAAGATCCTTCTTCCAAGGTATTATACGATTTTCTGCAGCCTTGCAGCATTTCTCTCCCTTTCTAACTATAAAAAGCAATATTTTTTAATCAAAGTAGAATAATTTCCATGTACCTTGTTTGCAGGAAATAGACGACTATGCCTTGAGAAGGTTTCTTCGAGCTCGTGATCTAGACATAGAGAAATCTGCAGCAATGTTCTTGAAATACCTTAAGTGGAGACAAAGTTTTGTACCAAAAGGGTCCATTTTGGTGAGTGAGATACCAAACGAGATTGCACAGAACAAGATGTTCATG</genome_strand>
        <mrna_strand>TATTCTTGAAAGTGGGGTAGAAGCTTCTGCTTTCCGTTGCTATTTCTCACACTATCTATAGGTGCAAGGAAGACTCTGATGGAGGGGAAAGCAGAGGTAGTAACAATGAAGCCAAATACTGATGAGCTTCTTTCTAAACAAATAATGAAGCAGGATGCAGCAGCAACAGAAAAAGAAGAAATTCAAATGCGATGTGACGACGCAATGAAGCCAAATGTTGATGAACTTCTCTCTAAACAAAGAATGAAGCAGGAAGCAGTAGCAACAGAAAAAGAAGGAATTCAAATGCAATGCGACGACACAATTACAGATCAAGAGATGAACAAAATTGAACTAATGAGGGCTCTTGTTGAAAAGCAAGATCCTTCTTCCAAG...........................................................................................................GAAATAGACGACTATGCCTTGAGAAGGTTTCTTCGAGCTCGTGATCTAGACATAGAGAAATCTGCAGCAATGTTCTTGAAATACCTTAAGTGGAGACAAAGCTTTGTACCAAAAGGGTCCATTTTGGTGAGTGAGATACCAAACGAGATTGCACAGAACAAGATGTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316244" ref_strand="+" ref_description="SGN-E316244 [cTOA-23-F19]">
      <seq>tctttcaaagatttgatttttctcacttcctccatcttcctcttatatattttctttcttcaactaggctgaaaattccacaaacaagaggaaaattagctattcttgatagtggggtagaagcttctgctttccgttgctatttctcacactatttataggtgcaaggaagactctgatggaggggaaagcagaggtagtaacaatgaagccaaatactgatgagcttctttctaaacaaataatgaagcaggatgcagcagcaacagaaaaagaagaaattcaaatgcgatgtgacgacgtaatgaagccaaataatgataaacttctctctaaacaaagaatgaagcaggaagcagtagcaacagaaaaagaaggaattcaaatgcaatgcgacgacacaattacagatcaagagatgaataaaattgaactaatgagggctcttgttgaaaaacaagatccttcttccaaggaaatagacgactatgccttgagaaggtttcttcgagctcgtgatctagacatagagaaatctgcagcaatgttcttgaaataccttaagtggagaacaagttttgtaccaaaagggtccattttggtgagtgagataccaaacgagattgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95736" stop="94401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95436" g_stop="94962" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94961" i_stop="94855" i_length="107">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94854" g_stop="94701" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="629" r_length="154" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E316244" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95436" e_stop="94962"/>
          <exon e_start="94854" e_stop="94701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCAAAGATTTGATTTTTCTCACTTCCTCCATCTTCCTCTTATATATTTTCTTTCTTCAACTAGGCTGAAAATTCCACAAACAAGAGGAAAATTAGCTATTCTTGATAGTGGGGTAGAAGCTTCTGCTTTCCGTTGCTATTTCTCACACTATTTATAGGTGCAAGGAAGACTCTGATGGAGGGGAAAGCAGAGGTAGTAACAATGAAGCCAAATACTGATGAGCTTCTTTCTAAACAAATAATGAAGCAGGATGCAGCAGCAACAGAAAAAGAAGAAATTCAAATGCGATGTGACGACGTAATGAAGCCAAATAATGATAAACTTCTCTCTAAACAAAGAATGAAGCAGGAAGCAGTAGCAACAGAAAAAGAAGGAATTCAAATGCAATGCGACGACACAATTACAGATCAAGAGATGAATAAAATTGAACTAATGAGGGCTCTTGTTGAAAAACAAGATCCTTCTTCCAAGGTATTATACGATTTTCTGCAGCCTTGCAGCATTTCTCTCCCTTTCTAACTATAAAAAGCAATATTTTTTAATCAAAGTAGAATAATTTCCATGTACCTTGTTTGCAGGAAATAGACGACTATGCCTTGAGAAGGTTTCTTCGAGCTCGTGATCTAGACATAGAGAAATCTGCAGCAATGTTCTTGAAATACCTTAAGTGGAGACAAAGTTTTGTACCAAAAGGGTCCATTTTGGTGAGTGAGATACCAAACGAGATTGCAC</genome_strand>
        <mrna_strand>TCTTTCAAAGATTTGATTTTTCTCACTTCCTCCATCTTCCTCTTATATATTTTCTTTCTTCAACTAGGCTGAAAATTCCACAAACAAGAGGAAAATTAGCTATTCTTGATAGTGGGGTAGAAGCTTCTGCTTTCCGTTGCTATTTCTCACACTATTTATAGGTGCAAGGAAGACTCTGATGGAGGGGAAAGCAGAGGTAGTAACAATGAAGCCAAATACTGATGAGCTTCTTTCTAAACAAATAATGAAGCAGGATGCAGCAGCAACAGAAAAAGAAGAAATTCAAATGCGATGTGACGACGTAATGAAGCCAAATAATGATAAACTTCTCTCTAAACAAAGAATGAAGCAGGAAGCAGTAGCAACAGAAAAAGAAGGAATTCAAATGCAATGCGACGACACAATTACAGATCAAGAGATGAATAAAATTGAACTAATGAGGGCTCTTGTTGAAAAACAAGATCCTTCTTCCAAG...........................................................................................................GAAATAGACGACTATGCCTTGAGAAGGTTTCTTCGAGCTCGTGATCTAGACATAGAGAAATCTGCAGCAATGTTCTTGAAATACCTTAAGTGGAGAACAAGTTTTGTACCAAAAGGGTCCATTTTGGTGAGTGAGATACCAAACGAGATTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358375" ref_strand="+" ref_description="SGN-E358375 [cLHT-28-N14]">
      <seq>tattcttgtttgtggggtagaagcttctgctttccgttgctatttctcacactatctataggcgcaaggaagactctgatggaggggaaagcagaggtagtaacaatgaagccaaatactgatgagcttctttctaaacaaataatgaagcaggatgcagcagcaacagaaaaagaagaaattcaaatgcgatgtgacgacgcaatgaagccaaatgttgatgaacttctctctaaacaaagaatgaagcatgaagcagtagcaacagaaaaagaaggaattcaaatgcaatgcgacgacacaattacagatcaagagatgaacaaaattgaactaatgagggctcttgttgaaaagcaagatccttcttccaaggaaatagacgactatgccttgagaaggtttcttcgagctcgtgatctagacatagagaaatctgcagcaatgttcttgaaataccttaagtggagacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95636" stop="94456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95336" g_stop="94962" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94961" i_stop="94855" i_length="107">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94854" g_stop="94756" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="474" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E358375" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95336" e_stop="94962"/>
          <exon e_start="94854" e_stop="94756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCTTGATAGTGGGGTAGAAGCTTCTGCTTTCCGTTGCTATTTCTCACACTATTTATAGGTGCAAGGAAGACTCTGATGGAGGGGAAAGCAGAGGTAGTAACAATGAAGCCAAATACTGATGAGCTTCTTTCTAAACAAATAATGAAGCAGGATGCAGCAGCAACAGAAAAAGAAGAAATTCAAATGCGATGTGACGACGTAATGAAGCCAAATAATGATAAACTTCTCTCTAAACAAAGAATGAAGCAGGAAGCAGTAGCAACAGAAAAAGAAGGAATTCAAATGCAATGCGACGACACAATTACAGATCAAGAGATGAATAAAATTGAACTAATGAGGGCTCTTGTTGAAAAACAAGATCCTTCTTCCAAGGTATTATACGATTTTCTGCAGCCTTGCAGCATTTCTCTCCCTTTCTAACTATAAAAAGCAATATTTTTTAATCAAAGTAGAATAATTTCCATGTACCTTGTTTGCAGGAAATAGACGACTATGCCTTGAGAAGGTTTCTTCGAGCTCGTGATCTAGACATAGAGAAATCTGCAGCAATGTTCTTGAAATACCTTAAGTGGAGACAA</genome_strand>
        <mrna_strand>TATTCTTGTTTGTGGGGTAGAAGCTTCTGCTTTCCGTTGCTATTTCTCACACTATCTATAGGCGCAAGGAAGACTCTGATGGAGGGGAAAGCAGAGGTAGTAACAATGAAGCCAAATACTGATGAGCTTCTTTCTAAACAAATAATGAAGCAGGATGCAGCAGCAACAGAAAAAGAAGAAATTCAAATGCGATGTGACGACGCAATGAAGCCAAATGTTGATGAACTTCTCTCTAAACAAAGAATGAAGCATGAAGCAGTAGCAACAGAAAAAGAAGGAATTCAAATGCAATGCGACGACACAATTACAGATCAAGAGATGAACAAAATTGAACTAATGAGGGCTCTTGTTGAAAAGCAAGATCCTTCTTCCAAG...........................................................................................................GAAATAGACGACTATGCCTTGAGAAGGTTTCTTCGAGCTCGTGATCTAGACATAGAGAAATCTGCAGCAATGTTCTTGAAATACCTTAAGTGGAGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302096" ref_strand="+" ref_description="SGN-E302096 [cLEW-19-A12]">
      <seq>gatttagaaggaacaaaattcgtttaccaagaccattgagcaagctcacaggtttcaatgccttctggtactcccatcacctctttgtcattgtctattctctcctcatagtccatggtatcgagctttacttaaccaaagaatggtacaagaagacggtcagtctatacatttgtggaatcaacaataatttcttaatgagtttaacttttatacactcacaactattaaatcaacttacaatgcgagcgtatactggcagacatggatgtacttggctataccaatcatactttattctggtgaaagattactaagggcattcaggtcaagcgtcaaggatgttaaaatattaaaagtggctatgtatcctggaaatgtgttgacacttcaaatgtcaaagccacagggcttcaattataaaagtgggcaatacatgtttgtcaactgtgctgcagtttcaccatttgaatggcacccattttctataacttcagcgcctggagatgagtatctaagtgtacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97537" stop="95919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97237" g_stop="96880" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96879" i_stop="96780" i_length="100">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96779" g_stop="96664" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="474" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96663" i_stop="96272" i_length="392">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96271" g_stop="96219" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="527" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E302096" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97237" e_stop="96880"/>
          <exon e_start="96779" e_stop="96664"/>
          <exon e_start="96271" e_stop="96219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTAGAAGGAACAAAATTCGTTTACCAAGACCATTGAACAAGCTCACAGGTTTCAATGCCTTCTGGTACTCCCATCACCTCTTTGTCATTGTCTATTCTCTCCTCATAGTCCATGGTATCGAGCTTTACTTAACCAAAGAATGGTACAAGAAGACGGTCAGTCTATACATTTGTGGAATCAACAATAATTTCTTAATGAGTTTAACTTTTATACACTCACAACTATTAAATCAACTTACAATGCGAGCGTATACTGGCAGACATGGATGTACTTGGCTATACCAATCATACTTTATTCTGGTGAAAGATTACTAAGGGCATTCAGGTCAAGCGTCAAGGATGTTAAAATATTAAAAGTAAGTTGAGTCCAAATCTATACATATAATTTAGTTATAATTCTTGATAATATCAAGGTTGTTGAGACAAATGATAGATTTGCACTTAATATGGAGCTAGGTGGCTATGTATCCTGGAAATGTGTTGACACTTCAAATGTCAAAGCCACAGGGCTTCAATTATAAAAGTGGGCAATACATGTTTGTCAACTGTGCTGCAGTTTCACCATTTGAATGGTAGGTGATGCTTAATAAATAAATTACTACTAATTAAGTGTCACATGTGTTTCTTAATTGTGTTATTAATTGTTCTTTTTTCTTTTTCTTGAATAAATTTTCTTAAAATATGAATTTCAAATCTTGAAAATAAGATATGTTATCTATTACAACAGATAAAAATTGTCTGATGGTGTAAAAATATGTTAACTGAATTACATTGATTGTGCAAAAGACACGATATGAATCTCATTCACTCTCAATCACTAATTAGATGACGAGGCGTTTGACTATCGTAAAAGAGTCCAAGTACATTTAGTCTCATGTTTACCTGTATTTGGTTGGATTTCTTTGTTTTTAACTCGATACACGTACTGTTCTTGTGACTTGGCAAATATTATATATATTACCAGGCACCCATTTTCTATAACTTCAGCGCCTGGAGATGAGTATCTAAGTGTACATA</genome_strand>
        <mrna_strand>GATTTAGAAGGAACAAAATTCGTTTACCAAGACCATTGAGCAAGCTCACAGGTTTCAATGCCTTCTGGTACTCCCATCACCTCTTTGTCATTGTCTATTCTCTCCTCATAGTCCATGGTATCGAGCTTTACTTAACCAAAGAATGGTACAAGAAGACGGTCAGTCTATACATTTGTGGAATCAACAATAATTTCTTAATGAGTTTAACTTTTATACACTCACAACTATTAAATCAACTTACAATGCGAGCGTATACTGGCAGACATGGATGTACTTGGCTATACCAATCATACTTTATTCTGGTGAAAGATTACTAAGGGCATTCAGGTCAAGCGTCAAGGATGTTAAAATATTAAAA....................................................................................................GTGGCTATGTATCCTGGAAATGTGTTGACACTTCAAATGTCAAAGCCACAGGGCTTCAATTATAAAAGTGGGCAATACATGTTTGTCAACTGTGCTGCAGTTTCACCATTTGAATG........................................................................................................................................................................................................................................................................................................................................................................................................GCACCCATTTTCTATAACTTCAGCGCCTGGAGATGAGTATCTAAGTGTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341417" ref_strand="+" ref_description="SGN-E341417 [cTOE-23-B12]">
      <seq>agttgttgatttataaatacttattataaagtcaataatggggggcttttcattttaatggcggatatcactataacaaacaatctgattcattttctagcccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgacaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105365" stop="107257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105665" g_stop="106021" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="412" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="538" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="633" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E341417" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105665" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGTTGATATATAAATACTTATTATAAAGTCAATAATAAGTGGCTTCTCATTTTAATGGCGGATATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC</genome_strand>
        <mrna_strand>AGTTGTTGATTTATAAATACTTATTATAAAGTCAATAATGGGGGGCTTTTCATTTTAATGGCGGATATCACTATAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGACAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321916" ref_strand="+" ref_description="SGN-E321916 [cTOB-29-E13]">
      <seq>ttttaatggcggatattactagaacaaacaatctgattcattttctagcccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaagctttcggtgtttttcaccatatcagaagattgacgtggacatagcgacccatatccatggttatgacgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105417" stop="108008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105717" g_stop="106021" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="360" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="486" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="581" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="666" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="725" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107665" g_stop="107708" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="769" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E321916" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105717" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATGGCGGATATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGC</genome_strand>
        <mrna_strand>TTTTAATGGCGGATATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTC-ACCATATCAGAAG....................................................................................................................................................................................................................................................................................ATTGACGTGGACATAGCGACCCATATCCATGGTTATGACGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365803" ref_strand="+" ref_description="SGN-E365803 [cLPT-8-O19]">
      <seq>ggaattcggcacgaggggcggatattactagaacaagcaatctgattcattttctagcccctatagcttcatcttcttaaatatcttctgctctaatatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttaatattattgaactgaaaatggctgtggctatggtttcttgtggaatcccaactagtttaaaacttatagagaagcaacccatttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattattctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105424" stop="107013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105724" g_stop="106021" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="314" r_length="298" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="369" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106713" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="431" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E365803" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105724" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGATATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTC</genome_strand>
        <mrna_strand>GGCGGATATTACTAGAACAAGCAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTCTGCTCTAATATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTAATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCAACTAGTTTAAAACTTATAGAGAAGCAACCCATTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTATTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365837" ref_strand="+" ref_description="SGN-E365837 [cLPT-8-M22]">
      <seq>gcggatattactagaacaagcaatctgattcattttctagcccctatagcttcatcttcttaaatatcttctgctctaatatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttaatattattgaactgaaaatggctgtggctatggtttcttgtggaatcccaactagtttaaaacttatagagaagcaacccatttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattattctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105425" stop="106979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105725" g_stop="106021" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="352" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106679" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="380" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E365837" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105725" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGATATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAG</genome_strand>
        <mrna_strand>GCGGATATTACTAGAACAAGCAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTCTGCTCTAATATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTAATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCAACTAGTTTAAAACTTATAGAGAAGCAACCCATTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTATTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738065" ref_strand="+" ref_description="SGN-E738065 [LC12BA03]">
      <seq>cggatattactagaacaaacaatctgattcattttctagcccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaagctttcggtgtttttcaaccatatcagaagattgacgtggacatagcgacccatatccatgtttatgacgatgctcctgaaagaagtttactctgtgtagagacagcagacagacctggactgatagttgatcttgtcaagaccattactgacataaatgttgatgttgaatcaggagagttcgatactgagggtttgcttgcntaagcgaaatttcatgtcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105426" stop="108402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105726" g_stop="106021" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="351" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="477" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="572" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="657" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="717" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107665" g_stop="107720" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="773" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="107721" i_stop="107839" i_length="119">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="107840" g_stop="107945" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="879" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="107946" i_stop="108069" i_length="124">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="108070" g_stop="108102" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="880" r_stop="912" r_length="33" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E738065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>912</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105726" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107720"/>
          <exon e_start="107840" e_stop="107945"/>
          <exon e_start="108070" e_stop="108102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAGGTAAGATCATATTCCCATTGCTTGGTTTTGATCAGTAAATACTGATACTGATCAACCTCATTAAGTGATCCATTTAGTGCACAACTATAAGAGAATAATAAAATGCCTCTATTTTGCAGTTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAGGTGAGATTTTTTCAGTCGGTTTTCCAAATCATTGCACCAAACTGTTTAGGTAGTGGCTGTGCCGTCTAATAAGTATCAACCTGCAGTAGTTAGTATTGAGTTAAAAAGTTTCATTTTGGTGTAGGGTTTGCTTGCTAAGGCGAAATTTCATGTCAAC</genome_strand>
        <mrna_strand>CGGATATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAG....................................................................................................................................................................................................................................................................................ATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG.......................................................................................................................TTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAG............................................................................................................................GGTTTGCTTGCNTAAGCGAAATTTCATGTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738988" ref_strand="+" ref_description="SGN-E738988 [LC15CH05]">
      <seq>cgtttattactagaacaaacaatctgattcattttctagcccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaagctttcggtgtttttcaaccatatcagaagattgacgtggacatagcgacccatatccatgtttatgacgatgctcctgaaagaagtttactctgtgtagagacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105426" stop="108160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105726" g_stop="106021" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="351" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="477" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="572" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="657" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="717" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107665" g_stop="107720" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="773" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="107721" i_stop="107839" i_length="119">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="107840" g_stop="107860" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="794" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E738988" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105726" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107720"/>
          <exon e_start="107840" e_stop="107860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAGGTAAGATCATATTCCCATTGCTTGGTTTTGATCAGTAAATACTGATACTGATCAACCTCATTAAGTGATCCATTTAGTGCACAACTATAAGAGAATAATAAAATGCCTCTATTTTGCAGTTTACTCTGTGTAGAGACAGC</genome_strand>
        <mrna_strand>CGTTTATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAG....................................................................................................................................................................................................................................................................................ATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG.......................................................................................................................TTTACTCTGTGTAGAGACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264252" ref_strand="+" ref_description="SGN-E264252 [cLEG-70-P9]">
      <seq>cggatattactagaacaaacaatctgattcattttctagcccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttaccctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105426" stop="107535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105726" g_stop="106021" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="351" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="478" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="573" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="658" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107329" g_stop="107338" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="668" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E264252" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105726" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTA-CCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCT</genome_strand>
        <mrna_strand>CGGATATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347477" ref_strand="+" ref_description="SGN-E347477 [cTOF-33-D2]">
      <seq>cggatattactagaacaaacaatctgattcattttctagcccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcgtaagttcatgttgttggttcctttgtgctgctaggtgatttttctgtttctcttatacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105426" stop="107316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105726" g_stop="106021" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="351" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="477" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="107016" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="634" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E347477" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105726" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="107016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTG</genome_strand>
        <mrna_strand>CGGATATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264873" ref_strand="+" ref_description="SGN-E264873 [cLEG-71-D3]">
      <seq>cggatattactagaacaaacaatctgattcattttctagcccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105426" stop="107235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105726" g_stop="106021" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="351" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="477" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106935" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="553" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E264873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105726" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACA</genome_strand>
        <mrna_strand>CGGATATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704090" ref_strand="+" ref_description="SGN-E704090 [FA23BC12]">
      <seq>ggatattactagaacaaacaatctgattcattttctagcccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaagctttcggtgtttttcaaccatatcagaagattgacgtggacatagcgacccatatccatgtttatgacgatgctcctgaaagaagtttactctgtgtagagacagcagacagacctggactgatagttgatctttgtcagaccattactgacataaatgttgatgttgaatcaggagagttcgatactgagggtttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105427" stop="108253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105727" g_stop="106021" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="350" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="476" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="571" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="656" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="716" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107665" g_stop="107720" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="772" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="107721" i_stop="107839" i_length="119">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="107840" g_stop="107945" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="878" r_length="106" r_score="0.962"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="107946" i_stop="108069" i_length="124">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="108070" g_stop="108078" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="879" r_stop="887" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E704090" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105727" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107720"/>
          <exon e_start="107840" e_stop="107945"/>
          <exon e_start="108070" e_stop="108078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAGGTAAGATCATATTCCCATTGCTTGGTTTTGATCAGTAAATACTGATACTGATCAACCTCATTAAGTGATCCATTTAGTGCACAACTATAAGAGAATAATAAAATGCCTCTATTTTGCAGTTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAGGTGAGATTTTTTCAGTCGGTTTTCCAAATCATTGCACCAAACTGTTTAGGTAGTGGCTGTGCCGTCTAATAAGTATCAACCTGCAGTAGTTAGTATTGAGTTAAAAAGTTTCATTTTGGTGTAGGGTTTGCTT</genome_strand>
        <mrna_strand>GGATATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAG....................................................................................................................................................................................................................................................................................ATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG.......................................................................................................................TTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTTGTCAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAG............................................................................................................................GGTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346979" ref_strand="+" ref_description="SGN-E346979 [cTOF-25-K9]">
      <seq>ggatattactagaacaaacaatctgattcattttctagcccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaacttttcggtggttttcaccatatcagaagattgacgtggacatagcgaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105427" stop="107987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105727" g_stop="106021" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="350" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="476" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="571" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="657" r_length="86" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="716" r_length="59" r_score="0.933"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107665" g_stop="107687" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="739" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E346979" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105727" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGG-AAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCA</genome_strand>
        <mrna_strand>GGATATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAACTTTTCGGTGGTTTTC-ACCATATCAGAAG....................................................................................................................................................................................................................................................................................ATTGACGTGGACATAGCGACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271653" ref_strand="+" ref_description="SGN-E271653 [cLEM-23-A14]">
      <seq>tattactagaacaaacaatctgattcattttctagcccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105430" stop="107256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105730" g_stop="106021" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="347" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="473" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="568" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107153" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="579" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E271653" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105730" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTA</genome_strand>
        <mrna_strand>TATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409142" ref_strand="+" ref_description="SGN-E409142 [PPI-13-A14]">
      <seq>ctagaacaagcaatctgcttcattttctagcccccatagcttcattttcttaaatatcttttagtctactatatatcttaagattagaataataatacattttctactttttagtgcatcttcttctttcttgatattattgaactgaaatggctgtagctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccatttcaactccaggcttctttaatggctctttagctttgaatccagtccaaaaactgcacattacacccaaaagattagctttatctgggagtacaattgttccgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaatcgatttggattcagatccagaagcaacgatcgtagaggttacctttggggatcgccttggggcacttctcgacacaatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtatgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaagctttcggtgtttttcaccatatcagaagattgacgtggacatagcgacccatatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105435" stop="107992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105735" g_stop="106021" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="341" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="467" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="562" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="647" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="706" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107665" g_stop="107692" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="734" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E409142" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105735" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCC</genome_strand>
        <mrna_strand>CTAGAACAAGCAATCTGCTTCATTTTCTAGCCCCCATAGCTTCATTTTCTTAAATATCTTTTAGTCTACTATATATCTTAAGATTAGAATAATAATACATTTTCTACTTTTTAGTGCATCTTCTTCTTTCTTGATATTATTGAACTG-AAATGGCTGTAGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCATTTCAACTCCAGGCTTCTTTAATGGCTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACATTACACCCAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCCGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATCGATTTGGATTCAGATCCAGAAGCAACGATCGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACA..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTATGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTC-ACCATATCAGAAG....................................................................................................................................................................................................................................................................................ATTGACGTGGACATAGCGACCCATATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409229" ref_strand="+" ref_description="SGN-E409229 [PPI-13-B13]">
      <seq>ctagaacaagcaatctgcttcattttctagcccccatagcttcattttcttaaatatcttttagtctactatatatcttaagattagaataataatacattttctactttttagtgcatcttcttctttcttgatattattgaactgaaatggctgtagctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccatttcaactccaggcttctttaatggctctttagctttgaatccagtccaaaaactgcacattacacccaaaagattagctttatctgggagtacaattgttccgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaatcgatttggattcagatccagaagcaacgatcgtagaggttacctttggggatcgccttggggcacttctcgacacaatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtatgtcttgattcatctgggaaagcatacacattcgccatcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105435" stop="107251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105735" g_stop="106021" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="341" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="467" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106951" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="559" r_length="92" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E409229" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105735" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGG-AAGCATAACACATTCGCCATCACAAA</genome_strand>
        <mrna_strand>CTAGAACAAGCAATCTGCTTCATTTTCTAGCCCCCATAGCTTCATTTTCTTAAATATCTTTTAGTCTACTATATATCTTAAGATTAGAATAATAATACATTTTCTACTTTTTAGTGCATCTTCTTCTTTCTTGATATTATTGAACTG-AAATGGCTGTAGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCATTTCAACTCCAGGCTTCTTTAATGGCTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACATTACACCCAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCCGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATCGATTTGGATTCAGATCCAGAAGCAACGATCGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACA..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTATGTCTTGATTCATCTGGGAAAGCAT-ACACATTCGCCATCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446247" ref_strand="+" ref_description="SGN-E446247 [cSTA-20-O14]">
      <seq>ctagaacaagcaatctgcttcattttctagcccccatagcttcattttcttaaatatctttttgtctactatatatcttaagattagaataggaatccattttctactttttagtgcatcttcttctttcttgatattattgaactgaaatggctgtggctatggtttcttgtggaatgcccactagtttaaaacttatagagaagcaacccatttcaactccaggcttctttaatggctctttagctttgaatccagtccaaaaactgcacattacacccaaaagattagctttttctgggagtacaattattcctaaagcatcggttacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaatcgatttggattcagatccagaagcaacgatcgtagaggttacctttggggatcgccttggggcacttctcgacacaatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtatgtcttgattcatctgggaagcataacacattcgccatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105435" stop="107249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105735" g_stop="106021" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="341" r_length="55" r_score="0.909"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="467" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106949" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="557" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E446247" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105735" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACA</genome_strand>
        <mrna_strand>CTAGAACAAGCAATCTGCTTCATTTTCTAGCCCCCATAGCTTCATTTTCTTAAATATCTTTTTGTCTACTATATATCTTAAGATTAGAATAGGAATCCATTTTCTACTTTTTAGTGCATCTTCTTCTTTCTTGATATTATTGAACTG-AAATGGCTGTGGCTATGGTTTCTTGTGGAATGCCCACTAGTTTAAAACTTATAGAGAAGCAACCCATTTCAACTCCAGGCTTCTTTAATGGCTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACATTACACCCAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTTTCTGGGAGTACAATTATTCCTAAAGCATCGGTTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATCGATTTGGATTCAGATCCAGAAGCAACGATCGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACA..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTATGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687790" ref_strand="+" ref_description="SGN-E687790 [T3_tus_81_A16]">
      <seq>gaacaaacaatctgattcattttctagcccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaagctttcggtgtttttcaaccatatcagaagattgacgtgaacatagcgacccatatccatgtttatgacgatgctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105438" stop="108012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105738" g_stop="106021" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="339" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="465" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="560" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="645" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="705" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107665" g_stop="107712" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="753" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E687790" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105738" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCT</genome_strand>
        <mrna_strand>GAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAG....................................................................................................................................................................................................................................................................................ATTGACGTGAACATAGCGACCCATATCCATGTTTATGACGATGCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298625" ref_strand="+" ref_description="SGN-E298625 [cLET-44-K15]">
      <seq>gaacaaacaatctgattcattttctagcccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtgtaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcaggtccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105438" stop="107238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105738" g_stop="106021" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="339" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="465" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106938" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="544" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E298625" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105738" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACAT</genome_strand>
        <mrna_strand>GAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTGTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGGTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470212" ref_strand="+" ref_description="SGN-E470212 [cSTB-17-G18]">
      <seq>gaacaagcaatctgcttcattttctagcccccatagcttcattttcttaaatatcttttagtctactatatatcttaagattagaataataatacattttctactttttagtgcatcttcttctttcttgatattattgaactgaaatggctgtagctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccatttcaactccaggcttctttaatggctctttagctttgaatccagtccaaaaactgcacattacacccaaaagattagctttatctgggagtacaattgttccgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaatcgatttggattcagatccagaagcaacgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105438" stop="107031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105738" g_stop="106021" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="338" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106732" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="419" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E470212" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105738" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATT</genome_strand>
        <mrna_strand>GAACAAGCAATCTGCTTCATTTTCTAGCCCCCATAGCTTCATTTTCTTAAATATCTTTTAGTCTACTATATATCTTAAGATTAGAATAATAATACATTTTCTACTTTTTAGTGCATCTTCTTCTTTCTTGATATTATTGAACTG-AAATGGCTGTAGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCATTTCAACTCCAGGCTTCTTTAATGGCTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACATTACACCCAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCCGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATCGATTTGGATTCAGATCCAGAAGCAACGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334174" ref_strand="+" ref_description="SGN-E334174 [cTOD-21-O12]">
      <seq>aacaaacaatctgattcattttctagcccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggagcaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaaagctttcggtgtttttcaaccatatcagaaagattgacgtggacatagcgacccatatccatgtttatgacgatgctcctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105439" stop="108015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105739" g_stop="106021" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="338" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106648" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.404" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106649" g_stop="106777" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="467" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="562" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="647" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="709" r_length="62" r_score="0.933"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107665" g_stop="107715" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="760" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E334174" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105739" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106649" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAG-AAGCTTTCGGTGTTTTTCAACCATATCAG-AAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAA</genome_strand>
        <mrna_strand>AACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG.......................................................................................................CAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAAGCTTTCGGTGTTTTTCAACCATATCAGAAAG....................................................................................................................................................................................................................................................................................ATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260530" ref_strand="+" ref_description="SGN-E260530 [cLEG-54-K4]">
      <seq>aacaaacaatctgattcattttctagcccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacggggtagggaaggtcgatgatccagagctgcttgaagcaanttcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatggaagaaagctttcggtgtttttcaccatatcaagaagattgacgtggacatagcgacccatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105439" stop="107991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105739" g_stop="106021" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="338" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="464" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="559" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="647" r_length="88" r_score="0.929"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="708" r_length="61" r_score="0.900"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107665" g_stop="107691" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="735" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E260530" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105739" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTAC-GGGTA-GGAAGGTCGATGATCCAGAGCTGCTTGAAGCAA-TTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAG-AAGCTTTCGGTGTTTTTCAACCATATC-AGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATC</genome_strand>
        <mrna_strand>AACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGGTAGGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAANTTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGAAGAAAGCTTTCGGTGTTTTTC-ACCATATCAAGAAG....................................................................................................................................................................................................................................................................................ATTGACGTGGACATAGCGACCCATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326487" ref_strand="+" ref_description="SGN-E326487 [cTOC-17-C9]">
      <seq>aacaaacaatctgattcattttctagcccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaagctttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105439" stop="107665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105739" g_stop="106021" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="338" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="464" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="559" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="644" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107329" g_stop="107365" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="681" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E326487" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105739" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCG</genome_strand>
        <mrna_strand>AACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317743" ref_strand="+" ref_description="SGN-E317743 [cTOA-30-G17]">
      <seq>aacaaacaatctgattcattttctagcccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaaagcattcgtttgacgatcatncataatatgatggaataccacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105439" stop="107525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105739" g_stop="106021" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="338" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="464" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="559" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107225" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="642" r_length="83" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E317743" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105739" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACC</genome_strand>
        <mrna_strand>AACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAAGCATTCGTTTGACGATCATNCATAATATGATGGAATACCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316427" ref_strand="+" ref_description="SGN-E316427 [cTOA-25-P1]">
      <seq>aacaaacaatctgattcattttctagcccctatagcttcattanctccaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtangaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105439" stop="107518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105739" g_stop="106021" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="338" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="464" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="559" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107218" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="635" r_length="76" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E316427" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105739" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAA</genome_strand>
        <mrna_strand>AACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATTANCTCCAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTANGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254640" ref_strand="+" ref_description="SGN-E254640 [cLEG-29-A12]">
      <seq>aacaaacaatctgattcattttctagcccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccaaagctgcttgaaacaattcgtttgacgatcatcaataatatgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105439" stop="107517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105739" g_stop="106021" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="338" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="464" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="559" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107217" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="634" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E254640" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105739" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGA</genome_strand>
        <mrna_strand>AACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAAAGCTGCTTGAAACAATTCGTTTGACGATCATCAATAATATGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257763" ref_strand="+" ref_description="SGN-E257763 [cLEG-39-J2]">
      <seq>aacaaacaatctgattcattttctagcccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105439" stop="107176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105739" g_stop="106021" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="338" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="464" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106876" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="481" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E257763" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105739" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAA</genome_strand>
        <mrna_strand>AACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300370" ref_strand="+" ref_description="SGN-E300370 [cLET-45-A23]">
      <seq>aaacaatctgattcattttctagcccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttgcaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105442" stop="107254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105742" g_stop="106021" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="335" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="461" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="556" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E300370" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105742" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC</genome_strand>
        <mrna_strand>AAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTGCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437597" ref_strand="+" ref_description="SGN-E437597 [cSTA-4-G2]">
      <seq>caatctgcttcattttctagcccccatagcttcattttcttaaatatctttttgtctactatatatcttaagattagaataggaatccattttctactttttagtgcatcttcttctttcttgatattattgaactgaaatggctgtggctatggtttcttgtggaatgcccactagtttaaaacttatagagaagcaacccatttcaactccaggcttctttaatggctctttagctttgaatccagtccaaaaactgcacattacacccaaaagattagctttttctgggagtacaattattcctaaagcatcggttacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaatcgatttggattcagatccagaagcaacgatcgtagaggttacctttggggatcgccttggggcacttctcgacacaatgaatgcattaaaaaaccttgggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105445" stop="107186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105745" g_stop="106021" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="331" r_length="55" r_score="0.909"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="457" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106886" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="484" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E437597" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105745" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTG</genome_strand>
        <mrna_strand>CAATCTGCTTCATTTTCTAGCCCCCATAGCTTCATTTTCTTAAATATCTTTTTGTCTACTATATATCTTAAGATTAGAATAGGAATCCATTTTCTACTTTTTAGTGCATCTTCTTCTTTCTTGATATTATTGAACTG-AAATGGCTGTGGCTATGGTTTCTTGTGGAATGCCCACTAGTTTAAAACTTATAGAGAAGCAACCCATTTCAACTCCAGGCTTCTTTAATGGCTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACATTACACCCAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTTTCTGGGAGTACAATTATTCCTAAAGCATCGGTTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATCGATTTGGATTCAGATCCAGAAGCAACGATCGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACA..................................................................................ATGAATGCATTAAAAAACCTTGGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272950" ref_strand="+" ref_description="SGN-E272950 [cLEM-25-C9]">
      <seq>caatctgattcattttctagcccctatcgcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgaggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctctatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcaaatccacaagcaacgattgtagaggttacctttggggatcgccttggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105445" stop="107064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105745" g_stop="106021" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="332" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106764" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="445" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E272950" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105745" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGC</genome_strand>
        <mrna_strand>CAATCTGATTCATTTTCTAGCCCCTATCGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGAGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTCTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAAATCCACAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339647" ref_strand="+" ref_description="SGN-E339647 [cTOE-16-A9]">
      <seq>ctgattcattttctagcccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105449" stop="107535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105749" g_stop="106021" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="328" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="454" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="549" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="634" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107329" g_stop="107334" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="640" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E339647" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105749" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCT</genome_strand>
        <mrna_strand>CTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290390" ref_strand="+" ref_description="SGN-E290390 [cLES-20-M6]">
      <seq>cattttctagcccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105455" stop="107067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105755" g_stop="106021" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="322" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106767" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="438" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E290390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105755" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACT</genome_strand>
        <mrna_strand>CATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281421" ref_strand="-" ref_description="SGN-E281421 [cLEL-1-G17](-)">
      <seq>aagaattggcacgagattttctagcccctatagcttcatctttttaaatatcttttgctctactatatatggtaagataagaataggaataaagttntcactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105456" stop="106823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105756" g_stop="106021" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="281" r_length="266" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106523" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="314" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E281421" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281421" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105756" e_stop="106021"/>
          <exon e_start="106491" e_stop="106523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAA</genome_strand>
        <mrna_strand>ATTTTCTAGCCCCTATAGCTTCATCTTTTTAAATATCTTTTGCTCTACTATATATGGTAAGATAAGAATAGGAATAAAGTTNTCACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302373" ref_strand="+" ref_description="SGN-E302373 [cLEW-27-M4]">
      <seq>ttttctagcccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcgtaagttcatgttgttggttcctttgtgctgctaggtgatttttctgtttctcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105457" stop="107311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105757" g_stop="106021" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="320" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="446" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="107011" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="598" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E302373" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105757" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="107011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTAT</genome_strand>
        <mrna_strand>TTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248040" ref_strand="+" ref_description="SGN-E248040 [cLEF-47-M22]">
      <seq>ttttctagcccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105457" stop="107251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105757" g_stop="106021" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="320" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="446" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106951" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="538" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E248040" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105757" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAA</genome_strand>
        <mrna_strand>TTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348678" ref_strand="+" ref_description="SGN-E348678 [cTOF-30-N1]">
      <seq>cccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccngaatctagctccagattagctatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105465" stop="107654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105765" g_stop="106021" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="312" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="438" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="533" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="618" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107329" g_stop="107354" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="644" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E348678" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105765" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGG</genome_strand>
        <mrna_strand>CCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCN.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289900" ref_strand="+" ref_description="SGN-E289900 [cLET-9-I2]">
      <seq>cttcatcttcttaaatatcttttgctctactatatatctgaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattatcgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaattcagtccaaaaactgcacgttacacccaagagattatctttatctgggagtacaattgctctgaaagcatccgctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtgattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgagctgaatgttgtcaacgctaatgtctgtcttgattcatctgggaagcataacacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105474" stop="107239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105774" g_stop="106021" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="303" r_length="55" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="429" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106939" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="509" r_length="80" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E289900" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105774" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATT</genome_strand>
        <mrna_strand>CTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTGAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATCGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATTCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCTTTATCTGGGAGTACAATTGCTCTGAAAGCATCCGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTGATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGAGCTGAATGTTGTCAACGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468968" ref_strand="+" ref_description="SGN-E468968 [cSTB-10-A23]">
      <seq>ttaagattagaataggaatccattttctactttttagtgcatcttcttctttcttgatattattgaactgaaatggctgtggctatggtttcttgtggaatgcccactagtttaaaacttatagagaagcaacccatttcaactccaggcttctttaatggctctttagctttgaatccagtccaaaaactgcacattacacccaaaagattagctttttctgggagtaccaattattcctaaagcatcggttacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaatcgatttggattcagatccagaagcaacgatcgtagaggttacctttggggatcgccttggggcacttctcgacacaatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtatgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcaatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105512" stop="107517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105812" g_stop="106021" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="0.873"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="0.86"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="391" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="486" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.729" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107217" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="561" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E468968" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105812" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTA-CAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGA</genome_strand>
        <mrna_strand>TTAAGATTAGAATAGGAATCCATTTTCTACTTTTTAGTGCATCTTCTTCTTTCTTGATATTATTGAACTG-AAATGGCTGTGGCTATGGTTTCTTGTGGAATGCCCACTAGTTTAAAACTTATAGAGAAGCAACCCATTTCAACTCCAGGCTTCTTTAATGGCTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACATTACACCCAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTTTCTGGGAGTACCAATTATTCCTAAAGCATCGGTTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATCGATTTGGATTCAGATCCAGAAGCAACGATCGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACA..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTATGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCAATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291959" ref_strand="+" ref_description="SGN-E291959 [cLET-7-G8]">
      <seq>taagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaagctttcggtgtttttcaaccatatcagaagattgacgtggacatagcgacccatatccatgtttatgacgatgctcctgaaagaagtttactctgtgtagagacagcagacagacctggactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105513" stop="108177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105813" g_stop="106021" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="264" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="390" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="485" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="570" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="630" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107665" g_stop="107720" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="686" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="107721" i_stop="107839" i_length="119">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="107840" g_stop="107877" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="724" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E291959" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105813" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107720"/>
          <exon e_start="107840" e_stop="107877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAGGTAAGATCATATTCCCATTGCTTGGTTTTGATCAGTAAATACTGATACTGATCAACCTCATTAAGTGATCCATTTAGTGCACAACTATAAGAGAATAATAAAATGCCTCTATTTTGCAGTTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGA</genome_strand>
        <mrna_strand>TAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAG....................................................................................................................................................................................................................................................................................ATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG.......................................................................................................................TTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692415" ref_strand="+" ref_description="SGN-E692415 [LH_Ea08K13]">
      <seq>tgttttctactttttattgcatcctcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccatttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattattccgaaagcatcggctacagctgtggaggatggaagttcacaagaaactgctgcagttccaacacccaaagttgttattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaagcttttggtgtttttcaaccatatcagaagattgacgtggacatagcaacccatatccatgtttatgacgatgctcctgaaagaagtttactctgtgtagagacagcagacagacctggactgatagttgatcttgtcaagaccattactgacataaacgttgatgtggaatcaggagagttcgatactgagggattgcttgctaaagcgaaatttcatgtcaactacaaaggcaaagcgttgatcaagccccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105535" stop="108433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105832" g_stop="106021" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="245" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="371" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="466" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="551" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="611" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107665" g_stop="107720" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="667" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="107721" i_stop="107839" i_length="119">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="107840" g_stop="107945" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="773" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="107946" i_stop="108069" i_length="124">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="108070" g_stop="108133" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="837" r_length="64" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E692415" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105832" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107720"/>
          <exon e_start="107840" e_stop="107945"/>
          <exon e_start="108070" e_stop="108133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAGGTAAGATCATATTCCCATTGCTTGGTTTTGATCAGTAAATACTGATACTGATCAACCTCATTAAGTGATCCATTTAGTGCACAACTATAAGAGAATAATAAAATGCCTCTATTTTGCAGTTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAGGTGAGATTTTTTCAGTCGGTTTTCCAAATCATTGCACCAAACTGTTTAGGTAGTGGCTGTGCCGTCTAATAAGTATCAACCTGCAGTAGTTAGTATTGAGTTAAAAAGTTTCATTTTGGTGTAGGGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTC</genome_strand>
        <mrna_strand>TGTTTTCTACTTTTTATTGCATCCTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCATTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTATTCCGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAAACTGCTGCAGTTCCAACACCCAAAGTTGTTATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTTGGTGTTTTTCAACCATATCAGAAG....................................................................................................................................................................................................................................................................................ATTGACGTGGACATAGCAACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG.......................................................................................................................TTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAACGTTGATGTGGAATCAGGAGAGTTCGATACTGAG............................................................................................................................GGATTGCTTGCTAAAGCGAAATTTCATGTCAACTACAAAGGCAAAGCGTTGATCAAGCCCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251843" ref_strand="+" ref_description="SGN-E251843 [cLEG-14-H9]">
      <seq>tactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcgtaagttcatgttgttggttcctttgtgctgctaggtgatttttctgtttctcttatacttgagctttgtatgttatcagtcaccagatatatgaaaacacttacgaatgaatcttttgttatgcgtctaacaacattagttccctgattgaaattctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105539" stop="107414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105839" g_stop="106021" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="238" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="364" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="107114" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="619" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E251843" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105839" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="107114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGA</genome_strand>
        <mrna_strand>TACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691408" ref_strand="+" ref_description="SGN-E691408 [LH_Ea06A14]">
      <seq>ccgtatagggcctaattcggcacgaggcttgatattatagaccttaaaagggctgcggctatggtttcttgaggaatccccactagattaaaacttatagagaagcaacccatttcaattccaggcttctttaatgggtctttaggctttgaatggaggccaaaaactgcacgttacacccaaaagattagctttatctgggagtacaattattccgaaagcatcggctacagctgtggagcaggatggaagttcacaagaaactgctgcagttccaacacccaaagttgttattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaagcttttggtgtttttcaaccatatcagaagattgacgtggacatagcaacccatatccatgtttatgacgatgctcctgaaagaagtttactctgtgtagagacagcagacagacctggactgatagttgatcttgtcaagaccattactgacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105564" stop="108210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105864" g_stop="106021" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="186" r_length="159" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="241" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106648" i_length="103">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.404" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106649" g_stop="106777" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="370" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="465" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="550" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="610" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107665" g_stop="107720" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="666" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="107721" i_stop="107839" i_length="119">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="107840" g_stop="107910" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="737" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E691408" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105864" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106649" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107720"/>
          <exon e_start="107840" e_stop="107910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTA-GCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAGGTAAGATCATATTCCCATTGCTTGGTTTTGATCAGTAAATACTGATACTGATCAACCTCATTAAGTGATCCATTTAGTGCACAACTATAAGAGAATAATAAAATGCCTCTATTTTGCAGTTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAA</genome_strand>
        <mrna_strand>CTTGATATTATAGACCTTAAAAGGGCTGCGGCTATGGTTTCTTGAGGAATCCCCACTAGATTAAAACTTATAGAGAAGCAACCCATTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGGCTTTGAATGGAGGCCAAAAACTGCACGTTACACCCAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTATTCCGAAAGCATCGGCTACAGCTGTGGAG.......................................................................................................CAGGATGGAAGTTCACAAGAAACTGCTGCAGTTCCAACACCCAAAGTTGTTATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTTGGTGTTTTTCAACCATATCAGAAG....................................................................................................................................................................................................................................................................................ATTGACGTGGACATAGCAACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG.......................................................................................................................TTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471426" ref_strand="+" ref_description="SGN-E471426 [cSTB-24-A13]">
      <seq>aaatggctgtggctatggtttcttgtggaatgcccactagtttaaaacttatagagaagcaacccatttcaactccaggcttctttaatggctctttagctttgaatccagtccaaaaactgcacattacacccaaaagattagctttttctgggagtacaattattcctaaagcatcggttacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaatcgatttggattcagatccagaagcaacgatcgtagaggttacctttggggatcgccttggggcacttctcgacacaatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtatgtcttgattcatctgggaagcataacacattcgccatcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105583" stop="107251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105883" g_stop="106021" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="194" r_length="55" r_score="0.909"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="320" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106951" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="412" r_length="92" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E471426" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105883" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAA</genome_strand>
        <mrna_strand>AAATGGCTGTGGCTATGGTTTCTTGTGGAATGCCCACTAGTTTAAAACTTATAGAGAAGCAACCCATTTCAACTCCAGGCTTCTTTAATGGCTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACATTACACCCAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTTTCTGGGAGTACAATTATTCCTAAAGCATCGGTTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATCGATTTGGATTCAGATCCAGAAGCAACGATCGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACA..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTATGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293268" ref_strand="+" ref_description="SGN-E293268 [cLET-18-I5]">
      <seq>tggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaagctttcggtgtttttcaaccatatcagaagattgacgtggacatagcgacccatatccatgtttatgacgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105592" stop="108008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105892" g_stop="106021" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="185" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="311" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="406" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="491" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="551" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107665" g_stop="107708" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="595" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E293268" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105892" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGC</genome_strand>
        <mrna_strand>TGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAG....................................................................................................................................................................................................................................................................................ATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330715" ref_strand="+" ref_description="SGN-E330715 [cTOD-8-I16]">
      <seq>cttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105604" stop="107256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105904" g_stop="106021" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="173" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="299" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="394" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107148" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="400" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E330715" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105904" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTAC</genome_strand>
        <mrna_strand>CTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257703" ref_strand="+" ref_description="SGN-E257703 [cLEG-39-O12]">
      <seq>gtggaatgcccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtcgttagctttgaatgcagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccgacacccaaagttgtgattgatttggattcacatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacaggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105607" stop="107502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105907" g_stop="106021" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="170" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="296" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="391" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107202" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="451" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E257703" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105907" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCAT</genome_strand>
        <mrna_strand>GTGGAATGCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCGTTAGCTTTGAATGCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCGACACCCAAAGTTGTGATTGATTTGGATTCACATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACAGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252701" ref_strand="+" ref_description="SGN-E252701 [cLEG-16-E20]">
      <seq>tcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggagcaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaagctttcggtgtttttcaaccacatcagaagattgacgtggacatagcgacccatatccatgtttatgacgatgctcctgaaagaagtttactctgtgtagagacagcagacagacctggactgatagttgatcttgtcaagaccattactgacataaatgttgatgttgaatcatgagagttcgatactgagggtttgcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105651" stop="108253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105951" g_stop="106021" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="126" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106648" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.404" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106649" g_stop="106777" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="255" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="350" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="435" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="495" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107665" g_stop="107720" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="551" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="107721" i_stop="107839" i_length="119">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="107840" g_stop="107945" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="657" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="107946" i_stop="108069" i_length="124">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="108070" g_stop="108080" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="668" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E252701" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105951" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106649" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107720"/>
          <exon e_start="107840" e_stop="107945"/>
          <exon e_start="108070" e_stop="108080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAGGTAAGATCATATTCCCATTGCTTGGTTTTGATCAGTAAATACTGATACTGATCAACCTCATTAAGTGATCCATTTAGTGCACAACTATAAGAGAATAATAAAATGCCTCTATTTTGCAGTTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAGGTGAGATTTTTTCAGTCGGTTTTCCAAATCATTGCACCAAACTGTTTAGGTAGTGGCTGTGCCGTCTAATAAGTATCAACCTGCAGTAGTTAGTATTGAGTTAAAAAGTTTCATTTTGGTGTAGGGTTTGCTTGC</genome_strand>
        <mrna_strand>TCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG.......................................................................................................CAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCACATCAGAAG....................................................................................................................................................................................................................................................................................ATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG.......................................................................................................................TTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCATGAGAGTTCGATACTGAG............................................................................................................................GGTTTGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252780" ref_strand="+" ref_description="SGN-E252780 [cLEG-16-L12]">
      <seq>tcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcgcgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggagcaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaagctttcggtgtttttcaaccacatcagaagattgacgtggacatagcgacccatattcatgtttatgacgatgctcctgaaagaaagttactctgtgtagagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105651" stop="108158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105951" g_stop="106021" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="126" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106648" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.404" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106649" g_stop="106777" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="255" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="350" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="435" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="495" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107665" g_stop="107720" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="551" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="107721" i_stop="107839" i_length="119">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="107840" g_stop="107858" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="570" r_length="19" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E252780" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105951" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106649" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107720"/>
          <exon e_start="107840" e_stop="107858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAGGTAAGATCATATTCCCATTGCTTGGTTTTGATCAGTAAATACTGATACTGATCAACCTCATTAAGTGATCCATTTAGTGCACAACTATAAGAGAATAATAAAATGCCTCTATTTTGCAGTTTACTCTGTGTAGAGACA</genome_strand>
        <mrna_strand>TCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCGCGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG.......................................................................................................CAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCACATCAGAAG....................................................................................................................................................................................................................................................................................ATTGACGTGGACATAGCGACCCATATTCATGTTTATGACGATGCTCCTGAAAGAAA.......................................................................................................................GTTACTCTGTGTAGAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330566" ref_strand="+" ref_description="SGN-E330566 [cTOD-8-G24]">
      <seq>taatgggtctttaactgtgaatcccgtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacatgagactgctgcagttgcaacacccaaagtaggaattgatttggattcagatccagaagcaacgattgtagaggttacctgtggggatcgccttggggcacttctcgacacgatgaatgcattataaaaccttgggctgaatgttgtcaaggctaatgtctgacttgattcatctgggaagcataacacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105668" stop="107238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105968" g_stop="106021" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="109" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="235" r_length="126" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106860" g_stop="106938" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="314" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E330566" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105968" e_stop="106021"/>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACAT</genome_strand>
        <mrna_strand>TAATGGGTCTTTAACTGTGAATCCCGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACATGAGACTGCTGCAGTTGCAACACCCAAAGTAGGAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTGTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTATAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGACTTGATTCATCTGGGAAGCATAACACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689974" ref_strand="+" ref_description="SGN-E689974 [LH_Ea02E20]">
      <seq>cgtttacacccaagagattagctttatctgggagtacaattattccgaaagcatcggctacagctgtggaggatggaagttcacaagaaactgctgcaattccaacacccaaagttgttattgatttggattcaaatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacactatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatggctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaagcttttggtgtttttcaaccatatcacaagattgacgtggacatagcaacccatatccatgtttatgacgatgctcctgaaagaagtttactctgtgtagagacagcagacagacctgcactgatagttgatcttgtcaagaccattactgacataaacgttgatgtggaatcaggagagttcgatactgagggattgcttgctaaggcgaaatttcatgtcaactacaagggcaaagcgttgatcaagccccttcaacaggttcttgcaaatagcctgcgttatttcttgaggagaccaacaacataggatgcaagtttttaatacaatgctgaaaagtgggaaattgtcaacaggattaaccaagtactttcaattttcaagataatgaagcttgctggttttagcagcaccgatccattccaaggtgtaaacagcggaaaatatgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106189" stop="108726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106491" g_stop="106545" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="71" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106652" g_stop="106777" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="197" r_length="126" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="292" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="377" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="437" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107665" g_stop="107720" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="493" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107721" i_stop="107839" i_length="119">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107840" g_stop="107945" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="599" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="107946" i_stop="108069" i_length="124">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="108070" g_stop="108138" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="668" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="108139" i_stop="108236" i_length="98">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="108237" g_stop="108426" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="859" r_length="191" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E689974" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106491" e_stop="106545"/>
          <exon e_start="106652" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107720"/>
          <exon e_start="107840" e_stop="107945"/>
          <exon e_start="108070" e_stop="108138"/>
          <exon e_start="108237" e_stop="108426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAGGTAAGATCATATTCCCATTGCTTGGTTTTGATCAGTAAATACTGATACTGATCAACCTCATTAAGTGATCCATTTAGTGCACAACTATAAGAGAATAATAAAATGCCTCTATTTTGCAGTTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAGGTGAGATTTTTTCAGTCGGTTTTCCAAATCATTGCACCAAACTGTTTAGGTAGTGGCTGTGCCGTCTAATAAGTATCAACCTGCAGTAGTTAGTATTGAGTTAAAAAGTTTCATTTTGGTGTAGGGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTCAACAGGTAACCGATGCTAAGTTACAAGCAATATACAATTTCTTTCATTAGACCTTGGTAGCTTGAAGAAAGTTATTGACAATTTTCAGTCTTGAACCTTGTAGGTTCTTGCGAATAGCCTGCGTTATTTCTTGAGGAGACCAACAACAGAGGATGCAAGTTTTTAATACAATGCTGAAAAGTGAGAAATTGTCAACAGGGTTAACCAAGTACTTTCAATTTTCAAGATAATGAAGCTTGCTGGTTTTAGCAGCACCGATCCATTCCAAGGTGTAAACAGC-GAAAATATGCTTG</genome_strand>
        <mrna_strand>ATTAGCTTTATCTGGGAGTACAATTATTCCGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAAACTGCTGCAATTCCAACACCCAAAGTTGTTATTGATTTGGATTCAAATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACT..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGGCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTTGGTGTTTTTCAACCATATCACAAG....................................................................................................................................................................................................................................................................................ATTGACGTGGACATAGCAACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG.......................................................................................................................TTTACTCTGTGTAGAGACAGCAGACAGACCTGCACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAACGTTGATGTGGAATCAGGAGAGTTCGATACTGAG............................................................................................................................GGATTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTCAACAG..................................................................................................GTTCTTGCAAATAGCCTGCGTTATTTCTTGAGGAGACCAACAACATAGGATGCAAGTTTTTAATACAATGCTGAAAAGTGGGAAATTGTCAACAGGATTAACCAAGTACTTTCAATTTTCAAGATAATGAAGCTTGCTGGTTTTAGCAGCACCGATCCATTCCAAGGTGTAAACAGCGGAAAATATGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321150" ref_strand="+" ref_description="SGN-E321150 [cTOB-13-F15]">
      <seq>gctttatctgggagttctattgttctgaaagcatcggctacagctgtggagcaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtatgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaagctttcggtgtttttcaaccatatcagaagattgacgtggacatagcgacccatatccatgtttatgacgatgctcctgaaagaagtttactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106195" stop="108024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106495" g_stop="106545" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106546" i_stop="106648" i_length="103">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.404" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106649" g_stop="106777" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="180" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="275" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="360" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="420" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107665" g_stop="107720" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="476" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107721" i_stop="107839" i_length="119">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107840" g_stop="107847" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="484" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E321150" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106495" e_stop="106545"/>
          <exon e_start="106649" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107720"/>
          <exon e_start="107840" e_stop="107847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAGGTAAGATCATATTCCCATTGCTTGGTTTTGATCAGTAAATACTGATACTGATCAACCTCATTAAGTGATCCATTTAGTGCACAACTATAAGAGAATAATAAAATGCCTCTATTTTGCAGTTTACTCT</genome_strand>
        <mrna_strand>GCTTTATCTGGGAGTTCTATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG.......................................................................................................CAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTATGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAG....................................................................................................................................................................................................................................................................................ATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG.......................................................................................................................TTTACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323474" ref_strand="+" ref_description="SGN-E323474 [cTOC-7-G7]">
      <seq>ttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaagctttcggtgtttttcaaccatatcagaagattgacgtggacatagcgacccatatccatgtttatgacgatgctcctgaaagaagtttactctgtgtagagacagcagacagacctggactgatagttgatcttgtcaagaccattactgacataaatgttgatgttgaatcaggagagttcgatactgagggtttgcttgctaaggcgaaatttcatgtcaactacaagggcaaagcgttgatcaagcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106380" stop="108430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106680" g_stop="106777" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="193" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="278" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="338" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107665" g_stop="107720" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="394" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107721" i_stop="107839" i_length="119">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107840" g_stop="107945" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="500" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107946" i_stop="108069" i_length="124">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108070" g_stop="108130" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="561" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E323474" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106680" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107720"/>
          <exon e_start="107840" e_stop="107945"/>
          <exon e_start="108070" e_stop="108130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAGGTAAGATCATATTCCCATTGCTTGGTTTTGATCAGTAAATACTGATACTGATCAACCTCATTAAGTGATCCATTTAGTGCACAACTATAAGAGAATAATAAAATGCCTCTATTTTGCAGTTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAGGTGAGATTTTTTCAGTCGGTTTTCCAAATCATTGCACCAAACTGTTTAGGTAGTGGCTGTGCCGTCTAATAAGTATCAACCTGCAGTAGTTAGTATTGAGTTAAAAAGTTTCATTTTGGTGTAGGGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCC</genome_strand>
        <mrna_strand>TTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAG....................................................................................................................................................................................................................................................................................ATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG.......................................................................................................................TTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAG............................................................................................................................GGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696255" ref_strand="+" ref_description="SGN-E696255 [LH_Ea08K13](-)">
      <seq>cagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaagcttttggtgtttttcaaccatatcagaagattgacgtggacatagcaacccatatccatgtttatgacgatgctcctgaaagaagtttactctgtgtagagacagcagacagacctggactgatagttgatcttgtcaagaccattactgacataaacgttgatgtggaatcaggagagttcgatactgagggattgcttgctaaggcgaaatttcatgtcaactacaagggcaaagcgttgatcaagccccttcaacaggttcttgcaaatagcctgcgttatttcttgaggagaccaacaacagaggatgcaagtttttaatacaatgctgaaaagtgggaaattgtcaacaggattaaccaagtactttcaattttcaagataatgaagcttgctggttttagcagcaccgatccattccaaggtgtaaacagcgaaaatatgcttgaaactcagaaaggtagcttcaatactgctgtaacaatgtagattccttaatgtatatattaatgatataagtttcagaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106413" stop="108824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106713" g_stop="106777" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="160" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="245" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="305" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107665" g_stop="107720" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="361" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107721" i_stop="107839" i_length="119">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107840" g_stop="107945" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="467" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107946" i_stop="108069" i_length="124">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108070" g_stop="108138" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="536" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="108139" i_stop="108236" i_length="98">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="108237" g_stop="108525" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="823" r_length="287" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E696255" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106713" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107720"/>
          <exon e_start="107840" e_stop="107945"/>
          <exon e_start="108070" e_stop="108138"/>
          <exon e_start="108237" e_stop="108525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAGGTAAGATCATATTCCCATTGCTTGGTTTTGATCAGTAAATACTGATACTGATCAACCTCATTAAGTGATCCATTTAGTGCACAACTATAAGAGAATAATAAAATGCCTCTATTTTGCAGTTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAGGTGAGATTTTTTCAGTCGGTTTTCCAAATCATTGCACCAAACTGTTTAGGTAGTGGCTGTGCCGTCTAATAAGTATCAACCTGCAGTAGTTAGTATTGAGTTAAAAAGTTTCATTTTGGTGTAGGGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTCAACAGGTAACCGATGCTAAGTTACAAGCAATATACAATTTCTTTCATTAGACCTTGGTAGCTTGAAGAAAGTTATTGACAATTTTCAGTCTTGAACCTTGTAGGTTCTTGCGAATAGCCTGCGTTATTTCTTGAGGAGACCAACAACAGAGGATGCAAGTTTTTAATACAATGCTGAAAAGTGAGAAATTGTCAACAGGGTTAACCAAGTACTTTCAATTTTCAAGATAATGAAGCTTGCTGGTTTTAGCAGCACCGATCCATTCCAAGGTGTAAACAGCGAAAATATGCTTGAAACTCAGAATCATAGCTTCAATACTGCTGTAACAATGTAGATTGGTACCATTTATACATTAATGATATAAGTTTTCAGAACAGGAAAACAAAAACAAT</genome_strand>
        <mrna_strand>CAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTTGGTGTTTTTCAACCATATCAGAAG....................................................................................................................................................................................................................................................................................ATTGACGTGGACATAGCAACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG.......................................................................................................................TTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAACGTTGATGTGGAATCAGGAGAGTTCGATACTGAG............................................................................................................................GGATTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTCAACAG..................................................................................................GTTCTTGCAAATAGCCTGCGTTATTTCTTGAGGAGACCAACAACAGAGGATGCAAGTTTTTAATACAATGCTGAAAAGTGGGAAATTGTCAACAGGATTAACCAAGTACTTTCAATTTTCAAGATAATGAAGCTTGCTGGTTTTAGCAGCACCGATCCATTCCAAGGTGTAAACAGCGAAAATATGCTTGAAACTCAGAAAGGTAGCTTCAATACTGCTGTAACAATGTAGATTCCT-TAATGTATATATTAATGATATAAG-TTTCAGAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696512" ref_strand="+" ref_description="SGN-E696512 [LH_Ea09F06](-)">
      <seq>cagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaagcttttggtgtttttcaaccatatcagaagattgacgtggacatagcaacccatatccatgtttatgacgatgctcctgaaagaagtttactctgtgtagagacagcagacagacctggactgatagttgatcttgtcaagaccattactgacataaacgttgatgtggaatcaggagagttcgatactgagggattgcttgctaaggcgaaatttcatgtcaactacaagggcaaagcgttgatcaagccccttcaacaggttcttgcaaatagcctgcgttatttcttgaggagaccaacaacagaggatgcaagtttttaatacaatgctgaaaagtgggaaattgtcaacaggattaaccaagtactttcaattttcaagataatgaagcttgctggttttagcagcaccgatccattccaaggtgtaaacagcgaaaatatgcttgaaactcagaatcataggttcaatactgctgtaacaatgtagattggtcctaaaaggatattaatgatataagttttcagaacaggaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106419" stop="108824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106719" g_stop="106777" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="154" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="239" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="299" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107665" g_stop="107720" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="355" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107721" i_stop="107839" i_length="119">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107840" g_stop="107945" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="461" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107946" i_stop="108069" i_length="124">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108070" g_stop="108138" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="530" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="108139" i_stop="108236" i_length="98">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="108237" g_stop="108525" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="819" r_length="289" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E696512" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106719" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107720"/>
          <exon e_start="107840" e_stop="107945"/>
          <exon e_start="108070" e_stop="108138"/>
          <exon e_start="108237" e_stop="108525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAGGTAAGATCATATTCCCATTGCTTGGTTTTGATCAGTAAATACTGATACTGATCAACCTCATTAAGTGATCCATTTAGTGCACAACTATAAGAGAATAATAAAATGCCTCTATTTTGCAGTTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAGGTGAGATTTTTTCAGTCGGTTTTCCAAATCATTGCACCAAACTGTTTAGGTAGTGGCTGTGCCGTCTAATAAGTATCAACCTGCAGTAGTTAGTATTGAGTTAAAAAGTTTCATTTTGGTGTAGGGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTCAACAGGTAACCGATGCTAAGTTACAAGCAATATACAATTTCTTTCATTAGACCTTGGTAGCTTGAAGAAAGTTATTGACAATTTTCAGTCTTGAACCTTGTAGGTTCTTGCGAATAGCCTGCGTTATTTCTTGAGGAGACCAACAACAGAGGATGCAAGTTTTTAATACAATGCTGAAAAGTGAGAAATTGTCAACAGGGTTAACCAAGTACTTTCAATTTTCAAGATAATGAAGCTTGCTGGTTTTAGCAGCACCGATCCATTCCAAGGTGTAAACAGCGAAAATATGCTTGAAACTCAGAATCATAGCTTCAATACTGCTGTAACAATGTAGATTGGTACCATTTATACATTAATGATATAAGTTTTCAGAACAGGAAAACAAAAACAAT</genome_strand>
        <mrna_strand>CAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTTGGTGTTTTTCAACCATATCAGAAG....................................................................................................................................................................................................................................................................................ATTGACGTGGACATAGCAACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG.......................................................................................................................TTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAACGTTGATGTGGAATCAGGAGAGTTCGATACTGAG............................................................................................................................GGATTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTCAACAG..................................................................................................GTTCTTGCAAATAGCCTGCGTTATTTCTTGAGGAGACCAACAACAGAGGATGCAAGTTTTTAATACAATGCTGAAAAGTGGGAAATTGTCAACAGGATTAACCAAGTACTTTCAATTTTCAAGATAATGAAGCTTGCTGGTTTTAGCAGCACCGATCCATTCCAAGGTGTAAACAGCGAAAATATGCTTGAAACTCAGAATCATAGGTTCAATACTGCTGTAACAATGTAGATTGGTCCTAAAAGGATATTAATGATATAAGTTTTCAGAACAGGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711572" ref_strand="+" ref_description="SGN-E711572 [FB02BE03]">
      <seq>ccatattaagagaggttannnttggggatcgccttggggcacccctcaacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgccaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaagctttcggtgtttttcaaccatatcagaagattgacgtggacatagcgacccatatccatgtttatgacgatgctcctgaaagaagtttactctgtgtagagacagcagacagacctggactgatagttgatcttgtcaagaccattactgacataaatgttgatgttgaatcaggagagttcgatactgagggtttgcttgctaaggcgaaatttcatgtcaactacaagggcaaagcgttgatcaagccccttcaacaggttcttgcgaatagcctgcgttatttcttgaggagaccaacaacagaggatgcaagtttttaatacaatgctgaaaagtgagaaattgtcaacagggttaaccaagtaactttcaattttcaagataatgaagcttgctggttttaacagcaccgatccattccaaggtgtaaacagcgaaaatatgcttgaaactccaaatcatagcttcaatactgctgtaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106446" stop="108763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106725" g_stop="106777" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.755"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82">
            <donor d_prob="1.000" d_score="0.76"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106860" g_stop="106954" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="148" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="233" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="293" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107665" g_stop="107720" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="349" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107721" i_stop="107839" i_length="119">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107840" g_stop="107945" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="455" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107946" i_stop="108069" i_length="124">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108070" g_stop="108138" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="524" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="108139" i_stop="108236" i_length="98">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="108237" g_stop="108463" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="752" r_length="228" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E711572" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106725" e_stop="106777"/>
          <exon e_start="106860" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107720"/>
          <exon e_start="107840" e_stop="107945"/>
          <exon e_start="108070" e_stop="108138"/>
          <exon e_start="108237" e_stop="108463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAGGTAAGATCATATTCCCATTGCTTGGTTTTGATCAGTAAATACTGATACTGATCAACCTCATTAAGTGATCCATTTAGTGCACAACTATAAGAGAATAATAAAATGCCTCTATTTTGCAGTTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAGGTGAGATTTTTTCAGTCGGTTTTCCAAATCATTGCACCAAACTGTTTAGGTAGTGGCTGTGCCGTCTAATAAGTATCAACCTGCAGTAGTTAGTATTGAGTTAAAAAGTTTCATTTTGGTGTAGGGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTCAACAGGTAACCGATGCTAAGTTACAAGCAATATACAATTTCTTTCATTAGACCTTGGTAGCTTGAAGAAAGTTATTGACAATTTTCAGTCTTGAACCTTGTAGGTTCTTGCGAATAGCCTGCGTTATTTCTTGAGGAGACCAACAACAGAGGATGCAAGTTTTTAATACAATGCTGAAAAGTGAGAAATTGTCAACAGGGTTAACCAAGT-ACTTTCAATTTTCAAGATAATGAAGCTTGCTGGTTTTAGCAGCACCGATCCATTCCAAGGTGTAAACAGCGAAAATATGCTTGAAACTCAGAATCATAGCTTCAATACTGCTGTAACAAT</genome_strand>
        <mrna_strand>CCATATTAAGAGAGGTTANNNTTGGGGATCGCCTTGGGGCACCCCTCAACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGCCAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAG....................................................................................................................................................................................................................................................................................ATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG.......................................................................................................................TTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAG............................................................................................................................GGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTCAACAG..................................................................................................GTTCTTGCGAATAGCCTGCGTTATTTCTTGAGGAGACCAACAACAGAGGATGCAAGTTTTTAATACAATGCTGAAAAGTGAGAAATTGTCAACAGGGTTAACCAAGTAACTTTCAATTTTCAAGATAATGAAGCTTGCTGGTTTTAACAGCACCGATCCATTCCAAGGTGTAAACAGCGAAAATATGCTTGAAACTCCAAATCATAGCTTCAATACTGCTGTAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370213" ref_strand="+" ref_description="SGN-E370213 [TUS-28-C2]">
      <seq>aaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaagctttcggtgtttttcaaccatatcagaagattgacgtggacatagcgacccatatccatgtttatgacgatgctcctgaaagaagtttactctgtgtagagacagcagacagacctggactgatagttgatcttgtcaagaccattactgacataaatgttgatgttgaatcaggagagttcgatactgagggtttgcttgctaaggcgaaatttcatgtcaactacaagggcaaagcgttgatcaagccccttcaacaggttcttgcgaatagcctgcgttatttcttgaggagaccaacaacagaggatgcaagtttttaatacaatgctgaaaagtgagaaattgtcaacagggttaaccaagtactttcaattttcaagataatgaagcttgctggttttagcagcaccgatccattccaaggtgtaaacagcgaaaatatgcttgaaactcagaatcatagcttcaatactgctgtaacaatgtagattggtacccattatacattaatgatataagtttttagaacaggaaaacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106572" stop="108824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106872" g_stop="106954" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="168" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="228" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107665" g_stop="107720" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="284" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107721" i_stop="107839" i_length="119">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107840" g_stop="107945" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="390" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107946" i_stop="108069" i_length="124">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108070" g_stop="108138" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="459" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108139" i_stop="108236" i_length="98">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108237" g_stop="108532" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="755" r_length="296" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E370213" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106872" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107720"/>
          <exon e_start="107840" e_stop="107945"/>
          <exon e_start="108070" e_stop="108138"/>
          <exon e_start="108237" e_stop="108532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAGGTAAGATCATATTCCCATTGCTTGGTTTTGATCAGTAAATACTGATACTGATCAACCTCATTAAGTGATCCATTTAGTGCACAACTATAAGAGAATAATAAAATGCCTCTATTTTGCAGTTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAGGTGAGATTTTTTCAGTCGGTTTTCCAAATCATTGCACCAAACTGTTTAGGTAGTGGCTGTGCCGTCTAATAAGTATCAACCTGCAGTAGTTAGTATTGAGTTAAAAAGTTTCATTTTGGTGTAGGGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTCAACAGGTAACCGATGCTAAGTTACAAGCAATATACAATTTCTTTCATTAGACCTTGGTAGCTTGAAGAAAGTTATTGACAATTTTCAGTCTTGAACCTTGTAGGTTCTTGCGAATAGCCTGCGTTATTTCTTGAGGAGACCAACAACAGAGGATGCAAGTTTTTAATACAATGCTGAAAAGTGAGAAATTGTCAACAGGGTTAACCAAGTACTTTCAATTTTCAAGATAATGAAGCTTGCTGGTTTTAGCAGCACCGATCCATTCCAAGGTGTAAACAGCGAAAATATGCTTGAAACTCAGAATCATAGCTTCAATACTGCTGTAACAATGTAGATTGGTACCATTTATACATTAATGATATAAGTTTTCAGAACAGGAAAACAAAAACAATTATCAGT</genome_strand>
        <mrna_strand>AAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAG....................................................................................................................................................................................................................................................................................ATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG.......................................................................................................................TTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAG............................................................................................................................GGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTCAACAG..................................................................................................GTTCTTGCGAATAGCCTGCGTTATTTCTTGAGGAGACCAACAACAGAGGATGCAAGTTTTTAATACAATGCTGAAAAGTGAGAAATTGTCAACAGGGTTAACCAAGTACTTTCAATTTTCAAGATAATGAAGCTTGCTGGTTTTAGCAGCACCGATCCATTCCAAGGTGTAAACAGCGAAAATATGCTTGAAACTCAGAATCATAGCTTCAATACTGCTGTAACAATGTAGATTGGTACCCATTATACATTAATGATATAAGTTTTTAGAACAGGAAAACAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270706" ref_strand="+" ref_description="SGN-E270706 [cLEM-6-D19]">
      <seq>aaaaaccttgggctgaatgttgtcaaagctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaagctttcggtgtttttcaaccatatcagaagattgacgtggacatagcgacccatatccatgtttatgacgatgctcctgaaagaagtttactctgtgtagagacagcagacagacctggactgatagttgatcttgtcaagaccattactgacataaatgttgatgttgaatcaagagagttcgatactgagggtttgcttgctaaagcgaaatttcatgtcaactacaaaggcaaagcgttgatcaagccccttcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106572" stop="108436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106872" g_stop="106954" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="168" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="228" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107665" g_stop="107720" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="284" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107721" i_stop="107839" i_length="119">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107840" g_stop="107945" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="390" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107946" i_stop="108069" i_length="124">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108070" g_stop="108136" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="457" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E270706" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106872" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107720"/>
          <exon e_start="107840" e_stop="107945"/>
          <exon e_start="108070" e_stop="108136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAGGTAAGATCATATTCCCATTGCTTGGTTTTGATCAGTAAATACTGATACTGATCAACCTCATTAAGTGATCCATTTAGTGCACAACTATAAGAGAATAATAAAATGCCTCTATTTTGCAGTTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAGGTGAGATTTTTTCAGTCGGTTTTCCAAATCATTGCACCAAACTGTTTAGGTAGTGGCTGTGCCGTCTAATAAGTATCAACCTGCAGTAGTTAGTATTGAGTTAAAAAGTTTCATTTTGGTGTAGGGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTCAAC</genome_strand>
        <mrna_strand>AAAAACCTTGGGCTGAATGTTGTCAAAGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAG....................................................................................................................................................................................................................................................................................ATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG.......................................................................................................................TTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAAGAGAGTTCGATACTGAG............................................................................................................................GGTTTGCTTGCTAAAGCGAAATTTCATGTCAACTACAAAGGCAAAGCGTTGATCAAGCCCCTTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693814" ref_strand="+" ref_description="SGN-E693814 [LH_Ea02E20](-)">
      <seq>attcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaatcccccccggaatctagctccagattagctatgggagaagcttttggtgtttttcacccatatcagaagattgaggtggacatagcaacccatatccatgtttatgacgatgctcctgaaagaagtttactctgtgtagagacagcagacagacctggactgatagttgatcttgtcaagaccattactgccataaccgttgatgtggaatcaggagagttcgatactgagggattgcttgctaaggggaaatttcatgtcaactacaagggcaaagcgttgatcaagccccttcaacaggttcttgcaaatagcctgcgttattttttgaggagaccaacaacagaggatgcaagtttttaatacaatgctgaaaagtgggaaattgtcaacaggattacccaagtcctttcaattttcaagataatgaagcttgctggttttagcagccccgatccattccaaggtgtaaccagcgaaaatatgcttgaaactcagaatcatagcttcaatactgcggtaacaatgtagattggtcctatttatatattaataaaaggagttttcagaccgggaaaccaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106615" stop="108824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106915" g_stop="106954" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="125" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="185" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107665" g_stop="107720" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="241" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107721" i_stop="107839" i_length="119">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107840" g_stop="107945" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="347" r_length="106" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107946" i_stop="108069" i_length="124">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108070" g_stop="108138" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="416" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108139" i_stop="108236" i_length="98">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108237" g_stop="108523" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="703" r_length="287" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="704" polyA_stop="720"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E693814" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106915" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107720"/>
          <exon e_start="107840" e_stop="107945"/>
          <exon e_start="108070" e_stop="108138"/>
          <exon e_start="108237" e_stop="108523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAGGTAAGATCATATTCCCATTGCTTGGTTTTGATCAGTAAATACTGATACTGATCAACCTCATTAAGTGATCCATTTAGTGCACAACTATAAGAGAATAATAAAATGCCTCTATTTTGCAGTTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAGGTGAGATTTTTTCAGTCGGTTTTCCAAATCATTGCACCAAACTGTTTAGGTAGTGGCTGTGCCGTCTAATAAGTATCAACCTGCAGTAGTTAGTATTGAGTTAAAAAGTTTCATTTTGGTGTAGGGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTCAACAGGTAACCGATGCTAAGTTACAAGCAATATACAATTTCTTTCATTAGACCTTGGTAGCTTGAAGAAAGTTATTGACAATTTTCAGTCTTGAACCTTGTAGGTTCTTGCGAATAGCCTGCGTTATTTCTTGAGGAGACCAACAACAGAGGATGCAAGTTTTTAATACAATGCTGAAAAGTGAGAAATTGTCAACAGGGTTAACCAAGTACTTTCAATTTTCAAGATAATGAAGCTTGCTGGTTTTAGCAGCACCGATCCATTCCAAGGTGTAAACAGCGAAAATATGCTTGAAACTCAGAATCATAGCTTCAATACTGCTGTAACAATGTAGATTGGTACCATTTATACATTAATGATATAAGTTTTCAGAACAGGAAAACAAAAACA</genome_strand>
        <mrna_strand>ATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATCCCCCCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTTGGTGTTTTTCACCCATATCAGAAG....................................................................................................................................................................................................................................................................................ATTGAGGTGGACATAGCAACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG.......................................................................................................................TTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGCCATAACCGTTGATGTGGAATCAGGAGAGTTCGATACTGAG............................................................................................................................GGATTGCTTGCTAAGGGGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTCAACAG..................................................................................................GTTCTTGCAAATAGCCTGCGTTATTTTTTGAGGAGACCAACAACAGAGGATGCAAGTTTTTAATACAATGCTGAAAAGTGGGAAATTGTCAACAGGATTACCCAAGTCCTTTCAATTTTCAAGATAATGAAGCTTGCTGGTTTTAGCAGCCCCGATCCATTCCAAGGTGTAACCAGCGAAAATATGCTTGAAACTCAGAATCATAGCTTCAATACTGCGGTAACAATGTAGATTGGTCCTATTTATATATTAATAAAAGGAGTTTTCAGACCGGGAAACCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370212" ref_strand="+" ref_description="SGN-E370212 [TUS-28-C2](-)">
      <seq>gggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaagctttcggtgtttttcaaccatatcagaagattgacgtggacatagcgacccatatccatgtttatgacgatgctcctgaaagaagtttactctgtgtagagacagcagacagacctggactgatagttgatcttgtcaagaccattactgacataaatgttgatgttgaatcaggagagttcgatactgagggtttgcttgctaaggcgaaatttcatgtcaactacaagggcaaagcgttgatcaagccccttcaacaggttcttgcgaatagcctgcgttatttcttgaggagaccaacaacagaggatgcaagtttttaatacaatgctgaaaagtgagaaattgtcaacagggttaaccaagtactttcaattttcaagataatgaagcttgctggttttagcagcaccgatccattccaaggtgtaaacagcgaaaatatgcttgaaactcagaatcatagcttcaatactgctgtaacaatgtagattggtaccatttatacattaatgatataagttttcagaacaggaaaacaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106623" stop="108824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106923" g_stop="106954" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107143" g_stop="107227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="117" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107329" g_stop="107388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="177" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276">
            <donor d_prob="0.084" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107665" g_stop="107720" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="233" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107721" i_stop="107839" i_length="119">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107840" g_stop="107945" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="339" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107946" i_stop="108069" i_length="124">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108070" g_stop="108138" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="408" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108139" i_stop="108236" i_length="98">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108237" g_stop="108523" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="695" r_length="287" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="696" polyA_stop="713"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E370212" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106923" e_stop="106954"/>
          <exon e_start="107143" e_stop="107227"/>
          <exon e_start="107329" e_stop="107388"/>
          <exon e_start="107665" e_stop="107720"/>
          <exon e_start="107840" e_stop="107945"/>
          <exon e_start="108070" e_stop="108138"/>
          <exon e_start="108237" e_stop="108523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAGGTAAGATCATATTCCCATTGCTTGGTTTTGATCAGTAAATACTGATACTGATCAACCTCATTAAGTGATCCATTTAGTGCACAACTATAAGAGAATAATAAAATGCCTCTATTTTGCAGTTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAGGTGAGATTTTTTCAGTCGGTTTTCCAAATCATTGCACCAAACTGTTTAGGTAGTGGCTGTGCCGTCTAATAAGTATCAACCTGCAGTAGTTAGTATTGAGTTAAAAAGTTTCATTTTGGTGTAGGGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTCAACAGGTAACCGATGCTAAGTTACAAGCAATATACAATTTCTTTCATTAGACCTTGGTAGCTTGAAGAAAGTTATTGACAATTTTCAGTCTTGAACCTTGTAGGTTCTTGCGAATAGCCTGCGTTATTTCTTGAGGAGACCAACAACAGAGGATGCAAGTTTTTAATACAATGCTGAAAAGTGAGAAATTGTCAACAGGGTTAACCAAGTACTTTCAATTTTCAAGATAATGAAGCTTGCTGGTTTTAGCAGCACCGATCCATTCCAAGGTGTAAACAGCGAAAATATGCTTGAAACTCAGAATCATAGCTTCAATACTGCTGTAACAATGTAGATTGGTACCATTTATACATTAATGATATAAGTTTTCAGAACAGGAAAACAAAAACA</genome_strand>
        <mrna_strand>GGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAG....................................................................................................................................................................................................................................................................................ATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG.......................................................................................................................TTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAG............................................................................................................................GGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTCAACAG..................................................................................................GTTCTTGCGAATAGCCTGCGTTATTTCTTGAGGAGACCAACAACAGAGGATGCAAGTTTTTAATACAATGCTGAAAAGTGAGAAATTGTCAACAGGGTTAACCAAGTACTTTCAATTTTCAAGATAATGAAGCTTGCTGGTTTTAGCAGCACCGATCCATTCCAAGGTGTAAACAGCGAAAATATGCTTGAAACTCAGAATCATAGCTTCAATACTGCTGTAACAATGTAGATTGGTACCATTTATACATTAATGATATAAGTTTTCAGAACAGGAAAACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687682" ref_strand="+" ref_description="SGN-E687682 [T3_tus_79_G23]">
      <seq>cgtttgtttctagttctacgggtaggaaggtcgatgatccatagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggtagaacttcaataagttattgagcatcagttgcttgatctggtacctcctgagggattcttatatagctgcttcttcttactgcataatttctgatgcaggaatctagctccagattagctatgggagaagctttcggtgtttttcaaccatatcagaaggttgttaatagcctatatatgctgtcctcgcctccagtgtgtgtatacaccgttaagtagattatgcacatctgtattggttattttgaacatgtgggagtggggggttgttttctgaatgtgcgaggttcctgctagtccttgcatcatagtaacgactaatagctttctttctagtacaaatttgatacagaaactaaggcttgatgtacataaactttcatatcaatcatttaacttaaatcttactttgttgtttatgctgaaaattttcagattgacgtggacatagcgacccatatccatgtttatgacgatgctcctgaaagaagtttactctgtgtagagacagcagacagacctggactgatagttgatcttgtcaagaccattactgacataaatgttgatgttgaatcaggagagttcgatactgagggtttgcttgctaaggcgaaatttcatgtcaactacaaagggcaaagcgttgatcaagccccttcaacaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106833" stop="108440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107130" g_stop="107720" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107721" i_stop="107839" i_length="119">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107840" g_stop="107945" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="697" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107946" i_stop="108069" i_length="124">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108070" g_stop="108138" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="767" r_length="70" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E687682" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107130" e_stop="107720"/>
          <exon e_start="107840" e_stop="107945"/>
          <exon e_start="108070" e_stop="108138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAGGTAAGATCATATTCCCATTGCTTGGTTTTGATCAGTAAATACTGATACTGATCAACCTCATTAAGTGATCCATTTAGTGCACAACTATAAGAGAATAATAAAATGCCTCTATTTTGCAGTTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAGGTGAGATTTTTTCAGTCGGTTTTCCAAATCATTGCACCAAACTGTTTAGGTAGTGGCTGTGCCGTCTAATAAGTATCAACCTGCAGTAGTTAGTATTGAGTTAAAAAGTTTCATTTTGGTGTAGGGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTAC-AAGGGCAAAGCGTTGATCAAGCCCCTTCAACAG</genome_strand>
        <mrna_strand>CGTTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCATAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG.......................................................................................................................TTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAG............................................................................................................................GGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAAGGGCAAAGCGTTGATCAAGCCCCTTCAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322009" ref_strand="+" ref_description="SGN-E322009 [cTOB-29-L21]">
      <seq>ttgtttctagttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggtagaacttcaataagttattgagcatcagttgcttgatctggtacctcctgagggattcttatatagctgcttcttcttactgcataatttctgatgcaggaatctagctccagattagctatgggagaagctttcggtgtttttcaaccatatcagaaggttgttaatagcctatatatgctgtcctcgcctccagtgtgtgtatacaccgttaagtagattatgcacatctgtattggttattttgaacatgtgggagtggggggttgttttctgaatgtgcgaggttcctgctagtccttgcatcatagtaacgactaatagctttctttctagtacaaatttgatacagaaactaaggcttgatgtacataaactttcatatcaatcatttaacttaaatcttactttgttgtttatgctgaaaattttcagattgacgtggacatagcgacccatatccatgtttatgacgatgctcctgaaagaagtttactctgtgtagagacagcagacagacctggactgatagttgatcttgtncagaccattactgacataaatgttgatgttgaatcaggagagttcgatactgagggtttgcttgctaaggcgaatttcatgtcaactacaagggccaagcgttgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106833" stop="108424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107133" g_stop="107720" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107721" i_stop="107839" i_length="119">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107840" g_stop="107945" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="694" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107946" i_stop="108069" i_length="124">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108070" g_stop="108124" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="748" r_length="54" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E322009" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107133" e_stop="107720"/>
          <exon e_start="107840" e_stop="107945"/>
          <exon e_start="108070" e_stop="108124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAGGTAAGATCATATTCCCATTGCTTGGTTTTGATCAGTAAATACTGATACTGATCAACCTCATTAAGTGATCCATTTAGTGCACAACTATAAGAGAATAATAAAATGCCTCTATTTTGCAGTTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAGGTGAGATTTTTTCAGTCGGTTTTCCAAATCATTGCACCAAACTGTTTAGGTAGTGGCTGTGCCGTCTAATAAGTATCAACCTGCAGTAGTTAGTATTGAGTTAAAAAGTTTCATTTTGGTGTAGGGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCA</genome_strand>
        <mrna_strand>TTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG.......................................................................................................................TTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTNCAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAG............................................................................................................................GGTTTGCTTGCTAAGGCG-AATTTCATGTCAACTACAAGGGCCAAGCGTTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559030" ref_strand="+" ref_description="SGN-E559030 [18464]">
      <seq>gntaaagttcaatttattatccaaagcttctgcgcgcacagatatttggatttgtagcttcctgaaattatagcaatcggcggcagtagcagccatgggaaattgctgctccgacgagaacggtggacattcggcggtcggcggtaacagtgcttacgcggcgaatcaaaacaacggtcataacgaagccgtcgatgctcttttcaagtctcgcggttaccaaggcctctactcgcacgtcgagttatctctatctgctactggtttgcgtgatcgcgatgtgctttccaagagcgatcctatggtagtcatttattcaaaaggaagagatggttcattgcaagagcttggtcgtactgaagtagttccaaactcattgaatcccaagtggattacaaagtatactattgcctatcattttgagacagtgcagaatttggtgtttcgtgtctgtgatgttgacactcaatttcataatcaagatgtcaagatgcttaaactggaggagcaggactttcttggtgaggctagttgcaccattatctgagattgtcacaaagtcaaatgggtccctgaccttagaccttatacgtggagaacaatcttctggtccaaagcatgcccaaaagtctggtaagcttactgttttgtgcagaagaaagtgttgcgtcaaagactactgtagagttgaaattgagatgttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="111371" stop="119181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111669" g_stop="111914" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111915" i_stop="116083" i_length="4169">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116084" g_stop="116131" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="292" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116132" i_stop="116943" i_length="812">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.928" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116944" g_stop="117092" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="441" r_length="149" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117093" i_stop="117173" i_length="81">
            <donor d_prob="0.001" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117174" g_stop="117222" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="490" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117223" i_stop="118212" i_length="990">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118213" g_stop="118269" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="548" r_length="58" r_score="0.947"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118270" i_stop="118724" i_length="455">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118725" g_stop="118881" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="706" r_length="158" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E559030" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111669" e_stop="111914"/>
          <exon e_start="116084" e_stop="116131"/>
          <exon e_start="116944" e_stop="117092"/>
          <exon e_start="117174" e_stop="117222"/>
          <exon e_start="118213" e_stop="118269"/>
          <exon e_start="118725" e_stop="118881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAAGTTCAATTTATTTACCAAAGTTTCTGCGCGCACACAGATATTTGGATTTGTTGCTTCCTGAAATTGTAGCAATCGGCGGCAGTAGCAGCCATGGGAAATTGCTGCTCCGACGAGAACGGTGGACATTCGGGGGTCGGCGGTAACGGTGCTTACGCGGCAAATCAAAACAACGGCCATAACGAAGCCTTCGATGCTCTACTCAAGTCTCGCGGTTACCAAGGCCTCTACTCGCATGTCGAGGTTCTTTATTCTCTCTGTTTTTCTGCATTTTACTCTTAAACAGGTGTAGGTGTCACCAGATTATTAGTTTCTATTAGTGACTGCGGATTTATTCTATCCTGCTGATTAGAATTTTATTGGATCGGGTTTGGTTGATTTAACATCTATAGTGAGAAAATTCGTCTTAGATGAGCAAATGTAGCTGAATTTTGACTTTTTATTAGATTGGACTAGAAGTTTACTTGGCTTGACCGAAAGAAGATAATTTGAAAGCTGCTGTATTATTCCTTTCTGAATTGACAGCCTGAGTAGATATGTACTCCACATTTTCCCGTGATTTCGGTAGGTTTATTTGGATCATTGTGGTTGATTAAGATCTTTGATGGAGAATTCGTGTTAGGTGAGGATGTAGTGCAGTTTCTTGACATCTATCAGATTGGACTGCAAATTGAATTGGCATTGACTGTGGGCAGAAGATTCCGGGAAGTGCCTTATTAAGGGATTGACGAGCCATCAGCTTGATGAGATGTCTCCCTCCACATTTTTGCGGGGACAAAGAAGTTGATATAGACACCTTAGATCAAAATTTTGTGACCAGGAACTAGTGCTGACTAGTTGACTTTGTTGTATATCTATGCTAAGGGATGGGATGCTTGTCCATAACAAAGAAACAAATGTATTATGCTACTAAACTGAAGTATTTAGGGTTGGAGGATACTGTAGGTGTATCACAGGAAAGATTTTAAAGTGAACTGTTCACTTCCAAGTCGACGAGAATTGAGTGTGGGGGTGGGTGCAAACATTGGGCGTGGAAGGAAGAATAAAGAGTATACGGTTACTTGATCAGAAAATTTGCTCATGTATTTGCGTAGTTTTGAATTGTGAAGTATGGATATATTGAGGAAGTATGGATGTCTTGAGGATTGATGTAGCCAATTCCAACTAATTTTCCTACCTACTTTTGCATGTGAGATGATATTTCACATGACTATATCTGTTCTTGCCTATTTCATGTGTTTTCATCCATTGATCTTACAAGGTTTTCGAGAATGTAATGCAAATAATATAGTGTATACCTTATCCATGTTTGAATTTCTCGATTAATGAAGAAAAGAAAAAACATAGAGAGAATTAGGCGAATGTACCAAAGTTAAAGAAGTTCACATCCACTTAACCACAAAATGTTATTTAATTATTTTTGGTCAACAAAAATTAACCAATGATATACAACAGTCAAAAACTTAAGAGTTTTATTTTTTCTTAAAGAGTATGGTTGAAATTTGCTGAGAACACAAAGACAAGGCAATATACAAATTTGAGGAAGATTGGAGGTGTTGTGAACTGGTTTGGAGTCATAATTCATAGTTGAGAAGTTTCTTTGCGACACATGTATCTCACATATTCTGCACATGTATCTTAAAGTCATGTATTCATGGATATACACATACATTCGATACACATGGGTATGAGATACACAAGCGATACACAGTTATACATGCAAAAGCTTCGTCTTCTTGCTTCGAAATGCAACTCAAATTTCAATTCAAACCACCTCACATCTCTACCAAATCATCCCCAAATTGTTATTCAAACTCCTTAACATGTACCCAATCTATACCAACAACACCCACTCGAAACAATTCTAATTTTAAAAAATCTGAATTTTCATACTCAAGCTTAAGAGAGCTTCAATTGAGTTTTAGCAATCTGCATCACTTTCCAAGCAACCATACTGTATGCACAAAATTAACTCCAAAAGATGTACCCCATCTATTCCAACAAATACCCACTCGAAACAAAATCCTATTTTGGAAAATTGTCTTTTCATGCTAAACTTAGCCTTTGTAGAAATATATAGGTGTATCATTTGGTTTGAAAATGATTATCAAGATAAAGGTTGAGTTATATTGTATTTAAATAAAGTGAGTTTGATGGTGGAGATGAGATCTATTATTTCTAAAAATGAATATTTGTTAGTAGAAAAAACTAGTGATCGTATAAAGAAGAAAAACACAGCGAAGTAGAAAACAAAGAGAAGCACTAAATAGAGACGAATCATTAGACACTTTGTAACAAAACAAGGATTTAAGGTTAGTCAACAAAGAAAAGGATGTAAGACTACCTTTGGTAGTTTTTTTTGCTCCGAGCAGCCAAATTAAGTAATTTTCTCGAAAATATATGCGGGAGAAGTCAGAAGAGGAAATGTTAGTTGACCTTAGTGCATGTCAAGTAAGAGCTAGTGATGGTATGATGCAGCTAACTGCTAAGTAAGGCATGTGCATCTCAAGTAGGAGCTAGTGATAGTATATGCAGCTTAATAAGGCATTCAGTCTATGTATGTGATTATTGTTCAATATGAACGTGATCTATACTTTAATTAACAGTATTGAGATTCAAGCTCCTCGAAAGGTACTTTTAATCAAAACATAATGAAGGTGAAATTGAAGAAAATTGAGTACCTTGTATATAGAAATTTCCATGTCAGCCCTTCTCCTTGTATCACTTTTTGGGATTCTCCTCTTGATCAATATTTTCTCCTTGGAATACCTTGTAAGTATTCCACATAATGTTTCATAATTTAGACATATAACTCTATTTTTATATTGAATTATTTTTAGCCGAATCCCCACACCTGGATTTGTACACCCAAATCTTAATATCTAGACCAGGAAGGATTTGACCTCTAGATTCACACCGTTATCGGACACACACACCCGTGTCCGACCAATTTAGTTGCGGATTAAAGCTGACCGATTTAGTTTTGGTTCTTAAATTAAAATTTAGATATTACCTCAAAGGTGCTATGACCTAAAAATACAGTCATTTCAAAACATTGACCTTATGTACAAAACTTAATTGCCTTCTATAAACTAAAAGGTCACCTATTTTAGGTATGAGAATAGTTATTCGTTTATATCCAAAAAAGATTAGACTTCTAGCTAAATGTGTTTCTAAGGAGTTATTGTGCCGTTGCTCGATCAATTTGGTAGTTGGATATTTTTTTGTATCATTTTACAGTTTTCCGGCTATGTTCCAGTGGGATGACAGGCCAAATATAAATTTGAAGGTTGCCAAGTTGCATAAAAGTTATTGACCTACTGTTAGTTTAATAATATTTTACGACGTGCTGAATAGGAAGATAAAGTATTAGGTGTTTCGCAAAGTTGTTTCTTTTTTTTTCAAATCCAAAAAGTTCTTCTTACTTAGAATAGGTCGTCGATTCAGCAATAGATAAAGGGGGTAAAATCCCTGTTTTTACAATTTACAATAAGCGGTTTAAATCATTTTATCAATATGAGTATCCTATATCGATAAATATTTATTTTGAAACCACCTCTAACATAGTGGTAGAAAGAGTACCATGCTGTGTCTAGACTTCAAACAGTTTGTTTTAACCATGTTAATAGTTCCACATTATTGGTTAATAGAGAATCAAAATAAATTTACCAATGAATCGCGAAATGCTATGGTTCTTACATATAATTTAAGAATTTATACAGAAGTAATTCGCGAGATCATGCACCTCTCTTTCCTACTTATAACGGAAAAGGGTACAGTTGGTTGGTCCAACCTATTCTTGAAATAAACAACTCGCACCTTCATTGACTTCGGCTTTACTAATGACTAAATTGGTTTCGCTGGAACCCATATTGTAACTAGCATTTGCTGCTGCAGAATAAACCAATTTCAAAATGGGATAACATGCTCGATAGGGCATGAGTTCTAGTATCATAAGCGTTTCCTCATAGGAACGTCCGCGAATTTGATCAATTACTCTTCGTGCTTTGTCAGCAGACATAGATATATGTTCACCCAAAGCATATACTTCTGTTTTTTTCTTCTTTAGCATAAGGTTTGTCTCCTACTACTGAATCATAAGTATCTAGATTTTTTTATTAATATTAACGACGAGTATTGATGATTAAATCTCTAACTTTTGGTTTCCTATAGCGTAAATATCCCAATGCTGTTACTTTGACGAAAGCTATATCAGACTGTGTGAAGTTCTTATGAATCATTTTTCTGCTTGAAATCATTTTGCAAGCCCGTCACTATTTACAAGCTATTTATCTATTCTAGTTCTTGGCTCGGAGATCTATGACAAAACTAAACATCTGCAATTAACTGTGGATATTGAAATCTTCCTTTTACAGAAGCTTTTTGGTTTTAACTATTCTATTTACTTGCAGTTGTCTCTATCTGCTACCGGTTTGCGTGATCGCGATGTGCTTTCCAAGGTTTGTTCCTTATTCTTTAGAGTTTGGTAATGTGAATGACAAATACTGACTTTCACGTGATTTGTTTCATGGTAATACTGCTTCAATATTATTTGTTGTTATCTATTTACAATTTCTATAACTTCATTTTCATAGTTGGAGCAAAGCATTGAATGCTTACACTCAGAATATTTTTCATTTCATTAGGCCAATCATTTTAAGGATCAAGTTTCGTGTTAATGCTTAAGGTTAAATCTCACGTATTTTACATAGGATATCCTCCAAAGCTAGCTTCTAAAGACAAACTAGTGTAGTAAAAGGTTGATGGAACAGTAGTAGTTACTGCTCCTTTCTACTATCTGATATCTTCCATAATATTGTGGTTTATAATATCAGGCTCACTCCAGAGTTCGCAATAGAAAGTAATTTTCTGTTGTTCTAACTTCTATAGCAGGTATCACAAGTTCTTTTAAGAAATTTCCCTCTGAACTGTCATTTTATAGACTTACTGACTTCTATATGGTTTATGGTTTATGTATTACCATGATGTTGAATAAAATTGTGTCCACCTAACTAAAAGTATACTATTTCATTACACTAAATAATTAGATGATCTACTTTGTTTATTTTTCTTCTAAAAATCTTAGGAGCCTACTTATTTTGTATGTCAGTAGTTGCTTGCCCTCCCTTTCTGTTCCTTTCTTTTCTTACATGAATGGTTCCGTTGTTACTTTACAATACATTTTATTTGCTAGCATTATTTTCTTGGCCTAAAAATATGTTTGACTTTACCAAGTTATATTGCTCTGTTCTGAATCTCTTATTGTTAACAGAGTGATCCTATGGTAGTCATTTATTCAAAAGGAAGAGATGGTTCATTGCAAGAGCTTAGTCGTACTGAAGTAGTTCCAAACTCATTGAATCCCAAGTGGATTACAAAGTATACTATTGCCTATCATTTTGAGACAGTGCAGAATTTAGTGTGAGTTTTGACACTTCTGTTTTGGAAGTTTCTGTCAATTAGAAACCTCTTTTCTGTCTTACTAGATTCTTTTTATCTCAGGTTCCGTGTCTGTGATGTTGACACCCAATTTCATAATCAAGATGTCAAGGTATATATGCCTGTCCTCTTCTAAAGGATTTCTAAGGTCTAAGTTACCCTAAGCAAAAGTTTAACATTTACCAAACTATGCCAACAGTACGAACAAAAAGTAACCTTATGCACCATCGGCGATGCATATTCATCTATGACTTAAGTCTAGAAACCATGCTTTTCTTTGTTTTATTTTATTTTTTACGTTTTAATTAAATGAAATTGAAGAACTGATGAAAGTTTCTCAAAGTAAACATTTAAATCAGTATCTATTTAAACAATACTAATTATAAAGTGACTTTTTACACATTCTCTTTCAAAATTTGACACTACTTTGGCCAATCATAAACTGCTATCATTCTCAAGTACCTTTTTCTTGAAACTCCATTTGACAAAAATTTCTTCACAAAATAAGCAGATTTTTGAAGTTGGCTAAGCTTGCTGTTTTCAAGAGCTTGAGGTTTTCTCGATAATATTTTTAAGATAACTTCAAGTTCATAGAGTTACTTTTTTTGGTTTATCTTATCCACCCGGTAGACTACTTCTGTAGCATCCCAGGCACTATGGTCTGGGATATTGACCAATCTTCTTGTATGAAAAAATATGTCATTCTTGAGTCATTACTAGTATTTAGTTTCAAATTCTTGCATGTGGTAGTTTACATGATCCTTGTATTCCCTGACACCTAAAATTTGCCATGAACTTCTCCTGAGTCACCTGAACTTGCTGTAGAGCAGAAGTAAGATAAACATGTAAAGCTAAGCGTTAAAATGTCCATTTTCTTCACTCTGCTACATTGTCATCTGTGCAGGCTGCTGGACAATAACTTTCATATCTTACCTCATGAGTACATCATGTCTTGTGCCTTGCAGTTCATTTATCTGTTCCATCATTTACTGTCTACGGGCAAATGAATGAACCATTTTATTTTTCAAGCAATTTTAGAGGATACAAACACATATCATCATGGCTCGTGACTAATATATCAAAGTCTGCATAACTTATGCAGATGCTTAAACTGGAGGAGCAGGACTTTCTTGGCGAGGCTAGTTGCA-CATTATCTGAGGTGCTGATCGGTGTCACCCACTATTATAATTTTGAACTTATAATGTCACTGTAGTTTCTACTTATGGTGTAAGAGACATGACTTAATATTGAGGCTGTAATTGGTATGTGAACTGAAGTGCTTAGAGACTACAGATTTTGCATTTAAGGCTCTATACTTTGTGTAACTCGGTTATGCATATCTCACCACTGGTTTTCTTGTGTGTTGGTCGTTAAAACATTGTGAATTTGCTTGAGAATCATCCACTTGCTTGATTATTTCGAGAGGTTATTAATGTTACCACCAAGATAATAGCCACATTTGATGCCTGCTTTAAAACTGCTTGATATATTTTTCCTGTTTAAGTTCTTGCATGCAGCTTTTTTTATTCCAACTAATGATTTCAGAATCAATATAGTTGTACGTATGAAGTTAACTTTTCCTTATTAATACTAGATTATTGAATTTCCTTGTAGATTGTCACAAAGTCAAACGGGTCCCTGACCTTAGACATTATACGTGGAGAACAATCTTCTGGTCCAACGCATGCCCAAAAATCTGGTAAGCTTACT-ATTTGTGCTGAAGAAAGTGTTGCCTCAAAGACTACTGTAGAGTTGAAATTGAGATGTTCAG</genome_strand>
        <mrna_strand>GNTAAAGTTCAATTTATTATCCAAAGCTTCTGCGCG--CACAGATATTTGGATTTGTAGCTTCCTGAAATTATAGCAATCGGCGGCAGTAGCAGCCATGGGAAATTGCTGCTCCGACGAGAACGGTGGACATTCGGCGGTCGGCGGTAACAGTGCTTACGCGGCGAATCAAAACAACGGTCATAACGAAGCCGTCGATGCTCTTTTCAAGTCTCGCGGTTACCAAGGCCTCTACTCGCACGTCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCTCTATCTGCTACTGGTTTGCGTGATCGCGATGTGCTTTCCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATCCTATGGTAGTCATTTATTCAAAAGGAAGAGATGGTTCATTGCAAGAGCTTGGTCGTACTGAAGTAGTTCCAAACTCATTGAATCCCAAGTGGATTACAAAGTATACTATTGCCTATCATTTTGAGACAGTGCAGAATTTGGT.................................................................................GTTTCGTGTCTGTGATGTTGACACTCAATTTCATAATCAAGATGTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTAAACTGGAGGAGCAGGACTTTCTTGGTGAGGCTAGTTGCACCATTATCTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCACAAAGTCAAATGGGTCCCTGACCTTAGACCTTATACGTGGAGAACAATCTTCTGGTCCAAAGCATGCCCAAAAGTCTGGTAAGCTTACTGTTTTGTGCAGAAGAAAGTGTTGCGTCAAAGACTACTGTAGAGTTGAAATTGAGATGTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557664" ref_strand="+" ref_description="SGN-E557664 [16498]">
      <seq>cgcgcacacagataggatttgtagctccctgaaattgtagcaatcggcggcagtagcagccatgggaaattgctgctccgacgataacggtggacattcggcggtcggcggtaacggtgcttacggggcgaatcaaaacaacggtcataacgaagccgtcgatgctctactcaagtctcgcggttaccaaggcctctactcgcacgtcgagttatctctatctgctactggtttgcgtgatcgcgatgtgctttccaagagcgatcctatggtagtcatttattcaaaaggaagggatggttcattgcaagagcttggtcgtactgaagtagttccaaactcattgaatcccaagtggattacaaagtatactattgcctatcattttgagacagtgcagaatttggtgtgtcgtgtctgtgatgttgacactcaatttcataatcaagatgtcaagatgcttaaactcgaggagcaggactttcttggtgaggctagttgcacattatctgagattgtcacacaagtccaatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="111403" stop="118576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111701" g_stop="111914" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111915" i_stop="116083" i_length="4169">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116084" g_stop="116131" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="259" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116132" i_stop="116943" i_length="812">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.928" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116944" g_stop="117092" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="408" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117093" i_stop="117173" i_length="81">
            <donor d_prob="0.001" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117174" g_stop="117222" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="457" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117223" i_stop="118212" i_length="990">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118213" g_stop="118269" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="514" r_length="57" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E557664" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111701" e_stop="111914"/>
          <exon e_start="116084" e_stop="116131"/>
          <exon e_start="116944" e_stop="117092"/>
          <exon e_start="117174" e_stop="117222"/>
          <exon e_start="118213" e_stop="118269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGCACACAGATATTTGGATTTGTTGCTTCCTGAAATTGTAGCAATCGGCGGCAGTAGCAGCCATGGGAAATTGCTGCTCCGACGAGAACGGTGGACATTCGGGGGTCGGCGGTAACGGTGCTTACGCGGCAAATCAAAACAACGGCCATAACGAAGCCTTCGATGCTCTACTCAAGTCTCGCGGTTACCAAGGCCTCTACTCGCATGTCGAGGTTCTTTATTCTCTCTGTTTTTCTGCATTTTACTCTTAAACAGGTGTAGGTGTCACCAGATTATTAGTTTCTATTAGTGACTGCGGATTTATTCTATCCTGCTGATTAGAATTTTATTGGATCGGGTTTGGTTGATTTAACATCTATAGTGAGAAAATTCGTCTTAGATGAGCAAATGTAGCTGAATTTTGACTTTTTATTAGATTGGACTAGAAGTTTACTTGGCTTGACCGAAAGAAGATAATTTGAAAGCTGCTGTATTATTCCTTTCTGAATTGACAGCCTGAGTAGATATGTACTCCACATTTTCCCGTGATTTCGGTAGGTTTATTTGGATCATTGTGGTTGATTAAGATCTTTGATGGAGAATTCGTGTTAGGTGAGGATGTAGTGCAGTTTCTTGACATCTATCAGATTGGACTGCAAATTGAATTGGCATTGACTGTGGGCAGAAGATTCCGGGAAGTGCCTTATTAAGGGATTGACGAGCCATCAGCTTGATGAGATGTCTCCCTCCACATTTTTGCGGGGACAAAGAAGTTGATATAGACACCTTAGATCAAAATTTTGTGACCAGGAACTAGTGCTGACTAGTTGACTTTGTTGTATATCTATGCTAAGGGATGGGATGCTTGTCCATAACAAAGAAACAAATGTATTATGCTACTAAACTGAAGTATTTAGGGTTGGAGGATACTGTAGGTGTATCACAGGAAAGATTTTAAAGTGAACTGTTCACTTCCAAGTCGACGAGAATTGAGTGTGGGGGTGGGTGCAAACATTGGGCGTGGAAGGAAGAATAAAGAGTATACGGTTACTTGATCAGAAAATTTGCTCATGTATTTGCGTAGTTTTGAATTGTGAAGTATGGATATATTGAGGAAGTATGGATGTCTTGAGGATTGATGTAGCCAATTCCAACTAATTTTCCTACCTACTTTTGCATGTGAGATGATATTTCACATGACTATATCTGTTCTTGCCTATTTCATGTGTTTTCATCCATTGATCTTACAAGGTTTTCGAGAATGTAATGCAAATAATATAGTGTATACCTTATCCATGTTTGAATTTCTCGATTAATGAAGAAAAGAAAAAACATAGAGAGAATTAGGCGAATGTACCAAAGTTAAAGAAGTTCACATCCACTTAACCACAAAATGTTATTTAATTATTTTTGGTCAACAAAAATTAACCAATGATATACAACAGTCAAAAACTTAAGAGTTTTATTTTTTCTTAAAGAGTATGGTTGAAATTTGCTGAGAACACAAAGACAAGGCAATATACAAATTTGAGGAAGATTGGAGGTGTTGTGAACTGGTTTGGAGTCATAATTCATAGTTGAGAAGTTTCTTTGCGACACATGTATCTCACATATTCTGCACATGTATCTTAAAGTCATGTATTCATGGATATACACATACATTCGATACACATGGGTATGAGATACACAAGCGATACACAGTTATACATGCAAAAGCTTCGTCTTCTTGCTTCGAAATGCAACTCAAATTTCAATTCAAACCACCTCACATCTCTACCAAATCATCCCCAAATTGTTATTCAAACTCCTTAACATGTACCCAATCTATACCAACAACACCCACTCGAAACAATTCTAATTTTAAAAAATCTGAATTTTCATACTCAAGCTTAAGAGAGCTTCAATTGAGTTTTAGCAATCTGCATCACTTTCCAAGCAACCATACTGTATGCACAAAATTAACTCCAAAAGATGTACCCCATCTATTCCAACAAATACCCACTCGAAACAAAATCCTATTTTGGAAAATTGTCTTTTCATGCTAAACTTAGCCTTTGTAGAAATATATAGGTGTATCATTTGGTTTGAAAATGATTATCAAGATAAAGGTTGAGTTATATTGTATTTAAATAAAGTGAGTTTGATGGTGGAGATGAGATCTATTATTTCTAAAAATGAATATTTGTTAGTAGAAAAAACTAGTGATCGTATAAAGAAGAAAAACACAGCGAAGTAGAAAACAAAGAGAAGCACTAAATAGAGACGAATCATTAGACACTTTGTAACAAAACAAGGATTTAAGGTTAGTCAACAAAGAAAAGGATGTAAGACTACCTTTGGTAGTTTTTTTTGCTCCGAGCAGCCAAATTAAGTAATTTTCTCGAAAATATATGCGGGAGAAGTCAGAAGAGGAAATGTTAGTTGACCTTAGTGCATGTCAAGTAAGAGCTAGTGATGGTATGATGCAGCTAACTGCTAAGTAAGGCATGTGCATCTCAAGTAGGAGCTAGTGATAGTATATGCAGCTTAATAAGGCATTCAGTCTATGTATGTGATTATTGTTCAATATGAACGTGATCTATACTTTAATTAACAGTATTGAGATTCAAGCTCCTCGAAAGGTACTTTTAATCAAAACATAATGAAGGTGAAATTGAAGAAAATTGAGTACCTTGTATATAGAAATTTCCATGTCAGCCCTTCTCCTTGTATCACTTTTTGGGATTCTCCTCTTGATCAATATTTTCTCCTTGGAATACCTTGTAAGTATTCCACATAATGTTTCATAATTTAGACATATAACTCTATTTTTATATTGAATTATTTTTAGCCGAATCCCCACACCTGGATTTGTACACCCAAATCTTAATATCTAGACCAGGAAGGATTTGACCTCTAGATTCACACCGTTATCGGACACACACACCCGTGTCCGACCAATTTAGTTGCGGATTAAAGCTGACCGATTTAGTTTTGGTTCTTAAATTAAAATTTAGATATTACCTCAAAGGTGCTATGACCTAAAAATACAGTCATTTCAAAACATTGACCTTATGTACAAAACTTAATTGCCTTCTATAAACTAAAAGGTCACCTATTTTAGGTATGAGAATAGTTATTCGTTTATATCCAAAAAAGATTAGACTTCTAGCTAAATGTGTTTCTAAGGAGTTATTGTGCCGTTGCTCGATCAATTTGGTAGTTGGATATTTTTTTGTATCATTTTACAGTTTTCCGGCTATGTTCCAGTGGGATGACAGGCCAAATATAAATTTGAAGGTTGCCAAGTTGCATAAAAGTTATTGACCTACTGTTAGTTTAATAATATTTTACGACGTGCTGAATAGGAAGATAAAGTATTAGGTGTTTCGCAAAGTTGTTTCTTTTTTTTTCAAATCCAAAAAGTTCTTCTTACTTAGAATAGGTCGTCGATTCAGCAATAGATAAAGGGGGTAAAATCCCTGTTTTTACAATTTACAATAAGCGGTTTAAATCATTTTATCAATATGAGTATCCTATATCGATAAATATTTATTTTGAAACCACCTCTAACATAGTGGTAGAAAGAGTACCATGCTGTGTCTAGACTTCAAACAGTTTGTTTTAACCATGTTAATAGTTCCACATTATTGGTTAATAGAGAATCAAAATAAATTTACCAATGAATCGCGAAATGCTATGGTTCTTACATATAATTTAAGAATTTATACAGAAGTAATTCGCGAGATCATGCACCTCTCTTTCCTACTTATAACGGAAAAGGGTACAGTTGGTTGGTCCAACCTATTCTTGAAATAAACAACTCGCACCTTCATTGACTTCGGCTTTACTAATGACTAAATTGGTTTCGCTGGAACCCATATTGTAACTAGCATTTGCTGCTGCAGAATAAACCAATTTCAAAATGGGATAACATGCTCGATAGGGCATGAGTTCTAGTATCATAAGCGTTTCCTCATAGGAACGTCCGCGAATTTGATCAATTACTCTTCGTGCTTTGTCAGCAGACATAGATATATGTTCACCCAAAGCATATACTTCTGTTTTTTTCTTCTTTAGCATAAGGTTTGTCTCCTACTACTGAATCATAAGTATCTAGATTTTTTTATTAATATTAACGACGAGTATTGATGATTAAATCTCTAACTTTTGGTTTCCTATAGCGTAAATATCCCAATGCTGTTACTTTGACGAAAGCTATATCAGACTGTGTGAAGTTCTTATGAATCATTTTTCTGCTTGAAATCATTTTGCAAGCCCGTCACTATTTACAAGCTATTTATCTATTCTAGTTCTTGGCTCGGAGATCTATGACAAAACTAAACATCTGCAATTAACTGTGGATATTGAAATCTTCCTTTTACAGAAGCTTTTTGGTTTTAACTATTCTATTTACTTGCAGTTGTCTCTATCTGCTACCGGTTTGCGTGATCGCGATGTGCTTTCCAAGGTTTGTTCCTTATTCTTTAGAGTTTGGTAATGTGAATGACAAATACTGACTTTCACGTGATTTGTTTCATGGTAATACTGCTTCAATATTATTTGTTGTTATCTATTTACAATTTCTATAACTTCATTTTCATAGTTGGAGCAAAGCATTGAATGCTTACACTCAGAATATTTTTCATTTCATTAGGCCAATCATTTTAAGGATCAAGTTTCGTGTTAATGCTTAAGGTTAAATCTCACGTATTTTACATAGGATATCCTCCAAAGCTAGCTTCTAAAGACAAACTAGTGTAGTAAAAGGTTGATGGAACAGTAGTAGTTACTGCTCCTTTCTACTATCTGATATCTTCCATAATATTGTGGTTTATAATATCAGGCTCACTCCAGAGTTCGCAATAGAAAGTAATTTTCTGTTGTTCTAACTTCTATAGCAGGTATCACAAGTTCTTTTAAGAAATTTCCCTCTGAACTGTCATTTTATAGACTTACTGACTTCTATATGGTTTATGGTTTATGTATTACCATGATGTTGAATAAAATTGTGTCCACCTAACTAAAAGTATACTATTTCATTACACTAAATAATTAGATGATCTACTTTGTTTATTTTTCTTCTAAAAATCTTAGGAGCCTACTTATTTTGTATGTCAGTAGTTGCTTGCCCTCCCTTTCTGTTCCTTTCTTTTCTTACATGAATGGTTCCGTTGTTACTTTACAATACATTTTATTTGCTAGCATTATTTTCTTGGCCTAAAAATATGTTTGACTTTACCAAGTTATATTGCTCTGTTCTGAATCTCTTATTGTTAACAGAGTGATCCTATGGTAGTCATTTATTCAAAAGGAAGAGATGGTTCATTGCAAGAGCTTAGTCGTACTGAAGTAGTTCCAAACTCATTGAATCCCAAGTGGATTACAAAGTATACTATTGCCTATCATTTTGAGACAGTGCAGAATTTAGTGTGAGTTTTGACACTTCTGTTTTGGAAGTTTCTGTCAATTAGAAACCTCTTTTCTGTCTTACTAGATTCTTTTTATCTCAGGTTCCGTGTCTGTGATGTTGACACCCAATTTCATAATCAAGATGTCAAGGTATATATGCCTGTCCTCTTCTAAAGGATTTCTAAGGTCTAAGTTACCCTAAGCAAAAGTTTAACATTTACCAAACTATGCCAACAGTACGAACAAAAAGTAACCTTATGCACCATCGGCGATGCATATTCATCTATGACTTAAGTCTAGAAACCATGCTTTTCTTTGTTTTATTTTATTTTTTACGTTTTAATTAAATGAAATTGAAGAACTGATGAAAGTTTCTCAAAGTAAACATTTAAATCAGTATCTATTTAAACAATACTAATTATAAAGTGACTTTTTACACATTCTCTTTCAAAATTTGACACTACTTTGGCCAATCATAAACTGCTATCATTCTCAAGTACCTTTTTCTTGAAACTCCATTTGACAAAAATTTCTTCACAAAATAAGCAGATTTTTGAAGTTGGCTAAGCTTGCTGTTTTCAAGAGCTTGAGGTTTTCTCGATAATATTTTTAAGATAACTTCAAGTTCATAGAGTTACTTTTTTTGGTTTATCTTATCCACCCGGTAGACTACTTCTGTAGCATCCCAGGCACTATGGTCTGGGATATTGACCAATCTTCTTGTATGAAAAAATATGTCATTCTTGAGTCATTACTAGTATTTAGTTTCAAATTCTTGCATGTGGTAGTTTACATGATCCTTGTATTCCCTGACACCTAAAATTTGCCATGAACTTCTCCTGAGTCACCTGAACTTGCTGTAGAGCAGAAGTAAGATAAACATGTAAAGCTAAGCGTTAAAATGTCCATTTTCTTCACTCTGCTACATTGTCATCTGTGCAGGCTGCTGGACAATAACTTTCATATCTTACCTCATGAGTACATCATGTCTTGTGCCTTGCAGTTCATTTATCTGTTCCATCATTTACTGTCTACGGGCAAATGAATGAACCATTTTATTTTTCAAGCAATTTTAGAGGATACAAACACATATCATCATGGCTCGTGACTAATATATCAAAGTCTGCATAACTTATGCAGATGCTTAAACTGGAGGAGCAGGACTTTCTTGGCGAGGCTAGTTGCACATTATCTGAG</genome_strand>
        <mrna_strand>CGCGCACACAGATA---GGATTTGTAGCTCCCTGAAATTGTAGCAATCGGCGGCAGTAGCAGCCATGGGAAATTGCTGCTCCGACGATAACGGTGGACATTCGGCGGTCGGCGGTAACGGTGCTTACGGGGCGAATCAAAACAACGGTCATAACGAAGCCGTCGATGCTCTACTCAAGTCTCGCGGTTACCAAGGCCTCTACTCGCACGTCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCTCTATCTGCTACTGGTTTGCGTGATCGCGATGTGCTTTCCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATCCTATGGTAGTCATTTATTCAAAAGGAAGGGATGGTTCATTGCAAGAGCTTGGTCGTACTGAAGTAGTTCCAAACTCATTGAATCCCAAGTGGATTACAAAGTATACTATTGCCTATCATTTTGAGACAGTGCAGAATTTGGT.................................................................................GTGTCGTGTCTGTGATGTTGACACTCAATTTCATAATCAAGATGTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTAAACTCGAGGAGCAGGACTTTCTTGGTGAGGCTAGTTGCACATTATCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203462" ref_strand="+" ref_description="SGN-E203462 [cLEC-15-A16]">
      <seq>ggcgaggctagttgcacattatctgagattgtcacaaagtcaaacgggtccctgaccttagacattatacgtggagaacaatcttctggtccaacgcatgcccaaaaatctggtaagcttactatttgtgctgaagaaagtgttgcctcaaagactactgtagagttgaaattgagatgttcagaattggtgtccaaggatttgttctccaaaagtgatccctttttggtgatatctaaatatacagagagtggaatgatggttccaatttgcaaaacagaaattattaaagatgatcatagtccaaagtggaaaccaattatcgtgaatattcaacaagttggaagtaaggacagtccattgactattgagtgttatgacttcaattcaaacggaaagcatgatttaattggcaagattcagaaatcactatcagatttagaagtgttgcactcgactggttcgagtactaatcttttcacatcagctgctgtaggacaaagttcgcaaaacaaggtcctaaagagccagctttttgtggatagctttttcgagaaaacccagcatacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="118401" stop="120704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118725" g_stop="118913" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="216" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118914" i_stop="118998" i_length="85">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118999" g_stop="119133" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="351" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119134" i_stop="120016" i_length="883">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120017" g_stop="120078" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="413" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120079" i_stop="120163" i_length="85">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120164" g_stop="120266" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="516" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120267" i_stop="120348" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.215" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120349" g_stop="120404" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="572" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E203462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118725" e_stop="118913"/>
          <exon e_start="118999" e_stop="119133"/>
          <exon e_start="120017" e_stop="120078"/>
          <exon e_start="120164" e_stop="120266"/>
          <exon e_start="120349" e_stop="120404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTCACAAAGTCAAACGGGTCCCTGACCTTAGACATTATACGTGGAGAACAATCTTCTGGTCCAACGCATGCCCAAAAATCTGGTAAGCTTACTATTTGTGCTGAAGAAAGTGTTGCCTCAAAGACTACTGTAGAGTTGAAATTGAGATGTTCAGAATTGGTGTCCAAGGATTTGTTCTCCAAAAGTGTAAGAACTCATCAGATTAGTTTTATCTTTTGTCATTCTGAATTGTGTGATGTATACAAGTTCAATATCTTATTGCTTGTGGCAGGATCCCTTTTTGGTGATATCTAAATATACAGAGAGTGGAATGATGGTTCCAATTTGCAAAACAGAAATTATTAAAGATGATCATAGTCCAAAGTGGAAACCAATTATCGTGAATATTCAACAAGTTGGAAGTAAGGTATAAAAAAAATGTTCCCCCATGTGCTTCCTAAAAGAATTTCTGATACCCTCCCCCTAAAATGTAGTACCTTGGAAGGGAGAAAACAGGGAACCCTGTGAGACAGATACTGCTACGAGCTAGAGTGCCTTTTTCTATGGAACCATATGCTATTCCATGTGAATCAGAAGTTGGTATGAGCAAGTGTGAAATTGTTAGAATTTTCTATGGAATTTGAATTTGGCGCAAAAGAAATACTTTTCATGTACTCATTAACCATATTTTCTGTGGATTCCTAGATCAATCATAGATAATTGAATTTGAAGTGTAGCTAGTGATCTTTTACACATCGATTAGTTAAGGGATGCCTGTATAGTATGCACTACTGAGTTTTGGCAGATTGTGTGCTCTCACTTAGAAGAATTTCTTTGTATTTGCTATTTAATTTTAAGGAGAGCTTGGAGCAATGGTAAAGTTACCTTCGTGTGACCAATAGGTGGGGTTCGAGCCGTGGAATCACCCACTGATGCTCAAGGGTAGGCTGCCTACATCACACCCCTTAGGGGTGTGGCCCTTCCCTGACCCTGCGTGAACACGAGATGCTTAATGCATCGGGCTGTCCTTTTTTCTTTTCTTTTTGCTCTTTAATCTTATATTGTATTTTCTGATTTTATTTGCTAGTTAAATAATTTAGGTACCAGAATTCCTTAGAAGTGTTTCATGCATGGCCTATCGCAGAATACAATCAAAGTTTTCTCATCTTATAGTAGTCATCTATAGCTTGGAATCGAGGGCCTGTATCTCTAATTATCTTACTAAATTGGTGTATATTCTAAATAATAACCATTCGTCGAGTATGTCAGGAAACTATATTAAGATATCAATAACGTTTGAACAAATGCAGGACAGTCCATTGACTATTGAGTGTTATGACTTCAATTCAAACGGAAAGCATGATTTAATTGGGTAAATGGCCTTCCTTTCATCTTTCTGTCATTTCTGACCTTTATGGACTGGAAACTGACTGTCTTTCTCCTATGACAATTGTCAGCAAGATTCAGAAATCACTATCAGATTTAGAAGTGTTGCACTCGACTGGTTCGAGTACTAATCTTTTCACATCAGCTGCTGTAGGACAAAGTTCGCAAAACAAGGTAAATCTCTATTGTCAGGAAAAAAGGTACTTCCTAGTTCTAAACTTTCTTCATTTGATCATTGAGGTCACAATTTCGCCAGGTCCTAAAGAGCCAGCTTTTTGTGGATAGCTTTTTCGAGAAAACCCAGCATACATT</genome_strand>
        <mrna_strand>ATTGTCACAAAGTCAAACGGGTCCCTGACCTTAGACATTATACGTGGAGAACAATCTTCTGGTCCAACGCATGCCCAAAAATCTGGTAAGCTTACTATTTGTGCTGAAGAAAGTGTTGCCTCAAAGACTACTGTAGAGTTGAAATTGAGATGTTCAGAATTGGTGTCCAAGGATTTGTTCTCCAAAAGT.....................................................................................GATCCCTTTTTGGTGATATCTAAATATACAGAGAGTGGAATGATGGTTCCAATTTGCAAAACAGAAATTATTAAAGATGATCATAGTCCAAAGTGGAAACCAATTATCGTGAATATTCAACAAGTTGGAAGTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGTCCATTGACTATTGAGTGTTATGACTTCAATTCAAACGGAAAGCATGATTTAATTGG.....................................................................................CAAGATTCAGAAATCACTATCAGATTTAGAAGTGTTGCACTCGACTGGTTCGAGTACTAATCTTTTCACATCAGCTGCTGTAGGACAAAGTTCGCAAAACAAG..................................................................................GTCCTAAAGAGCCAGCTTTTTGTGGATAGCTTTTTCGAGAAAACCCAGCATACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260744" ref_strand="+" ref_description="SGN-E260744 [cLEG-54-L6]">
      <seq>gcaaaacaaggtcctaaagagccagctttttgtggatagctttttcgagaaaacccagcatacattcctcgattacttggcatggggctatgaacttaacttcatggtggccattgactttactgcttctaatggaaatccacgcttacacgattcattgcattatatcgatccttcaggacggccaaatgattatcagagagccatcttggatgctggagaggtattgcagttctatgatagagaccgacgttatcctgcttggggttttggagcgcggccaatcgatggccctgtttctcattgcttcaatctaaatggcagcagtgactactgtgaggtggaaggaatccagggtatcatgacggcatacatgagtgccctttttaatgtttcacttgcaggaccaactatatttggaccagttgttacgtcagctgcagatatagcaaatcagtctttgatgaagcgcgagcggaagtacttcgttttgttaataatcacggacggagtgataacagatctccaagaaacaatggatgcccttgttcatgctgcggatttgccattgtcagttcttattgttgggggtttggaggagctgatttcaaggaaatggagattttagatgctgacaaacagagacttgaatcaacacatggggcgtngttgcagtgcgtgacatagtccaatttgttccccttccgggatgtacaaagtggagactcggtccttcaagcacttttagcagaactaccnttcccagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="120045" stop="122759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120257" g_stop="120266" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120267" i_stop="120348" i_length="82">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.215" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120349" g_stop="120463" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="125" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120464" i_stop="120992" i_length="529">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.116" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120993" g_stop="121069" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="202" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121070" i_stop="121151" i_length="82">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121152" g_stop="121289" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="340" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121290" i_stop="121400" i_length="111">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121401" g_stop="121565" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="505" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="121566" i_stop="122005" i_length="440">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="122006" g_stop="122119" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="621" r_length="116" r_score="0.965"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="122120" i_stop="122211" i_length="92">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="122212" g_stop="122305" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="718" r_length="97" r_score="0.936"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="122306" i_stop="122408" i_length="103">
            <donor d_prob="0.820" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="122409" g_stop="122459" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="770" r_length="52" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E260744" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120257" e_stop="120266"/>
          <exon e_start="120349" e_stop="120463"/>
          <exon e_start="120993" e_stop="121069"/>
          <exon e_start="121152" e_stop="121289"/>
          <exon e_start="121401" e_stop="121565"/>
          <exon e_start="122006" e_stop="122119"/>
          <exon e_start="122212" e_stop="122305"/>
          <exon e_start="122409" e_stop="122459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAACAAGGTAAATCTCTATTGTCAGGAAAAAAGGTACTTCCTAGTTCTAAACTTTCTTCATTTGATCATTGAGGTCACAATTTCGCCAGGTCCTAAAGAGCCAGCTTTTTGTGGATAGCTTTTTCGAGAAAACCCAGCATACATTCCTCGATTACTTGGCATGGGGCTATGAACTTAACTTCATGGTGGCCATTGACTTTACTGGTATGCATGGGTCTGTATATATGTTTTGTACTCTTTCTCCTTCATGATATCAGGTTTGAGCAAAGTTGCATATATTTCTGTAACTATGCATGGGCATATTGTGTTGCCTTCACCAATCTTATTATCATCATCTCTGATGCCTTTTCTATTTTTGGCATTGGGGGTGTAAGATTGAGCCACCTTAGGGGCTTAAAATTCCTATTCTTGGGGTGCCCGTAATTCTGTATACTCTGATCGTCTTTGTGACTGTATTTGTATCATCTTTAATCTAGCTAGTTTTGGCACTTTACTCAACATCCATATGAATATTTTTGTGTCATTACTGAAAGAATTGCTTGGATTAACTGAAAGATCTAATAGTATGACAGTTTGATTGGCCCTTCAAATAATATGCATCTATTATGTCGATTCTATTAGTTACACTTACATTTATTTGCTTCTCTAAGCTTTCTTCTGCTATGGCCATTGCGTATTTCTTATTTTTCATCTCAGCATGCATTTGTTCTCTCACACGAGTTGTGTTTGTCAGCTTCTAATGGAAATCCACGCTTACACGATTCATTGCATTATATCGATCCTTCAGGACGGCCAAATGATTATCAGAGAGTGAGAAACTGGTCTTGTACATAATGGTCTTGTATGTACACTTCATATGAATAACTTCATTAAATCGGAATTCAAATTTTAGGCCATCTTGGATGCTGGAGAGGTATTGCAGTTCTATGATAGAGACCGACGTTATCCTGCTTGGGGTTTTGGAGCGCGGCCAATCGATGGCCCTGTTTCTCATTGCTTCAATCTAAATGGCAGCAGTGACTACTGTGAGGTGTGTCCAAAAAAGCATTAAATATGCCAAATTTTGTTATATTTTGATGTTGTGAATTCCCTTGTTTCTGGTTATCATCTTATTTTACTAATCAGTAATTTCTTATTCCAGGTGGAAGGAATCCAGGGTATCATGACGGCATACATGAGTGCCCTTTTTAATGTTTCACTTGCAGGACCAACTATATTTGGACCAGTTGTTACGTCAGCTGCAGATATAGCAAATCAGTCTTTGATGAAGCGCGAGCGGAAGTACTTCGTTTTGTTAATAATCACGGTACATCTTATTTCCTGATGGTCATGGTTTTTAGATCAATTAAAATGTTAACCATTGTGTGCTAGAACGTTGGCTTTCCATTGGTTAGAGTTTTAGCCAATTGATCTCTTCTCCGCTATCAGATTTCTTGGTTTGTTGAGTGGGAATTGTTCTTTTTTCAACGAATGAGTTAAGTTTGAACCTTGCTTGGTAGCATGAGCCTGAGTTCCCATCAGGCCTTTCTCAATTAATATAGACAAATGGCAGAGATATAAATGTGCATGGACATGTAAATATTTCATTAGAAGGCATAAAAGTGGTGTGGAAACCCTTTAATTGAATTTCACTTGGAGTGAAGCTCCTATTTAATTTTGGTCAATGCTGAATTTCATCATGCTTATTTGTGAGTAAATTTCATATGGTTATTTCAATGTGCTGATTACATTATTACAAAATCCCAGGACGGAGTGATAACAGATCTCCAAGAAACAATGGATGCCCTTGTTCATGCTGCGGATTTGCCATTGTCAGTTCTTATTGTT-GGGG-TTGGAGGAGCTGATTTCAAGGAAATGGAGGTGTGTATTTTCTGTTTATCCAGAATGCAGTATTATCAACACTATTAAATCGCCTAATGGTGTAAAGACATTCCCGTATTGTATGTTCACAGATTTTAGATGCTGACAAACAGAGACTTGAATCAACACAT-GGGCGT-GTTGCAGTGCGTGACATAGTCCAATTTGTT-CCCTTCCGGGATGTACAAAGTAGGTCATTTTAACACTTACCACGAGCCATCTCTTATATAAGAGGACAGATGTGAGTTGGCTTTCTCTTTCTGTGAGCTGATTCCGTTGCATTGATTTGTAGGTGGAGACTCGGTCCTTCAAGCACTTTTAGCAGAACTACC-TTCCCAGTTTT</genome_strand>
        <mrna_strand>GCAAAACAAG..................................................................................GTCCTAAAGAGCCAGCTTTTTGTGGATAGCTTTTTCGAGAAAACCCAGCATACATTCCTCGATTACTTGGCATGGGGCTATGAACTTAACTTCATGGTGGCCATTGACTTTACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTAATGGAAATCCACGCTTACACGATTCATTGCATTATATCGATCCTTCAGGACGGCCAAATGATTATCAGAGA..................................................................................GCCATCTTGGATGCTGGAGAGGTATTGCAGTTCTATGATAGAGACCGACGTTATCCTGCTTGGGGTTTTGGAGCGCGGCCAATCGATGGCCCTGTTTCTCATTGCTTCAATCTAAATGGCAGCAGTGACTACTGTGAG...............................................................................................................GTGGAAGGAATCCAGGGTATCATGACGGCATACATGAGTGCCCTTTTTAATGTTTCACTTGCAGGACCAACTATATTTGGACCAGTTGTTACGTCAGCTGCAGATATAGCAAATCAGTCTTTGATGAAGCGCGAGCGGAAGTACTTCGTTTTGTTAATAATCACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGAGTGATAACAGATCTCCAAGAAACAATGGATGCCCTTGTTCATGCTGCGGATTTGCCATTGTCAGTTCTTATTGTTGGGGGTTTGGAGGAGCTGATTTCAAGGAAATGGAG............................................................................................ATTTTAGATGCTGACAAACAGAGACTTGAATCAACACATGGGGCGTNGTTGCAGTGCGTGACATAGTCCAATTTGTTCCCCTTCCGGGATGTACAAA.......................................................................................................GTGGAGACTCGGTCCTTCAAGCACTTTTAGCAGAACTACCNTTCCCAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249146" ref_strand="-" ref_description="SGN-E249146 [cLEF-50-A21]">
      <seq>gtacttcgttttgttaataatcacggacggagtgataacagatctccaagaaacaatggatgcccttgttcatgctgcggatttgccattgtcagttcttattgttggggttggaggagctgatttcaaggaaatggagattttagatgctgacaaacagagacttgaatcaacacatgggcgtgttgcagtgcgtgacatagtccaatttgttcccttccgggatgtacaaagtggagactcggtccttcaagcacttttagcagaactaccttcccagtttttggaatacatgcggctcaaaaggatccagccaacttaacgatcatacaagaattgtacatacaaatgttgattcatgtattgtgtcctgttaaattcgccattttctagcttgttccccaatggtgtcagaagttttgtttttggatgtctcaattcgccttctctttcctatttcccagaagcttgtactttttaaattatatttcttcattatcatcttcttatttattttgttgattcaatttcaaatgaagctcttttacctttgtgtactgattgtgtaaatgtaatctcgtcaggatgaaaggatgctgcaaataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="121241" stop="123080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121541" g_stop="121565" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121566" i_stop="122005" i_length="440">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122006" g_stop="122119" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="139" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122120" i_stop="122211" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122212" g_stop="122305" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="233" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122306" i_stop="122408" i_length="103">
            <donor d_prob="0.820" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122409" g_stop="122777" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="602" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="603" polyA_stop="619"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E249146" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249146" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="121541" e_stop="121565"/>
          <exon e_start="122006" e_stop="122119"/>
          <exon e_start="122212" e_stop="122305"/>
          <exon e_start="122409" e_stop="122777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTTCGTTTTGTTAATAATCACGGTACATCTTATTTCCTGATGGTCATGGTTTTTAGATCAATTAAAATGTTAACCATTGTGTGCTAGAACGTTGGCTTTCCATTGGTTAGAGTTTTAGCCAATTGATCTCTTCTCCGCTATCAGATTTCTTGGTTTGTTGAGTGGGAATTGTTCTTTTTTCAACGAATGAGTTAAGTTTGAACCTTGCTTGGTAGCATGAGCCTGAGTTCCCATCAGGCCTTTCTCAATTAATATAGACAAATGGCAGAGATATAAATGTGCATGGACATGTAAATATTTCATTAGAAGGCATAAAAGTGGTGTGGAAACCCTTTAATTGAATTTCACTTGGAGTGAAGCTCCTATTTAATTTTGGTCAATGCTGAATTTCATCATGCTTATTTGTGAGTAAATTTCATATGGTTATTTCAATGTGCTGATTACATTATTACAAAATCCCAGGACGGAGTGATAACAGATCTCCAAGAAACAATGGATGCCCTTGTTCATGCTGCGGATTTGCCATTGTCAGTTCTTATTGTTGGGGTTGGAGGAGCTGATTTCAAGGAAATGGAGGTGTGTATTTTCTGTTTATCCAGAATGCAGTATTATCAACACTATTAAATCGCCTAATGGTGTAAAGACATTCCCGTATTGTATGTTCACAGATTTTAGATGCTGACAAACAGAGACTTGAATCAACACATGGGCGTGTTGCAGTGCGTGACATAGTCCAATTTGTTCCCTTCCGGGATGTACAAAGTAGGTCATTTTAACACTTACCACGAGCCATCTCTTATATAAGAGGACAGATGTGAGTTGGCTTTCTCTTTCTGTGAGCTGATTCCGTTGCATTGATTTGTAGGTGGAGACTCGGTCCTTCAAGCACTTTTAGCAGAACTACCTTCCCAGTTTTTGGAATACATGCGGCTCAAAAGGATCCAGCCAACTTAACGATCATACAAGAATTGTACATACAAATGTTGATTCATGTATTGTGTCCTGTTAAATTCGCCATTTTCTAGCTTGTTCCCCAATGGTGTCAGAAGTTTTGTTTTTGGATGTCTCAATTCGCCTTCTCTTTCCTATTTCCCAGAAGCTTGTACTTTTTAAATTATATTTCTTCATTATCATCTTCTTATTTATTTTGTTGATTCAATTTCAAATGAAGCTCTTTTACCTTTGTGTACTGATTGTGTAAATGTAATCTCGTCAGGATGAAAGGATGCTGCAA</genome_strand>
        <mrna_strand>GTACTTCGTTTTGTTAATAATCACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGAGTGATAACAGATCTCCAAGAAACAATGGATGCCCTTGTTCATGCTGCGGATTTGCCATTGTCAGTTCTTATTGTTGGGGTTGGAGGAGCTGATTTCAAGGAAATGGAG............................................................................................ATTTTAGATGCTGACAAACAGAGACTTGAATCAACACATGGGCGTGTTGCAGTGCGTGACATAGTCCAATTTGTTCCCTTCCGGGATGTACAAA.......................................................................................................GTGGAGACTCGGTCCTTCAAGCACTTTTAGCAGAACTACCTTCCCAGTTTTTGGAATACATGCGGCTCAAAAGGATCCAGCCAACTTAACGATCATACAAGAATTGTACATACAAATGTTGATTCATGTATTGTGTCCTGTTAAATTCGCCATTTTCTAGCTTGTTCCCCAATGGTGTCAGAAGTTTTGTTTTTGGATGTCTCAATTCGCCTTCTCTTTCCTATTTCCCAGAAGCTTGTACTTTTTAAATTATATTTCTTCATTATCATCTTCTTATTTATTTTGTTGATTCAATTTCAAATGAAGCTCTTTTACCTTTGTGTACTGATTGTGTAAATGTAATCTCGTCAGGATGAAAGGATGCTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712009" ref_strand="+" ref_description="SGN-E712009 [FB03CE08]">
      <seq>gtggtttccattgcttaaatcttcttcatccttccgactcatagattttctcaagcttatttggttatcgagaggtggcttagcttgagtttactctccattgttgtattctccgagatcggagataaacggattggatctggagatcagatactgttttaaaaatcctcatttttcatatattcactgcaatttcgctttaggatcttgatttaaggcttggtggaaggcaaaactgatttagagagggcattcagatatgtcggcactcttcaatttccactcctttttgacagtagtgctgttagggatttgtacatgcacttatgtgaagatgcattttcctgcactacttgaacagagaactgggtttcgaggtttcttttggaaggctgctagaataggtgaacggttgagtccttgggtggcagtgggctgcttgacgatgggtgtttcaataatcttcttctgagagaacaactgtttgcaattcatgaaagtacactctcagctgggcttaaattagcacttgaatctatttttcatcaaatgatctgttcgattaaaagatggcacgaaacttgatgtgacaccaacactgctttcttgatcatgaactgagttttatcgtgtggaaattttggattgtgacaatgttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="125715" stop="130819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126015" g_stop="126231" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126232" i_stop="128145" i_length="1914">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128146" g_stop="128190" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="262" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128191" i_stop="128270" i_length="80">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128271" g_stop="128377" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="369" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128378" i_stop="129582" i_length="1205">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.330" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129583" g_stop="129617" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="404" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="129618" i_stop="130265" i_length="648">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130266" g_stop="130516" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="655" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="130517" i_stop="130584" i_length="68">
            <donor d_prob="0.540" d_score="1.00"/>
            <acceptor a_prob="0.187" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="130585" g_stop="130601" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="672" r_length="17" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E712009" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126015" e_stop="126231"/>
          <exon e_start="128146" e_stop="128190"/>
          <exon e_start="128271" e_stop="128377"/>
          <exon e_start="129583" e_stop="129617"/>
          <exon e_start="130266" e_stop="130516"/>
          <exon e_start="130585" e_stop="130601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTTTCCATTGCTTAAATCTTCTTCATCCTTCCGACTCATAGATTTTCTCAAGCTTATTTGGTTATCGAGAGGTGGCTTAGCTTGAGTTTACTCTCCATTGTTGTATTCTCCGAGATCGGAGATAAACGGATTGGATCTGGAGATCAGATACTGTTTTAAAAATCCTCATTTTTCATATATTCACTGCAATTTCGCTTTAGGATCTTGATTTAAGGTACCCTTCCGCCGTTTTTTATACCCTTCTCTTTTTTTTTTGGTTATTGCAGATTTTAAATTGCCTTATACAACGACTGCCACTTCGTAATGGATGTAAAGTTCGGGTTTTTACCCAAAAAATATAAAAATTCTTTCTGAGAAAAAAGGGTAGGTTCTTCAAAAGGAGAAATTTTGGTTTATTTAGGAAAAGAAAAAAGAGAAGAAGAAAGTCTGGTCTGAAAACTAAATTTAGTTGAATTTGGTTTGCTGGAGAACTGGGTTTTATTTGGTGGGTTAGGGTTTTGAACCTTTTCTTCAGTTTCTTTTAACCCCTATACCCAGAAAAACATGCAATTACTAACCCGAGTATGAAAACTTGTACTTAGTGTAGGATTTTAGTTAGCTTGCTATTTGCTTTCGAAAGTAATTAACTGGAAATAAATTAGGCAATTAATGTTGGTACTTATTCAGTTTGTTTGGTTTATATAAGTTTACAGAACTTTTGGTAACTTTGCTTCATGTTGGGATCTGATAGACTTTGTTCATGATCCGTTTTCTAGTTGCTTTTAGCTGCTTAATGTTAATGCTTTGTATGATATCAAGTTCTATGTCCTCTTATGTGTTTTAAGTTATGAAACAATGTGGTATTGGAAGTTAATATTGCCTATCAAAGTTACAAATGTAGATTTTGAAAGTTTTTTCTAGCAAGAATTATGGTATGAAGATTCTATATATCATTCTAGTTTAATGAAATTTCGGCAACGGGGCATCAATCAGAACTTGGAAATTTAAGTATTGTGTGGTCAAAGGAGCTTAATGCTGTAAATTTTGCATAACCATAGCTAAGTACCTGACTCCATTATAGGACCAAGACAGTCCTAGTGTCCAAGCTCAAGTTTTCCGATTACGTGCCAGTTCTAAGGTGGTATACGCTATTGAACATATAGACTCTGGTGCTTTAGAAAATTGTAGAGCATTGCAATGAAAGATGTTGCAGAAAAGCATTGGGGCATCTTAGAGATTGGAATAGTAAATGTTGTCCAAGTCTTGCACTGGTTAATCTGGGTTATCTGTAACCTCAAGGCCAAAGTTGAGGTATTAAGCAGGCAGGCTATTGCAGAAAGTCTGCTCGAAATTTGCTGTGCAGTAGCAGCTGGCTAGGATCATTAACATTGAAGAACGGAACTTCAGTGGTAAATGCAATAGTAAGCCGTAGAGTCTTCTCTCCCAAAAGAAAAATGAAGGGGAGAGAAGACTCTAGACAACAAACCATGGTTCTTCAGCATCATACATCACGGAGTTGGGAATATTTCTTTTCCTGATAAATGACGAGAGTTAAACCTGTCATAACTGTTTGAGTGGAAGGGGCCATATAAATACAGTTGCAACTTAAAATATGACTACAAATTATTCCTTTTTTGAGCTTGAATGGAGATTTAATTACCTGGCAGCTCGCAGCTATATGTTCTATACCAAAGTCTCTTTTTGACTATTATATGTTTTTCATTTCGGGGGTATAAATGTTACTTTAAGGTCATTGTGTATATGTATAAGAGTTACAACCTTGGGTCATTAAAGAAAAAGATTATAGAGAAGATTGAATAATTCAGAAGATGACATGTGAGACGATAAATAAGAGCACTGTTCTTGCTCAGTGCAGAAAGCTATTAAGAGACTCAGATTTTTCTTATTTCAAAAGCATTGCTCATGAAACCTTAATGGTTTATGCTTCTACAATCTTTTTATATTTTGTAGGGTTTATTTACTTAATGAATCTAGTGTCAACTTAGTGGTGTAGTATCCTTTTCATTTTGATCTGGTTATAAGGTGTTCATGGCCAGCCATTGTTTCCTTATTCCATTTCATCATTCGGTCAAAAGACAAAGAGCTCTAGTATGAGAGGAGTTAACAGATGCTTCTTTACTTTTTATAGGCTTGGTGGAAGGCAAAACTGATTTAGAGAGGGCATTCAGATATGGTAAGTTAGACTACAGTTATTGTTATTTTGTTGTTGAATTTACATGCACTATGCTCATTTTCTTTTGCTGGTATTTTCAGTCGGCACTCTTCAATTTCCACTCCTTTTTGACAGTAGTGCTGTTAGGGATTTGTACATGCACTTATGTGAAGATGCATTTTCCTGCACTACTTGAACAGAGAACTGGGTAAGTCTTCTCTATAAGTAATTTGTTGTAGCTACTGTATAGGAATTTGGCATTGGTGTCAATGTTACCTATGTTGATTCTTAATAATTCATATAGCAGGTCCTTCTTTATTTCCTCTAACTGGTTAGTAAAGACTTAAGATTGGTTTTCTAATTCCTTTATTGTGTGGATACCTGGTTGGAGATACCTTTTTGTAGTGCATTTTCTGAATTTATGCTACTTCTTCTGCCCCATGTTTCTATAATTTTGTCATGGTTGGAATTTCATGTATGATCACATTTAGGTAGTGCAGGTAAGCCTGTTCTACTGTTACTGGGTACTATGTAAACCTATAAGATGGTACATTCTGCTGTTGGACCGTTCTCATAAAGACACATATTAGTCCTCTCCACGCCCCCCCCCCCCCCCCCCCCCCCCGGGACGGCCCCTTCTCCCTTCCTCCTTTAATGTCCTCCCTCAATTGTTTTTTACAACGAAATAACAGGGGCAGTAGAGTAGAGTGACAGGTTAGGATTGGAAGAAGTATCTTAGAAGAAGCGGGGTTCAGGAGAGGCAAATGCTTTGTGAGATCAAAATTCTTATCCCTTTCCATCTTCTGTCTTTCATAAAGTTTAACTCCATAAAATGAAGTTTCTAGTATGGTTTATGTACTAGCAACTCAAGATTGATGATTTTCTTCATGCAATTATCCTACTCCTGAACTATGTATATCCACTATGACAAGCCATATAACCCGTTTTATGCATCATATAGTACTTAGAGAACAGAGAATATGAGGATTTAAGGGTATTAGATGTACTTCTGTTTCTCTGGGGAGATTAGTAGTTACACCTATGTGTAGATGGTTTTTCATTTGAAAATGGCTTTGCTAGGTCAAAAGATGTTAAACTCTTATCCGAAATGTTCTCACTGTGGGGAGAAAAGATCACAAGGGCCCTTTTAATTGGATCTAATTTTTTCGTTGGCTTTCAATGGGCTTCAACATGTTATTTTAAGTTGAGGGAATCTCAGGCATTGACTATTTTGTTTGTCTGGACTCTGATAATTGAATTTTCAGGTTTTGAAGCTAAGAAAGTTGTGTAATGTTTTCTCCAATTTTATCTCCCCCTAATGTTGTGGCTTGTTACTTTATTTTATGTCTTATTTCATTTTATCTCTCTATTCCCTGTATGTTCTTCATCCTAACTAGAAGGTAAACTTGGCAGGTTTCGAGGTTTCTTTTGGAAGGCTGCTAGAATAGGTTAGTTATCTCATCTGCTTGCAGCGAATATTTGTCAGGACTAATTTCCTTATCTTGTTTACAGAATCGAAATTATTTTGCTTATTGTTAAAAACATTGCATGCATTTTCTTAAACAATTCTGGCCTGTATCCTAGTGAAACCACACCATACAATAGGATGTTGATGAAATGCTGAATCACTGCCGAAATGAGGACATACAGTTGACATTTAGGCATCATACTATGACAAAAACGAGTAACATTTTCCTGGCTAAGCATTGTAATTCTCTCATAAGGCATCATCTTGATAGGAAGTTCTTGTAATTCTCCCTTGATTGACCACTTCATAATATTTTTGGAATATCATGATCTTTTTCGCTTCCCTGTTTTTAATGTGACTGGAAGCTTCATCTGTTTGTGTGATTGCATATTGCTTAGATGCCTATTTAACCCATCAAAAGAACCGTCACATAAATGCCTATTTATCTTCATGGTGGTTCTTCATCCTTTTACTTTAACTTTGAACATAAAAATCACTCTTCTCAAAATTTCTCCTATACCTAAAATTTGTAATTCCATTATCATAAAACACATAAATTTTATCTTTTATCCATTTATCCTACCAATGCGTGAATTTGACGAGGTGTTCTATACTTCAATGTGGACAGGTGAACGGTTGAGTCCTTGGGTGGCAGTGGGCTGCTTGACGATGGGTGTTTCAATAATCTTCTTCTGAGAGAACAACTGTTTGCAATTCATGAAAGTACACTCTCAGCTGGGCTTAAATTAGCACTTGAATCTATTTTTCATCAAATGATCTGTTCGATTAAAAGATGGCACGAAACTTGATGTGACACCAACACTGCTTTCTTGATCATGAACTGAGTTTTATCGTGTGGAAATTTTGGATTGTGACAATGTTCGACTCTCTGTTCTGTCCTTTTCTTTAGACTAATTATTTTACTGCAAGTAGTTTTATCAAAAAAGGTAAAAAAAAAAGATTG</genome_strand>
        <mrna_strand>GTGGTTTCCATTGCTTAAATCTTCTTCATCCTTCCGACTCATAGATTTTCTCAAGCTTATTTGGTTATCGAGAGGTGGCTTAGCTTGAGTTTACTCTCCATTGTTGTATTCTCCGAGATCGGAGATAAACGGATTGGATCTGGAGATCAGATACTGTTTTAAAAATCCTCATTTTTCATATATTCACTGCAATTTCGCTTTAGGATCTTGATTTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGTGGAAGGCAAAACTGATTTAGAGAGGGCATTCAGATATG................................................................................TCGGCACTCTTCAATTTCCACTCCTTTTTGACAGTAGTGCTGTTAGGGATTTGTACATGCACTTATGTGAAGATGCATTTTCCTGCACTACTTGAACAGAGAACTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGAGGTTTCTTTTGGAAGGCTGCTAGAATAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACGGTTGAGTCCTTGGGTGGCAGTGGGCTGCTTGACGATGGGTGTTTCAATAATCTTCTTCTGAGAGAACAACTGTTTGCAATTCATGAAAGTACACTCTCAGCTGGGCTTAAATTAGCACTTGAATCTATTTTTCATCAAATGATCTGTTCGATTAAAAGATGGCACGAAACTTGATGTGACACCAACACTGCTTTCTTGATCATGAACTGAGTTTTATCGTGTGGAAATTTTGGATTGTGACAAT....................................................................GTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315325" ref_strand="+" ref_description="SGN-E315325 [cTOA-24-N21]">
      <seq>tttccattgcttaaatcttcttcatccttccgactcatagattttctcaagcttatttggttatcgagaggtggcttagcttgagtttactctccattgttgtattctccgagatcggagataaacggattggatctggagatcagatactgttttaaaaatcctcatttttcatatattcactgcaatttcgctttaggatcttgatttaaggcttggtggaaggcaaaactgatttagagagggcattcagatatgtcggcactcttcaatttccactcctttttgacagtagtgctgttagggatttgtacatgcacttatgtgaagatgcattttcctgcactacttgaacagagaactgggtttcgaggtttcttttggaaggctgctagaataggtgaacggttgagtccttgggtggcagtgggctgcttgacgatgggtgtttcaataatcttcttctgagagaacaactgtttgcaattcatgaaagtacactctcagctgggcttaaattagcacttgaatctatttttcatcaaatgatctgttcgattaaaagatggcacgaaacttgatgtgacaccaacactgctttcttgatcatgaactgagttttatcgtgtggaaattttggattgtgacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="125719" stop="130815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126019" g_stop="126231" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126232" i_stop="128145" i_length="1914">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128146" g_stop="128190" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="258" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128191" i_stop="128270" i_length="80">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128271" g_stop="128377" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="365" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128378" i_stop="129582" i_length="1205">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.330" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129583" g_stop="129617" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="400" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="129618" i_stop="130265" i_length="648">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130266" g_stop="130516" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="651" r_length="251" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E315325" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126019" e_stop="126231"/>
          <exon e_start="128146" e_stop="128190"/>
          <exon e_start="128271" e_stop="128377"/>
          <exon e_start="129583" e_stop="129617"/>
          <exon e_start="130266" e_stop="130516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCATTGCTTAAATCTTCTTCATCCTTCCGACTCATAGATTTTCTCAAGCTTATTTGGTTATCGAGAGGTGGCTTAGCTTGAGTTTACTCTCCATTGTTGTATTCTCCGAGATCGGAGATAAACGGATTGGATCTGGAGATCAGATACTGTTTTAAAAATCCTCATTTTTCATATATTCACTGCAATTTCGCTTTAGGATCTTGATTTAAGGTACCCTTCCGCCGTTTTTTATACCCTTCTCTTTTTTTTTTGGTTATTGCAGATTTTAAATTGCCTTATACAACGACTGCCACTTCGTAATGGATGTAAAGTTCGGGTTTTTACCCAAAAAATATAAAAATTCTTTCTGAGAAAAAAGGGTAGGTTCTTCAAAAGGAGAAATTTTGGTTTATTTAGGAAAAGAAAAAAGAGAAGAAGAAAGTCTGGTCTGAAAACTAAATTTAGTTGAATTTGGTTTGCTGGAGAACTGGGTTTTATTTGGTGGGTTAGGGTTTTGAACCTTTTCTTCAGTTTCTTTTAACCCCTATACCCAGAAAAACATGCAATTACTAACCCGAGTATGAAAACTTGTACTTAGTGTAGGATTTTAGTTAGCTTGCTATTTGCTTTCGAAAGTAATTAACTGGAAATAAATTAGGCAATTAATGTTGGTACTTATTCAGTTTGTTTGGTTTATATAAGTTTACAGAACTTTTGGTAACTTTGCTTCATGTTGGGATCTGATAGACTTTGTTCATGATCCGTTTTCTAGTTGCTTTTAGCTGCTTAATGTTAATGCTTTGTATGATATCAAGTTCTATGTCCTCTTATGTGTTTTAAGTTATGAAACAATGTGGTATTGGAAGTTAATATTGCCTATCAAAGTTACAAATGTAGATTTTGAAAGTTTTTTCTAGCAAGAATTATGGTATGAAGATTCTATATATCATTCTAGTTTAATGAAATTTCGGCAACGGGGCATCAATCAGAACTTGGAAATTTAAGTATTGTGTGGTCAAAGGAGCTTAATGCTGTAAATTTTGCATAACCATAGCTAAGTACCTGACTCCATTATAGGACCAAGACAGTCCTAGTGTCCAAGCTCAAGTTTTCCGATTACGTGCCAGTTCTAAGGTGGTATACGCTATTGAACATATAGACTCTGGTGCTTTAGAAAATTGTAGAGCATTGCAATGAAAGATGTTGCAGAAAAGCATTGGGGCATCTTAGAGATTGGAATAGTAAATGTTGTCCAAGTCTTGCACTGGTTAATCTGGGTTATCTGTAACCTCAAGGCCAAAGTTGAGGTATTAAGCAGGCAGGCTATTGCAGAAAGTCTGCTCGAAATTTGCTGTGCAGTAGCAGCTGGCTAGGATCATTAACATTGAAGAACGGAACTTCAGTGGTAAATGCAATAGTAAGCCGTAGAGTCTTCTCTCCCAAAAGAAAAATGAAGGGGAGAGAAGACTCTAGACAACAAACCATGGTTCTTCAGCATCATACATCACGGAGTTGGGAATATTTCTTTTCCTGATAAATGACGAGAGTTAAACCTGTCATAACTGTTTGAGTGGAAGGGGCCATATAAATACAGTTGCAACTTAAAATATGACTACAAATTATTCCTTTTTTGAGCTTGAATGGAGATTTAATTACCTGGCAGCTCGCAGCTATATGTTCTATACCAAAGTCTCTTTTTGACTATTATATGTTTTTCATTTCGGGGGTATAAATGTTACTTTAAGGTCATTGTGTATATGTATAAGAGTTACAACCTTGGGTCATTAAAGAAAAAGATTATAGAGAAGATTGAATAATTCAGAAGATGACATGTGAGACGATAAATAAGAGCACTGTTCTTGCTCAGTGCAGAAAGCTATTAAGAGACTCAGATTTTTCTTATTTCAAAAGCATTGCTCATGAAACCTTAATGGTTTATGCTTCTACAATCTTTTTATATTTTGTAGGGTTTATTTACTTAATGAATCTAGTGTCAACTTAGTGGTGTAGTATCCTTTTCATTTTGATCTGGTTATAAGGTGTTCATGGCCAGCCATTGTTTCCTTATTCCATTTCATCATTCGGTCAAAAGACAAAGAGCTCTAGTATGAGAGGAGTTAACAGATGCTTCTTTACTTTTTATAGGCTTGGTGGAAGGCAAAACTGATTTAGAGAGGGCATTCAGATATGGTAAGTTAGACTACAGTTATTGTTATTTTGTTGTTGAATTTACATGCACTATGCTCATTTTCTTTTGCTGGTATTTTCAGTCGGCACTCTTCAATTTCCACTCCTTTTTGACAGTAGTGCTGTTAGGGATTTGTACATGCACTTATGTGAAGATGCATTTTCCTGCACTACTTGAACAGAGAACTGGGTAAGTCTTCTCTATAAGTAATTTGTTGTAGCTACTGTATAGGAATTTGGCATTGGTGTCAATGTTACCTATGTTGATTCTTAATAATTCATATAGCAGGTCCTTCTTTATTTCCTCTAACTGGTTAGTAAAGACTTAAGATTGGTTTTCTAATTCCTTTATTGTGTGGATACCTGGTTGGAGATACCTTTTTGTAGTGCATTTTCTGAATTTATGCTACTTCTTCTGCCCCATGTTTCTATAATTTTGTCATGGTTGGAATTTCATGTATGATCACATTTAGGTAGTGCAGGTAAGCCTGTTCTACTGTTACTGGGTACTATGTAAACCTATAAGATGGTACATTCTGCTGTTGGACCGTTCTCATAAAGACACATATTAGTCCTCTCCACGCCCCCCCCCCCCCCCCCCCCCCCCGGGACGGCCCCTTCTCCCTTCCTCCTTTAATGTCCTCCCTCAATTGTTTTTTACAACGAAATAACAGGGGCAGTAGAGTAGAGTGACAGGTTAGGATTGGAAGAAGTATCTTAGAAGAAGCGGGGTTCAGGAGAGGCAAATGCTTTGTGAGATCAAAATTCTTATCCCTTTCCATCTTCTGTCTTTCATAAAGTTTAACTCCATAAAATGAAGTTTCTAGTATGGTTTATGTACTAGCAACTCAAGATTGATGATTTTCTTCATGCAATTATCCTACTCCTGAACTATGTATATCCACTATGACAAGCCATATAACCCGTTTTATGCATCATATAGTACTTAGAGAACAGAGAATATGAGGATTTAAGGGTATTAGATGTACTTCTGTTTCTCTGGGGAGATTAGTAGTTACACCTATGTGTAGATGGTTTTTCATTTGAAAATGGCTTTGCTAGGTCAAAAGATGTTAAACTCTTATCCGAAATGTTCTCACTGTGGGGAGAAAAGATCACAAGGGCCCTTTTAATTGGATCTAATTTTTTCGTTGGCTTTCAATGGGCTTCAACATGTTATTTTAAGTTGAGGGAATCTCAGGCATTGACTATTTTGTTTGTCTGGACTCTGATAATTGAATTTTCAGGTTTTGAAGCTAAGAAAGTTGTGTAATGTTTTCTCCAATTTTATCTCCCCCTAATGTTGTGGCTTGTTACTTTATTTTATGTCTTATTTCATTTTATCTCTCTATTCCCTGTATGTTCTTCATCCTAACTAGAAGGTAAACTTGGCAGGTTTCGAGGTTTCTTTTGGAAGGCTGCTAGAATAGGTTAGTTATCTCATCTGCTTGCAGCGAATATTTGTCAGGACTAATTTCCTTATCTTGTTTACAGAATCGAAATTATTTTGCTTATTGTTAAAAACATTGCATGCATTTTCTTAAACAATTCTGGCCTGTATCCTAGTGAAACCACACCATACAATAGGATGTTGATGAAATGCTGAATCACTGCCGAAATGAGGACATACAGTTGACATTTAGGCATCATACTATGACAAAAACGAGTAACATTTTCCTGGCTAAGCATTGTAATTCTCTCATAAGGCATCATCTTGATAGGAAGTTCTTGTAATTCTCCCTTGATTGACCACTTCATAATATTTTTGGAATATCATGATCTTTTTCGCTTCCCTGTTTTTAATGTGACTGGAAGCTTCATCTGTTTGTGTGATTGCATATTGCTTAGATGCCTATTTAACCCATCAAAAGAACCGTCACATAAATGCCTATTTATCTTCATGGTGGTTCTTCATCCTTTTACTTTAACTTTGAACATAAAAATCACTCTTCTCAAAATTTCTCCTATACCTAAAATTTGTAATTCCATTATCATAAAACACATAAATTTTATCTTTTATCCATTTATCCTACCAATGCGTGAATTTGACGAGGTGTTCTATACTTCAATGTGGACAGGTGAACGGTTGAGTCCTTGGGTGGCAGTGGGCTGCTTGACGATGGGTGTTTCAATAATCTTCTTCTGAGAGAACAACTGTTTGCAATTCATGAAAGTACACTCTCAGCTGGGCTTAAATTAGCACTTGAATCTATTTTTCATCAAATGATCTGTTCGATTAAAAGATGGCACGAAACTTGATGTGACACCAACACTGCTTTCTTGATCATGAACTGAGTTTTATCGTGTGGAAATTTTGGATTGTGACAAT</genome_strand>
        <mrna_strand>TTTCCATTGCTTAAATCTTCTTCATCCTTCCGACTCATAGATTTTCTCAAGCTTATTTGGTTATCGAGAGGTGGCTTAGCTTGAGTTTACTCTCCATTGTTGTATTCTCCGAGATCGGAGATAAACGGATTGGATCTGGAGATCAGATACTGTTTTAAAAATCCTCATTTTTCATATATTCACTGCAATTTCGCTTTAGGATCTTGATTTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGTGGAAGGCAAAACTGATTTAGAGAGGGCATTCAGATATG................................................................................TCGGCACTCTTCAATTTCCACTCCTTTTTGACAGTAGTGCTGTTAGGGATTTGTACATGCACTTATGTGAAGATGCATTTTCCTGCACTACTTGAACAGAGAACTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGAGGTTTCTTTTGGAAGGCTGCTAGAATAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACGGTTGAGTCCTTGGGTGGCAGTGGGCTGCTTGACGATGGGTGTTTCAATAATCTTCTTCTGAGAGAACAACTGTTTGCAATTCATGAAAGTACACTCTCAGCTGGGCTTAAATTAGCACTTGAATCTATTTTTCATCAAATGATCTGTTCGATTAAAAGATGGCACGAAACTTGATGTGACACCAACACTGCTTTCTTGATCATGAACTGAGTTTTATCGTGTGGAAATTTTGGATTGTGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694994" ref_strand="+" ref_description="SGN-E694994 [LH_Ea05F24](-)">
      <seq>attttctcaagcttctttggttatcgagaggtgacttagcttgagtttactctcccttgttatattctccgagatcggagataaacggattggatctggagttcagatactgttataaaaatcctcatttttcatatattcactgcaatttcgctttaggatcttgatttaaggtttggtggaaggcaaaactgatttagagaggaaattcagatatgtcggccctcttcaatttccactcctttttgacagtagtgctcttagggatttgtacatgcacttatgtgaagatgcattttcctgcactacttgaacaaagaactgggtttcgaggtttcttttggaaggctgctagaataggtgaacggttgagtccttgggtggcagtgggctgcttgccgacgggtgtttcaataatcttcttctgagagaacaactgtttgtaattcatgaaagtacacactctcagctgggcttaaattagcacttgaatctatttttcatcaaatgatctgttcgattaaaagatggcccgaaggttgatgtgaccccaacactgctttcttgatcataaaaagggttttatcgtgtggaaattttggattgtgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="125759" stop="130815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126059" g_stop="126231" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126232" i_stop="128145" i_length="1914">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128146" g_stop="128190" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="218" r_length="45" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128191" i_stop="128270" i_length="80">
            <donor d_prob="0.992" d_score="0.93"/>
            <acceptor a_prob="0.955" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128271" g_stop="128377" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="325" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128378" i_stop="129582" i_length="1205">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.330" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129583" g_stop="129617" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="360" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="129618" i_stop="130265" i_length="648">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.835" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130266" g_stop="130516" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="613" r_length="253" r_score="0.932"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="130517" i_stop="130584" i_length="68">
            <donor d_prob="0.540" d_score="0.88"/>
            <acceptor a_prob="0.187" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="130585" g_stop="130594" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="623" r_length="10" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E694994" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126059" e_stop="126231"/>
          <exon e_start="128146" e_stop="128190"/>
          <exon e_start="128271" e_stop="128377"/>
          <exon e_start="129583" e_stop="129617"/>
          <exon e_start="130266" e_stop="130516"/>
          <exon e_start="130585" e_stop="130594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTCAAGCTTATTTGGTTATCGAGAGGTGGCTTAGCTTGAGTTTACTCTCCATTGTTGTATTCTCCGAGATCGGAGATAAACGGATTGGATCTGGAGATCAGATACTGTTTTAAAAATCCTCATTTTTCATATATTCACTGCAATTTCGCTTTAGGATCTTGATTTAAGGTACCCTTCCGCCGTTTTTTATACCCTTCTCTTTTTTTTTTGGTTATTGCAGATTTTAAATTGCCTTATACAACGACTGCCACTTCGTAATGGATGTAAAGTTCGGGTTTTTACCCAAAAAATATAAAAATTCTTTCTGAGAAAAAAGGGTAGGTTCTTCAAAAGGAGAAATTTTGGTTTATTTAGGAAAAGAAAAAAGAGAAGAAGAAAGTCTGGTCTGAAAACTAAATTTAGTTGAATTTGGTTTGCTGGAGAACTGGGTTTTATTTGGTGGGTTAGGGTTTTGAACCTTTTCTTCAGTTTCTTTTAACCCCTATACCCAGAAAAACATGCAATTACTAACCCGAGTATGAAAACTTGTACTTAGTGTAGGATTTTAGTTAGCTTGCTATTTGCTTTCGAAAGTAATTAACTGGAAATAAATTAGGCAATTAATGTTGGTACTTATTCAGTTTGTTTGGTTTATATAAGTTTACAGAACTTTTGGTAACTTTGCTTCATGTTGGGATCTGATAGACTTTGTTCATGATCCGTTTTCTAGTTGCTTTTAGCTGCTTAATGTTAATGCTTTGTATGATATCAAGTTCTATGTCCTCTTATGTGTTTTAAGTTATGAAACAATGTGGTATTGGAAGTTAATATTGCCTATCAAAGTTACAAATGTAGATTTTGAAAGTTTTTTCTAGCAAGAATTATGGTATGAAGATTCTATATATCATTCTAGTTTAATGAAATTTCGGCAACGGGGCATCAATCAGAACTTGGAAATTTAAGTATTGTGTGGTCAAAGGAGCTTAATGCTGTAAATTTTGCATAACCATAGCTAAGTACCTGACTCCATTATAGGACCAAGACAGTCCTAGTGTCCAAGCTCAAGTTTTCCGATTACGTGCCAGTTCTAAGGTGGTATACGCTATTGAACATATAGACTCTGGTGCTTTAGAAAATTGTAGAGCATTGCAATGAAAGATGTTGCAGAAAAGCATTGGGGCATCTTAGAGATTGGAATAGTAAATGTTGTCCAAGTCTTGCACTGGTTAATCTGGGTTATCTGTAACCTCAAGGCCAAAGTTGAGGTATTAAGCAGGCAGGCTATTGCAGAAAGTCTGCTCGAAATTTGCTGTGCAGTAGCAGCTGGCTAGGATCATTAACATTGAAGAACGGAACTTCAGTGGTAAATGCAATAGTAAGCCGTAGAGTCTTCTCTCCCAAAAGAAAAATGAAGGGGAGAGAAGACTCTAGACAACAAACCATGGTTCTTCAGCATCATACATCACGGAGTTGGGAATATTTCTTTTCCTGATAAATGACGAGAGTTAAACCTGTCATAACTGTTTGAGTGGAAGGGGCCATATAAATACAGTTGCAACTTAAAATATGACTACAAATTATTCCTTTTTTGAGCTTGAATGGAGATTTAATTACCTGGCAGCTCGCAGCTATATGTTCTATACCAAAGTCTCTTTTTGACTATTATATGTTTTTCATTTCGGGGGTATAAATGTTACTTTAAGGTCATTGTGTATATGTATAAGAGTTACAACCTTGGGTCATTAAAGAAAAAGATTATAGAGAAGATTGAATAATTCAGAAGATGACATGTGAGACGATAAATAAGAGCACTGTTCTTGCTCAGTGCAGAAAGCTATTAAGAGACTCAGATTTTTCTTATTTCAAAAGCATTGCTCATGAAACCTTAATGGTTTATGCTTCTACAATCTTTTTATATTTTGTAGGGTTTATTTACTTAATGAATCTAGTGTCAACTTAGTGGTGTAGTATCCTTTTCATTTTGATCTGGTTATAAGGTGTTCATGGCCAGCCATTGTTTCCTTATTCCATTTCATCATTCGGTCAAAAGACAAAGAGCTCTAGTATGAGAGGAGTTAACAGATGCTTCTTTACTTTTTATAGGCTTGGTGGAAGGCAAAACTGATTTAGAGAGGGCATTCAGATATGGTAAGTTAGACTACAGTTATTGTTATTTTGTTGTTGAATTTACATGCACTATGCTCATTTTCTTTTGCTGGTATTTTCAGTCGGCACTCTTCAATTTCCACTCCTTTTTGACAGTAGTGCTGTTAGGGATTTGTACATGCACTTATGTGAAGATGCATTTTCCTGCACTACTTGAACAGAGAACTGGGTAAGTCTTCTCTATAAGTAATTTGTTGTAGCTACTGTATAGGAATTTGGCATTGGTGTCAATGTTACCTATGTTGATTCTTAATAATTCATATAGCAGGTCCTTCTTTATTTCCTCTAACTGGTTAGTAAAGACTTAAGATTGGTTTTCTAATTCCTTTATTGTGTGGATACCTGGTTGGAGATACCTTTTTGTAGTGCATTTTCTGAATTTATGCTACTTCTTCTGCCCCATGTTTCTATAATTTTGTCATGGTTGGAATTTCATGTATGATCACATTTAGGTAGTGCAGGTAAGCCTGTTCTACTGTTACTGGGTACTATGTAAACCTATAAGATGGTACATTCTGCTGTTGGACCGTTCTCATAAAGACACATATTAGTCCTCTCCACGCCCCCCCCCCCCCCCCCCCCCCCCGGGACGGCCCCTTCTCCCTTCCTCCTTTAATGTCCTCCCTCAATTGTTTTTTACAACGAAATAACAGGGGCAGTAGAGTAGAGTGACAGGTTAGGATTGGAAGAAGTATCTTAGAAGAAGCGGGGTTCAGGAGAGGCAAATGCTTTGTGAGATCAAAATTCTTATCCCTTTCCATCTTCTGTCTTTCATAAAGTTTAACTCCATAAAATGAAGTTTCTAGTATGGTTTATGTACTAGCAACTCAAGATTGATGATTTTCTTCATGCAATTATCCTACTCCTGAACTATGTATATCCACTATGACAAGCCATATAACCCGTTTTATGCATCATATAGTACTTAGAGAACAGAGAATATGAGGATTTAAGGGTATTAGATGTACTTCTGTTTCTCTGGGGAGATTAGTAGTTACACCTATGTGTAGATGGTTTTTCATTTGAAAATGGCTTTGCTAGGTCAAAAGATGTTAAACTCTTATCCGAAATGTTCTCACTGTGGGGAGAAAAGATCACAAGGGCCCTTTTAATTGGATCTAATTTTTTCGTTGGCTTTCAATGGGCTTCAACATGTTATTTTAAGTTGAGGGAATCTCAGGCATTGACTATTTTGTTTGTCTGGACTCTGATAATTGAATTTTCAGGTTTTGAAGCTAAGAAAGTTGTGTAATGTTTTCTCCAATTTTATCTCCCCCTAATGTTGTGGCTTGTTACTTTATTTTATGTCTTATTTCATTTTATCTCTCTATTCCCTGTATGTTCTTCATCCTAACTAGAAGGTAAACTTGGCAGGTTTCGAGGTTTCTTTTGGAAGGCTGCTAGAATAGGTTAGTTATCTCATCTGCTTGCAGCGAATATTTGTCAGGACTAATTTCCTTATCTTGTTTACAGAATCGAAATTATTTTGCTTATTGTTAAAAACATTGCATGCATTTTCTTAAACAATTCTGGCCTGTATCCTAGTGAAACCACACCATACAATAGGATGTTGATGAAATGCTGAATCACTGCCGAAATGAGGACATACAGTTGACATTTAGGCATCATACTATGACAAAAACGAGTAACATTTTCCTGGCTAAGCATTGTAATTCTCTCATAAGGCATCATCTTGATAGGAAGTTCTTGTAATTCTCCCTTGATTGACCACTTCATAATATTTTTGGAATATCATGATCTTTTTCGCTTCCCTGTTTTTAATGTGACTGGAAGCTTCATCTGTTTGTGTGATTGCATATTGCTTAGATGCCTATTTAACCCATCAAAAGAACCGTCACATAAATGCCTATTTATCTTCATGGTGGTTCTTCATCCTTTTACTTTAACTTTGAACATAAAAATCACTCTTCTCAAAATTTCTCCTATACCTAAAATTTGTAATTCCATTATCATAAAACACATAAATTTTATCTTTTATCCATTTATCCTACCAATGCGTGAATTTGACGAGGTGTTCTATACTTCAATGTGGACAGGTGAACGGTTGAGTCCTTGGGTGGCAGTGGGCTGCTTGACGATGGGTGTTTCAATAATCTTCTTCTGAGAGAACAACTGTTTGCAATTCATGAAAGT--ACACTCTCAGCTGGGCTTAAATTAGCACTTGAATCTATTTTTCATCAAATGATCTGTTCGATTAAAAGATGGCACGAAACTTGATGTGACACCAACACTGCTTTCTTGATCATGAACTGAGTTTTATCGTGTGGAAATTTTGGATTGTGACAATGTTCGACTCTCTGTTCTGTCCTTTTCTTTAGACTAATTATTTTACTGCAAGTAGTTTTATCAAAAAAGGTAAAAAAAA</genome_strand>
        <mrna_strand>ATTTTCTCAAGCTTCTTTGGTTATCGAGAGGTGACTTAGCTTGAGTTTACTCTCCCTTGTTATATTCTCCGAGATCGGAGATAAACGGATTGGATCTGGAGTTCAGATACTGTTATAAAAATCCTCATTTTTCATATATTCACTGCAATTTCGCTTTAGGATCTTGATTTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGAAGGCAAAACTGATTTAGAGAGGAAATTCAGATATG................................................................................TCGGCCCTCTTCAATTTCCACTCCTTTTTGACAGTAGTGCTCTTAGGGATTTGTACATGCACTTATGTGAAGATGCATTTTCCTGCACTACTTGAACAAAGAACTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGAGGTTTCTTTTGGAAGGCTGCTAGAATAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACGGTTGAGTCCTTGGGTGGCAGTGGGCTGCTTGCCGACGGGTGTTTCAATAATCTTCTTCTGAGAGAACAACTGTTTGTAATTCATGAAAGTACACACTCTCAGCTGGGCTTAAATTAGCACTTGAATCTATTTTTCATCAAATGATCTGTTCGATTAAAAGATGGCCCGAAGGTTGATGTGACCCCAACACTGCTTTCTTGATCATAAAAAGGGTTTTATCGTGTGGAAATTTTGGATTGTGAAAAA....................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234710" ref_strand="+" ref_description="SGN-E234710 [cLEL-6-F6](-)">
      <seq>ggcaccagcaataatcttcttctgagagaacaactgtttgcaattcatgaaagtacactctcagctgggcttaaattagcacttgaatctatttttcatcaaatgatctgttcgattaaaagatggcacgaaacttgatgtgacaccaacactgctttcttgatcatgaactgagttttatcgtgtggaaattttggattgtgacaatgttcgnctctcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="130017" stop="130827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130309" g_stop="130528" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="221" polyA_stop="237"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E234710" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>220</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130309" e_stop="130528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGTTTCAATAATCTTCTTCTGAGAGAACAACTGTTTGCAATTCATGAAAGTACACTCTCAGCTGGGCTTAAATTAGCACTTGAATCTATTTTTCATCAAATGATCTGTTCGATTAAAAGATGGCACGAAACTTGATGTGACACCAACACTGCTTTCTTGATCATGAACTGAGTTTTATCGTGTGGAAATTTTGGATTGTGACAATGTTCGACTCTCT</genome_strand>
        <mrna_strand>GGCACCAGCAATAATCTTCTTCTGAGAGAACAACTGTTTGCAATTCATGAAAGTACACTCTCAGCTGGGCTTAAATTAGCACTTGAATCTATTTTTCATCAAATGATCTGTTCGATTAAAAGATGGCACGAAACTTGATGTGACACCAACACTGCTTTCTTGATCATGAACTGAGTTTTATCGTGTGGAAATTTTGGATTGTGACAATGTTCGNCTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216082" ref_strand="+" ref_description="SGN-E216082 [cLEL-13-C7](-)">
      <seq>ggcaccagcaataatcttcttctgagagaacaactgtttgcaattcatgaaagtacactctcagctgggcttaaattagcacttgaatctatttttcatcaaatgatctgttcgattaaaagatggcacgaaacttgatgtgacaccaacactgctttcttgatcatgaactgagttttatcgtgtggaaattttggattgtgacaatgttcgactctcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="130017" stop="130827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130309" g_stop="130528" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="221" polyA_stop="237"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E216082" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>220</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130309" e_stop="130528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGTTTCAATAATCTTCTTCTGAGAGAACAACTGTTTGCAATTCATGAAAGTACACTCTCAGCTGGGCTTAAATTAGCACTTGAATCTATTTTTCATCAAATGATCTGTTCGATTAAAAGATGGCACGAAACTTGATGTGACACCAACACTGCTTTCTTGATCATGAACTGAGTTTTATCGTGTGGAAATTTTGGATTGTGACAATGTTCGACTCTCT</genome_strand>
        <mrna_strand>GGCACCAGCAATAATCTTCTTCTGAGAGAACAACTGTTTGCAATTCATGAAAGTACACTCTCAGCTGGGCTTAAATTAGCACTTGAATCTATTTTTCATCAAATGATCTGTTCGATTAAAAGATGGCACGAAACTTGATGTGACACCAACACTGCTTTCTTGATCATGAACTGAGTTTTATCGTGTGGAAATTTTGGATTGTGACAATGTTCGACTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216185" ref_strand="+" ref_description="SGN-E216185 [cLEL-13-C7](-)">
      <seq>ggcaccagcaataatcttcttctgagagaacaactgtttgcaattcatgaaagtacactctcagctgggcttaaattagcacttgaatctatttttcatcaaatgatctgttcgattaaaagatggcacgaaacttgatgtgacaccaacactgctttcttgatcatgaactgagttttatcgtgtggaaattttggattgtgacaatgttcgactctcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="130017" stop="130827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130309" g_stop="130528" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="221" polyA_stop="237"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E216185" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>220</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130309" e_stop="130528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGTTTCAATAATCTTCTTCTGAGAGAACAACTGTTTGCAATTCATGAAAGTACACTCTCAGCTGGGCTTAAATTAGCACTTGAATCTATTTTTCATCAAATGATCTGTTCGATTAAAAGATGGCACGAAACTTGATGTGACACCAACACTGCTTTCTTGATCATGAACTGAGTTTTATCGTGTGGAAATTTTGGATTGTGACAATGTTCGACTCTCT</genome_strand>
        <mrna_strand>GGCACCAGCAATAATCTTCTTCTGAGAGAACAACTGTTTGCAATTCATGAAAGTACACTCTCAGCTGGGCTTAAATTAGCACTTGAATCTATTTTTCATCAAATGATCTGTTCGATTAAAAGATGGCACGAAACTTGATGTGACACCAACACTGCTTTCTTGATCATGAACTGAGTTTTATCGTGTGGAAATTTTGGATTGTGACAATGTTCGACTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234998" ref_strand="+" ref_description="SGN-E234998 [cLEL-6-F6](-)">
      <seq>ggcaccagcaataatcttcttctgagagaacaactgtttgcaattcatgaaagtacactctcagctgggcttaaattagcacttgaatctatttttcatcaaatgatctgttcgattaaaagatggcacgaaacttgatgtgacaccaacactgctttcttgatcatgaactgagttttatcgtgtggaaattttggattgtgacaatgttcgactctcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="130017" stop="130827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130309" g_stop="130528" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="221" polyA_stop="237"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E234998" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>220</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130309" e_stop="130528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGTTTCAATAATCTTCTTCTGAGAGAACAACTGTTTGCAATTCATGAAAGTACACTCTCAGCTGGGCTTAAATTAGCACTTGAATCTATTTTTCATCAAATGATCTGTTCGATTAAAAGATGGCACGAAACTTGATGTGACACCAACACTGCTTTCTTGATCATGAACTGAGTTTTATCGTGTGGAAATTTTGGATTGTGACAATGTTCGACTCTCT</genome_strand>
        <mrna_strand>GGCACCAGCAATAATCTTCTTCTGAGAGAACAACTGTTTGCAATTCATGAAAGTACACTCTCAGCTGGGCTTAAATTAGCACTTGAATCTATTTTTCATCAAATGATCTGTTCGATTAAAAGATGGCACGAAACTTGATGTGACACCAACACTGCTTTCTTGATCATGAACTGAGTTTTATCGTGTGGAAATTTTGGATTGTGACAATGTTCGACTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246975" ref_strand="+" ref_description="SGN-E246975 [cLEF-41-K19]">
      <seq>aaagacttgtcttcttcatttggcacttctgtgtgcagataattaagtaactacactgaatctcagtttggtaactcacataccatggagatatcacaaagttggagcaaaattagtcctcagctccatagctcacactccttggagatttcattaggagaaagagggcatctactagcagtggaaatgaatgatattaaaggtgcaacagaaactaagattgaggttagggaactgaacaaggtatcagataagggtgattctatactgaagagtgttagagttgacataacaagaggagtaatcatggggattattggccccagtggtagcggaaaatcaacaattttacgagcgctaaatcgattatgggaacccctaagggcactgtttttcttgatggtactgatatttgtgatctggatgtgctctgtcttcgtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="132494" stop="133883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132794" g_stop="132950" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132951" i_stop="133297" i_length="347">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133298" g_stop="133583" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="443" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E246975" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132794" e_stop="132950"/>
          <exon e_start="133298" e_stop="133583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACTTGTCTTCTTCATTTGGCACTTCTGTGTGCAGATAATTAAGTAACTACACTGAATCTCAGTTTGGTAACTCACATACCATGGAGATATCACAAAGTTGGAGCAAAATTAGTCCTCAGCTCCATAGCTCACACTCCTTGGAGATTTCATTAGGTATGTTGAAGCAAAACTCATCATCTATATGATTCTAGTGTACGTTATAATTAAAAAAAGGATCTAGTTAATCCATTTCAAGACTTCTTTTGGGGGGCCTTAGATAAATTCAGATTCACCATGAAAATTCTCACTTTTGATGGAATAGTTTGGGTGTGCCTCAACTAATTTTACGAATATGTGCTACCTCTAACCTTTCTTTTAATGTTTCATCAAAATGCTTTAACATAGATTATTTTCCTGCTAAGTAAAATAAAATGTTTTGTTGATGAATGATGAAATGTAATTGGACTTTAGAATTGTATAGTCATTTTTTCTTTCTTGAAATCTGTGACAATGGTGAGCAGGAGAAAGAGGGCATCTACTAGCAGTGGAAATGAATGATATTAAAGGTGCAACAGAAACTAAGATTGAGGTTAGGGAACTGAACAAGGTATCAGATAAGGGTGATTCTATACTGAAGAGTGTTAGAGTTGACATAACAAGAGGAGTAATCATGGGGATTATTGGCCCCAGTGGTAGCGGAAAATCAACAATTTTACGAGCGCTAAATCGATTATGGGAACCCCTAAGGGCACTGTTTTTCTTGATGGTACTGATATTTGTGATCTGGATGTGCTCTGTCTTCGTCGT</genome_strand>
        <mrna_strand>AAAGACTTGTCTTCTTCATTTGGCACTTCTGTGTGCAGATAATTAAGTAACTACACTGAATCTCAGTTTGGTAACTCACATACCATGGAGATATCACAAAGTTGGAGCAAAATTAGTCCTCAGCTCCATAGCTCACACTCCTTGGAGATTTCATTAG...........................................................................................................................................................................................................................................................................................................................................................GAGAAAGAGGGCATCTACTAGCAGTGGAAATGAATGATATTAAAGGTGCAACAGAAACTAAGATTGAGGTTAGGGAACTGAACAAGGTATCAGATAAGGGTGATTCTATACTGAAGAGTGTTAGAGTTGACATAACAAGAGGAGTAATCATGGGGATTATTGGCCCCAGTGGTAGCGGAAAATCAACAATTTTACGAGCGCTAAATCGATTATGGGAACCCCTAAGGGCACTGTTTTTCTTGATGGTACTGATATTTGTGATCTGGATGTGCTCTGTCTTCGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259979" ref_strand="+" ref_description="SGN-E259979 [cLEG-51-N7]">
      <seq>ctgtgtgcagataattaagtaactacactgaatctcagtttggtaactcacataccatggagatatcacaaagttggagcaaaattagtcctcagctccatagctcacactccttggagatttcattaggagaaagagggcatctactagcagtggaaatgaatgatattaaaggtgcaacagaaactaagattgaggttagggaactgaacaaggtatcagataagggtgattctatactgaagagtgttagagttgacataacaagaggagtaatcatggggattattggccccagtggtagcggaaaatcaacaattttacgagcgctaaatcgattatgggaacccctaagggcactgtttttcttgatggtactgatatttgtgatctggatgtgctctgtcttcgtcgtaaggttggcatgttgttccagcttccagttctctttgaaggtatggttgttaaattgctaagatcaaactaaaaacgctaacctattagtaaattagacagacttgaacttgaccaatttgaaagttcactgtgtctgatacnatcacagtaactactgatgcttgattcatgaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="132522" stop="134061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132822" g_stop="132950" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132951" i_stop="133297" i_length="347">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133298" g_stop="133761" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="593" r_length="464" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E259979" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132822" e_stop="132950"/>
          <exon e_start="133298" e_stop="133761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGTGCAGATAATTAAGTAACTACACTGAATCTCAGTTTGGTAACTCACATACCATGGAGATATCACAAAGTTGGAGCAAAATTAGTCCTCAGCTCCATAGCTCACACTCCTTGGAGATTTCATTAGGTATGTTGAAGCAAAACTCATCATCTATATGATTCTAGTGTACGTTATAATTAAAAAAAGGATCTAGTTAATCCATTTCAAGACTTCTTTTGGGGGGCCTTAGATAAATTCAGATTCACCATGAAAATTCTCACTTTTGATGGAATAGTTTGGGTGTGCCTCAACTAATTTTACGAATATGTGCTACCTCTAACCTTTCTTTTAATGTTTCATCAAAATGCTTTAACATAGATTATTTTCCTGCTAAGTAAAATAAAATGTTTTGTTGATGAATGATGAAATGTAATTGGACTTTAGAATTGTATAGTCATTTTTTCTTTCTTGAAATCTGTGACAATGGTGAGCAGGAGAAAGAGGGCATCTACTAGCAGTGGAAATGAATGATATTAAAGGTGCAACAGAAACTAAGATTGAGGTTAGGGAACTGAACAAGGTATCAGATAAGGGTGATTCTATACTGAAGAGTGTTAGAGTTGACATAACAAGAGGAGTAATCATGGGGATTATTGGCCCCAGTGGTAGCGGAAAATCAACAATTTTACGAGCGCTAAATCGATTATGGGAACCCCTAAGGGCACTGTTTTTCTTGATGGTACTGATATTTGTGATCTGGATGTGCTCTGTCTTCGTCGTAAGGTTGGCATGTTGTTCCAGCTTCCAGTTCTCTTTGAAGGTATGGTTGTTAAATTGCTAAGATCAAACTAAAAACGCTAACCTATTAGTAAATTAGACAGACTTGAACTTGACCAATTTGAAAGTTCACTGTGTCTGATACAATCACAGTAACTACTGATGCTTGATTCATGAATAT</genome_strand>
        <mrna_strand>CTGTGTGCAGATAATTAAGTAACTACACTGAATCTCAGTTTGGTAACTCACATACCATGGAGATATCACAAAGTTGGAGCAAAATTAGTCCTCAGCTCCATAGCTCACACTCCTTGGAGATTTCATTAG...........................................................................................................................................................................................................................................................................................................................................................GAGAAAGAGGGCATCTACTAGCAGTGGAAATGAATGATATTAAAGGTGCAACAGAAACTAAGATTGAGGTTAGGGAACTGAACAAGGTATCAGATAAGGGTGATTCTATACTGAAGAGTGTTAGAGTTGACATAACAAGAGGAGTAATCATGGGGATTATTGGCCCCAGTGGTAGCGGAAAATCAACAATTTTACGAGCGCTAAATCGATTATGGGAACCCCTAAGGGCACTGTTTTTCTTGATGGTACTGATATTTGTGATCTGGATGTGCTCTGTCTTCGTCGTAAGGTTGGCATGTTGTTCCAGCTTCCAGTTCTCTTTGAAGGTATGGTTGTTAAATTGCTAAGATCAAACTAAAAACGCTAACCTATTAGTAAATTAGACAGACTTGAACTTGACCAATTTGAAAGTTCACTGTGTCTGATACNATCACAGTAACTACTGATGCTTGATTCATGAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257865" ref_strand="+" ref_description="SGN-E257865 [cLEG-39-J7]">
      <seq>cgagtttttttttttttttttttttagagaatatcattcttggtgatattaattcatatttctatttaaaacctttacaagaatttgccccgtttttcttggttgcgccatcggaaagattgtcgtgggaggtaaaataccttttttattaaagtgtatttttctacacgtagtttcagtagctaaattaacctcagttaagattggctcactcgaatgggttgagattcttccatattttggtgacttgaatctctcttgctaaccattatcatgcttctccgctagttcgtgccttgatgtactttccttgtccctggttctacttttcgcctaaaatacactaggagctgagttgaagaaatcttagtgccatgggatgcttaccttcagagagttgatcaggctttataatttccacaatgtccccatcaaccagcaggcacactatatcagctattctctgtatttgcttgatgctatgagaaactatcacaattgtcatcttctgatccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="-" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="134908" stop="133812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134630" g_stop="134112" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="-" ref_id="SGN-E257865" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134630" e_stop="134112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTTGAGTACATGTTGAAGTTTTAGAGAATATCATTCTTGGTGATATTAATTCATATTTCTATTTAAAACCTTTACAAGAATTTGCCCCGTTTTTCTTGGTTGCGCCATCGGAAAGATTGTCGTGGGAGGTAAAATACCTTTTTTATTAAAGTGTATTTTTCTACACGTAGTTTCAGTAGCTAAATTAACCTCAGTTAAGATTGGCTCACTCGAATGGGTTGAGATTCTTCCATATTTTGGTGACTTGAATCTCTCTTGCTAACCATTATCATGCTTCTCCGCTAGTTCGTGCCTTGATGTACTTTCCTTGTCCCTGGTTCTACTTTTCGCCTAAAATACACTAGGAGCTGAGTTGAAGAAATCTTAGTGCCATGGGATGCTTAGCTTCAGAGAGTTGATCAGGCTTTATAATTTCCACAATCTCCCCATCAACCAGCAGGCACACTATATCAGCTATTCTCTGTATTTGCTTGATGCTATGAGAAACTATCACAATTGTCATCTTCTGATCCTTC</genome_strand>
        <mrna_strand>CGAGTTT-TTTTTTTTTTTTTTTTTTAGAGAATATCATTCTTGGTGATATTAATTCATATTTCTATTTAAAACCTTTACAAGAATTTGCCCCGTTTTTCTTGGTTGCGCCATCGGAAAGATTGTCGTGGGAGGTAAAATACCTTTTTTATTAAAGTGTATTTTTCTACACGTAGTTTCAGTAGCTAAATTAACCTCAGTTAAGATTGGCTCACTCGAATGGGTTGAGATTCTTCCATATTTTGGTGACTTGAATCTCTCTTGCTAACCATTATCATGCTTCTCCGCTAGTTCGTGCCTTGATGTACTTTCCTTGTCCCTGGTTCTACTTTTCGCCTAAAATACACTAGGAGCTGAGTTGAAGAAATCTTAGTGCCATGGGATGCTTACCTTCAGAGAGTTGATCAGGCTTTATAATTTCCACAATGTCCCCATCAACCAGCAGGCACACTATATCAGCTATTCTCTGTATTTGCTTGATGCTATGAGAAACTATCACAATTGTCATCTTCTGATCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377496" ref_strand="+" ref_description="SGN-E377496 [TUS-20-L7]">
      <seq>agaaacaagtataaaaaaaaggggggaaaaggcaaccctagtgctggagttgaactcagttggaaagcagcccataccttcaccctaaaagtgggatgaaatttaaatctgttaactctggtatctcatttacaaagtcagttatctcctacactttgatgtagacttcacacaaatttttgtcactttgggcttttgttttctgttttatatttttgaagctcttcctgggaacgctcgagcctacacatcaagtaaacagacgcttcaagactactatttatgatatccaaaattaacaggcaagattaatgtataatcataatgataatacctccatcgtaaatcagcaacttcacgatgtaaatccctctccctgtcaagagctgcctccaactacagagaaagagagaagggtgttatatagtatgttggatcctccaagaaataaagaaacgagagaaattataggatagtaattcctggttatggttgaatttgcggaggatgtcgcaacaagattagtacaaatccataccagtgatttctctactccagctgaatttgatggattacatcctgcatccatggcaaggttagctgaacagatgaagttagacctttcatatagataagatacacaaaaattcaagaggcattagttgctgcacctgtggagtcggccacttgcctcattgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="134352" stop="135651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134652" g_stop="135351" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E377496" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134652" e_stop="135351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACAAGTATAAAAAAAAGGGGGGAAAAGGCAACCCTAGTGCTGGAGTTGAACTCAGTTGGAAAGCAGCCCATACCTTCACCCTAAAAGTGGGATGAAATTTAAATCTGTTAACTCTGGTATCTCATTTACAAAGTCAGTTATCTCCTACACTTTGATGTAGACTTCACACAAATTTTTGTCACTTTGGGCTTTTGTTTTCTGTTTTATATTTTTGAAGCTCTTCCTGGGAACGCTCGAGCCTACACATCAAGTAAACAGACGCTTCAAGACTACTATTTATGATATCCAAAATTAACAGGCAAGATTAATGTATAATCATAATGATAATACCTCCATCGTAAATCAGCAACTTCACGATGTAAATCCCTCTCCCTGTCAAGAGCTGCCTCCAACTACAGAGAAAGAGAGAAGGGTGTTATATAGTATGTTGGATCCTCCAAGAAATAAAGAAACGAGAGAAATTATAGGATAGTAATTCCTGGTTATGGTTGAATTTGCGGAGGATGTCGCAACAAGATTAGTACAAATCCATACCAGTGATTTCTCTACTCCAGCTGAATTTGATGGATTACATCCTGCATCCATGGCAAGGTTAGCTGAACAGATGAAGTTAGACCTTTCATATAGATAAGATACACAAAAATTCAAGAGGCATTAGTTGCTGCACCTGTGGAGTCGGCCACTTGCCTCATTGCA</genome_strand>
        <mrna_strand>AGAAACAAGTATAAAAAAAAGGGGGGAAAAGGCAACCCTAGTGCTGGAGTTGAACTCAGTTGGAAAGCAGCCCATACCTTCACCCTAAAAGTGGGATGAAATTTAAATCTGTTAACTCTGGTATCTCATTTACAAAGTCAGTTATCTCCTACACTTTGATGTAGACTTCACACAAATTTTTGTCACTTTGGGCTTTTGTTTTCTGTTTTATATTTTTGAAGCTCTTCCTGGGAACGCTCGAGCCTACACATCAAGTAAACAGACGCTTCAAGACTACTATTTATGATATCCAAAATTAACAGGCAAGATTAATGTATAATCATAATGATAATACCTCCATCGTAAATCAGCAACTTCACGATGTAAATCCCTCTCCCTGTCAAGAGCTGCCTCCAACTACAGAGAAAGAGAGAAGGGTGTTATATAGTATGTTGGATCCTCCAAGAAATAAAGAAACGAGAGAAATTATAGGATAGTAATTCCTGGTTATGGTTGAATTTGCGGAGGATGTCGCAACAAGATTAGTACAAATCCATACCAGTGATTTCTCTACTCCAGCTGAATTTGATGGATTACATCCTGCATCCATGGCAAGGTTAGCTGAACAGATGAAGTTAGACCTTTCATATAGATAAGATACACAAAAATTCAAGAGGCATTAGTTGCTGCACCTGTGGAGTCGGCCACTTGCCTCATTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231959" ref_strand="+" ref_description="SGN-E231959 [cLED-7-C19]">
      <seq>agaaacaagtataaaaaaaaggggggaaaaggcaaccctagtgctggagttgaactcagttggaaagcagcccataccttcaccctaaaagtgggatgaaatttaaatctgttaactctggtatctcatttacaaagtcagttatctcctacactttgatgtagacttcacacaaatttttgtcactttgggcttttgttttctgttttatatttttgaagctcttcctgggaacgctcgagcctacacatcaagtaaacagacgcttcaagactactatttatgatatcccaaatttaacaggcaggattaatgtataatcataatgataatacctccatcgtaaatcagcaacttcacgatgtaaatccctctccctgtcaagagctgcctccaactacagagaaagagagaagggtgttatatagtatgttggatcctccaagaaataaagaaacgagagaaattataggatagtaattcctggttatggttgaatttgcggaggatgtcgcaacaagattagtacaaatccataccagtgatttctctactccagctgaatttgatggattaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="134352" stop="135528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134652" g_stop="135228" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E231959" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134652" e_stop="135228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACAAGTATAAAAAAAAGGGGGGAAAAGGCAACCCTAGTGCTGGAGTTGAACTCAGTTGGAAAGCAGCCCATACCTTCACCCTAAAAGTGGGATGAAATTTAAATCTGTTAACTCTGGTATCTCATTTACAAAGTCAGTTATCTCCTACACTTTGATGTAGACTTCACACAAATTTTTGTCACTTTGGGCTTTTGTTTTCTGTTTTATATTTTTGAAGCTCTTCCTGGGAACGCTCGAGCCTACACATCAAGTAAACAGACGCTTCAAGACTACTATTTATGATAT-CCAAAATTAACAGGCAAGATTAATGTATAATCATAATGATAATACCTCCATCGTAAATCAGCAACTTCACGATGTAAATCCCTCTCCCTGTCAAGAGCTGCCTCCAACTACAGAGAAAGAGAGAAGGGTGTTATATAGTATGTTGGATCCTCCAAGAAATAAAGAAACGAGAGAAATTATAGGATAGTAATTCCTGGTTATGGTTGAATTTGCGGAGGATGTCGCAACAAGATTAGTACAAATCCATACCAGTGATTTCTCTACTCCAGCTGAATTTGATGGATTACA</genome_strand>
        <mrna_strand>AGAAACAAGTATAAAAAAAAGGGGGGAAAAGGCAACCCTAGTGCTGGAGTTGAACTCAGTTGGAAAGCAGCCCATACCTTCACCCTAAAAGTGGGATGAAATTTAAATCTGTTAACTCTGGTATCTCATTTACAAAGTCAGTTATCTCCTACACTTTGATGTAGACTTCACACAAATTTTTGTCACTTTGGGCTTTTGTTTTCTGTTTTATATTTTTGAAGCTCTTCCTGGGAACGCTCGAGCCTACACATCAAGTAAACAGACGCTTCAAGACTACTATTTATGATATCCCAAATTTAACAGGCAGGATTAATGTATAATCATAATGATAATACCTCCATCGTAAATCAGCAACTTCACGATGTAAATCCCTCTCCCTGTCAAGAGCTGCCTCCAACTACAGAGAAAGAGAGAAGGGTGTTATATAGTATGTTGGATCCTCCAAGAAATAAAGAAACGAGAGAAATTATAGGATAGTAATTCCTGGTTATGGTTGAATTTGCGGAGGATGTCGCAACAAGATTAGTACAAATCCATACCAGTGATTTCTCTACTCCAGCTGAATTTGATGGATTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377495" ref_strand="+" ref_description="SGN-E377495 [TUS-20-L7](-)">
      <seq>ttaacaggcaagattaatgtataatcataatgataatacctccatcgtaaatcagcaacttcacgatgtaaatccctctccctgtcaagagctgcctccaactacagagaaagagagaagggtgttatatagtatgttggatcctccaagaaataaagaaacgagagaaattataggatagtaattcctggttatggttgaatttgcggaggatgtcgcaacaagattagtacaaatccataccagtgatttctctactccagctgaatttgatggattacatcctgcatccatggcaaggttagctgaacagatgaagttagacctttcatatagataagatacacaaaaattcaagaggcattagttgctgcacctgtggagtcggccacttgcctcattgcactaagaatactctcctgttaaaataaaaacagttttacaacgtttttaagcagaacaaaaaaacttagcaagtcataattttagatccattcttactcttccaataatagttgcctgtaaagcattctgcaacactgggaatatggactgggaagaatgattagctggtgtaggatcactcggcaatggttgagtagcagtcagattttctggagtcgcctgcataatccataacttcttttcataaaaacaataaagaaaacggaaaagaagctgagataagatcagtggtttaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0309D09-G9qzR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0309D09.1" temp_strand="+" temp_description="C06HBa0309D09.1  AC211077.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0309D09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="134647" stop="135951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134947" g_stop="135641" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="700" polyA_stop="719"/>
      <MATCH_line gen_id="C06HBa0309D09.1" gen_strand="+" ref_id="SGN-E377495" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0309D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134947" e_stop="135641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACAGGCAAGATTAATGTATAATCATAATGATAATACCTCCATCGTAAATCAGCAACTTCACGATGTAAATCCCTCTCCCTGTCAAGAGCTGCCTCCAACTACAGAGAAAGAGAGAAGGGTGTTATATAGTATGTTGGATCCTCCAAGAAATAAAGAAACGAGAGAAATTATAGGATAGTAATTCCTGGTTATGGTTGAATTTGCGGAGGATGTCGCAACAAGATTAGTACAAATCCATACCAGTGATTTCTCTACTCCAGCTGAATTTGATGGATTACATCCTGCATCCATGGCAAGGTTAGCTGAACAGATGAAGTTAGACCTTTCATATAGATAAGATACACAAAAATTCAAGAGGCATTAGTTGCTGCACCTGTGGAGTCGGCCACTTGCCTCATTGCACTAAGAATACTCTCCTGTTAAAATAAAAACAGTTTTACAACGTTTCTAAGCAGAACAAAAAAACTTAGCAAGTCATAATTTTAGATCCATTCTTACTCTTCCAATAATAGTTGCCTGTAAAGCATTCTGCAACACTGGGAATATGGACTGGGAAGAATGATTAGCTGGTGTAGGATCACTCGGCAATGGTTGAGTAGCAGTCAGATTTTCTGGAGTCGCCTGCATAATCCATAACTTCTTTTCATAAAAACAATAAAGAAAACGGAAAAGAAGCTGAGATAAGATCAGTG</genome_strand>
        <mrna_strand>TTAACAGGCAAGATTAATGTATAATCATAATGATAATACCTCCATCGTAAATCAGCAACTTCACGATGTAAATCCCTCTCCCTGTCAAGAGCTGCCTCCAACTACAGAGAAAGAGAGAAGGGTGTTATATAGTATGTTGGATCCTCCAAGAAATAAAGAAACGAGAGAAATTATAGGATAGTAATTCCTGGTTATGGTTGAATTTGCGGAGGATGTCGCAACAAGATTAGTACAAATCCATACCAGTGATTTCTCTACTCCAGCTGAATTTGATGGATTACATCCTGCATCCATGGCAAGGTTAGCTGAACAGATGAAGTTAGACCTTTCATATAGATAAGATACACAAAAATTCAAGAGGCATTAGTTGCTGCACCTGTGGAGTCGGCCACTTGCCTCATTGCACTAAGAATACTCTCCTGTTAAAATAAAAACAGTTTTACAACGTTTTTAAGCAGAACAAAAAAACTTAGCAAGTCATAATTTTAGATCCATTCTTACTCTTCCAATAATAGTTGCCTGTAAAGCATTCTGCAACACTGGGAATATGGACTGGGAAGAATGATTAGCTGGTGTAGGATCACTCGGCAATGGTTGAGTAGCAGTCAGATTTTCTGGAGTCGCCTGCATAATCCATAACTTCTTTTCATAAAAACAATAAAGAAAACGGAAAAGAAGCTGAGATAAGATCAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>220</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="650" PGL_stop="3565"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="650" e_stop="836"/>
            <exon e_start="1714" e_stop="2102"/>
            <exon e_start="2294" e_stop="2535"/>
            <exon e_start="2777" e_stop="3565"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.998" e_score="0.995"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.580" e_score="1.000"/>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="650" e_stop="836" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.998">
            <gDNA_intron_boundary i_start="837" i_stop="1713" i_length="877"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1714" e_stop="2102" e_length="389"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="2103" i_stop="2293" i_length="191"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2294" e_stop="2535" e_length="242"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.580">
            <gDNA_intron_boundary i_start="2536" i_stop="2776" i_length="241"/>
          </intron>
          <exon e_serial="4" e_score="0.960">
            <gDNA_exon_boundary e_start="2777" e_stop="3565" e_length="789"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="650" stop="836"/>
              <exon start="1714" stop="2102"/>
              <exon start="2294" stop="2424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="651" stop="836"/>
              <exon start="1714" stop="2078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="727" stop="836"/>
              <exon start="1714" stop="2102"/>
              <exon start="2294" stop="2422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="802" stop="836"/>
              <exon start="1714" stop="2102"/>
              <exon start="2294" stop="2305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1715" stop="2102"/>
              <exon start="2294" stop="2535"/>
              <exon start="2777" stop="2878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1715" stop="2102"/>
              <exon start="2294" stop="2511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1821" stop="2102"/>
              <exon start="2294" stop="2384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1860" stop="2102"/>
              <exon start="2294" stop="2535"/>
              <exon start="2777" stop="3127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1861" stop="2102"/>
              <exon start="2294" stop="2535"/>
              <exon start="2777" stop="3192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2808" stop="3303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2859" stop="3565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3223" stop="3554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744544" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCATTAAATATCTGGTCTTCTTTTGTTGTTTTGAGCCATTTTAGAGTGTTATTGTTTTCTGTACAGGGAGATAACAGAAAATGAAGAGTTGGACTTTGGGTATTTTTGTTCTTCTTTATCTGGCTTTGTTGTTGAAAATTGAAGGCTTGAAATTTCATAGGTCTGAACATACTGAGAGAATATCAG : GAAGTGCGGGTGATGTCTTGGAAGATAATCCAGTTGGGAGATTAAAAGTTTTTGTCTATGAGCTTCCTAGCAAATATAACAAGAAAATTCTGCAGAAAGACCAGCGATGCCTCAACCACATGTTTGCTGCTGAAATCTTTATGCATCGTTTCCTATTATCTAGCGCTGTTCGAACCTTTAATCCCGAGGAAGCAGATTGGTTCTACACCCCTGTTTACAGTACTTGTGACCTTACACCAAATGGCCTTCCTTTACCCTTCAAGTCACCACGTATGATGAGGAGTGCAATACAACTTATTTCTTCTAACTGGCCTTACTGGAATAGGACAGAGGGAGCTGATCACTTCTTTATTGTGCCACATGATTTTGGTGCTTGTTTTCACTATCAA : GAAGAAAAAGCTATTGAGAGGGGAATTCTTCCATTGCTCCAACGTGCTACCTTGGTTCAAACTTTTGGACAAAGAAATCATGTTTGTTTGAAGGATGGTTCAATTACAATTCCTCCATATGCTCCCCCACAGAAAATGCAGTCCCACTTGATCCCTCCAGATACTCCCCGGTCTATCTTTGTTTATTTCCGAGGCTTGTTTTATGATGTTGGAAATGATCCAGAGGGTGGTTACTATGCTAG : AGGTGCCCGAGCAGCAGTGTGGGAGAACTTTAAAAACAATCCTCTCTTTGATATTTCTACTGAGCATCCAACTACTTACTATGAAGACATGCAGCGAGCCATCTTTTGCTTGTGCCCTCTAGGATGGGCACCATGGAGTCCGAGATTGGTTGAAGCAGTTATATTTGGATGCATCCCTGTTATTATAGCAGATGACATTGTCTTGCCATTTGCTGACGCAATCCCTTGGGAAGATATAGGCGTGTTTGTAGCAGAGAAAGATGTTCCAAATTTGGACACCATTCTCACTTCTATTCGACCAGAAGAAATATTAAGGAAGCAGAGACTGCTTGCCAATCCTTCAATGAAGCAGGCAATGTTGTTTCCAACACCTGCTCAATCAGGTGATGCTTTTCATCAGATTTTGAATGGACTTGCACGGAAACTGCCACATGACAAGACCAATTACTTGAAGCCGGGGGAGAAGTCCTTAAACTGGACTGCTGGTCCAGTTGGTGACCTCAAACCTTGGTAGAGGCTGGCTCTTGGTGATGATTCCACTCTTCTGTTTGGCACCAAAACCTTCTTCTGTGCCAAACTTGCTTAATTCATCTGAGTTGTAAATTTTAACCATGTAGTCCATGTTCATATTTGGATCAGTAGGGCTCTGCATTAGAGATATGGGTATGTTCACTTGCCTATTCGTGTCCTTGTGATATTAGGACATTGTCAAAATTTTATTCAGTTTTTGTGTTGCTTCAACATGCAAGGTTATTTCAGCATCTAAGCATTCTTAGTTACAAGCTTATG</gDNA_template>
            <first_frame> P  I  K  Y  L  V  F  F  C  C  F  E  P  F  *  S  V  I  V  F  C  T  G  R  *  Q  K  M  K  S  W  T  L  G  I  F  V  L  L  Y  L  A  L  L  L  K  I  E  G  L  K  F  H  R  S  E  H  T  E  R  I  S   : G  S  A  G  D  V  L  E  D  N  P  V  G  R  L  K  V  F  V  Y  E  L  P  S  K  Y  N  K  K  I  L  Q  K  D  Q  R  C  L  N  H  M  F  A  A  E  I  F  M  H  R  F  L  L  S  S  A  V  R  T  F  N  P  E  E  A  D  W  F  Y  T  P  V  Y  S  T  C  D  L  T  P  N  G  L  P  L  P  F  K  S  P  R  M  M  R  S  A  I  Q  L  I  S  S  N  W  P  Y  W  N  R  T  E  G  A  D  H  F  F  I  V  P  H  D  F  G  A  C  F  H  Y  Q  :  E  E  K  A  I  E  R  G  I  L  P  L  L  Q  R  A  T  L  V  Q  T  F  G  Q  R  N  H  V  C  L  K  D  G  S  I  T  I  P  P  Y  A  P  P  Q  K  M  Q  S  H  L  I  P  P  D  T  P  R  S  I  F  V  Y  F  R  G  L  F  Y  D  V  G  N  D  P  E  G  G  Y  Y  A  R :   G  A  R  A  A  V  W  E  N  F  K  N  N  P  L  F  D  I  S  T  E  H  P  T  T  Y  Y  E  D  M  Q  R  A  I  F  C  L  C  P  L  G  W  A  P  W  S  P  R  L  V  E  A  V  I  F  G  C  I  P  V  I  I  A  D  D  I  V  L  P  F  A  D  A  I  P  W  E  D  I  G  V  F  V  A  E  K  D  V  P  N  L  D  T  I  L  T  S  I  R  P  E  E  I  L  R  K  Q  R  L  L  A  N  P  S  M  K  Q  A  M  L  F  P  T  P  A  Q  S  G  D  A  F  H  Q  I  L  N  G  L  A  R  K  L  P  H  D  K  T  N  Y  L  K  P  G  E  K  S  L  N  W  T  A  G  P  V  G  D  L  K  P  W  *  R  L  A  L  G  D  D  S  T  L  L  F  G  T  K  T  F  F  C  A  K  L  A  *  F  I  *  V  V  N  F  N  H  V  V  H  V  H  I  W  I  S  R  A  L  H  *  R  Y  G  Y  V  H  L  P  I  R  V  L  V  I  L  G  H  C  Q  N  F  I  Q  F  L  C  C  F  N  M  Q  G  Y  F  S  I  *  A  F  L  V  T  S  L   </first_frame>
            <second_frame>  P  L  N  I  W  S  S  F  V  V  L  S  H  F  R  V  L  L  F  S  V  Q  G  D  N  R  K  *  R  V  G  L  W  V  F  L  F  F  F  I  W  L  C  C  *  K  L  K  A  *  N  F  I  G  L  N  I  L  R  E  Y  Q  :  E  V  R  V  M  S  W  K  I  I  Q  L  G  D  *  K  F  L  S  M  S  F  L  A  N  I  T  R  K  F  C  R  K  T  S  D  A  S  T  T  C  L  L  L  K  S  L  C  I  V  S  Y  Y  L  A  L  F  E  P  L  I  P  R  K  Q  I  G  S  T  P  L  F  T  V  L  V  T  L  H  Q  M  A  F  L  Y  P  S  S  H  H  V  *  *  G  V  Q  Y  N  L  F  L  L  T  G  L  T  G  I  G  Q  R  E  L  I  T  S  L  L  C  H  M  I  L  V  L  V  F  T  I  K :   K  K  K  L  L  R  G  E  F  F  H  C  S  N  V  L  P  W  F  K  L  L  D  K  E  I  M  F  V  *  R  M  V  Q  L  Q  F  L  H  M  L  P  H  R  K  C  S  P  T  *  S  L  Q  I  L  P  G  L  S  L  F  I  S  E  A  C  F  M  M  L  E  M  I  Q  R  V  V  T  M  L   : E  V  P  E  Q  Q  C  G  R  T  L  K  T  I  L  S  L  I  F  L  L  S  I  Q  L  L  T  M  K  T  C  S  E  P  S  F  A  C  A  L  *  D  G  H  H  G  V  R  D  W  L  K  Q  L  Y  L  D  A  S  L  L  L  *  Q  M  T  L  S  C  H  L  L  T  Q  S  L  G  K  I  *  A  C  L  *  Q  R  K  M  F  Q  I  W  T  P  F  S  L  L  F  D  Q  K  K  Y  *  G  S  R  D  C  L  P  I  L  Q  *  S  R  Q  C  C  F  Q  H  L  L  N  Q  V  M  L  F  I  R  F  *  M  D  L  H  G  N  C  H  M  T  R  P  I  T  *  S  R  G  R  S  P  *  T  G  L  L  V  Q  L  V  T  S  N  L  G  R  G  W  L  L  V  M  I  P  L  F  C  L  A  P  K  P  S  S  V  P  N  L  L  N  S  S  E  L  *  I  L  T  M  *  S  M  F  I  F  G  S  V  G  L  C  I  R  D  M  G  M  F  T  C  L  F  V  S  L  *  Y  *  D  I  V  K  I  L  F  S  F  C  V  A  S  T  C  K  V  I  S  A  S  K  H  S  *  L  Q  A  Y  </second_frame>
            <third_frame>   H  *  I  S  G  L  L  L  L  F  *  A  I  L  E  C  Y  C  F  L  Y  R  E  I  T  E  N  E  E  L  D  F  G  Y  F  C  S  S  L  S  G  F  V  V  E  N  *  R  L  E  I  S  *  V  *  T  Y  *  E  N  I  R :   K  C  G  *  C  L  G  R  *  S  S  W  E  I  K  S  F  C  L  *  A  S  *  Q  I  *  Q  E  N  S  A  E  R  P  A  M  P  Q  P  H  V  C  C  *  N  L  Y  A  S  F  P  I  I  *  R  C  S  N  L  *  S  R  G  S  R  L  V  L  H  P  C  L  Q  Y  L  *  P  Y  T  K  W  P  S  F  T  L  Q  V  T  T  Y  D  E  E  C  N  T  T  Y  F  F  *  L  A  L  L  E  *  D  R  G  S  *  S  L  L  Y  C  A  T  *  F  W  C  L  F  S  L  S   : R  R  K  S  Y  *  E  G  N  S  S  I  A  P  T  C  Y  L  G  S  N  F  W  T  K  K  S  C  L  F  E  G  W  F  N  Y  N  S  S  I  C  S  P  T  E  N  A  V  P  L  D  P  S  R  Y  S  P  V  Y  L  C  L  F  P  R  L  V  L  *  C  W  K  *  S  R  G  W  L  L  C  *  :  R  C  P  S  S  S  V  G  E  L  *  K  Q  S  S  L  *  Y  F  Y  *  A  S  N  Y  L  L  *  R  H  A  A  S  H  L  L  L  V  P  S  R  M  G  T  M  E  S  E  I  G  *  S  S  Y  I  W  M  H  P  C  Y  Y  S  R  *  H  C  L  A  I  C  *  R  N  P  L  G  R  Y  R  R  V  C  S  R  E  R  C  S  K  F  G  H  H  S  H  F  Y  S  T  R  R  N  I  K  E  A  E  T  A  C  Q  S  F  N  E  A  G  N  V  V  S  N  T  C  S  I  R  *  C  F  S  S  D  F  E  W  T  C  T  E  T  A  T  *  Q  D  Q  L  L  E  A  G  G  E  V  L  K  L  D  C  W  S  S  W  *  P  Q  T  L  V  E  A  G  S  W  *  *  F  H  S  S  V  W  H  Q  N  L  L  L  C  Q  T  C  L  I  H  L  S  C  K  F  *  P  C  S  P  C  S  Y  L  D  Q  *  G  S  A  L  E  I  W  V  C  S  L  A  Y  S  C  P  C  D  I  R  T  L  S  K  F  Y  S  V  F  V  L  L  Q  H  A  R  L  F  Q  H  L  S  I  L  S  Y  K  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="725" stop="836"/>
                    <exon start="1714" stop="2102"/>
                    <exon start="2294" stop="2535"/>
                    <exon start="2777" stop="3290"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1254</number_coding_nucleotides>
                  <number_encoded_amino_acids>418</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKMKSWTLGIFVLLYLALLLKIEGLKFHRSEHTERISGSAGDVLEDNPVGRLKVFVYELPSKYNKKILQKDQRCLNHMFAAEIFMHRFLLSSAVRTFNPEEADWFYTPVYSTCDLTPNGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFIVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQRNHVCLKDGSITIPPYAPPQKMQSHLIPPDTPRSIFVYFRGLFYDVGNDPEGGYYARGARAAVWENFKNNPLFDISTEHPTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEDIGVFVAEKDVPNLDTILTSIRPEEILRKQRLLANPSMKQAMLFPTPAQSGDAFHQILNGLARKLPHDKTNYLKPGEKSLNWTAGPVGDLKPW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="7512" PGL_stop="4049"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7512" e_stop="7168"/>
            <exon e_start="7068" e_stop="7019"/>
            <exon e_start="6256" e_stop="6196"/>
            <exon e_start="6103" e_stop="6068"/>
            <exon e_start="5855" e_stop="5805"/>
            <exon e_start="5252" e_stop="5160"/>
            <exon e_start="4870" e_stop="4766"/>
            <exon e_start="4656" e_stop="4561"/>
            <exon e_start="4431" e_stop="4049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.769" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7512" e_stop="7168" e_length="345"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.927">
            <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7068" e_stop="7019" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.987">
            <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6256" e_stop="6196" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6103" e_stop="6068" e_length="36"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.849">
            <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5855" e_stop="5805" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.972" acc_prob="0.769">
            <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5252" e_stop="5160" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.959">
            <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="4870" e_stop="4766" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.921" acc_prob="0.871">
            <gDNA_intron_boundary i_start="4765" i_stop="4657" i_length="109"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="4656" e_stop="4561" e_length="96"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129"/>
          </intron>
          <exon e_serial="9" e_score="0.982">
            <gDNA_exon_boundary e_start="4431" e_stop="4049" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7512" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7511" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7500" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7500" stop="7168"/>
              <exon start="7068" stop="7064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7492" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7472" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7453" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4656" stop="4561"/>
              <exon start="4431" stop="4334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7444" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4656" stop="4569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7443" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4656" stop="4561"/>
              <exon start="4431" stop="4331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7442" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4656" stop="4621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7442" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4656" stop="4621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7442" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7441" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4656" stop="4561"/>
              <exon start="4431" stop="4371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7441" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7441" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7438" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4656" stop="4561"/>
              <exon start="4431" stop="4376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7438" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7437" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7432" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7430" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7417" stop="7168"/>
              <exon start="7068" stop="7021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7356" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7302" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7297" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4656" stop="4561"/>
              <exon start="4431" stop="4363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7214" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4656" stop="4561"/>
              <exon start="4431" stop="4374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393359" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7213" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4656" stop="4561"/>
              <exon start="4431" stop="4289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373466" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7213" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4656" stop="4561"/>
              <exon start="4431" stop="4323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373906" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5247" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4656" stop="4561"/>
              <exon start="4431" stop="4080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373907" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5216" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4656" stop="4561"/>
              <exon start="4431" stop="4325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4599" stop="4561"/>
              <exon start="4431" stop="4049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209278" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCGGACGGCGTGAGGCAACATTTATACAAATTACTCCATTTTCAGTAGTACAGATTTTGCAGAAAGCTGACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG : TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG : ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG : GCATTTTGGCGAACACCACACAAACCCTTTAGACAG : AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG : TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG : GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG : CAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAA : GTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCTTGTTATATAATCCCCCCACCCCAACTGCCCACATCTTGTAAATCATAACTCAATTAGTATTATGTTTAAATTATAGTAAATCATAAGGTGTTTTATATTTCAAAGCTAACTGTTTTCTGATGATAGTTCTGATCTTTCTCTGAGAATGCCTGAGAGAATTTTGCAGAAACGGTAATCACCGCTTGAATTAAGATTGATGTTTGTCATGTATGACTGATATAGTGTTATTGAGAGAATTTG</gDNA_template>
            <first_frame> I  G  R  R  E  A  T  F  I  Q  I  T  P  F  S  V  V  Q  I  L  Q  K  A  D  K  H  K  L  R  *  F  I  G  *  M  I  C  C  *  R  V  H  F  K  Y  *  S  A  G  M  C  T  G  S  D  S  G  L  G  S  D  S  K  S  D  P  D  S  N  G  W  S  R  A  R  G  A  V  L  K  S  L  V  L  V  G  G  A  L  L  L  R  R  L  T  K  S  T  T  R  W  D  H  A  R  I  V  A  E  S  L  N  G  E  K  :  F  S  K  E  Q  A  A  R  D  P  D  N  Y  F  N  F  R :   W  L  S  C  P  A  A  D  M  V  D  G  S  K  V  L  Y  F  E  Q  :  A  F  W  R  T  P  H  K  P  F  R  Q  :  R  F  F  M  V  K  P  C  A  K  E  L  K  C  D  V  E  :  L  S  T  Y  A  I  R  D  A  E  E  Y  K  N  F  C  D  R  P  R  D  Q  R  P  Q  P  E  E  V  I  G  :  D  I  A  E  H  L  T  T  I  H  L  K  R  C  E  R  G  K  R  C  L  Y  E  G  S  T  P  A  D  G  F  P  N  S  W  :  Q  N  G  A  T  Y  C  T  S  E  L  A  V  L  K  N  N  E  I  H  A  W  D  R  G  F  D  D  D  G  N  Q  :  V  W  G  V  K  G  G  P  Y  E  F  K  P  A  P  S  S  S  F  N  D  V  L  N  P  L  S  F  A  S  Q  P  L  G  K  R  I  E  G  S  F  V  L  Q  E  *  F  L  V  I  *  S  P  H  P  N  C  P  H  L  V  N  H  N  S  I  S  I  M  F  K  L  *  *  I  I  R  C  F  I  F  Q  S  *  L  F  S  D  D  S  S  D  L  S  L  R  M  P  E  R  I  L  Q  K  R  *  S  P  L  E  L  R  L  M  F  V  M  Y  D  *  Y  S  V  I  E  R  I   </first_frame>
            <second_frame>  S  D  G  V  R  Q  H  L  Y  K  L  L  H  F  Q  *  Y  R  F  C  R  K  L  T  S  T  S  *  D  D  L  S  V  K  *  S  A  V  E  E  S  T  L  S  I  K  A  P  A  C  V  R  A  R  T  R  V  W  V  R  I  L  S  R  I  P  T  Q  T  G  G  A  E  L  V  E  R  F  S  S  R  W  C  S  S  E  E  P  Y  C  S  G  G  *  L  S  R  L  H  V  G  T  M  L  E  L  S  Q  S  H  L  T  V  K  S :   F  Q  R  S  K  L  L  G  I  L  I  I  I  L  I  S   : D  G  F  P  V  L  L  Q  T  W  *  M  A  L  R  F  Y  I  L  S  R :   H  F  G  E  H  H  T  N  P  L  D  R :   D  F  S  W  S  S  L  V  Q  R  S  *  N  V  M  L  S :   *  A  H  M  L  S  E  M  Q  R  S  T  R  T  F  V  I  A  L  G  I  S  V  H  N  P  K  K  L  L  G :   T  L  L  N  I  *  L  P  F  I  *  S  A  V  S  V  G  N  G  A  C  M  K  V  Q  H  L  Q  M  D  F  L  I  H  G :   R  M  V  R  H  T  V  P  Q  N  L  L  C  *  R  I  M  R  Y  M  P  G  I  E  A  L  M  M  M  A  I  K :   F  G  V  *  K  E  V  L  M  N  S  S  L  L  L  L  Q  V  L  T  M  C  *  I  L  *  V  L  L  H  N  P  W  G  K  E  *  K  A  H  L  S  S  R  N  D  F  L  L  Y  N  P  P  T  P  T  A  H  I  L  *  I  I  T  Q  L  V  L  C  L  N  Y  S  K  S  *  G  V  L  Y  F  K  A  N  C  F  L  M  I  V  L  I  F  L  *  E  C  L  R  E  F  C  R  N  G  N  H  R  L  N  *  D  *  C  L  S  C  M  T  D  I  V  L  L  R  E  F  </second_frame>
            <third_frame>   R  T  A  *  G  N  I  Y  T  N  Y  S  I  F  S  S  T  D  F  A  E  S  *  Q  A  Q  A  K  M  I  Y  R  L  N  D  L  L  L  K  S  P  L  *  V  L  K  R  R  H  V  Y  G  L  G  L  G  F  G  F  G  F  *  V  G  S  R  L  K  R  V  E  P  S  S  W  S  G  S  Q  V  A  G  A  R  R  R  S  L  I  A  P  A  A  N  *  V  D  Y  T  L  G  P  C  S  N  C  R  R  V  T  *  R  *  K   : V  F  K  G  A  S  C  *  G  S  *  *  L  F  *  F  Q  :  M  A  F  L  S  C  C  R  H  G  R  W  L  *  G  F  I  F  *  A   : G  I  L  A  N  T  T  Q  T  L  *  T   : E  I  F  H  G  Q  A  L  C  K  G  V  E  M  *  C  *   : V  K  H  I  C  Y  Q  R  C  R  G  V  Q  E  L  L  *  S  P  *  G  S  A  S  T  T  R  R  S  Y  W   : G  H  C  *  T  F  D  Y  H  S  S  K  A  L  *  A  W  E  T  V  L  V  *  R  F  N  T  C  R  W  I  S  *  F  M   : A  E  W  C  D  I  L  Y  L  R  T  C  C  V  K  E  *  *  D  T  C  L  G  *  R  L  *  *  *  W  Q  S   : S  L  G  C  K  R  R  S  L  *  I  Q  A  C  S  F  F  K  F  *  R  C  A  K  S  F  E  F  C  F  T  T  P  G  E  K  N  R  R  L  I  C  P  P  G  M  I  S  C  Y  I  I  P  P  P  Q  L  P  T  S  C  K  S  *  L  N  *  Y  Y  V  *  I  I  V  N  H  K  V  F  Y  I  S  K  L  T  V  F  *  *  *  F  *  S  F  S  E  N  A  *  E  N  F  A  E  T  V  I  T  A  *  I  K  I  D  V  C  H  V  *  L  I  *  C  Y  *  E  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7374" stop="7168"/>
                    <exon start="7068" stop="7019"/>
                    <exon start="6256" stop="6196"/>
                    <exon start="6103" stop="6068"/>
                    <exon start="5855" stop="5805"/>
                    <exon start="5252" stop="5160"/>
                    <exon start="4870" stop="4766"/>
                    <exon start="4656" stop="4561"/>
                    <exon start="4431" stop="4294"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAGMCTGSDSGLGSDSKSDPDSNGWSRARGAVLKSLVLVGGALLLRRLTKSTTRWDHARIVAESLNGEKFSKEQAARDPDNYFNFRWLSCPAADMVDGSKVLYFEQAFWRTPHKPFRQRFFMVKPCAKELKCDVELSTYAIRDAEEYKNFCDRPRDQRPQPEEVIGDIAEHLTTIHLKRCERGKRCLYEGSTPADGFPNSWQNGATYCTSELAVLKNNEIHAWDRGFDDDGNQVWGVKGGPYEFKPAPSSSFNDVLNPLSFASQPLGKRIEGSFVLQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="7512" e_stop="7168"/>
            <exon e_start="7068" e_stop="7019"/>
            <exon e_start="6256" e_stop="6196"/>
            <exon e_start="6103" e_stop="6068"/>
            <exon e_start="5855" e_stop="5805"/>
            <exon e_start="5252" e_stop="5160"/>
            <exon e_start="4870" e_stop="4766"/>
            <exon e_start="4653" e_stop="4561"/>
            <exon e_start="4431" e_stop="4049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.769" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7512" e_stop="7168" e_length="345"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.927">
            <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7068" e_stop="7019" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.987">
            <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6256" e_stop="6196" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6103" e_stop="6068" e_length="36"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.849">
            <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5855" e_stop="5805" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.972" acc_prob="0.769">
            <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5252" e_stop="5160" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.959">
            <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="4870" e_stop="4766" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.921" acc_prob="0.951">
            <gDNA_intron_boundary i_start="4765" i_stop="4654" i_length="112"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="4653" e_stop="4561" e_length="93"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129"/>
          </intron>
          <exon e_serial="9" e_score="0.983">
            <gDNA_exon_boundary e_start="4431" e_stop="4049" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7512" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7511" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7501" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4653" stop="4561"/>
              <exon start="4431" stop="4164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7500" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7500" stop="7168"/>
              <exon start="7068" stop="7064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7492" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7472" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7453" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4653" stop="4561"/>
              <exon start="4431" stop="4167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7451" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4653" stop="4561"/>
              <exon start="4431" stop="4344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7442" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7441" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7441" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7438" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4653" stop="4571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7438" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7437" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7432" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7430" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7429" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4653" stop="4564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7420" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4653" stop="4561"/>
              <exon start="4431" stop="4214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7417" stop="7168"/>
              <exon start="7068" stop="7021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7356" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7302" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7192" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4653" stop="4561"/>
              <exon start="4431" stop="4179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258583" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7053" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4653" stop="4561"/>
              <exon start="4431" stop="4208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5825" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4653" stop="4561"/>
              <exon start="4431" stop="4070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4853" stop="4766"/>
              <exon start="4653" stop="4561"/>
              <exon start="4431" stop="4164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4599" stop="4561"/>
              <exon start="4431" stop="4049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209278" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCGGACGGCGTGAGGCAACATTTATACAAATTACTCCATTTTCAGTAGTACAGATTTTGCAGAAAGCTGACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG : TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG : ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG : GCATTTTGGCGAACACCACACAAACCCTTTAGACAG : AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG : TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG : GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG : AATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAA : GTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCTTGTTATATAATCCCCCCACCCCAACTGCCCACATCTTGTAAATCATAACTCAATTAGTATTATGTTTAAATTATAGTAAATCATAAGGTGTTTTATATTTCAAAGCTAACTGTTTTCTGATGATAGTTCTGATCTTTCTCTGAGAATGCCTGAGAGAATTTTGCAGAAACGGTAATCACCGCTTGAATTAAGATTGATGTTTGTCATGTATGACTGATATAGTGTTATTGAGAGAATTTG</gDNA_template>
            <first_frame> I  G  R  R  E  A  T  F  I  Q  I  T  P  F  S  V  V  Q  I  L  Q  K  A  D  K  H  K  L  R  *  F  I  G  *  M  I  C  C  *  R  V  H  F  K  Y  *  S  A  G  M  C  T  G  S  D  S  G  L  G  S  D  S  K  S  D  P  D  S  N  G  W  S  R  A  R  G  A  V  L  K  S  L  V  L  V  G  G  A  L  L  L  R  R  L  T  K  S  T  T  R  W  D  H  A  R  I  V  A  E  S  L  N  G  E  K  :  F  S  K  E  Q  A  A  R  D  P  D  N  Y  F  N  F  R :   W  L  S  C  P  A  A  D  M  V  D  G  S  K  V  L  Y  F  E  Q  :  A  F  W  R  T  P  H  K  P  F  R  Q  :  R  F  F  M  V  K  P  C  A  K  E  L  K  C  D  V  E  :  L  S  T  Y  A  I  R  D  A  E  E  Y  K  N  F  C  D  R  P  R  D  Q  R  P  Q  P  E  E  V  I  G  :  D  I  A  E  H  L  T  T  I  H  L  K  R  C  E  R  G  K  R  C  L  Y  E  G  S  T  P  A  D  G  F  P  N  S  W  :  N  G  A  T  Y  C  T  S  E  L  A  V  L  K  N  N  E  I  H  A  W  D  R  G  F  D  D  D  G  N  Q  :  V  W  G  V  K  G  G  P  Y  E  F  K  P  A  P  S  S  S  F  N  D  V  L  N  P  L  S  F  A  S  Q  P  L  G  K  R  I  E  G  S  F  V  L  Q  E  *  F  L  V  I  *  S  P  H  P  N  C  P  H  L  V  N  H  N  S  I  S  I  M  F  K  L  *  *  I  I  R  C  F  I  F  Q  S  *  L  F  S  D  D  S  S  D  L  S  L  R  M  P  E  R  I  L  Q  K  R  *  S  P  L  E  L  R  L  M  F  V  M  Y  D  *  Y  S  V  I  E  R  I   </first_frame>
            <second_frame>  S  D  G  V  R  Q  H  L  Y  K  L  L  H  F  Q  *  Y  R  F  C  R  K  L  T  S  T  S  *  D  D  L  S  V  K  *  S  A  V  E  E  S  T  L  S  I  K  A  P  A  C  V  R  A  R  T  R  V  W  V  R  I  L  S  R  I  P  T  Q  T  G  G  A  E  L  V  E  R  F  S  S  R  W  C  S  S  E  E  P  Y  C  S  G  G  *  L  S  R  L  H  V  G  T  M  L  E  L  S  Q  S  H  L  T  V  K  S :   F  Q  R  S  K  L  L  G  I  L  I  I  I  L  I  S   : D  G  F  P  V  L  L  Q  T  W  *  M  A  L  R  F  Y  I  L  S  R :   H  F  G  E  H  H  T  N  P  L  D  R :   D  F  S  W  S  S  L  V  Q  R  S  *  N  V  M  L  S :   *  A  H  M  L  S  E  M  Q  R  S  T  R  T  F  V  I  A  L  G  I  S  V  H  N  P  K  K  L  L  G :   T  L  L  N  I  *  L  P  F  I  *  S  A  V  S  V  G  N  G  A  C  M  K  V  Q  H  L  Q  M  D  F  L  I  H  G :   M  V  R  H  T  V  P  Q  N  L  L  C  *  R  I  M  R  Y  M  P  G  I  E  A  L  M  M  M  A  I  K :   F  G  V  *  K  E  V  L  M  N  S  S  L  L  L  L  Q  V  L  T  M  C  *  I  L  *  V  L  L  H  N  P  W  G  K  E  *  K  A  H  L  S  S  R  N  D  F  L  L  Y  N  P  P  T  P  T  A  H  I  L  *  I  I  T  Q  L  V  L  C  L  N  Y  S  K  S  *  G  V  L  Y  F  K  A  N  C  F  L  M  I  V  L  I  F  L  *  E  C  L  R  E  F  C  R  N  G  N  H  R  L  N  *  D  *  C  L  S  C  M  T  D  I  V  L  L  R  E  F  </second_frame>
            <third_frame>   R  T  A  *  G  N  I  Y  T  N  Y  S  I  F  S  S  T  D  F  A  E  S  *  Q  A  Q  A  K  M  I  Y  R  L  N  D  L  L  L  K  S  P  L  *  V  L  K  R  R  H  V  Y  G  L  G  L  G  F  G  F  G  F  *  V  G  S  R  L  K  R  V  E  P  S  S  W  S  G  S  Q  V  A  G  A  R  R  R  S  L  I  A  P  A  A  N  *  V  D  Y  T  L  G  P  C  S  N  C  R  R  V  T  *  R  *  K   : V  F  K  G  A  S  C  *  G  S  *  *  L  F  *  F  Q  :  M  A  F  L  S  C  C  R  H  G  R  W  L  *  G  F  I  F  *  A   : G  I  L  A  N  T  T  Q  T  L  *  T   : E  I  F  H  G  Q  A  L  C  K  G  V  E  M  *  C  *   : V  K  H  I  C  Y  Q  R  C  R  G  V  Q  E  L  L  *  S  P  *  G  S  A  S  T  T  R  R  S  Y  W   : G  H  C  *  T  F  D  Y  H  S  S  K  A  L  *  A  W  E  T  V  L  V  *  R  F  N  T  C  R  W  I  S  *  F  M   : E  W  C  D  I  L  Y  L  R  T  C  C  V  K  E  *  *  D  T  C  L  G  *  R  L  *  *  *  W  Q  S   : S  L  G  C  K  R  R  S  L  *  I  Q  A  C  S  F  F  K  F  *  R  C  A  K  S  F  E  F  C  F  T  T  P  G  E  K  N  R  R  L  I  C  P  P  G  M  I  S  C  Y  I  I  P  P  P  Q  L  P  T  S  C  K  S  *  L  N  *  Y  Y  V  *  I  I  V  N  H  K  V  F  Y  I  S  K  L  T  V  F  *  *  *  F  *  S  F  S  E  N  A  *  E  N  F  A  E  T  V  I  T  A  *  I  K  I  D  V  C  H  V  *  L  I  *  C  Y  *  E  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7374" stop="7168"/>
                    <exon start="7068" stop="7019"/>
                    <exon start="6256" stop="6196"/>
                    <exon start="6103" stop="6068"/>
                    <exon start="5855" stop="5805"/>
                    <exon start="5252" stop="5160"/>
                    <exon start="4870" stop="4766"/>
                    <exon start="4653" stop="4561"/>
                    <exon start="4431" stop="4294"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAGMCTGSDSGLGSDSKSDPDSNGWSRARGAVLKSLVLVGGALLLRRLTKSTTRWDHARIVAESLNGEKFSKEQAARDPDNYFNFRWLSCPAADMVDGSKVLYFEQAFWRTPHKPFRQRFFMVKPCAKELKCDVELSTYAIRDAEEYKNFCDRPRDQRPQPEEVIGDIAEHLTTIHLKRCERGKRCLYEGSTPADGFPNSWNGATYCTSELAVLKNNEIHAWDRGFDDDGNQVWGVKGGPYEFKPAPSSSFNDVLNPLSFASQPLGKRIEGSFVLQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="7512" e_stop="7168"/>
            <exon e_start="7068" e_stop="7019"/>
            <exon e_start="6256" e_stop="6196"/>
            <exon e_start="6103" e_stop="6068"/>
            <exon e_start="5855" e_stop="5805"/>
            <exon e_start="5252" e_stop="5160"/>
            <exon e_start="4870" e_stop="4766"/>
            <exon e_start="4656" e_stop="4522"/>
            <exon e_start="4431" e_stop="4348"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.769" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7512" e_stop="7168" e_length="345"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.927">
            <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7068" e_stop="7019" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.987">
            <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6256" e_stop="6196" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6103" e_stop="6068" e_length="36"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.849">
            <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5855" e_stop="5805" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.972" acc_prob="0.769">
            <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5252" e_stop="5160" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.959">
            <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="4870" e_stop="4766" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.921" acc_prob="0.871">
            <gDNA_intron_boundary i_start="4765" i_stop="4657" i_length="109"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="4656" e_stop="4522" e_length="135"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="4521" i_stop="4432" i_length="90"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="4431" e_stop="4348" e_length="84"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7512" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7511" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7500" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7500" stop="7168"/>
              <exon start="7068" stop="7064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7492" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7472" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7444" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4656" stop="4569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7442" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4656" stop="4621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7442" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4656" stop="4621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7442" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7441" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7441" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7438" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7437" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7432" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7430" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7417" stop="7168"/>
              <exon start="7068" stop="7021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7416" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4656" stop="4522"/>
              <exon start="4431" stop="4348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7356" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7302" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725621" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCGGACGGCGTGAGGCAACATTTATACAAATTACTCCATTTTCAGTAGTACAGATTTTGCAGAAAGCTGACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG : TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG : ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG : GCATTTTGGCGAACACCACACAAACCCTTTAGACAG : AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG : TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG : GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG : CAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAAGTTAGTTCCATATGCTACGTACTTGTTTTTTCCTTAAAA : GTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTT</gDNA_template>
            <first_frame> I  G  R  R  E  A  T  F  I  Q  I  T  P  F  S  V  V  Q  I  L  Q  K  A  D  K  H  K  L  R  *  F  I  G  *  M  I  C  C  *  R  V  H  F  K  Y  *  S  A  G  M  C  T  G  S  D  S  G  L  G  S  D  S  K  S  D  P  D  S  N  G  W  S  R  A  R  G  A  V  L  K  S  L  V  L  V  G  G  A  L  L  L  R  R  L  T  K  S  T  T  R  W  D  H  A  R  I  V  A  E  S  L  N  G  E  K  :  F  S  K  E  Q  A  A  R  D  P  D  N  Y  F  N  F  R :   W  L  S  C  P  A  A  D  M  V  D  G  S  K  V  L  Y  F  E  Q  :  A  F  W  R  T  P  H  K  P  F  R  Q  :  R  F  F  M  V  K  P  C  A  K  E  L  K  C  D  V  E  :  L  S  T  Y  A  I  R  D  A  E  E  Y  K  N  F  C  D  R  P  R  D  Q  R  P  Q  P  E  E  V  I  G  :  D  I  A  E  H  L  T  T  I  H  L  K  R  C  E  R  G  K  R  C  L  Y  E  G  S  T  P  A  D  G  F  P  N  S  W  :  Q  N  G  A  T  Y  C  T  S  E  L  A  V  L  K  N  N  E  I  H  A  W  D  R  G  F  D  D  D  G  N  Q  V  S  S  I  C  Y  V  L  V  F  S  L  K  :  V  W  G  V  K  G  G  P  Y  E  F  K  P  A  P  S  S  S  F  N  D  V  L  N  P  L  S  F </first_frame>
            <second_frame>  S  D  G  V  R  Q  H  L  Y  K  L  L  H  F  Q  *  Y  R  F  C  R  K  L  T  S  T  S  *  D  D  L  S  V  K  *  S  A  V  E  E  S  T  L  S  I  K  A  P  A  C  V  R  A  R  T  R  V  W  V  R  I  L  S  R  I  P  T  Q  T  G  G  A  E  L  V  E  R  F  S  S  R  W  C  S  S  E  E  P  Y  C  S  G  G  *  L  S  R  L  H  V  G  T  M  L  E  L  S  Q  S  H  L  T  V  K  S :   F  Q  R  S  K  L  L  G  I  L  I  I  I  L  I  S   : D  G  F  P  V  L  L  Q  T  W  *  M  A  L  R  F  Y  I  L  S  R :   H  F  G  E  H  H  T  N  P  L  D  R :   D  F  S  W  S  S  L  V  Q  R  S  *  N  V  M  L  S :   *  A  H  M  L  S  E  M  Q  R  S  T  R  T  F  V  I  A  L  G  I  S  V  H  N  P  K  K  L  L  G :   T  L  L  N  I  *  L  P  F  I  *  S  A  V  S  V  G  N  G  A  C  M  K  V  Q  H  L  Q  M  D  F  L  I  H  G :   R  M  V  R  H  T  V  P  Q  N  L  L  C  *  R  I  M  R  Y  M  P  G  I  E  A  L  M  M  M  A  I  K  L  V  P  Y  A  T  Y  L  F  F  P  *  K :   F  G  V  *  K  E  V  L  M  N  S  S  L  L  L  L  Q  V  L  T  M  C  *  I  L  *  V   </second_frame>
            <third_frame>   R  T  A  *  G  N  I  Y  T  N  Y  S  I  F  S  S  T  D  F  A  E  S  *  Q  A  Q  A  K  M  I  Y  R  L  N  D  L  L  L  K  S  P  L  *  V  L  K  R  R  H  V  Y  G  L  G  L  G  F  G  F  G  F  *  V  G  S  R  L  K  R  V  E  P  S  S  W  S  G  S  Q  V  A  G  A  R  R  R  S  L  I  A  P  A  A  N  *  V  D  Y  T  L  G  P  C  S  N  C  R  R  V  T  *  R  *  K   : V  F  K  G  A  S  C  *  G  S  *  *  L  F  *  F  Q  :  M  A  F  L  S  C  C  R  H  G  R  W  L  *  G  F  I  F  *  A   : G  I  L  A  N  T  T  Q  T  L  *  T   : E  I  F  H  G  Q  A  L  C  K  G  V  E  M  *  C  *   : V  K  H  I  C  Y  Q  R  C  R  G  V  Q  E  L  L  *  S  P  *  G  S  A  S  T  T  R  R  S  Y  W   : G  H  C  *  T  F  D  Y  H  S  S  K  A  L  *  A  W  E  T  V  L  V  *  R  F  N  T  C  R  W  I  S  *  F  M   : A  E  W  C  D  I  L  Y  L  R  T  C  C  V  K  E  *  *  D  T  C  L  G  *  R  L  *  *  *  W  Q  S  S  *  F  H  M  L  R  T  C  F  F  L  K   : S  L  G  C  K  R  R  S  L  *  I  Q  A  C  S  F  F  K  F  *  R  C  A  K  S  F  E  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7374" stop="7168"/>
                    <exon start="7068" stop="7019"/>
                    <exon start="6256" stop="6196"/>
                    <exon start="6103" stop="6068"/>
                    <exon start="5855" stop="5805"/>
                    <exon start="5252" stop="5160"/>
                    <exon start="4870" stop="4766"/>
                    <exon start="4656" stop="4522"/>
                    <exon start="4431" stop="4348"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAGMCTGSDSGLGSDSKSDPDSNGWSRARGAVLKSLVLVGGALLLRRLTKSTTRWDHARIVAESLNGEKFSKEQAARDPDNYFNFRWLSCPAADMVDGSKVLYFEQAFWRTPHKPFRQRFFMVKPCAKELKCDVELSTYAIRDAEEYKNFCDRPRDQRPQPEEVIGDIAEHLTTIHLKRCERGKRCLYEGSTPADGFPNSWQNGATYCTSELAVLKNNEIHAWDRGFDDDGNQVSSICYVLVFSLKVWGVKGGPYEFKPAPSSSFNDVLNPLSF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="7512" e_stop="7168"/>
            <exon e_start="7068" e_stop="7019"/>
            <exon e_start="6256" e_stop="6196"/>
            <exon e_start="6103" e_stop="6068"/>
            <exon e_start="5855" e_stop="5805"/>
            <exon e_start="5252" e_stop="5160"/>
            <exon e_start="4870" e_stop="4761"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.769" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.959" e_score="0.978"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7512" e_stop="7168" e_length="345"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.927">
            <gDNA_intron_boundary i_start="7167" i_stop="7069" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7068" e_stop="7019" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.987">
            <gDNA_intron_boundary i_start="7018" i_stop="6257" i_length="762"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6256" e_stop="6196" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="6195" i_stop="6104" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6103" e_stop="6068" e_length="36"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.849">
            <gDNA_intron_boundary i_start="6067" i_stop="5856" i_length="212"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5855" e_stop="5805" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.972" acc_prob="0.769">
            <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="5252" e_stop="5160" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.959">
            <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289"/>
          </intron>
          <exon e_serial="7" e_score="0.942">
            <gDNA_exon_boundary e_start="4870" e_stop="4761" e_length="110"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7512" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7511" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7500" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7500" stop="7168"/>
              <exon start="7068" stop="7064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7492" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7472" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7442" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7441" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7441" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7438" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7437" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7432" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7430" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7417" stop="7168"/>
              <exon start="7068" stop="7021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7415" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7356" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7302" stop="7168"/>
              <exon start="7068" stop="7019"/>
              <exon start="6256" stop="6196"/>
              <exon start="6103" stop="6068"/>
              <exon start="5855" stop="5805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725621" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCGGACGGCGTGAGGCAACATTTATACAAATTACTCCATTTTCAGTAGTACAGATTTTGCAGAAAGCTGACAAGCACAAGCTAAGATGATTTATCGGTTAAATGATCTGCTGTTGAAGAGTCCACTTTAAGTATTAAAGCGCCGGCATGTGTACGGGCTCGGACTCGGGTTTGGGTTCGGATTCTAAGTCGGATCCCGACTCAAACGGGTGGAGCCGAGCTCGTGGAGCGGTTCTCAAGTCGCTGGTGCTCGTCGGAGGAGCCTTATTGCTCCGGCGGCTAACTAAGTCGACTACACGTTGGGACCATGCTCGAATTGTCGCAGAGTCACTTAACGGTGAAAAG : TTTTCAAAGGAGCAAGCTGCTAGGGATCCTGATAATTATTTTAATTTCAG : ATGGCTTTCCTGTCCTGCTGCAGACATGGTAGATGGCTCTAAGGTTTTATATTTTGAGCAG : GCATTTTGGCGAACACCACACAAACCCTTTAGACAG : AGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG : TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG : GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGGGTATT</gDNA_template>
            <first_frame> I  G  R  R  E  A  T  F  I  Q  I  T  P  F  S  V  V  Q  I  L  Q  K  A  D  K  H  K  L  R  *  F  I  G  *  M  I  C  C  *  R  V  H  F  K  Y  *  S  A  G  M  C  T  G  S  D  S  G  L  G  S  D  S  K  S  D  P  D  S  N  G  W  S  R  A  R  G  A  V  L  K  S  L  V  L  V  G  G  A  L  L  L  R  R  L  T  K  S  T  T  R  W  D  H  A  R  I  V  A  E  S  L  N  G  E  K  :  F  S  K  E  Q  A  A  R  D  P  D  N  Y  F  N  F  R :   W  L  S  C  P  A  A  D  M  V  D  G  S  K  V  L  Y  F  E  Q  :  A  F  W  R  T  P  H  K  P  F  R  Q  :  R  F  F  M  V  K  P  C  A  K  E  L  K  C  D  V  E  :  L  S  T  Y  A  I  R  D  A  E  E  Y  K  N  F  C  D  R  P  R  D  Q  R  P  Q  P  E  E  V  I  G  :  D  I  A  E  H  L  T  T  I  H  L  K  R  C  E  R  G  K  R  C  L  Y  E  G  S  T  P  A  D  G  F  P  N  S  W  V   </first_frame>
            <second_frame>  S  D  G  V  R  Q  H  L  Y  K  L  L  H  F  Q  *  Y  R  F  C  R  K  L  T  S  T  S  *  D  D  L  S  V  K  *  S  A  V  E  E  S  T  L  S  I  K  A  P  A  C  V  R  A  R  T  R  V  W  V  R  I  L  S  R  I  P  T  Q  T  G  G  A  E  L  V  E  R  F  S  S  R  W  C  S  S  E  E  P  Y  C  S  G  G  *  L  S  R  L  H  V  G  T  M  L  E  L  S  Q  S  H  L  T  V  K  S :   F  Q  R  S  K  L  L  G  I  L  I  I  I  L  I  S   : D  G  F  P  V  L  L  Q  T  W  *  M  A  L  R  F  Y  I  L  S  R :   H  F  G  E  H  H  T  N  P  L  D  R :   D  F  S  W  S  S  L  V  Q  R  S  *  N  V  M  L  S :   *  A  H  M  L  S  E  M  Q  R  S  T  R  T  F  V  I  A  L  G  I  S  V  H  N  P  K  K  L  L  G :   T  L  L  N  I  *  L  P  F  I  *  S  A  V  S  V  G  N  G  A  C  M  K  V  Q  H  L  Q  M  D  F  L  I  H  G  Y  </second_frame>
            <third_frame>   R  T  A  *  G  N  I  Y  T  N  Y  S  I  F  S  S  T  D  F  A  E  S  *  Q  A  Q  A  K  M  I  Y  R  L  N  D  L  L  L  K  S  P  L  *  V  L  K  R  R  H  V  Y  G  L  G  L  G  F  G  F  G  F  *  V  G  S  R  L  K  R  V  E  P  S  S  W  S  G  S  Q  V  A  G  A  R  R  R  S  L  I  A  P  A  A  N  *  V  D  Y  T  L  G  P  C  S  N  C  R  R  V  T  *  R  *  K   : V  F  K  G  A  S  C  *  G  S  *  *  L  F  *  F  Q  :  M  A  F  L  S  C  C  R  H  G  R  W  L  *  G  F  I  F  *  A   : G  I  L  A  N  T  T  Q  T  L  *  T   : E  I  F  H  G  Q  A  L  C  K  G  V  E  M  *  C  *   : V  K  H  I  C  Y  Q  R  C  R  G  V  Q  E  L  L  *  S  P  *  G  S  A  S  T  T  R  R  S  Y  W   : G  H  C  *  T  F  D  Y  H  S  S  K  A  L  *  A  W  E  T  V  L  V  *  R  F  N  T  C  R  W  I  S  *  F  M  G  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7374" stop="7168"/>
                    <exon start="7068" stop="7019"/>
                    <exon start="6256" stop="6196"/>
                    <exon start="6103" stop="6068"/>
                    <exon start="5855" stop="5805"/>
                    <exon start="5252" stop="5160"/>
                    <exon start="4870" stop="4763"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAGMCTGSDSGLGSDSKSDPDSNGWSRARGAVLKSLVLVGGALLLRRLTKSTTRWDHARIVAESLNGEKFSKEQAARDPDNYFNFRWLSCPAADMVDGSKVLYFEQAFWRTPHKPFRQRFFMVKPCAKELKCDVELSTYAIRDAEEYKNFCDRPRDQRPQPEEVIGDIAEHLTTIHLKRCERGKRCLYEGSTPADGFPNSWV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="5254" e_stop="5160"/>
            <exon e_start="4870" e_stop="4766"/>
            <exon e_start="4656" e_stop="4561"/>
            <exon e_start="4431" e_stop="4049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5254" e_stop="5160" e_length="95"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.959">
            <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4870" e_stop="4766" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.921" acc_prob="0.871">
            <gDNA_intron_boundary i_start="4765" i_stop="4657" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4656" e_stop="4561" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129"/>
          </intron>
          <exon e_serial="4" e_score="0.982">
            <gDNA_exon_boundary e_start="4431" e_stop="4049" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5254" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4656" stop="4561"/>
              <exon start="4431" stop="4080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373467" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5247" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4656" stop="4561"/>
              <exon start="4431" stop="4080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373907" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5216" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4656" stop="4561"/>
              <exon start="4431" stop="4325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4599" stop="4561"/>
              <exon start="4431" stop="4049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209278" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG : GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG : CAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAA : GTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCTTGTTATATAATCCCCCCACCCCAACTGCCCACATCTTGTAAATCATAACTCAATTAGTATTATGTTTAAATTATAGTAAATCATAAGGTGTTTTATATTTCAAAGCTAACTGTTTTCTGATGATAGTTCTGATCTTTCTCTGAGAATGCCTGAGAGAATTTTGCAGAAACGGTAATCACCGCTTGAATTAAGATTGATGTTTGTCATGTATGACTGATATAGTGTTATTGAGAGAATTTG</gDNA_template>
            <first_frame> S  *  A  H  M  L  S  E  M  Q  R  S  T  R  T  F  V  I  A  L  G  I  S  V  H  N  P  K  K  L  L  G :   T  L  L  N  I  *  L  P  F  I  *  S  A  V  S  V  G  N  G  A  C  M  K  V  Q  H  L  Q  M  D  F  L  I  H  G :   R  M  V  R  H  T  V  P  Q  N  L  L  C  *  R  I  M  R  Y  M  P  G  I  E  A  L  M  M  M  A  I  K :   F  G  V  *  K  E  V  L  M  N  S  S  L  L  L  L  Q  V  L  T  M  C  *  I  L  *  V  L  L  H  N  P  W  G  K  E  *  K  A  H  L  S  S  R  N  D  F  L  L  Y  N  P  P  T  P  T  A  H  I  L  *  I  I  T  Q  L  V  L  C  L  N  Y  S  K  S  *  G  V  L  Y  F  K  A  N  C  F  L  M  I  V  L  I  F  L  *  E  C  L  R  E  F  C  R  N  G  N  H  R  L  N  *  D  *  C  L  S  C  M  T  D  I  V  L  L  R  E  F  </first_frame>
            <second_frame>  V  K  H  I  C  Y  Q  R  C  R  G  V  Q  E  L  L  *  S  P  *  G  S  A  S  T  T  R  R  S  Y  W   : G  H  C  *  T  F  D  Y  H  S  S  K  A  L  *  A  W  E  T  V  L  V  *  R  F  N  T  C  R  W  I  S  *  F  M   : A  E  W  C  D  I  L  Y  L  R  T  C  C  V  K  E  *  *  D  T  C  L  G  *  R  L  *  *  *  W  Q  S   : S  L  G  C  K  R  R  S  L  *  I  Q  A  C  S  F  F  K  F  *  R  C  A  K  S  F  E  F  C  F  T  T  P  G  E  K  N  R  R  L  I  C  P  P  G  M  I  S  C  Y  I  I  P  P  P  Q  L  P  T  S  C  K  S  *  L  N  *  Y  Y  V  *  I  I  V  N  H  K  V  F  Y  I  S  K  L  T  V  F  *  *  *  F  *  S  F  S  E  N  A  *  E  N  F  A  E  T  V  I  T  A  *  I  K  I  D  V  C  H  V  *  L  I  *  C  Y  *  E  N  L </second_frame>
            <third_frame>   L  S  T  Y  A  I  R  D  A  E  E  Y  K  N  F  C  D  R  P  R  D  Q  R  P  Q  P  E  E  V  I  G  :  D  I  A  E  H  L  T  T  I  H  L  K  R  C  E  R  G  K  R  C  L  Y  E  G  S  T  P  A  D  G  F  P  N  S  W  :  Q  N  G  A  T  Y  C  T  S  E  L  A  V  L  K  N  N  E  I  H  A  W  D  R  G  F  D  D  D  G  N  Q  :  V  W  G  V  K  G  G  P  Y  E  F  K  P  A  P  S  S  S  F  N  D  V  L  N  P  L  S  F  A  S  Q  P  L  G  K  R  I  E  G  S  F  V  L  Q  E  *  F  L  V  I  *  S  P  H  P  N  C  P  H  L  V  N  H  N  S  I  S  I  M  F  K  L  *  *  I  I  R  C  F  I  F  Q  S  *  L  F  S  D  D  S  S  D  L  S  L  R  M  P  E  R  I  L  Q  K  R  *  S  P  L  E  L  R  L  M  F  V  M  Y  D  *  Y  S  V  I  E  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5252" stop="5160"/>
                    <exon start="4870" stop="4766"/>
                    <exon start="4656" stop="4561"/>
                    <exon start="4431" stop="4294"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSTYAIRDAEEYKNFCDRPRDQRPQPEEVIGDIAEHLTTIHLKRCERGKRCLYEGSTPADGFPNSWQNGATYCTSELAVLKNNEIHAWDRGFDDDGNQVWGVKGGPYEFKPAPSSSFNDVLNPLSFASQPLGKRIEGSFVLQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="5857" e_stop="5805"/>
            <exon e_start="5252" e_stop="5160"/>
            <exon e_start="4870" e_stop="4766"/>
            <exon e_start="4656" e_stop="4561"/>
            <exon e_start="4431" e_stop="4049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.769" e_score="0.849"/>
          <exon-intron don_prob="0.999" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.849">
            <gDNA_exon_boundary e_start="5857" e_stop="5805" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.769">
            <gDNA_intron_boundary i_start="5804" i_stop="5253" i_length="552"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5252" e_stop="5160" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.959">
            <gDNA_intron_boundary i_start="5159" i_stop="4871" i_length="289"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4870" e_stop="4766" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.921" acc_prob="0.871">
            <gDNA_intron_boundary i_start="4765" i_stop="4657" i_length="109"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4656" e_stop="4561" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="4560" i_stop="4432" i_length="129"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4431" e_stop="4049" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5857" stop="5805"/>
              <exon start="5252" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4656" stop="4561"/>
              <exon start="4431" stop="4050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213566" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5247" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4656" stop="4561"/>
              <exon start="4431" stop="4080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373907" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5216" stop="5160"/>
              <exon start="4870" stop="4766"/>
              <exon start="4656" stop="4561"/>
              <exon start="4431" stop="4325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4599" stop="4561"/>
              <exon start="4431" stop="4049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209278" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGATTTTTCATGGTCAAGCCTTGTGCAAAGGAGTTGAAATGTGATGTTGAG : TTAAGCACATATGCTATCAGAGATGCAGAGGAGTACAAGAACTTTTGTGATCGCCCTAGGGATCAGCGTCCACAACCCGAAGAAGTTATTGGG : GACATTGCTGAACATTTGACTACCATTCATCTAAAGCGCTGTGAGCGTGGGAAACGGTGCTTGTATGAAGGTTCAACACCTGCAGATGGATTTCCTAATTCATGG : CAGAATGGTGCGACATACTGTACCTCAGAACTTGCTGTGTTAAAGAATAATGAGATACATGCCTGGGATAGAGGCTTTGATGATGATGGCAATCAA : GTTTGGGGTGTAAAAGGAGGTCCTTATGAATTCAAGCCTGCTCCTTCTTCAAGTTTTAACGATGTGCTAAATCCTTTGAGTTTTGCTTCACAACCCCTGGGGAAAAGAATAGAAGGCTCATTTGTCCTCCAGGAATGATTTCTTGTTATATAATCCCCCCACCCCAACTGCCCACATCTTGTAAATCATAACTCAATTAGTATTATGTTTAAATTATAGTAAATCATAAGGTGTTTTATATTTCAAAGCTAACTGTTTTCTGATGATAGTTCTGATCTTTCTCTGAGAATGCCTGAGAGAATTTTGCAGAAACGGTAATCACCGCTTGAATTAAGATTGATGTTTGTCATGTATGACTGATATAGTGTTATTGAGAGAATTTG</gDNA_template>
            <first_frame> R  D  F  S  W  S  S  L  V  Q  R  S  *  N  V  M  L  S :   *  A  H  M  L  S  E  M  Q  R  S  T  R  T  F  V  I  A  L  G  I  S  V  H  N  P  K  K  L  L  G :   T  L  L  N  I  *  L  P  F  I  *  S  A  V  S  V  G  N  G  A  C  M  K  V  Q  H  L  Q  M  D  F  L  I  H  G :   R  M  V  R  H  T  V  P  Q  N  L  L  C  *  R  I  M  R  Y  M  P  G  I  E  A  L  M  M  M  A  I  K :   F  G  V  *  K  E  V  L  M  N  S  S  L  L  L  L  Q  V  L  T  M  C  *  I  L  *  V  L  L  H  N  P  W  G  K  E  *  K  A  H  L  S  S  R  N  D  F  L  L  Y  N  P  P  T  P  T  A  H  I  L  *  I  I  T  Q  L  V  L  C  L  N  Y  S  K  S  *  G  V  L  Y  F  K  A  N  C  F  L  M  I  V  L  I  F  L  *  E  C  L  R  E  F  C  R  N  G  N  H  R  L  N  *  D  *  C  L  S  C  M  T  D  I  V  L  L  R  E  F  </first_frame>
            <second_frame>  E  I  F  H  G  Q  A  L  C  K  G  V  E  M  *  C  *   : V  K  H  I  C  Y  Q  R  C  R  G  V  Q  E  L  L  *  S  P  *  G  S  A  S  T  T  R  R  S  Y  W   : G  H  C  *  T  F  D  Y  H  S  S  K  A  L  *  A  W  E  T  V  L  V  *  R  F  N  T  C  R  W  I  S  *  F  M   : A  E  W  C  D  I  L  Y  L  R  T  C  C  V  K  E  *  *  D  T  C  L  G  *  R  L  *  *  *  W  Q  S   : S  L  G  C  K  R  R  S  L  *  I  Q  A  C  S  F  F  K  F  *  R  C  A  K  S  F  E  F  C  F  T  T  P  G  E  K  N  R  R  L  I  C  P  P  G  M  I  S  C  Y  I  I  P  P  P  Q  L  P  T  S  C  K  S  *  L  N  *  Y  Y  V  *  I  I  V  N  H  K  V  F  Y  I  S  K  L  T  V  F  *  *  *  F  *  S  F  S  E  N  A  *  E  N  F  A  E  T  V  I  T  A  *  I  K  I  D  V  C  H  V  *  L  I  *  C  Y  *  E  N  L </second_frame>
            <third_frame>   R  F  F  M  V  K  P  C  A  K  E  L  K  C  D  V  E  :  L  S  T  Y  A  I  R  D  A  E  E  Y  K  N  F  C  D  R  P  R  D  Q  R  P  Q  P  E  E  V  I  G  :  D  I  A  E  H  L  T  T  I  H  L  K  R  C  E  R  G  K  R  C  L  Y  E  G  S  T  P  A  D  G  F  P  N  S  W  :  Q  N  G  A  T  Y  C  T  S  E  L  A  V  L  K  N  N  E  I  H  A  W  D  R  G  F  D  D  D  G  N  Q  :  V  W  G  V  K  G  G  P  Y  E  F  K  P  A  P  S  S  S  F  N  D  V  L  N  P  L  S  F  A  S  Q  P  L  G  K  R  I  E  G  S  F  V  L  Q  E  *  F  L  V  I  *  S  P  H  P  N  C  P  H  L  V  N  H  N  S  I  S  I  M  F  K  L  *  *  I  I  R  C  F  I  F  Q  S  *  L  F  S  D  D  S  S  D  L  S  L  R  M  P  E  R  I  L  Q  K  R  *  S  P  L  E  L  R  L  M  F  V  M  Y  D  *  Y  S  V  I  E  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5855" stop="5805"/>
                    <exon start="5252" stop="5160"/>
                    <exon start="4870" stop="4766"/>
                    <exon start="4656" stop="4561"/>
                    <exon start="4431" stop="4294"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFFMVKPCAKELKCDVELSTYAIRDAEEYKNFCDRPRDQRPQPEEVIGDIAEHLTTIHLKRCERGKRCLYEGSTPADGFPNSWQNGATYCTSELAVLKNNEIHAWDRGFDDDGNQVWGVKGGPYEFKPAPSSSFNDVLNPLSFASQPLGKRIEGSFVLQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="10395" PGL_stop="9330"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10395" e_stop="10074"/>
            <exon e_start="9723" e_stop="9401"/>
            <exon e_start="9336" e_stop="9330"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.891" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.970" e_score="0.985"/>
          <exon-only e_score="0.857"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10395" e_stop="10074" e_length="322"/>
          </exon>
          <intron i_serial="1" don_prob="0.891" acc_prob="0.994">
            <gDNA_intron_boundary i_start="10073" i_stop="9724" i_length="350"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="9723" e_stop="9401" e_length="323"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="9400" i_stop="9337" i_length="64"/>
          </intron>
          <exon e_serial="3" e_score="0.857">
            <gDNA_exon_boundary e_start="9336" e_stop="9330" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10395" stop="10074"/>
              <exon start="9723" stop="9401"/>
              <exon start="9336" stop="9330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10387" stop="10074"/>
              <exon start="9723" stop="9487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293672" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTCTCAGGAAAGTGGATCTCTGGTACGATTGGCCTAACAAAAGGTACTTGCACATAAACCAATACCAATTGGGGAAAAAATTGTACGACGTTGAATGGCAGAACGGCACTTCATTTTACTTCACTTTGGATTCTACCCAGGAATGCACGGTCAAGCATTTCCCTGTGGGGATTTTGAGACCTAATTGGCTTGAAGGTGCGAATTATTTGGGCCAGAGGTATAAGGATGGATTTCTCTGTAATGTTTGGGAGAAGATTGATTTCCTACACTATTATGAAGATGTTGCTACCCAGATACCTGTTTATTGGCAGTTTTATGATG : GATTGATCGAACATATTATAACTTTTGAGGTGGGGAAAGTGCTGGAGGATTCTAAGTGGCAAGCCCCCGCTTACTGCTTCAAGGAGATGGAGAAAGGAAAGTTAACATTGCAAGATCGAAAAGTTGAAGACCACTCTCTTCTCGCTTTGTTTCATGACAGAAGATTTAAAAGTGACAAATGAACATAGATGTATGACAAAAATATACCTAGTGCCACTTGAATATGCCCATGTTTTGAGTTTGTAGTGCTAAATAGTTTGGGACAAATACACACACATTCCTTTGAACTTGCACTTTTATATGGCATGACATTTTAGTGACTG : AACAAAA</gDNA_template>
            <first_frame> G  L  R  K  V  D  L  W  Y  D  W  P  N  K  R  Y  L  H  I  N  Q  Y  Q  L  G  K  K  L  Y  D  V  E  W  Q  N  G  T  S  F  Y  F  T  L  D  S  T  Q  E  C  T  V  K  H  F  P  V  G  I  L  R  P  N  W  L  E  G  A  N  Y  L  G  Q  R  Y  K  D  G  F  L  C  N  V  W  E  K  I  D  F  L  H  Y  Y  E  D  V  A  T  Q  I  P  V  Y  W  Q  F  Y  D   : G  L  I  E  H  I  I  T  F  E  V  G  K  V  L  E  D  S  K  W  Q  A  P  A  Y  C  F  K  E  M  E  K  G  K  L  T  L  Q  D  R  K  V  E  D  H  S  L  L  A  L  F  H  D  R  R  F  K  S  D  K  *  T  *  M  Y  D  K  N  I  P  S  A  T  *  I  C  P  C  F  E  F  V  V  L  N  S  L  G  Q  I  H  T  H  S  F  E  L  A  L  L  Y  G  M  T  F  *  *  L  :  N  K  </first_frame>
            <second_frame>  V  S  G  K  W  I  S  G  T  I  G  L  T  K  G  T  C  T  *  T  N  T  N  W  G  K  N  C  T  T  L  N  G  R  T  A  L  H  F  T  S  L  W  I  L  P  R  N  A  R  S  S  I  S  L  W  G  F  *  D  L  I  G  L  K  V  R  I  I  W  A  R  G  I  R  M  D  F  S  V  M  F  G  R  R  L  I  S  Y  T  I  M  K  M  L  L  P  R  Y  L  F  I  G  S  F  M  M  :  D  *  S  N  I  L  *  L  L  R  W  G  K  C  W  R  I  L  S  G  K  P  P  L  T  A  S  R  R  W  R  K  E  S  *  H  C  K  I  E  K  L  K  T  T  L  F  S  L  C  F  M  T  E  D  L  K  V  T  N  E  H  R  C  M  T  K  I  Y  L  V  P  L  E  Y  A  H  V  L  S  L  *  C  *  I  V  W  D  K  Y  T  H  I  P  L  N  L  H  F  Y  M  A  *  H  F  S  D  * :   T  K </second_frame>
            <third_frame>   S  Q  E  S  G  S  L  V  R  L  A  *  Q  K  V  L  A  H  K  P  I  P  I  G  E  K  I  V  R  R  *  M  A  E  R  H  F  I  L  L  H  F  G  F  Y  P  G  M  H  G  Q  A  F  P  C  G  D  F  E  T  *  L  A  *  R  C  E  L  F  G  P  E  V  *  G  W  I  S  L  *  C  L  G  E  D  *  F  P  T  L  L  *  R  C  C  Y  P  D  T  C  L  L  A  V  L  *  W :   I  D  R  T  Y  Y  N  F  *  G  G  E  S  A  G  G  F  *  V  A  S  P  R  L  L  L  Q  G  D  G  E  R  K  V  N  I  A  R  S  K  S  *  R  P  L  S  S  R  F  V  S  *  Q  K  I  *  K  *  Q  M  N  I  D  V  *  Q  K  Y  T  *  C  H  L  N  M  P  M  F  *  V  C  S  A  K  *  F  G  T  N  T  H  T  F  L  *  T  C  T  F  I  W  H  D  I  L  V  T   : E  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10395" stop="10074"/>
                    <exon start="9723" stop="9542"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLRKVDLWYDWPNKRYLHINQYQLGKKLYDVEWQNGTSFYFTLDSTQECTVKHFPVGILRPNWLEGANYLGQRYKDGFLCNVWEKIDFLHYYEDVATQIPVYWQFYDGLIEHIITFEVGKVLEDSKWQAPAYCFKEMEKGKLTLQDRKVEDHSLLALFHDRRFKSDK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="14243" PGL_stop="10961"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14243" e_stop="14015"/>
            <exon e_start="13041" e_stop="12783"/>
            <exon e_start="12211" e_stop="12017"/>
            <exon e_start="11764" e_stop="10961"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.865"/>
          <exon-intron don_prob="0.989" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.865" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.865">
            <gDNA_exon_boundary e_start="14243" e_stop="14015" e_length="229"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="14014" i_stop="13042" i_length="973"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13041" e_stop="12783" e_length="259"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12782" i_stop="12212" i_length="571"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12211" e_stop="12017" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.865">
            <gDNA_intron_boundary i_start="12016" i_stop="11765" i_length="252"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="11764" e_stop="10961" e_length="804"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14243" stop="14015"/>
              <exon start="13041" stop="12783"/>
              <exon start="12211" stop="12040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14208" stop="14015"/>
              <exon start="13041" stop="12783"/>
              <exon start="12211" stop="12017"/>
              <exon start="11764" stop="11743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14208" stop="14015"/>
              <exon start="13041" stop="12783"/>
              <exon start="12211" stop="12034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14192" stop="14015"/>
              <exon start="13041" stop="12783"/>
              <exon start="12211" stop="12017"/>
              <exon start="11764" stop="11013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14172" stop="14015"/>
              <exon start="13041" stop="12783"/>
              <exon start="12211" stop="12017"/>
              <exon start="11764" stop="11638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14150" stop="14015"/>
              <exon start="13041" stop="12783"/>
              <exon start="12211" stop="12099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14150" stop="14015"/>
              <exon start="13041" stop="12783"/>
              <exon start="12211" stop="12157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12033" stop="12017"/>
              <exon start="11764" stop="11618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11588" stop="11152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11570" stop="10961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11567" stop="11243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284639" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAATTTAACTTGTTCATATGAATACGAGGGTTTGCTTGCTCTAAAACTCTGAAACCAAAACAAAATCTGGAAATGAGTAGTGAAACAAGGTGAAGAAGAATAGCTCGAGCTTAAAACCCTACTAGTCGAAGAATTAATGGGTAAAAAGGAGAGGGCGCAAGAGAGAAGAGAGCAGAGACGCCAAGAGATCTCTCTTCTCCGTACTATTCCTTATTCTGATCAACAAAG : ATGGTGGTCAAATGAAACTATCGCTGTCGTGACTGGTTCAAACAGAGGAATTGGTTTTGAAATTGCTCACCAACTGGCCTCACATGGCTTAACAGTAGTTCTTACATCACGAGAGACTCGTGTTGGTGAAGAAGCAACGAAAATCATGCAAGAAAAAGGTTTGAATGTGGTATTTCATCAATTGGATATTGTAGACCCTGTATCAGTTGAAACATTTTCTGACTGGATAAAGGAAAACTATGGTGGCTTAGATATACTG : ATCAATAATGCAGGAGTCAATTTCAATTTCGGCACAGATAATTCAGTGGAATATGCAGAAACTGTTATTCAGACCAACTACTTTGGCACCAAAAGTATGACTAAAGCTATGATTCCATTAATGAGGCCGTCTCCTTTTGGCGCTCGAATTGTTAATGTGACCTCACGACTGGGGAGACTTAACGGCAGAAGGAAT : AGAATTGCAAATGTCAGCTTGAGACAACAACTGGAGGATGTGGATTCTCTATCAGAGGAACTGATTGATAGTACTGTGAACTCATTTTTGGAACAAGTAAAAAATGGAACTTGGGAATCTGGGGGATGGCCACAAGTATTCACAGACTACTCATTGTCGAAGCTTGCTGCTAATGCTTACACCAGGCTAATGGCAAGAATACTTTCTGACCAGCCAGAGGGCCATAAGATATATATGAATTGCTATTGCCCAGGTTGGGTGAAGACTGCCATGACTGATTGGGCTGGGCATACATCTCCTGAAGTAGCTGCTGATACTGCAGTCTGGCTTGCTCTTACCTCAGATCAGATTGTGAGTGGTAAGTTTTTTGCTGAGAGGCGTGAAATAAACTTCTAAAGTGGGAATTGAAGACAAATTCAGGAATCAGCCCAGTTTCTTTTGCTTTTGAACGAAAATGTGATACGAGTACTTATAAAAACTAGAGTACTCATGTTACAAGATGCTAGCAAGAGCCTACTGAAAATTGATATTGTTAATGGGAAACAATATGTATTGGTACAAGTTGTTACCTAGTCGTCAAACTCTAGAGGATGTGTTAACTTTGGGGAGAGCTGAAGCCTGAAAGGGTGGTCTGGTTTTCTAATAATCACATCGACACATCCTAGATAAGATCATTTGCCTGTACCATTTGTAACTTTTAGTACAGATTAGCAATACATACTACAGCATATTGGATAGCTAACTACTTAAAATATGTCTTCTTTAATTATAAGCATTAGCTGTTTTAAAAGATCACTTAATCGA</gDNA_template>
            <first_frame> T  I  *  L  V  H  M  N  T  R  V  C  L  L  *  N  S  E  T  K  T  K  S  G  N  E  *  *  N  K  V  K  K  N  S  S  S  L  K  P  Y  *  S  K  N  *  W  V  K  R  R  G  R  K  R  E  E  S  R  D  A  K  R  S  L  F  S  V  L  F  L  I  L  I  N  K   : D  G  G  Q  M  K  L  S  L  S  *  L  V  Q  T  E  E  L  V  L  K  L  L  T  N  W  P  H  M  A  *  Q  *  F  L  H  H  E  R  L  V  L  V  K  K  Q  R  K  S  C  K  K  K  V  *  M  W  Y  F  I  N  W  I  L  *  T  L  Y  Q  L  K  H  F  L  T  G  *  R  K  T  M  V  A  *  I  Y  * :   S  I  M  Q  E  S  I  S  I  S  A  Q  I  I  Q  W  N  M  Q  K  L  L  F  R  P  T  T  L  A  P  K  V  *  L  K  L  *  F  H  *  *  G  R  L  L  L  A  L  E  L  L  M  *  P  H  D  W  G  D  L  T  A  E  G  I :   E  L  Q  M  S  A  *  D  N  N  W  R  M  W  I  L  Y  Q  R  N  *  L  I  V  L  *  T  H  F  W  N  K  *  K  M  E  L  G  N  L  G  D  G  H  K  Y  S  Q  T  T  H  C  R  S  L  L  L  M  L  T  P  G  *  W  Q  E  Y  F  L  T  S  Q  R  A  I  R  Y  I  *  I  A  I  A  Q  V  G  *  R  L  P  *  L  I  G  L  G  I  H  L  L  K  *  L  L  I  L  Q  S  G  L  L  L  P  Q  I  R  L  *  V  V  S  F  L  L  R  G  V  K  *  T  S  K  V  G  I  E  D  K  F  R  N  Q  P  S  F  F  C  F  *  T  K  M  *  Y  E  Y  L  *  K  L  E  Y  S  C  Y  K  M  L  A  R  A  Y  *  K  L  I  L  L  M  G  N  N  M  Y  W  Y  K  L  L  P  S  R  Q  T  L  E  D  V  L  T  L  G  R  A  E  A  *  K  G  G  L  V  F  *  *  S  H  R  H  I  L  D  K  I  I  C  L  Y  H  L  *  L  L  V  Q  I  S  N  T  Y  Y  S  I  L  D  S  *  L  L  K  I  C  L  L  *  L  *  A  L  A  V  L  K  D  H  L  I   </first_frame>
            <second_frame>  Q  F  N  L  F  I  *  I  R  G  F  A  C  S  K  T  L  K  P  K  Q  N  L  E  M  S  S  E  T  R  *  R  R  I  A  R  A  *  N  P  T  S  R  R  I  N  G  *  K  G  E  G  A  R  E  K  R  A  E  T  P  R  D  L  S  S  P  Y  Y  S  L  F  *  S  T  K  :  M  V  V  K  *  N  Y  R  C  R  D  W  F  K  Q  R  N  W  F  *  N  C  S  P  T  G  L  T  W  L  N  S  S  S  Y  I  T  R  D  S  C  W  *  R  S  N  E  N  H  A  R  K  R  F  E  C  G  I  S  S  I  G  Y  C  R  P  C  I  S  *  N  I  F  *  L  D  K  G  K  L  W  W  L  R  Y  T   : D  Q  *  C  R  S  Q  F  Q  F  R  H  R  *  F  S  G  I  C  R  N  C  Y  S  D  Q  L  L  W  H  Q  K  Y  D  *  S  Y  D  S  I  N  E  A  V  S  F  W  R  S  N  C  *  C  D  L  T  T  G  E  T  *  R  Q  K  E   : *  N  C  K  C  Q  L  E  T  T  T  G  G  C  G  F  S  I  R  G  T  D  *  *  Y  C  E  L  I  F  G  T  S  K  K  W  N  L  G  I  W  G  M  A  T  S  I  H  R  L  L  I  V  E  A  C  C  *  C  L  H  Q  A  N  G  K  N  T  F  *  P  A  R  G  P  *  D  I  Y  E  L  L  L  P  R  L  G  E  D  C  H  D  *  L  G  W  A  Y  I  S  *  S  S  C  *  Y  C  S  L  A  C  S  Y  L  R  S  D  C  E  W  *  V  F  C  *  E  A  *  N  K  L  L  K  W  E  L  K  T  N  S  G  I  S  P  V  S  F  A  F  E  R  K  C  D  T  S  T  Y  K  N  *  S  T  H  V  T  R  C  *  Q  E  P  T  E  N  *  Y  C  *  W  E  T  I  C  I  G  T  S  C  Y  L  V  V  K  L  *  R  M  C  *  L  W  G  E  L  K  P  E  R  V  V  W  F  S  N  N  H  I  D  T  S  *  I  R  S  F  A  C  T  I  C  N  F  *  Y  R  L  A  I  H  T  T  A  Y  W  I  A  N  Y  L  K  Y  V  F  F  N  Y  K  H  *  L  F  *  K  I  T  *  S  </second_frame>
            <third_frame>   N  L  T  C  S  Y  E  Y  E  G  L  L  A  L  K  L  *  N  Q  N  K  I  W  K  *  V  V  K  Q  G  E  E  E  *  L  E  L  K  T  L  L  V  E  E  L  M  G  K  K  E  R  A  Q  E  R  R  E  Q  R  R  Q  E  I  S  L  L  R  T  I  P  Y  S  D  Q  Q  R :   W  W  S  N  E  T  I  A  V  V  T  G  S  N  R  G  I  G  F  E  I  A  H  Q  L  A  S  H  G  L  T  V  V  L  T  S  R  E  T  R  V  G  E  E  A  T  K  I  M  Q  E  K  G  L  N  V  V  F  H  Q  L  D  I  V  D  P  V  S  V  E  T  F  S  D  W  I  K  E  N  Y  G  G  L  D  I  L  :  I  N  N  A  G  V  N  F  N  F  G  T  D  N  S  V  E  Y  A  E  T  V  I  Q  T  N  Y  F  G  T  K  S  M  T  K  A  M  I  P  L  M  R  P  S  P  F  G  A  R  I  V  N  V  T  S  R  L  G  R  L  N  G  R  R  N  :  R  I  A  N  V  S  L  R  Q  Q  L  E  D  V  D  S  L  S  E  E  L  I  D  S  T  V  N  S  F  L  E  Q  V  K  N  G  T  W  E  S  G  G  W  P  Q  V  F  T  D  Y  S  L  S  K  L  A  A  N  A  Y  T  R  L  M  A  R  I  L  S  D  Q  P  E  G  H  K  I  Y  M  N  C  Y  C  P  G  W  V  K  T  A  M  T  D  W  A  G  H  T  S  P  E  V  A  A  D  T  A  V  W  L  A  L  T  S  D  Q  I  V  S  G  K  F  F  A  E  R  R  E  I  N  F  *  S  G  N  *  R  Q  I  Q  E  S  A  Q  F  L  L  L  L  N  E  N  V  I  R  V  L  I  K  T  R  V  L  M  L  Q  D  A  S  K  S  L  L  K  I  D  I  V  N  G  K  Q  Y  V  L  V  Q  V  V  T  *  S  S  N  S  R  G  C  V  N  F  G  E  S  *  S  L  K  G  W  S  G  F  L  I  I  T  S  T  H  P  R  *  D  H  L  P  V  P  F  V  T  F  S  T  D  *  Q  Y  I  L  Q  H  I  G  *  L  T  T  *  N  M  S  S  L  I  I  S  I  S  C  F  K  R  S  L  N  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14139" stop="14015"/>
                    <exon start="13041" stop="12783"/>
                    <exon start="12211" stop="12017"/>
                    <exon start="11764" stop="11369"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>972</number_coding_nucleotides>
                  <number_encoded_amino_acids>324</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LELKTLLVEELMGKKERAQERREQRRQEISLLRTIPYSDQQRWWSNETIAVVTGSNRGIGFEIAHQLASHGLTVVLTSRETRVGEEATKIMQEKGLNVVFHQLDIVDPVSVETFSDWIKENYGGLDILINNAGVNFNFGTDNSVEYAETVIQTNYFGTKSMTKAMIPLMRPSPFGARIVNVTSRLGRLNGRRNRIANVSLRQQLEDVDSLSEELIDSTVNSFLEQVKNGTWESGGWPQVFTDYSLSKLAANAYTRLMARILSDQPEGHKIYMNCYCPGWVKTAMTDWAGHTSPEVAADTAVWLALTSDQIVSGKFFAERREINF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14143" e_stop="14015"/>
            <exon e_start="13041" e_stop="12637"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14143" e_stop="14015" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="14014" i_stop="13042" i_length="973"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13041" e_stop="12637" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14143" stop="14015"/>
              <exon start="13041" stop="12637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248050" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAGCTCGAGCTTAAAACCCTACTAGTCGAAGAATTAATGGGTAAAAAGGAGAGGGCGCAAGAGAGAAGAGAGCAGAGACGCCAAGAGATCTCTCTTCTCCGTACTATTCCTTATTCTGATCAACAAAG : ATGGTGGTCAAATGAAACTATCGCTGTCGTGACTGGTTCAAACAGAGGAATTGGTTTTGAAATTGCTCACCAACTGGCCTCACATGGCTTAACAGTAGTTCTTACATCACGAGAGACTCGTGTTGGTGAAGAAGCAACGAAAATCATGCAAGAAAAAGGTTTGAATGTGGTATTTCATCAATTGGATATTGTAGACCCTGTATCAGTTGAAACATTTTCTGACTGGATAAAGGAAAACTATGGTGGCTTAGATATACTGGTAATCCATCTACTCTATTTTCTCTATATAATCTAGCATTGGTCCATCTACTCCATGATATCTTTATGATGATGATACAATATGAGCTTAAATGATGAAATGGGGATTCATATAGCCGACCCCAACTTATTTGGGACTGAGACGTG</gDNA_template>
            <first_frame> I  A  R  A  *  N  P  T  S  R  R  I  N  G  *  K  G  E  G  A  R  E  K  R  A  E  T  P  R  D  L  S  S  P  Y  Y  S  L  F  *  S  T  K  :  M  V  V  K  *  N  Y  R  C  R  D  W  F  K  Q  R  N  W  F  *  N  C  S  P  T  G  L  T  W  L  N  S  S  S  Y  I  T  R  D  S  C  W  *  R  S  N  E  N  H  A  R  K  R  F  E  C  G  I  S  S  I  G  Y  C  R  P  C  I  S  *  N  I  F  *  L  D  K  G  K  L  W  W  L  R  Y  T  G  N  P  S  T  L  F  S  L  Y  N  L  A  L  V  H  L  L  H  D  I  F  M  M  M  I  Q  Y  E  L  K  *  *  N  G  D  S  Y  S  R  P  Q  L  I  W  D  *  D  V </first_frame>
            <second_frame>  *  L  E  L  K  T  L  L  V  E  E  L  M  G  K  K  E  R  A  Q  E  R  R  E  Q  R  R  Q  E  I  S  L  L  R  T  I  P  Y  S  D  Q  Q  R :   W  W  S  N  E  T  I  A  V  V  T  G  S  N  R  G  I  G  F  E  I  A  H  Q  L  A  S  H  G  L  T  V  V  L  T  S  R  E  T  R  V  G  E  E  A  T  K  I  M  Q  E  K  G  L  N  V  V  F  H  Q  L  D  I  V  D  P  V  S  V  E  T  F  S  D  W  I  K  E  N  Y  G  G  L  D  I  L  V  I  H  L  L  Y  F  L  Y  I  I  *  H  W  S  I  Y  S  M  I  S  L  *  *  *  Y  N  M  S  L  N  D  E  M  G  I  H  I  A  D  P  N  L  F  G  T  E  T   </second_frame>
            <third_frame>   S  S  S  L  K  P  Y  *  S  K  N  *  W  V  K  R  R  G  R  K  R  E  E  S  R  D  A  K  R  S  L  F  S  V  L  F  L  I  L  I  N  K   : D  G  G  Q  M  K  L  S  L  S  *  L  V  Q  T  E  E  L  V  L  K  L  L  T  N  W  P  H  M  A  *  Q  *  F  L  H  H  E  R  L  V  L  V  K  K  Q  R  K  S  C  K  K  K  V  *  M  W  Y  F  I  N  W  I  L  *  T  L  Y  Q  L  K  H  F  L  T  G  *  R  K  T  M  V  A  *  I  Y  W  *  S  I  Y  S  I  F  S  I  *  S  S  I  G  P  S  T  P  *  Y  L  Y  D  D  D  T  I  *  A  *  M  M  K  W  G  F  I  *  P  T  P  T  Y  L  G  L  R  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14139" stop="14015"/>
                    <exon start="13041" stop="12747"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LELKTLLVEELMGKKERAQERREQRRQEISLLRTIPYSDQQRWWSNETIAVVTGSNRGIGFEIAHQLASHGLTVVLTSRETRVGEEATKIMQEKGLNVVFHQLDIVDPVSVETFSDWIKENYGGLDILVIHLLYFLYII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="19314" PGL_stop="19766"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19314" e_stop="19766"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="19314" e_stop="19766" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19314" stop="19766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19314" stop="19498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485628" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAATAATATCAAATCTAATTTCTTCTTTTTCCTCCACTGTAAGGTACCTTCTGTTCAAAGTAGCGTTAGATCTGTGAAGAAAAGATCTATAAATAAAAAATTCAATCGTTTTGCCTATGCTGTGAAGAAATCGGAAGAATCAATTTTCTGGCATGTCAGTGGCTGGAGAGGCCGTAGAGCATGTGAATTTTCCAGCAATGGCAACAAAGGACCGGTCCGGATGTTGTAACCCGGTGAAGAAGGCCGGCCCGGTTTCGTTGGACCATGTGCTATCAGCTTTAGGTGAGACCAAGGAAGAGAGGGAGTCGAGAATCAGAAGCCTGTTTAGTTTCTTCGATTCTGACAATGCGGGGTACTTGGATTATGCGAAAATTGAGAAGGGTTTGTCTGCTATGCAAATTCCAGCGGAGTATAAGTTTGCTAAAGAATTATTGAATGGTTGTGATGCCAAT</gDNA_template>
            <first_frame> P  I  I  S  N  L  I  S  S  F  S  S  T  V  R  Y  L  L  F  K  V  A  L  D  L  *  R  K  D  L  *  I  K  N  S  I  V  L  P  M  L  *  R  N  R  K  N  Q  F  S  G  M  S  V  A  G  E  A  V  E  H  V  N  F  P  A  M  A  T  K  D  R  S  G  C  C  N  P  V  K  K  A  G  P  V  S  L  D  H  V  L  S  A  L  G  E  T  K  E  E  R  E  S  R  I  R  S  L  F  S  F  F  D  S  D  N  A  G  Y  L  D  Y  A  K  I  E  K  G  L  S  A  M  Q  I  P  A  E  Y  K  F  A  K  E  L  L  N  G  C  D  A  N </first_frame>
            <second_frame>  Q  *  Y  Q  I  *  F  L  L  F  P  P  L  *  G  T  F  C  S  K  *  R  *  I  C  E  E  K  I  Y  K  *  K  I  Q  S  F  C  L  C  C  E  E  I  G  R  I  N  F  L  A  C  Q  W  L  E  R  P  *  S  M  *  I  F  Q  Q  W  Q  Q  R  T  G  P  D  V  V  T  R  *  R  R  P  A  R  F  R  W  T  M  C  Y  Q  L  *  V  R  P  R  K  R  G  S  R  E  S  E  A  C  L  V  S  S  I  L  T  M  R  G  T  W  I  M  R  K  L  R  R  V  C  L  L  C  K  F  Q  R  S  I  S  L  L  K  N  Y  *  M  V  V  M  P   </second_frame>
            <third_frame>   N  N  I  K  S  N  F  F  F  F  L  H  C  K  V  P  S  V  Q  S  S  V  R  S  V  K  K  R  S  I  N  K  K  F  N  R  F  A  Y  A  V  K  K  S  E  E  S  I  F  W  H  V  S  G  W  R  G  R  R  A  C  E  F  S  S  N  G  N  K  G  P  V  R  M  L  *  P  G  E  E  G  R  P  G  F  V  G  P  C  A  I  S  F  R  *  D  Q  G  R  E  G  V  E  N  Q  K  P  V  *  F  L  R  F  *  Q  C  G  V  L  G  L  C  E  N  *  E  G  F  V  C  Y  A  N  S  S  G  V  *  V  C  *  R  I  I  E  W  L  *  C  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19440" stop="19766"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNRKNQFSGMSVAGEAVEHVNFPAMATKDRSGCCNPVKKAGPVSLDHVLSALGETKEERESRIRSLFSFFDSDNAGYLDYAKIEKGLSAMQIPAEYKFAKELLNGCDAN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="24764" PGL_stop="26211"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24764" e_stop="25380"/>
            <exon e_start="25474" e_stop="25564"/>
            <exon e_start="25684" e_stop="26211"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.165" acc_prob="0.925" e_score="0.992"/>
          <exon-intron don_prob="0.993" acc_prob="0.879" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="24764" e_stop="25380" e_length="617"/>
          </exon>
          <intron i_serial="1" don_prob="0.165" acc_prob="0.925">
            <gDNA_intron_boundary i_start="25381" i_stop="25473" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25474" e_stop="25564" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.879">
            <gDNA_intron_boundary i_start="25565" i_stop="25683" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25684" e_stop="26211" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24764" stop="25369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25094" stop="25380"/>
              <exon start="25474" stop="25564"/>
              <exon start="25684" stop="25993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25715" stop="26211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311766" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAGCAGACAGTCATACCGGAAGGCATCAGTAAGCATGTTCATGCATCCAAATACCTGATTGCAGGGGGAGTTGCAGGAGCTGCTTCGCGTACTGCCACAGCACCTCTTGATCGCGTTAAGGTCATTTTACAAGTGCAAACAACTCATGCTTCAATTGGTCCTGCAGTCAAAAGCATATGGAAGGAAGGTGGTCTATTGGGGTTTTTCCGTGGCAATGGGCTAAATGTGTTGAAGGTTGCACCAGAAAGTGCAATTAAATTTTACGCATATGAAACCTTGAAAAATGCTATTGGTCGTGCCAGGGGTGTTGAAGATCAGAGAGACATAGGAACTTCTGGGCGTCTTGTGGCTGGTGGAATGGCAGGTGCAATAGCACAAACTGCTATATATCCCATGGATCTTGTTAAAACTCGGTTACAGACTCATTCATGTGAGAGTGGAAGCGTTCCTAGTCTGCGAAAACTATCAAAAGATATTTTTATACAAGAGGGACCTCGGGCATTTTATAGAGGATTGGTACCATCTCTGCTTGGAATCATCCCTTATGCAGGCATTGATTTAGCTGCATATGAAACTTTAAAGGATTTGTCAAAGGTTTACATTCTTCATGATAGTG : AAGCCGGCCCTCTTGTGCAACTGGGATGTGGGACTATTTCAGGAGCCCTGGGAGCAACATGTGTTTATCCTTTGCAGGTTATTCGGACCAG : AATGCAAGCTGATTCTGCATACCAAGGTATGGCTGATGTGTTCCGAAAAACAGTTCAGCGTGAAGGCTTCAGGGGATTCTACAAAGGACTTTTTCCAAATCTTTTAAAAGTTGTGCCAGCAGCAAGCATAACCTATCTTGTGTACGAATCAATGAAAAAGAGTCTAGATCTTGATTAGCTGACATAGAGTCAGCAGCAGATTTCAGGTTCAAACTGCTGATGAAGATGATGATGATAATGTGACATTAAATAAGATAAATTTAGCTCATTGGTGATATGATTATCAAAATCATACACCTGATTTTTGACTCCCCATTGGTTATCGATATCGGCGGGGTTATAGTTATAGAGTTTTGTTTGTAGATTCAACTGACAAAATGACTACGTTGGCAATTGAGAATAGTCCTCTTTTACAATGTATGTCTGAGTTATAGGAATATCAATTCTACACTTTTTGGCAACTACATGTTAAATGAAAAAAGTGATGTGCTGACTTTTTAAGGTTTTTGCTATATGGATTATATGCAA</gDNA_template>
            <first_frame> G  A  D  S  H  T  G  R  H  Q  *  A  C  S  C  I  Q  I  P  D  C  R  G  S  C  R  S  C  F  A  Y  C  H  S  T  S  *  S  R  *  G  H  F  T  S  A  N  N  S  C  F  N  W  S  C  S  Q  K  H  M  E  G  R  W  S  I  G  V  F  P  W  Q  W  A  K  C  V  E  G  C  T  R  K  C  N  *  I  L  R  I  *  N  L  E  K  C  Y  W  S  C  Q  G  C  *  R  S  E  R  H  R  N  F  W  A  S  C  G  W  W  N  G  R  C  N  S  T  N  C  Y  I  S  H  G  S  C  *  N  S  V  T  D  S  F  M  *  E  W  K  R  S  *  S  A  K  T  I  K  R  Y  F  Y  T  R  G  T  S  G  I  L  *  R  I  G  T  I  S  A  W  N  H  P  L  C  R  H  *  F  S  C  I  *  N  F  K  G  F  V  K  G  L  H  S  S  *  *  * :   S  R  P  S  C  A  T  G  M  W  D  Y  F  R  S  P  G  S  N  M  C  L  S  F  A  G  Y  S  D  Q  :  N  A  S  *  F  C  I  P  R  Y  G  *  C  V  P  K  N  S  S  A  *  R  L  Q  G  I  L  Q  R  T  F  S  K  S  F  K  S  C  A  S  S  K  H  N  L  S  C  V  R  I  N  E  K  E  S  R  S  *  L  A  D  I  E  S  A  A  D  F  R  F  K  L  L  M  K  M  M  M  I  M  *  H  *  I  R  *  I  *  L  I  G  D  M  I  I  K  I  I  H  L  I  F  D  S  P  L  V  I  D  I  G  G  V  I  V  I  E  F  C  L  *  I  Q  L  T  K  *  L  R  W  Q  L  R  I  V  L  F  Y  N  V  C  L  S  Y  R  N  I  N  S  T  L  F  G  N  Y  M  L  N  E  K  S  D  V  L  T  F  *  G  F  C  Y  M  D  Y  M  Q </first_frame>
            <second_frame>  E  Q  T  V  I  P  E  G  I  S  K  H  V  H  A  S  K  Y  L  I  A  G  G  V  A  G  A  A  S  R  T  A  T  A  P  L  D  R  V  K  V  I  L  Q  V  Q  T  T  H  A  S  I  G  P  A  V  K  S  I  W  K  E  G  G  L  L  G  F  F  R  G  N  G  L  N  V  L  K  V  A  P  E  S  A  I  K  F  Y  A  Y  E  T  L  K  N  A  I  G  R  A  R  G  V  E  D  Q  R  D  I  G  T  S  G  R  L  V  A  G  G  M  A  G  A  I  A  Q  T  A  I  Y  P  M  D  L  V  K  T  R  L  Q  T  H  S  C  E  S  G  S  V  P  S  L  R  K  L  S  K  D  I  F  I  Q  E  G  P  R  A  F  Y  R  G  L  V  P  S  L  L  G  I  I  P  Y  A  G  I  D  L  A  A  Y  E  T  L  K  D  L  S  K  V  Y  I  L  H  D  S   : E  A  G  P  L  V  Q  L  G  C  G  T  I  S  G  A  L  G  A  T  C  V  Y  P  L  Q  V  I  R  T  R :   M  Q  A  D  S  A  Y  Q  G  M  A  D  V  F  R  K  T  V  Q  R  E  G  F  R  G  F  Y  K  G  L  F  P  N  L  L  K  V  V  P  A  A  S  I  T  Y  L  V  Y  E  S  M  K  K  S  L  D  L  D  *  L  T  *  S  Q  Q  Q  I  S  G  S  N  C  *  *  R  *  *  *  *  C  D  I  K  *  D  K  F  S  S  L  V  I  *  L  S  K  S  Y  T  *  F  L  T  P  H  W  L  S  I  S  A  G  L  *  L  *  S  F  V  C  R  F  N  *  Q  N  D  Y  V  G  N  *  E  *  S  S  F  T  M  Y  V  *  V  I  G  I  S  I  L  H  F  L  A  T  T  C  *  M  K  K  V  M  C  *  L  F  K  V  F  A  I  W  I  I  C   </second_frame>
            <third_frame>   S  R  Q  S  Y  R  K  A  S  V  S  M  F  M  H  P  N  T  *  L  Q  G  E  L  Q  E  L  L  R  V  L  P  Q  H  L  L  I  A  L  R  S  F  Y  K  C  K  Q  L  M  L  Q  L  V  L  Q  S  K  A  Y  G  R  K  V  V  Y  W  G  F  S  V  A  M  G  *  M  C  *  R  L  H  Q  K  V  Q  L  N  F  T  H  M  K  P  *  K  M  L  L  V  V  P  G  V  L  K  I  R  E  T  *  E  L  L  G  V  L  W  L  V  E  W  Q  V  Q  *  H  K  L  L  Y  I  P  W  I  L  L  K  L  G  Y  R  L  I  H  V  R  V  E  A  F  L  V  C  E  N  Y  Q  K  I  F  L  Y  K  R  D  L  G  H  F  I  E  D  W  Y  H  L  C  L  E  S  S  L  M  Q  A  L  I  *  L  H  M  K  L  *  R  I  C  Q  R  F  T  F  F  M  I  V  :  K  P  A  L  L  C  N  W  D  V  G  L  F  Q  E  P  W  E  Q  H  V  F  I  L  C  R  L  F  G  P   : E  C  K  L  I  L  H  T  K  V  W  L  M  C  S  E  K  Q  F  S  V  K  A  S  G  D  S  T  K  D  F  F  Q  I  F  *  K  L  C  Q  Q  Q  A  *  P  I  L  C  T  N  Q  *  K  R  V  *  I  L  I  S  *  H  R  V  S  S  R  F  Q  V  Q  T  A  D  E  D  D  D  D  N  V  T  L  N  K  I  N  L  A  H  W  *  Y  D  Y  Q  N  H  T  P  D  F  *  L  P  I  G  Y  R  Y  R  R  G  Y  S  Y  R  V  L  F  V  D  S  T  D  K  M  T  T  L  A  I  E  N  S  P  L  L  Q  C  M  S  E  L  *  E  Y  Q  F  Y  T  F  W  Q  L  H  V  K  *  K  K  *  C  A  D  F  L  R  F  L  L  Y  G  L  Y  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24765" stop="25380"/>
                    <exon start="25474" stop="25564"/>
                    <exon start="25684" stop="25861"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQTVIPEGISKHVHASKYLIAGGVAGAASRTATAPLDRVKVILQVQTTHASIGPAVKSIWKEGGLLGFFRGNGLNVLKVAPESAIKFYAYETLKNAIGRARGVEDQRDIGTSGRLVAGGMAGAIAQTAIYPMDLVKTRLQTHSCESGSVPSLRKLSKDIFIQEGPRAFYRGLVPSLLGIIPYAGIDLAAYETLKDLSKVYILHDSEAGPLVQLGCGTISGALGATCVYPLQVIRTRMQADSAYQGMADVFRKTVQREGFRGFYKGLFPNLLKVVPAASITYLVYESMKKSLDLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="26845" PGL_stop="28965"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27840" e_stop="27888"/>
            <exon e_start="27976" e_stop="28086"/>
            <exon e_start="28190" e_stop="28218"/>
            <exon e_start="28314" e_stop="28741"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.998" e_score="0.911"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="0.991"/>
          <exon-intron don_prob="0.958" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="27840" e_stop="27888" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27889" i_stop="27975" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="27976" e_stop="28086" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28087" i_stop="28189" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28190" e_stop="28218" e_length="29"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28219" i_stop="28313" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="0.920">
            <gDNA_exon_boundary e_start="28314" e_stop="28741" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27840" stop="27888"/>
              <exon start="27976" stop="28086"/>
              <exon start="28190" stop="28218"/>
              <exon start="28314" stop="28639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27844" stop="27888"/>
              <exon start="27976" stop="28086"/>
              <exon start="28190" stop="28218"/>
              <exon start="28314" stop="28715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27844" stop="27888"/>
              <exon start="27976" stop="28086"/>
              <exon start="28190" stop="28218"/>
              <exon start="28314" stop="28711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423661" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27844" stop="27888"/>
              <exon start="27976" stop="28086"/>
              <exon start="28190" stop="28218"/>
              <exon start="28314" stop="28711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28193" stop="28218"/>
              <exon start="28314" stop="28741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458893" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAGCAATTTGCAACATCCGTGATCATACAAAAGCTTCAAGGCAATATG : GGTATTCCAAAGATTTCAAATGACACTGACTTGCTTCACCCTCCTGCTGAGCTTGAGAAGCAAAAGCACAAGCTTAAGCGTTTGGTCCAATCACCTAATTCTACTTTTCTG : GATGTCAAATGCCAAGGCTGCTTCCAAAT : AACAACAATTTTCAGCCACTCGCAAACCGTGGTTACATGCCCCAATTGCCAGCAAGTGCTATGCCAGCCAACCGGTGGCCGTGCAAAACTTACTGAAGGATGCTCTTTTAGGGTTAAAGAGAAGGATATGATGGTCTTGGGTTGATACTTGCTAGAGGTGCTTTTAAGCTATGATATATTTTACATTAGGTTTTTGAGGAATGAGTCGGTTAAGAAAACTTTTCATTTACTCAGTACTTCTTTTGTGGCATTCTGACTATAATATTGTCCATCTTGTTAGTTTTGACACATTTTTGAAGTAATTAATCTTCTACTCCATATTTGCTTGTGCATTCATGTGTTGGTTTTGATGTTTAATGCTAGAACTGCATCTTATTCTGATTTTTTTTATTTACATGGCACTTAGTTTCATTGTGTAAACATGCTTT</gDNA_template>
            <first_frame> T  A  I  C  N  I  R  D  H  T  K  A  S  R  Q  Y   : G  Y  S  K  D  F  K  *  H  *  L  A  S  P  S  C  *  A  *  E  A  K  A  Q  A  *  A  F  G  P  I  T  *  F  Y  F  S   : G  C  Q  M  P  R  L  L  P  N  :  N  N  N  F  Q  P  L  A  N  R  G  Y  M  P  Q  L  P  A  S  A  M  P  A  N  R  W  P  C  K  T  Y  *  R  M  L  F  *  G  *  R  E  G  Y  D  G  L  G  L  I  L  A  R  G  A  F  K  L  *  Y  I  L  H  *  V  F  E  E  *  V  G  *  E  N  F  S  F  T  Q  Y  F  F  C  G  I  L  T  I  I  L  S  I  L  L  V  L  T  H  F  *  S  N  *  S  S  T  P  Y  L  L  V  H  S  C  V  G  F  D  V  *  C  *  N  C  I  L  F  *  F  F  L  F  T  W  H  L  V  S  L  C  K  H  A   </first_frame>
            <second_frame>  Q  Q  F  A  T  S  V  I  I  Q  K  L  Q  G  N  M  :  G  I  P  K  I  S  N  D  T  D  L  L  H  P  P  A  E  L  E  K  Q  K  H  K  L  K  R  L  V  Q  S  P  N  S  T  F  L  :  D  V  K  C  Q  G  C  F  Q  I :   T  T  I  F  S  H  S  Q  T  V  V  T  C  P  N  C  Q  Q  V  L  C  Q  P  T  G  G  R  A  K  L  T  E  G  C  S  F  R  V  K  E  K  D  M  M  V  L  G  *  Y  L  L  E  V  L  L  S  Y  D  I  F  Y  I  R  F  L  R  N  E  S  V  K  K  T  F  H  L  L  S  T  S  F  V  A  F  *  L  *  Y  C  P  S  C  *  F  *  H  I  F  E  V  I  N  L  L  L  H  I  C  L  C  I  H  V  L  V  L  M  F  N  A  R  T  A  S  Y  S  D  F  F  Y  L  H  G  T  *  F  H  C  V  N  M  L  </second_frame>
            <third_frame>   S  N  L  Q  H  P  *  S  Y  K  S  F  K  A  I  W :   V  F  Q  R  F  Q  M  T  L  T  C  F  T  L  L  L  S  L  R  S  K  S  T  S  L  S  V  W  S  N  H  L  I  L  L  F  W :   M  S  N  A  K  A  A  S  K   : *  Q  Q  F  S  A  T  R  K  P  W  L  H  A  P  I  A  S  K  C  Y  A  S  Q  P  V  A  V  Q  N  L  L  K  D  A  L  L  G  L  K  R  R  I  *  W  S  W  V  D  T  C  *  R  C  F  *  A  M  I  Y  F  T  L  G  F  *  G  M  S  R  L  R  K  L  F  I  Y  S  V  L  L  L  W  H  S  D  Y  N  I  V  H  L  V  S  F  D  T  F  L  K  *  L  I  F  Y  S  I  F  A  C  A  F  M  C  W  F  *  C  L  M  L  E  L  H  L  I  L  I  F  F  I  Y  M  A  L  S  F  I  V  *  T  C  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27841" stop="27888"/>
                    <exon start="27976" stop="28086"/>
                    <exon start="28190" stop="28218"/>
                    <exon start="28314" stop="28458"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQFATSVIIQKLQGNMGIPKISNDTDLLHPPAELEKQKHKLKRLVQSPNSTFLDVKCQGCFQITTIFSHSQTVVTCPNCQQVLCQPTGGRAKLTEGCSFRVKEKDMMVLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26845" e_stop="26884"/>
            <exon e_start="27844" e_stop="27888"/>
            <exon e_start="27976" e_stop="28086"/>
            <exon e_start="28190" e_stop="28218"/>
            <exon e_start="28314" e_stop="28645"/>
            <exon e_start="28924" e_stop="28965"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="0.982"/>
          <exon-intron don_prob="0.958" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.970"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26845" e_stop="26884" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.987">
            <gDNA_intron_boundary i_start="26885" i_stop="27843" i_length="959"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27844" e_stop="27888" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27889" i_stop="27975" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="27976" e_stop="28086" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28087" i_stop="28189" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28190" e_stop="28218" e_length="29"/>
          </exon>
          <intron i_serial="4" don_prob="0.958" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28219" i_stop="28313" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="0.970">
            <gDNA_exon_boundary e_start="28314" e_stop="28645" e_length="332"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28646" i_stop="28923" i_length="278"/>
          </intron>
          <exon e_serial="6" e_score="0.667">
            <gDNA_exon_boundary e_start="28924" e_stop="28965" e_length="42"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26845" stop="26884"/>
              <exon start="27844" stop="27888"/>
              <exon start="27976" stop="28086"/>
              <exon start="28190" stop="28218"/>
              <exon start="28314" stop="28645"/>
              <exon start="28924" stop="28965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721878" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACAAGGAACAGAGCTTAGGGTTTTTTTTTTTATTGGAG : CAATTTGCAACATCCGTGATCATACAAAAGCTTCAAGGCAATATG : GGTATTCCAAAGATTTCAAATGACACTGACTTGCTTCACCCTCCTGCTGAGCTTGAGAAGCAAAAGCACAAGCTTAAGCGTTTGGTCCAATCACCTAATTCTACTTTTCTG : GATGTCAAATGCCAAGGCTGCTTCCAAAT : AACAACAATTTTCAGCCACTCGCAAACCGTGGTTACATGCCCCAATTGCCAGCAAGTGCTATGCCAGCCAACCGGTGGCCGTGCAAAACTTACTGAAGGATGCTCTTTTAGGGTTAAAGAGAAGGATATGATGGTCTTGGGTTGATACTTGCTAGAGGTGCTTTTAAGCTATGATATATTTTACATTAGGTTTTTGAGGAATGAGTCGGTTAAGAAAACTTTTCATTTACTCAGTACTTCTTTTGTGGCATTCTGACTATAATATTGTCCATCTTGTTAGTTTTGACACATTTTTGAAGTAATTAATCTTCTACTCCATATTTGCTTGTGCA : AAAAACATTAACCCAAAACACAACAAAGGAAAAAAGAAAGAT</gDNA_template>
            <first_frame> K  Q  G  T  E  L  R  V  F  F  F  I  G   : A  I  C  N  I  R  D  H  T  K  A  S  R  Q  Y   : G  Y  S  K  D  F  K  *  H  *  L  A  S  P  S  C  *  A  *  E  A  K  A  Q  A  *  A  F  G  P  I  T  *  F  Y  F  S   : G  C  Q  M  P  R  L  L  P  N  :  N  N  N  F  Q  P  L  A  N  R  G  Y  M  P  Q  L  P  A  S  A  M  P  A  N  R  W  P  C  K  T  Y  *  R  M  L  F  *  G  *  R  E  G  Y  D  G  L  G  L  I  L  A  R  G  A  F  K  L  *  Y  I  L  H  *  V  F  E  E  *  V  G  *  E  N  F  S  F  T  Q  Y  F  F  C  G  I  L  T  I  I  L  S  I  L  L  V  L  T  H  F  *  S  N  *  S  S  T  P  Y  L  L  V  Q :   K  T  L  T  Q  N  T  T  K  E  K  R  K   </first_frame>
            <second_frame>  N  K  E  Q  S  L  G  F  F  F  L  L  E  :  Q  F  A  T  S  V  I  I  Q  K  L  Q  G  N  M  :  G  I  P  K  I  S  N  D  T  D  L  L  H  P  P  A  E  L  E  K  Q  K  H  K  L  K  R  L  V  Q  S  P  N  S  T  F  L  :  D  V  K  C  Q  G  C  F  Q  I :   T  T  I  F  S  H  S  Q  T  V  V  T  C  P  N  C  Q  Q  V  L  C  Q  P  T  G  G  R  A  K  L  T  E  G  C  S  F  R  V  K  E  K  D  M  M  V  L  G  *  Y  L  L  E  V  L  L  S  Y  D  I  F  Y  I  R  F  L  R  N  E  S  V  K  K  T  F  H  L  L  S  T  S  F  V  A  F  *  L  *  Y  C  P  S  C  *  F  *  H  I  F  E  V  I  N  L  L  L  H  I  C  L  C   : K  K  H  *  P  K  T  Q  Q  R  K  K  E  R  </second_frame>
            <third_frame>   T  R  N  R  A  *  G  F  F  F  Y  W  S :   N  L  Q  H  P  *  S  Y  K  S  F  K  A  I  W :   V  F  Q  R  F  Q  M  T  L  T  C  F  T  L  L  L  S  L  R  S  K  S  T  S  L  S  V  W  S  N  H  L  I  L  L  F  W :   M  S  N  A  K  A  A  S  K   : *  Q  Q  F  S  A  T  R  K  P  W  L  H  A  P  I  A  S  K  C  Y  A  S  Q  P  V  A  V  Q  N  L  L  K  D  A  L  L  G  L  K  R  R  I  *  W  S  W  V  D  T  C  *  R  C  F  *  A  M  I  Y  F  T  L  G  F  *  G  M  S  R  L  R  K  L  F  I  Y  S  V  L  L  L  W  H  S  D  Y  N  I  V  H  L  V  S  F  D  T  F  L  K  *  L  I  F  Y  S  I  F  A  C  A  :  K  N  I  N  P  K  H  N  K  G  K  K  K  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26846" stop="26884"/>
                    <exon start="27844" stop="27888"/>
                    <exon start="27976" stop="28086"/>
                    <exon start="28190" stop="28218"/>
                    <exon start="28314" stop="28458"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKEQSLGFFFLLEQFATSVIIQKLQGNMGIPKISNDTDLLHPPAELEKQKHKLKRLVQSPNSTFLDVKCQGCFQITTIFSHSQTVVTCPNCQQVLCQPTGGRAKLTEGCSFRVKEKDMMVLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="34872" PGL_stop="33678"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34872" e_stop="34767"/>
            <exon e_start="34662" e_stop="34438"/>
            <exon e_start="34323" e_stop="34090"/>
            <exon e_start="33878" e_stop="33678"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="0.981"/>
          <exon-intron don_prob="0.999" acc_prob="0.252" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="34872" e_stop="34767" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="34766" i_stop="34663" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34662" e_stop="34438" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.252">
            <gDNA_intron_boundary i_start="34437" i_stop="34324" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34323" e_stop="34090" e_length="234"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="34089" i_stop="33879" i_length="211"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="33878" e_stop="33678" e_length="201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34872" stop="34767"/>
              <exon start="34662" stop="34438"/>
              <exon start="34323" stop="34090"/>
              <exon start="33878" stop="33678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697871" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGGATCCAGATGATCTTTCGTCCAGGGACATCATGTTAGGTGATCCATTTTCAGTTGATATTACAAAACTCACTGTTGGGTATCTCGAAGACGCTGACAAGGAA : GTTGTTGGTGTACTTAGATCAAAGGGAGTGAATATGGTTCCATTTAATCTGGATTACACTGTTGATAGTGCTCAAGGTATTGTTAGCTTCACTATGGATGTTGACATGCTAGCTCATTTTGACGAGTGGCAGCGCTCAAACCAGGATGATGAATTTGAAGCTCAAGACCAATGGCCTCTTGAACTTCGTCGTGCCCGTGTTATATCTGCTGTAGACTATATTCAG : GCACAGAGAAGTCGAAGCAAATTGATTCAGGAAGTGAAAGAGAACTTCACAGTTGATGCATTTATTGGAGATTCAGGTGACTGGGAGAAAGTTTGTGTGGGCAATCTTGTGGGTATGCCAGTAGTGGTGGTTCCAACAGGTTTTAAGAAGATATCCAATGCATCGTCTGATGATACTCGCAGGAAGACAACAATAACTACTGGCATTTATGCTCCTCCTGACCACGATCATGTT : GCTTTAGCATTGGCAATGGCGTATCAGTCACTAACCAACCATCACAAGCAGCGCCCTCCAATTGACGACATTGGGCCAAATGATTCAATTCCAAACCCACCCACTTCCACTGTACCCGCAAGACAACTACGTGATTACTAATCTCTCAAGGGTATTCAATGTCACTCTGTGTTGTCCTTTTAACTTGTTATTATAGATGTA</gDNA_template>
            <first_frame> K  G  S  R  *  S  F  V  Q  G  H  H  V  R  *  S  I  F  S  *  Y  Y  K  T  H  C  W  V  S  R  R  R  *  Q  G   : S  C  W  C  T  *  I  K  G  S  E  Y  G  S  I  *  S  G  L  H  C  *  *  C  S  R  Y  C  *  L  H  Y  G  C  *  H  A  S  S  F  *  R  V  A  A  L  K  P  G  *  *  I  *  S  S  R  P  M  A  S  *  T  S  S  C  P  C  Y  I  C  C  R  L  Y  S   : G  T  E  K  S  K  Q  I  D  S  G  S  E  R  E  L  H  S  *  C  I  Y  W  R  F  R  *  L  G  E  S  L  C  G  Q  S  C  G  Y  A  S  S  G  G  S  N  R  F  *  E  D  I  Q  C  I  V  *  *  Y  S  Q  E  D  N  N  N  Y  W  H  L  C  S  S  *  P  R  S  C   : C  F  S  I  G  N  G  V  S  V  T  N  Q  P  S  Q  A  A  P  S  N  *  R  H  W  A  K  *  F  N  S  K  P  T  H  F  H  C  T  R  K  T  T  T  *  L  L  I  S  Q  G  Y  S  M  S  L  C  V  V  L  L  T  C  Y  Y  R  C  </first_frame>
            <second_frame>  K  D  P  D  D  L  S  S  R  D  I  M  L  G  D  P  F  S  V  D  I  T  K  L  T  V  G  Y  L  E  D  A  D  K  E  :  V  V  G  V  L  R  S  K  G  V  N  M  V  P  F  N  L  D  Y  T  V  D  S  A  Q  G  I  V  S  F  T  M  D  V  D  M  L  A  H  F  D  E  W  Q  R  S  N  Q  D  D  E  F  E  A  Q  D  Q  W  P  L  E  L  R  R  A  R  V  I  S  A  V  D  Y  I  Q  :  A  Q  R  S  R  S  K  L  I  Q  E  V  K  E  N  F  T  V  D  A  F  I  G  D  S  G  D  W  E  K  V  C  V  G  N  L  V  G  M  P  V  V  V  V  P  T  G  F  K  K  I  S  N  A  S  S  D  D  T  R  R  K  T  T  I  T  T  G  I  Y  A  P  P  D  H  D  H  V  :  A  L  A  L  A  M  A  Y  Q  S  L  T  N  H  H  K  Q  R  P  P  I  D  D  I  G  P  N  D  S  I  P  N  P  P  T  S  T  V  P  A  R  Q  L  R  D  Y  *  S  L  K  G  I  Q  C  H  S  V  L  S  F  *  L  V  I  I  D  V </second_frame>
            <third_frame>   R  I  Q  M  I  F  R  P  G  T  S  C  *  V  I  H  F  Q  L  I  L  Q  N  S  L  L  G  I  S  K  T  L  T  R  K :   L  L  V  Y  L  D  Q  R  E  *  I  W  F  H  L  I  W  I  T  L  L  I  V  L  K  V  L  L  A  S  L  W  M  L  T  C  *  L  I  L  T  S  G  S  A  Q  T  R  M  M  N  L  K  L  K  T  N  G  L  L  N  F  V  V  P  V  L  Y  L  L  *  T  I  F  R :   H  R  E  V  E  A  N  *  F  R  K  *  K  R  T  S  Q  L  M  H  L  L  E  I  Q  V  T  G  R  K  F  V  W  A  I  L  W  V  C  Q  *  W  W  F  Q  Q  V  L  R  R  Y  P  M  H  R  L  M  I  L  A  G  R  Q  Q  *  L  L  A  F  M  L  L  L  T  T  I  M  L :   L  *  H  W  Q  W  R  I  S  H  *  P  T  I  T  S  S  A  L  Q  L  T  T  L  G  Q  M  I  Q  F  Q  T  H  P  L  P  L  Y  P  Q  D  N  Y  V  I  T  N  L  S  R  V  F  N  V  T  L  C  C  P  F  N  L  L  L  *  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34871" stop="34767"/>
                    <exon start="34662" stop="34438"/>
                    <exon start="34323" stop="34090"/>
                    <exon start="33878" stop="33738"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDPDDLSSRDIMLGDPFSVDITKLTVGYLEDADKEVVGVLRSKGVNMVPFNLDYTVDSAQGIVSFTMDVDMLAHFDEWQRSNQDDEFEAQDQWPLELRRARVISAVDYIQAQRSRSKLIQEVKENFTVDAFIGDSGDWEKVCVGNLVGMPVVVVPTGFKKISNASSDDTRRKTTITTGIYAPPDHDHVALALAMAYQSLTNHHKQRPPIDDIGPNDSIPNPPTSTVPARQLRDY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="37164" PGL_stop="35573"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37164" e_stop="37138"/>
            <exon e_start="37039" e_stop="36925"/>
            <exon e_start="36734" e_stop="36510"/>
            <exon e_start="36421" e_stop="36339"/>
            <exon e_start="36244" e_stop="36144"/>
            <exon e_start="35975" e_stop="35852"/>
            <exon e_start="35690" e_stop="35573"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.766" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.549" acc_prob="0.769" e_score="1.000"/>
          <exon-intron don_prob="0.451" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.689" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.438" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37164" e_stop="37138" e_length="27"/>
          </exon>
          <intron i_serial="1" don_prob="0.766" acc_prob="0.920">
            <gDNA_intron_boundary i_start="37137" i_stop="37040" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37039" e_stop="36925" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="0.549" acc_prob="0.769">
            <gDNA_intron_boundary i_start="36924" i_stop="36735" i_length="190"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36734" e_stop="36510" e_length="225"/>
          </exon>
          <intron i_serial="3" don_prob="0.451" acc_prob="0.995">
            <gDNA_intron_boundary i_start="36509" i_stop="36422" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36421" e_stop="36339" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.689">
            <gDNA_intron_boundary i_start="36338" i_stop="36245" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36244" e_stop="36144" e_length="101"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="36143" i_stop="35976" i_length="168"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="35975" e_stop="35852" e_length="124"/>
          </exon>
          <intron i_serial="6" don_prob="0.438" acc_prob="0.998">
            <gDNA_intron_boundary i_start="35851" i_stop="35691" i_length="161"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="35690" e_stop="35573" e_length="118"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37164" stop="37138"/>
              <exon start="37039" stop="36925"/>
              <exon start="36734" stop="36510"/>
              <exon start="36421" stop="36339"/>
              <exon start="36244" stop="36144"/>
              <exon start="35975" stop="35852"/>
              <exon start="35690" stop="35573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727842" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTTATTCCCGGGACTTCACCTCAAG : TGGGAAATTAGGGCCTAAAAACTGTGGCGAACACTTGGAACAAGCCAAAAATGAGTTTCCGGTATGTAAATGTGGATTCGACATGTTGGATGCTGGCTTTTTCAATGACTGTAAG : AAGCTTGAAATACAGAAGGGCGCAAAAGATTTTAACATTCCTATAATAAGATCGAACCGGAAGTTAGTTGCTACTGAGAATGGAGGTTTGCGTGACCCGTCTCCTTTAGTTTTCAATTCTGCATGGAAATCCCAGGAAGCAAAGCGAGTAACGGACAAGTTCAATTATTCTGAATGCTCTGGCATTCAAAGGCCGAAAAATGATGAGGATATTGCTTTCATGAGT : GTTCTTGAACTCGGGCAACTTTTCAAGGAAAAATTGATTACATCCGAGGAACTCACTCGAATTTTTCTGAACAGATTAAAAAG : GTACGGCCCTGTCCTTGAATCTGTTATCACAATTACTGAAGAATTAGCATTTCAGCAAGCAAAAGAGGCTGATCAAGTGCTTGCAAAAGGAAAATATTTGG : GTCCTCTTCATGGGATCCCATATGGTCTAAAGGACATTATTGCAGTACCAGATTATCCCACAACATGGGGTTCCAAGTCTTTCAAAGATCAAGTTATTGATGTCGAAGCTTGGGTTTATAAGAG : GCTGAAATCTGCTGGTGCAATTCTTGTTGCAAAGTTGGTCTCTGGTTCTTTAGCTTATGACGATATCTGGTTCGGTGGTAGAACAAGAAACCCCTGGAATATCGAAGAATTTTCTACT</gDNA_template>
            <first_frame> G  L  F  P  G  L  H  L  K  :  W  E  I  R  A  *  K  L  W  R  T  L  G  T  S  Q  K  *  V  S  G  M  *  M  W  I  R  H  V  G  C  W  L  F  Q  *  L  *   : E  A  *  N  T  E  G  R  K  R  F  *  H  S  Y  N  K  I  E  P  E  V  S  C  Y  *  E  W  R  F  A  *  P  V  S  F  S  F  Q  F  C  M  E  I  P  G  S  K  A  S  N  G  Q  V  Q  L  F  *  M  L  W  H  S  K  A  E  K  *  *  G  Y  C  F  H  E   : C  S  *  T  R  A  T  F  Q  G  K  I  D  Y  I  R  G  T  H  S  N  F  S  E  Q  I  K  K  :  V  R  P  C  P  *  I  C  Y  H  N  Y  *  R  I  S  I  S  A  S  K  R  G  *  S  S  A  C  K  R  K  I  F  G :   S  S  S  W  D  P  I  W  S  K  G  H  Y  C  S  T  R  L  S  H  N  M  G  F  Q  V  F  Q  R  S  S  Y  *  C  R  S  L  G  L  *  E  :  A  E  I  C  W  C  N  S  C  C  K  V  G  L  W  F  F  S  L  *  R  Y  L  V  R  W  *  N  K  K  P  L  E  Y  R  R  I  F  Y  </first_frame>
            <second_frame>  V  Y  S  R  D  F  T  S  S :   G  K  L  G  P  K  N  C  G  E  H  L  E  Q  A  K  N  E  F  P  V  C  K  C  G  F  D  M  L  D  A  G  F  F  N  D  C  K  :  K  L  E  I  Q  K  G  A  K  D  F  N  I  P  I  I  R  S  N  R  K  L  V  A  T  E  N  G  G  L  R  D  P  S  P  L  V  F  N  S  A  W  K  S  Q  E  A  K  R  V  T  D  K  F  N  Y  S  E  C  S  G  I  Q  R  P  K  N  D  E  D  I  A  F  M  S  :  V  L  E  L  G  Q  L  F  K  E  K  L  I  T  S  E  E  L  T  R  I  F  L  N  R  L  K  R :   Y  G  P  V  L  E  S  V  I  T  I  T  E  E  L  A  F  Q  Q  A  K  E  A  D  Q  V  L  A  K  G  K  Y  L   : G  P  L  H  G  I  P  Y  G  L  K  D  I  I  A  V  P  D  Y  P  T  T  W  G  S  K  S  F  K  D  Q  V  I  D  V  E  A  W  V  Y  K  R :   L  K  S  A  G  A  I  L  V  A  K  L  V  S  G  S  L  A  Y  D  D  I  W  F  G  G  R  T  R  N  P  W  N  I  E  E  F  S  T </second_frame>
            <third_frame>   F  I  P  G  T  S  P  Q   : V  G  N  *  G  L  K  T  V  A  N  T  W  N  K  P  K  M  S  F  R  Y  V  N  V  D  S  T  C  W  M  L  A  F  S  M  T  V  R :   S  L  K  Y  R  R  A  Q  K  I  L  T  F  L  *  *  D  R  T  G  S  *  L  L  L  R  M  E  V  C  V  T  R  L  L  *  F  S  I  L  H  G  N  P  R  K  Q  S  E  *  R  T  S  S  I  I  L  N  A  L  A  F  K  G  R  K  M  M  R  I  L  L  S  *  V :   F  L  N  S  G  N  F  S  R  K  N  *  L  H  P  R  N  S  L  E  F  F  *  T  D  *  K   : G  T  A  L  S  L  N  L  L  S  Q  L  L  K  N  *  H  F  S  K  Q  K  R  L  I  K  C  L  Q  K  E  N  I  W  :  V  L  F  M  G  S  H  M  V  *  R  T  L  L  Q  Y  Q  I  I  P  Q  H  G  V  P  S  L  S  K  I  K  L  L  M  S  K  L  G  F  I  R   : G  *  N  L  L  V  Q  F  L  L  Q  S  W  S  L  V  L  *  L  M  T  I  S  G  S  V  V  E  Q  E  T  P  G  I  S  K  N  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37163" stop="37138"/>
                    <exon start="37039" stop="36925"/>
                    <exon start="36734" stop="36510"/>
                    <exon start="36421" stop="36339"/>
                    <exon start="36244" stop="36144"/>
                    <exon start="35975" stop="35852"/>
                    <exon start="35690" stop="35573"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYSRDFTSSGKLGPKNCGEHLEQAKNEFPVCKCGFDMLDAGFFNDCKKLEIQKGAKDFNIPIIRSNRKLVATENGGLRDPSPLVFNSAWKSQEAKRVTDKFNYSECSGIQRPKNDEDIAFMSVLELGQLFKEKLITSEELTRIFLNRLKRYGPVLESVITITEELAFQQAKEADQVLAKGKYLGPLHGIPYGLKDIIAVPDYPTTWGSKSFKDQVIDVEAWVYKRLKSAGAILVAKLVSGSLAYDDIWFGGRTRNPWNIEEFST</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="40227" PGL_stop="39181"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40227" e_stop="40039"/>
            <exon e_start="39579" e_stop="39181"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="0.926"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="40227" e_stop="40039" e_length="189"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="40038" i_stop="39580" i_length="459"/>
          </intron>
          <exon e_serial="2" e_score="0.950">
            <gDNA_exon_boundary e_start="39579" e_stop="39181" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40227" stop="40039"/>
              <exon start="39579" stop="39181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40169" stop="40039"/>
              <exon start="39579" stop="39181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377222" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTATTGTACAAGTGTTTATGAAGAAGGTGATGCTCGATCTGCTCTCATCGCGATGCTTCAATCCATCAATCATGCTAAAAATGGTGTAGACATTGTATCTGGAACAAGAGTTAAGACTCATTTTGCTAGACCTAATTGGAGAGATGTCTACAAACGCATTGCTCTTAATCATACTGATGCAAGAGTTG : GAGTTTTCTACTGTGGGGCACCAGCACTGACGAAACAGCTTGGACAACTGGCCTTAGATTTTTCCCACAAGACATCAACAAAGTTTGATTTCCATAAAGAAAACTTTTGACCAATCATGGACTAGCAAAGGATCAAACCAAACAGATAACAACCATTTTTTTTTATAAAGAAGCATATATATCCACTACTTTCTTTTTTTTTTTTTTTATAGAAAATCTTGTTGATTTTGTTAATAGTTGGGTTTTGTATTGTTATACGAAAAGCAATTATTTTTGTGCAGCTCCACCCACCAGTACTGGATTGGATTACCAATTCAAATAATCCTTTTATTTTAATTTGTTCCTTTTGTAAAGGATATATCTATGTTGATTTATGTTAAACGATATTAAATGTCCACA</gDNA_template>
            <first_frame> I  I  V  Q  V  F  M  K  K  V  M  L  D  L  L  S  S  R  C  F  N  P  S  I  M  L  K  M  V  *  T  L  Y  L  E  Q  E  L  R  L  I  L  L  D  L  I  G  E  M  S  T  N  A  L  L  L  I  I  L  M  Q  E  L  :  E  F  S  T  V  G  H  Q  H  *  R  N  S  L  D  N  W  P  *  I  F  P  T  R  H  Q  Q  S  L  I  S  I  K  K  T  F  D  Q  S  W  T  S  K  G  S  N  Q  T  D  N  N  H  F  F  L  *  R  S  I  Y  I  H  Y  F  L  F  F  F  F  Y  R  K  S  C  *  F  C  *  *  L  G  F  V  L  L  Y  E  K  Q  L  F  L  C  S  S  T  H  Q  Y  W  I  G  L  P  I  Q  I  I  L  L  F  *  F  V  P  F  V  K  D  I  S  M  L  I  Y  V  K  R  Y  *  M  S  T </first_frame>
            <second_frame>  L  L  Y  K  C  L  *  R  R  *  C  S  I  C  S  H  R  D  A  S  I  H  Q  S  C  *  K  W  C  R  H  C  I  W  N  K  S  *  D  S  F  C  *  T  *  L  E  R  C  L  Q  T  H  C  S  *  S  Y  *  C  K  S  W :   S  F  L  L  W  G  T  S  T  D  E  T  A  W  T  T  G  L  R  F  F  P  Q  D  I  N  K  V  *  F  P  *  R  K  L  L  T  N  H  G  L  A  K  D  Q  T  K  Q  I  T  T  I  F  F  Y  K  E  A  Y  I  S  T  T  F  F  F  F  F  F  I  E  N  L  V  D  F  V  N  S  W  V  L  Y  C  Y  T  K  S  N  Y  F  C  A  A  P  P  T  S  T  G  L  D  Y  Q  F  K  *  S  F  Y  F  N  L  F  L  L  *  R  I  Y  L  C  *  F  M  L  N  D  I  K  C  P   </second_frame>
            <third_frame>   Y  C  T  S  V  Y  E  E  G  D  A  R  S  A  L  I  A  M  L  Q  S  I  N  H  A  K  N  G  V  D  I  V  S  G  T  R  V  K  T  H  F  A  R  P  N  W  R  D  V  Y  K  R  I  A  L  N  H  T  D  A  R  V   : G  V  F  Y  C  G  A  P  A  L  T  K  Q  L  G  Q  L  A  L  D  F  S  H  K  T  S  T  K  F  D  F  H  K  E  N  F  *  P  I  M  D  *  Q  R  I  K  P  N  R  *  Q  P  F  F  F  I  K  K  H  I  Y  P  L  L  S  F  F  F  F  L  *  K  I  L  L  I  L  L  I  V  G  F  C  I  V  I  R  K  A  I  I  F  V  Q  L  H  P  P  V  L  D  W  I  T  N  S  N  N  P  F  I  L  I  C  S  F  C  K  G  Y  I  Y  V  D  L  C  *  T  I  L  N  V  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40225" stop="40039"/>
                    <exon start="39579" stop="39470"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YCTSVYEEGDARSALIAMLQSINHAKNGVDIVSGTRVKTHFARPNWRDVYKRIALNHTDARVGVFYCGAPALTKQLGQLALDFSHKTSTKFDFHKENF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39482" stop="39258"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKLLTNHGLAKDQTKQITTIFFYKEAYISTTFFFFFFIENLVDFVNSWVLYCYTKSNYFCAAPPTSTGLDYQFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="41440" PGL_stop="41919"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41440" e_stop="41919"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="41440" e_stop="41919" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41440" stop="41919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41440" stop="41792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468358" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTAACTATTTATATGGCGAACTTGTCAGAATTGCCATCTCACCTCATTAGTACAGTTGCCGAGCGTGTTAAAGTGATTGAAGATTTTATTGCTTTTGGTGCTGTCTGCATCTCATGGCGAACTGCTGCCACTAAAGATAATTTTGATGTATACTCTCCACAAATTCCATTGCTTATGCTAGCAGATAAAGATGATGATTATCGAGAATTTTACTCTCTTTCCAAAAACAAAATTTCACGCATATTTCTCCCAGAAATTAGAGGGCGAAGATGTTTTCCATCAGAGGGAGGTTGGATGTTTACAGACTCATGTACAGGAGAATTTAACTTGTTTCATCCATTTTCCCGTACCCAGATTCAACTTCCTTCACAAAACGCCCTAAAGGAGTCTTTACAGAAAGATGCAGAAATAACTCATTACACAATTGACAAAGCTGTCTTGTCTGTAAATCCTTCTCATACATCAGATTATGTGCTCG</gDNA_template>
            <first_frame> L  *  L  F  I  W  R  T  C  Q  N  C  H  L  T  S  L  V  Q  L  P  S  V  L  K  *  L  K  I  L  L  L  L  V  L  S  A  S  H  G  E  L  L  P  L  K  I  I  L  M  Y  T  L  H  K  F  H  C  L  C  *  Q  I  K  M  M  I  I  E  N  F  T  L  F  P  K  T  K  F  H  A  Y  F  S  Q  K  L  E  G  E  D  V  F  H  Q  R  E  V  G  C  L  Q  T  H  V  Q  E  N  L  T  C  F  I  H  F  P  V  P  R  F  N  F  L  H  K  T  P  *  R  S  L  Y  R  K  M  Q  K  *  L  I  T  Q  L  T  K  L  S  C  L  *  I  L  L  I  H  Q  I  M  C  S </first_frame>
            <second_frame>  F  N  Y  L  Y  G  E  L  V  R  I  A  I  S  P  H  *  Y  S  C  R  A  C  *  S  D  *  R  F  Y  C  F  W  C  C  L  H  L  M  A  N  C  C  H  *  R  *  F  *  C  I  L  S  T  N  S  I  A  Y  A  S  R  *  R  *  *  L  S  R  I  L  L  S  F  Q  K  Q  N  F  T  H  I  S  P  R  N  *  R  A  K  M  F  S  I  R  G  R  L  D  V  Y  R  L  M  Y  R  R  I  *  L  V  S  S  I  F  P  Y  P  D  S  T  S  F  T  K  R  P  K  G  V  F  T  E  R  C  R  N  N  S  L  H  N  *  Q  S  C  L  V  C  K  S  F  S  Y  I  R  L  C  A   </second_frame>
            <third_frame>   L  T  I  Y  M  A  N  L  S  E  L  P  S  H  L  I  S  T  V  A  E  R  V  K  V  I  E  D  F  I  A  F  G  A  V  C  I  S  W  R  T  A  A  T  K  D  N  F  D  V  Y  S  P  Q  I  P  L  L  M  L  A  D  K  D  D  D  Y  R  E  F  Y  S  L  S  K  N  K  I  S  R  I  F  L  P  E  I  R  G  R  R  C  F  P  S  E  G  G  W  M  F  T  D  S  C  T  G  E  F  N  L  F  H  P  F  S  R  T  Q  I  Q  L  P  S  Q  N  A  L  K  E  S  L  Q  K  D  A  E  I  T  H  Y  T  I  D  K  A  V  L  S  V  N  P  S  H  T  S  D  Y  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41442" stop="41918"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTIYMANLSELPSHLISTVAERVKVIEDFIAFGAVCISWRTAATKDNFDVYSPQIPLLMLADKDDDYREFYSLSKNKISRIFLPEIRGRRCFPSEGGWMFTDSCTGEFNLFHPFSRTQIQLPSQNALKESLQKDAEITHYTIDKAVLSVNPSHTSDYVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="48301" PGL_stop="50945"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48301" e_stop="48514"/>
            <exon e_start="48754" e_stop="49145"/>
            <exon e_start="49227" e_stop="49243"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.962" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.965" e_score="1.000"/>
          <exon-only e_score="0.471"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="48301" e_stop="48514" e_length="214"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.962">
            <gDNA_intron_boundary i_start="48515" i_stop="48753" i_length="239"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48754" e_stop="49145" e_length="392"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.965">
            <gDNA_intron_boundary i_start="49146" i_stop="49226" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.471">
            <gDNA_exon_boundary e_start="49227" e_stop="49243" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48301" stop="48514"/>
              <exon start="48754" stop="49136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48301" stop="48514"/>
              <exon start="48754" stop="49133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48301" stop="48514"/>
              <exon start="48754" stop="49120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424673" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48303" stop="48514"/>
              <exon start="48754" stop="49145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48317" stop="48514"/>
              <exon start="48754" stop="49145"/>
              <exon start="49227" stop="49243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACATCAAGAGTGGAAGCAAAACACATCACTCCTTTATTAATCTCCAGTCATTTCGTTCTTTATTGCAACAAAGAGCACACTGTAAACCCTTTAATTTTCAACCAAACATACAAGTAGAGGAAGAGGAGATGGAGGATTTGTGGCAAAAAATGGTCTTTCCGGTTAGACGTGTTTGGGGTGCTGTTTCTGCTCGTGTCAAGCCTCGTAAAGATG : GTGCTGGATTACTGAAGCTTCAAGGCGATATACAGTCCTGTGGATATGAGGATGTACAGGTGATGTGGGAAATGCTTGGAGGGACGGATTCAGAGTTGACATCTCGGCACATCAAGCGTAAAGCGCCAACGGTTGTTTAGGCATTTTGAACGGTTAGCGCTAAACCATCCTCCTCTCCAGATCACACCATTGAGATGGTATGCTGCACTGCAGAAATAAGAGTATCTGAAGAGTGAAGAGATGTATGTTACTTGTAATTTTCAAGCCCCCAGGTAGATAGGGGGACTTTCATGACAACATTATCAGTTGTAAATATACCATCGCCCTGATGATGTATGAAAATTCGGCACTAAATAAATAAAAAGAACTATGAAGAGCTCATTTTTTTCCTA : ACACAACTCTAATAAAT</gDNA_template>
            <first_frame> H  I  K  S  G  S  K  T  H  H  S  F  I  N  L  Q  S  F  R  S  L  L  Q  Q  R  A  H  C  K  P  F  N  F  Q  P  N  I  Q  V  E  E  E  E  M  E  D  L  W  Q  K  M  V  F  P  V  R  R  V  W  G  A  V  S  A  R  V  K  P  R  K  D   : G  A  G  L  L  K  L  Q  G  D  I  Q  S  C  G  Y  E  D  V  Q  V  M  W  E  M  L  G  G  T  D  S  E  L  T  S  R  H  I  K  R  K  A  P  T  V  V  *  A  F  *  T  V  S  A  K  P  S  S  S  P  D  H  T  I  E  M  V  C  C  T  A  E  I  R  V  S  E  E  *  R  D  V  C  Y  L  *  F  S  S  P  Q  V  D  R  G  T  F  M  T  T  L  S  V  V  N  I  P  S  P  *  *  C  M  K  I  R  H  *  I  N  K  K  N  Y  E  E  L  I  F  F  L  :  T  Q  L  *  *   </first_frame>
            <second_frame>  T  S  R  V  E  A  K  H  I  T  P  L  L  I  S  S  H  F  V  L  Y  C  N  K  E  H  T  V  N  P  L  I  F  N  Q  T  Y  K  *  R  K  R  R  W  R  I  C  G  K  K  W  S  F  R  L  D  V  F  G  V  L  F  L  L  V  S  S  L  V  K  M  :  V  L  D  Y  *  S  F  K  A  I  Y  S  P  V  D  M  R  M  Y  R  *  C  G  K  C  L  E  G  R  I  Q  S  *  H  L  G  T  S  S  V  K  R  Q  R  L  F  R  H  F  E  R  L  A  L  N  H  P  P  L  Q  I  T  P  L  R  W  Y  A  A  L  Q  K  *  E  Y  L  K  S  E  E  M  Y  V  T  C  N  F  Q  A  P  R  *  I  G  G  L  S  *  Q  H  Y  Q  L  *  I  Y  H  R  P  D  D  V  *  K  F  G  T  K  *  I  K  R  T  M  K  S  S  F  F  S  * :   H  N  S  N  K  </second_frame>
            <third_frame>   H  Q  E  W  K  Q  N  T  S  L  L  Y  *  S  P  V  I  S  F  F  I  A  T  K  S  T  L  *  T  L  *  F  S  T  K  H  T  S  R  G  R  G  D  G  G  F  V  A  K  N  G  L  S  G  *  T  C  L  G  C  C  F  C  S  C  Q  A  S  *  R  W :   C  W  I  T  E  A  S  R  R  Y  T  V  L  W  I  *  G  C  T  G  D  V  G  N  A  W  R  D  G  F  R  V  D  I  S  A  H  Q  A  *  S  A  N  G  C  L  G  I  L  N  G  *  R  *  T  I  L  L  S  R  S  H  H  *  D  G  M  L  H  C  R  N  K  S  I  *  R  V  K  R  C  M  L  L  V  I  F  K  P  P  G  R  *  G  D  F  H  D  N  I  I  S  C  K  Y  T  I  A  L  M  M  Y  E  N  S  A  L  N  K  *  K  E  L  *  R  A  H  F  F  P   : N  T  T  L  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48301" stop="48514"/>
                    <exon start="48754" stop="48893"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HIKSGSKTHHSFINLQSFRSLLQQRAHCKPFNFQPNIQVEEEEMEDLWQKMVFPVRRVWGAVSARVKPRKDGAGLLKLQGDIQSCGYEDVQVMWEMLGGTDSELTSRHIKRKAPTVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="48301" e_stop="48514"/>
            <exon e_start="48754" e_stop="49134"/>
            <exon e_start="50159" e_stop="50205"/>
            <exon e_start="50918" e_stop="50945"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.962" e_score="0.925"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.995"/>
          <exon-intron don_prob="0.840" acc_prob="0.790" e_score="0.638"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="48301" e_stop="48514" e_length="214"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.962">
            <gDNA_intron_boundary i_start="48515" i_stop="48753" i_length="239"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="48754" e_stop="49134" e_length="381"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49135" i_stop="50158" i_length="1024"/>
          </intron>
          <exon e_serial="3" e_score="0.638">
            <gDNA_exon_boundary e_start="50159" e_stop="50205" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.840" acc_prob="0.790">
            <gDNA_intron_boundary i_start="50206" i_stop="50917" i_length="712"/>
          </intron>
          <exon e_serial="4" e_score="0.500">
            <gDNA_exon_boundary e_start="50918" e_stop="50945" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48301" stop="48514"/>
              <exon start="48754" stop="49133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48301" stop="48514"/>
              <exon start="48754" stop="49120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424673" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48366" stop="48514"/>
              <exon start="48754" stop="49134"/>
              <exon start="50159" stop="50205"/>
              <exon start="50918" stop="50945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720194" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACATCAAGAGTGGAAGCAAAACACATCACTCCTTTATTAATCTCCAGTCATTTCGTTCTTTATTGCAACAAAGAGCACACTGTAAACCCTTTAATTTTCAACCAAACATACAAGTAGAGGAAGAGGAGATGGAGGATTTGTGGCAAAAAATGGTCTTTCCGGTTAGACGTGTTTGGGGTGCTGTTTCTGCTCGTGTCAAGCCTCGTAAAGATG : GTGCTGGATTACTGAAGCTTCAAGGCGATATACAGTCCTGTGGATATGAGGATGTACAGGTGATGTGGGAAATGCTTGGAGGGACGGATTCAGAGTTGACATCTCGGCACATCAAGCGTAAAGCGCCAACGGTTGTTTAGGCATTTTGAACGGTTAGCGCTAAACCATCCTCCTCTCCAGATCACACCATTGAGATGGTATGCTGCACTGCAGAAATAAGAGTATCTGAAGAGTGAAGAGATGTATGTTACTTGTAATTTTCAAGCCCCCAGGTAGATAGGGGGACTTTCATGACAACATTATCAGTTGTAAATATACCATCGCCCTGATGATGTATGAAAATTCGGCACTAAATAAATAAAAAGAACTATGAAGAGCTCA : AAAATAAAAAAAGGAACCACATTAAGAGAAAAAAGCAGATAATCAAG : CAGCTAACTAATACAGAAGGCAACATAA</gDNA_template>
            <first_frame> H  I  K  S  G  S  K  T  H  H  S  F  I  N  L  Q  S  F  R  S  L  L  Q  Q  R  A  H  C  K  P  F  N  F  Q  P  N  I  Q  V  E  E  E  E  M  E  D  L  W  Q  K  M  V  F  P  V  R  R  V  W  G  A  V  S  A  R  V  K  P  R  K  D   : G  A  G  L  L  K  L  Q  G  D  I  Q  S  C  G  Y  E  D  V  Q  V  M  W  E  M  L  G  G  T  D  S  E  L  T  S  R  H  I  K  R  K  A  P  T  V  V  *  A  F  *  T  V  S  A  K  P  S  S  S  P  D  H  T  I  E  M  V  C  C  T  A  E  I  R  V  S  E  E  *  R  D  V  C  Y  L  *  F  S  S  P  Q  V  D  R  G  T  F  M  T  T  L  S  V  V  N  I  P  S  P  *  *  C  M  K  I  R  H  *  I  N  K  K  N  Y  E  E  L   : K  N  K  K  R  N  H  I  K  R  K  K  Q  I  I  K  :  Q  L  T  N  T  E  G  N  I  </first_frame>
            <second_frame>  T  S  R  V  E  A  K  H  I  T  P  L  L  I  S  S  H  F  V  L  Y  C  N  K  E  H  T  V  N  P  L  I  F  N  Q  T  Y  K  *  R  K  R  R  W  R  I  C  G  K  K  W  S  F  R  L  D  V  F  G  V  L  F  L  L  V  S  S  L  V  K  M  :  V  L  D  Y  *  S  F  K  A  I  Y  S  P  V  D  M  R  M  Y  R  *  C  G  K  C  L  E  G  R  I  Q  S  *  H  L  G  T  S  S  V  K  R  Q  R  L  F  R  H  F  E  R  L  A  L  N  H  P  P  L  Q  I  T  P  L  R  W  Y  A  A  L  Q  K  *  E  Y  L  K  S  E  E  M  Y  V  T  C  N  F  Q  A  P  R  *  I  G  G  L  S  *  Q  H  Y  Q  L  *  I  Y  H  R  P  D  D  V  *  K  F  G  T  K  *  I  K  R  T  M  K  S  S  :  K  I  K  K  G  T  T  L  R  E  K  S  R  *  S  S :   S  *  L  I  Q  K  A  T  * </second_frame>
            <third_frame>   H  Q  E  W  K  Q  N  T  S  L  L  Y  *  S  P  V  I  S  F  F  I  A  T  K  S  T  L  *  T  L  *  F  S  T  K  H  T  S  R  G  R  G  D  G  G  F  V  A  K  N  G  L  S  G  *  T  C  L  G  C  C  F  C  S  C  Q  A  S  *  R  W :   C  W  I  T  E  A  S  R  R  Y  T  V  L  W  I  *  G  C  T  G  D  V  G  N  A  W  R  D  G  F  R  V  D  I  S  A  H  Q  A  *  S  A  N  G  C  L  G  I  L  N  G  *  R  *  T  I  L  L  S  R  S  H  H  *  D  G  M  L  H  C  R  N  K  S  I  *  R  V  K  R  C  M  L  L  V  I  F  K  P  P  G  R  *  G  D  F  H  D  N  I  I  S  C  K  Y  T  I  A  L  M  M  Y  E  N  S  A  L  N  K  *  K  E  L  *  R  A  Q :   K  *  K  K  E  P  H  *  E  K  K  A  D  N  Q   : A  A  N  *  Y  R  R  Q  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48301" stop="48514"/>
                    <exon start="48754" stop="48893"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HIKSGSKTHHSFINLQSFRSLLQQRAHCKPFNFQPNIQVEEEEMEDLWQKMVFPVRRVWGAVSARVKPRKDGAGLLKLQGDIQSCGYEDVQVMWEMLGGTDSELTSRHIKRKAPTVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="59204" PGL_stop="58601"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59204" e_stop="58601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="59204" e_stop="58601" e_length="604"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59204" stop="58601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581614" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTGCTCCAGGCAACCTGGTATCATTGCAAGATTTTAGGGTTGCCATGGAACTGAACCCCCGGCAACTTGGTGAAGACTGGCCGCTGCTGCTGGAGAAACTAACACATGCAGTTGAGGAATAAGACATGTGCACTTCGCTGTCTTCAGGTCAAGCTTTTACCAGTCCCAGCTGGATCAGAGGGCACAGTTCTTCCAAGTTTTATGTAGTCACTCTGCTACAGTTCTCTTTACGGCCTTTTGATCCAGTAAACAGCTGTTGAGGTCAAACTTGTCTCTCATGGTGATAAAGGCAAGATCTAGGAATCTTTGTTTGACCAGCTGCATGGCCTTAATTTTGGCCAGAGGCATCCCATTCGTTAGCAACCACTGGAAGGGACTTGAAAAAAGAATGCCCCTGTTGGTTGCACTGTTGTATCATTAGCATAATTTTCTCTGGGTATCTGCATTCTCCTGTAATTTATGGTCAATGAGCAAATTTAGAACAGTTTTGCAGGAATAAATGTCTAGCCTAGTACTTCAGCTGAAAGGTGAAACTGAATGATGCACTAGCTGAATGTGTATGTATGTTCAACATCAAAATTGATTGGAACCTCAACATTAACA</gDNA_template>
            <first_frame> R  A  P  G  N  L  V  S  L  Q  D  F  R  V  A  M  E  L  N  P  R  Q  L  G  E  D  W  P  L  L  L  E  K  L  T  H  A  V  E  E  *  D  M  C  T  S  L  S  S  G  Q  A  F  T  S  P  S  W  I  R  G  H  S  S  S  K  F  Y  V  V  T  L  L  Q  F  S  L  R  P  F  D  P  V  N  S  C  *  G  Q  T  C  L  S  W  *  *  R  Q  D  L  G  I  F  V  *  P  A  A  W  P  *  F  W  P  E  A  S  H  S  L  A  T  T  G  R  D  L  K  K  E  C  P  C  W  L  H  C  C  I  I  S  I  I  F  S  G  Y  L  H  S  P  V  I  Y  G  Q  *  A  N  L  E  Q  F  C  R  N  K  C  L  A  *  Y  F  S  *  K  V  K  L  N  D  A  L  A  E  C  V  C  M  F  N  I  K  I  D  W  N  L  N  I  N  </first_frame>
            <second_frame>  V  L  Q  A  T  W  Y  H  C  K  I  L  G  L  P  W  N  *  T  P  G  N  L  V  K  T  G  R  C  C  W  R  N  *  H  M  Q  L  R  N  K  T  C  A  L  R  C  L  Q  V  K  L  L  P  V  P  A  G  S  E  G  T  V  L  P  S  F  M  *  S  L  C  Y  S  S  L  Y  G  L  L  I  Q  *  T  A  V  E  V  K  L  V  S  H  G  D  K  G  K  I  *  E  S  L  F  D  Q  L  H  G  L  N  F  G  Q  R  H  P  I  R  *  Q  P  L  E  G  T  *  K  K  N  A  P  V  G  C  T  V  V  S  L  A  *  F  S  L  G  I  C  I  L  L  *  F  M  V  N  E  Q  I  *  N  S  F  A  G  I  N  V  *  P  S  T  S  A  E  R  *  N  *  M  M  H  *  L  N  V  Y  V  C  S  T  S  K  L  I  G  T  S  T  L  T </second_frame>
            <third_frame>   C  S  R  Q  P  G  I  I  A  R  F  *  G  C  H  G  T  E  P  P  A  T  W  *  R  L  A  A  A  A  G  E  T  N  T  C  S  *  G  I  R  H  V  H  F  A  V  F  R  S  S  F  Y  Q  S  Q  L  D  Q  R  A  Q  F  F  Q  V  L  C  S  H  S  A  T  V  L  F  T  A  F  *  S  S  K  Q  L  L  R  S  N  L  S  L  M  V  I  K  A  R  S  R  N  L  C  L  T  S  C  M  A  L  I  L  A  R  G  I  P  F  V  S  N  H  W  K  G  L  E  K  R  M  P  L  L  V  A  L  L  Y  H  *  H  N  F  L  W  V  S  A  F  S  C  N  L  W  S  M  S  K  F  R  T  V  L  Q  E  *  M  S  S  L  V  L  Q  L  K  G  E  T  E  *  C  T  S  *  M  C  M  Y  V  Q  H  Q  N  *  L  E  P  Q  H  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0309D09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="70654" PGL_stop="70019"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70654" e_stop="70019"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="70654" e_stop="70019" e_length="636"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70654" stop="70019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423306" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAATCGGCGAATCGTCTCTAAGTTTCTGCGAGATTTGTGCAGAGAGAAAAGAAATTGATGAAATGTTCACAATTGAATCTTGCAGCCATGTTTTTTGTGCTGATTGTATTAACAAGCACGTCTCAATAAAAATCCAGGACAAAATTCACGTTGTGACATGTCCTGGTGTAGCTTGCAGGGGAATTCTCGATTTTGAGACGTGCGTTTCAATCATACCTAAAGATGTACGTGATAGTTGGGACGAATTGTTGTGTGAATCGCTAATTCTCGCCTCGCAGAGATTTTACTGTCCATATAAAGATTGTTCAGCCATGCTAGTGAACGATTCGGATGAAATAGTTAGGGAATCGGAGTGTCCTGTTTGTCGGAGATTGTTCTGCGCGCAATGTTATGTGCCGTGGCATTATGATTTTCAATGTGAAGAGTTCGGGAGAATGAATGTGGAGGAAAGAGACGGAGATGATTTAATGGTGATGGAATTAGCAAAGGCGAAACAGTGGACTAGATGTCCTTATTGCAGATTTTTCGTCGAGAAAACAGAGGGATGTTTGCATATGACTTGCAGATGTGGATCACAGTTTTGTTATAAATGTGGAATAACTTGGAGAAATAATCATGCTTGTTAATGCAATAC</gDNA_template>
            <first_frame> *  N  R  R  I  V  S  K  F  L  R  D  L  C  R  E  K  R  N  *  *  N  V  H  N  *  I  L  Q  P  C  F  L  C  *  L  Y  *  Q  A  R  L  N  K  N  P  G  Q  N  S  R  C  D  M  S  W  C  S  L  Q  G  N  S  R  F  *  D  V  R  F  N  H  T  *  R  C  T  *  *  L  G  R  I  V  V  *  I  A  N  S  R  L  A  E  I  L  L  S  I  *  R  L  F  S  H  A  S  E  R  F  G  *  N  S  *  G  I  G  V  S  C  L  S  E  I  V  L  R  A  M  L  C  A  V  A  L  *  F  S  M  *  R  V  R  E  N  E  C  G  G  K  R  R  R  *  F  N  G  D  G  I  S  K  G  E  T  V  D  *  M  S  L  L  Q  I  F  R  R  E  N  R  G  M  F  A  Y  D  L  Q  M  W  I  T  V  L  L  *  M  W  N  N  L  E  K  *  S  C  L  L  M  Q  Y </first_frame>
            <second_frame>  E  I  G  E  S  S  L  S  F  C  E  I  C  A  E  R  K  E  I  D  E  M  F  T  I  E  S  C  S  H  V  F  C  A  D  C  I  N  K  H  V  S  I  K  I  Q  D  K  I  H  V  V  T  C  P  G  V  A  C  R  G  I  L  D  F  E  T  C  V  S  I  I  P  K  D  V  R  D  S  W  D  E  L  L  C  E  S  L  I  L  A  S  Q  R  F  Y  C  P  Y  K  D  C  S  A  M  L  V  N  D  S  D  E  I  V  R  E  S  E  C  P  V  C  R  R  L  F  C  A  Q  C  Y  V  P  W  H  Y  D  F  Q  C  E  E  F  G  R  M  N  V  E  E  R  D  G  D  D  L  M  V  M  E  L  A  K  A  K  Q  W  T  R  C  P  Y  C  R  F  F  V  E  K  T  E  G  C  L  H  M  T  C  R  C  G  S  Q  F  C  Y  K  C  G  I  T  W  R  N  N  H  A  C  *  C  N   </second_frame>
            <third_frame>   K  S  A  N  R  L  *  V  S  A  R  F  V  Q  R  E  K  K  L  M  K  C  S  Q  L  N  L  A  A  M  F  F  V  L  I  V  L  T  S  T  S  Q  *  K  S  R  T  K  F  T  L  *  H  V  L  V  *  L  A  G  E  F  S  I  L  R  R  A  F  Q  S  Y  L  K  M  Y  V  I  V  G  T  N  C  C  V  N  R  *  F  S  P  R  R  D  F  T  V  H  I  K  I  V  Q  P  C  *  *  T  I  R  M  K  *  L  G  N  R  S  V  L  F  V  G  D  C  S  A  R  N  V  M  C  R  G  I  M  I  F  N  V  K  S  S  G  E  *  M  W  R  K  E  T  E  M  I  *  W  *  W  N  *  Q  R  R  N  S  G  L  D  V  L  I  A  D  F  S  S  R  K  Q  R  D  V  C  I  *  L  A  D  V  D  H  S  F  V  I  N  V  E  *  L  G  E  I  I  M  L  V  N  A  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70653" stop="70027"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIGESSLSFCEICAERKEIDEMFTIESCSHVFCADCINKHVSIKIQDKIHVVTCPGVACRGILDFETCVSIIPKDVRDSWDELLCESLILASQRFYCPYKDCSAMLVNDSDEIVRESECPVCRRLFCAQCYVPWHYDFQCEEFGRMNVEERDGDDLMVMELAKAKQWTRCPYCRFFVEKTEGCLHMTCRCGSQFCYKCGITWRNNHAC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="75105" PGL_stop="71107"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75105" e_stop="74450"/>
            <exon e_start="73998" e_stop="73531"/>
            <exon e_start="72735" e_stop="72537"/>
            <exon e_start="72125" e_stop="71912"/>
            <exon e_start="71816" e_stop="71714"/>
            <exon e_start="71438" e_stop="71107"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.946" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.962"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.955" e_score="1.000"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75105" e_stop="74450" e_length="656"/>
          </exon>
          <intron i_serial="1" don_prob="0.946" acc_prob="0.000">
            <gDNA_intron_boundary i_start="74449" i_stop="73999" i_length="451"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="73998" e_stop="73531" e_length="468"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73530" i_stop="72736" i_length="795"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72735" e_stop="72537" e_length="199"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72536" i_stop="72126" i_length="411"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72125" e_stop="71912" e_length="214"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71911" i_stop="71817" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71816" e_stop="71714" e_length="103"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.955">
            <gDNA_intron_boundary i_start="71713" i_stop="71439" i_length="275"/>
          </intron>
          <exon e_serial="6" e_score="0.958">
            <gDNA_exon_boundary e_start="71438" e_stop="71107" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75105" stop="74567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75103" stop="74567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75099" stop="74689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75098" stop="74726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75096" stop="74570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75093" stop="74570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75091" stop="74695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75090" stop="74450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75087" stop="74450"/>
              <exon start="73998" stop="73920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75087" stop="74457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75085" stop="74865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75080" stop="74450"/>
              <exon start="73998" stop="73899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75076" stop="74568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75035" stop="74726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74904" stop="74450"/>
              <exon start="73998" stop="73871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74867" stop="74450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74709" stop="74450"/>
              <exon start="73998" stop="73531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73725" stop="73531"/>
              <exon start="72735" stop="72537"/>
              <exon start="72125" stop="72034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73712" stop="73531"/>
              <exon start="72735" stop="72537"/>
              <exon start="72125" stop="71912"/>
              <exon start="71816" stop="71779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73712" stop="73531"/>
              <exon start="72735" stop="72683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73637" stop="73531"/>
              <exon start="72735" stop="72537"/>
              <exon start="72125" stop="71912"/>
              <exon start="71816" stop="71714"/>
              <exon start="71438" stop="71393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73636" stop="73531"/>
              <exon start="72735" stop="72537"/>
              <exon start="72125" stop="72028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73618" stop="73531"/>
              <exon start="72735" stop="72537"/>
              <exon start="72125" stop="71912"/>
              <exon start="71816" stop="71800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72585" stop="72537"/>
              <exon start="72125" stop="71912"/>
              <exon start="71816" stop="71714"/>
              <exon start="71438" stop="71156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72021" stop="71912"/>
              <exon start="71816" stop="71714"/>
              <exon start="71438" stop="71157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71953" stop="71912"/>
              <exon start="71816" stop="71714"/>
              <exon start="71438" stop="71291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71949" stop="71912"/>
              <exon start="71816" stop="71714"/>
              <exon start="71438" stop="71140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71948" stop="71912"/>
              <exon start="71816" stop="71714"/>
              <exon start="71438" stop="71140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71914" stop="71912"/>
              <exon start="71816" stop="71714"/>
              <exon start="71438" stop="71107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284473" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGTCTTCAACACTTTTTCTTTATTGCTCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACATTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTGAACAAGGTGAAGGATTATGCATTGGAGAATGGTGTGAAGATCGTGTGTATCGATCCGGCCCCTGACGGTTGTGTTCACTTTTCTGAGTTGATTCAGGCCGATGAGCATGATATCCCTGAG : GTGAAAATCCAACCCGATGATGTGGTGGCGTTGCCGTATTCCTCCGGAACAACGGGTTTACCTAAAGGTGTCATGTTGACACACAAGGGACTAGTCACAAGTGTGGCACAACAAGTTGATGGTGAAAATCCAAACTTGTACATCCATAGTGAGGATGTATTGCTTTGTGTGTTGCCTTTGTTTCATATATATTCCCTCAATTCCGTTTTGCTATGTGGATTAAGAGTTGGAGCAGCAATTTTGATTATGCAAAAATTTGACATTGTTCCATTCTTGGAATTAATACAAAATTACAAGGTGACCATAGGGCCATTTGTGCCACCTATTGTTTTGGCTATTGCTAAGAGTCCTATGGTTGATAATTATGATTTATCATCGGTAAGAACCGTTATGTCTGGGGCTGCACCATTAGGAAAAGAACTTGAAGACACTGTTCGAGCCAAATTTCCTAATGCTAAACTTGGTCAA : GGTTACGGAATGACAGAAGCCGGACCAGTGTTGGCTATGTGCTTGGCATTTGCTAAAGAACCCTTCGAAATTAAATCTGGAGCATGTGGGACTGTTGTTAGAAATGCTCAGATGAAAATTGTGGATCCTGATACTGGCAAATCTCTCCCTAGGAACCAATCTGGAGAGATTTGTATAAGAGGCGATCAAATTATGAAAG : GTTACCTAAATGATCCAGAGGCCACTACGGGAACAATAGACAAAGAAAGGTGGTTACATACGGGCGATATTGGTTATATTGACATCGATGATGAGCTTTTCATTGTGGATCGTTTAAAGGAATTGATAAAATACAAAGGATTTCAAGTGGCTCCTGCTGAACTTGAAGCCCTTCTCCTCAATCATCCCAATATTTCAGATGCTGCTGTTGTTTC : AATGAAAGACGAGCAAGCAGGAGAAGTTCCTGTGGCTTTTGTTGTCAGATCAAATGGCTCCACAATTACTGAAGATGAAGTCAAAGAATTCATAACAAAGCAG : GTGATATTCTATAAAAGGATAAAGAGGGTATTTTTTGTGGATGTTGTTCCTAAATCTCCATCGGGCAAAATCCTTAGAAAGGACTTGAGAGCTAAATTAGCTGCTGGATATCCAAATTAAATACTACTTCATACTTTAATGGCGATCGAATAACTATAACCAATATTTTTTTTTTTGTTATTGAAAGTTACATATTTTTGTTCTTTGAATTGTATTTGTACGTTAAACCACCTGCCTCTATACGGTTAAAATTAATTAACCAATTTGGCAAAAGGAGAAAAATGTATGTATATTTGACTGTAAGGGACTTATTTTTTTTTTTAAATGTCTCA</gDNA_template>
            <first_frame> K  S  L  Q  H  F  F  F  I  A  L  S  E  P  K  I  S  N  Y  S  T  T  F  F  F  Y  S  S  S  R  Q  V  S  K  A  K  S  K  *  Q  M  Q  R  W  R  T  K  Q  N  K  T  I  *  F  F  D  R  S  S  L  I  F  T  S  L  I  I  F  R  Y  T  R  I  V  S  K  I  F  R  N  S  N  R  A  R  V  *  S  T  G  R  I  I  K  F  I  H  T  L  M  L  S  S  I  R  E  K  L  L  L  V  F  I  N  N  L  G  S  N  K  R  I  L  L  *  S  Y  C  Q  I  H  Q  N  L  C  M  S  S  L  V  R  R  T  S  A  R  Y  R  R  W  L  I  L  C  L  R  L  L  K  L  *  S  K  L  R  L  L  M  L  R  S  L  S  L  N  R  V  M  *  T  R  *  R  I  M  H  W  R  M  V  *  R  S  C  V  S  I  R  P  L  T  V  V  F  T  F  L  S  *  F  R  P  M  S  M  I  S  L  R :   *  K  S  N  P  M  M  W  W  R  C  R  I  P  P  E  Q  R  V  Y  L  K  V  S  C  *  H  T  R  D  *  S  Q  V  W  H  N  K  L  M  V  K  I  Q  T  C  T  S  I  V  R  M  Y  C  F  V  C  C  L  C  F  I  Y  I  P  S  I  P  F  C  Y  V  D  *  E  L  E  Q  Q  F  *  L  C  K  N  L  T  L  F  H  S  W  N  *  Y  K  I  T  R  *  P  *  G  H  L  C  H  L  L  F  W  L  L  L  R  V  L  W  L  I  I  M  I  Y  H  R  *  E  P  L  C  L  G  L  H  H  *  E  K  N  L  K  T  L  F  E  P  N  F  L  M  L  N  L  V  K :   V  T  E  *  Q  K  P  D  Q  C  W  L  C  A  W  H  L  L  K  N  P  S  K  L  N  L  E  H  V  G  L  L  L  E  M  L  R  *  K  L  W  I  L  I  L  A  N  L  S  L  G  T  N  L  E  R  F  V  *  E  A  I  K  L  *  K  :  V  T  *  M  I  Q  R  P  L  R  E  Q  *  T  K  K  G  G  Y  I  R  A  I  L  V  I  L  T  S  M  M  S  F  S  L  W  I  V  *  R  N  *  *  N  T  K  D  F  K  W  L  L  L  N  L  K  P  F  S  S  I  I  P  I  F  Q  M  L  L  L  F   : Q  *  K  T  S  K  Q  E  K  F  L  W  L  L  L  S  D  Q  M  A  P  Q  L  L  K  M  K  S  K  N  S  *  Q  S  R :   *  Y  S  I  K  G  *  R  G  Y  F  L  W  M  L  F  L  N  L  H  R  A  K  S  L  E  R  T  *  E  L  N  *  L  L  D  I  Q  I  K  Y  Y  F  I  L  *  W  R  S  N  N  Y  N  Q  Y  F  F  F  C  Y  *  K  L  H  I  F  V  L  *  I  V  F  V  R  *  T  T  C  L  Y  T  V  K  I  N  *  P  I  W  Q  K  E  K  N  V  C  I  F  D  C  K  G  L  I  F  F  F  K  C  L  </first_frame>
            <second_frame>  K  V  F  N  T  F  S  L  L  L  L  A  S  P  K  F  Q  T  I  V  L  H  F  F  F  I  L  L  L  V  K  S  Q  K  L  N  Q  N  D  K  C  N  D  G  E  R  N  K  T  R  R  Y  N  F  S  I  E  A  P  *  Y  L  H  P  *  S  S  S  V  T  L  V  L  F  R  K  Y  F  G  I  Q  I  A  P  V  F  N  R  R  G  E  *  S  N  L  Y  I  R  *  C  *  A  Q  F  E  K  S  C  C  W  S  S  *  T  I  W  D  P  T  K  G  Y  Y  Y  D  L  I  A  K  F  T  R  I  C  V  C  L  P  W  C  V  V  P  R  R  D  I  D  D  G  *  S  F  V  Y  V  C  *  S  C  E  A  S  *  G  F  *  C  *  D  H  C  H  S  I  V  S  C  E  Q  G  E  G  L  C  I  G  E  W  C  E  D  R  V  Y  R  S  G  P  *  R  L  C  S  L  F  *  V  D  S  G  R  *  A  *  Y  P  *   : G  E  N  P  T  R  *  C  G  G  V  A  V  F  L  R  N  N  G  F  T  *  R  C  H  V  D  T  Q  G  T  S  H  K  C  G  T  T  S  *  W  *  K  S  K  L  V  H  P  *  *  G  C  I  A  L  C  V  A  F  V  S  Y  I  F  P  Q  F  R  F  A  M  W  I  K  S  W  S  S  N  F  D  Y  A  K  I  *  H  C  S  I  L  G  I  N  T  K  L  Q  G  D  H  R  A  I  C  A  T  Y  C  F  G  Y  C  *  E  S  Y  G  *  *  L  *  F  I  I  G  K  N  R  Y  V  W  G  C  T  I  R  K  R  T  *  R  H  C  S  S  Q  I  S  *  C  *  T  W  S   : R  L  R  N  D  R  S  R  T  S  V  G  Y  V  L  G  I  C  *  R  T  L  R  N  *  I  W  S  M  W  D  C  C  *  K  C  S  D  E  N  C  G  S  *  Y  W  Q  I  S  P  *  E  P  I  W  R  D  L  Y  K  R  R  S  N  Y  E  R :   L  P  K  *  S  R  G  H  Y  G  N  N  R  Q  R  K  V  V  T  Y  G  R  Y  W  L  Y  *  H  R  *  *  A  F  H  C  G  S  F  K  G  I  D  K  I  Q  R  I  S  S  G  S  C  *  T  *  S  P  S  P  Q  S  S  Q  Y  F  R  C  C  C  C  F  :  N  E  R  R  A  S  R  R  S  S  C  G  F  C  C  Q  I  K  W  L  H  N  Y  *  R  *  S  Q  R  I  H  N  K  A   : G  D  I  L  *  K  D  K  E  G  I  F  C  G  C  C  S  *  I  S  I  G  Q  N  P  *  K  G  L  E  S  *  I  S  C  W  I  S  K  L  N  T  T  S  Y  F  N  G  D  R  I  T  I  T  N  I  F  F  F  V  I  E  S  Y  I  F  L  F  F  E  L  Y  L  Y  V  K  P  P  A  S  I  R  L  K  L  I  N  Q  F  G  K  R  R  K  M  Y  V  Y  L  T  V  R  D  L  F  F  F  L  N  V  S </second_frame>
            <third_frame>   K  S  S  T  L  F  L  Y  C  S  *  R  A  Q  N  F  K  L  *  Y  Y  I  F  F  L  F  F  F  S  S  S  L  K  S  *  I  K  M  T  N  A  T  M  E  N  E  T  K  Q  D  D  I  I  F  R  S  K  L  P  D  I  Y  I  P  N  H  L  P  L  H  S  Y  C  F  E  N  I  S  E  F  K  S  R  P  C  L  I  D  G  A  N  N  Q  I  Y  T  Y  A  D  V  E  L  N  S  R  K  V  A  A  G  L  H  K  Q  F  G  I  Q  Q  K  D  T  I  M  I  L  L  P  N  S  P  E  F  V  Y  V  F  L  G  A  S  Y  L  G  A  I  S  T  M  A  N  P  L  F  T  S  A  E  V  V  K  Q  A  K  A  S  N  A  K  I  I  V  T  Q  S  C  H  V  N  K  V  K  D  Y  A  L  E  N  G  V  K  I  V  C  I  D  P  A  P  D  G  C  V  H  F  S  E  L  I  Q  A  D  E  H  D  I  P  E  :  V  K  I  Q  P  D  D  V  V  A  L  P  Y  S  S  G  T  T  G  L  P  K  G  V  M  L  T  H  K  G  L  V  T  S  V  A  Q  Q  V  D  G  E  N  P  N  L  Y  I  H  S  E  D  V  L  L  C  V  L  P  L  F  H  I  Y  S  L  N  S  V  L  L  C  G  L  R  V  G  A  A  I  L  I  M  Q  K  F  D  I  V  P  F  L  E  L  I  Q  N  Y  K  V  T  I  G  P  F  V  P  P  I  V  L  A  I  A  K  S  P  M  V  D  N  Y  D  L  S  S  V  R  T  V  M  S  G  A  A  P  L  G  K  E  L  E  D  T  V  R  A  K  F  P  N  A  K  L  G  Q  :  G  Y  G  M  T  E  A  G  P  V  L  A  M  C  L  A  F  A  K  E  P  F  E  I  K  S  G  A  C  G  T  V  V  R  N  A  Q  M  K  I  V  D  P  D  T  G  K  S  L  P  R  N  Q  S  G  E  I  C  I  R  G  D  Q  I  M  K   : G  Y  L  N  D  P  E  A  T  T  G  T  I  D  K  E  R  W  L  H  T  G  D  I  G  Y  I  D  I  D  D  E  L  F  I  V  D  R  L  K  E  L  I  K  Y  K  G  F  Q  V  A  P  A  E  L  E  A  L  L  L  N  H  P  N  I  S  D  A  A  V  V  S :   M  K  D  E  Q  A  G  E  V  P  V  A  F  V  V  R  S  N  G  S  T  I  T  E  D  E  V  K  E  F  I  T  K  Q  :  V  I  F  Y  K  R  I  K  R  V  F  F  V  D  V  V  P  K  S  P  S  G  K  I  L  R  K  D  L  R  A  K  L  A  A  G  Y  P  N  *  I  L  L  H  T  L  M  A  I  E  *  L  *  P  I  F  F  F  L  L  L  K  V  T  Y  F  C  S  L  N  C  I  C  T  L  N  H  L  P  L  Y  G  *  N  *  L  T  N  L  A  K  G  E  K  C  M  Y  I  *  L  *  G  T  Y  F  F  F  *  M  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74998" stop="74450"/>
                    <exon start="73998" stop="73531"/>
                    <exon start="72735" stop="72537"/>
                    <exon start="72125" stop="71912"/>
                    <exon start="71816" stop="71714"/>
                    <exon start="71438" stop="71319"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1650</number_coding_nucleotides>
                  <number_encoded_amino_acids>550</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKMTNATMENETKQDDIIFRSKLPDIYIPNHLPLHSYCFENISEFKSRPCLIDGANNQIYTYADVELNSRKVAAGLHKQFGIQQKDTIMILLPNSPEFVYVFLGASYLGAISTMANPLFTSAEVVKQAKASNAKIIVTQSCHVNKVKDYALENGVKIVCIDPAPDGCVHFSELIQADEHDIPEVKIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYIHSEDVLLCVLPLFHIYSLNSVLLCGLRVGAAILIMQKFDIVPFLELIQNYKVTIGPFVPPIVLAIAKSPMVDNYDLSSVRTVMSGAAPLGKELEDTVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFEIKSGACGTVVRNAQMKIVDPDTGKSLPRNQSGEICIRGDQIMKGYLNDPEATTGTIDKERWLHTGDIGYIDIDDELFIVDRLKELIKYKGFQVAPAELEALLLNHPNISDAAVVSMKDEQAGEVPVAFVVRSNGSTITEDEVKEFITKQVIFYKRIKRVFFVDVVPKSPSGKILRKDLRAKLAAGYPN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71343" stop="71107"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISCWISKLNTTSYFNGDRITITNIFFFVIESYIFLFFELYLYVKPPASIRLKLINQFGKRRKMYVYLTVRDLFFFLNVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="87368" PGL_stop="82089"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87368" e_stop="87262"/>
            <exon e_start="86364" e_stop="86298"/>
            <exon e_start="83244" e_stop="83157"/>
            <exon e_start="82744" e_stop="82614"/>
            <exon e_start="82509" e_stop="82089"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.724" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.916" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87368" e_stop="87262" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.724">
            <gDNA_intron_boundary i_start="87261" i_stop="86365" i_length="897"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86364" e_stop="86298" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.994">
            <gDNA_intron_boundary i_start="86297" i_stop="83245" i_length="3053"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83244" e_stop="83157" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="83156" i_stop="82745" i_length="412"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82744" e_stop="82614" e_length="131"/>
          </exon>
          <intron i_serial="4" don_prob="0.951" acc_prob="0.916">
            <gDNA_intron_boundary i_start="82613" i_stop="82510" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="82509" e_stop="82089" e_length="421"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87368" stop="87262"/>
              <exon start="86364" stop="86298"/>
              <exon start="83244" stop="83157"/>
              <exon start="82744" stop="82614"/>
              <exon start="82509" stop="82339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87330" stop="87262"/>
              <exon start="86364" stop="86298"/>
              <exon start="83244" stop="83157"/>
              <exon start="82744" stop="82614"/>
              <exon start="82509" stop="82380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87323" stop="87262"/>
              <exon start="86364" stop="86298"/>
              <exon start="83244" stop="83157"/>
              <exon start="82744" stop="82614"/>
              <exon start="82509" stop="82089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87322" stop="87262"/>
              <exon start="86364" stop="86298"/>
              <exon start="83244" stop="83157"/>
              <exon start="82744" stop="82614"/>
              <exon start="82509" stop="82153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86345" stop="86298"/>
              <exon start="83244" stop="83157"/>
              <exon start="82744" stop="82614"/>
              <exon start="82509" stop="82481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86331" stop="86298"/>
              <exon start="83244" stop="83157"/>
              <exon start="82744" stop="82614"/>
              <exon start="82509" stop="82089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589211" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGCTTTTTTTTTTCCTTCTCCTTCCAGAGCTCAAAGTGATTCTTCTTTCTTCGTGTGCATCCCAACCTTCTCCGGCTACCCTAAAGTCACCGTTGCCTGAACGCAG : GTTATTCAAATTTTGTTAGAGTGCTGCTACAACAGTTTGGATACTTATATTTCTGATTTCCGTAATG : GCTGCGAGAATCCTTGCAAACATAATTATTTTGGGTTCTGGAATAATGGCAAGGGCCTTTGCCCAGGCATATCGCCAAGCTCTCACAA : ATGCATCAAAAAATGGTGTTGCTCAAGAAGCAGTACAAAACATTAGAAGAGCAAGCAAAACTATGACAGAGGTGGAGGCTAGGCAAGTCCTTGGGGTTGCAGAGCATTCATCATGGGAAGACGTGTTGCAG : AAATATGACAACTTGTTTGAGAGTAATGCTAAAAATGGAAGTTTTTATCTACAATCAAAAGTTCATAGAGCGAAGGAATGCTTAGAATCTCTTTACCGAAGTAAAGCAGAGGGCCCAAATTAGTTCTTTGAAGTTCCTGCAGCATTGCAGCTAGAGACATTCTGGGCTCTTGTAAGGAGTATCTTCAGTAGAGGGTAATTGCTTTCTACCATCAGATGGTCTCCTGCAATGTTACATACATATTCGATCCTCAATTTTGGCCCGTTGGAGAGAAGCACTTAAATTAATCATTCGTGTAGTTTGCATCACTCCGCCTTTTCTGTCATTTTGCTTAGTAGCACGCTTCATTATTATTTCATGCTTTTGTATGGTTACCACATAACTTGATGGAAGAGGGGCGTGAAATTGAAAAATTTGGAAT</gDNA_template>
            <first_frame> R  L  F  F  F  L  L  L  P  E  L  K  V  I  L  L  S  S  C  A  S  Q  P  S  P  A  T  L  K  S  P  L  P  E  R  R :   L  F  K  F  C  *  S  A  A  T  T  V  W  I  L  I  F  L  I  S  V  M  :  A  A  R  I  L  A  N  I  I  I  L  G  S  G  I  M  A  R  A  F  A  Q  A  Y  R  Q  A  L  T   : N  A  S  K  N  G  V  A  Q  E  A  V  Q  N  I  R  R  A  S  K  T  M  T  E  V  E  A  R  Q  V  L  G  V  A  E  H  S  S  W  E  D  V  L  Q  :  K  Y  D  N  L  F  E  S  N  A  K  N  G  S  F  Y  L  Q  S  K  V  H  R  A  K  E  C  L  E  S  L  Y  R  S  K  A  E  G  P  N  *  F  F  E  V  P  A  A  L  Q  L  E  T  F  W  A  L  V  R  S  I  F  S  R  G  *  L  L  S  T  I  R  W  S  P  A  M  L  H  T  Y  S  I  L  N  F  G  P  L  E  R  S  T  *  I  N  H  S  C  S  L  H  H  S  A  F  S  V  I  L  L  S  S  T  L  H  Y  Y  F  M  L  L  Y  G  Y  H  I  T  *  W  K  R  G  V  K  L  K  N  L  E  </first_frame>
            <second_frame>  G  F  F  F  S  F  S  F  Q  S  S  K  *  F  F  F  L  R  V  H  P  N  L  L  R  L  P  *  S  H  R  C  L  N  A   : G  Y  S  N  F  V  R  V  L  L  Q  Q  F  G  Y  L  Y  F  *  F  P  *  W :   L  R  E  S  L  Q  T  *  L  F  W  V  L  E  *  W  Q  G  P  L  P  R  H  I  A  K  L  S  Q  :  M  H  Q  K  M  V  L  L  K  K  Q  Y  K  T  L  E  E  Q  A  K  L  *  Q  R  W  R  L  G  K  S  L  G  L  Q  S  I  H  H  G  K  T  C  C  R :   N  M  T  T  C  L  R  V  M  L  K  M  E  V  F  I  Y  N  Q  K  F  I  E  R  R  N  A  *  N  L  F  T  E  V  K  Q  R  A  Q  I  S  S  L  K  F  L  Q  H  C  S  *  R  H  S  G  L  L  *  G  V  S  S  V  E  G  N  C  F  L  P  S  D  G  L  L  Q  C  Y  I  H  I  R  S  S  I  L  A  R  W  R  E  A  L  K  L  I  I  R  V  V  C  I  T  P  P  F  L  S  F  C  L  V  A  R  F  I  I  I  S  C  F  C  M  V  T  T  *  L  D  G  R  G  A  *  N  *  K  I  W  N </second_frame>
            <third_frame>   A  F  F  F  P  S  P  S  R  A  Q  S  D  S  S  F  F  V  C  I  P  T  F  S  G  Y  P  K  V  T  V  A  *  T  Q  :  V  I  Q  I  L  L  E  C  C  Y  N  S  L  D  T  Y  I  S  D  F  R  N   : G  C  E  N  P  C  K  H  N  Y  F  G  F  W  N  N  G  K  G  L  C  P  G  I  S  P  S  S  H  K :   C  I  K  K  W  C  C  S  R  S  S  T  K  H  *  K  S  K  Q  N  Y  D  R  G  G  G  *  A  S  P  W  G  C  R  A  F  I  M  G  R  R  V  A   : E  I  *  Q  L  V  *  E  *  C  *  K  W  K  F  L  S  T  I  K  S  S  *  S  E  G  M  L  R  I  S  L  P  K  *  S  R  G  P  K  L  V  L  *  S  S  C  S  I  A  A  R  D  I  L  G  S  C  K  E  Y  L  Q  *  R  V  I  A  F  Y  H  Q  M  V  S  C  N  V  T  Y  I  F  D  P  Q  F  W  P  V  G  E  K  H  L  N  *  S  F  V  *  F  A  S  L  R  L  F  C  H  F  A  *  *  H  A  S  L  L  F  H  A  F  V  W  L  P  H  N  L  M  E  E  G  R  E  I  E  K  F  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86345" stop="86298"/>
                    <exon start="83244" stop="83157"/>
                    <exon start="82744" stop="82614"/>
                    <exon start="82509" stop="82387"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAATTVWILIFLISVMAARILANIIILGSGIMARAFAQAYRQALTNASKNGVAQEAVQNIRRASKTMTEVEARQVLGVAEHSSWEDVLQKYDNLFESNAKNGSFYLQSKVHRAKECLESLYRSKAEGPN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82334" stop="82128"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVSSVEGNCFLPSDGLLQCYIHIRSSILARWREALKLIIRVVCITPPFLSFCLVARFIIISCFCMVTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87329" e_stop="87262"/>
            <exon e_start="87121" e_stop="87116"/>
            <exon e_start="86364" e_stop="86298"/>
            <exon e_start="83244" e_stop="83157"/>
            <exon e_start="82744" e_stop="82614"/>
            <exon e_start="82509" e_stop="82089"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.804" e_score="0.912"/>
          <exon-intron don_prob="0.000" acc_prob="0.724" e_score="0.667"/>
          <exon-intron don_prob="0.988" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.989"/>
          <exon-intron don_prob="0.951" acc_prob="0.916" e_score="0.985"/>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="87329" e_stop="87262" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.804">
            <gDNA_intron_boundary i_start="87261" i_stop="87122" i_length="140"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="87121" e_stop="87116" e_length="6"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.724">
            <gDNA_intron_boundary i_start="87115" i_stop="86365" i_length="751"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86364" e_stop="86298" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.994">
            <gDNA_intron_boundary i_start="86297" i_stop="83245" i_length="3053"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="83244" e_stop="83157" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="83156" i_stop="82745" i_length="412"/>
          </intron>
          <exon e_serial="5" e_score="0.985">
            <gDNA_exon_boundary e_start="82744" e_stop="82614" e_length="131"/>
          </exon>
          <intron i_serial="5" don_prob="0.951" acc_prob="0.916">
            <gDNA_intron_boundary i_start="82613" i_stop="82510" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="0.914">
            <gDNA_exon_boundary e_start="82509" e_stop="82089" e_length="421"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87329" stop="87262"/>
              <exon start="87121" stop="87116"/>
              <exon start="86364" stop="86298"/>
              <exon start="83244" stop="83157"/>
              <exon start="82744" stop="82614"/>
              <exon start="82509" stop="82230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86345" stop="86298"/>
              <exon start="83244" stop="83157"/>
              <exon start="82744" stop="82614"/>
              <exon start="82509" stop="82481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86331" stop="86298"/>
              <exon start="83244" stop="83157"/>
              <exon start="82744" stop="82614"/>
              <exon start="82509" stop="82089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589211" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCTTCTTTCTTCGTGTGCATCCCAACCTTCTCCGGCTACCCTAAAGTCACCGTTGCCTGAACGCAG : CTGTAT : GTTATTCAAATTTTGTTAGAGTGCTGCTACAACAGTTTGGATACTTATATTTCTGATTTCCGTAATG : GCTGCGAGAATCCTTGCAAACATAATTATTTTGGGTTCTGGAATAATGGCAAGGGCCTTTGCCCAGGCATATCGCCAAGCTCTCACAA : ATGCATCAAAAAATGGTGTTGCTCAAGAAGCAGTACAAAACATTAGAAGAGCAAGCAAAACTATGACAGAGGTGGAGGCTAGGCAAGTCCTTGGGGTTGCAGAGCATTCATCATGGGAAGACGTGTTGCAG : AAATATGACAACTTGTTTGAGAGTAATGCTAAAAATGGAAGTTTTTATCTACAATCAAAAGTTCATAGAGCGAAGGAATGCTTAGAATCTCTTTACCGAAGTAAAGCAGAGGGCCCAAATTAGTTCTTTGAAGTTCCTGCAGCATTGCAGCTAGAGACATTCTGGGCTCTTGTAAGGAGTATCTTCAGTAGAGGGTAATTGCTTTCTACCATCAGATGGTCTCCTGCAATGTTACATACATATTCGATCCTCAATTTTGGCCCGTTGGAGAGAAGCACTTAAATTAATCATTCGTGTAGTTTGCATCACTCCGCCTTTTCTGTCATTTTGCTTAGTAGCACGCTTCATTATTATTTCATGCTTTTGTATGGTTACCACATAACTTGATGGAAGAGGGGCGTGAAATTGAAAAATTTGGAAT</gDNA_template>
            <first_frame> I  L  L  S  S  C  A  S  Q  P  S  P  A  T  L  K  S  P  L  P  E  R  S :   C  M :   L  F  K  F  C  *  S  A  A  T  T  V  W  I  L  I  F  L  I  S  V  M  :  A  A  R  I  L  A  N  I  I  I  L  G  S  G  I  M  A  R  A  F  A  Q  A  Y  R  Q  A  L  T   : N  A  S  K  N  G  V  A  Q  E  A  V  Q  N  I  R  R  A  S  K  T  M  T  E  V  E  A  R  Q  V  L  G  V  A  E  H  S  S  W  E  D  V  L  Q  :  K  Y  D  N  L  F  E  S  N  A  K  N  G  S  F  Y  L  Q  S  K  V  H  R  A  K  E  C  L  E  S  L  Y  R  S  K  A  E  G  P  N  *  F  F  E  V  P  A  A  L  Q  L  E  T  F  W  A  L  V  R  S  I  F  S  R  G  *  L  L  S  T  I  R  W  S  P  A  M  L  H  T  Y  S  I  L  N  F  G  P  L  E  R  S  T  *  I  N  H  S  C  S  L  H  H  S  A  F  S  V  I  L  L  S  S  T  L  H  Y  Y  F  M  L  L  Y  G  Y  H  I  T  *  W  K  R  G  V  K  L  K  N  L  E  </first_frame>
            <second_frame>  F  F  F  L  R  V  H  P  N  L  L  R  L  P  *  S  H  R  C  L  N  A   : A  V   : C  Y  S  N  F  V  R  V  L  L  Q  Q  F  G  Y  L  Y  F  *  F  P  *  W :   L  R  E  S  L  Q  T  *  L  F  W  V  L  E  *  W  Q  G  P  L  P  R  H  I  A  K  L  S  Q  :  M  H  Q  K  M  V  L  L  K  K  Q  Y  K  T  L  E  E  Q  A  K  L  *  Q  R  W  R  L  G  K  S  L  G  L  Q  S  I  H  H  G  K  T  C  C  R :   N  M  T  T  C  L  R  V  M  L  K  M  E  V  F  I  Y  N  Q  K  F  I  E  R  R  N  A  *  N  L  F  T  E  V  K  Q  R  A  Q  I  S  S  L  K  F  L  Q  H  C  S  *  R  H  S  G  L  L  *  G  V  S  S  V  E  G  N  C  F  L  P  S  D  G  L  L  Q  C  Y  I  H  I  R  S  S  I  L  A  R  W  R  E  A  L  K  L  I  I  R  V  V  C  I  T  P  P  F  L  S  F  C  L  V  A  R  F  I  I  I  S  C  F  C  M  V  T  T  *  L  D  G  R  G  A  *  N  *  K  I  W  N </second_frame>
            <third_frame>   S  S  F  F  V  C  I  P  T  F  S  G  Y  P  K  V  T  V  A  *  T  Q  :  L  Y  :  V  I  Q  I  L  L  E  C  C  Y  N  S  L  D  T  Y  I  S  D  F  R  N   : G  C  E  N  P  C  K  H  N  Y  F  G  F  W  N  N  G  K  G  L  C  P  G  I  S  P  S  S  H  K :   C  I  K  K  W  C  C  S  R  S  S  T  K  H  *  K  S  K  Q  N  Y  D  R  G  G  G  *  A  S  P  W  G  C  R  A  F  I  M  G  R  R  V  A   : E  I  *  Q  L  V  *  E  *  C  *  K  W  K  F  L  S  T  I  K  S  S  *  S  E  G  M  L  R  I  S  L  P  K  *  S  R  G  P  K  L  V  L  *  S  S  C  S  I  A  A  R  D  I  L  G  S  C  K  E  Y  L  Q  *  R  V  I  A  F  Y  H  Q  M  V  S  C  N  V  T  Y  I  F  D  P  Q  F  W  P  V  G  E  K  H  L  N  *  S  F  V  *  F  A  S  L  R  L  F  C  H  F  A  *  *  H  A  S  L  L  F  H  A  F  V  W  L  P  H  N  L  M  E  E  G  R  E  I  E  K  F  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86345" stop="86298"/>
                    <exon start="83244" stop="83157"/>
                    <exon start="82744" stop="82614"/>
                    <exon start="82509" stop="82387"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAATTVWILIFLISVMAARILANIIILGSGIMARAFAQAYRQALTNASKNGVAQEAVQNIRRASKTMTEVEARQVLGVAEHSSWEDVLQKYDNLFESNAKNGSFYLQSKVHRAKECLESLYRSKAEGPN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82334" stop="82128"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVSSVEGNCFLPSDGLLQCYIHIRSSILARWREALKLIIRVVCITPPFLSFCLVARFIIISCFCMVTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="89167" PGL_stop="88333"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89167" e_stop="88811"/>
            <exon e_start="88645" e_stop="88333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.061" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89167" e_stop="88811" e_length="357"/>
          </exon>
          <intron i_serial="1" don_prob="0.061" acc_prob="0.000">
            <gDNA_intron_boundary i_start="88810" i_stop="88646" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="88645" e_stop="88333" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89167" stop="88811"/>
              <exon start="88645" stop="88333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89167" stop="88811"/>
              <exon start="88645" stop="88333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89166" stop="88811"/>
              <exon start="88645" stop="88399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGAATAGTGTATTGGACAACAAAGTCGAATCAATAGCTTTGCATTTGCTATTTTCCAGATCTGTACGCTTCAAAATCACGCATAGGTACCAACAAAAGAGTGTAATTCACCATCACCGACATCATCCTCTTCCAGAAACAAACCCTCTGTAAAAGTTGCATGCAAAAATATCAACACAATCCATACAACAATTGACACCAACACATTCAACCAAACATGAATACAATCATCCCTTAGTTGACTCGAAAGTAGCTGAGATTTCGGTTGAACCTATATGCGAAATCGCTGACAGAAATAGGTATAGGAAGACGAATGGATCTATAACTCTCTCCATGGACGACGAGGAGCATACGAG : AAGGAGAAGTCAACGGTGGCGGTGCTCGTCGGCCAGATCGAGGTACGGCAGCGGGTTATGTTGATCGTTTTGTGATGGTTGAAGGAGAAGGAAAGCTTCTCGAGTGCCATGTGCTATATACATCCTTCATCTTCTTCATTATTTTACTGATGAAGATCACCCAGAAATAAAGGAGAGAAAGAAATACAGGGGAAAGTCATAACGACAAAGCTACAAAAGTGAAACCACATAATCAAACCTTTACATGCGATAACAATTGTACAAAAAAATAAAGGAAATAACCCAAATTTGAAAATTCAACCATCTAGTGAAA</gDNA_template>
            <first_frame> A  E  *  C  I  G  Q  Q  S  R  I  N  S  F  A  F  A  I  F  Q  I  C  T  L  Q  N  H  A  *  V  P  T  K  E  C  N  S  P  S  P  T  S  S  S  S  R  N  K  P  S  V  K  V  A  C  K  N  I  N  T  I  H  T  T  I  D  T  N  T  F  N  Q  T  *  I  Q  S  S  L  S  *  L  E  S  S  *  D  F  G  *  T  Y  M  R  N  R  *  Q  K  *  V  *  E  D  E  W  I  Y  N  S  L  H  G  R  R  G  A  Y  E  :  K  E  K  S  T  V  A  V  L  V  G  Q  I  E  V  R  Q  R  V  M  L  I  V  L  *  W  L  K  E  K  E  S  F  S  S  A  M  C  Y  I  H  P  S  S  S  S  L  F  Y  *  *  R  S  P  R  N  K  G  E  K  E  I  Q  G  K  V  I  T  T  K  L  Q  K  *  N  H  I  I  K  P  L  H  A  I  T  I  V  Q  K  N  K  G  N  N  P  N  L  K  I  Q  P  S  S  E  </first_frame>
            <second_frame>  Q  N  S  V  L  D  N  K  V  E  S  I  A  L  H  L  L  F  S  R  S  V  R  F  K  I  T  H  R  Y  Q  Q  K  S  V  I  H  H  H  R  H  H  P  L  P  E  T  N  P  L  *  K  L  H  A  K  I  S  T  Q  S  I  Q  Q  L  T  P  T  H  S  T  K  H  E  Y  N  H  P  L  V  D  S  K  V  A  E  I  S  V  E  P  I  C  E  I  A  D  R  N  R  Y  R  K  T  N  G  S  I  T  L  S  M  D  D  E  E  H  T  R :   R  R  S  Q  R  W  R  C  S  S  A  R  S  R  Y  G  S  G  L  C  *  S  F  C  D  G  *  R  R  R  K  A  S  R  V  P  C  A  I  Y  I  L  H  L  L  H  Y  F  T  D  E  D  H  P  E  I  K  E  R  K  K  Y  R  G  K  S  *  R  Q  S  Y  K  S  E  T  T  *  S  N  L  Y  M  R  *  Q  L  Y  K  K  I  K  E  I  T  Q  I  *  K  F  N  H  L  V  K </second_frame>
            <third_frame>   R  I  V  Y  W  T  T  K  S  N  Q  *  L  C  I  C  Y  F  P  D  L  Y  A  S  K  S  R  I  G  T  N  K  R  V  *  F  T  I  T  D  I  I  L  F  Q  K  Q  T  L  C  K  S  C  M  Q  K  Y  Q  H  N  P  Y  N  N  *  H  Q  H  I  Q  P  N  M  N  T  I  I  P  *  L  T  R  K  *  L  R  F  R  L  N  L  Y  A  K  S  L  T  E  I  G  I  G  R  R  M  D  L  *  L  S  P  W  T  T  R  S  I  R   : E  G  E  V  N  G  G  G  A  R  R  P  D  R  G  T  A  A  G  Y  V  D  R  F  V  M  V  E  G  E  G  K  L  L  E  C  H  V  L  Y  T  S  F  I  F  F  I  I  L  L  M  K  I  T  Q  K  *  R  R  E  R  N  T  G  E  S  H  N  D  K  A  T  K  V  K  P  H  N  Q  T  F  T  C  D  N  N  C  T  K  K  *  R  K  *  P  K  F  E  N  S  T  I  *  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89013" stop="88811"/>
                    <exon start="88645" stop="88582"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLHAKISTQSIQQLTPTHSTKHEYNHPLVDSKVAEISVEPICEIADRNRYRKTNGSITLSMDDEEHTRRRSQRWRCSSARSRYGSGLC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88841" stop="88811"/>
                    <exon start="88645" stop="88476"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSPWTTRSIREGEVNGGGARRPDRGTAAGYVDRFVMVEGEGKLLECHVLYTSFIFFIILLMKITQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="90009" PGL_stop="90174"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90009" e_stop="90174"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="90009" e_stop="90174" e_length="166"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90009" stop="90174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317704" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTAGAATCCCGAAAATAAGCATGGGCCTCTTTCAGACTCTCCGGCCCAATCATGGTCTCCGGGAATGGAGATGCAACACCAGTAGTGGCAATCTTGAAATTCTCTTCAATGGAGAAATTGCAGTACTAAAATGAACTTGTGCGAATGAAATAGAAGGGAATTTA</gDNA_template>
            <first_frame> L  *  N  P  E  N  K  H  G  P  L  S  D  S  P  A  Q  S  W  S  P  G  M  E  M  Q  H  Q  *  W  Q  S  *  N  S  L  Q  W  R  N  C  S  T  K  M  N  L  C  E  *  N  R  R  E  F  </first_frame>
            <second_frame>  F  R  I  P  K  I  S  M  G  L  F  Q  T  L  R  P  N  H  G  L  R  E  W  R  C  N  T  S  S  G  N  L  E  I  L  F  N  G  E  I  A  V  L  K  *  T  C  A  N  E  I  E  G  N  L </second_frame>
            <third_frame>   L  E  S  R  K  *  A  W  A  S  F  R  L  S  G  P  I  M  V  S  G  N  G  D  A  T  P  V  V  A  I  L  K  F  S  S  M  E  K  L  Q  Y  *  N  E  L  V  R  M  K  *  K  G  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0309D09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="93957" PGL_stop="93365"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93957" e_stop="93899"/>
            <exon e_start="93742" e_stop="93365"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93957" e_stop="93899" e_length="59"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.975">
            <gDNA_intron_boundary i_start="93898" i_stop="93743" i_length="156"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="93742" e_stop="93365" e_length="378"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93957" stop="93899"/>
              <exon start="93742" stop="93365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245884" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTTTGCACATTATGGAAGATTTTGTATCCTTTCATAGACAACCACACCAAGAAAAAG : ATCATGTTTGTGGAAAACAAACGGCTGACAGCAACCTTACTTCAAGATATTGATGAAAGCCAGCTTCCGGAGACTTACGGAGGCAAAATGCAATTAGTTCCTATACAGGACGCCTAGGCAAGTAATTGCCCTACAAGCTTCAACTGTATCAAGTTGACAGTGCTTTATTTTTAATAGCTTTGAGGAAAAACATTAAATAGCAAATATACATCTATATCCATTACTAAACATTCAGCTTTTACATGGAGTAGAAAATAAATGACATATTTTCCACCTGATCTGCTAGTTTGATGTTCTTCTTGATGAATCCAGCTTCCATTGCTATCTATCATTTTGATATGACAAACTGGATGACGTTCAATCTTGATTCTGCAACAA</gDNA_template>
            <first_frame> Y  F  A  H  Y  G  R  F  C  I  L  S  *  T  T  T  P  R  K  R :   S  C  L  W  K  T  N  G  *  Q  Q  P  Y  F  K  I  L  M  K  A  S  F  R  R  L  T  E  A  K  C  N  *  F  L  Y  R  T  P  R  Q  V  I  A  L  Q  A  S  T  V  S  S  *  Q  C  F  I  F  N  S  F  E  E  K  H  *  I  A  N  I  H  L  Y  P  L  L  N  I  Q  L  L  H  G  V  E  N  K  *  H  I  F  H  L  I  C  *  F  D  V  L  L  D  E  S  S  F  H  C  Y  L  S  F  *  Y  D  K  L  D  D  V  Q  S  *  F  C  N   </first_frame>
            <second_frame>  I  L  H  I  M  E  D  F  V  S  F  H  R  Q  P  H  Q  E  K   : D  H  V  C  G  K  Q  T  A  D  S  N  L  T  S  R  Y  *  *  K  P  A  S  G  D  L  R  R  Q  N  A  I  S  S  Y  T  G  R  L  G  K  *  L  P  Y  K  L  Q  L  Y  Q  V  D  S  A  L  F  L  I  A  L  R  K  N  I  K  *  Q  I  Y  I  Y  I  H  Y  *  T  F  S  F  Y  M  E  *  K  I  N  D  I  F  S  T  *  S  A  S  L  M  F  F  L  M  N  P  A  S  I  A  I  Y  H  F  D  M  T  N  W  M  T  F  N  L  D  S  A  T  </second_frame>
            <third_frame>   F  C  T  L  W  K  I  L  Y  P  F  I  D  N  H  T  K  K  K  :  I  M  F  V  E  N  K  R  L  T  A  T  L  L  Q  D  I  D  E  S  Q  L  P  E  T  Y  G  G  K  M  Q  L  V  P  I  Q  D  A  *  A  S  N  C  P  T  S  F  N  C  I  K  L  T  V  L  Y  F  *  *  L  *  G  K  T  L  N  S  K  Y  T  S  I  S  I  T  K  H  S  A  F  T  W  S  R  K  *  M  T  Y  F  P  P  D  L  L  V  *  C  S  S  *  *  I  Q  L  P  L  L  S  I  I  L  I  *  Q  T  G  *  R  S  I  L  I  L  Q  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0309D09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="95436" PGL_stop="94451"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95436" e_stop="94962"/>
            <exon e_start="94854" e_stop="94490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95436" e_stop="94962" e_length="475"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94961" i_stop="94855" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="94854" e_stop="94490" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95436" stop="94962"/>
              <exon start="94854" stop="94490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95436" stop="94962"/>
              <exon start="94854" stop="94701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95336" stop="94962"/>
              <exon start="94854" stop="94634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95336" stop="94962"/>
              <exon start="94854" stop="94684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95336" stop="94962"/>
              <exon start="94854" stop="94756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTTCAAAGATTTGATTTTTCTCACTTCCTCCATCTTCCTCTTATATATTTTCTTTCTTCAACTAGGCTGAAAATTCCACAAACAAGAGGAAAATTAGCTATTCTTGATAGTGGGGTAGAAGCTTCTGCTTTCCGTTGCTATTTCTCACACTATTTATAGGTGCAAGGAAGACTCTGATGGAGGGGAAAGCAGAGGTAGTAACAATGAAGCCAAATACTGATGAGCTTCTTTCTAAACAAATAATGAAGCAGGATGCAGCAGCAACAGAAAAAGAAGAAATTCAAATGCGATGTGACGACGTAATGAAGCCAAATAATGATAAACTTCTCTCTAAACAAAGAATGAAGCAGGAAGCAGTAGCAACAGAAAAAGAAGGAATTCAAATGCAATGCGACGACACAATTACAGATCAAGAGATGAATAAAATTGAACTAATGAGGGCTCTTGTTGAAAAACAAGATCCTTCTTCCAAG : GAAATAGACGACTATGCCTTGAGAAGGTTTCTTCGAGCTCGTGATCTAGACATAGAGAAATCTGCAGCAATGTTCTTGAAATACCTTAAGTGGAGACAAAGTTTTGTACCAAAAGGGTCCATTTTGGTGAGTGAGATACCAAACGAGATTGCACAGAACAAGATGTTCATGCAAGGTGTAGACAAACAGGGTTGTCCTATTGCTGTAGTTTTTGGTGGCAGGCATATTCAAAACAAATTAGGAGGTGTTGAAGAGTTCAAACGTATGACTTCCTTTTTTCCTTTTCACCACCTAATTTCACATAGCCTACTGCATCACGGTCAGTGAAACTGGCTTTGGAATCAGTCAATTTCTCACATCCAAGT</gDNA_template>
            <first_frame> S  F  K  D  L  I  F  L  T  S  S  I  F  L  L  Y  I  F  F  L  Q  L  G  *  K  F  H  K  Q  E  E  N  *  L  F  L  I  V  G  *  K  L  L  L  S  V  A  I  S  H  T  I  Y  R  C  K  E  D  S  D  G  G  E  S  R  G  S  N  N  E  A  K  Y  *  *  A  S  F  *  T  N  N  E  A  G  C  S  S  N  R  K  R  R  N  S  N  A  M  *  R  R  N  E  A  K  *  *  *  T  S  L  *  T  K  N  E  A  G  S  S  S  N  R  K  R  R  N  S  N  A  M  R  R  H  N  Y  R  S  R  D  E  *  N  *  T  N  E  G  S  C  *  K  T  R  S  F  F  Q   : G  N  R  R  L  C  L  E  K  V  S  S  S  S  *  S  R  H  R  E  I  C  S  N  V  L  E  I  P  *  V  E  T  K  F  C  T  K  R  V  H  F  G  E  *  D  T  K  R  D  C  T  E  Q  D  V  H  A  R  C  R  Q  T  G  L  S  Y  C  C  S  F  W  W  Q  A  Y  S  K  Q  I  R  R  C  *  R  V  Q  T  Y  D  F  L  F  S  F  S  P  P  N  F  T  *  P  T  A  S  R  S  V  K  L  A  L  E  S  V  N  F  S  H  P  S </first_frame>
            <second_frame>  L  S  K  I  *  F  F  S  L  P  P  S  S  S  Y  I  F  S  F  F  N  *  A  E  N  S  T  N  K  R  K  I  S  Y  S  *  *  W  G  R  S  F  C  F  P  L  L  F  L  T  L  F  I  G  A  R  K  T  L  M  E  G  K  A  E  V  V  T  M  K  P  N  T  D  E  L  L  S  K  Q  I  M  K  Q  D  A  A  A  T  E  K  E  E  I  Q  M  R  C  D  D  V  M  K  P  N  N  D  K  L  L  S  K  Q  R  M  K  Q  E  A  V  A  T  E  K  E  G  I  Q  M  Q  C  D  D  T  I  T  D  Q  E  M  N  K  I  E  L  M  R  A  L  V  E  K  Q  D  P  S  S  K  :  E  I  D  D  Y  A  L  R  R  F  L  R  A  R  D  L  D  I  E  K  S  A  A  M  F  L  K  Y  L  K  W  R  Q  S  F  V  P  K  G  S  I  L  V  S  E  I  P  N  E  I  A  Q  N  K  M  F  M  Q  G  V  D  K  Q  G  C  P  I  A  V  V  F  G  G  R  H  I  Q  N  K  L  G  G  V  E  E  F  K  R  M  T  S  F  F  P  F  H  H  L  I  S  H  S  L  L  H  H  G  Q  *  N  W  L  W  N  Q  S  I  S  H  I  Q   </second_frame>
            <third_frame>   F  Q  R  F  D  F  S  H  F  L  H  L  P  L  I  Y  F  L  S  S  T  R  L  K  I  P  Q  T  R  G  K  L  A  I  L  D  S  G  V  E  A  S  A  F  R  C  Y  F  S  H  Y  L  *  V  Q  G  R  L  *  W  R  G  K  Q  R  *  *  Q  *  S  Q  I  L  M  S  F  F  L  N  K  *  *  S  R  M  Q  Q  Q  Q  K  K  K  K  F  K  C  D  V  T  T  *  *  S  Q  I  M  I  N  F  S  L  N  K  E  *  S  R  K  Q  *  Q  Q  K  K  K  E  F  K  C  N  A  T  T  Q  L  Q  I  K  R  *  I  K  L  N  *  *  G  L  L  L  K  N  K  I  L  L  P  R :   K  *  T  T  M  P  *  E  G  F  F  E  L  V  I  *  T  *  R  N  L  Q  Q  C  S  *  N  T  L  S  G  D  K  V  L  Y  Q  K  G  P  F  W  *  V  R  Y  Q  T  R  L  H  R  T  R  C  S  C  K  V  *  T  N  R  V  V  L  L  L  *  F  L  V  A  G  I  F  K  T  N  *  E  V  L  K  S  S  N  V  *  L  P  F  F  L  F  T  T  *  F  H  I  A  Y  C  I  T  V  S  E  T  G  F  G  I  S  Q  F  L  T  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95324" stop="94962"/>
                    <exon start="94854" stop="94528"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WGRSFCFPLLFLTLFIGARKTLMEGKAEVVTMKPNTDELLSKQIMKQDAAATEKEEIQMRCDDVMKPNNDKLLSKQRMKQEAVATEKEGIQMQCDDTITDQEMNKIELMRALVEKQDPSSKEIDDYALRRFLRARDLDIEKSAAMFLKYLKWRQSFVPKGSILVSEIPNEIAQNKMFMQGVDKQGCPIAVVFGGRHIQNKLGGVEEFKRMTSFFPFHHLISHSLLHHGQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="95436" e_stop="94962"/>
            <exon e_start="94854" e_stop="94593"/>
            <exon e_start="94471" e_stop="94451"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.437" e_score="0.989"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95436" e_stop="94962" e_length="475"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94961" i_stop="94855" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="94854" e_stop="94593" e_length="262"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.437">
            <gDNA_intron_boundary i_start="94592" i_stop="94472" i_length="121"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94471" e_stop="94451" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95436" stop="94962"/>
              <exon start="94854" stop="94701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95343" stop="94962"/>
              <exon start="94854" stop="94593"/>
              <exon start="94471" stop="94451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95336" stop="94962"/>
              <exon start="94854" stop="94634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95336" stop="94962"/>
              <exon start="94854" stop="94684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95336" stop="94962"/>
              <exon start="94854" stop="94756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTTCAAAGATTTGATTTTTCTCACTTCCTCCATCTTCCTCTTATATATTTTCTTTCTTCAACTAGGCTGAAAATTCCACAAACAAGAGGAAAATTAGCTATTCTTGATAGTGGGGTAGAAGCTTCTGCTTTCCGTTGCTATTTCTCACACTATTTATAGGTGCAAGGAAGACTCTGATGGAGGGGAAAGCAGAGGTAGTAACAATGAAGCCAAATACTGATGAGCTTCTTTCTAAACAAATAATGAAGCAGGATGCAGCAGCAACAGAAAAAGAAGAAATTCAAATGCGATGTGACGACGTAATGAAGCCAAATAATGATAAACTTCTCTCTAAACAAAGAATGAAGCAGGAAGCAGTAGCAACAGAAAAAGAAGGAATTCAAATGCAATGCGACGACACAATTACAGATCAAGAGATGAATAAAATTGAACTAATGAGGGCTCTTGTTGAAAAACAAGATCCTTCTTCCAAG : GAAATAGACGACTATGCCTTGAGAAGGTTTCTTCGAGCTCGTGATCTAGACATAGAGAAATCTGCAGCAATGTTCTTGAAATACCTTAAGTGGAGACAAAGTTTTGTACCAAAAGGGTCCATTTTGGTGAGTGAGATACCAAACGAGATTGCACAGAACAAGATGTTCATGCAAGGTGTAGACAAACAGGGTTGTCCTATTGCTGTAGTTTTTGGTGGCAGGCATATTCAAAACAAATTAGGAGGTGTTGAAGAGTTCAAAC : GTTTTATAGTCTTTGCTCTGG</gDNA_template>
            <first_frame> S  F  K  D  L  I  F  L  T  S  S  I  F  L  L  Y  I  F  F  L  Q  L  G  *  K  F  H  K  Q  E  E  N  *  L  F  L  I  V  G  *  K  L  L  L  S  V  A  I  S  H  T  I  Y  R  C  K  E  D  S  D  G  G  E  S  R  G  S  N  N  E  A  K  Y  *  *  A  S  F  *  T  N  N  E  A  G  C  S  S  N  R  K  R  R  N  S  N  A  M  *  R  R  N  E  A  K  *  *  *  T  S  L  *  T  K  N  E  A  G  S  S  S  N  R  K  R  R  N  S  N  A  M  R  R  H  N  Y  R  S  R  D  E  *  N  *  T  N  E  G  S  C  *  K  T  R  S  F  F  Q   : G  N  R  R  L  C  L  E  K  V  S  S  S  S  *  S  R  H  R  E  I  C  S  N  V  L  E  I  P  *  V  E  T  K  F  C  T  K  R  V  H  F  G  E  *  D  T  K  R  D  C  T  E  Q  D  V  H  A  R  C  R  Q  T  G  L  S  Y  C  C  S  F  W  W  Q  A  Y  S  K  Q  I  R  R  C  *  R  V  Q  T :   F  Y  S  L  C  S   </first_frame>
            <second_frame>  L  S  K  I  *  F  F  S  L  P  P  S  S  S  Y  I  F  S  F  F  N  *  A  E  N  S  T  N  K  R  K  I  S  Y  S  *  *  W  G  R  S  F  C  F  P  L  L  F  L  T  L  F  I  G  A  R  K  T  L  M  E  G  K  A  E  V  V  T  M  K  P  N  T  D  E  L  L  S  K  Q  I  M  K  Q  D  A  A  A  T  E  K  E  E  I  Q  M  R  C  D  D  V  M  K  P  N  N  D  K  L  L  S  K  Q  R  M  K  Q  E  A  V  A  T  E  K  E  G  I  Q  M  Q  C  D  D  T  I  T  D  Q  E  M  N  K  I  E  L  M  R  A  L  V  E  K  Q  D  P  S  S  K  :  E  I  D  D  Y  A  L  R  R  F  L  R  A  R  D  L  D  I  E  K  S  A  A  M  F  L  K  Y  L  K  W  R  Q  S  F  V  P  K  G  S  I  L  V  S  E  I  P  N  E  I  A  Q  N  K  M  F  M  Q  G  V  D  K  Q  G  C  P  I  A  V  V  F  G  G  R  H  I  Q  N  K  L  G  G  V  E  E  F  K   : R  F  I  V  F  A  L  </second_frame>
            <third_frame>   F  Q  R  F  D  F  S  H  F  L  H  L  P  L  I  Y  F  L  S  S  T  R  L  K  I  P  Q  T  R  G  K  L  A  I  L  D  S  G  V  E  A  S  A  F  R  C  Y  F  S  H  Y  L  *  V  Q  G  R  L  *  W  R  G  K  Q  R  *  *  Q  *  S  Q  I  L  M  S  F  F  L  N  K  *  *  S  R  M  Q  Q  Q  Q  K  K  K  K  F  K  C  D  V  T  T  *  *  S  Q  I  M  I  N  F  S  L  N  K  E  *  S  R  K  Q  *  Q  Q  K  K  K  E  F  K  C  N  A  T  T  Q  L  Q  I  K  R  *  I  K  L  N  *  *  G  L  L  L  K  N  K  I  L  L  P  R :   K  *  T  T  M  P  *  E  G  F  F  E  L  V  I  *  T  *  R  N  L  Q  Q  C  S  *  N  T  L  S  G  D  K  V  L  Y  Q  K  G  P  F  W  *  V  R  Y  Q  T  R  L  H  R  T  R  C  S  C  K  V  *  T  N  R  V  V  L  L  L  *  F  L  V  A  G  I  F  K  T  N  *  E  V  L  K  S  S  N  :  V  L  *  S  L  L  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95324" stop="94962"/>
                    <exon start="94854" stop="94593"/>
                    <exon start="94471" stop="94452"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>645</number_coding_nucleotides>
                  <number_encoded_amino_acids>215</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WGRSFCFPLLFLTLFIGARKTLMEGKAEVVTMKPNTDELLSKQIMKQDAAATEKEEIQMRCDDVMKPNNDKLLSKQRMKQEAVATEKEGIQMQCDDTITDQEMNKIELMRALVEKQDPSSKEIDDYALRRFLRARDLDIEKSAAMFLKYLKWRQSFVPKGSILVSEIPNEIAQNKMFMQGVDKQGCPIAVVFGGRHIQNKLGGVEEFKRFIVFAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="97237" PGL_stop="96219"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97237" e_stop="96880"/>
            <exon e_start="96779" e_stop="96664"/>
            <exon e_start="96271" e_stop="96219"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.000" e_score="0.997"/>
          <exon-intron don_prob="0.940" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="97237" e_stop="96880" e_length="358"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96879" i_stop="96780" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96779" e_stop="96664" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.940" acc_prob="0.984">
            <gDNA_intron_boundary i_start="96663" i_stop="96272" i_length="392"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96271" e_stop="96219" e_length="53"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97237" stop="96880"/>
              <exon start="96779" stop="96664"/>
              <exon start="96271" stop="96219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302096" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTTAGAAGGAACAAAATTCGTTTACCAAGACCATTGAACAAGCTCACAGGTTTCAATGCCTTCTGGTACTCCCATCACCTCTTTGTCATTGTCTATTCTCTCCTCATAGTCCATGGTATCGAGCTTTACTTAACCAAAGAATGGTACAAGAAGACGGTCAGTCTATACATTTGTGGAATCAACAATAATTTCTTAATGAGTTTAACTTTTATACACTCACAACTATTAAATCAACTTACAATGCGAGCGTATACTGGCAGACATGGATGTACTTGGCTATACCAATCATACTTTATTCTGGTGAAAGATTACTAAGGGCATTCAGGTCAAGCGTCAAGGATGTTAAAATATTAAAA : GTGGCTATGTATCCTGGAAATGTGTTGACACTTCAAATGTCAAAGCCACAGGGCTTCAATTATAAAAGTGGGCAATACATGTTTGTCAACTGTGCTGCAGTTTCACCATTTGAATG : GCACCCATTTTCTATAACTTCAGCGCCTGGAGATGAGTATCTAAGTGTACATA</gDNA_template>
            <first_frame> D  L  E  G  T  K  F  V  Y  Q  D  H  *  T  S  S  Q  V  S  M  P  S  G  T  P  I  T  S  L  S  L  S  I  L  S  S  *  S  M  V  S  S  F  T  *  P  K  N  G  T  R  R  R  S  V  Y  T  F  V  E  S  T  I  I  S  *  *  V  *  L  L  Y  T  H  N  Y  *  I  N  L  Q  C  E  R  I  L  A  D  M  D  V  L  G  Y  T  N  H  T  L  F  W  *  K  I  T  K  G  I  Q  V  K  R  Q  G  C  *  N  I  K   : S  G  Y  V  S  W  K  C  V  D  T  S  N  V  K  A  T  G  L  Q  L  *  K  W  A  I  H  V  C  Q  L  C  C  S  F  T  I  *  M  :  A  P  I  F  Y  N  F  S  A  W  R  *  V  S  K  C  T   </first_frame>
            <second_frame>  I  *  K  E  Q  N  S  F  T  K  T  I  E  Q  A  H  R  F  Q  C  L  L  V  L  P  S  P  L  C  H  C  L  F  S  P  H  S  P  W  Y  R  A  L  L  N  Q  R  M  V  Q  E  D  G  Q  S  I  H  L  W  N  Q  Q  *  F  L  N  E  F  N  F  Y  T  L  T  T  I  K  S  T  Y  N  A  S  V  Y  W  Q  T  W  M  Y  L  A  I  P  I  I  L  Y  S  G  E  R  L  L  R  A  F  R  S  S  V  K  D  V  K  I  L  K  :  V  A  M  Y  P  G  N  V  L  T  L  Q  M  S  K  P  Q  G  F  N  Y  K  S  G  Q  Y  M  F  V  N  C  A  A  V  S  P  F  E  W :   H  P  F  S  I  T  S  A  P  G  D  E  Y  L  S  V  H  </second_frame>
            <third_frame>   F  R  R  N  K  I  R  L  P  R  P  L  N  K  L  T  G  F  N  A  F  W  Y  S  H  H  L  F  V  I  V  Y  S  L  L  I  V  H  G  I  E  L  Y  L  T  K  E  W  Y  K  K  T  V  S  L  Y  I  C  G  I  N  N  N  F  L  M  S  L  T  F  I  H  S  Q  L  L  N  Q  L  T  M  R  A  Y  T  G  R  H  G  C  T  W  L  Y  Q  S  Y  F  I  L  V  K  D  Y  *  G  H  S  G  Q  A  S  R  M  L  K  Y  *  K :   W  L  C  I  L  E  M  C  *  H  F  K  C  Q  S  H  R  A  S  I  I  K  V  G  N  T  C  L  S  T  V  L  Q  F  H  H  L  N   : G  T  H  F  L  *  L  Q  R  L  E  M  S  I  *  V  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97047" stop="96880"/>
                    <exon start="96779" stop="96664"/>
                    <exon start="96271" stop="96220"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLNEFNFYTLTTIKSTYNASVYWQTWMYLAIPIILYSGERLLRAFRSSVKDVKILKVAMYPGNVLTLQMSKPQGFNYKSGQYMFVNCAAVSPFEWHPFSITSAPGDEYLSVH</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97235" stop="96921"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRRNKIRLPRPLNKLTGFNAFWYSHHLFVIVYSLLIVHGIELYLTKEWYKKTVSLYICGINNNFLMSLTFIHSQLLNQLTMRAYTGRHGCTWLYQSYFILVKDY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="105665" PGL_stop="108532"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105665" e_stop="106021"/>
            <exon e_start="106491" e_stop="106545"/>
            <exon e_start="106652" e_stop="106777"/>
            <exon e_start="106860" e_stop="106954"/>
            <exon e_start="107143" e_stop="107227"/>
            <exon e_start="107329" e_stop="107388"/>
            <exon e_start="107665" e_stop="107720"/>
            <exon e_start="107840" e_stop="107945"/>
            <exon e_start="108070" e_stop="108138"/>
            <exon e_start="108237" e_stop="108532"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.980"/>
          <exon-intron don_prob="0.989" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.729" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.084" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="105665" e_stop="106021" e_length="357"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106491" e_stop="106545" e_length="55"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.978">
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          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106652" e_stop="106777" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106860" e_stop="106954" e_length="95"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.729">
            <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="107143" e_stop="107227" e_length="85"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.993">
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          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="107329" e_stop="107388" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.084" acc_prob="0.997">
            <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="107665" e_stop="107720" e_length="56"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.989">
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          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="107840" e_stop="107945" e_length="106"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.995">
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          <exon e_serial="9" e_score="1.000">
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          </exon>
          <intron i_serial="9" don_prob="0.947" acc_prob="0.987">
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          </intron>
          <exon e_serial="10" e_score="0.997">
            <gDNA_exon_boundary e_start="108237" e_stop="108532" e_length="296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341417" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365803" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="105725" stop="106021"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105726" stop="106021"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738065" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738988" strand="+"/>
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            <referenceDNA id="SGN-E264252" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E264873" strand="+"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704090" strand="+"/>
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            <referenceDNA id="SGN-E346979" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
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          <PGS_line>
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              <exon start="107143" stop="107227"/>
              <exon start="107329" stop="107388"/>
              <exon start="107665" stop="107708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105904" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106652" stop="106777"/>
              <exon start="106860" stop="106954"/>
              <exon start="107143" stop="107148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105907" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106652" stop="106777"/>
              <exon start="106860" stop="106954"/>
              <exon start="107143" stop="107202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105968" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106652" stop="106777"/>
              <exon start="106860" stop="106938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106491" stop="106545"/>
              <exon start="106652" stop="106777"/>
              <exon start="106860" stop="106954"/>
              <exon start="107143" stop="107227"/>
              <exon start="107329" stop="107388"/>
              <exon start="107665" stop="107720"/>
              <exon start="107840" stop="107945"/>
              <exon start="108070" stop="108138"/>
              <exon start="108237" stop="108426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106680" stop="106777"/>
              <exon start="106860" stop="106954"/>
              <exon start="107143" stop="107227"/>
              <exon start="107329" stop="107388"/>
              <exon start="107665" stop="107720"/>
              <exon start="107840" stop="107945"/>
              <exon start="108070" stop="108130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106713" stop="106777"/>
              <exon start="106860" stop="106954"/>
              <exon start="107143" stop="107227"/>
              <exon start="107329" stop="107388"/>
              <exon start="107665" stop="107720"/>
              <exon start="107840" stop="107945"/>
              <exon start="108070" stop="108138"/>
              <exon start="108237" stop="108525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106719" stop="106777"/>
              <exon start="106860" stop="106954"/>
              <exon start="107143" stop="107227"/>
              <exon start="107329" stop="107388"/>
              <exon start="107665" stop="107720"/>
              <exon start="107840" stop="107945"/>
              <exon start="108070" stop="108138"/>
              <exon start="108237" stop="108525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106725" stop="106777"/>
              <exon start="106860" stop="106954"/>
              <exon start="107143" stop="107227"/>
              <exon start="107329" stop="107388"/>
              <exon start="107665" stop="107720"/>
              <exon start="107840" stop="107945"/>
              <exon start="108070" stop="108138"/>
              <exon start="108237" stop="108463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106872" stop="106954"/>
              <exon start="107143" stop="107227"/>
              <exon start="107329" stop="107388"/>
              <exon start="107665" stop="107720"/>
              <exon start="107840" stop="107945"/>
              <exon start="108070" stop="108138"/>
              <exon start="108237" stop="108532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106872" stop="106954"/>
              <exon start="107143" stop="107227"/>
              <exon start="107329" stop="107388"/>
              <exon start="107665" stop="107720"/>
              <exon start="107840" stop="107945"/>
              <exon start="108070" stop="108136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106915" stop="106954"/>
              <exon start="107143" stop="107227"/>
              <exon start="107329" stop="107388"/>
              <exon start="107665" stop="107720"/>
              <exon start="107840" stop="107945"/>
              <exon start="108070" stop="108138"/>
              <exon start="108237" stop="108523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106923" stop="106954"/>
              <exon start="107143" stop="107227"/>
              <exon start="107329" stop="107388"/>
              <exon start="107665" stop="107720"/>
              <exon start="107840" stop="107945"/>
              <exon start="108070" stop="108138"/>
              <exon start="108237" stop="108523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370212" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTGTTGATATATAAATACTTATTATAAAGTCAATAATAAGTGGCTTCTCATTTTAATGGCGGATATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG : ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG : GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG : ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC : TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG : GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAG : ATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG : TTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAG : GGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTCAACAG : GTTCTTGCGAATAGCCTGCGTTATTTCTTGAGGAGACCAACAACAGAGGATGCAAGTTTTTAATACAATGCTGAAAAGTGAGAAATTGTCAACAGGGTTAACCAAGTACTTTCAATTTTCAAGATAATGAAGCTTGCTGGTTTTAGCAGCACCGATCCATTCCAAGGTGTAAACAGCGAAAATATGCTTGAAACTCAGAATCATAGCTTCAATACTGCTGTAACAATGTAGATTGGTACCATTTATACATTAATGATATAAGTTTTCAGAACAGGAAAACAAAAACAATTATCAGT</gDNA_template>
            <first_frame> S  C  *  Y  I  N  T  Y  Y  K  V  N  N  K  W  L  L  I  L  M  A  D  I  T  R  T  N  N  L  I  H  F  L  A  P  I  A  S  S  S  *  I  S  F  A  L  L  Y  I  L  R  *  E  *  E  *  S  F  Y  F  L  L  H  L  L  L  S  *  Y  Y  *  T  E  N  G  C  G  Y  G  F  L  W  N  P  H  *  F  K  T  Y  R  E  A  T  R  F  N  S  R  L  L  *  W  V  F  S  F  E  S  S  P  K  T  A  R  Y  T  Q  E  :  I  S  F  I  W  E  Y  N  C  S  E  S  I  G  Y  S  C  G   : G  W  K  F  T  R  D  C  C  S  S  N  T  Q  S  C  N  *  F  G  F  R  S  R  S  N  D  C  R  G  Y  L  W  G  S  P  W  G  T  S  R  H   : D  E  C  I  K  K  P  W  A  E  C  C  Q  G  *  C  L  S  *  F  I  W  E  A  *  H  I  R  H  H  K  S  :  F  Y  G  *  E  G  R  *  S  R  A  A  *  S  N  S  F  D  D  H  Q  *  Y  D  G  I  P  P   : G  I  *  L  Q  I  S  Y  G  R  S  F  R  C  F  S  T  I  S  E   : D  *  R  G  H  S  D  P  Y  P  C  L  *  R  C  S  *  K  K  :  F  T  L  C  R  D  S  R  Q  T  W  T  D  S  *  S  C  Q  D  H  Y  *  H  K  C  *  C  *  I  R  R  V  R  Y  *   : G  F  A  C  *  G  E  I  S  C  Q  L  Q  G  Q  S  V  D  Q  A  P  S  T   : G  S  C  E  *  P  A  L  F  L  E  E  T  N  N  R  G  C  K  F  L  I  Q  C  *  K  V  R  N  C  Q  Q  G  *  P  S  T  F  N  F  Q  D  N  E  A  C  W  F  *  Q  H  R  S  I  P  R  C  K  Q  R  K  Y  A  *  N  S  E  S  *  L  Q  Y  C  C  N  N  V  D  W  Y  H  L  Y  I  N  D  I  S  F  Q  N  R  K  T  K  T  I  I  S </first_frame>
            <second_frame>  V  V  D  I  *  I  L  I  I  K  S  I  I  S  G  F  S  F  *  W  R  I  L  L  E  Q  T  I  *  F  I  F  *  P  L  *  L  H  L  L  K  Y  L  L  L  Y  Y  I  S  *  D  K  N  R  N  K  V  S  T  F  Y  C  I  F  F  F  L  D  I  I  E  L  K  M  A  V  A  M  V  S  C  G  I  P  T  S  L  K  L  I  E  K  Q  P  V  S  I  P  G  F  F  N  G  S  L  A  L  N  P  V  Q  K  L  H  V  T  P  K  R :   L  A  L  S  G  S  T  I  V  L  K  A  S  A  T  A  V  E  :  D  G  S  S  Q  E  T  A  A  V  P  T  P  K  V  V  I  D  L  D  S  D  P  E  A  T  I  V  E  V  T  F  G  D  R  L  G  A  L  L  D  T  :  M  N  A  L  K  N  L  G  L  N  V  V  K  A  N  V  C  L  D  S  S  G  K  H  N  T  F  A  I  T  K  A :   S  T  G  R  K  V  D  D  P  E  L  L  E  A  I  R  L  T  I  I  N  N  M  M  E  Y  H  P  :  E  S  S  S  R  L  A  M  G  E  A  F  G  V  F  Q  P  Y  Q  K  :  I  D  V  D  I  A  T  H  I  H  V  Y  D  D  A  P  E  R  S :   L  L  C  V  E  T  A  D  R  P  G  L  I  V  D  L  V  K  T  I  T  D  I  N  V  D  V  E  S  G  E  F  D  T  E  :  G  L  L  A  K  A  K  F  H  V  N  Y  K  G  K  A  L  I  K  P  L  Q  Q  :  V  L  A  N  S  L  R  Y  F  L  R  R  P  T  T  E  D  A  S  F  *  Y  N  A  E  K  *  E  I  V  N  R  V  N  Q  V  L  S  I  F  K  I  M  K  L  A  G  F  S  S  T  D  P  F  Q  G  V  N  S  E  N  M  L  E  T  Q  N  H  S  F  N  T  A  V  T  M  *  I  G  T  I  Y  T  L  M  I  *  V  F  R  T  G  K  Q  K  Q  L  S   </second_frame>
            <third_frame>   L  L  I  Y  K  Y  L  L  *  S  Q  *  *  V  A  S  H  F  N  G  G  Y  Y  *  N  K  Q  S  D  S  F  S  S  P  Y  S  F  I  F  L  N  I  F  C  S  T  I  Y  L  K  I  R  I  G  I  K  F  L  L  F  I  A  S  S  S  F  L  I  L  L  N  *  K  W  L  W  L  W  F  L  V  E  S  P  L  V  *  N  L  *  R  S  N  P  F  Q  F  Q  A  S  L  M  G  L  *  L  *  I  Q  S  K  N  C  T  L  H  P  R   : D  *  L  Y  L  G  V  Q  L  F  *  K  H  R  L  Q  L  W  R :   M  E  V  H  K  R  L  L  Q  F  Q  H  P  K  L  *  L  I  W  I  Q  I  Q  K  Q  R  L  *  R  L  P  L  G  I  A  L  G  H  F  S  T  R :   *  M  H  *  K  T  L  G  *  M  L  S  R  L  M  S  V  L  I  H  L  G  S  I  T  H  S  P  S  Q  K   : L  L  R  V  G  R  S  M  I  Q  S  C  L  K  Q  F  V  *  R  S  S  I  I  *  W  N  T  T  R :   N  L  A  P  D  *  L  W  E  K  L  S  V  F  F  N  H  I  R  R :   L  T  W  T  *  R  P  I  S  M  F  M  T  M  L  L  K  E   : V  Y  S  V  *  R  Q  Q  T  D  L  D  *  *  L  I  L  S  R  P  L  L  T  *  M  L  M  L  N  Q  E  S  S  I  L  R :   V  C  L  L  R  R  N  F  M  S  T  T  R  A  K  R  *  S  S  P  F  N  R :   F  L  R  I  A  C  V  I  S  *  G  D  Q  Q  Q  R  M  Q  V  F  N  T  M  L  K  S  E  K  L  S  T  G  L  T  K  Y  F  Q  F  S  R  *  *  S  L  L  V  L  A  A  P  I  H  S  K  V  *  T  A  K  I  C  L  K  L  R  I  I  A  S  I  L  L  *  Q  C  R  L  V  P  F  I  H  *  *  Y  K  F  S  E  Q  E  N  K  N  N  Y  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105816" stop="106021"/>
                    <exon start="106491" stop="106545"/>
                    <exon start="106652" stop="106777"/>
                    <exon start="106860" stop="106954"/>
                    <exon start="107143" stop="107227"/>
                    <exon start="107329" stop="107388"/>
                    <exon start="107665" stop="107720"/>
                    <exon start="107840" stop="107945"/>
                    <exon start="108070" stop="108138"/>
                    <exon start="108237" stop="108299"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>918</number_coding_nucleotides>
                  <number_encoded_amino_acids>306</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKNRNKVSTFYCIFFFLDIIELKMAVAMVSCGIPTSLKLIEKQPVSIPGFFNGSLALNPVQKLHVTPKRLALSGSTIVLKASATAVEDGSSQETAAVPTPKVVIDLDSDPEATIVEVTFGDRLGALLDTMNALKNLGLNVVKANVCLDSSGKHNTFAITKASTGRKVDDPELLEAIRLTIINNMMEYHPESSSRLAMGEAFGVFQPYQKIDVDIATHIHVYDDAPERSLLCVETADRPGLIVDLVKTITDINVDVESGEFDTEGLLAKAKFHVNYKGKALIKPLQQVLANSLRYFLRRPTTEDASF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="105665" e_stop="106021"/>
            <exon e_start="106491" e_stop="106545"/>
            <exon e_start="106652" e_stop="106777"/>
            <exon e_start="106860" e_stop="107114"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.980"/>
          <exon-intron don_prob="0.989" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="105665" e_stop="106021" e_length="357"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106491" e_stop="106545" e_length="55"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.978">
            <gDNA_intron_boundary i_start="106546" i_stop="106651" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106652" e_stop="106777" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106860" e_stop="107114" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105665" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106652" stop="106777"/>
              <exon start="106860" stop="106954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105724" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106652" stop="106713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105725" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106652" stop="106679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105726" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106652" stop="106777"/>
              <exon start="106860" stop="107016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105726" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106652" stop="106777"/>
              <exon start="106860" stop="106935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105735" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106652" stop="106777"/>
              <exon start="106860" stop="106951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105735" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106652" stop="106777"/>
              <exon start="106860" stop="106949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105738" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106652" stop="106777"/>
              <exon start="106860" stop="106938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105738" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106652" stop="106732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105739" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106652" stop="106777"/>
              <exon start="106860" stop="106876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105742" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106652" stop="106777"/>
              <exon start="106860" stop="106954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105745" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106652" stop="106777"/>
              <exon start="106860" stop="106886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105745" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106652" stop="106764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105755" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106652" stop="106767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105756" stop="106021"/>
              <exon start="106491" stop="106523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281421" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105757" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106652" stop="106777"/>
              <exon start="106860" stop="107011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105757" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106652" stop="106777"/>
              <exon start="106860" stop="106951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105774" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106652" stop="106777"/>
              <exon start="106860" stop="106939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105839" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106652" stop="106777"/>
              <exon start="106860" stop="107114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105883" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106652" stop="106777"/>
              <exon start="106860" stop="106951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105968" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106652" stop="106777"/>
              <exon start="106860" stop="106938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330566" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTGTTGATATATAAATACTTATTATAAAGTCAATAATAAGTGGCTTCTCATTTTAATGGCGGATATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG : ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG : GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG : ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGA</gDNA_template>
            <first_frame> S  C  *  Y  I  N  T  Y  Y  K  V  N  N  K  W  L  L  I  L  M  A  D  I  T  R  T  N  N  L  I  H  F  L  A  P  I  A  S  S  S  *  I  S  F  A  L  L  Y  I  L  R  *  E  *  E  *  S  F  Y  F  L  L  H  L  L  L  S  *  Y  Y  *  T  E  N  G  C  G  Y  G  F  L  W  N  P  H  *  F  K  T  Y  R  E  A  T  R  F  N  S  R  L  L  *  W  V  F  S  F  E  S  S  P  K  T  A  R  Y  T  Q  E  :  I  S  F  I  W  E  Y  N  C  S  E  S  I  G  Y  S  C  G   : G  W  K  F  T  R  D  C  C  S  S  N  T  Q  S  C  N  *  F  G  F  R  S  R  S  N  D  C  R  G  Y  L  W  G  S  P  W  G  T  S  R  H   : D  E  C  I  K  K  P  W  A  E  C  C  Q  G  *  C  L  S  *  F  I  W  E  A  *  H  I  R  H  H  K  S  V  S  S  C  C  W  F  L  C  A  A  R  *  F  F  C  F  S  Y  T  *  A  L  Y  V  I  S  H  Q  I  Y  E  N  T  Y  E  *  I  F  C  Y  A  S  N  N  I  S  S  L  I  E  I  L  </first_frame>
            <second_frame>  V  V  D  I  *  I  L  I  I  K  S  I  I  S  G  F  S  F  *  W  R  I  L  L  E  Q  T  I  *  F  I  F  *  P  L  *  L  H  L  L  K  Y  L  L  L  Y  Y  I  S  *  D  K  N  R  N  K  V  S  T  F  Y  C  I  F  F  F  L  D  I  I  E  L  K  M  A  V  A  M  V  S  C  G  I  P  T  S  L  K  L  I  E  K  Q  P  V  S  I  P  G  F  F  N  G  S  L  A  L  N  P  V  Q  K  L  H  V  T  P  K  R :   L  A  L  S  G  S  T  I  V  L  K  A  S  A  T  A  V  E  :  D  G  S  S  Q  E  T  A  A  V  P  T  P  K  V  V  I  D  L  D  S  D  P  E  A  T  I  V  E  V  T  F  G  D  R  L  G  A  L  L  D  T  :  M  N  A  L  K  N  L  G  L  N  V  V  K  A  N  V  C  L  D  S  S  G  K  H  N  T  F  A  I  T  K  A  *  V  H  V  V  G  S  F  V  L  L  G  D  F  S  V  S  L  I  L  E  L  C  M  L  S  V  T  R  Y  M  K  T  L  T  N  E  S  F  V  M  R  L  T  T  L  V  P  *  L  K  F  * </second_frame>
            <third_frame>   L  L  I  Y  K  Y  L  L  *  S  Q  *  *  V  A  S  H  F  N  G  G  Y  Y  *  N  K  Q  S  D  S  F  S  S  P  Y  S  F  I  F  L  N  I  F  C  S  T  I  Y  L  K  I  R  I  G  I  K  F  L  L  F  I  A  S  S  S  F  L  I  L  L  N  *  K  W  L  W  L  W  F  L  V  E  S  P  L  V  *  N  L  *  R  S  N  P  F  Q  F  Q  A  S  L  M  G  L  *  L  *  I  Q  S  K  N  C  T  L  H  P  R   : D  *  L  Y  L  G  V  Q  L  F  *  K  H  R  L  Q  L  W  R :   M  E  V  H  K  R  L  L  Q  F  Q  H  P  K  L  *  L  I  W  I  Q  I  Q  K  Q  R  L  *  R  L  P  L  G  I  A  L  G  H  F  S  T  R :   *  M  H  *  K  T  L  G  *  M  L  S  R  L  M  S  V  L  I  H  L  G  S  I  T  H  S  P  S  Q  K  R  K  F  M  L  L  V  P  L  C  C  *  V  I  F  L  F  L  L  Y  L  S  F  V  C  Y  Q  S  P  D  I  *  K  H  L  R  M  N  L  L  L  C  V  *  Q  H  *  F  P  D  *  N  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105816" stop="106021"/>
                    <exon start="106491" stop="106545"/>
                    <exon start="106652" stop="106777"/>
                    <exon start="106860" stop="106958"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKNRNKVSTFYCIFFFLDIIELKMAVAMVSCGIPTSLKLIEKQPVSIPGFFNGSLALNPVQKLHVTPKRLALSGSTIVLKASATAVEDGSSQETAAVPTPKVVIDLDSDPEATIVEVTFGDRLGALLDTMNALKNLGLNVVKANVCLDSSGKHNTFAITKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="105739" e_stop="106021"/>
            <exon e_start="106491" e_stop="106545"/>
            <exon e_start="106649" e_stop="106777"/>
            <exon e_start="106860" e_stop="106954"/>
            <exon e_start="107143" e_stop="107227"/>
            <exon e_start="107329" e_stop="107388"/>
            <exon e_start="107665" e_stop="107720"/>
            <exon e_start="107840" e_stop="107945"/>
            <exon e_start="108070" e_stop="108138"/>
            <exon e_start="108237" e_stop="108532"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.404" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.729" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.084" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105739" e_stop="106021" e_length="283"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="106022" i_stop="106490" i_length="469"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106491" e_stop="106545" e_length="55"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.404">
            <gDNA_intron_boundary i_start="106546" i_stop="106648" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106649" e_stop="106777" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="106778" i_stop="106859" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106860" e_stop="106954" e_length="95"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.729">
            <gDNA_intron_boundary i_start="106955" i_stop="107142" i_length="188"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="107143" e_stop="107227" e_length="85"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="107228" i_stop="107328" i_length="101"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="107329" e_stop="107388" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.084" acc_prob="0.997">
            <gDNA_intron_boundary i_start="107389" i_stop="107664" i_length="276"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="107665" e_stop="107720" e_length="56"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="107721" i_stop="107839" i_length="119"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="107840" e_stop="107945" e_length="106"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.995">
            <gDNA_intron_boundary i_start="107946" i_stop="108069" i_length="124"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="108070" e_stop="108138" e_length="69"/>
          </exon>
          <intron i_serial="9" don_prob="0.947" acc_prob="0.987">
            <gDNA_intron_boundary i_start="108139" i_stop="108236" i_length="98"/>
          </intron>
          <exon e_serial="10" e_score="0.997">
            <gDNA_exon_boundary e_start="108237" e_stop="108532" e_length="296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105739" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106649" stop="106777"/>
              <exon start="106860" stop="106954"/>
              <exon start="107143" stop="107227"/>
              <exon start="107329" stop="107388"/>
              <exon start="107665" stop="107715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105756" stop="106021"/>
              <exon start="106491" stop="106523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281421" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105864" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106649" stop="106777"/>
              <exon start="106860" stop="106954"/>
              <exon start="107143" stop="107227"/>
              <exon start="107329" stop="107388"/>
              <exon start="107665" stop="107720"/>
              <exon start="107840" stop="107910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105951" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106649" stop="106777"/>
              <exon start="106860" stop="106954"/>
              <exon start="107143" stop="107227"/>
              <exon start="107329" stop="107388"/>
              <exon start="107665" stop="107720"/>
              <exon start="107840" stop="107945"/>
              <exon start="108070" stop="108080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105951" stop="106021"/>
              <exon start="106491" stop="106545"/>
              <exon start="106649" stop="106777"/>
              <exon start="106860" stop="106954"/>
              <exon start="107143" stop="107227"/>
              <exon start="107329" stop="107388"/>
              <exon start="107665" stop="107720"/>
              <exon start="107840" stop="107858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106495" stop="106545"/>
              <exon start="106649" stop="106777"/>
              <exon start="106860" stop="106954"/>
              <exon start="107143" stop="107227"/>
              <exon start="107329" stop="107388"/>
              <exon start="107665" stop="107720"/>
              <exon start="107840" stop="107847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106680" stop="106777"/>
              <exon start="106860" stop="106954"/>
              <exon start="107143" stop="107227"/>
              <exon start="107329" stop="107388"/>
              <exon start="107665" stop="107720"/>
              <exon start="107840" stop="107945"/>
              <exon start="108070" stop="108130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106713" stop="106777"/>
              <exon start="106860" stop="106954"/>
              <exon start="107143" stop="107227"/>
              <exon start="107329" stop="107388"/>
              <exon start="107665" stop="107720"/>
              <exon start="107840" stop="107945"/>
              <exon start="108070" stop="108138"/>
              <exon start="108237" stop="108525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106719" stop="106777"/>
              <exon start="106860" stop="106954"/>
              <exon start="107143" stop="107227"/>
              <exon start="107329" stop="107388"/>
              <exon start="107665" stop="107720"/>
              <exon start="107840" stop="107945"/>
              <exon start="108070" stop="108138"/>
              <exon start="108237" stop="108525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106725" stop="106777"/>
              <exon start="106860" stop="106954"/>
              <exon start="107143" stop="107227"/>
              <exon start="107329" stop="107388"/>
              <exon start="107665" stop="107720"/>
              <exon start="107840" stop="107945"/>
              <exon start="108070" stop="108138"/>
              <exon start="108237" stop="108463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106872" stop="106954"/>
              <exon start="107143" stop="107227"/>
              <exon start="107329" stop="107388"/>
              <exon start="107665" stop="107720"/>
              <exon start="107840" stop="107945"/>
              <exon start="108070" stop="108138"/>
              <exon start="108237" stop="108532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106872" stop="106954"/>
              <exon start="107143" stop="107227"/>
              <exon start="107329" stop="107388"/>
              <exon start="107665" stop="107720"/>
              <exon start="107840" stop="107945"/>
              <exon start="108070" stop="108136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106915" stop="106954"/>
              <exon start="107143" stop="107227"/>
              <exon start="107329" stop="107388"/>
              <exon start="107665" stop="107720"/>
              <exon start="107840" stop="107945"/>
              <exon start="108070" stop="108138"/>
              <exon start="108237" stop="108523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106923" stop="106954"/>
              <exon start="107143" stop="107227"/>
              <exon start="107329" stop="107388"/>
              <exon start="107665" stop="107720"/>
              <exon start="107840" stop="107945"/>
              <exon start="108070" stop="108138"/>
              <exon start="108237" stop="108523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370212" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG : ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG : CAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG : ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC : TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG : GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAG : ATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG : TTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAG : GGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTCAACAG : GTTCTTGCGAATAGCCTGCGTTATTTCTTGAGGAGACCAACAACAGAGGATGCAAGTTTTTAATACAATGCTGAAAAGTGAGAAATTGTCAACAGGGTTAACCAAGTACTTTCAATTTTCAAGATAATGAAGCTTGCTGGTTTTAGCAGCACCGATCCATTCCAAGGTGTAAACAGCGAAAATATGCTTGAAACTCAGAATCATAGCTTCAATACTGCTGTAACAATGTAGATTGGTACCATTTATACATTAATGATATAAGTTTTCAGAACAGGAAAACAAAAACAATTATCAGT</gDNA_template>
            <first_frame> N  K  Q  S  D  S  F  S  S  P  Y  S  F  I  F  L  N  I  F  C  S  T  I  Y  L  K  I  R  I  G  I  K  F  L  L  F  I  A  S  S  S  F  L  I  L  L  N  *  K  W  L  W  L  W  F  L  V  E  S  P  L  V  *  N  L  *  R  S  N  P  F  Q  F  Q  A  S  L  M  G  L  *  L  *  I  Q  S  K  N  C  T  L  H  P  R   : D  *  L  Y  L  G  V  Q  L  F  *  K  H  R  L  Q  L  W  S :   R  M  E  V  H  K  R  L  L  Q  F  Q  H  P  K  L  *  L  I  W  I  Q  I  Q  K  Q  R  L  *  R  L  P  L  G  I  A  L  G  H  F  S  T  R :   *  M  H  *  K  T  L  G  *  M  L  S  R  L  M  S  V  L  I  H  L  G  S  I  T  H  S  P  S  Q  K   : L  L  R  V  G  R  S  M  I  Q  S  C  L  K  Q  F  V  *  R  S  S  I  I  *  W  N  T  T  R :   N  L  A  P  D  *  L  W  E  K  L  S  V  F  F  N  H  I  R  R :   L  T  W  T  *  R  P  I  S  M  F  M  T  M  L  L  K  E   : V  Y  S  V  *  R  Q  Q  T  D  L  D  *  *  L  I  L  S  R  P  L  L  T  *  M  L  M  L  N  Q  E  S  S  I  L  R :   V  C  L  L  R  R  N  F  M  S  T  T  R  A  K  R  *  S  S  P  F  N  R :   F  L  R  I  A  C  V  I  S  *  G  D  Q  Q  Q  R  M  Q  V  F  N  T  M  L  K  S  E  K  L  S  T  G  L  T  K  Y  F  Q  F  S  R  *  *  S  L  L  V  L  A  A  P  I  H  S  K  V  *  T  A  K  I  C  L  K  L  R  I  I  A  S  I  L  L  *  Q  C  R  L  V  P  F  I  H  *  *  Y  K  F  S  E  Q  E  N  K  N  N  Y  Q  </first_frame>
            <second_frame>  T  N  N  L  I  H  F  L  A  P  I  A  S  S  S  *  I  S  F  A  L  L  Y  I  L  R  *  E  *  E  *  S  F  Y  F  L  L  H  L  L  L  S  *  Y  Y  *  T  E  N  G  C  G  Y  G  F  L  W  N  P  H  *  F  K  T  Y  R  E  A  T  R  F  N  S  R  L  L  *  W  V  F  S  F  E  S  S  P  K  T  A  R  Y  T  Q  E  :  I  S  F  I  W  E  Y  N  C  S  E  S  I  G  Y  S  C  G   : A  G  W  K  F  T  R  D  C  C  S  S  N  T  Q  S  C  N  *  F  G  F  R  S  R  S  N  D  C  R  G  Y  L  W  G  S  P  W  G  T  S  R  H   : D  E  C  I  K  K  P  W  A  E  C  C  Q  G  *  C  L  S  *  F  I  W  E  A  *  H  I  R  H  H  K  S  :  F  Y  G  *  E  G  R  *  S  R  A  A  *  S  N  S  F  D  D  H  Q  *  Y  D  G  I  P  P   : G  I  *  L  Q  I  S  Y  G  R  S  F  R  C  F  S  T  I  S  E   : D  *  R  G  H  S  D  P  Y  P  C  L  *  R  C  S  *  K  K  :  F  T  L  C  R  D  S  R  Q  T  W  T  D  S  *  S  C  Q  D  H  Y  *  H  K  C  *  C  *  I  R  R  V  R  Y  *   : G  F  A  C  *  G  E  I  S  C  Q  L  Q  G  Q  S  V  D  Q  A  P  S  T   : G  S  C  E  *  P  A  L  F  L  E  E  T  N  N  R  G  C  K  F  L  I  Q  C  *  K  V  R  N  C  Q  Q  G  *  P  S  T  F  N  F  Q  D  N  E  A  C  W  F  *  Q  H  R  S  I  P  R  C  K  Q  R  K  Y  A  *  N  S  E  S  *  L  Q  Y  C  C  N  N  V  D  W  Y  H  L  Y  I  N  D  I  S  F  Q  N  R  K  T  K  T  I  I  S </second_frame>
            <third_frame>   Q  T  I  *  F  I  F  *  P  L  *  L  H  L  L  K  Y  L  L  L  Y  Y  I  S  *  D  K  N  R  N  K  V  S  T  F  Y  C  I  F  F  F  L  D  I  I  E  L  K  M  A  V  A  M  V  S  C  G  I  P  T  S  L  K  L  I  E  K  Q  P  V  S  I  P  G  F  F  N  G  S  L  A  L  N  P  V  Q  K  L  H  V  T  P  K  R :   L  A  L  S  G  S  T  I  V  L  K  A  S  A  T  A  V  E  :  Q  D  G  S  S  Q  E  T  A  A  V  P  T  P  K  V  V  I  D  L  D  S  D  P  E  A  T  I  V  E  V  T  F  G  D  R  L  G  A  L  L  D  T  :  M  N  A  L  K  N  L  G  L  N  V  V  K  A  N  V  C  L  D  S  S  G  K  H  N  T  F  A  I  T  K  A :   S  T  G  R  K  V  D  D  P  E  L  L  E  A  I  R  L  T  I  I  N  N  M  M  E  Y  H  P  :  E  S  S  S  R  L  A  M  G  E  A  F  G  V  F  Q  P  Y  Q  K  :  I  D  V  D  I  A  T  H  I  H  V  Y  D  D  A  P  E  R  S :   L  L  C  V  E  T  A  D  R  P  G  L  I  V  D  L  V  K  T  I  T  D  I  N  V  D  V  E  S  G  E  F  D  T  E  :  G  L  L  A  K  A  K  F  H  V  N  Y  K  G  K  A  L  I  K  P  L  Q  Q  :  V  L  A  N  S  L  R  Y  F  L  R  R  P  T  T  E  D  A  S  F  *  Y  N  A  E  K  *  E  I  V  N  R  V  N  Q  V  L  S  I  F  K  I  M  K  L  A  G  F  S  S  T  D  P  F  Q  G  V  N  S  E  N  M  L  E  T  Q  N  H  S  F  N  T  A  V  T  M  *  I  G  T  I  Y  T  L  M  I  *  V  F  R  T  G  K  Q  K  Q  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105816" stop="106021"/>
                    <exon start="106491" stop="106545"/>
                    <exon start="106649" stop="106777"/>
                    <exon start="106860" stop="106954"/>
                    <exon start="107143" stop="107227"/>
                    <exon start="107329" stop="107388"/>
                    <exon start="107665" stop="107720"/>
                    <exon start="107840" stop="107945"/>
                    <exon start="108070" stop="108138"/>
                    <exon start="108237" stop="108299"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>921</number_coding_nucleotides>
                  <number_encoded_amino_acids>307</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKNRNKVSTFYCIFFFLDIIELKMAVAMVSCGIPTSLKLIEKQPVSIPGFFNGSLALNPVQKLHVTPKRLALSGSTIVLKASATAVEQDGSSQETAAVPTPKVVIDLDSDPEATIVEVTFGDRLGALLDTMNALKNLGLNVVKANVCLDSSGKHNTFAITKASTGRKVDDPELLEAIRLTIINNMMEYHPESSSRLAMGEAFGVFQPYQKIDVDIATHIHVYDDAPERSLLCVETADRPGLIVDLVKTITDINVDVESGEFDTEGLLAKAKFHVNYKGKALIKPLQQVLANSLRYFLRRPTTEDASF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="107130" e_stop="107720"/>
            <exon e_start="107840" e_stop="107945"/>
            <exon e_start="108070" e_stop="108138"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107130" e_stop="107720" e_length="591"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="107721" i_stop="107839" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107840" e_stop="107945" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.995">
            <gDNA_intron_boundary i_start="107946" i_stop="108069" i_length="124"/>
          </intron>
          <exon e_serial="3" e_score="0.971">
            <gDNA_exon_boundary e_start="108070" e_stop="108138" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107130" stop="107720"/>
              <exon start="107840" stop="107945"/>
              <exon start="108070" stop="108138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107133" stop="107720"/>
              <exon start="107840" stop="107945"/>
              <exon start="108070" stop="108124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322009" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG : TTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAG : GGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTCAACAG</gDNA_template>
            <first_frame> D  L  F  L  V  L  R  V  G  R  S  M  I  Q  S  C  L  K  Q  F  V  *  R  S  S  I  I  *  W  N  T  T  R  *  N  F  N  K  L  L  S  I  S  C  L  I  W  Y  L  L  R  D  S  Y  I  A  A  S  S  Y  C  I  I  S  D  A  G  I  *  L  Q  I  S  Y  G  R  S  F  R  C  F  S  T  I  S  E  G  C  *  *  P  I  Y  A  V  L  A  S  S  V  C  I  H  R  *  V  D  Y  A  H  L  Y  W  L  F  *  T  C  G  S  G  G  L  F  S  E  C  A  R  F  L  L  V  L  A  S  *  *  R  L  I  A  F  F  L  V  Q  I  *  Y  R  N  *  G  L  M  Y  I  N  F  H  I  N  H  L  T  *  I  L  L  C  C  L  C  *  K  F  S  D  *  R  G  H  S  D  P  Y  P  C  L  *  R  C  S  *  K  K  :  F  T  L  C  R  D  S  R  Q  T  W  T  D  S  *  S  C  Q  D  H  Y  *  H  K  C  *  C  *  I  R  R  V  R  Y  *   : G  F  A  C  *  G  E  I  S  C  Q  L  Q  G  Q  S  V  D  Q  A  P  S  T  </first_frame>
            <second_frame>  T  C  F  *  F  Y  G  *  E  G  R  *  S  R  A  A  *  S  N  S  F  D  D  H  Q  *  Y  D  G  I  P  P  G  R  T  S  I  S  Y  *  A  S  V  A  *  S  G  T  S  *  G  I  L  I  *  L  L  L  L  T  A  *  F  L  M  Q  E  S  S  S  R  L  A  M  G  E  A  F  G  V  F  Q  P  Y  Q  K  V  V  N  S  L  Y  M  L  S  S  P  P  V  C  V  Y  T  V  K  *  I  M  H  I  C  I  G  Y  F  E  H  V  G  V  G  G  C  F  L  N  V  R  G  S  C  *  S  L  H  H  S  N  D  *  *  L  S  F  *  Y  K  F  D  T  E  T  K  A  *  C  T  *  T  F  I  S  I  I  *  L  K  S  Y  F  V  V  Y  A  E  N  F  Q  I  D  V  D  I  A  T  H  I  H  V  Y  D  D  A  P  E  R  S :   L  L  C  V  E  T  A  D  R  P  G  L  I  V  D  L  V  K  T  I  T  D  I  N  V  D  V  E  S  G  E  F  D  T  E  :  G  L  L  A  K  A  K  F  H  V  N  Y  K  G  K  A  L  I  K  P  L  Q  Q </second_frame>
            <third_frame>   L  V  S  S  S  T  G  R  K  V  D  D  P  E  L  L  E  A  I  R  L  T  I  I  N  N  M  M  E  Y  H  P  V  E  L  Q  *  V  I  E  H  Q  L  L  D  L  V  P  P  E  G  F  L  Y  S  C  F  F  L  L  H  N  F  *  C  R  N  L  A  P  D  *  L  W  E  K  L  S  V  F  F  N  H  I  R  R  L  L  I  A  Y  I  C  C  P  R  L  Q  C  V  Y  T  P  L  S  R  L  C  T  S  V  L  V  I  L  N  M  W  E  W  G  V  V  F  *  M  C  E  V  P  A  S  P  C  I  I  V  T  T  N  S  F  L  S  S  T  N  L  I  Q  K  L  R  L  D  V  H  K  L  S  Y  Q  S  F  N  L  N  L  T  L  L  F  M  L  K  I  F  R  L  T  W  T  *  R  P  I  S  M  F  M  T  M  L  L  K  E   : V  Y  S  V  *  R  Q  Q  T  D  L  D  *  *  L  I  L  S  R  P  L  L  T  *  M  L  M  L  N  Q  E  S  S  I  L  R :   V  C  L  L  R  R  N  F  M  S  T  T  R  A  K  R  *  S  S  P  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107626" stop="107720"/>
                    <exon start="107840" stop="107945"/>
                    <exon start="108070" stop="108138"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKSYFVVYAENFQIDVDIATHIHVYDDAPERSLLCVETADRPGLIVDLVKTITDINVDVESGEFDTEGLLAKAKFHVNYKGKALIKPLQQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="111669" PGL_stop="122777"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111669" e_stop="111914"/>
            <exon e_start="116084" e_stop="116131"/>
            <exon e_start="116944" e_stop="117092"/>
            <exon e_start="117174" e_stop="117222"/>
            <exon e_start="118213" e_stop="118269"/>
            <exon e_start="118725" e_stop="118913"/>
            <exon e_start="118999" e_stop="119133"/>
            <exon e_start="120017" e_stop="120078"/>
            <exon e_start="120164" e_stop="120266"/>
            <exon e_start="120349" e_stop="120463"/>
            <exon e_start="120993" e_stop="121069"/>
            <exon e_start="121152" e_stop="121289"/>
            <exon e_start="121401" e_stop="121565"/>
            <exon e_start="122006" e_stop="122119"/>
            <exon e_start="122212" e_stop="122305"/>
            <exon e_start="122409" e_stop="122777"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.967" e_score="0.931"/>
          <exon-intron don_prob="0.999" acc_prob="0.928" e_score="0.958"/>
          <exon-intron don_prob="0.001" acc_prob="0.984" e_score="0.980"/>
          <exon-intron don_prob="0.997" acc_prob="0.968" e_score="0.959"/>
          <exon-intron don_prob="0.981" acc_prob="0.992" e_score="0.965"/>
          <exon-intron don_prob="0.954" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.876" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.125" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.215" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.116" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.820" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="111669" e_stop="111914" e_length="246"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.967">
            <gDNA_intron_boundary i_start="111915" i_stop="116083" i_length="4169"/>
          </intron>
          <exon e_serial="2" e_score="0.958">
            <gDNA_exon_boundary e_start="116084" e_stop="116131" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.928">
            <gDNA_intron_boundary i_start="116132" i_stop="116943" i_length="812"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="116944" e_stop="117092" e_length="149"/>
          </exon>
          <intron i_serial="3" don_prob="0.001" acc_prob="0.984">
            <gDNA_intron_boundary i_start="117093" i_stop="117173" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="0.959">
            <gDNA_exon_boundary e_start="117174" e_stop="117222" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.968">
            <gDNA_intron_boundary i_start="117223" i_stop="118212" i_length="990"/>
          </intron>
          <exon e_serial="5" e_score="0.965">
            <gDNA_exon_boundary e_start="118213" e_stop="118269" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.992">
            <gDNA_intron_boundary i_start="118270" i_stop="118724" i_length="455"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="118725" e_stop="118913" e_length="189"/>
          </exon>
          <intron i_serial="6" don_prob="0.954" acc_prob="0.993">
            <gDNA_intron_boundary i_start="118914" i_stop="118998" i_length="85"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="118999" e_stop="119133" e_length="135"/>
          </exon>
          <intron i_serial="7" don_prob="0.941" acc_prob="0.876">
            <gDNA_intron_boundary i_start="119134" i_stop="120016" i_length="883"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="120017" e_stop="120078" e_length="62"/>
          </exon>
          <intron i_serial="8" don_prob="0.966" acc_prob="0.125">
            <gDNA_intron_boundary i_start="120079" i_stop="120163" i_length="85"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="120164" e_stop="120266" e_length="103"/>
          </exon>
          <intron i_serial="9" don_prob="0.991" acc_prob="0.215">
            <gDNA_intron_boundary i_start="120267" i_stop="120348" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="120349" e_stop="120463" e_length="115"/>
          </exon>
          <intron i_serial="10" don_prob="0.973" acc_prob="0.116">
            <gDNA_intron_boundary i_start="120464" i_stop="120992" i_length="529"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="120993" e_stop="121069" e_length="77"/>
          </exon>
          <intron i_serial="11" don_prob="0.886" acc_prob="0.996">
            <gDNA_intron_boundary i_start="121070" i_stop="121151" i_length="82"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="121152" e_stop="121289" e_length="138"/>
          </exon>
          <intron i_serial="12" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="121290" i_stop="121400" i_length="111"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="121401" e_stop="121565" e_length="165"/>
          </exon>
          <intron i_serial="13" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="121566" i_stop="122005" i_length="440"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="122006" e_stop="122119" e_length="114"/>
          </exon>
          <intron i_serial="14" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="122120" i_stop="122211" i_length="92"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="122212" e_stop="122305" e_length="94"/>
          </exon>
          <intron i_serial="15" don_prob="0.820" acc_prob="0.976">
            <gDNA_intron_boundary i_start="122306" i_stop="122408" i_length="103"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="122409" e_stop="122777" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111669" stop="111914"/>
              <exon start="116084" stop="116131"/>
              <exon start="116944" stop="117092"/>
              <exon start="117174" stop="117222"/>
              <exon start="118213" stop="118269"/>
              <exon start="118725" stop="118881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111701" stop="111914"/>
              <exon start="116084" stop="116131"/>
              <exon start="116944" stop="117092"/>
              <exon start="117174" stop="117222"/>
              <exon start="118213" stop="118269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118725" stop="118913"/>
              <exon start="118999" stop="119133"/>
              <exon start="120017" stop="120078"/>
              <exon start="120164" stop="120266"/>
              <exon start="120349" stop="120404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120257" stop="120266"/>
              <exon start="120349" stop="120463"/>
              <exon start="120993" stop="121069"/>
              <exon start="121152" stop="121289"/>
              <exon start="121401" stop="121565"/>
              <exon start="122006" stop="122119"/>
              <exon start="122212" stop="122305"/>
              <exon start="122409" stop="122459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121541" stop="121565"/>
              <exon start="122006" stop="122119"/>
              <exon start="122212" stop="122305"/>
              <exon start="122409" stop="122777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249146" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTAAAGTTCAATTTATTTACCAAAGTTTCTGCGCGCACACAGATATTTGGATTTGTTGCTTCCTGAAATTGTAGCAATCGGCGGCAGTAGCAGCCATGGGAAATTGCTGCTCCGACGAGAACGGTGGACATTCGGGGGTCGGCGGTAACGGTGCTTACGCGGCAAATCAAAACAACGGCCATAACGAAGCCTTCGATGCTCTACTCAAGTCTCGCGGTTACCAAGGCCTCTACTCGCATGTCGAG : TTGTCTCTATCTGCTACCGGTTTGCGTGATCGCGATGTGCTTTCCAAG : AGTGATCCTATGGTAGTCATTTATTCAAAAGGAAGAGATGGTTCATTGCAAGAGCTTAGTCGTACTGAAGTAGTTCCAAACTCATTGAATCCCAAGTGGATTACAAAGTATACTATTGCCTATCATTTTGAGACAGTGCAGAATTTAGT : GTTCCGTGTCTGTGATGTTGACACCCAATTTCATAATCAAGATGTCAAG : ATGCTTAAACTGGAGGAGCAGGACTTTCTTGGCGAGGCTAGTTGCACATTATCTGAG : ATTGTCACAAAGTCAAACGGGTCCCTGACCTTAGACATTATACGTGGAGAACAATCTTCTGGTCCAACGCATGCCCAAAAATCTGGTAAGCTTACTATTTGTGCTGAAGAAAGTGTTGCCTCAAAGACTACTGTAGAGTTGAAATTGAGATGTTCAGAATTGGTGTCCAAGGATTTGTTCTCCAAAAGT : GATCCCTTTTTGGTGATATCTAAATATACAGAGAGTGGAATGATGGTTCCAATTTGCAAAACAGAAATTATTAAAGATGATCATAGTCCAAAGTGGAAACCAATTATCGTGAATATTCAACAAGTTGGAAGTAAG : GACAGTCCATTGACTATTGAGTGTTATGACTTCAATTCAAACGGAAAGCATGATTTAATTGG : CAAGATTCAGAAATCACTATCAGATTTAGAAGTGTTGCACTCGACTGGTTCGAGTACTAATCTTTTCACATCAGCTGCTGTAGGACAAAGTTCGCAAAACAAG : GTCCTAAAGAGCCAGCTTTTTGTGGATAGCTTTTTCGAGAAAACCCAGCATACATTCCTCGATTACTTGGCATGGGGCTATGAACTTAACTTCATGGTGGCCATTGACTTTACTG : CTTCTAATGGAAATCCACGCTTACACGATTCATTGCATTATATCGATCCTTCAGGACGGCCAAATGATTATCAGAGA : GCCATCTTGGATGCTGGAGAGGTATTGCAGTTCTATGATAGAGACCGACGTTATCCTGCTTGGGGTTTTGGAGCGCGGCCAATCGATGGCCCTGTTTCTCATTGCTTCAATCTAAATGGCAGCAGTGACTACTGTGAG : GTGGAAGGAATCCAGGGTATCATGACGGCATACATGAGTGCCCTTTTTAATGTTTCACTTGCAGGACCAACTATATTTGGACCAGTTGTTACGTCAGCTGCAGATATAGCAAATCAGTCTTTGATGAAGCGCGAGCGGAAGTACTTCGTTTTGTTAATAATCACG : GACGGAGTGATAACAGATCTCCAAGAAACAATGGATGCCCTTGTTCATGCTGCGGATTTGCCATTGTCAGTTCTTATTGTTGGGGTTGGAGGAGCTGATTTCAAGGAAATGGAG : ATTTTAGATGCTGACAAACAGAGACTTGAATCAACACATGGGCGTGTTGCAGTGCGTGACATAGTCCAATTTGTTCCCTTCCGGGATGTACAAA : GTGGAGACTCGGTCCTTCAAGCACTTTTAGCAGAACTACCTTCCCAGTTTTTGGAATACATGCGGCTCAAAAGGATCCAGCCAACTTAACGATCATACAAGAATTGTACATACAAATGTTGATTCATGTATTGTGTCCTGTTAAATTCGCCATTTTCTAGCTTGTTCCCCAATGGTGTCAGAAGTTTTGTTTTTGGATGTCTCAATTCGCCTTCTCTTTCCTATTTCCCAGAAGCTTGTACTTTTTAAATTATATTTCTTCATTATCATCTTCTTATTTATTTTGTTGATTCAATTTCAAATGAAGCTCTTTTACCTTTGTGTACTGATTGTGTAAATGTAATCTCGTCAGGATGAAAGGATGCTGCAA</gDNA_template>
            <first_frame> S  K  V  Q  F  I  Y  Q  S  F  C  A  H  T  D  I  W  I  C  C  F  L  K  L  *  Q  S  A  A  V  A  A  M  G  N  C  C  S  D  E  N  G  G  H  S  G  V  G  G  N  G  A  Y  A  A  N  Q  N  N  G  H  N  E  A  F  D  A  L  L  K  S  R  G  Y  Q  G  L  Y  S  H  V  E  :  L  S  L  S  A  T  G  L  R  D  R  D  V  L  S  K  :  S  D  P  M  V  V  I  Y  S  K  G  R  D  G  S  L  Q  E  L  S  R  T  E  V  V  P  N  S  L  N  P  K  W  I  T  K  Y  T  I  A  Y  H  F  E  T  V  Q  N  L  V :   F  R  V  C  D  V  D  T  Q  F  H  N  Q  D  V  K  :  M  L  K  L  E  E  Q  D  F  L  G  E  A  S  C  T  L  S  E  :  I  V  T  K  S  N  G  S  L  T  L  D  I  I  R  G  E  Q  S  S  G  P  T  H  A  Q  K  S  G  K  L  T  I  C  A  E  E  S  V  A  S  K  T  T  V  E  L  K  L  R  C  S  E  L  V  S  K  D  L  F  S  K  S  :  D  P  F  L  V  I  S  K  Y  T  E  S  G  M  M  V  P  I  C  K  T  E  I  I  K  D  D  H  S  P  K  W  K  P  I  I  V  N  I  Q  Q  V  G  S  K  :  D  S  P  L  T  I  E  C  Y  D  F  N  S  N  G  K  H  D  L  I  G :   K  I  Q  K  S  L  S  D  L  E  V  L  H  S  T  G  S  S  T  N  L  F  T  S  A  A  V  G  Q  S  S  Q  N  K  :  V  L  K  S  Q  L  F  V  D  S  F  F  E  K  T  Q  H  T  F  L  D  Y  L  A  W  G  Y  E  L  N  F  M  V  A  I  D  F  T   : A  S  N  G  N  P  R  L  H  D  S  L  H  Y  I  D  P  S  G  R  P  N  D  Y  Q  R  :  A  I  L  D  A  G  E  V  L  Q  F  Y  D  R  D  R  R  Y  P  A  W  G  F  G  A  R  P  I  D  G  P  V  S  H  C  F  N  L  N  G  S  S  D  Y  C  E  :  V  E  G  I  Q  G  I  M  T  A  Y  M  S  A  L  F  N  V  S  L  A  G  P  T  I  F  G  P  V  V  T  S  A  A  D  I  A  N  Q  S  L  M  K  R  E  R  K  Y  F  V  L  L  I  I  T  :  D  G  V  I  T  D  L  Q  E  T  M  D  A  L  V  H  A  A  D  L  P  L  S  V  L  I  V  G  V  G  G  A  D  F  K  E  M  E  :  I  L  D  A  D  K  Q  R  L  E  S  T  H  G  R  V  A  V  R  D  I  V  Q  F  V  P  F  R  D  V  Q   : S  G  D  S  V  L  Q  A  L  L  A  E  L  P  S  Q  F  L  E  Y  M  R  L  K  R  I  Q  P  T  *  R  S  Y  K  N  C  T  Y  K  C  *  F  M  Y  C  V  L  L  N  S  P  F  S  S  L  F  P  N  G  V  R  S  F  V  F  G  C  L  N  S  P  S  L  S  Y  F  P  E  A  C  T  F  *  I  I  F  L  H  Y  H  L  L  I  Y  F  V  D  S  I  S  N  E  A  L  L  P  L  C  T  D  C  V  N  V  I  S  S  G  *  K  D  A  A  </first_frame>
            <second_frame>  V  K  F  N  L  F  T  K  V  S  A  R  T  Q  I  F  G  F  V  A  S  *  N  C  S  N  R  R  Q  *  Q  P  W  E  I  A  A  P  T  R  T  V  D  I  R  G  S  A  V  T  V  L  T  R  Q  I  K  T  T  A  I  T  K  P  S  M  L  Y  S  S  L  A  V  T  K  A  S  T  R  M  S  S :   C  L  Y  L  L  P  V  C  V  I  A  M  C  F  P  R :   V  I  L  W  *  S  F  I  Q  K  E  E  M  V  H  C  K  S  L  V  V  L  K  *  F  Q  T  H  *  I  P  S  G  L  Q  S  I  L  L  P  I  I  L  R  Q  C  R  I  *   : C  S  V  S  V  M  L  T  P  N  F  I  I  K  M  S  R :   C  L  N  W  R  S  R  T  F  L  A  R  L  V  A  H  Y  L  R :   L  S  Q  S  Q  T  G  P  *  P  *  T  L  Y  V  E  N  N  L  L  V  Q  R  M  P  K  N  L  V  S  L  L  F  V  L  K  K  V  L  P  Q  R  L  L  *  S  *  N  *  D  V  Q  N  W  C  P  R  I  C  S  P  K  V :   I  P  F  W  *  Y  L  N  I  Q  R  V  E  *  W  F  Q  F  A  K  Q  K  L  L  K  M  I  I  V  Q  S  G  N  Q  L  S  *  I  F  N  K  L  E  V  R :   T  V  H  *  L  L  S  V  M  T  S  I  Q  T  E  S  M  I  *  L   : A  R  F  R  N  H  Y  Q  I  *  K  C  C  T  R  L  V  R  V  L  I  F  S  H  Q  L  L  *  D  K  V  R  K  T  R :   S  *  R  A  S  F  L  W  I  A  F  S  R  K  P  S  I  H  S  S  I  T  W  H  G  A  M  N  L  T  S  W  W  P  L  T  L  L  :  L  L  M  E  I  H  A  Y  T  I  H  C  I  I  S  I  L  Q  D  G  Q  M  I  I  R  E :   P  S  W  M  L  E  R  Y  C  S  S  M  I  E  T  D  V  I  L  L  G  V  L  E  R  G  Q  S  M  A  L  F  L  I  A  S  I  *  M  A  A  V  T  T  V  R :   W  K  E  S  R  V  S  *  R  H  T  *  V  P  F  L  M  F  H  L  Q  D  Q  L  Y  L  D  Q  L  L  R  Q  L  Q  I  *  Q  I  S  L  *  *  S  A  S  G  S  T  S  F  C  *  *  S  R :   T  E  *  *  Q  I  S  K  K  Q  W  M  P  L  F  M  L  R  I  C  H  C  Q  F  L  L  L  G  L  E  E  L  I  S  R  K  W  R :   F  *  M  L  T  N  R  D  L  N  Q  H  M  G  V  L  Q  C  V  T  *  S  N  L  F  P  S  G  M  Y  K  :  V  E  T  R  S  F  K  H  F  *  Q  N  Y  L  P  S  F  W  N  T  C  G  S  K  G  S  S  Q  L  N  D  H  T  R  I  V  H  T  N  V  D  S  C  I  V  S  C  *  I  R  H  F  L  A  C  S  P  M  V  S  E  V  L  F  L  D  V  S  I  R  L  L  F  P  I  S  Q  K  L  V  L  F  K  L  Y  F  F  I  I  I  F  L  F  I  L  L  I  Q  F  Q  M  K  L  F  Y  L  C  V  L  I  V  *  M  *  S  R  Q  D  E  R  M  L  Q </second_frame>
            <third_frame>   *  S  S  I  Y  L  P  K  F  L  R  A  H  R  Y  L  D  L  L  L  P  E  I  V  A  I  G  G  S  S  S  H  G  K  L  L  L  R  R  E  R  W  T  F  G  G  R  R  *  R  C  L  R  G  K  S  K  Q  R  P  *  R  S  L  R  C  S  T  Q  V  S  R  L  P  R  P  L  L  A  C  R   : V  V  S  I  C  Y  R  F  A  *  S  R  C  A  F  Q   : E  *  S  Y  G  S  H  L  F  K  R  K  R  W  F  I  A  R  A  *  S  Y  *  S  S  S  K  L  I  E  S  Q  V  D  Y  K  V  Y  Y  C  L  S  F  *  D  S  A  E  F  S  :  V  P  C  L  *  C  *  H  P  I  S  *  S  R  C  Q   : D  A  *  T  G  G  A  G  L  S  W  R  G  *  L  H  I  I  *   : D  C  H  K  V  K  R  V  P  D  L  R  H  Y  T  W  R  T  I  F  W  S  N  A  C  P  K  I  W  *  A  Y  Y  L  C  *  R  K  C  C  L  K  D  Y  C  R  V  E  I  E  M  F  R  I  G  V  Q  G  F  V  L  Q  K   : *  S  L  F  G  D  I  *  I  Y  R  E  W  N  D  G  S  N  L  Q  N  R  N  Y  *  R  *  S  *  S  K  V  E  T  N  Y  R  E  Y  S  T  S  W  K  *   : G  Q  S  I  D  Y  *  V  L  *  L  Q  F  K  R  K  A  *  F  N  W  :  Q  D  S  E  I  T  I  R  F  R  S  V  A  L  D  W  F  E  Y  *  S  F  H  I  S  C  C  R  T  K  F  A  K  Q   : G  P  K  E  P  A  F  C  G  *  L  F  R  E  N  P  A  Y  I  P  R  L  L  G  M  G  L  *  T  *  L  H  G  G  H  *  L  Y  C :   F  *  W  K  S  T  L  T  R  F  I  A  L  Y  R  S  F  R  T  A  K  *  L  S  E   : S  H  L  G  C  W  R  G  I  A  V  L  *  *  R  P  T  L  S  C  L  G  F  W  S  A  A  N  R  W  P  C  F  S  L  L  Q  S  K  W  Q  Q  *  L  L  *   : G  G  R  N  P  G  Y  H  D  G  I  H  E  C  P  F  *  C  F  T  C  R  T  N  Y  I  W  T  S  C  Y  V  S  C  R  Y  S  K  S  V  F  D  E  A  R  A  E  V  L  R  F  V  N  N  H   : G  R  S  D  N  R  S  P  R  N  N  G  C  P  C  S  C  C  G  F  A  I  V  S  S  Y  C  W  G  W  R  S  *  F  Q  G  N  G   : D  F  R  C  *  Q  T  E  T  *  I  N  T  W  A  C  C  S  A  *  H  S  P  I  C  S  L  P  G  C  T  K :   W  R  L  G  P  S  S  T  F  S  R  T  T  F  P  V  F  G  I  H  A  A  Q  K  D  P  A  N  L  T  I  I  Q  E  L  Y  I  Q  M  L  I  H  V  L  C  P  V  K  F  A  I  F  *  L  V  P  Q  W  C  Q  K  F  C  F  W  M  S  Q  F  A  F  S  F  L  F  P  R  S  L  Y  F  L  N  Y  I  S  S  L  S  S  S  Y  L  F  C  *  F  N  F  K  *  S  S  F  T  F  V  Y  *  L  C  K  C  N  L  V  R  M  K  G  C  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111744" stop="111914"/>
                    <exon start="116084" stop="116131"/>
                    <exon start="116944" stop="117092"/>
                    <exon start="117174" stop="117222"/>
                    <exon start="118213" stop="118269"/>
                    <exon start="118725" stop="118913"/>
                    <exon start="118999" stop="119133"/>
                    <exon start="120017" stop="120078"/>
                    <exon start="120164" stop="120266"/>
                    <exon start="120349" stop="120463"/>
                    <exon start="120993" stop="121069"/>
                    <exon start="121152" stop="121289"/>
                    <exon start="121401" stop="121565"/>
                    <exon start="122006" stop="122119"/>
                    <exon start="122212" stop="122305"/>
                    <exon start="122409" stop="122497"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1752</number_coding_nucleotides>
                  <number_encoded_amino_acids>584</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSAAVAAMGNCCSDENGGHSGVGGNGAYAANQNNGHNEAFDALLKSRGYQGLYSHVELSLSATGLRDRDVLSKSDPMVVIYSKGRDGSLQELSRTEVVPNSLNPKWITKYTIAYHFETVQNLVFRVCDVDTQFHNQDVKMLKLEEQDFLGEASCTLSEIVTKSNGSLTLDIIRGEQSSGPTHAQKSGKLTICAEESVASKTTVELKLRCSELVSKDLFSKSDPFLVISKYTESGMMVPICKTEIIKDDHSPKWKPIIVNIQQVGSKDSPLTIECYDFNSNGKHDLIGKIQKSLSDLEVLHSTGSSTNLFTSAAVGQSSQNKVLKSQLFVDSFFEKTQHTFLDYLAWGYELNFMVAIDFTASNGNPRLHDSLHYIDPSGRPNDYQRAILDAGEVLQFYDRDRRYPAWGFGARPIDGPVSHCFNLNGSSDYCEVEGIQGIMTAYMSALFNVSLAGPTIFGPVVTSAADIANQSLMKRERKYFVLLIITDGVITDLQETMDALVHAADLPLSVLIVGVGGADFKEMEILDADKQRLESTHGRVAVRDIVQFVPFRDVQSGDSVLQALLAELPSQFLEYMRLKRIQPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="126015" PGL_stop="130601"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126015" e_stop="126231"/>
            <exon e_start="128146" e_stop="128190"/>
            <exon e_start="128271" e_stop="128377"/>
            <exon e_start="129583" e_stop="129617"/>
            <exon e_start="130266" e_stop="130516"/>
            <exon e_start="130585" e_stop="130601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.330" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.835" e_score="1.000"/>
          <exon-intron don_prob="0.540" acc_prob="0.187" e_score="1.000"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="126015" e_stop="126231" e_length="217"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.907">
            <gDNA_intron_boundary i_start="126232" i_stop="128145" i_length="1914"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="128146" e_stop="128190" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.955">
            <gDNA_intron_boundary i_start="128191" i_stop="128270" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128271" e_stop="128377" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.330">
            <gDNA_intron_boundary i_start="128378" i_stop="129582" i_length="1205"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="129583" e_stop="129617" e_length="35"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="0.835">
            <gDNA_intron_boundary i_start="129618" i_stop="130265" i_length="648"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="130266" e_stop="130516" e_length="251"/>
          </exon>
          <intron i_serial="5" don_prob="0.540" acc_prob="0.187">
            <gDNA_intron_boundary i_start="130517" i_stop="130584" i_length="68"/>
          </intron>
          <exon e_serial="6" e_score="0.800">
            <gDNA_exon_boundary e_start="130585" e_stop="130601" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126015" stop="126231"/>
              <exon start="128146" stop="128190"/>
              <exon start="128271" stop="128377"/>
              <exon start="129583" stop="129617"/>
              <exon start="130266" stop="130516"/>
              <exon start="130585" stop="130601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126019" stop="126231"/>
              <exon start="128146" stop="128190"/>
              <exon start="128271" stop="128377"/>
              <exon start="129583" stop="129617"/>
              <exon start="130266" stop="130516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126059" stop="126231"/>
              <exon start="128146" stop="128190"/>
              <exon start="128271" stop="128377"/>
              <exon start="129583" stop="129617"/>
              <exon start="130266" stop="130516"/>
              <exon start="130585" stop="130594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694994" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGGTTTCCATTGCTTAAATCTTCTTCATCCTTCCGACTCATAGATTTTCTCAAGCTTATTTGGTTATCGAGAGGTGGCTTAGCTTGAGTTTACTCTCCATTGTTGTATTCTCCGAGATCGGAGATAAACGGATTGGATCTGGAGATCAGATACTGTTTTAAAAATCCTCATTTTTCATATATTCACTGCAATTTCGCTTTAGGATCTTGATTTAAG : GCTTGGTGGAAGGCAAAACTGATTTAGAGAGGGCATTCAGATATG : TCGGCACTCTTCAATTTCCACTCCTTTTTGACAGTAGTGCTGTTAGGGATTTGTACATGCACTTATGTGAAGATGCATTTTCCTGCACTACTTGAACAGAGAACTGG : GTTTCGAGGTTTCTTTTGGAAGGCTGCTAGAATAG : GTGAACGGTTGAGTCCTTGGGTGGCAGTGGGCTGCTTGACGATGGGTGTTTCAATAATCTTCTTCTGAGAGAACAACTGTTTGCAATTCATGAAAGTACACTCTCAGCTGGGCTTAAATTAGCACTTGAATCTATTTTTCATCAAATGATCTGTTCGATTAAAAGATGGCACGAAACTTGATGTGACACCAACACTGCTTTCTTGATCATGAACTGAGTTTTATCGTGTGGAAATTTTGGATTGTGACAAT : GTAAAAAAAAAAGATTG</gDNA_template>
            <first_frame> V  V  S  I  A  *  I  F  F  I  L  P  T  H  R  F  S  Q  A  Y  L  V  I  E  R  W  L  S  L  S  L  L  S  I  V  V  F  S  E  I  G  D  K  R  I  G  S  G  D  Q  I  L  F  *  K  S  S  F  F  I  Y  S  L  Q  F  R  F  R  I  L  I  *   : G  L  V  E  G  K  T  D  L  E  R  A  F  R  Y   : V  G  T  L  Q  F  P  L  L  F  D  S  S  A  V  R  D  L  Y  M  H  L  C  E  D  A  F  S  C  T  T  *  T  E  N  W  :  V  S  R  F  L  L  E  G  C  *  N  R :   *  T  V  E  S  L  G  G  S  G  L  L  D  D  G  C  F  N  N  L  L  L  R  E  Q  L  F  A  I  H  E  S  T  L  S  A  G  L  K  L  A  L  E  S  I  F  H  Q  M  I  C  S  I  K  R  W  H  E  T  *  C  D  T  N  T  A  F  L  I  M  N  *  V  L  S  C  G  N  F  G  L  *  Q   : C  K  K  K  R  L </first_frame>
            <second_frame>  W  F  P  L  L  K  S  S  S  S  F  R  L  I  D  F  L  K  L  I  W  L  S  R  G  G  L  A  *  V  Y  S  P  L  L  Y  S  P  R  S  E  I  N  G  L  D  L  E  I  R  Y  C  F  K  N  P  H  F  S  Y  I  H  C  N  F  A  L  G  S  *  F  K  :  A  W  W  K  A  K  L  I  *  R  G  H  S  D  M  :  S  A  L  F  N  F  H  S  F  L  T  V  V  L  L  G  I  C  T  C  T  Y  V  K  M  H  F  P  A  L  L  E  Q  R  T  G :   F  R  G  F  F  W  K  A  A  R  I   : G  E  R  L  S  P  W  V  A  V  G  C  L  T  M  G  V  S  I  I  F  F  *  E  N  N  C  L  Q  F  M  K  V  H  S  Q  L  G  L  N  *  H  L  N  L  F  F  I  K  *  S  V  R  L  K  D  G  T  K  L  D  V  T  P  T  L  L  S  *  S  *  T  E  F  Y  R  V  E  I  L  D  C  D  N  :  V  K  K  K  D   </second_frame>
            <third_frame>   G  F  H  C  L  N  L  L  H  P  S  D  S  *  I  F  S  S  L  F  G  Y  R  E  V  A  *  L  E  F  T  L  H  C  C  I  L  R  D  R  R  *  T  D  W  I  W  R  S  D  T  V  L  K  I  L  I  F  H  I  F  T  A  I  S  L  *  D  L  D  L  R :   L  G  G  R  Q  N  *  F  R  E  G  I  Q  I  C :   R  H  S  S  I  S  T  P  F  *  Q  *  C  C  *  G  F  V  H  A  L  M  *  R  C  I  F  L  H  Y  L  N  R  E  L   : G  F  E  V  S  F  G  R  L  L  E  *  :  V  N  G  *  V  L  G  W  Q  W  A  A  *  R  W  V  F  Q  *  S  S  S  E  R  T  T  V  C  N  S  *  K  Y  T  L  S  W  A  *  I  S  T  *  I  Y  F  S  S  N  D  L  F  D  *  K  M  A  R  N  L  M  *  H  Q  H  C  F  L  D  H  E  L  S  F  I  V  W  K  F  W  I  V  T  M :   *  K  K  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128173" stop="128190"/>
                    <exon start="128271" stop="128377"/>
                    <exon start="129583" stop="129617"/>
                    <exon start="130266" stop="130333"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGHSDMSALFNFHSFLTVVLLGICTCTYVKMHFPALLEQRTGFRGFFWKAARIGERLSPWVAVGCLTMGVSIIFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="126019" e_stop="126231"/>
            <exon e_start="128146" e_stop="128190"/>
            <exon e_start="128271" e_stop="128377"/>
            <exon e_start="129583" e_stop="129617"/>
            <exon e_start="130266" e_stop="130528"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.330" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.835" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="126019" e_stop="126231" e_length="213"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.907">
            <gDNA_intron_boundary i_start="126232" i_stop="128145" i_length="1914"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="128146" e_stop="128190" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.955">
            <gDNA_intron_boundary i_start="128191" i_stop="128270" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128271" e_stop="128377" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.330">
            <gDNA_intron_boundary i_start="128378" i_stop="129582" i_length="1205"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="129583" e_stop="129617" e_length="35"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="0.835">
            <gDNA_intron_boundary i_start="129618" i_stop="130265" i_length="648"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="130266" e_stop="130528" e_length="263"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126019" stop="126231"/>
              <exon start="128146" stop="128190"/>
              <exon start="128271" stop="128377"/>
              <exon start="129583" stop="129617"/>
              <exon start="130266" stop="130516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130309" stop="130528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130309" stop="130528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130309" stop="130528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130309" stop="130528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234998" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCCATTGCTTAAATCTTCTTCATCCTTCCGACTCATAGATTTTCTCAAGCTTATTTGGTTATCGAGAGGTGGCTTAGCTTGAGTTTACTCTCCATTGTTGTATTCTCCGAGATCGGAGATAAACGGATTGGATCTGGAGATCAGATACTGTTTTAAAAATCCTCATTTTTCATATATTCACTGCAATTTCGCTTTAGGATCTTGATTTAAG : GCTTGGTGGAAGGCAAAACTGATTTAGAGAGGGCATTCAGATATG : TCGGCACTCTTCAATTTCCACTCCTTTTTGACAGTAGTGCTGTTAGGGATTTGTACATGCACTTATGTGAAGATGCATTTTCCTGCACTACTTGAACAGAGAACTGG : GTTTCGAGGTTTCTTTTGGAAGGCTGCTAGAATAG : GTGAACGGTTGAGTCCTTGGGTGGCAGTGGGCTGCTTGACGATGGGTGTTTCAATAATCTTCTTCTGAGAGAACAACTGTTTGCAATTCATGAAAGTACACTCTCAGCTGGGCTTAAATTAGCACTTGAATCTATTTTTCATCAAATGATCTGTTCGATTAAAAGATGGCACGAAACTTGATGTGACACCAACACTGCTTTCTTGATCATGAACTGAGTTTTATCGTGTGGAAATTTTGGATTGTGACAATGTTCGACTCTCT</gDNA_template>
            <first_frame> F  P  L  L  K  S  S  S  S  F  R  L  I  D  F  L  K  L  I  W  L  S  R  G  G  L  A  *  V  Y  S  P  L  L  Y  S  P  R  S  E  I  N  G  L  D  L  E  I  R  Y  C  F  K  N  P  H  F  S  Y  I  H  C  N  F  A  L  G  S  *  F  K  :  A  W  W  K  A  K  L  I  *  R  G  H  S  D  M  :  S  A  L  F  N  F  H  S  F  L  T  V  V  L  L  G  I  C  T  C  T  Y  V  K  M  H  F  P  A  L  L  E  Q  R  T  G :   F  R  G  F  F  W  K  A  A  R  I   : G  E  R  L  S  P  W  V  A  V  G  C  L  T  M  G  V  S  I  I  F  F  *  E  N  N  C  L  Q  F  M  K  V  H  S  Q  L  G  L  N  *  H  L  N  L  F  F  I  K  *  S  V  R  L  K  D  G  T  K  L  D  V  T  P  T  L  L  S  *  S  *  T  E  F  Y  R  V  E  I  L  D  C  D  N  V  R  L  S </first_frame>
            <second_frame>  F  H  C  L  N  L  L  H  P  S  D  S  *  I  F  S  S  L  F  G  Y  R  E  V  A  *  L  E  F  T  L  H  C  C  I  L  R  D  R  R  *  T  D  W  I  W  R  S  D  T  V  L  K  I  L  I  F  H  I  F  T  A  I  S  L  *  D  L  D  L  R :   L  G  G  R  Q  N  *  F  R  E  G  I  Q  I  C :   R  H  S  S  I  S  T  P  F  *  Q  *  C  C  *  G  F  V  H  A  L  M  *  R  C  I  F  L  H  Y  L  N  R  E  L   : G  F  E  V  S  F  G  R  L  L  E  *  :  V  N  G  *  V  L  G  W  Q  W  A  A  *  R  W  V  F  Q  *  S  S  S  E  R  T  T  V  C  N  S  *  K  Y  T  L  S  W  A  *  I  S  T  *  I  Y  F  S  S  N  D  L  F  D  *  K  M  A  R  N  L  M  *  H  Q  H  C  F  L  D  H  E  L  S  F  I  V  W  K  F  W  I  V  T  M  F  D  S   </second_frame>
            <third_frame>   S  I  A  *  I  F  F  I  L  P  T  H  R  F  S  Q  A  Y  L  V  I  E  R  W  L  S  L  S  L  L  S  I  V  V  F  S  E  I  G  D  K  R  I  G  S  G  D  Q  I  L  F  *  K  S  S  F  F  I  Y  S  L  Q  F  R  F  R  I  L  I  *   : G  L  V  E  G  K  T  D  L  E  R  A  F  R  Y   : V  G  T  L  Q  F  P  L  L  F  D  S  S  A  V  R  D  L  Y  M  H  L  C  E  D  A  F  S  C  T  T  *  T  E  N  W  :  V  S  R  F  L  L  E  G  C  *  N  R :   *  T  V  E  S  L  G  G  S  G  L  L  D  D  G  C  F  N  N  L  L  L  R  E  Q  L  F  A  I  H  E  S  T  L  S  A  G  L  K  L  A  L  E  S  I  F  H  Q  M  I  C  S  I  K  R  W  H  E  T  *  C  D  T  N  T  A  F  L  I  M  N  *  V  L  S  C  G  N  F  G  L  *  Q  C  S  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128173" stop="128190"/>
                    <exon start="128271" stop="128377"/>
                    <exon start="129583" stop="129617"/>
                    <exon start="130266" stop="130333"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGHSDMSALFNFHSFLTVVLLGICTCTYVKMHFPALLEQRTGFRGFFWKAARIGERLSPWVAVGCLTMGVSIIFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="132794" PGL_stop="133761"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132794" e_stop="132950"/>
            <exon e_start="133298" e_stop="133761"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="132794" e_stop="132950" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="132951" i_stop="133297" i_length="347"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="133298" e_stop="133761" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132794" stop="132950"/>
              <exon start="133298" stop="133583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132822" stop="132950"/>
              <exon start="133298" stop="133761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGACTTGTCTTCTTCATTTGGCACTTCTGTGTGCAGATAATTAAGTAACTACACTGAATCTCAGTTTGGTAACTCACATACCATGGAGATATCACAAAGTTGGAGCAAAATTAGTCCTCAGCTCCATAGCTCACACTCCTTGGAGATTTCATTAG : GAGAAAGAGGGCATCTACTAGCAGTGGAAATGAATGATATTAAAGGTGCAACAGAAACTAAGATTGAGGTTAGGGAACTGAACAAGGTATCAGATAAGGGTGATTCTATACTGAAGAGTGTTAGAGTTGACATAACAAGAGGAGTAATCATGGGGATTATTGGCCCCAGTGGTAGCGGAAAATCAACAATTTTACGAGCGCTAAATCGATTATGGGAACCCCTAAGGGCACTGTTTTTCTTGATGGTACTGATATTTGTGATCTGGATGTGCTCTGTCTTCGTCGTAAGGTTGGCATGTTGTTCCAGCTTCCAGTTCTCTTTGAAGGTATGGTTGTTAAATTGCTAAGATCAAACTAAAAACGCTAACCTATTAGTAAATTAGACAGACTTGAACTTGACCAATTTGAAAGTTCACTGTGTCTGATACAATCACAGTAACTACTGATGCTTGATTCATGAATAT</gDNA_template>
            <first_frame> K  D  L  S  S  S  F  G  T  S  V  C  R  *  L  S  N  Y  T  E  S  Q  F  G  N  S  H  T  M  E  I  S  Q  S  W  S  K  I  S  P  Q  L  H  S  S  H  S  L  E  I  S  L   : G  E  R  G  H  L  L  A  V  E  M  N  D  I  K  G  A  T  E  T  K  I  E  V  R  E  L  N  K  V  S  D  K  G  D  S  I  L  K  S  V  R  V  D  I  T  R  G  V  I  M  G  I  I  G  P  S  G  S  G  K  S  T  I  L  R  A  L  N  R  L  W  E  P  L  R  A  L  F  F  L  M  V  L  I  F  V  I  W  M  C  S  V  F  V  V  R  L  A  C  C  S  S  F  Q  F  S  L  K  V  W  L  L  N  C  *  D  Q  T  K  N  A  N  L  L  V  N  *  T  D  L  N  L  T  N  L  K  V  H  C  V  *  Y  N  H  S  N  Y  *  C  L  I  H  E  Y </first_frame>
            <second_frame>  K  T  C  L  L  H  L  A  L  L  C  A  D  N  *  V  T  T  L  N  L  S  L  V  T  H  I  P  W  R  Y  H  K  V  G  A  K  L  V  L  S  S  I  A  H  T  P  W  R  F  H  *  :  E  K  E  G  I  Y  *  Q  W  K  *  M  I  L  K  V  Q  Q  K  L  R  L  R  L  G  N  *  T  R  Y  Q  I  R  V  I  L  Y  *  R  V  L  E  L  T  *  Q  E  E  *  S  W  G  L  L  A  P  V  V  A  E  N  Q  Q  F  Y  E  R  *  I  D  Y  G  N  P  *  G  H  C  F  S  *  W  Y  *  Y  L  *  S  G  C  A  L  S  S  S  *  G  W  H  V  V  P  A  S  S  S  L  *  R  Y  G  C  *  I  A  K  I  K  L  K  T  L  T  Y  *  *  I  R  Q  T  *  T  *  P  I  *  K  F  T  V  S  D  T  I  T  V  T  T  D  A  *  F  M  N   </second_frame>
            <third_frame>   R  L  V  F  F  I  W  H  F  C  V  Q  I  I  K  *  L  H  *  I  S  V  W  *  L  T  Y  H  G  D  I  T  K  L  E  Q  N  *  S  S  A  P  *  L  T  L  L  G  D  F  I  R :   R  K  R  A  S  T  S  S  G  N  E  *  Y  *  R  C  N  R  N  *  D  *  G  *  G  T  E  Q  G  I  R  *  G  *  F  Y  T  E  E  C  *  S  *  H  N  K  R  S  N  H  G  D  Y  W  P  Q  W  *  R  K  I  N  N  F  T  S  A  K  S  I  M  G  T  P  K  G  T  V  F  L  D  G  T  D  I  C  D  L  D  V  L  C  L  R  R  K  V  G  M  L  F  Q  L  P  V  L  F  E  G  M  V  V  K  L  L  R  S  N  *  K  R  *  P  I  S  K  L  D  R  L  E  L  D  Q  F  E  S  S  L  C  L  I  Q  S  Q  *  L  L  M  L  D  S  *  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132836" stop="132950"/>
                    <exon start="133298" stop="133644"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSNYTESQFGNSHTMEISQSWSKISPQLHSSHSLEISLGERGHLLAVEMNDIKGATETKIEVRELNKVSDKGDSILKSVRVDITRGVIMGIIGPSGSGKSTILRALNRLWEPLRALFFLMVLIFVIWMCSVFVVRLACCSSFQFSLKVWLLNC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="134630" PGL_stop="134112"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134630" e_stop="134112"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="134630" e_stop="134112" e_length="519"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134630" stop="134112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257865" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAATTTGAGTACATGTTGAAGTTTTAGAGAATATCATTCTTGGTGATATTAATTCATATTTCTATTTAAAACCTTTACAAGAATTTGCCCCGTTTTTCTTGGTTGCGCCATCGGAAAGATTGTCGTGGGAGGTAAAATACCTTTTTTATTAAAGTGTATTTTTCTACACGTAGTTTCAGTAGCTAAATTAACCTCAGTTAAGATTGGCTCACTCGAATGGGTTGAGATTCTTCCATATTTTGGTGACTTGAATCTCTCTTGCTAACCATTATCATGCTTCTCCGCTAGTTCGTGCCTTGATGTACTTTCCTTGTCCCTGGTTCTACTTTTCGCCTAAAATACACTAGGAGCTGAGTTGAAGAAATCTTAGTGCCATGGGATGCTTAGCTTCAGAGAGTTGATCAGGCTTTATAATTTCCACAATCTCCCCATCAACCAGCAGGCACACTATATCAGCTATTCTCTGTATTTGCTTGATGCTATGAGAAACTATCACAATTGTCATCTTCTGATCCTTC</gDNA_template>
            <first_frame> L  I  *  V  H  V  E  V  L  E  N  I  I  L  G  D  I  N  S  Y  F  Y  L  K  P  L  Q  E  F  A  P  F  F  L  V  A  P  S  E  R  L  S  W  E  V  K  Y  L  F  Y  *  S  V  F  F  Y  T  *  F  Q  *  L  N  *  P  Q  L  R  L  A  H  S  N  G  L  R  F  F  H  I  L  V  T  *  I  S  L  A  N  H  Y  H  A  S  P  L  V  R  A  L  M  Y  F  P  C  P  W  F  Y  F  S  P  K  I  H  *  E  L  S  *  R  N  L  S  A  M  G  C  L  A  S  E  S  *  S  G  F  I  I  S  T  I  S  P  S  T  S  R  H  T  I  S  A  I  L  C  I  C  L  M  L  *  E  T  I  T  I  V  I  F  *  S  F </first_frame>
            <second_frame>  *  F  E  Y  M  L  K  F  *  R  I  S  F  L  V  I  L  I  H  I  S  I  *  N  L  Y  K  N  L  P  R  F  S  W  L  R  H  R  K  D  C  R  G  R  *  N  T  F  F  I  K  V  Y  F  S  T  R  S  F  S  S  *  I  N  L  S  *  D  W  L  T  R  M  G  *  D  S  S  I  F  W  *  L  E  S  L  L  L  T  I  I  M  L  L  R  *  F  V  P  *  C  T  F  L  V  P  G  S  T  F  R  L  K  Y  T  R  S  *  V  E  E  I  L  V  P  W  D  A  *  L  Q  R  V  D  Q  A  L  *  F  P  Q  S  P  H  Q  P  A  G  T  L  Y  Q  L  F  S  V  F  A  *  C  Y  E  K  L  S  Q  L  S  S  S  D  P   </second_frame>
            <third_frame>   N  L  S  T  C  *  S  F  R  E  Y  H  S  W  *  Y  *  F  I  F  L  F  K  T  F  T  R  I  C  P  V  F  L  G  C  A  I  G  K  I  V  V  G  G  K  I  P  F  L  L  K  C  I  F  L  H  V  V  S  V  A  K  L  T  S  V  K  I  G  S  L  E  W  V  E  I  L  P  Y  F  G  D  L  N  L  S  C  *  P  L  S  C  F  S  A  S  S  C  L  D  V  L  S  L  S  L  V  L  L  F  A  *  N  T  L  G  A  E  L  K  K  S  *  C  H  G  M  L  S  F  R  E  L  I  R  L  Y  N  F  H  N  L  P  I  N  Q  Q  A  H  Y  I  S  Y  S  L  Y  L  L  D  A  M  R  N  Y  H  N  C  H  L  L  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0309D09.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134577" stop="134365"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIFLFKTFTRICPVFLGCAIGKIVVGGKIPFLLKCIFLHVVSVAKLTSVKIGSLEWVEILPYFGDLNLSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="+" PGL_start="134652" PGL_stop="135641"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134652" e_stop="135641"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="134652" e_stop="135641" e_length="990"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134652" stop="135351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134652" stop="135228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134947" stop="135641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAACAAGTATAAAAAAAAGGGGGGAAAAGGCAACCCTAGTGCTGGAGTTGAACTCAGTTGGAAAGCAGCCCATACCTTCACCCTAAAAGTGGGATGAAATTTAAATCTGTTAACTCTGGTATCTCATTTACAAAGTCAGTTATCTCCTACACTTTGATGTAGACTTCACACAAATTTTTGTCACTTTGGGCTTTTGTTTTCTGTTTTATATTTTTGAAGCTCTTCCTGGGAACGCTCGAGCCTACACATCAAGTAAACAGACGCTTCAAGACTACTATTTATGATATCCAAAATTAACAGGCAAGATTAATGTATAATCATAATGATAATACCTCCATCGTAAATCAGCAACTTCACGATGTAAATCCCTCTCCCTGTCAAGAGCTGCCTCCAACTACAGAGAAAGAGAGAAGGGTGTTATATAGTATGTTGGATCCTCCAAGAAATAAAGAAACGAGAGAAATTATAGGATAGTAATTCCTGGTTATGGTTGAATTTGCGGAGGATGTCGCAACAAGATTAGTACAAATCCATACCAGTGATTTCTCTACTCCAGCTGAATTTGATGGATTACATCCTGCATCCATGGCAAGGTTAGCTGAACAGATGAAGTTAGACCTTTCATATAGATAAGATACACAAAAATTCAAGAGGCATTAGTTGCTGCACCTGTGGAGTCGGCCACTTGCCTCATTGCACTAAGAATACTCTCCTGTTAAAATAAAAACAGTTTTACAACGTTTCTAAGCAGAACAAAAAAACTTAGCAAGTCATAATTTTAGATCCATTCTTACTCTTCCAATAATAGTTGCCTGTAAAGCATTCTGCAACACTGGGAATATGGACTGGGAAGAATGATTAGCTGGTGTAGGATCACTCGGCAATGGTTGAGTAGCAGTCAGATTTTCTGGAGTCGCCTGCATAATCCATAACTTCTTTTCATAAAAACAATAAAGAAAACGGAAAAGAAGCTGAGATAAGATCAGTG</gDNA_template>
            <first_frame> R  N  K  Y  K  K  K  G  G  K  G  N  P  S  A  G  V  E  L  S  W  K  A  A  H  T  F  T  L  K  V  G  *  N  L  N  L  L  T  L  V  S  H  L  Q  S  Q  L  S  P  T  L  *  C  R  L  H  T  N  F  C  H  F  G  L  L  F  S  V  L  Y  F  *  S  S  S  W  E  R  S  S  L  H  I  K  *  T  D  A  S  R  L  L  F  M  I  S  K  I  N  R  Q  D  *  C  I  I  I  M  I  I  P  P  S  *  I  S  N  F  T  M  *  I  P  L  P  V  K  S  C  L  Q  L  Q  R  K  R  E  G  C  Y  I  V  C  W  I  L  Q  E  I  K  K  R  E  K  L  *  D  S  N  S  W  L  W  L  N  L  R  R  M  S  Q  Q  D  *  Y  K  S  I  P  V  I  S  L  L  Q  L  N  L  M  D  Y  I  L  H  P  W  Q  G  *  L  N  R  *  S  *  T  F  H  I  D  K  I  H  K  N  S  R  G  I  S  C  C  T  C  G  V  G  H  L  P  H  C  T  K  N  T  L  L  L  K  *  K  Q  F  Y  N  V  S  K  Q  N  K  K  T  *  Q  V  I  I  L  D  P  F  L  L  F  Q  *  *  L  P  V  K  H  S  A  T  L  G  I  W  T  G  K  N  D  *  L  V  *  D  H  S  A  M  V  E  *  Q  S  D  F  L  E  S  P  A  *  S  I  T  S  F  H  K  N  N  K  E  N  G  K  E  A  E  I  R  S  V </first_frame>
            <second_frame>  E  T  S  I  K  K  R  G  E  K  A  T  L  V  L  E  L  N  S  V  G  K  Q  P  I  P  S  P  *  K  W  D  E  I  *  I  C  *  L  W  Y  L  I  Y  K  V  S  Y  L  L  H  F  D  V  D  F  T  Q  I  F  V  T  L  G  F  C  F  L  F  Y  I  F  E  A  L  P  G  N  A  R  A  Y  T  S  S  K  Q  T  L  Q  D  Y  Y  L  *  Y  P  K  L  T  G  K  I  N  V  *  S  *  *  *  Y  L  H  R  K  S  A  T  S  R  C  K  S  L  S  L  S  R  A  A  S  N  Y  R  E  R  E  K  G  V  I  *  Y  V  G  S  S  K  K  *  R  N  E  R  N  Y  R  I  V  I  P  G  Y  G  *  I  C  G  G  C  R  N  K  I  S  T  N  P  Y  Q  *  F  L  Y  S  S  *  I  *  W  I  T  S  C  I  H  G  K  V  S  *  T  D  E  V  R  P  F  I  *  I  R  Y  T  K  I  Q  E  A  L  V  A  A  P  V  E  S  A  T  C  L  I  A  L  R  I  L  S  C  *  N  K  N  S  F  T  T  F  L  S  R  T  K  K  L  S  K  S  *  F  *  I  H  S  Y  S  S  N  N  S  C  L  *  S  I  L  Q  H  W  E  Y  G  L  G  R  M  I  S  W  C  R  I  T  R  Q  W  L  S  S  S  Q  I  F  W  S  R  L  H  N  P  *  L  L  F  I  K  T  I  K  K  T  E  K  K  L  R  *  D  Q   </second_frame>
            <third_frame>   K  Q  V  *  K  K  G  G  K  R  Q  P  *  C  W  S  *  T  Q  L  E  S  S  P  Y  L  H  P  K  S  G  M  K  F  K  S  V  N  S  G  I  S  F  T  K  S  V  I  S  Y  T  L  M  *  T  S  H  K  F  L  S  L  W  A  F  V  F  C  F  I  F  L  K  L  F  L  G  T  L  E  P  T  H  Q  V  N  R  R  F  K  T  T  I  Y  D  I  Q  N  *  Q  A  R  L  M  Y  N  H  N  D  N  T  S  I  V  N  Q  Q  L  H  D  V  N  P  S  P  C  Q  E  L  P  P  T  T  E  K  E  R  R  V  L  Y  S  M  L  D  P  P  R  N  K  E  T  R  E  I  I  G  *  *  F  L  V  M  V  E  F  A  E  D  V  A  T  R  L  V  Q  I  H  T  S  D  F  S  T  P  A  E  F  D  G  L  H  P  A  S  M  A  R  L  A  E  Q  M  K  L  D  L  S  Y  R  *  D  T  Q  K  F  K  R  H  *  L  L  H  L  W  S  R  P  L  A  S  L  H  *  E  Y  S  P  V  K  I  K  T  V  L  Q  R  F  *  A  E  Q  K  N  L  A  S  H  N  F  R  S  I  L  T  L  P  I  I  V  A  C  K  A  F  C  N  T  G  N  M  D  W  E  E  *  L  A  G  V  G  S  L  G  N  G  *  V  A  V  R  F  S  G  V  A  C  I  I  H  N  F  F  S  *  K  Q  *  R  K  R  K  R  S  *  D  K  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0309D09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 510 chains have been computed
$ 
$ memory statistics:
$ 666528 bytes spliced alignments in total
$ 220 spliced alignments have been stored
$ 3029 bytes was the average size of a spliced alignment
$ 43864 bytes predicted gene locations in total
$ 27 predicted gene locations have been stored
$ 1624 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 574 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 17:38:02
-->
