<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 23:44:01"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0315H13-s35oj/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0315H13-s35oj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0315H13-s35oj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7867" ref_strand="+" ref_description="SGN-M7867 C2_At3g24760 [cosii_markers]">
      <seq>ctactcctcacacagtcttcattttttttctataatctaaactaaaatcccacacactttatcaactcaataaaaaaaaacaatctttttcaaaaaccctcaatcaaaaaaacaatctttttcaaaacccctcaatcaaaaaaggatggaagaatccatttgtattcaaaaactcaattctcaaaatgaccaaaaaatcaagaattgggattttctttcttcagatcttactgaaaaaatcctctcatacctaccaattcgttctataattgttgcttcctctgtatgcaagatctggaattccatcatcacttcttcttctttcactaccaaaatctctgctacaaaaaagcagccatggctttttctctgtggccaaaacagcattttttacaacaataaccaaccatttgcttatgacccagatgccaatgagtggatttcacttcccacttcaacccttttgtcccaagatttctttattggttcaaatggttttttctttgctacaacttctgaaaatttcagttttaagcctatttttaatggaatttgggtccaaacaagccctttgaggttctccaggtgtaatcctcttgtgggtgtttacaatgaagggttaaatccaagattcattgttgttggtggggttagatttgttggtggattagttgatgttgaggatagattggctgttgagatttacaacccaaatcttgattattgggaactgtgcccacctttaccagcagattttaggtcagggaattcatcacagtggttatgttcagctntgttaagagataaattctactatgtttttgggatatattcttgttttattacatgtttcaatttggatgaacatgtgtggagtgaggtacaaacactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0315H13-s35oj/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0315H13.1" temp_strand="+" temp_description="C06HBa0315H13.1  AC211080.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0315H13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4254" stop="5640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4457" g_stop="4474" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="104" r_length="18" r_score="0.556"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4475" i_stop="4552" i_length="78">
            <donor d_prob="0.282" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4553" g_stop="5340" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="892" r_length="788" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0315H13.1" gen_strand="+" ref_id="SGN-M7867" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0315H13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4457" e_stop="4474"/>
          <exon e_start="4553" e_stop="5340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCACTATGCAACAAAGTAGGAAAACCAACTACTCCTCACATTTCTTTGTATAAAATCTAAACTAAGATCCTACACACTATATCAAATCATTAAAAAAAAAAAAATCTTTTTTCAAAACCCTTCAAT-AAAAAAGAATGGAAGAATCCATTTGTATTCAAAAACTCAATGTTCAAAATGACCAAAAAATAAAAAATTGGGATTTTCTTTCTTCAGATCTTACTGAAAAAATCCTGTCATACCTCCCAATTCGTTCTATAATTGTTGCTTCCTCTGTATGCAAGATCTGGAATTCCATAATCACTTCTTCTTCTTTCACTACCAAAATCTCTGCTACAAAAAAGCAGCCATGGCTTTTTCTCTGTGGCCAAAACAGTATTTTTTACAACAGTAATCAACCATTTGCTTATGACCCAGATGCTAATGAATGGTTCTCACTTCCCACTTCAACCCTTTTGTCCCAAGATTTCTTTTTTGGTTCAAATGGTTTTTTCTTTGCTACAACTTCAGAAAATTTCAGTTTTAAGCCTATTTTCAATGGAATTTGGGTCCAAACAAGTCCTTTGAGGTTCTCCAGGTGTAATCCTCTTGTGGGTGTTTACAATAAAGGGTTAAATCCAAAATTCATTGTTGTTGGTGGGGTTAGATTTGTTGGTGGTTTAGTTGATGTTGAGGATAGATTGGCTGTTGAGATTTATAACCCAAATCTTGATTATTGGGAATTGTGCCCACCTTTGCCTGCAGATTTTAGGTCAGGGAATTCATCACAGTGGTTATGTTCAGCCTTGTTAAGAGATAAATTCTACTATGTTTTTGGTATATATTCTTGTTTTATTACATGTTTGAATTTGGATGAACATTTGTGGAGTCAGGTACAAACACTT</genome_strand>
        <mrna_strand>TTTTCAAAAACCCTCAAT..............................................................................CAAAAAAACAATC-TTTTTCAAAACCCCTCAATCAAAAAAGGATGGAAGAATCCATTTGTATTCAAAAACTCAATTCTCAAAATGACCAAAAAATCAAGAATTGGGATTTTCTTTCTTCAGATCTTACTGAAAAAATCCTCTCATACCTACCAATTCGTTCTATAATTGTTGCTTCCTCTGTATGCAAGATCTGGAATTCCATCATCACTTCTTCTTCTTTCACTACCAAAATCTCTGCTACAAAAAAGCAGCCATGGCTTTTTCTCTGTGGCCAAAACAGCATTTTTTACAACAATAACCAACCATTTGCTTATGACCCAGATGCCAATGAGTGGATTTCACTTCCCACTTCAACCCTTTTGTCCCAAGATTTCTTTATTGGTTCAAATGGTTTTTTCTTTGCTACAACTTCTGAAAATTTCAGTTTTAAGCCTATTTTTAATGGAATTTGGGTCCAAACAAGCCCTTTGAGGTTCTCCAGGTGTAATCCTCTTGTGGGTGTTTACAATGAAGGGTTAAATCCAAGATTCATTGTTGTTGGTGGGGTTAGATTTGTTGGTGGATTAGTTGATGTTGAGGATAGATTGGCTGTTGAGATTTACAACCCAAATCTTGATTATTGGGAACTGTGCCCACCTTTACCAGCAGATTTTAGGTCAGGGAATTCATCACAGTGGTTATGTTCAGCTNTGTTAAGAGATAAATTCTACTATGTTTTTGGGATATATTCTTGTTTTATTACATGTTTCAATTTGGATGAACATGTGTGGAGTGAGGTACAAACACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0315H13-s35oj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M429-F" ref_strand="+" ref_description="SGN-M429-F TG215-F [rflp_markers_forward]">
      <seq>aaggtgggcacaattcccaataatcaagatttgggttataaatctcaacagccaatctatcctcaacatcaactaaaccaccaacaaatctaaccccaccaacaacaatgaattttggatttaaccctttattgtaaacacccacaagaggattacacctggagaacctcaaaggacttgtttggacccaaattccattgaaaataggcttaaaactgaaattttctgaagttgtagcaaagaaaaaaccatttgaaccaaaaaagaaatcttgggacaaaagggttgaagtgggaagtgagaaccattcattagcatctgggtcataagcaaatggttgattactgttgtaaaaaatactgttttggccacagagaaaaagccatggctgcttttttgtagcagagattttggtagtgaaagaagaagaagtgattatggaattccagatcttgcatacagaggaagcaacaattatagaacgaattgggaggtatgacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0315H13-s35oj/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0315H13.1" temp_strand="-" temp_description="C06HBa0315H13.1  AC211080.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0315H13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5491" stop="4389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5191" g_stop="4689" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0315H13.1" gen_strand="-" ref_id="SGN-M429-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0315H13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M429-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5191" e_stop="4689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTGGGCACAATTCCCAATAATCAAGATTTGGGTTATAAATCTCAACAGCCAATCTATCCTCAACATCAACTAAACCACCAACAAATCTAACCCCACCAACAACAATGAATTTTGGATTTAACCCTTTATTGTAAACACCCACAAGAGGATTACACCTGGAGAACCTCAAAGGACTTGTTTGGACCCAAATTCCATTGAAAATAGGCTTAAAACTGAAATTTTCTGAAGTTGTAGCAAAGAAAAAACCATTTGAACCAAAAAAGAAATCTTGGGACAAAAGGGTTGAAGTGGGAAGTGAGAACCATTCATTAGCATCTGGGTCATAAGCAAATGGTTGATTACTGTTGTAAAAAATACTGTTTTGGCCACAGAGAAAAAGCCATGGCTGCTTTTTTGTAGCAGAGATTTTGGTAGTGAAAGAAGAAGAAGTGATTATGGAATTCCAGATCTTGCATACAGAGGAAGCAACAATTATAGAACGAATTGGGAGGTATGACAGG</genome_strand>
        <mrna_strand>AAGGTGGGCACAATTCCCAATAATCAAGATTTGGGTTATAAATCTCAACAGCCAATCTATCCTCAACATCAACTAAACCACCAACAAATCTAACCCCACCAACAACAATGAATTTTGGATTTAACCCTTTATTGTAAACACCCACAAGAGGATTACACCTGGAGAACCTCAAAGGACTTGTTTGGACCCAAATTCCATTGAAAATAGGCTTAAAACTGAAATTTTCTGAAGTTGTAGCAAAGAAAAAACCATTTGAACCAAAAAAGAAATCTTGGGACAAAAGGGTTGAAGTGGGAAGTGAGAACCATTCATTAGCATCTGGGTCATAAGCAAATGGTTGATTACTGTTGTAAAAAATACTGTTTTGGCCACAGAGAAAAAGCCATGGCTGCTTTTTTGTAGCAGAGATTTTGGTAGTGAAAGAAGAAGAAGTGATTATGGAATTCCAGATCTTGCATACAGAGGAAGCAACAATTATAGAACGAATTGGGAGGTATGACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0315H13-s35oj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7243" ref_strand="+" ref_description="SGN-M7243 C2_At2g20220 [cosii_markers]">
      <seq>gaaaaaaaaacttgttttcctccttggtaatcataaccctttttccattttgctgttaaattcttgctagtataatttatctttaattatttgtttcatttttttcgcattttgtacatgaatttttgcaaccccatttgtaaaaattcgcagctttatggagtagtatttatcttagggttgtgaaaacatgggggaaattgaagttccatcattagttaacttatgcatttactcaattagagatgaactcattcaagttgatgatcttaatctttcatcagtattgtatcaccttcctacggagttgttcgatcagttgctgtcgcagttacctccattggcattgcagaaattacaacaagggaaatctgatatcttggatgattatgagcttttgactgacggtgttgataatcagagaaagcgtaaaagatttctgaattttgaggaagagtggaaaaatctgtatgaagctcggtggcctgcttttggttggaggagtaagaatttcaagagtaagtcatctgccagatcagcaaacgaaaaagaagtagagtgtgaatccgcaaatgactggcaacagatgtattgggaagcacatttgcagaattgcctggatacaacagcagagtttgctttattcccatcttttcatggtcggattagtgaaatggaagttccagaatcaatccttaactatattgatcataggggacacatcagtagattcacctgtgactattccaagttcgcttatcactgccaacaatttgggtcgtatgccaggcacctgagattgccaaatgttctgtgtgtggaagaaacttgtctattacttagaaatgcaaggttggagagtttggaattacaatggattaagtctgttgagcatgtcgaggggttatgcaaactcatcagccagaactatcgatccctaaagtcaattaaattcatgcattgcaagtttacagtttcttctcttgatgcaatttgtgacttgctatgcatgcacagtcctcaagcacttgggatgcaacatttctcaatcaagacatcaagcttcctagagaacaactttcaatccttgccagctggactaatatctttgctatcatcagggaagtccttgtcttcactatgcttatcagacaaccatcttcctcgccattttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0315H13-s35oj/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0315H13.1" temp_strand="+" temp_description="C06HBa0315H13.1  AC211080.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0315H13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27087" stop="32285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27410" g_stop="27573" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="260" r_length="174" r_score="0.805"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27574" i_stop="27665" i_length="92">
            <donor d_prob="0.899" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27666" g_stop="27771" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="366" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27772" i_stop="29149" i_length="1378">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29150" g_stop="29218" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="435" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29219" i_stop="29381" i_length="163">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29382" g_stop="29558" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="612" r_length="177" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29559" i_stop="29663" i_length="105">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29664" g_stop="29737" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="686" r_length="74" r_score="0.946"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29738" i_stop="30194" i_length="457">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.943" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30195" g_stop="30297" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="789" r_length="103" r_score="0.942"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30298" i_stop="30694" i_length="397">
            <donor d_prob="0.649" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30695" g_stop="30737" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="790" r_stop="832" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30738" i_stop="31095" i_length="358">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31096" g_stop="31158" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="833" r_stop="895" r_length="63" r_score="0.905"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="31159" i_stop="31534" i_length="376">
            <donor d_prob="0.334" d_score="0.90"/>
            <acceptor a_prob="0.905" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="31535" g_stop="31764" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="896" r_stop="1125" r_length="230" r_score="0.974"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="31765" i_stop="31934" i_length="170">
            <donor d_prob="0.913" d_score="0.94"/>
            <acceptor a_prob="0.474" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="31935" g_stop="31985" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1126" r_stop="1176" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0315H13.1" gen_strand="+" ref_id="SGN-M7243" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>1080</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0315H13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27410" e_stop="27573"/>
          <exon e_start="27666" e_stop="27771"/>
          <exon e_start="29150" e_stop="29218"/>
          <exon e_start="29382" e_stop="29558"/>
          <exon e_start="29664" e_stop="29737"/>
          <exon e_start="30195" e_stop="30297"/>
          <exon e_start="30695" e_stop="30737"/>
          <exon e_start="31096" e_stop="31158"/>
          <exon e_start="31535" e_stop="31764"/>
          <exon e_start="31935" e_stop="31985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTTATTTTATTTTTTTCGCATTTTGTATATGAATTTTCGGAACCCCATTTGTAAAAA-----A-----ATGGAGTAGTATGTATCTTAGGGTTGTGAGAAAATGGGGGAAATTAAAGTTCCATCATTAGTTGACTTGTGCATTTACTCAATTAGAGATGAACTCATTCAAGGTAATTGTTTGTGTTGTTTATGGGAATCATAATTTTTGTTATTATATATTTTGCTATTGCTTAACATTTTTTGTTTTGGTTTTTATTTTCAGTTGATGATCTTAATCTTTCATCAGTATTGTATCGCCTTCCTACGGAGTTGTTCGATCAGTTGCTGTTGCAGTTACCTCCGTTGGCATTGCAGAAATTACAACAAGGGTTTTTATCTCAGCACTCTATTATAGATTATATATGTTTCTTTAAACAATTTTTGTTAATCGTGGTGTCTGTGTCCGCTTGTGTACACCCTGATTGATTCTATCAGGTACCTGCTGCCTCTCGCCAGCTCAGGTACCGGTAATATCCACCAAGGCTTGGATGGTGGAAAGAATTCACTTAGTATTTCTTGCCTCTTACGTGAGATTTGAACTTGAGACATCATAGTTTTCAACGGATTTCATTAAACTATAGGAATTTTGAGAATCCCTATATTTGGAGAACCCTTTTGAGTATTGGATTGCAAGATAGGTTGTTAGATCAACTATGCTATATATTATATGTGTTTTTACCAAACATATTTTTATCCTAAAATATTTTTTTGCTGTGGGTGGTGGATTAGTGGTGGTTAAATTAAATCGACCCTCATTCTTTATCACTGCAACAACAGCGTGAGCTTACACTAGAAGCCAAATTCACATAGCCGGAGTTATTAAAAGATCCCTATATTTATTTTTCTAATAACCGCGGTGTCTGTGCGACTTTGCTTTGCATCTCAACTAATTCCACGAGGTATAGGTACCAGTAAAAATTTTTCCACCAAGGCTTGGGTAGATGAGAAGATACCGCATCGTGTTTTTTTGCTTCCGTTGAGATTTGAACCTGAGGCATCACAGTTTTGAACCCACTTCATTTAACTATTGGAACTTTGAGACTCCTATATTCGGAGAACCCCTGTGTGTTTTTAATGAGAAGTAATTGAGTTTTGGATTGGAAGTGGCTCCATTGGAGCTGAATGGATATTGAAATTCATACTGCTGACTGACTAGTTTGGGATTGACCACATTGTAGAGCCTTATTTAAAATAGCTGTGACTTAATTATCCACATTGTACGTTCAAAAGCATGAATATAATTACTTATCTCCATTTTGATATGCTTTTTATTGAGTTGAGGGTCTTTGTAACCTCTCCACCTCCCAAGGTTGGTTAAGGTCTGCACATACTCTACCCTCCCCAAGCCCTACCCATGGGATTACACTGAGTATGTTGTTGTTACTCTCAGAGAATACTTCTGCTCTCAAAAATCTATTCTCTCTTTTAATCTACTGAAAGCTCTTTTGTAATTACTTCTAAACCAAAAGGCCATGAATAAAAGACGTATAGTTTGAAACTTTTGGTGCATCTGACAGTTTGAGGAATTGGTTTTGAATTAAGTGTGATGAAGCTAGTTAACTGTGAATTGATCAACATTTTAGGTAGATCATATGTATAACTGATATAGGTGGTTGATATTATTTAGGTTTTTTTATATGAACCTTTATGTAGTGGGAGGGGTGCATTATAGTGCCTGAACTTTAACCAGAAAATCTTGTGTTGCAGGAAATCTGTTATCTTGGATGATCATGAGCTTTTGACTGACGGTGTTGATAATCAGAGAAAGCGTAAAAGGTCTGCATCTGTAGAAATATAGGAATTAAGTGAGTTTTTTTCAGCTTCCTGGTCATAAAGAAAGAGTATGTTACATCATGGGTAATATTTGTAGAGGTTGCCTGGATATACATGATCTGCAAATGATTCTATTGTGAATGGAGCTTGAAATATATTTCTGCAGATATCTGAATTTTGAGGAAGAGTGGAAAAATCTGTATGAAGCTCGGTGGCCTGCTTTTGGTTGGAGGAGTAAGAATTTCAGGAGTCAGTCATCTGCCAGATCAGCAAACCAAAAAGAAGTAGAGTGTGAATCCGCAAATGACTGGCAACAGATGTATTGGGAAGCACATTTGCAGAAGTATGAACATCAAATGATCTACTTATTGGTGGTTACCAGTTACCACTATTTTAAATGGCTTCAGTTCACCTGTCATTTTAAAATTCTACATTTTTTGAGGAACAGTTGCCTGGATACAGCAGCAGAGTTGACTTTATTCCCATCTTTTCATGGTCGGATTAGTGAAATAGAAGTTCCAGGTAAGAGATTCATGTTGATTGATGTCTCTTATCATCCATCACACTACTTTCTGGCAATCATTTTTTGGCAGCCATGCCCAGATTCTTCTTCATGCATCCTCTTTTAGATGCTGTCTTGGGTTGAAATCTAATTTTTATATTGAACATTCAAATCCTCTGATGGGGTAACTTTTCTTTCTTCCTTTTCTTCTTGTCTATTTGGGTAAGGATTAAGGAATATTTTATACACACATTACGTGAAAGCTATATTTTGGACAAAGGGTTTAAATTGGATTTTGAAGAAGTTTGCATCTTTTCATATGCCTTTGTTTTGTCTATATTTTTGTATCACAAGTAGTATTTGTATGCAGAAGTCTTTCCCTGTTCTGGAAAAAATGTAACTCAAGAAAGTTCCACAAAAATGCCCTAAACTAGCCATAGAAGATTTAGTTGATACAAGCTTCTTTTGTTTGTGCAGAATCAATCTTAAACTATATTGATCATAGGGGAGGCATCAGTAGATTCACCTGTGACTATTCCAAGTTCGCTTATCATTGCCAACAATTTGGATCGTATGCCAGGTGTATTTTTACAAAAAAAATTAATTCTGCAGGTGTTATCTCTTCGGAGGACAATGAGCCTCATGACAGAAATATTATTAAATGCCATATGCAAATAAATGTTCCTATTATTCTGAGTCATCATCTTGAACACTGCATTTGTGAAGTTTCATTGAAGGTTGAAACTGGTGTTCTCTCCTCTGCAGTTTTGTACTTTCTTTTCCTTTTTTTCCTCCTTGAAACAGGGTGTGTGCAGAGTAAGTGGTTGTTTTGAACATTAAAAGCACAAATTTGAGCCTTCAAGTGCATTTAGACCCTTCATTGCAAATGATATGTGCAGCTACATATTGTGTTTCAACTACCTTTCTTGATGTTCTCAAACATAACTCATTTTTTAATTACATTTGTTTGATTGCAGGCACCTGAGATTGCCAAATGTTCTGTGTGTGGAAGAAACTTGTGTAAGTTGTAGTGTTGCACGTACTGTGCTCTATATGTTCTCTATTTCCAATTGAAAGTCCAATTTGACTTTCTAAGATCAAGCAGGGCATTTTAATTTTTAAATTGAAATCATATATAAATGTTTAACTACTTGACGCAGATTAAAAAAAGCTTCTAATTGATGATACTTGTGTGAAATTTCAATTTCTAATTTTGTCGTCAAATAGAAAAAGAACGTTAAAAGCAAGTTAGGAAATGCTGGTTTAATGTATATTCAGGCATAACATTAAATATGCAGAGAAGAGATTAATTGATTTGATGACATATAAGGCTTCCTTTTGTTTGTCTACATTATTACCTTATATTTCTTTGTTGCAGCTTTTACTTAGAAATGCAAGGTTGGAGAGTTTGGAACTACAATGGATTAAGTCTTATATGCATGTAAGTTTAGTTCTTTTGTATATGTGCTGTACATCTTAGCTTTCAGGAAAAAGCAAAATTTACATGTAACAAAACTAAGAAGAGGAAAGATTAACCTGTAAGAAACTGTTTGACATAAGATTCAAGACATGCCATTGGCATCAGATCCTAATATATACTTTGACATACATTTATTTCTGGAATTCAAGTCAGAACTAAATGTGTGAAACATAATTGTTGTCTCAAGTGCTTGTGCATTTTCTGTTTGGCATCTGTAGTAATAATGAAATTTGCAAACGTTTCTTTGTTTTGAACAGTTATATCTTCTGGATTAGAACTTGTTATGCTGAAGAATTAACTATTTACACTGCTTTTCTTGTGGCTTTCAACCTTACAGGTCGAGGGGTTATGCAAACTCATCAGCCAGAACTATCGATCCCTTAAGTCAATTAAATTCATGCATTGCAAGTTTACAGTTTCTTCTCTTGATGCAATTTGTGACTTGCTATGCATGCACAATCCTCAAGCACTTGGGATGCAACATTTCTCAATCAAGACATCAAACTTCCTAGAGAACAACTTTCAATCCTCGCCAGCTGGACTGATATCTTTGCTATCATCAGGGAGGTATAGCGGATTTCGCTGCAGCTTCCATCAGCTTCTTTATTCAACTGTTCTATGCTTTATTCTCATAATGATTCCATAGACTTACATTCTGTGCGACATGGTAGATTCCATCTACTGTAACCCACTAAGTGATTCCATAGACTTACATTTGTGCATCGTGTTTCTGCTAGGTCCTTGTCTTCACTATGCTTATCAGACAACCATCTTCCTCGCCATTTTGC</genome_strand>
        <mrna_strand>TTATTTGTTTCATTTTTTTCGCATTTTGTACATGAATTTTTGCAACCCCATTTGTAAAAATTCGCAGCTTTATGGAGTAGTATTTATCTTAGGGTTGTGAAAACATGGGGGAAATTGAAGTTCCATCATTAGTTAACTTATGCATTTACTCAATTAGAGATGAACTCATTCAAG............................................................................................TTGATGATCTTAATCTTTCATCAGTATTGTATCACCTTCCTACGGAGTTGTTCGATCAGTTGCTGTCGCAGTTACCTCCATTGGCATTGCAGAAATTACAACAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCTGATATCTTGGATGATTATGAGCTTTTGACTGACGGTGTTGATAATCAGAGAAAGCGTAAAAG...................................................................................................................................................................ATTTCTGAATTTTGAGGAAGAGTGGAAAAATCTGTATGAAGCTCGGTGGCCTGCTTTTGGTTGGAGGAGTAAGAATTTCAAGAGTAAGTCATCTGCCAGATCAGCAAACGAAAAAGAAGTAGAGTGTGAATCCGCAAATGACTGGCAACAGATGTATTGGGAAGCACATTTGCAGAA.........................................................................................................TTGCCTGGATACAACAGCAGAGTTTGCTTTATTCCCATCTTTTCATGGTCGGATTAGTGAAATGGAAGTTCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAATCCTTAACTATATTGATCATAGGGGACACATCAGTAGATTCACCTGTGACTATTCCAAGTTCGCTTATCACTGCCAACAATTTGGGTCGTATGCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................GCACCTGAGATTGCCAAATGTTCTGTGTGTGGAAGAAACTTGT......................................................................................................................................................................................................................................................................................................................................................................CTATTACTTAGAAATGCAAGGTTGGAGAGTTTGGAATTACAATGGATTAAGTCTGTTGAGCAT........................................................................................................................................................................................................................................................................................................................................................................................GTCGAGGGGTTATGCAAACTCATCAGCCAGAACTATCGATCCCTAAAGTCAATTAAATTCATGCATTGCAAGTTTACAGTTTCTTCTCTTGATGCAATTTGTGACTTGCTATGCATGCACAGTCCTCAAGCACTTGGGATGCAACATTTCTCAATCAAGACATCAAGCTTCCTAGAGAACAACTTTCAATCCTTGCCAGCTGGACTAATATCTTTGCTATCATCAGGGAA..........................................................................................................................................................................GTCCTTGTCTTCACTATGCTTATCAGACAACCATCTTCCTCGCCATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0315H13-s35oj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M586-F" ref_strand="+" ref_description="SGN-M586-F TG193-F [rflp_markers_forward]">
      <seq>ttttgtactttcttttcctttttttcctccttgaaacagggtgtgtgcagagtaagtggttgttttgaacattaaaagcacaaatttgagccttcaagtgcatttagacccttcattgcaaatgatatgtgcagctacatattgtgtttcaactacctttcttgatgttctcaaacataactcattttttaattacatttgtttgattgcaggcacctgagattgccaaatgttctgtgtgtggaagaaacttgtgtaagttgtagtgttgcacgtactgtgctctatatgttctctatttccaattgaaagtccaatttgactttctaagatcaagcagggcattttaatttttaaattgaaatcatatataaatgtttaactacttgacgcagattaaaaaaagcttctaattgatgatacttgtgtgaaatttcaatttctaattttgtcgtcaaatagaaaaagaacgttaaaagcaagttaggaaatgctggtttaatgtatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0315H13-s35oj/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0315H13.1" temp_strand="+" temp_description="C06HBa0315H13.1  AC211080.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0315H13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30183" stop="31292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30483" g_stop="30992" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0315H13.1" gen_strand="+" ref_id="SGN-M586-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0315H13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M586-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30483" e_stop="30992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTACTTTCTTTTCCTTTTTTTCCTCCTTGAAACAGGGTGTGTGCAGAGTAAGTGGTTGTTTTGAACATTAAAAGCACAAATTTGAGCCTTCAAGTGCATTTAGACCCTTCATTGCAAATGATATGTGCAGCTACATATTGTGTTTCAACTACCTTTCTTGATGTTCTCAAACATAACTCATTTTTTAATTACATTTGTTTGATTGCAGGCACCTGAGATTGCCAAATGTTCTGTGTGTGGAAGAAACTTGTGTAAGTTGTAGTGTTGCACGTACTGTGCTCTATATGTTCTCTATTTCCAATTGAAAGTCCAATTTGACTTTCTAAGATCAAGCAGGGCATTTTAATTTTTAAATTGAAATCATATATAAATGTTTAACTACTTGACGCAGATTAAAAAAAGCTTCTAATTGATGATACTTGTGTGAAATTTCAATTTCTAATTTTGTCGTCAAATAGAAAAAGAACGTTAAAAGCAAGTTAGGAAATGCTGGTTTAATGTATATT</genome_strand>
        <mrna_strand>TTTTGTACTTTCTTTTCCTTTTTTTCCTCCTTGAAACAGGGTGTGTGCAGAGTAAGTGGTTGTTTTGAACATTAAAAGCACAAATTTGAGCCTTCAAGTGCATTTAGACCCTTCATTGCAAATGATATGTGCAGCTACATATTGTGTTTCAACTACCTTTCTTGATGTTCTCAAACATAACTCATTTTTTAATTACATTTGTTTGATTGCAGGCACCTGAGATTGCCAAATGTTCTGTGTGTGGAAGAAACTTGTGTAAGTTGTAGTGTTGCACGTACTGTGCTCTATATGTTCTCTATTTCCAATTGAAAGTCCAATTTGACTTTCTAAGATCAAGCAGGGCATTTTAATTTTTAAATTGAAATCATATATAAATGTTTAACTACTTGACGCAGATTAAAAAAAGCTTCTAATTGATGATACTTGTGTGAAATTTCAATTTCTAATTTTGTCGTCAAATAGAAAAAGAACGTTAAAAGCAAGTTAGGAAATGCTGGTTTAATGTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0315H13-s35oj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M586-R" ref_strand="+" ref_description="SGN-M586-R TG193-R [rflp_markers_reverse]">
      <seq>gaaatccgctatacctccctgatgatagcaaagatatcagtccagctggcgaggattgaaagttgttctctaggaagtttgatgtcttgattgagaaatgttgcatcccaagtgcttgaggattgtgcatgcatagcaagtcacaaattgcatcaagagaagaaactgtaaacttgcaatgcatgaatttaattgacttaagggatcgatagttctggctgatgagtttgcataacccctcgacctgtaaggttgaaagccacaagaaaagcagtgtaaatagttaattcttcagcataacaagttctaatccagaagatataactgttcaaaacaaagaaacgtttgcaaatttcattattactacagatgccaaacagaaaatgcacaagcacttgagacaacaattatgtttcacacatttagttctgacttgaattccagaaataaatgtatgtcaaagtatatattaggatctgatgccaatggcatgtcttgaatcttatgtcaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0315H13-s35oj/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0315H13.1" temp_strand="-" temp_description="C06HBa0315H13.1  AC211080.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0315H13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32078" stop="30965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31778" g_stop="31265" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0315H13.1" gen_strand="-" ref_id="SGN-M586-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0315H13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M586-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31778" e_stop="31265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCCGCTATACCTCCCTGATGATAGCAAAGATATCAGTCCAGCTGGCGAGGATTGAAAGTTGTTCTCTAGGAAGTTTGATGTCTTGATTGAGAAATGTTGCATCCCAAGTGCTTGAGGATTGTGCATGCATAGCAAGTCACAAATTGCATCAAGAGAAGAAACTGTAAACTTGCAATGCATGAATTTAATTGACTTAAGGGATCGATAGTTCTGGCTGATGAGTTTGCATAACCCCTCGACCTGTAAGGTTGAAAGCCACAAGAAAAGCAGTGTAAATAGTTAATTCTTCAGCATAACAAGTTCTAATCCAGAAGATATAACTGTTCAAAACAAAGAAACGTTTGCAAATTTCATTATTACTACAGATGCCAAACAGAAAATGCACAAGCACTTGAGACAACAATTATGTTTCACACATTTAGTTCTGACTTGAATTCCAGAAATAAATGTATGTCAAAGTATATATTAGGATCTGATGCCAATGGCATGTCTTGAATCTTATGTCAAACA</genome_strand>
        <mrna_strand>GAAATCCGCTATACCTCCCTGATGATAGCAAAGATATCAGTCCAGCTGGCGAGGATTGAAAGTTGTTCTCTAGGAAGTTTGATGTCTTGATTGAGAAATGTTGCATCCCAAGTGCTTGAGGATTGTGCATGCATAGCAAGTCACAAATTGCATCAAGAGAAGAAACTGTAAACTTGCAATGCATGAATTTAATTGACTTAAGGGATCGATAGTTCTGGCTGATGAGTTTGCATAACCCCTCGACCTGTAAGGTTGAAAGCCACAAGAAAAGCAGTGTAAATAGTTAATTCTTCAGCATAACAAGTTCTAATCCAGAAGATATAACTGTTCAAAACAAAGAAACGTTTGCAAATTTCATTATTACTACAGATGCCAAACAGAAAATGCACAAGCACTTGAGACAACAATTATGTTTCACACATTTAGTTCTGACTTGAATTCCAGAAATAAATGTATGTCAAAGTATATATTAGGATCTGATGCCAATGGCATGTCTTGAATCTTATGTCAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0315H13-s35oj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M130-R" ref_strand="+" ref_description="SGN-M130-R TG314-R [rflp_markers_reverse]">
      <seq>agtgcaagaaaactaaacaatcaactaaaaggaaatgaaattaagaaaatcagtgaatgcaaaatggtatgaagtaattgcattagacgttgaggctcaacatcctctgcgcgtgatttaaaaatatcattgtaacatctgtatacctagaaggttccttgcataatagttctttgtgttgaagcatgaagtataatttcattagacgttgaggctcaacatcctatgcgcatgagttaaggatatcaatgttgataacctagaaagttctttactggaaaagatagaaaatacttatgcattagagggcgagatcatatggaaagtaataaaaagaaaatggactaaaattgcttattttctgttatatataatacttttgaaagtgttttcttaatttctttctaaaattaagtggcaattttcattaaaaatatatttttttgtaaaattgatttttcaaaactatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0315H13-s35oj/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0315H13.1" temp_strand="+" temp_description="C06HBa0315H13.1  AC211080.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0315H13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64712" stop="65782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65012" g_stop="65482" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0315H13.1" gen_strand="+" ref_id="SGN-M130-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0315H13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M130-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65012" e_stop="65482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGCAAGAAAACTAAACAATCAACTAAAAGGAAATGAAATTAAGAAAATCAGTGAATGCAAAATGGTATGAAGTAATTGCATTAGACGTTGAGGCTCAACATCCTCTGCGCGTGATTTAAAAATATCATTGTAACATCTGTATACCTAGAAGGTTCCTTGCATAATAGTTCTTTGTGTTGAAGCATGAAGTATAATTTCATTAGACGTTGAGGCTCAACATCCTATGCGCATGAGTTAAGGATATCAATGTTGATAACCTAGAAAGTTCTTTACTGGAAAAGATAGAAAATACTTATGCATTAGAGGGCGAGATCATATGGAAAGTAATAAAAAGAAAATGGACTAAAATTGCTTATTTTCTGTTATATATAATACTTTTGAAAGTGTTTTCTTAATTTCTTTCTAAAATTAAGTGGCAATTTTCATTAAAAATATATTTTTTTGTAAAATTGATTTTTCAAAACTATAG</genome_strand>
        <mrna_strand>AGTGCAAGAAAACTAAACAATCAACTAAAAGGAAATGAAATTAAGAAAATCAGTGAATGCAAAATGGTATGAAGTAATTGCATTAGACGTTGAGGCTCAACATCCTCTGCGCGTGATTTAAAAATATCATTGTAACATCTGTATACCTAGAAGGTTCCTTGCATAATAGTTCTTTGTGTTGAAGCATGAAGTATAATTTCATTAGACGTTGAGGCTCAACATCCTATGCGCATGAGTTAAGGATATCAATGTTGATAACCTAGAAAGTTCTTTACTGGAAAAGATAGAAAATACTTATGCATTAGAGGGCGAGATCATATGGAAAGTAATAAAAAGAAAATGGACTAAAATTGCTTATTTTCTGTTATATATAATACTTTTGAAAGTGTTTTCTTAATTTCTTTCTAAAATTAAGTGGCAATTTTCATTAAAAATATATTTTTTTGTAAAATTGATTTTTCAAAACTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0315H13-s35oj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M130-F" ref_strand="+" ref_description="SGN-M130-F TG314-F [rflp_markers_forward]">
      <seq>tagcagatcatacgcataccaatttcacatttaatcacgccaattttatgaggtggatcaacatgcagctgaaactaaaataatataagaacctaaacgagaaaaaactggcagatcgattggccttgaaagaaaattaagttcggacttagtataaatatatagtttggagaagttccaaattatatttcttgtgttcaatcatacgcataccatttcgcaatcaatcacaccaataaactaaaattgttaatctatgagattcaaaacaactggtaaatcgatcagcccgaaatgaaaaaattaagttgcaaagtatgtcagtaccaaatcgatcttcatcattgaggcgctgatgttgagtgatttttccagctgaagaatttagggtttttggtggatgattaacagcggatttgaattttcgcctcattatgttgtgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0315H13-s35oj/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0315H13.1" temp_strand="-" temp_description="C06HBa0315H13.1  AC211080.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0315H13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66442" stop="65396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66142" g_stop="65696" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0315H13.1" gen_strand="-" ref_id="SGN-M130-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0315H13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M130-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66142" e_stop="65696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAGATCATACGCATACCAATTTCACATTTAATCACGCCAATTTTATGAGGTGGATCAACATGCAGCTGAAACTAAAATAATATAAGAACCTAAACGAGAAAAAACTGGCAGATCGATTGGCCTTGAAAGAAAATTAAGTTCGGACTTAGTATAAATATATAGTTTGGAGAAGTTCCAAATTATATTTCTTGTGTTCAATCATACGCATACCATTTCGCAATCAATCACACCAATAAACTAAAATTGTTAATCTATGAGATTCAAAACAACTGGTAAATCGATCAGCCCGAAATGAAAAAATTAAGTTGCAAAGTATGTCAGTACCAAATCGATCTTCATCATTGAGGCGCTGATGTTGAGTGATTTTTCCAGCTGAAGAATTTAGGGTTTTTGGTGGATGATTAACAGCGGATTTGAATTTTCGCCTCATTATGTTGTGATGAT</genome_strand>
        <mrna_strand>TAGCAGATCATACGCATACCAATTTCACATTTAATCACGCCAATTTTATGAGGTGGATCAACATGCAGCTGAAACTAAAATAATATAAGAACCTAAACGAGAAAAAACTGGCAGATCGATTGGCCTTGAAAGAAAATTAAGTTCGGACTTAGTATAAATATATAGTTTGGAGAAGTTCCAAATTATATTTCTTGTGTTCAATCATACGCATACCATTTCGCAATCAATCACACCAATAAACTAAAATTGTTAATCTATGAGATTCAAAACAACTGGTAAATCGATCAGCCCGAAATGAAAAAATTAAGTTGCAAAGTATGTCAGTACCAAATCGATCTTCATCATTGAGGCGCTGATGTTGAGTGATTTTTCCAGCTGAAGAATTTAGGGTTTTTGGTGGATGATTAACAGCGGATTTGAATTTTCGCCTCATTATGTTGTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4457" PGL_stop="5340"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4457" e_stop="4474"/>
            <exon e_start="4553" e_stop="5340"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.282" acc_prob="0.000" e_score="0.556"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.556">
            <gDNA_exon_boundary e_start="4457" e_stop="4474" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.282" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4475" i_stop="4552" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="0.952">
            <gDNA_exon_boundary e_start="4553" e_stop="5340" e_length="788"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4457" stop="4474"/>
              <exon start="4553" stop="5340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7867" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTCACTATGCAACAAA : AAAAAAAAAAATCTTTTTTCAAAACCCTTCAATAAAAAAGAATGGAAGAATCCATTTGTATTCAAAAACTCAATGTTCAAAATGACCAAAAAATAAAAAATTGGGATTTTCTTTCTTCAGATCTTACTGAAAAAATCCTGTCATACCTCCCAATTCGTTCTATAATTGTTGCTTCCTCTGTATGCAAGATCTGGAATTCCATAATCACTTCTTCTTCTTTCACTACCAAAATCTCTGCTACAAAAAAGCAGCCATGGCTTTTTCTCTGTGGCCAAAACAGTATTTTTTACAACAGTAATCAACCATTTGCTTATGACCCAGATGCTAATGAATGGTTCTCACTTCCCACTTCAACCCTTTTGTCCCAAGATTTCTTTTTTGGTTCAAATGGTTTTTTCTTTGCTACAACTTCAGAAAATTTCAGTTTTAAGCCTATTTTCAATGGAATTTGGGTCCAAACAAGTCCTTTGAGGTTCTCCAGGTGTAATCCTCTTGTGGGTGTTTACAATAAAGGGTTAAATCCAAAATTCATTGTTGTTGGTGGGGTTAGATTTGTTGGTGGTTTAGTTGATGTTGAGGATAGATTGGCTGTTGAGATTTATAACCCAAATCTTGATTATTGGGAATTGTGCCCACCTTTGCCTGCAGATTTTAGGTCAGGGAATTCATCACAGTGGTTATGTTCAGCCTTGTTAAGAGATAAATTCTACTATGTTTTTGGTATATATTCTTGTTTTATTACATGTTTGAATTTGGATGAACATTTGTGGAGTCAGGTACAAACACTT</gDNA_template>
            <first_frame> L  S  L  C  N  K  :  K  K  K  N  L  F  S  K  P  F  N  K  K  E  W  K  N  P  F  V  F  K  N  S  M  F  K  M  T  K  K  *  K  I  G  I  F  F  L  Q  I  L  L  K  K  S  C  H  T  S  Q  F  V  L  *  L  L  L  P  L  Y  A  R  S  G  I  P  *  S  L  L  L  L  S  L  P  K  S  L  L  Q  K  S  S  H  G  F  F  S  V  A  K  T  V  F  F  T  T  V  I  N  H  L  L  M  T  Q  M  L  M  N  G  S  H  F  P  L  Q  P  F  C  P  K  I  S  F  L  V  Q  M  V  F  S  L  L  Q  L  Q  K  I  S  V  L  S  L  F  S  M  E  F  G  S  K  Q  V  L  *  G  S  P  G  V  I  L  L  W  V  F  T  I  K  G  *  I  Q  N  S  L  L  L  V  G  L  D  L  L  V  V  *  L  M  L  R  I  D  W  L  L  R  F  I  T  Q  I  L  I  I  G  N  C  A  H  L  C  L  Q  I  L  G  Q  G  I  H  H  S  G  Y  V  Q  P  C  *  E  I  N  S  T  M  F  L  V  Y  I  L  V  L  L  H  V  *  I  W  M  N  I  C  G  V  R  Y  K  H   </first_frame>
            <second_frame>  C  H  Y  A  T  K :   K  K  K  I  F  F  Q  N  P  S  I  K  K  N  G  R  I  H  L  Y  S  K  T  Q  C  S  K  *  P  K  N  K  K  L  G  F  S  F  F  R  S  Y  *  K  N  P  V  I  P  P  N  S  F  Y  N  C  C  F  L  C  M  Q  D  L  E  F  H  N  H  F  F  F  F  H  Y  Q  N  L  C  Y  K  K  A  A  M  A  F  S  L  W  P  K  Q  Y  F  L  Q  Q  *  S  T  I  C  L  *  P  R  C  *  *  M  V  L  T  S  H  F  N  P  F  V  P  R  F  L  F  W  F  K  W  F  F  L  C  Y  N  F  R  K  F  Q  F  *  A  Y  F  Q  W  N  L  G  P  N  K  S  F  E  V  L  Q  V  *  S  S  C  G  C  L  Q  *  R  V  K  S  K  I  H  C  C  W  W  G  *  I  C  W  W  F  S  *  C  *  G  *  I  G  C  *  D  L  *  P  K  S  *  L  L  G  I  V  P  T  F  A  C  R  F  *  V  R  E  F  I  T  V  V  M  F  S  L  V  K  R  *  I  L  L  C  F  W  Y  I  F  L  F  Y  Y  M  F  E  F  G  *  T  F  V  E  S  G  T  N  T  </second_frame>
            <third_frame>   V  T  M  Q  Q   : K  K  K  K  S  F  F  K  T  L  Q  *  K  R  M  E  E  S  I  C  I  Q  K  L  N  V  Q  N  D  Q  K  I  K  N  W  D  F  L  S  S  D  L  T  E  K  I  L  S  Y  L  P  I  R  S  I  I  V  A  S  S  V  C  K  I  W  N  S  I  I  T  S  S  S  F  T  T  K  I  S  A  T  K  K  Q  P  W  L  F  L  C  G  Q  N  S  I  F  Y  N  S  N  Q  P  F  A  Y  D  P  D  A  N  E  W  F  S  L  P  T  S  T  L  L  S  Q  D  F  F  F  G  S  N  G  F  F  F  A  T  T  S  E  N  F  S  F  K  P  I  F  N  G  I  W  V  Q  T  S  P  L  R  F  S  R  C  N  P  L  V  G  V  Y  N  K  G  L  N  P  K  F  I  V  V  G  G  V  R  F  V  G  G  L  V  D  V  E  D  R  L  A  V  E  I  Y  N  P  N  L  D  Y  W  E  L  C  P  P  L  P  A  D  F  R  S  G  N  S  S  Q  W  L  C  S  A  L  L  R  D  K  F  Y  Y  V  F  G  I  Y  S  C  F  I  T  C  L  N  L  D  E  H  L  W  S  Q  V  Q  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0315H13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4588" stop="5340"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRMEESICIQKLNVQNDQKIKNWDFLSSDLTEKILSYLPIRSIIVASSVCKIWNSIITSSSFTTKISATKKQPWLFLCGQNSIFYNSNQPFAYDPDANEWFSLPTSTLLSQDFFFGSNGFFFATTSENFSFKPIFNGIWVQTSPLRFSRCNPLVGVYNKGLNPKFIVVGGVRFVGGLVDVEDRLAVEIYNPNLDYWELCPPLPADFRSGNSSQWLCSALLRDKFYYVFGIYSCFITCLNLDEHLWSQVQTL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="5191" PGL_stop="4689"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5191" e_stop="4689"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5191" e_stop="4689" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5191" stop="4689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M429-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGTGGGCACAATTCCCAATAATCAAGATTTGGGTTATAAATCTCAACAGCCAATCTATCCTCAACATCAACTAAACCACCAACAAATCTAACCCCACCAACAACAATGAATTTTGGATTTAACCCTTTATTGTAAACACCCACAAGAGGATTACACCTGGAGAACCTCAAAGGACTTGTTTGGACCCAAATTCCATTGAAAATAGGCTTAAAACTGAAATTTTCTGAAGTTGTAGCAAAGAAAAAACCATTTGAACCAAAAAAGAAATCTTGGGACAAAAGGGTTGAAGTGGGAAGTGAGAACCATTCATTAGCATCTGGGTCATAAGCAAATGGTTGATTACTGTTGTAAAAAATACTGTTTTGGCCACAGAGAAAAAGCCATGGCTGCTTTTTTGTAGCAGAGATTTTGGTAGTGAAAGAAGAAGAAGTGATTATGGAATTCCAGATCTTGCATACAGAGGAAGCAACAATTATAGAACGAATTGGGAGGTATGACAGG</gDNA_template>
            <first_frame> K  V  G  T  I  P  N  N  Q  D  L  G  Y  K  S  Q  Q  P  I  Y  P  Q  H  Q  L  N  H  Q  Q  I  *  P  H  Q  Q  Q  *  I  L  D  L  T  L  Y  C  K  H  P  Q  E  D  Y  T  W  R  T  S  K  D  L  F  G  P  K  F  H  *  K  *  A  *  N  *  N  F  L  K  L  *  Q  R  K  N  H  L  N  Q  K  R  N  L  G  T  K  G  L  K  W  E  V  R  T  I  H  *  H  L  G  H  K  Q  M  V  D  Y  C  C  K  K  Y  C  F  G  H  R  E  K  A  M  A  A  F  L  *  Q  R  F  W  *  *  K  K  K  K  *  L  W  N  S  R  S  C  I  Q  R  K  Q  Q  L  *  N  E  L  G  G  M  T   </first_frame>
            <second_frame>  R  W  A  Q  F  P  I  I  K  I  W  V  I  N  L  N  S  Q  S  I  L  N  I  N  *  T  T  N  K  S  N  P  T  N  N  N  E  F  W  I  *  P  F  I  V  N  T  H  K  R  I  T  P  G  E  P  Q  R  T  C  L  D  P  N  S  I  E  N  R  L  K  T  E  I  F  *  S  C  S  K  E  K  T  I  *  T  K  K  E  I  L  G  Q  K  G  *  S  G  K  *  E  P  F  I  S  I  W  V  I  S  K  W  L  I  T  V  V  K  N  T  V  L  A  T  E  K  K  P  W  L  L  F  C  S  R  D  F  G  S  E  R  R  R  S  D  Y  G  I  P  D  L  A  Y  R  G  S  N  N  Y  R  T  N  W  E  V  *  Q  </second_frame>
            <third_frame>   G  G  H  N  S  Q  *  S  R  F  G  L  *  I  S  T  A  N  L  S  S  T  S  T  K  P  P  T  N  L  T  P  P  T  T  M  N  F  G  F  N  P  L  L  *  T  P  T  R  G  L  H  L  E  N  L  K  G  L  V  W  T  Q  I  P  L  K  I  G  L  K  L  K  F  S  E  V  V  A  K  K  K  P  F  E  P  K  K  K  S  W  D  K  R  V  E  V  G  S  E  N  H  S  L  A  S  G  S  *  A  N  G  *  L  L  L  *  K  I  L  F  W  P  Q  R  K  S  H  G  C  F  F  V  A  E  I  L  V  V  K  E  E  E  V  I  M  E  F  Q  I  L  H  T  E  E  A  T  I  I  E  R  I  G  R  Y  D  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0315H13.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4890" stop="4693"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPFISIWVISKWLITVVKNTVLATEKKPWLLFCSRDFGSERRRSDYGIPDLAYRGSNNYRTNWEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="27410" PGL_stop="31985"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27410" e_stop="27573"/>
            <exon e_start="27666" e_stop="27771"/>
            <exon e_start="29150" e_stop="29218"/>
            <exon e_start="29382" e_stop="29558"/>
            <exon e_start="29664" e_stop="29737"/>
            <exon e_start="30195" e_stop="30297"/>
            <exon e_start="30695" e_stop="30737"/>
            <exon e_start="31096" e_stop="31158"/>
            <exon e_start="31535" e_stop="31764"/>
            <exon e_start="31935" e_stop="31985"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.899" acc_prob="0.985" e_score="0.805"/>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="0.972"/>
          <exon-intron don_prob="0.000" acc_prob="0.994" e_score="0.971"/>
          <exon-intron don_prob="0.917" acc_prob="0.788" e_score="0.977"/>
          <exon-intron don_prob="0.988" acc_prob="0.943" e_score="0.946"/>
          <exon-intron don_prob="0.649" acc_prob="0.999" e_score="0.942"/>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.334" acc_prob="0.905" e_score="0.905"/>
          <exon-intron don_prob="0.913" acc_prob="0.474" e_score="0.974"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.805">
            <gDNA_exon_boundary e_start="27410" e_stop="27573" e_length="164"/>
          </exon>
          <intron i_serial="1" don_prob="0.899" acc_prob="0.985">
            <gDNA_intron_boundary i_start="27574" i_stop="27665" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="27666" e_stop="27771" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="27772" i_stop="29149" i_length="1378"/>
          </intron>
          <exon e_serial="3" e_score="0.971">
            <gDNA_exon_boundary e_start="29150" e_stop="29218" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="29219" i_stop="29381" i_length="163"/>
          </intron>
          <exon e_serial="4" e_score="0.977">
            <gDNA_exon_boundary e_start="29382" e_stop="29558" e_length="177"/>
          </exon>
          <intron i_serial="4" don_prob="0.917" acc_prob="0.788">
            <gDNA_intron_boundary i_start="29559" i_stop="29663" i_length="105"/>
          </intron>
          <exon e_serial="5" e_score="0.946">
            <gDNA_exon_boundary e_start="29664" e_stop="29737" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.943">
            <gDNA_intron_boundary i_start="29738" i_stop="30194" i_length="457"/>
          </intron>
          <exon e_serial="6" e_score="0.942">
            <gDNA_exon_boundary e_start="30195" e_stop="30297" e_length="103"/>
          </exon>
          <intron i_serial="6" don_prob="0.649" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30298" i_stop="30694" i_length="397"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="30695" e_stop="30737" e_length="43"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="30738" i_stop="31095" i_length="358"/>
          </intron>
          <exon e_serial="8" e_score="0.905">
            <gDNA_exon_boundary e_start="31096" e_stop="31158" e_length="63"/>
          </exon>
          <intron i_serial="8" don_prob="0.334" acc_prob="0.905">
            <gDNA_intron_boundary i_start="31159" i_stop="31534" i_length="376"/>
          </intron>
          <exon e_serial="9" e_score="0.974">
            <gDNA_exon_boundary e_start="31535" e_stop="31764" e_length="230"/>
          </exon>
          <intron i_serial="9" don_prob="0.913" acc_prob="0.474">
            <gDNA_intron_boundary i_start="31765" i_stop="31934" i_length="170"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="31935" e_stop="31985" e_length="51"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27410" stop="27573"/>
              <exon start="27666" stop="27771"/>
              <exon start="29150" stop="29218"/>
              <exon start="29382" stop="29558"/>
              <exon start="29664" stop="29737"/>
              <exon start="30195" stop="30297"/>
              <exon start="30695" stop="30737"/>
              <exon start="31096" stop="31158"/>
              <exon start="31535" stop="31764"/>
              <exon start="31935" stop="31985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7243" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGTTATTTTATTTTTTTCGCATTTTGTATATGAATTTTCGGAACCCCATTTGTAAAAAAATGGAGTAGTATGTATCTTAGGGTTGTGAGAAAATGGGGGAAATTAAAGTTCCATCATTAGTTGACTTGTGCATTTACTCAATTAGAGATGAACTCATTCAAG : TTGATGATCTTAATCTTTCATCAGTATTGTATCGCCTTCCTACGGAGTTGTTCGATCAGTTGCTGTTGCAGTTACCTCCGTTGGCATTGCAGAAATTACAACAAGG : GAAATCTGTTATCTTGGATGATCATGAGCTTTTGACTGACGGTGTTGATAATCAGAGAAAGCGTAAAAG : ATATCTGAATTTTGAGGAAGAGTGGAAAAATCTGTATGAAGCTCGGTGGCCTGCTTTTGGTTGGAGGAGTAAGAATTTCAGGAGTCAGTCATCTGCCAGATCAGCAAACCAAAAAGAAGTAGAGTGTGAATCCGCAAATGACTGGCAACAGATGTATTGGGAAGCACATTTGCAGAA : TTGCCTGGATACAGCAGCAGAGTTGACTTTATTCCCATCTTTTCATGGTCGGATTAGTGAAATAGAAGTTCCAG : AATCAATCTTAAACTATATTGATCATAGGGGAGGCATCAGTAGATTCACCTGTGACTATTCCAAGTTCGCTTATCATTGCCAACAATTTGGATCGTATGCCAG : GCACCTGAGATTGCCAAATGTTCTGTGTGTGGAAGAAACTTGT : CTTTTACTTAGAAATGCAAGGTTGGAGAGTTTGGAACTACAATGGATTAAGTCTTATATGCAT : GTCGAGGGGTTATGCAAACTCATCAGCCAGAACTATCGATCCCTTAAGTCAATTAAATTCATGCATTGCAAGTTTACAGTTTCTTCTCTTGATGCAATTTGTGACTTGCTATGCATGCACAATCCTCAAGCACTTGGGATGCAACATTTCTCAATCAAGACATCAAACTTCCTAGAGAACAACTTTCAATCCTCGCCAGCTGGACTGATATCTTTGCTATCATCAGGGAG : GTCCTTGTCTTCACTATGCTTATCAGACAACCATCTTCCTCGCCATTTTGC</gDNA_template>
            <first_frame> L  V  I  L  F  F  S  H  F  V  Y  E  F  S  E  P  H  L  *  K  N  G  V  V  C  I  L  G  L  *  E  N  G  G  N  *  S  S  I  I  S  *  L  V  H  L  L  N  *  R  *  T  H  S  S :   *  *  S  *  S  F  I  S  I  V  S  P  S  Y  G  V  V  R  S  V  A  V  A  V  T  S  V  G  I  A  E  I  T  T  R  :  E  I  C  Y  L  G  *  S  *  A  F  D  *  R  C  *  *  S  E  K  A  *  K  :  I  S  E  F  *  G  R  V  E  K  S  V  *  S  S  V  A  C  F  W  L  E  E  *  E  F  Q  E  S  V  I  C  Q  I  S  K  P  K  R  S  R  V  *  I  R  K  *  L  A  T  D  V  L  G  S  T  F  A  E  :  L  P  G  Y  S  S  R  V  D  F  I  P  I  F  S  W  S  D  *  *  N  R  S  S  R :   I  N  L  K  L  Y  *  S  *  G  R  H  Q  *  I  H  L  *  L  F  Q  V  R  L  S  L  P  T  I  W  I  V  C  Q  :  A  P  E  I  A  K  C  S  V  C  G  R  N  L   : S  F  T  *  K  C  K  V  G  E  F  G  T  T  M  D  *  V  L  Y  A   : C  R  G  V  M  Q  T  H  Q  P  E  L  S  I  P  *  V  N  *  I  H  A  L  Q  V  Y  S  F  F  S  *  C  N  L  *  L  A  M  H  A  Q  S  S  S  T  W  D  A  T  F  L  N  Q  D  I  K  L  P  R  E  Q  L  S  I  L  A  S  W  T  D  I  F  A  I  I  R  E  :  V  L  V  F  T  M  L  I  R  Q  P  S  S  S  P  F  C </first_frame>
            <second_frame>  *  L  F  Y  F  F  R  I  L  Y  M  N  F  R  N  P  I  C  K  K  M  E  *  Y  V  S  *  G  C  E  K  M  G  E  I  K  V  P  S  L  V  D  L  C  I  Y  S  I  R  D  E  L  I  Q   : V  D  D  L  N  L  S  S  V  L  Y  R  L  P  T  E  L  F  D  Q  L  L  L  Q  L  P  P  L  A  L  Q  K  L  Q  Q  G :   K  S  V  I  L  D  D  H  E  L  L  T  D  G  V  D  N  Q  R  K  R  K  R :   Y  L  N  F  E  E  E  W  K  N  L  Y  E  A  R  W  P  A  F  G  W  R  S  K  N  F  R  S  Q  S  S  A  R  S  A  N  Q  K  E  V  E  C  E  S  A  N  D  W  Q  Q  M  Y  W  E  A  H  L  Q  N :   C  L  D  T  A  A  E  L  T  L  F  P  S  F  H  G  R  I  S  E  I  E  V  P   : E  S  I  L  N  Y  I  D  H  R  G  G  I  S  R  F  T  C  D  Y  S  K  F  A  Y  H  C  Q  Q  F  G  S  Y  A  R :   H  L  R  L  P  N  V  L  C  V  E  E  T  C  :  L  L  L  R  N  A  R  L  E  S  L  E  L  Q  W  I  K  S  Y  M  H  :  V  E  G  L  C  K  L  I  S  Q  N  Y  R  S  L  K  S  I  K  F  M  H  C  K  F  T  V  S  S  L  D  A  I  C  D  L  L  C  M  H  N  P  Q  A  L  G  M  Q  H  F  S  I  K  T  S  N  F  L  E  N  N  F  Q  S  S  P  A  G  L  I  S  L  L  S  S  G  R :   S  L  S  S  L  C  L  S  D  N  H  L  P  R  H  F   </second_frame>
            <third_frame>   S  Y  F  I  F  F  A  F  C  I  *  I  F  G  T  P  F  V  K  K  W  S  S  M  Y  L  R  V  V  R  K  W  G  K  L  K  F  H  H  *  L  T  C  A  F  T  Q  L  E  M  N  S  F  K  :  L  M  I  L  I  F  H  Q  Y  C  I  A  F  L  R  S  C  S  I  S  C  C  C  S  Y  L  R  W  H  C  R  N  Y  N  K   : G  N  L  L  S  W  M  I  M  S  F  *  L  T  V  L  I  I  R  E  S  V  K   : D  I  *  I  L  R  K  S  G  K  I  C  M  K  L  G  G  L  L  L  V  G  G  V  R  I  S  G  V  S  H  L  P  D  Q  Q  T  K  K  K  *  S  V  N  P  Q  M  T  G  N  R  C  I  G  K  H  I  C  R   : I  A  W  I  Q  Q  Q  S  *  L  Y  S  H  L  F  M  V  G  L  V  K  *  K  F  Q  :  N  Q  S  *  T  I  L  I  I  G  E  A  S  V  D  S  P  V  T  I  P  S  S  L  I  I  A  N  N  L  D  R  M  P   : G  T  *  D  C  Q  M  F  C  V  W  K  K  L  V :   F  Y  L  E  M  Q  G  W  R  V  W  N  Y  N  G  L  S  L  I  C  M :   S  R  G  Y  A  N  S  S  A  R  T  I  D  P  L  S  Q  L  N  S  C  I  A  S  L  Q  F  L  L  L  M  Q  F  V  T  C  Y  A  C  T  I  L  K  H  L  G  C  N  I  S  Q  S  R  H  Q  T  S  *  R  T  T  F  N  P  R  Q  L  D  *  Y  L  C  Y  H  Q  G   : G  P  C  L  H  Y  A  Y  Q  T  T  I  F  L  A  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0315H13.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27492" stop="27573"/>
                    <exon start="27666" stop="27771"/>
                    <exon start="29150" stop="29218"/>
                    <exon start="29382" stop="29558"/>
                    <exon start="29664" stop="29737"/>
                    <exon start="30195" stop="30297"/>
                    <exon start="30695" stop="30737"/>
                    <exon start="31096" stop="31158"/>
                    <exon start="31535" stop="31764"/>
                    <exon start="31935" stop="31983"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>996</number_coding_nucleotides>
                  <number_encoded_amino_acids>332</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCEKMGEIKVPSLVDLCIYSIRDELIQVDDLNLSSVLYRLPTELFDQLLLQLPPLALQKLQQGKSVILDDHELLTDGVDNQRKRKRYLNFEEEWKNLYEARWPAFGWRSKNFRSQSSARSANQKEVECESANDWQQMYWEAHLQNCLDTAAELTLFPSFHGRISEIEVPESILNYIDHRGGISRFTCDYSKFAYHCQQFGSYARHLRLPNVLCVEETCLLLRNARLESLELQWIKSYMHVEGLCKLISQNYRSLKSIKFMHCKFTVSSLDAICDLLCMHNPQALGMQHFSIKTSNFLENNFQSSPAGLISLLSSGRSLSSLCLSDNHLPRHF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30483" e_stop="30992"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30483" e_stop="30992" e_length="510"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30483" stop="30992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M586-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGTACTTTCTTTTCCTTTTTTTCCTCCTTGAAACAGGGTGTGTGCAGAGTAAGTGGTTGTTTTGAACATTAAAAGCACAAATTTGAGCCTTCAAGTGCATTTAGACCCTTCATTGCAAATGATATGTGCAGCTACATATTGTGTTTCAACTACCTTTCTTGATGTTCTCAAACATAACTCATTTTTTAATTACATTTGTTTGATTGCAGGCACCTGAGATTGCCAAATGTTCTGTGTGTGGAAGAAACTTGTGTAAGTTGTAGTGTTGCACGTACTGTGCTCTATATGTTCTCTATTTCCAATTGAAAGTCCAATTTGACTTTCTAAGATCAAGCAGGGCATTTTAATTTTTAAATTGAAATCATATATAAATGTTTAACTACTTGACGCAGATTAAAAAAAGCTTCTAATTGATGATACTTGTGTGAAATTTCAATTTCTAATTTTGTCGTCAAATAGAAAAAGAACGTTAAAAGCAAGTTAGGAAATGCTGGTTTAATGTATATT</gDNA_template>
            <first_frame> F  C  T  F  F  S  F  F  S  S  L  K  Q  G  V  C  R  V  S  G  C  F  E  H  *  K  H  K  F  E  P  S  S  A  F  R  P  F  I  A  N  D  M  C  S  Y  I  L  C  F  N  Y  L  S  *  C  S  Q  T  *  L  I  F  *  L  H  L  F  D  C  R  H  L  R  L  P  N  V  L  C  V  E  E  T  C  V  S  C  S  V  A  R  T  V  L  Y  M  F  S  I  S  N  *  K  S  N  L  T  F  *  D  Q  A  G  H  F  N  F  *  I  E  I  I  Y  K  C  L  T  T  *  R  R  L  K  K  A  S  N  *  *  Y  L  C  E  I  S  I  S  N  F  V  V  K  *  K  K  N  V  K  S  K  L  G  N  A  G  L  M  Y  I </first_frame>
            <second_frame>  F  V  L  S  F  P  F  F  P  P  *  N  R  V  C  A  E  *  V  V  V  L  N  I  K  S  T  N  L  S  L  Q  V  H  L  D  P  S  L  Q  M  I  C  A  A  T  Y  C  V  S  T  T  F  L  D  V  L  K  H  N  S  F  F  N  Y  I  C  L  I  A  G  T  *  D  C  Q  M  F  C  V  W  K  K  L  V  *  V  V  V  L  H  V  L  C  S  I  C  S  L  F  P  I  E  S  P  I  *  L  S  K  I  K  Q  G  I  L  I  F  K  L  K  S  Y  I  N  V  *  L  L  D  A  D  *  K  K  L  L  I  D  D  T  C  V  K  F  Q  F  L  I  L  S  S  N  R  K  R  T  L  K  A  S  *  E  M  L  V  *  C  I   </second_frame>
            <third_frame>   L  Y  F  L  F  L  F  F  L  L  E  T  G  C  V  Q  S  K  W  L  F  *  T  L  K  A  Q  I  *  A  F  K  C  I  *  T  L  H  C  K  *  Y  V  Q  L  H  I  V  F  Q  L  P  F  L  M  F  S  N  I  T  H  F  L  I  T  F  V  *  L  Q  A  P  E  I  A  K  C  S  V  C  G  R  N  L  C  K  L  *  C  C  T  Y  C  A  L  Y  V  L  Y  F  Q  L  K  V  Q  F  D  F  L  R  S  S  R  A  F  *  F  L  N  *  N  H  I  *  M  F  N  Y  L  T  Q  I  K  K  S  F  *  L  M  I  L  V  *  N  F  N  F  *  F  C  R  Q  I  E  K  E  R  *  K  Q  V  R  K  C  W  F  N  V  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0315H13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="31778" PGL_stop="31265"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31778" e_stop="31265"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31778" e_stop="31265" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31778" stop="31265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M586-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAATCCGCTATACCTCCCTGATGATAGCAAAGATATCAGTCCAGCTGGCGAGGATTGAAAGTTGTTCTCTAGGAAGTTTGATGTCTTGATTGAGAAATGTTGCATCCCAAGTGCTTGAGGATTGTGCATGCATAGCAAGTCACAAATTGCATCAAGAGAAGAAACTGTAAACTTGCAATGCATGAATTTAATTGACTTAAGGGATCGATAGTTCTGGCTGATGAGTTTGCATAACCCCTCGACCTGTAAGGTTGAAAGCCACAAGAAAAGCAGTGTAAATAGTTAATTCTTCAGCATAACAAGTTCTAATCCAGAAGATATAACTGTTCAAAACAAAGAAACGTTTGCAAATTTCATTATTACTACAGATGCCAAACAGAAAATGCACAAGCACTTGAGACAACAATTATGTTTCACACATTTAGTTCTGACTTGAATTCCAGAAATAAATGTATGTCAAAGTATATATTAGGATCTGATGCCAATGGCATGTCTTGAATCTTATGTCAAACA</gDNA_template>
            <first_frame> E  I  R  Y  T  S  L  M  I  A  K  I  S  V  Q  L  A  R  I  E  S  C  S  L  G  S  L  M  S  *  L  R  N  V  A  S  Q  V  L  E  D  C  A  C  I  A  S  H  K  L  H  Q  E  K  K  L  *  T  C  N  A  *  I  *  L  T  *  G  I  D  S  S  G  *  *  V  C  I  T  P  R  P  V  R  L  K  A  T  R  K  A  V  *  I  V  N  S  S  A  *  Q  V  L  I  Q  K  I  *  L  F  K  T  K  K  R  L  Q  I  S  L  L  L  Q  M  P  N  R  K  C  T  S  T  *  D  N  N  Y  V  S  H  I  *  F  *  L  E  F  Q  K  *  M  Y  V  K  V  Y  I  R  I  *  C  Q  W  H  V  L  N  L  M  S  N  </first_frame>
            <second_frame>  K  S  A  I  P  P  *  *  *  Q  R  Y  Q  S  S  W  R  G  L  K  V  V  L  *  E  V  *  C  L  D  *  E  M  L  H  P  K  C  L  R  I  V  H  A  *  Q  V  T  N  C  I  K  R  R  N  C  K  L  A  M  H  E  F  N  *  L  K  G  S  I  V  L  A  D  E  F  A  *  P  L  D  L  *  G  *  K  P  Q  E  K  Q  C  K  *  L  I  L  Q  H  N  K  F  *  S  R  R  Y  N  C  S  K  Q  R  N  V  C  K  F  H  Y  Y  Y  R  C  Q  T  E  N  A  Q  A  L  E  T  T  I  M  F  H  T  F  S  S  D  L  N  S  R  N  K  C  M  S  K  Y  I  L  G  S  D  A  N  G  M  S  *  I  L  C  Q  T </second_frame>
            <third_frame>   N  P  L  Y  L  P  D  D  S  K  D  I  S  P  A  G  E  D  *  K  L  F  S  R  K  F  D  V  L  I  E  K  C  C  I  P  S  A  *  G  L  C  M  H  S  K  S  Q  I  A  S  R  E  E  T  V  N  L  Q  C  M  N  L  I  D  L  R  D  R  *  F  W  L  M  S  L  H  N  P  S  T  C  K  V  E  S  H  K  K  S  S  V  N  S  *  F  F  S  I  T  S  S  N  P  E  D  I  T  V  Q  N  K  E  T  F  A  N  F  I  I  T  T  D  A  K  Q  K  M  H  K  H  L  R  Q  Q  L  C  F  T  H  L  V  L  T  *  I  P  E  I  N  V  C  Q  S  I  Y  *  D  L  M  P  M  A  C  L  E  S  Y  V  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0315H13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="65012" PGL_stop="65482"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65012" e_stop="65482"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65012" e_stop="65482" e_length="471"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65012" stop="65482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M130-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTGCAAGAAAACTAAACAATCAACTAAAAGGAAATGAAATTAAGAAAATCAGTGAATGCAAAATGGTATGAAGTAATTGCATTAGACGTTGAGGCTCAACATCCTCTGCGCGTGATTTAAAAATATCATTGTAACATCTGTATACCTAGAAGGTTCCTTGCATAATAGTTCTTTGTGTTGAAGCATGAAGTATAATTTCATTAGACGTTGAGGCTCAACATCCTATGCGCATGAGTTAAGGATATCAATGTTGATAACCTAGAAAGTTCTTTACTGGAAAAGATAGAAAATACTTATGCATTAGAGGGCGAGATCATATGGAAAGTAATAAAAAGAAAATGGACTAAAATTGCTTATTTTCTGTTATATATAATACTTTTGAAAGTGTTTTCTTAATTTCTTTCTAAAATTAAGTGGCAATTTTCATTAAAAATATATTTTTTTGTAAAATTGATTTTTCAAAACTATAG</gDNA_template>
            <first_frame> S  A  R  K  L  N  N  Q  L  K  G  N  E  I  K  K  I  S  E  C  K  M  V  *  S  N  C  I  R  R  *  G  S  T  S  S  A  R  D  L  K  I  S  L  *  H  L  Y  T  *  K  V  P  C  I  I  V  L  C  V  E  A  *  S  I  I  S  L  D  V  E  A  Q  H  P  M  R  M  S  *  G  Y  Q  C  *  *  P  R  K  F  F  T  G  K  D  R  K  Y  L  C  I  R  G  R  D  H  M  E  S  N  K  K  K  M  D  *  N  C  L  F  S  V  I  Y  N  T  F  E  S  V  F  L  I  S  F  *  N  *  V  A  I  F  I  K  N  I  F  F  C  K  I  D  F  S  K  L  * </first_frame>
            <second_frame>  V  Q  E  N  *  T  I  N  *  K  E  M  K  L  R  K  S  V  N  A  K  W  Y  E  V  I  A  L  D  V  E  A  Q  H  P  L  R  V  I  *  K  Y  H  C  N  I  C  I  P  R  R  F  L  A  *  *  F  F  V  L  K  H  E  V  *  F  H  *  T  L  R  L  N  I  L  C  A  *  V  K  D  I  N  V  D  N  L  E  S  S  L  L  E  K  I  E  N  T  Y  A  L  E  G  E  I  I  W  K  V  I  K  R  K  W  T  K  I  A  Y  F  L  L  Y  I  I  L  L  K  V  F  S  *  F  L  S  K  I  K  W  Q  F  S  L  K  I  Y  F  F  V  K  L  I  F  Q  N  Y   </second_frame>
            <third_frame>   C  K  K  T  K  Q  S  T  K  R  K  *  N  *  E  N  Q  *  M  Q  N  G  M  K  *  L  H  *  T  L  R  L  N  I  L  C  A  *  F  K  N  I  I  V  T  S  V  Y  L  E  G  S  L  H  N  S  S  L  C  *  S  M  K  Y  N  F  I  R  R  *  G  S  T  S  Y  A  H  E  L  R  I  S  M  L  I  T  *  K  V  L  Y  W  K  R  *  K  I  L  M  H  *  R  A  R  S  Y  G  K  *  *  K  E  N  G  L  K  L  L  I  F  C  Y  I  *  Y  F  *  K  C  F  L  N  F  F  L  K  L  S  G  N  F  H  *  K  Y  I  F  L  *  N  *  F  F  K  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0315H13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="66142" PGL_stop="65696"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66142" e_stop="65696"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66142" e_stop="65696" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66142" stop="65696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M130-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGCAGATCATACGCATACCAATTTCACATTTAATCACGCCAATTTTATGAGGTGGATCAACATGCAGCTGAAACTAAAATAATATAAGAACCTAAACGAGAAAAAACTGGCAGATCGATTGGCCTTGAAAGAAAATTAAGTTCGGACTTAGTATAAATATATAGTTTGGAGAAGTTCCAAATTATATTTCTTGTGTTCAATCATACGCATACCATTTCGCAATCAATCACACCAATAAACTAAAATTGTTAATCTATGAGATTCAAAACAACTGGTAAATCGATCAGCCCGAAATGAAAAAATTAAGTTGCAAAGTATGTCAGTACCAAATCGATCTTCATCATTGAGGCGCTGATGTTGAGTGATTTTTCCAGCTGAAGAATTTAGGGTTTTTGGTGGATGATTAACAGCGGATTTGAATTTTCGCCTCATTATGTTGTGATGAT</gDNA_template>
            <first_frame> *  Q  I  I  R  I  P  I  S  H  L  I  T  P  I  L  *  G  G  S  T  C  S  *  N  *  N  N  I  R  T  *  T  R  K  N  W  Q  I  D  W  P  *  K  K  I  K  F  G  L  S  I  N  I  *  F  G  E  V  P  N  Y  I  S  C  V  Q  S  Y  A  Y  H  F  A  I  N  H  T  N  K  L  K  L  L  I  Y  E  I  Q  N  N  W  *  I  D  Q  P  E  M  K  K  L  S  C  K  V  C  Q  Y  Q  I  D  L  H  H  *  G  A  D  V  E  *  F  F  Q  L  K  N  L  G  F  L  V  D  D  *  Q  R  I  *  I  F  A  S  L  C  C  D  D </first_frame>
            <second_frame>  S  R  S  Y  A  Y  Q  F  H  I  *  S  R  Q  F  Y  E  V  D  Q  H  A  A  E  T  K  I  I  *  E  P  K  R  E  K  T  G  R  S  I  G  L  E  R  K  L  S  S  D  L  V  *  I  Y  S  L  E  K  F  Q  I  I  F  L  V  F  N  H  T  H  T  I  S  Q  S  I  T  P  I  N  *  N  C  *  S  M  R  F  K  T  T  G  K  S  I  S  P  K  *  K  N  *  V  A  K  Y  V  S  T  K  S  I  F  I  I  E  A  L  M  L  S  D  F  S  S  *  R  I  *  G  F  W  W  M  I  N  S  G  F  E  F  S  P  H  Y  V  V  M   </second_frame>
            <third_frame>   A  D  H  T  H  T  N  F  T  F  N  H  A  N  F  M  R  W  I  N  M  Q  L  K  L  K  *  Y  K  N  L  N  E  K  K  L  A  D  R  L  A  L  K  E  N  *  V  R  T  *  Y  K  Y  I  V  W  R  S  S  K  L  Y  F  L  C  S  I  I  R  I  P  F  R  N  Q  S  H  Q  *  T  K  I  V  N  L  *  D  S  K  Q  L  V  N  R  S  A  R  N  E  K  I  K  L  Q  S  M  S  V  P  N  R  S  S  S  L  R  R  *  C  *  V  I  F  P  A  E  E  F  R  V  F  G  G  *  L  T  A  D  L  N  F  R  L  I  M  L  *  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0315H13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 14 chains have been computed
$ 
$ memory statistics:
$ 14248 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 2035 bytes was the average size of a spliced alignment
$ 11816 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1969 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 15 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 23:44:07
-->
