<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 17:26:46"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226113" ref_strand="+" ref_description="SGN-E226113 [cLEL-31-E5](-)">
      <seq>tctaaatcaagatcccagagtaacattttgtggttacagcattccacatccctctgatgctcgagtgaatataagagttcagactactggggatccagcaagggaggtattcaatgattcatgtcaggatcttatgcttatctgcgaacatgttagaggcacatttgatcaggctgttttaaagtttaaaaccggaaaaggtctgagtgctatggatatcaagaaatgatttgactaatagtttaaatagccttctatccatgtgaattttttcctgttttgcaaacacgaggaaaccatcaaaagcaattgtttatttggtgcactaaattgcttttttttttttgcaaaatcatgctaaagaatgcacctttggctgtatggaaatattaatctgctcattggttgttttatgtagtaattttatgttctagtttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8487" stop="6760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8486" g_stop="8475" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8474" i_stop="8186" i_length="289">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8185" g_stop="8109" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="89" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8108" i_stop="7408" i_length="701">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7407" g_stop="7061" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="437" r_length="348" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="438" polyA_stop="457"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E226113" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8486" e_stop="8475"/>
          <exon e_start="8185" e_stop="8109"/>
          <exon e_start="7407" e_stop="7061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAATCAAGAGTTAGTAATTCATCTCTTCCTCTTTCCTTTCTTCTTCCATCATTATGCAGTAGTCACTGCAAGTGTACTAATATAAACTATTTTCTAGAATTTTTCTTGAATATATTACTCAACTCGTAATATAGATAGCCTCCTTATCTCGTTTTATTACATTCCACTGATCTTACGTTAATGTTGCTGCATGGTCTGTCTGCCACTCCCCATCCCCCCTCCCCGCTCTCTCTTTTCTTGAGAGTAGTTTAAGAAACGAACTTAGGACAATGATTAACTTATGTCTACTTTCTTGCAGTCCCAGAGTAACATTTTGTGGTTACAGCATTCCACATCCCTCTGATGCTCGAGTGAATATAAGAGTTCAGACTACTGGTAAGGCTTAAATATCTAGATATTTCTAGAACTTGTCAAAGAAAAAAAAGCTTATATTTTCTGATTTATCTATCACGGGAATATGCATCCTGCTTCCACATTAACATAACATGCTTGATACTGGCTAAAACTTTCATCATGAACTTTTTATATAGCTGTTGGACTTTCTGGCCAGTTGGTTTTGGTGGAGAAAATATTGTGAGAAAATTCACCTTTTTCTTTCAGTTTATTTGATCTGGTTCATGCAGTAGATTGTGTTATTAGATATTTCTACAACATGCCTATGTACATTATAATATGATAATTTTTTTTCTTGATAACCGTGGTGCCCGGGCTAGCTTACGCGCACCTCGACTAATTCCAAGGAATACCTGTTAGTTGTCACCTCCCACCACCAACAAGTAATGATACCACTGTCCACCTAGGTTAGGACAAATGGGAAAAAATCACCTAGTATTTTTTGTTTCTGCTGGGATTTGAACCCTCGTGGTTCTCAACATACTTCATTGACCACTAAGCCACACCCTTGGGTATTGTACATTGTATGATAGGACCACTTGTAAATCGTTTAGAACAATTTGCAATGGTCTTTTTATACTTCAATATGTTTTTACCCTTCTATTCTGAGAAATGTTGTGGATCTCTGTTTGAGTTTTGGTACATCAAGATTTTCTGCAACTTATAGTGGTCTTCTATTGCAGGGGATCCAGCAAGGGAGGTATTCAATGATTCATGTCAGGATCTTATGCTTATCTGCGAACATGTTAGAGGCACATTTGATCAGGCTGTTTTAAAGTTTAAAACCGGAAAAGGTCTGAGTGCTATGGATATCAAGAAATGATTTGACTAATAGTTTAAATAGCCTTCTATCCATGTGAATTTTTTCCTGTTTTGCAAACACGAGGAAACCATCAAAAGCAATTGTTTATTTGGTGCACTAAATTGC-TTTTTTTTTTTGCAAAATCATGCTAAAGAATGCACCTTTGGCTGTATGGAAATATTAATCTGCTCATTGGTTGTTTTATGTAGTAATTTTATGTTCTAGTTT</genome_strand>
        <mrna_strand>TCTAAATCAAGA.................................................................................................................................................................................................................................................................................................TCCCAGAGTAACATTTTGTGGTTACAGCATTCCACATCCCTCTGATGCTCGAGTGAATATAAGAGTTCAGACTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCCAGCAAGGGAGGTATTCAATGATTCATGTCAGGATCTTATGCTTATCTGCGAACATGTTAGAGGCACATTTGATCAGGCTGTTTTAAAGTTTAAAACCGGAAAAGGTCTGAGTGCTATGGATATCAAGAAATGATTTGACTAATAGTTTAAATAGCCTTCTATCCATGTGAATTTTTTCCTGTTTTGCAAACACGAGGAAACCATCAAAAGCAATTGTTTATTTGGTGCACTAAATTGCTTTTTTTTTTTTGCAAAATCATGCTAAAGAATGCACCTTTGGCTGTATGGAAATATTAATCTGCTCATTGGTTGTTTTATGTAGTAATTTTATGTTCTAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226005" ref_strand="+" ref_description="SGN-E226005 [cLEL-31-C5](-)">
      <seq>atgctcgagtgaatataagagttcagactactggggatccagcaagggaggtattcaatgattcatgtcaggatcttatgcttatctgcgaacatgttagaggcacatttgatcaggctgttttaaagtttaaaaccggaaaaggtctgagtgctatggatatcaagaaatgatttgactaatagtttaaatagccttctatccatgtgaattttttcctgttttgcaaacacgaggaaaccatcaaaagcaattgtttatttggtgcactaaattgcttttttttttttgcaaaatcatgctaaagaatgcacctttggctgtatggaaatattaatctgctcattggttgttttatgtagtaattttatgttctagtttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8441" stop="6760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8141" g_stop="8109" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8108" i_stop="7408" i_length="701">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7407" g_stop="7061" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="381" r_length="348" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="382" polyA_stop="401"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E226005" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8141" e_stop="8109"/>
          <exon e_start="7407" e_stop="7061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTCGAGTGAATATAAGAGTTCAGACTACTGGTAAGGCTTAAATATCTAGATATTTCTAGAACTTGTCAAAGAAAAAAAAGCTTATATTTTCTGATTTATCTATCACGGGAATATGCATCCTGCTTCCACATTAACATAACATGCTTGATACTGGCTAAAACTTTCATCATGAACTTTTTATATAGCTGTTGGACTTTCTGGCCAGTTGGTTTTGGTGGAGAAAATATTGTGAGAAAATTCACCTTTTTCTTTCAGTTTATTTGATCTGGTTCATGCAGTAGATTGTGTTATTAGATATTTCTACAACATGCCTATGTACATTATAATATGATAATTTTTTTTCTTGATAACCGTGGTGCCCGGGCTAGCTTACGCGCACCTCGACTAATTCCAAGGAATACCTGTTAGTTGTCACCTCCCACCACCAACAAGTAATGATACCACTGTCCACCTAGGTTAGGACAAATGGGAAAAAATCACCTAGTATTTTTTGTTTCTGCTGGGATTTGAACCCTCGTGGTTCTCAACATACTTCATTGACCACTAAGCCACACCCTTGGGTATTGTACATTGTATGATAGGACCACTTGTAAATCGTTTAGAACAATTTGCAATGGTCTTTTTATACTTCAATATGTTTTTACCCTTCTATTCTGAGAAATGTTGTGGATCTCTGTTTGAGTTTTGGTACATCAAGATTTTCTGCAACTTATAGTGGTCTTCTATTGCAGGGGATCCAGCAAGGGAGGTATTCAATGATTCATGTCAGGATCTTATGCTTATCTGCGAACATGTTAGAGGCACATTTGATCAGGCTGTTTTAAAGTTTAAAACCGGAAAAGGTCTGAGTGCTATGGATATCAAGAAATGATTTGACTAATAGTTTAAATAGCCTTCTATCCATGTGAATTTTTTCCTGTTTTGCAAACACGAGGAAACCATCAAAAGCAATTGTTTATTTGGTGCACTAAATTGC-TTTTTTTTTTTGCAAAATCATGCTAAAGAATGCACCTTTGGCTGTATGGAAATATTAATCTGCTCATTGGTTGTTTTATGTAGTAATTTTATGTTCTAGTTT</genome_strand>
        <mrna_strand>ATGCTCGAGTGAATATAAGAGTTCAGACTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCCAGCAAGGGAGGTATTCAATGATTCATGTCAGGATCTTATGCTTATCTGCGAACATGTTAGAGGCACATTTGATCAGGCTGTTTTAAAGTTTAAAACCGGAAAAGGTCTGAGTGCTATGGATATCAAGAAATGATTTGACTAATAGTTTAAATAGCCTTCTATCCATGTGAATTTTTTCCTGTTTTGCAAACACGAGGAAACCATCAAAAGCAATTGTTTATTTGGTGCACTAAATTGCTTTTTTTTTTTTGCAAAATCATGCTAAAGAATGCACCTTTGGCTGTATGGAAATATTAATCTGCTCATTGGTTGTTTTATGTAGTAATTTTATGTTCTAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226017" ref_strand="+" ref_description="SGN-E226017 [cLEL-31-E5](-)">
      <seq>tgctcgagtgaatataagagttcagactactggggatccagcaagggaggtattcaatgattcatgtcaggatcttatgcttatctgcgaacatgttagaggcacatttgatcaggctgttttaaagtttaaaaccggaaaaggtctgagtgctatggatatcaagaaatgatttgactaatagtttaaatagccttctatccatgtgaattttttcctgttttgcaaacacgaggaaaccatcaaaagcaattgtttatttggtgcactaaattgcttttttttttttgcaaaatcatgctaaagaatgcacctttggctgtatggaaatattaatctgctcattggttgttttatgtagtaattttatgttctagtttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8440" stop="6760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8140" g_stop="8109" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8108" i_stop="7408" i_length="701">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7407" g_stop="7061" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="380" r_length="348" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="381" polyA_stop="400"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E226017" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8140" e_stop="8109"/>
          <exon e_start="7407" e_stop="7061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCGAGTGAATATAAGAGTTCAGACTACTGGTAAGGCTTAAATATCTAGATATTTCTAGAACTTGTCAAAGAAAAAAAAGCTTATATTTTCTGATTTATCTATCACGGGAATATGCATCCTGCTTCCACATTAACATAACATGCTTGATACTGGCTAAAACTTTCATCATGAACTTTTTATATAGCTGTTGGACTTTCTGGCCAGTTGGTTTTGGTGGAGAAAATATTGTGAGAAAATTCACCTTTTTCTTTCAGTTTATTTGATCTGGTTCATGCAGTAGATTGTGTTATTAGATATTTCTACAACATGCCTATGTACATTATAATATGATAATTTTTTTTCTTGATAACCGTGGTGCCCGGGCTAGCTTACGCGCACCTCGACTAATTCCAAGGAATACCTGTTAGTTGTCACCTCCCACCACCAACAAGTAATGATACCACTGTCCACCTAGGTTAGGACAAATGGGAAAAAATCACCTAGTATTTTTTGTTTCTGCTGGGATTTGAACCCTCGTGGTTCTCAACATACTTCATTGACCACTAAGCCACACCCTTGGGTATTGTACATTGTATGATAGGACCACTTGTAAATCGTTTAGAACAATTTGCAATGGTCTTTTTATACTTCAATATGTTTTTACCCTTCTATTCTGAGAAATGTTGTGGATCTCTGTTTGAGTTTTGGTACATCAAGATTTTCTGCAACTTATAGTGGTCTTCTATTGCAGGGGATCCAGCAAGGGAGGTATTCAATGATTCATGTCAGGATCTTATGCTTATCTGCGAACATGTTAGAGGCACATTTGATCAGGCTGTTTTAAAGTTTAAAACCGGAAAAGGTCTGAGTGCTATGGATATCAAGAAATGATTTGACTAATAGTTTAAATAGCCTTCTATCCATGTGAATTTTTTCCTGTTTTGCAAACACGAGGAAACCATCAAAAGCAATTGTTTATTTGGTGCACTAAATTGC-TTTTTTTTTTTGCAAAATCATGCTAAAGAATGCACCTTTGGCTGTATGGAAATATTAATCTGCTCATTGGTTGTTTTATGTAGTAATTTTATGTTCTAGTTT</genome_strand>
        <mrna_strand>TGCTCGAGTGAATATAAGAGTTCAGACTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCCAGCAAGGGAGGTATTCAATGATTCATGTCAGGATCTTATGCTTATCTGCGAACATGTTAGAGGCACATTTGATCAGGCTGTTTTAAAGTTTAAAACCGGAAAAGGTCTGAGTGCTATGGATATCAAGAAATGATTTGACTAATAGTTTAAATAGCCTTCTATCCATGTGAATTTTTTCCTGTTTTGCAAACACGAGGAAACCATCAAAAGCAATTGTTTATTTGGTGCACTAAATTGCTTTTTTTTTTTTGCAAAATCATGCTAAAGAATGCACCTTTGGCTGTATGGAAATATTAATCTGCTCATTGGTTGTTTTATGTAGTAATTTTATGTTCTAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226101" ref_strand="+" ref_description="SGN-E226101 [cLEL-31-C5](-)">
      <seq>actactggggatccagcaagggaggtattcaatgattcatgtcaggatcttatgcttatctgcgaacatgttaaaggcacatttgatcaggctgttttaaagtttaaaaccggaaaaggtctgagtgctatggatatcaagaaatgatttgactaatagtttaaatagccttctatccatgtgaattttttcctgttttgcaaacacgaggaaaccatcaaaagcaattgtttatttggtgcactaaattgcttttttttttttgcaaaatcatgctaaagaatgcacctttggctgtatggaaatattaatctgctcattggttgttttatgtagtaattttatgttctagtttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7714" stop="6760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7414" g_stop="7061" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="356" polyA_stop="375"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E226101" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7414" e_stop="7061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCAGGGGATCCAGCAAGGGAGGTATTCAATGATTCATGTCAGGATCTTATGCTTATCTGCGAACATGTTAGAGGCACATTTGATCAGGCTGTTTTAAAGTTTAAAACCGGAAAAGGTCTGAGTGCTATGGATATCAAGAAATGATTTGACTAATAGTTTAAATAGCCTTCTATCCATGTGAATTTTTTCCTGTTTTGCAAACACGAGGAAACCATCAAAAGCAATTGTTTATTTGGTGCACTAAATTGC-TTTTTTTTTTTGCAAAATCATGCTAAAGAATGCACCTTTGGCTGTATGGAAATATTAATCTGCTCATTGGTTGTTTTATGTAGTAATTTTATGTTCTAGTTT</genome_strand>
        <mrna_strand>ACTACTGGGGATCCAGCAAGGGAGGTATTCAATGATTCATGTCAGGATCTTATGCTTATCTGCGAACATGTTAAAGGCACATTTGATCAGGCTGTTTTAAAGTTTAAAACCGGAAAAGGTCTGAGTGCTATGGATATCAAGAAATGATTTGACTAATAGTTTAAATAGCCTTCTATCCATGTGAATTTTTTCCTGTTTTGCAAACACGAGGAAACCATCAAAAGCAATTGTTTATTTGGTGCACTAAATTGCTTTTTTTTTTTTGCAAAATCATGCTAAAGAATGCACCTTTGGCTGTATGGAAATATTAATCTGCTCATTGGTTGTTTTATGTAGTAATTTTATGTTCTAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343412" ref_strand="+" ref_description="SGN-E343412 [cTOF-19-O2]">
      <seq>ttttctcctcttggacctttgccatcacttctccgttagattttcttttttaacaaaatttgaagcttttacttgcggtggagcatcaaagtttacatctttggtcttgatttaagtcaatggagcacggttcatttgaagatcagtcaaaagcaacattctcgctgacagatgaggatcatacactggcaaatgctgttagattcactctaaatcaagatcccagagtaacattttgtggttacagcattccacatccctctgatgctcgagtgaatataagagttcagactactggggatccagcaagggaggtattcaatgattcatgtcaggatcttatgcttatctgcgaacatgttagaggcacatttgatcagggctgtttaaagtttaaaaccggaaaaggtctgagtgctatggatatcaagaaatgatttgactaatagtttaaatagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11627" stop="6944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11327" g_stop="11211" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11210" i_stop="8579" i_length="2632">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8578" g_stop="8475" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="220" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8474" i_stop="8186" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8185" g_stop="8109" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="297" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8108" i_stop="7408" i_length="701">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7407" g_stop="7244" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="461" r_length="164" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E343412" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11327" e_stop="11211"/>
          <exon e_start="8578" e_stop="8475"/>
          <exon e_start="8185" e_stop="8109"/>
          <exon e_start="7407" e_stop="7244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCCTCTTGGACCTTTGCCATCACTTCTCCGTTAGATTTTCTTTTTTCAACAAAATTTGAAGCTTTTACTTGCGGTGGAGCATCAAAGTTTACATCTTTGGTCTTGATTTAAGGTACCATTTGTTCTATGTGTTTATTTTCATCTCAAAGAATTCCTTTTTTTGCTCAAAATAATCAAGTTTCTTGATTATATTTCACAATCTTAGTTAATTGTGTTGAATTATGTATTACTACTCCTTTTGTCCAAATTTAGGTGTGGCTATTGGGGCATAGATTCTTTAAGTTGTTTTAGAGTAAAAGTTACATTTTTTTTGTAGACTATATAATTGTTAATTCAAAAAATTTTAAAAAGAGTTTGATAGAGTTGTAGTTGGTTTCATTGATTTCTGATTCTGAAAACATAATGGTGAGTAGATTGACACAGATTTCATATCAGCACATTTATGTAGACATATCTTGAACTTTCAGGTTTCTTTGGCCTGTAATGTCATTGTTGAACAAATCAAACCTTAAATTTCAATTGCTTTTAATCCTCAAAATCGTGTTAATACCCGTCCGCAGCTAACTTGCTCCCCCTCTTTCCACAATTAATACCCGTCCGCAGCTAACTTGCTCCCCCTCTTTCCAACAACAATGTACCTTGTGGAATCCCACAAGTGGGGTTTGGAGAGGGTATGATGTATGCGAACGTTACCTTACCTTTTTGTGGTAGAGAAAGTATTTATCAATAGGTCCTTGACTCAAAAGGGAAGTATCCGACTTAGGATTATCAGAAAAGAGCTAGCAAAGTAGCAAAATAAAAAATAGATGCAACAGGAAATAGTAATACACATCGAAGAACAAGAAGCTATGTGATAATCAAATAATATTAAAAGGACAAGAGAAGAGGGAAGGCTATCTCACTCTCTCTCCCACACAGAATGTGACAATATCCAACTACCTACTAACCTTCTATCTTAATCCTCAAGACCTCAACTTTGATATGATAGATCCTTCTATATATGACACCCCGTTGATATTATATCTCCTGAATTTAACCGGATAATATATTCTCCCTCTGTTTCAAAAAGGATGGCCTAGTTTGACTTGGAACGGAGTTTAAGAAAAGAAAGAAGACTTTTTAATCATGTGGTTCTAAATTAAAGTTATGTCAAATGTACCAAAATGCTCTTTGATCTTGTGGTCTTAAACATGCCATGTGGAATGTTAAGTTAATGTTTTACCAAAAAAGAAAAGGGGTCATTCTTTCTGAAACAAACTAAAAAGGAAATAGGGTCATTCTTTTTTAAATGGAGGGAGTACTTATTTACTTCCCATGTGAAATTTGAAAATAGCTCGAGGTTGCGATTTGTGGGGTAAAAATAATTTGAAGGTATTTTGCCTATCTGAATTTTGATTTAGAAAACATATCCTGTCCTAATCTTGGGTAAAGGAAGAGAGTTGGCGTAGGTAGATATCTAGTAAAAATGGTTTAAATATGATGAATCCTCTGAATATGATTACAAAGACTTGGGTTAAGGAAGAGAGTTTGGGAATGGGGAGTAGGTGATTGATTTGTTCAAATGAAAAAATGTTAAAAAAAACCTGAGTCATGCAGTGACAAGAAGCAATATGCACCCATTGCCACCAAAATAGTGCGTCACTCGCCAAGGAACTCTGAGACATACATTTGCTTCTACTGCTATTATATCTGTGGTTACTTGTTTCCTAAAGTTACCTTTCTTTGGGGACTTCTTCATGTCTTTTTCATCCATTTTGACCTCTGTTGAATATTTTTAGATATGAAGCAAAGCTAGAAAACAGTACCTCTGACTAGTTGACTCAAAAGCGACAACCCCAAAACGCCTCTAAGGTCCATTGAAGCTTTAAGTGCAAAGCGCAAATAAAGCGTGACCTTTATTGAAGAAATGCGCGAATGAAGAAAACATACTAATATGTATGTGTAGTCCTGTCGATTTCATGAATTAGAAAAATCAGATATTGACTAAGAGATGTACTTAAGATCTGAAAGCATGAAAGCATGTTAGGCATAATGCATTAATTCTGGAAAATTAGGTGAGATGATCAGCTTTTGGGCCTGGTATGAGATCTTAGTCATTGTTTGAAAAGGAGTACTCCCTCCATCTCAATTTATGTGAAGGTGTTTGACTAGGCATAAAGTTTCAATTTATGTGAAGGTGTGTGACTAGGCATAAAGTCTCAATTTATTTGAAGGTGTTTAACTAGGCATGAAGTCTAATATTTATAAGCATTAATTGAAAGTATATAAACAAAGAAATCGATTTTTTTCCCGATAAAGTGACATATCAATTGCTTAGTGCCACCTCTTCGGGGTTACGCTAAATGGCAAGGAAAAGTATGCCTTGGAGCCTTCATGACGACACCACACGTTAAGCGAGGGGAAACACTCAACATGTTATGCACCTCTGACAACACTGGTTAAACAATTATAGTTGATTATGCTTTGGTCTTGTAGAACATTGGATCACATAATTAAGGTCCTTAGGATTTTGAATGTTCCTTATGGTAGTACAATATTGTTTGCTCTTTAGATAATAGTTCACTGAAAGCATTAATCAGGAGAAACATGTGTTAGGTGAAAGAAGTTTGCTTTCTTACCATTTGACAACTCTTATCTCACTTCTTATATGGTTCTTTTCTTCTTTTTCAATCCGTAGACTACATTCTATTCGAAATTTAAAAAATTTGCTAATTGTTTCTAATTATCATCATTTCTGGAAATAGTCAATGGAGCACGGTTCATTTGAAGATCAGTCAAAAGCAACATTCTCGCTGACAGATGAGGATCATACACTGGCAAATGCTGTTAGATTCACTCTAAATCAAGAGTTAGTAATTCATCTCTTCCTCTTTCCTTTCTTCTTCCATCATTATGCAGTAGTCACTGCAAGTGTACTAATATAAACTATTTTCTAGAATTTTTCTTGAATATATTACTCAACTCGTAATATAGATAGCCTCCTTATCTCGTTTTATTACATTCCACTGATCTTACGTTAATGTTGCTGCATGGTCTGTCTGCCACTCCCCATCCCCCCTCCCCGCTCTCTCTTTTCTTGAGAGTAGTTTAAGAAACGAACTTAGGACAATGATTAACTTATGTCTACTTTCTTGCAGTCCCAGAGTAACATTTTGTGGTTACAGCATTCCACATCCCTCTGATGCTCGAGTGAATATAAGAGTTCAGACTACTGGTAAGGCTTAAATATCTAGATATTTCTAGAACTTGTCAAAGAAAAAAAAGCTTATATTTTCTGATTTATCTATCACGGGAATATGCATCCTGCTTCCACATTAACATAACATGCTTGATACTGGCTAAAACTTTCATCATGAACTTTTTATATAGCTGTTGGACTTTCTGGCCAGTTGGTTTTGGTGGAGAAAATATTGTGAGAAAATTCACCTTTTTCTTTCAGTTTATTTGATCTGGTTCATGCAGTAGATTGTGTTATTAGATATTTCTACAACATGCCTATGTACATTATAATATGATAATTTTTTTTCTTGATAACCGTGGTGCCCGGGCTAGCTTACGCGCACCTCGACTAATTCCAAGGAATACCTGTTAGTTGTCACCTCCCACCACCAACAAGTAATGATACCACTGTCCACCTAGGTTAGGACAAATGGGAAAAAATCACCTAGTATTTTTTGTTTCTGCTGGGATTTGAACCCTCGTGGTTCTCAACATACTTCATTGACCACTAAGCCACACCCTTGGGTATTGTACATTGTATGATAGGACCACTTGTAAATCGTTTAGAACAATTTGCAATGGTCTTTTTATACTTCAATATGTTTTTACCCTTCTATTCTGAGAAATGTTGTGGATCTCTGTTTGAGTTTTGGTACATCAAGATTTTCTGCAACTTATAGTGGTCTTCTATTGCAGGGGATCCAGCAAGGGAGGTATTCAATGATTCATGTCAGGATCTTATGCTTATCTGCGAACATGTTAGAGGCACATTTGATCAGGCTGTTTTAAAGTTTAAAACCGGAAAAGGTCTGAGTGCTATGGATATCAAGAAATGATTTGACTAATAGTTTAAATAGCCT</genome_strand>
        <mrna_strand>TTTTCTCCTCTTGGACCTTTGCCATCACTTCTCCGTTAGATTTTCTTTTTT-AACAAAATTTGAAGCTTTTACTTGCGGTGGAGCATCAAAGTTTACATCTTTGGTCTTGATTTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATGGAGCACGGTTCATTTGAAGATCAGTCAAAAGCAACATTCTCGCTGACAGATGAGGATCATACACTGGCAAATGCTGTTAGATTCACTCTAAATCAAGA.................................................................................................................................................................................................................................................................................................TCCCAGAGTAACATTTTGTGGTTACAGCATTCCACATCCCTCTGATGCTCGAGTGAATATAAGAGTTCAGACTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCCAGCAAGGGAGGTATTCAATGATTCATGTCAGGATCTTATGCTTATCTGCGAACATGTTAGAGGCACATTTGATCAGGGCTGTTTAAAGTTTAAAACCGGAAAAGGTCTGAGTGCTATGGATATCAAGAAATGATTTGACTAATAGTTTAAATAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228802" ref_strand="+" ref_description="SGN-E228802 [cLEL-29-M11](-)">
      <seq>ggcacgagaagatgttgtcactgattcaaaagaatagagcattctactttatgccttcgcgtaatgaagtctctacgcctgtttttgtcatctcaaaaagtggaagttctttaggtgtcatacatccttgtagaaaaaaaaaactgcaacagtcagcccaatcaagttgtgaactgcttgtagtatatatgtgctagtttgtgaaacttgcaagttgtatggcatgaaacatgcaaatgttaaattaaaactcatatgtgaatcaaaacaagaaaccatttttgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15328" stop="16209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15622" g_stop="15908" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="288" polyA_stop="303"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E228802" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15622" e_stop="15908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTTAAAAGATGTTGTCACTGATTCAAAAGAATAGAGCATTCTACTTTATGCCTTCGCGTAATGAAGTCTCTACGCCTGTTTTTGTCATCTCAAAAAGTGGAAGTTCTTTAGGTGTCATACATCCTTGTAGAAAAAAAAAACTGCAACAGTCAGCCCAATCAAGTTGTGAACTGCTTGTAGTATATATGTGCTAGTTTGTGAAACTTGCAAGTTGTATGGCATGAAACATGCAAATGTTAAATTAAAACTCATATGTGAATCAAAACAAGAAACCATTTTTGAAC</genome_strand>
        <mrna_strand>GGCACGAGAAGATGTTGTCACTGATTCAAAAGAATAGAGCATTCTACTTTATGCCTTCGCGTAATGAAGTCTCTACGCCTGTTTTTGTCATCTCAAAAAGTGGAAGTTCTTTAGGTGTCATACATCCTTGTAGAAAAAAAAAACTGCAACAGTCAGCCCAATCAAGTTGTGAACTGCTTGTAGTATATATGTGCTAGTTTGTGAAACTTGCAAGTTGTATGGCATGAAACATGCAAATGTTAAATTAAAACTCATATGTGAATCAAAACAAGAAACCATTTTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229090" ref_strand="+" ref_description="SGN-E229090 [cLEL-29-M11](-)">
      <seq>ggcacgagaagatgttgtcactgattcaaaagaatagagcattctactttatgccttcgcgtaatgaagtctctacgcctgtttttgtcatctcaaaaagtggaagttctttaggtgtcatacatccttgtagaaaaaaaaaactgcaacagtcagcccaatcaagttgtgaactgcttgtagtatatatgtgctagtttgtgaaacttgcaagttgtatggcatgaaacatgcaaatgttaaattaaaactcatatgtgaatcaaaacaagaaaccatttttgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15328" stop="16209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15622" g_stop="15908" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="288" polyA_stop="303"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E229090" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15622" e_stop="15908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTTAAAAGATGTTGTCACTGATTCAAAAGAATAGAGCATTCTACTTTATGCCTTCGCGTAATGAAGTCTCTACGCCTGTTTTTGTCATCTCAAAAAGTGGAAGTTCTTTAGGTGTCATACATCCTTGTAGAAAAAAAAAACTGCAACAGTCAGCCCAATCAAGTTGTGAACTGCTTGTAGTATATATGTGCTAGTTTGTGAAACTTGCAAGTTGTATGGCATGAAACATGCAAATGTTAAATTAAAACTCATATGTGAATCAAAACAAGAAACCATTTTTGAAC</genome_strand>
        <mrna_strand>GGCACGAGAAGATGTTGTCACTGATTCAAAAGAATAGAGCATTCTACTTTATGCCTTCGCGTAATGAAGTCTCTACGCCTGTTTTTGTCATCTCAAAAAGTGGAAGTTCTTTAGGTGTCATACATCCTTGTAGAAAAAAAAAACTGCAACAGTCAGCCCAATCAAGTTGTGAACTGCTTGTAGTATATATGTGCTAGTTTGTGAAACTTGCAAGTTGTATGGCATGAAACATGCAAATGTTAAATTAAAACTCATATGTGAATCAAAACAAGAAACCATTTTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329292" ref_strand="+" ref_description="SGN-E329292 [cTOD-2-O17]">
      <seq>gaagaagaaaaaaggaaaacggtactccattgtcattgcaagtcacaattacttctctacttttagaaaaagcaaaagagaacaagaaattactccaacatactcaccatttcagccatgcttctcatcatcaactcctttaaaatccttcaattttttcctcagcctctgatctgataatcatcagcttctcttttttccttaatttatgagctaagaagcagttacttcaagccatttcctttgaaagttcaatctttcaaggtcaaaagagtttcttgaaatgcttcaaaaattgcatctttttctcattttgtgctcaaaggcaatttctttttgataaaaaagtgtcaaactttttaatgcagaacctcaagaatgctaccagttgtccttgttttctcaatctgtgagctgaaagacagttttttgggtaatgggtacttaaaagtttcaacttttaacacttctcatcttgaattctgttgattttcgttaaattcttcaatcttccctctcaatctgtgaactgaaagacagttttttggttgaaaaatgcctaatcttggagttaataaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19130" stop="17949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18830" g_stop="18249" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E329292" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18830" e_stop="18249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAAAAAGGAAAACTCTACTCCATTGTCATTGCAAGTCACAATTACTTCTCTACTTTTAGAAAAAGCAAAAGAGAACAAGAAATTACTCCAACATACTCACCATTTCAGCCATGCTTCTCATCATCAACTCCTTTAAAATCCTTCAATTTTTTCCTCAGCCTCTGATCTGATAATCATCAGCTTCTCTTTTTTCCTTAATTTATGAGCTAAGAAGCAGTTACTTCAAGCCATTTCCTTTGAAAGTTCAATCTTTCAAGGTCAAAAGAGTTTCTTGAAATGCTTCAAAAATTGCATCTTTTTCTCATTTTGTGCTCAAAGGCAATTTCTTTTTGATAAAAAAGTGTCAAACTTTTTAATGCAGAACCTCAAGAATGCTACCAGTTGTCCTTGTTTTCTCAATCTGTGAGCTGAAAGACAGTTTTTTGGGTAATGGGTACTTAAAAGTTTCAACTTTTAACACTTCTCATCTTGAATTCTGTTGATTTTCGTTAAATTCTTCAATCTTCCCTCTCAATCTGTGAACTGAAAGACAGTTTTTTGGTTGAAAAATGCCTAATCTTGGAGTTAATAAAGCT</genome_strand>
        <mrna_strand>GAAGAAGAAAAAAGGAAAACGGTACTCCATTGTCATTGCAAGTCACAATTACTTCTCTACTTTTAGAAAAAGCAAAAGAGAACAAGAAATTACTCCAACATACTCACCATTTCAGCCATGCTTCTCATCATCAACTCCTTTAAAATCCTTCAATTTTTTCCTCAGCCTCTGATCTGATAATCATCAGCTTCTCTTTTTTCCTTAATTTATGAGCTAAGAAGCAGTTACTTCAAGCCATTTCCTTTGAAAGTTCAATCTTTCAAGGTCAAAAGAGTTTCTTGAAATGCTTCAAAAATTGCATCTTTTTCTCATTTTGTGCTCAAAGGCAATTTCTTTTTGATAAAAAAGTGTCAAACTTTTTAATGCAGAACCTCAAGAATGCTACCAGTTGTCCTTGTTTTCTCAATCTGTGAGCTGAAAGACAGTTTTTTGGGTAATGGGTACTTAAAAGTTTCAACTTTTAACACTTCTCATCTTGAATTCTGTTGATTTTCGTTAAATTCTTCAATCTTCCCTCTCAATCTGTGAACTGAAAGACAGTTTTTTGGTTGAAAAATGCCTAATCTTGGAGTTAATAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333137" ref_strand="+" ref_description="SGN-E333137 [cTOD-19-B20]">
      <seq>taaaattgatcattcgctctcatttcattctcgtccttcctccctcgacgataccctttatctacaaaaaaaaataaaaatgcgtgaaattctccatatacaaggtggccaatgcggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcctggtactatggacagtgttagatctggaacttatggtcagatttttaggcctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgngaggagggactgggtctggaatggggacacttctcatttcaaagattcgagaggaatacccagataggatgatgctgacattctctgtcttcccatcgccaaaggtttcagacacagttgtagagccttacaatgctacattgtctgttcatcagcttgtagagaatgcagatgagtgcatggttcttgacaatgaggctttatatgacatttgtttccgaaccctncagcttacactcctagctttggtgattttgatcacttatatctgcaccatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28041" stop="30298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28341" g_stop="28813" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29996" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="742" r_length="269" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E333137" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28341" e_stop="28813"/>
          <exon e_start="29727" e_stop="29996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTGATCATTCGCTCTCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCATGGTTCTTGACAATGAGGCTTTATATGACATTTGTTTCCGAACCCTCAAGCTTACAACTCCTAGCT</genome_strand>
        <mrna_strand>TAAAATTGATCATTCGCTCTCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGNGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCATGGTTCTTGACAATGAGGCTTTATATGACATTTGTTTCCGAACCCTNCAGCTTAC-ACTCCTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363736" ref_strand="+" ref_description="SGN-E363736 [cLPP-3-M7]">
      <seq>taaaattgatcattcgctctcatttcattctcgtccttcctccctcgacgataccctgtacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggacacttctcatttcaaagattcgagaggaatacccagataggatgatgctgacattctctgtcttcccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28041" stop="30147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28341" g_stop="28813" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29847" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="594" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E363736" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28341" e_stop="28813"/>
          <exon e_start="29727" e_stop="29847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTGATCATTCGCTCTCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATC</genome_strand>
        <mrna_strand>TAAAATTGATCATTCGCTCTCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTGTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364521" ref_strand="+" ref_description="SGN-E364521 [cLPP-18-D21]">
      <seq>attgatcattcgctctcatttcattctcgtccttcctccctcgacgataccctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactccagagagtgaatgtatattataatgaggcgagttgtgggcgctttttaccttgagctgctcttatggaatttagagcccgggtctatggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28045" stop="28942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28345" g_stop="28642" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E364521" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28345" e_stop="28642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATCATTCGCTCTCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGG-ATTTAGAGCCTGGTACTATGGACA</genome_strand>
        <mrna_strand>ATTGATCATTCGCTCTCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCCAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTTTTACCTTGAGCTGCTCTTATGGAATTTAGAGCCCGGGTCTATGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362153" ref_strand="+" ref_description="SGN-E362153 [cLPP-11-F1]">
      <seq>gatcattcgctctcatttcattctcgtccttcctccctcgacgataccctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28048" stop="29061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28348" g_stop="28761" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E362153" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28348" e_stop="28761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCATTCGCTCTCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGAT</genome_strand>
        <mrna_strand>GATCATTCGCTCTCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747406" ref_strand="+" ref_description="SGN-E747406 [GI|47104556]">
      <seq>atcattcgctctcatttcattctcgtccttcctccctcgacgataccctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggacacttctcatttcaaagattcgagaggaatacccagataggatgatgctgacattctctgtcttcccatcgccaaaggtttcagacacagttgtagagccttacaatgctacattgtctgttcatcagcttgtagagaatgcagatgagtgcatggttcttgacaacgaggctttatatgacatttgtttccgaaccctcaaactaacaactcctagctttggtgatttgaatcacttaatatctgcaaccatgtccggagttacttgttgtctcagattccctggacagcttaactctgatctgaggaaacttgctgtgaatctcattcctttcccccgtcttcacttcttcatggttgggtttgctccacttacctcacgtggttcacaacagtaccgcgctttatctgttcctgagcttactcaacaaatgtgggatgcaaagaacatgatgtgtgctgctgaccctaggcatggccgctatttgacagcatcagcaatgtttagggggaaaatgagcaccaaggaagttgatgagcagatgcttaatgtgcagaacaaaaattcttcatacttcgttgagtggattcccaacaacgttaagtcaacagtctgtgatattccaccaactggtctaaagatggcatcgactttcattggaaattcaacctcaatacaagagatgttccgtcgtgtcagtgagcaattcacagccatgtttaggaggaaggctttcttgcattggtacacaggggaaggaatggatgagatggagttcactgaggcagagagcaacatgaatgatctggtctctgagtaccaacagtaccaagatgcagtagcagatgaggatgaaggatacgaggacgaagatgaagcatatcatgactagtatgcttatgccgggaaatcttatcttatattttaagtaatagttcgtttcaactgtgcatgaactttttagtagtgaagagaaagcgactaacctgtatttttgtcgaacttgtcactaccccttaattgcatattgaatatttgttgcttttgctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28049" stop="44356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28349" g_stop="28813" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29996" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="735" r_length="270" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29997" i_stop="30453" i_length="457">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30454" g_stop="31295" g_length="842"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="1575" r_length="840" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31296" i_stop="31360" i_length="65">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.761" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31361" g_stop="31369" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1576" r_stop="1584" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E747406" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>1586</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28349" e_stop="28813"/>
          <exon e_start="29727" e_stop="29996"/>
          <exon e_start="30454" e_stop="31295"/>
          <exon e_start="31361" e_stop="31369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTCGCTCTCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCATGGTTCTTGACAATGAGGCTTTATATGACATTTGTTTCCGAACCCTCAAGCTTACAACTCCTAGCTGTAAGTATTCTCTATTCATATTCAATGACATAACTCATATACTTATGTGTCTAGTTCAACAAGCAAAGATTTTGAGCTGTGGTGACAGAGTCTTCTAAAATGTTTGATGTTAGATAATTGAAACTAATATTCTGATTAGCGCCAGTGGCCTCCCATTTTTGCAGCCATTTCATTTTCTCTTTTCAGTTTCATTTTCTTAAAGCTTATCTTAATCAAACTTCATGAAATGTGTTTCATCAACTGTATAGTTATTAAAACTTTTCCTCAATTTTCATTCGTAGTCTAACTTTATATAGTGAATTTTTGCTTAGCTGACCATAACTCATTTGGGATTGAGGGTTGGTTGGTTGTGCTTGCTTAGCAATAAATTAATATGAATATGCTTCATGCTGAGGATCACTTATTCTGCATCTTAGAAAGTTATTCCTTTGCTGATGGTACTTTTATTTTCTAACAGTTGGTGATTTGAATCACTTAATATCTGCAACCATGTCCGGAGTTACTTGTTGTCTCAGATTCCCTGGACAGCTTAACTCTGATCTGAGGAAACTTGCTGTGAATCTCATTCCTTTCCCCCGTCTCCACTTCTTCATGGTTGGGTTTGTTCCACTTACCTCACGTGGTTCACAACAGTACCGCGCTTTATCTGTTCCTGAGCTTACTCAACAAATGTGGGATGCAAAGAACATGATGTGTGCTGCTGACCCTAGGCATGGCCGCTATTTGACAGCATCAGCAATGTTTAGGGGGAAAATGAGCACCAAGGAAGTTGATGAGCAGATGCTTAATGTGCAGAACAAAAATTCTTCATACTTCGTTGAGTGGATCCCCAACAACGTTAAGTCAACAGTCTGTGATATTCCACCAACTGGTCTAAAGATGGCATCGACTTTCATTGGAAATTCAACCTCAATACAAGAGATGTTCCGTCGTGTCAGTGAGCAATTCACAGCCATGTTTAGGAGGAAGGCTTTCTTGCATTGGTACACAGGGGAAGGAATGGATGAGATGGAGTTCACTGAGGCAGAGAGCAACATGAATGATCTGGTCTCTGAGTACCAACAGTACCAAGATGCAGTAGCAGATGAGGATGAAGGATACGAGGACGAAGATGAAGCATATCATGACTAGTATGCTTATGCCGGGAAATCTTATCTTATATTTTAAAAGTAATAGTTCGTTTCAACTGTGCATGAACTTTTTAGTAGTGAAGAGAAAGCGACTAACCTGTATTTTTGTCGAACTTGTCACTACCCCTTAATTGCATATTGAATATTTGTTGCTTTTGCTAAGCAATCTGTGATTGAGTAATGATAAAACATGCTGTAGTTGGTATATACTCATACTACTTACATTATGTCCAGTAAAATGAA</genome_strand>
        <mrna_strand>ATCATTCGCTCTCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCATGGTTCTTGACAACGAGGCTTTATATGACATTTGTTTCCGAACCCTCAAACTAACAACTCCTAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGATTTGAATCACTTAATATCTGCAACCATGTCCGGAGTTACTTGTTGTCTCAGATTCCCTGGACAGCTTAACTCTGATCTGAGGAAACTTGCTGTGAATCTCATTCCTTTCCCCCGTCTTCACTTCTTCATGGTTGGGTTTGCTCCACTTACCTCACGTGGTTCACAACAGTACCGCGCTTTATCTGTTCCTGAGCTTACTCAACAAATGTGGGATGCAAAGAACATGATGTGTGCTGCTGACCCTAGGCATGGCCGCTATTTGACAGCATCAGCAATGTTTAGGGGGAAAATGAGCACCAAGGAAGTTGATGAGCAGATGCTTAATGTGCAGAACAAAAATTCTTCATACTTCGTTGAGTGGATTCCCAACAACGTTAAGTCAACAGTCTGTGATATTCCACCAACTGGTCTAAAGATGGCATCGACTTTCATTGGAAATTCAACCTCAATACAAGAGATGTTCCGTCGTGTCAGTGAGCAATTCACAGCCATGTTTAGGAGGAAGGCTTTCTTGCATTGGTACACAGGGGAAGGAATGGATGAGATGGAGTTCACTGAGGCAGAGAGCAACATGAATGATCTGGTCTCTGAGTACCAACAGTACCAAGATGCAGTAGCAGATGAGGATGAAGGATACGAGGACGAAGATGAAGCATATCATGACTAGTATGCTTATGCCGGGAAATCTTATCTTATATTTT--AAGTAATAGTTCGTTTCAACTGTGCATGAACTTTTTAGTAGTGAAGAGAAAGCGACTAACCTGTATTTTTGTCGAACTTGTCACTACCCCTTAATTGCATATTGAATATTTGTTGCTTTTGCTAAAAAAAAA.................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362851" ref_strand="+" ref_description="SGN-E362851 [cLPP-2-L17]">
      <seq>tcattcgctctcatttcattctcgtccttcctccctcgacgataccctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggacacttctcatttcaaagattcgagaggaatacccagataggatgatgctgacattctctgtcttcccatcgccaaaggtttcagacacagttgtagagccttacaatgctacattgtctgttcatcagcttgtagagaatgcagatgagtgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28050" stop="30231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28350" g_stop="28813" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29931" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="669" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E362851" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28350" e_stop="28813"/>
          <exon e_start="29727" e_stop="29931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCGCTCTCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCAT</genome_strand>
        <mrna_strand>TCATTCGCTCTCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363261" ref_strand="+" ref_description="SGN-E363261 [cLPP-4-G21]">
      <seq>tcattcgctctcatttcattctcgtccttcctccctcgacgataccctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28050" stop="29073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28350" g_stop="28773" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E363261" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28350" e_stop="28773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCGCTCTCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGAT</genome_strand>
        <mrna_strand>TCATTCGCTCTCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360464" ref_strand="+" ref_description="SGN-E360464 [cLPP-8-A20]">
      <seq>cattcgctctcatttcattctcgtccttcctccctcgacgataccctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggacacttctcatttcaaagattcgagaggaatacccagataggatgatgctgacattctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28051" stop="30135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28351" g_stop="28813" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29835" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="572" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E360464" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28351" e_stop="28813"/>
          <exon e_start="29727" e_stop="29835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCGCTCTCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTC</genome_strand>
        <mrna_strand>CATTCGCTCTCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363424" ref_strand="+" ref_description="SGN-E363424 [cLPP-4-C8]">
      <seq>cattcgctctcatttcattctcgtccttcctccctcgacgataccctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaagtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28051" stop="28994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28351" g_stop="28694" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E363424" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28351" e_stop="28694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCGCTCTCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATT</genome_strand>
        <mrna_strand>CATTCGCTCTCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAAGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364620" ref_strand="+" ref_description="SGN-E364620 [cLPP-18-O3]">
      <seq>ttcgctctcatttcattctcgtgcttcctccctcgacgataccctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28053" stop="29040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28353" g_stop="28740" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E364620" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28353" e_stop="28740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCTCTCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACT</genome_strand>
        <mrna_strand>TTCGCTCTCATTTCATTCTCGTGCTTCCTCCCTCGACGATACCCTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361914" ref_strand="+" ref_description="SGN-E361914 [cLPP-11-C23]">
      <seq>tctcattcattctcgtccttcctccctcgacgataccctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgaattgattgattccgttctcgatgttgttaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28058" stop="29085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28358" g_stop="28785" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E361914" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28358" e_stop="28785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAA</genome_strand>
        <mrna_strand>TCTCA-TTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAATTGATTGATTCCGTTCTCGATGTTGTTAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361268" ref_strand="+" ref_description="SGN-E361268 [cLPP-15-P17]">
      <seq>ctcattggattctcgtccttcctccctggacgataccctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggcttaaggtcattatactgaaagtgctgagttgattgattccgttctcgatgtttgtaggaaagaagctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28059" stop="29094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28359" g_stop="28794" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E361268" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28359" e_stop="28794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAG</genome_strand>
        <mrna_strand>CTCATTGGATTCTCGTCCTTCCTCCCTGGACGATACCCTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTTAAGGTCATTATACTGAAAGTGCTGAGTTGATTGATTCCGTTCTCGATGTTTGTAGGAAAGAAGCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360978" ref_strand="+" ref_description="SGN-E360978 [cLPP-13-J17]">
      <seq>tcatttcattctcgtccttcctccctcgacgataccctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtgataattgggctaaaagtcattatactgaaggtgctgagttgattgattccggtctcgatgttgttaggaaagaagctgagaattgtgattgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28060" stop="29109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28360" g_stop="28809" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E360978" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28360" e_stop="28809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTA</genome_strand>
        <mrna_strand>TCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTGATAATTGGGCTAAAAGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGGTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360853" ref_strand="+" ref_description="SGN-E360853 [cLPP-7-J4]">
      <seq>tcatttcattctcgtccttcctccctcgacgataccctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28060" stop="29060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28360" g_stop="28760" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E360853" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28360" e_stop="28760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGA</genome_strand>
        <mrna_strand>TCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334216" ref_strand="+" ref_description="SGN-E334216 [cTOD-21-D6]">
      <seq>tcatttcattctcgtccttcctccctcgacgataccctttatctacaaaaaaaaataaaaatgcgtgaaattctccatatacaaggtggccaatgcggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgangcgagttgtgggcgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28060" stop="28895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28360" g_stop="28595" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E334216" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28360" e_stop="28595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTT</genome_strand>
        <mrna_strand>TCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGANGCGAGTTGTGGGCGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360974" ref_strand="+" ref_description="SGN-E360974 [cLPP-13-H19]">
      <seq>tttcattctcgtccttcctccctcgacgataccctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggacacttctcatttcaaagattcgagaggaatacccagataggatgatgctgacattctctgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28063" stop="30141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28363" g_stop="28813" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29841" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="566" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E360974" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28363" e_stop="28813"/>
          <exon e_start="29727" e_stop="29841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTT</genome_strand>
        <mrna_strand>TTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360850" ref_strand="+" ref_description="SGN-E360850 [cLPP-7-H20]">
      <seq>attctcgtccttcctccctcgacgataccctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28067" stop="29109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28367" g_stop="28809" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E360850" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28367" e_stop="28809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCGTCCTTCCTCCCTCGACGATACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTA</genome_strand>
        <mrna_strand>ATTCTCGTCCTTCCTCCCTCGACGATACCCTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364649" ref_strand="+" ref_description="SGN-E364649 [cLPP-18-O14]">
      <seq>tccctcgacgataccctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttggtacctcgtgctgttcttatggatttagagcccagtactatggacaccgttaaatctggaacttatggtcacatttttagacctgataaactagtattctgtcaatctggtgccggtaattattgggctaaaggtcattatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28081" stop="29039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28381" g_stop="28739" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E364649" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28381" e_stop="28739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCGACGATACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATAC</genome_strand>
        <mrna_strand>TCCCTCGACGATACCCTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTGGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCAGTACTATGGACACCGTTAAATCTGGAACTTATGGTCACATTTTTAGACCTGATAAACTAGTATTCTGTCAATCTGGTGCCGGTAATTATTGGGCTAAAGGTCATTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359929" ref_strand="+" ref_description="SGN-E359929 [cLPP-9-A9]">
      <seq>ctcgacgataccctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28084" stop="29084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28384" g_stop="28784" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E359929" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28384" e_stop="28784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGACGATACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAA</genome_strand>
        <mrna_strand>CTCGACGATACCCTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362879" ref_strand="+" ref_description="SGN-E362879 [cLPP-2-F24]">
      <seq>tcgacgataccctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggacacttctcattttaaagattcgagaggaatacccagataggatgatgctgacattctctgtcttcccatcgccaaaggtttcagacacagttgtagagccttacaatgctacattgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28085" stop="30195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28385" g_stop="28813" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29895" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="598" r_length="169" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E362879" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28385" e_stop="28813"/>
          <exon e_start="29727" e_stop="29895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACGATACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTC</genome_strand>
        <mrna_strand>TCGACGATACCCTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTTAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362290" ref_strand="+" ref_description="SGN-E362290 [cLPP-10-L5]">
      <seq>tcgacgataccctttacctacgggaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcagtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28085" stop="29050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28385" g_stop="28750" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E362290" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28385" e_stop="28750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACGATACCCTTTATCTAC-AAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTG</genome_strand>
        <mrna_strand>TCGACGATACCCTTTACCTACGGGAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCAGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359597" ref_strand="+" ref_description="SGN-E359597 [cLPP-5-K8]">
      <seq>acgataccctgtgcctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcatacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccagtaataattgggctaaaggtcattatactgaaggcgctgagttgattgattccgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28088" stop="29067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28388" g_stop="28767" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E359597" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28388" e_stop="28767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGATACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTT</genome_strand>
        <mrna_strand>ACGATACCCTGTGCCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCATACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCAGTAATAATTGGGCTAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATTCCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363011" ref_strand="+" ref_description="SGN-E363011 [cLPP-2-D21]">
      <seq>taccctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggacacttctcatttcaaagattcgagaggaatacccagataggatgatgctgacattctctgtcttcccatcgccaaaggtttcagacacagttgtagagccttacaatgctacattgtctgttcatcagcttgtagagaatgcagatgagtgcatggttcttgacaacgaggctttatatgacatttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28092" stop="30267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28392" g_stop="28813" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29967" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="663" r_length="241" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E363011" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28392" e_stop="28813"/>
          <exon e_start="29727" e_stop="29967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCATGGTTCTTGACAATGAGGCTTTATATGACATTTGTTT</genome_strand>
        <mrna_strand>TACCCTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCATGGTTCTTGACAACGAGGCTTTATATGACATTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363824" ref_strand="+" ref_description="SGN-E363824 [cLPP-3-H6]">
      <seq>taccctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggacacttctcatttcaaagattcgagaggaatacccagataggatgatgctgacattctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28092" stop="30137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28392" g_stop="28813" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29837" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="533" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E363824" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28392" e_stop="28813"/>
          <exon e_start="29727" e_stop="29837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTG</genome_strand>
        <mrna_strand>TACCCTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362147" ref_strand="+" ref_description="SGN-E362147 [cLPP-11-D3]">
      <seq>taccctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28092" stop="30079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28392" g_stop="28813" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29779" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="475" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E362147" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28392" e_stop="28813"/>
          <exon e_start="29727" e_stop="29779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACA</genome_strand>
        <mrna_strand>TACCCTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361072" ref_strand="+" ref_description="SGN-E361072 [cLPP-13-C6]">
      <seq>cctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28095" stop="28992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28395" g_stop="28692" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E361072" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28395" e_stop="28692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTA</genome_strand>
        <mrna_strand>CCTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360310" ref_strand="+" ref_description="SGN-E360310 [cLPP-8-K3]">
      <seq>ctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggacacttctcatttcaaagattcgagaggaatacccagataggatgatgctgacattctctgtcttcccatcgccaaaggtttcagacacagttgtagagccttacaatgctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28096" stop="30190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28396" g_stop="28813" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29890" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="582" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E360310" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28396" e_stop="28813"/>
          <exon e_start="29727" e_stop="29890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACA</genome_strand>
        <mrna_strand>CTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364173" ref_strand="+" ref_description="SGN-E364173 [cLPP-16-J19]">
      <seq>ctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggacacttctcatttcaaagattcgagaggaatacccagataggatgatgctgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28096" stop="30131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28396" g_stop="28813" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29831" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="523" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E364173" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28396" e_stop="28813"/>
          <exon e_start="29727" e_stop="29831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACAT</genome_strand>
        <mrna_strand>CTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331758" ref_strand="+" ref_description="SGN-E331758 [cTOD-7-A19]">
      <seq>ctttatctacaaaaaaaaataaaaatgcgtgaaattctccatatacaaggtggccaatgcggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcctggtactatggacagtgttagatctggaacttatggtcagatttttaggcctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggacacttctcatttcaaagattcgagaggaatacccagataggatgatgctgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28096" stop="30131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28396" g_stop="28813" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29831" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="523" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E331758" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28396" e_stop="28813"/>
          <exon e_start="29727" e_stop="29831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACAT</genome_strand>
        <mrna_strand>CTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360753" ref_strand="+" ref_description="SGN-E360753 [cLPP-7-K9]">
      <seq>ctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggacacttctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28096" stop="30086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28396" g_stop="28813" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29786" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="478" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E360753" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28396" e_stop="28813"/>
          <exon e_start="29727" e_stop="29786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCA</genome_strand>
        <mrna_strand>CTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360927" ref_strand="+" ref_description="SGN-E360927 [cLPP-13-C10]">
      <seq>ctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28096" stop="30049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28396" g_stop="28813" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29749" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="441" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E360927" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28396" e_stop="28813"/>
          <exon e_start="29727" e_stop="29749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTG</genome_strand>
        <mrna_strand>CTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360790" ref_strand="+" ref_description="SGN-E360790 [cLPP-7-M18]">
      <seq>ctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccagtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28096" stop="29086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28396" g_stop="28786" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E360790" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28396" e_stop="28786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAG</genome_strand>
        <mrna_strand>CTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCAGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364416" ref_strand="+" ref_description="SGN-E364416 [cLPP-20-O4]">
      <seq>ctttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattctgtcaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28096" stop="29005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28396" g_stop="28705" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E364416" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28396" e_stop="28705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTG</genome_strand>
        <mrna_strand>CTTTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCTGTCAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362969" ref_strand="+" ref_description="SGN-E362969 [cLPP-2-G6]">
      <seq>ttacctacaaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggacacttctcatttcaaagattcgagaggaatacccagataggatgatgctgacattctctgtcttcccatcgccaaaggtttcagacacagttgtagagccttacaatgctacattgtctgttcatcagcttgtagagaatgcagatgagtgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28098" stop="30231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28398" g_stop="28813" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29931" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="621" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E362969" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28398" e_stop="28813"/>
          <exon e_start="29727" e_stop="29931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCAT</genome_strand>
        <mrna_strand>TTACCTACAAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378417" ref_strand="+" ref_description="SGN-E378417 [TUS-33-N24]">
      <seq>aacgaggaagaaaagaaaatgcgtgatatcctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggacacttctcatttcaaagattcgagaggaatacccagataggatgatgctgacattctctgtcttcccatcgccaaaggtttcagacacagttgtagagccttacaatgctacattgtctgttcatcagcttgtagagaatgcagatgagtgcatggttcttgacaacgaggctttatatgacatttgtttccgaaccctcaaactaacaactcctagctttggtgatttgaatcacttaatatctgcaaccatgtccggagttacttgttgtctcagattccctggacagcttaactctgatctgaggaaacttgctgtgaatctcattcctttcccccgtcttcacttcttcatggttgggtttgctccacttacctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28104" stop="30915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28400" g_stop="28813" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29996" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="682" r_length="270" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29997" i_stop="30453" i_length="457">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30454" g_stop="30615" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="844" r_length="162" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E378417" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28400" e_stop="28813"/>
          <exon e_start="29727" e_stop="29996"/>
          <exon e_start="30454" e_stop="30615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCATGGTTCTTGACAATGAGGCTTTATATGACATTTGTTTCCGAACCCTCAAGCTTACAACTCCTAGCTGTAAGTATTCTCTATTCATATTCAATGACATAACTCATATACTTATGTGTCTAGTTCAACAAGCAAAGATTTTGAGCTGTGGTGACAGAGTCTTCTAAAATGTTTGATGTTAGATAATTGAAACTAATATTCTGATTAGCGCCAGTGGCCTCCCATTTTTGCAGCCATTTCATTTTCTCTTTTCAGTTTCATTTTCTTAAAGCTTATCTTAATCAAACTTCATGAAATGTGTTTCATCAACTGTATAGTTATTAAAACTTTTCCTCAATTTTCATTCGTAGTCTAACTTTATATAGTGAATTTTTGCTTAGCTGACCATAACTCATTTGGGATTGAGGGTTGGTTGGTTGTGCTTGCTTAGCAATAAATTAATATGAATATGCTTCATGCTGAGGATCACTTATTCTGCATCTTAGAAAGTTATTCCTTTGCTGATGGTACTTTTATTTTCTAACAGTTGGTGATTTGAATCACTTAATATCTGCAACCATGTCCGGAGTTACTTGTTGTCTCAGATTCCCTGGACAGCTTAACTCTGATCTGAGGAAACTTGCTGTGAATCTCATTCCTTTCCCCCGTCTCCACTTCTTCATGGTTGGGTTTGTTCCACTTACCTCAC</genome_strand>
        <mrna_strand>AACGAGGAAGAAAA--GAAAATGCGTGATATCCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCATGGTTCTTGACAACGAGGCTTTATATGACATTTGTTTCCGAACCCTCAAACTAACAACTCCTAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGATTTGAATCACTTAATATCTGCAACCATGTCCGGAGTTACTTGTTGTCTCAGATTCCCTGGACAGCTTAACTCTGATCTGAGGAAACTTGCTGTGAATCTCATTCCTTTCCCCCGTCTTCACTTCTTCATGGTTGGGTTTGCTCCACTTACCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364526" ref_strand="+" ref_description="SGN-E364526 [cLPP-18-F9]">
      <seq>aaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaagtgtgtcattccctgggaggagggactgggtctggaatggggacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28108" stop="30080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28406" g_stop="28813" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29780" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="462" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E364526" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28406" e_stop="28813"/>
          <exon e_start="29727" e_stop="29780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACAC</genome_strand>
        <mrna_strand>AAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAAGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364422" ref_strand="+" ref_description="SGN-E364422 [cLPP-20-B14]">
      <seq>aaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28108" stop="29062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28406" g_stop="28762" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E364422" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28406" e_stop="28762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATT</genome_strand>
        <mrna_strand>AAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361465" ref_strand="+" ref_description="SGN-E361465 [cLPP-6-N8]">
      <seq>aaaaagaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgtgagatctggaacttatggtcagatttttagacctgataactttgtattcagtcaatctggtgccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28108" stop="29011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28406" g_stop="28711" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E361465" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28406" e_stop="28711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCG</genome_strand>
        <mrna_strand>AAAAAGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTGAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCAGTCAATCTGGTGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362899" ref_strand="+" ref_description="SGN-E362899 [cLPP-2-N2]">
      <seq>agaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggacacttctcatttcaaagattcgagaggaatacccagataggatgatgctgacattctctgtcttcccatcgccaaaggtttcagacacagttgtagagccttacaatgctacattgtctgttcatcagcttgtagagaatgcaaatgagtgcatggttcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28112" stop="30241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28410" g_stop="28813" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29941" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="619" r_length="215" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E362899" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28410" e_stop="28813"/>
          <exon e_start="29727" e_stop="29941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCATGGTTCTTGAC</genome_strand>
        <mrna_strand>AGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAAATGAGTGCATGGTTCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363047" ref_strand="+" ref_description="SGN-E363047 [cLPP-2-P5]">
      <seq>agaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggacacttctcatttcaaagattcgagaggaatacccagataggatgatgctgacattctctgtcttcccatcgccaaaggtttcagacacagttgtagagccttacaatgctacattgtctgttcatcagcttgtagagaatgcagatgagtgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28112" stop="30231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28410" g_stop="28813" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29931" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="609" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E363047" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28410" e_stop="28813"/>
          <exon e_start="29727" e_stop="29931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCAT</genome_strand>
        <mrna_strand>AGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361708" ref_strand="+" ref_description="SGN-E361708 [cLPP-12-N21]">
      <seq>agaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggacacttctcatttcaaagattcgagaggaatacccagataggatgatgctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28112" stop="30129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28410" g_stop="28813" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29829" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="507" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E361708" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28410" e_stop="28813"/>
          <exon e_start="29727" e_stop="29829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGAC</genome_strand>
        <mrna_strand>AGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374323" ref_strand="+" ref_description="SGN-E374323 [TUS-33-N24]">
      <seq>agaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28112" stop="28970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28410" g_stop="28670" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E374323" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28410" e_stop="28670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGAT</genome_strand>
        <mrna_strand>AGAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362993" ref_strand="+" ref_description="SGN-E362993 [cLPP-2-O2]">
      <seq>gaaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggccagttgtgggcgcttcggacctcgtgctgatcttatggatttagagcccggaactatggacaaagttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaagtgctgagttgattgattccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28112" stop="29065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28411" g_stop="28765" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E362993" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28411" e_stop="28765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCG</genome_strand>
        <mrna_strand>GAAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCCAGTTGTGGGCGCTTCGGACCTCGTGCTGATCTTATGGATTTAGAGCCCGGAACTATGGACAAAGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAAGTGCTGAGTTGATTGATTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363312" ref_strand="+" ref_description="SGN-E363312 [cLPP-4-D15]">
      <seq>aaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaagtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgataatcgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28113" stop="30081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28412" g_stop="28813" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29781" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="457" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E363312" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28412" e_stop="28813"/>
          <exon e_start="29727" e_stop="29781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACT</genome_strand>
        <mrna_strand>AAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAAGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGATAATCGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363307" ref_strand="+" ref_description="SGN-E363307 [cLPP-4-B15]">
      <seq>aaaagaaaatgcgtgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaagtgctgagttgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28113" stop="29059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28412" g_stop="28759" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E363307" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28412" e_stop="28759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTG</genome_strand>
        <mrna_strand>AAAAGAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAAGTGCTGAGTTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333168" ref_strand="+" ref_description="SGN-E333168 [cTOD-19-L20]">
      <seq>aatgcgtgaaattctccatatacaaggtggccaatgcggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcctggtactatggacagtgttagatctggaacttatggtcagatttttaggcctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgngaggagggactgggtctggaatggggacacttctcatttcaaagattcgagaggaatacccagataggatgatgctgacattctctgtcttcccatcgccaaaggtttcagacacagttgtagagccttacaatgctacattgtctgttcatcagcttgtagagaatgcagatgagtgcatggttcttgacaatgaggctttatatgacatttgtttccgaanccctcagcttacaactcctagctttggtgatttgaatcacttaatatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28119" stop="30780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28419" g_stop="28813" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29996" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="665" r_length="270" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29997" i_stop="30453" i_length="457">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.901" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30454" g_stop="30480" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="692" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E333168" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28419" e_stop="28813"/>
          <exon e_start="29727" e_stop="29996"/>
          <exon e_start="30454" e_stop="30480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCATGGTTCTTGACAATGAGGCTTTATATGACATTTGTTTCCGAACCCTCAAGCTTACAACTCCTAGCTGTAAGTATTCTCTATTCATATTCAATGACATAACTCATATACTTATGTGTCTAGTTCAACAAGCAAAGATTTTGAGCTGTGGTGACAGAGTCTTCTAAAATGTTTGATGTTAGATAATTGAAACTAATATTCTGATTAGCGCCAGTGGCCTCCCATTTTTGCAGCCATTTCATTTTCTCTTTTCAGTTTCATTTTCTTAAAGCTTATCTTAATCAAACTTCATGAAATGTGTTTCATCAACTGTATAGTTATTAAAACTTTTCCTCAATTTTCATTCGTAGTCTAACTTTATATAGTGAATTTTTGCTTAGCTGACCATAACTCATTTGGGATTGAGGGTTGGTTGGTTGTGCTTGCTTAGCAATAAATTAATATGAATATGCTTCATGCTGAGGATCACTTATTCTGCATCTTAGAAAGTTATTCCTTTGCTGATGGTACTTTTATTTTCTAACAGTTGGTGATTTGAATCACTTAATATCTG</genome_strand>
        <mrna_strand>AATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGNGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCATGGTTCTTGACAATGAGGCTTTATATGACATTTGTTTCCGAANCCCTCAGCTTACAACTCCTAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGATTTGAATCACTTAATATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334072" ref_strand="+" ref_description="SGN-E334072 [cTOD-24-L11]">
      <seq>aatgcgtgaaattctccatatacaaggtggccaatgcggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcctggtactatggacagtgttagatctggaacttatggtcagatttttaggcctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgngaggagggactgggtctggaatggggacacttctcatttcaaagattcgagaggaatacccagataggatgatgctgacattctctgtcttcccatcgccaaaggtttcagacacagttgtagagccttacaatgctacattgtctgttcatcagcttgtagagaatgcagatgagtgcatggttcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28119" stop="30240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28419" g_stop="28813" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29940" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="609" r_length="214" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E334072" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28419" e_stop="28813"/>
          <exon e_start="29727" e_stop="29940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCATGGTTCTTGA</genome_strand>
        <mrna_strand>AATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGNGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCATGGTTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333374" ref_strand="+" ref_description="SGN-E333374 [cTOD-20-E2]">
      <seq>aatgcgtgaaattctccatatacaaggtggccaatgcggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcctggtactatggacagtgttagatctggaacttatggtcagatttttaggcctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggacacttctcatttcaaagattcgagaggaatacccagataggatgatgctgacattctctgtcttcccatcggccaaagtttcagacacagttgtagagccttacaatgctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28119" stop="30189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28419" g_stop="28813" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29889" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="558" r_length="163" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E333374" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28419" e_stop="28813"/>
          <exon e_start="29727" e_stop="29889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTAC</genome_strand>
        <mrna_strand>AATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGGCCAAAGTTTCAGACACAGTTGTAGAGCCTTACAATGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362056" ref_strand="+" ref_description="SGN-E362056 [cLPP-11-P4]">
      <seq>tgaaattctccatatacaaggtggccaatgtggcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28125" stop="30078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28425" g_stop="28813" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29778" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="441" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E362056" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28425" e_stop="28813"/>
          <exon e_start="29727" e_stop="29778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGAC</genome_strand>
        <mrna_strand>TGAAATTCTCCATATACAAGGTGGCCAATGTGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360782" ref_strand="+" ref_description="SGN-E360782 [cLPP-7-I18]">
      <seq>gcaaccaaatcggggctaagttttgggaggtggtatgcgccgagcatgggattgatgcaaccggcgcgtaccatggggagtcagatattcaactcgagagagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaagtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcacgtgtgtcattccctgggaggagggactgggtctggaatggggacacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28157" stop="30083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28457" g_stop="28813" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29783" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="414" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E360782" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28457" e_stop="28813"/>
          <exon e_start="29727" e_stop="29783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTC</genome_strand>
        <mrna_strand>GCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAAGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCACGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362606" ref_strand="-" ref_description="SGN-E362606 [cLPP-1-N17]">
      <seq>agagtgaatgtatattataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggacacttctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28255" stop="30086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28555" g_stop="28813" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29786" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="319" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E362606" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362606" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28555" e_stop="28813"/>
          <exon e_start="29727" e_stop="29786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCA</genome_strand>
        <mrna_strand>AGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364401" ref_strand="+" ref_description="SGN-E364401 [cLPP-20-K2]">
      <seq>ttataatgaggcgagttgtgggcgcttcgtacctcgtgctgttcttatggatttagagcccggtactatggacagtgttagatctggaacttatggtcagatttttagacctgataactttgtattcggtcaatctggtgccggtaataattgggctaaaggtcattatactgaaggtgctgagttgattgattccgttctcgatgttgttaggaaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggacacttctcatttcaaagattcgagaggaatacccagataggatgatgctgacattctctgtcttcccatcgccaaaagtttcagacacagttgtagagccttacaatgctacattgtctgttcatcagcttgtagagaatgcagatgagtgcatggttcttgacaacgaggctttatatgacatttgtttccgaaccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28269" stop="30277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28569" g_stop="28813" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29977" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="496" r_length="251" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E364401" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28569" e_stop="28813"/>
          <exon e_start="29727" e_stop="29977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCATGGTTCTTGACAATGAGGCTTTATATGACATTTGTTTCCGAACCCTC</genome_strand>
        <mrna_strand>TTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCCGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGACCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAAGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCATGGTTCTTGACAACGAGGCTTTATATGACATTTGTTTCCGAACCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333729" ref_strand="+" ref_description="SGN-E333729 [cTOD-22-A18]">
      <seq>aaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggacacttctcatttcaaagattcgagaggaatacccagataggatgatgctgacattctctgtcttcccatcgccaaaggtttcagacacagttgtagagccttacaatgctacattgtctgttcatcagcttgtagagaatgcagatgagtgcatggttcttgacaatgaggctttatatgacatttgtttccgaaccctcaagcttacaactcctagctttggtgatttgaatcacttaatatctgcaaccatgtccggagttacttgttgtctcagattccctggacagcttaactctgatctgaggaaacttgctgtgaatctcattcctttcccccgtctccacttcttcatggttgggtttgttccacttacctcacgtggttcacaacagtaccgcgctttatctgttcctgagcttactcaacaaatgtgggatgcaaagaacatgatgtgtgctgctgaccctaggcatggccgctatttgacagcatcagcaatgtttagggggaaaatgagcaccaaggaagttgatgagcagatgcttaatgtgcagaacaaaaattcttcatacttcgttgagtggatcccccacaacgttaagtcaacagtctgtgatattccaccaactggtctaaagatggcatcgactttcattggaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28483" stop="31200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28783" g_stop="28813" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29996" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="301" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29997" i_stop="30453" i_length="457">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30454" g_stop="30900" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="748" r_length="447" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E333729" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28783" e_stop="28813"/>
          <exon e_start="29727" e_stop="29996"/>
          <exon e_start="30454" e_stop="30900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCATGGTTCTTGACAATGAGGCTTTATATGACATTTGTTTCCGAACCCTCAAGCTTACAACTCCTAGCTGTAAGTATTCTCTATTCATATTCAATGACATAACTCATATACTTATGTGTCTAGTTCAACAAGCAAAGATTTTGAGCTGTGGTGACAGAGTCTTCTAAAATGTTTGATGTTAGATAATTGAAACTAATATTCTGATTAGCGCCAGTGGCCTCCCATTTTTGCAGCCATTTCATTTTCTCTTTTCAGTTTCATTTTCTTAAAGCTTATCTTAATCAAACTTCATGAAATGTGTTTCATCAACTGTATAGTTATTAAAACTTTTCCTCAATTTTCATTCGTAGTCTAACTTTATATAGTGAATTTTTGCTTAGCTGACCATAACTCATTTGGGATTGAGGGTTGGTTGGTTGTGCTTGCTTAGCAATAAATTAATATGAATATGCTTCATGCTGAGGATCACTTATTCTGCATCTTAGAAAGTTATTCCTTTGCTGATGGTACTTTTATTTTCTAACAGTTGGTGATTTGAATCACTTAATATCTGCAACCATGTCCGGAGTTACTTGTTGTCTCAGATTCCCTGGACAGCTTAACTCTGATCTGAGGAAACTTGCTGTGAATCTCATTCCTTTCCCCCGTCTCCACTTCTTCATGGTTGGGTTTGTTCCACTTACCTCACGTGGTTCACAACAGTACCGCGCTTTATCTGTTCCTGAGCTTACTCAACAAATGTGGGATGCAAAGAACATGATGTGTGCTGCTGACCCTAGGCATGGCCGCTATTTGACAGCATCAGCAATGTTTAGGGGGAAAATGAGCACCAAGGAAGTTGATGAGCAGATGCTTAATGTGCAGAACAAAAATTCTTCATACTTCGTTGAGTGGATCCCCAACAACGTTAAGTCAACAGTCTGTGATATTCCACCAACTGGTCTAAAGATGGCATCGACTTTCATTGGAAATT</genome_strand>
        <mrna_strand>AAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCATGGTTCTTGACAATGAGGCTTTATATGACATTTGTTTCCGAACCCTCAAGCTTACAACTCCTAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGATTTGAATCACTTAATATCTGCAACCATGTCCGGAGTTACTTGTTGTCTCAGATTCCCTGGACAGCTTAACTCTGATCTGAGGAAACTTGCTGTGAATCTCATTCCTTTCCCCCGTCTCCACTTCTTCATGGTTGGGTTTGTTCCACTTACCTCACGTGGTTCACAACAGTACCGCGCTTTATCTGTTCCTGAGCTTACTCAACAAATGTGGGATGCAAAGAACATGATGTGTGCTGCTGACCCTAGGCATGGCCGCTATTTGACAGCATCAGCAATGTTTAGGGGGAAAATGAGCACCAAGGAAGTTGATGAGCAGATGCTTAATGTGCAGAACAAAAATTCTTCATACTTCGTTGAGTGGATCCCCCACAACGTTAAGTCAACAGTCTGTGATATTCCACCAACTGGTCTAAAGATGGCATCGACTTTCATTGGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333736" ref_strand="+" ref_description="SGN-E333736 [cTOD-22-E14]">
      <seq>aaagaagctgagaattgtgattgtctacaagggtttcaggtgtgtcattccctgggaggagggactgggtctggaatggggacacttctcatttcaaagattcgagaggaatacccagataggatgatgctgacattctctgtcttcccatcgccaaaggtttcagacacagttgtagagccttacaatgctacattgtctgttcatcagcttgtagagaatgcagatgagtgcatggttcttgacaatgaggctttatatgacatttgtttccgaaccctcaagcttacaactcctagctttggtgatttgaatcacttaatatctgcaaccatgtccggagttacttgttgtctcagattccctggacagcttaactctgatctgaggaaacttgctgtgaatctcattcctttcccccgtctccacttcttcatggttgggtttgttccacttacctcacgtggttcacaacagtaccgcgctttatctgttcctgagcttactcaacaaatgtgggatgcaaagaacatgatgtgtgctgctgaccctangcatggccgctatttgacagcatcagcaatgtttanggggaaaatgagcaccaaggaagttgatgagcagatgcttaatgtgcagaacaaaaattcttcatacttcgttgagtggatccccacaacgttaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28483" stop="31140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28783" g_stop="28813" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29727" g_stop="29996" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="301" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29997" i_stop="30453" i_length="457">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30454" g_stop="30840" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="687" r_length="386" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E333736" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28783" e_stop="28813"/>
          <exon e_start="29727" e_stop="29996"/>
          <exon e_start="30454" e_stop="30840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGCTGAGAATTGTGATTGTCTACAAGGTATTTTGTTTCAATGTTGCTTCATATCTTTTGATTTTTTCAACTTTTTTTTAAAAAATTGATTTGAGAAGGTGTAATTGTGATGCTTATGTGTATTTTTCATTTGTTAATTGGTGCTGGTTGTTTTTGATGCTATAAGTTTATGGTTTTACTCGTTTGAGAAGCTTCAAATTATCTTTGCCTTAAATGTTTATGTGTTTGTTATATTTGGTTATGCGTGCTGATTGTTTTTGATATTGTTTGTAAACAAACTGACAATTTGTTTAAATGTTTATGTATGATATTGGTTTGTTAACTTGTGCTGATTGTTTTTTTTTTTATATTGAAAGTTCTGTGGGTTTTTATCATTGAGAAGCTGAAATCACAAACGTTTGAACATAAATCGTAATGCTGCCAAGGTGTTTGTTTGAATGCGTATGCATGACATGATGTATTTTTGTTAATTTGAGAAGCATAAAATCGTGATCGCTTAAATGTTTGTAATTGCCTACATGGTGCTGTTTAAATGCTTGTGTGTATACTGATTTGTTTATCTTGTGGGATTATGTTTGATATGGTATATTCAATAATTTTACCTTTTCATATATGCTTGTGAGAGAATTTATAGTTTTAGAGAATCTCGACTTGGTTTGTAACTTGAACATCGAATGAATCAATGGTTGGTACACCACAGTGGGTGCTATGTTGATTGAATCTATTCTTGAGGTTGTGCACAAGTAACCTGAAAATTGCTATTGCCTAAAGGTGTTCTCGAAATGTTTGTACATATTATAAACTTGTGGAATTGGTTCAACTATCAGCCTATCACAACTTCTAATGTTTATTGATTTCATTTGCCTGTGGTTTTATTTTTTTTGGGTATATACATAATCATACATGCACCATTGTTGCTTATATGTGTGACTATACGCAGGGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCATGGTTCTTGACAATGAGGCTTTATATGACATTTGTTTCCGAACCCTCAAGCTTACAACTCCTAGCTGTAAGTATTCTCTATTCATATTCAATGACATAACTCATATACTTATGTGTCTAGTTCAACAAGCAAAGATTTTGAGCTGTGGTGACAGAGTCTTCTAAAATGTTTGATGTTAGATAATTGAAACTAATATTCTGATTAGCGCCAGTGGCCTCCCATTTTTGCAGCCATTTCATTTTCTCTTTTCAGTTTCATTTTCTTAAAGCTTATCTTAATCAAACTTCATGAAATGTGTTTCATCAACTGTATAGTTATTAAAACTTTTCCTCAATTTTCATTCGTAGTCTAACTTTATATAGTGAATTTTTGCTTAGCTGACCATAACTCATTTGGGATTGAGGGTTGGTTGGTTGTGCTTGCTTAGCAATAAATTAATATGAATATGCTTCATGCTGAGGATCACTTATTCTGCATCTTAGAAAGTTATTCCTTTGCTGATGGTACTTTTATTTTCTAACAGTTGGTGATTTGAATCACTTAATATCTGCAACCATGTCCGGAGTTACTTGTTGTCTCAGATTCCCTGGACAGCTTAACTCTGATCTGAGGAAACTTGCTGTGAATCTCATTCCTTTCCCCCGTCTCCACTTCTTCATGGTTGGGTTTGTTCCACTTACCTCACGTGGTTCACAACAGTACCGCGCTTTATCTGTTCCTGAGCTTACTCAACAAATGTGGGATGCAAAGAACATGATGTGTGCTGCTGACCCTAGGCATGGCCGCTATTTGACAGCATCAGCAATGTTTAGGGGGAAAATGAGCACCAAGGAAGTTGATGAGCAGATGCTTAATGTGCAGAACAAAAATTCTTCATACTTCGTTGAGTGGATCCCCAACAACGTTAAGT</genome_strand>
        <mrna_strand>AAAGAAGCTGAGAATTGTGATTGTCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCATGGTTCTTGACAATGAGGCTTTATATGACATTTGTTTCCGAACCCTCAAGCTTACAACTCCTAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGATTTGAATCACTTAATATCTGCAACCATGTCCGGAGTTACTTGTTGTCTCAGATTCCCTGGACAGCTTAACTCTGATCTGAGGAAACTTGCTGTGAATCTCATTCCTTTCCCCCGTCTCCACTTCTTCATGGTTGGGTTTGTTCCACTTACCTCACGTGGTTCACAACAGTACCGCGCTTTATCTGTTCCTGAGCTTACTCAACAAATGTGGGATGCAAAGAACATGATGTGTGCTGCTGACCCTANGCATGGCCGCTATTTGACAGCATCAGCAATGTTTANGGGGAAAATGAGCACCAAGGAAGTTGATGAGCAGATGCTTAATGTGCAGAACAAAAATTCTTCATACTTCGTTGAGTGGATCCCC-ACAACGTTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363311" ref_strand="+" ref_description="SGN-E363311 [cLPP-4-D13]">
      <seq>tttgtttccgaaccctcaaactaacaactcctagctttggtgatttgaatcacttaatatctgcaaccatgtccggagttacttgttgtctcagattccctggacagcttaactctgatctgaggaaacttgctgtgaatctcattcctttcccccgtcttcacttcttcatggttgggtttgctccacttacctcacgtggttcacaacagtaccgcgctttatctgttcctgagcttactcaacaaatgtgggatgcaaagaacatgatgtgtgctgctgaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29661" stop="31003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29961" g_stop="29996" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29997" i_stop="30453" i_length="457">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30454" g_stop="30703" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="286" r_length="250" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E363311" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29961" e_stop="29996"/>
          <exon e_start="30454" e_stop="30703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTCCGAACCCTCAAGCTTACAACTCCTAGCTGTAAGTATTCTCTATTCATATTCAATGACATAACTCATATACTTATGTGTCTAGTTCAACAAGCAAAGATTTTGAGCTGTGGTGACAGAGTCTTCTAAAATGTTTGATGTTAGATAATTGAAACTAATATTCTGATTAGCGCCAGTGGCCTCCCATTTTTGCAGCCATTTCATTTTCTCTTTTCAGTTTCATTTTCTTAAAGCTTATCTTAATCAAACTTCATGAAATGTGTTTCATCAACTGTATAGTTATTAAAACTTTTCCTCAATTTTCATTCGTAGTCTAACTTTATATAGTGAATTTTTGCTTAGCTGACCATAACTCATTTGGGATTGAGGGTTGGTTGGTTGTGCTTGCTTAGCAATAAATTAATATGAATATGCTTCATGCTGAGGATCACTTATTCTGCATCTTAGAAAGTTATTCCTTTGCTGATGGTACTTTTATTTTCTAACAGTTGGTGATTTGAATCACTTAATATCTGCAACCATGTCCGGAGTTACTTGTTGTCTCAGATTCCCTGGACAGCTTAACTCTGATCTGAGGAAACTTGCTGTGAATCTCATTCCTTTCCCCCGTCTCCACTTCTTCATGGTTGGGTTTGTTCCACTTACCTCACGTGGTTCACAACAGTACCGCGCTTTATCTGTTCCTGAGCTTACTCAACAAATGTGGGATGCAAAGAACATGATGTGTGCTGCTGACCC</genome_strand>
        <mrna_strand>TTTGTTTCCGAACCCTCAAACTAACAACTCCTAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGATTTGAATCACTTAATATCTGCAACCATGTCCGGAGTTACTTGTTGTCTCAGATTCCCTGGACAGCTTAACTCTGATCTGAGGAAACTTGCTGTGAATCTCATTCCTTTCCCCCGTCTTCACTTCTTCATGGTTGGGTTTGCTCCACTTACCTCACGTGGTTCACAACAGTACCGCGCTTTATCTGTTCCTGAGCTTACTCAACAAATGTGGGATGCAAAGAACATGATGTGTGCTGCTGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374322" ref_strand="+" ref_description="SGN-E374322 [TUS-33-N24](-)">
      <seq>gagcttactcaacaaatgtgggatgcaaagaacatgatgtgtgctgctgaccctaggcatggccgctatttgacagcatcagcaatgtttagggggaaaatgagcaccaaggaagttgatgagcagatgcttaatgtgcagaacaaaaattcttcatacttcgttgagtggattcccaacaacgttaagtcaacagtctgtgatattccaccaactggtctaaagatggcatcgactttcattggaaattcaacctcaatacaagagatgttccgtcgtgtcagtgagcaattcacagccatgtttaggaggaaggctttcttgcattggtacacaggggaaggaatggatgagatggagttcactgaggcagagagcaacatgaatgatctggtctctgagtaccaacagtaccaagatgcagtagcagatgaggatgaaggatacgaggacgaagatgaagcatatcatgactagtatgcttatgccgggaaatcttatcttatattttaagtaatagttcgtttcaactgtgcatgaactttttagtagtgaagagaaagcgactaacctgtatttttgtcgaacttgtcactaccccttaattgcatattgaatatttgttgcttttgctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30351" stop="31592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30651" g_stop="31295" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E374322" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30651" e_stop="31295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTACTCAACAAATGTGGGATGCAAAGAACATGATGTGTGCTGCTGACCCTAGGCATGGCCGCTATTTGACAGCATCAGCAATGTTTAGGGGGAAAATGAGCACCAAGGAAGTTGATGAGCAGATGCTTAATGTGCAGAACAAAAATTCTTCATACTTCGTTGAGTGGATCCCCAACAACGTTAAGTCAACAGTCTGTGATATTCCACCAACTGGTCTAAAGATGGCATCGACTTTCATTGGAAATTCAACCTCAATACAAGAGATGTTCCGTCGTGTCAGTGAGCAATTCACAGCCATGTTTAGGAGGAAGGCTTTCTTGCATTGGTACACAGGGGAAGGAATGGATGAGATGGAGTTCACTGAGGCAGAGAGCAACATGAATGATCTGGTCTCTGAGTACCAACAGTACCAAGATGCAGTAGCAGATGAGGATGAAGGATACGAGGACGAAGATGAAGCATATCATGACTAGTATGCTTATGCCGGGAAATCTTATCTTATATTTTAAAAGTAATAGTTCGTTTCAACTGTGCATGAACTTTTTAGTAGTGAAGAGAAAGCGACTAACCTGTATTTTTGTCGAACTTGTCACTACCCCTTAATTGCATATTGAATATTTGTTGCTTTTGCTAAGCAATCT</genome_strand>
        <mrna_strand>GAGCTTACTCAACAAATGTGGGATGCAAAGAACATGATGTGTGCTGCTGACCCTAGGCATGGCCGCTATTTGACAGCATCAGCAATGTTTAGGGGGAAAATGAGCACCAAGGAAGTTGATGAGCAGATGCTTAATGTGCAGAACAAAAATTCTTCATACTTCGTTGAGTGGATTCCCAACAACGTTAAGTCAACAGTCTGTGATATTCCACCAACTGGTCTAAAGATGGCATCGACTTTCATTGGAAATTCAACCTCAATACAAGAGATGTTCCGTCGTGTCAGTGAGCAATTCACAGCCATGTTTAGGAGGAAGGCTTTCTTGCATTGGTACACAGGGGAAGGAATGGATGAGATGGAGTTCACTGAGGCAGAGAGCAACATGAATGATCTGGTCTCTGAGTACCAACAGTACCAAGATGCAGTAGCAGATGAGGATGAAGGATACGAGGACGAAGATGAAGCATATCATGACTAGTATGCTTATGCCGGGAAATCTTATCTTATATTTT--AAGTAATAGTTCGTTTCAACTGTGCATGAACTTTTTAGTAGTGAAGAGAAAGCGACTAACCTGTATTTTTGTCGAACTTGTCACTACCCCTTAATTGCATATTGAATATTTGTTGCTTTTGCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362815" ref_strand="-" ref_description="SGN-E362815 [cLPP-2-K16]">
      <seq>agcttactcaacaaatgtgggatgcaaagaacatgatgtgtgctgctgaccctaggcatggccgctatttgacagcatcagcaatgtttagggggaaaatgagcaccaaggaagttgatgagcagatgcttaatgtgcagaacaaaaattcttcatacttcgttgagtggattcccaacaacgttaagtcaacagtctgtgatattccaccaactggtctaaagatggcatcgactttcattggaaattcaacctcaatacaagagatgttccgtcgtgtcagtgagcaattcacagccatgtttaggaggaaggctttcttgcattggtacacaggggaaggaatggatgagatggagttcactgaggcagagagcaacatgaatgatctggtctctgagtaccaacagtaccaagatgcagtagcagatgaggatgaaggatacgaggacgaagatgaagcatatcatgactagtatgcttatgccgggaaatcttatcttatattttaagtaatagttcgtttcaactgtgcatgaactttttagtagtgaagagaaagcgactaacctgtatttttgtcgaacttgtcactaccccttaattgcatattgaatatttgttgcttttgctaaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30352" stop="44364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30652" g_stop="31295" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31296" i_stop="31360" i_length="65">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.761" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31361" g_stop="31379" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="662" r_length="20" r_score="0.526"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E362815" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362815" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="30652" e_stop="31295"/>
          <exon e_start="31361" e_stop="31379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTACTCAACAAATGTGGGATGCAAAGAACATGATGTGTGCTGCTGACCCTAGGCATGGCCGCTATTTGACAGCATCAGCAATGTTTAGGGGGAAAATGAGCACCAAGGAAGTTGATGAGCAGATGCTTAATGTGCAGAACAAAAATTCTTCATACTTCGTTGAGTGGATCCCCAACAACGTTAAGTCAACAGTCTGTGATATTCCACCAACTGGTCTAAAGATGGCATCGACTTTCATTGGAAATTCAACCTCAATACAAGAGATGTTCCGTCGTGTCAGTGAGCAATTCACAGCCATGTTTAGGAGGAAGGCTTTCTTGCATTGGTACACAGGGGAAGGAATGGATGAGATGGAGTTCACTGAGGCAGAGAGCAACATGAATGATCTGGTCTCTGAGTACCAACAGTACCAAGATGCAGTAGCAGATGAGGATGAAGGATACGAGGACGAAGATGAAGCATATCATGACTAGTATGCTTATGCCGGGAAATCTTATCTTATATTTTAAAAGTAATAGTTCGTTTCAACTGTGCATGAACTTTTTAGTAGTGAAGAGAAAGCGACTAACCTGTATTTTTGTCGAACTTGTCACTACCCCTTAATTGCATATTGAATATTTGTTGCTTTTGCTAAGCAATCTGTGATTGAGTAATGATAAAACATGCTGTAGTTGGTATATACTCATACTACTTACATTATGTCCAGTAAAATGAACCT-GTGCTTA</genome_strand>
        <mrna_strand>AGCTTACTCAACAAATGTGGGATGCAAAGAACATGATGTGTGCTGCTGACCCTAGGCATGGCCGCTATTTGACAGCATCAGCAATGTTTAGGGGGAAAATGAGCACCAAGGAAGTTGATGAGCAGATGCTTAATGTGCAGAACAAAAATTCTTCATACTTCGTTGAGTGGATTCCCAACAACGTTAAGTCAACAGTCTGTGATATTCCACCAACTGGTCTAAAGATGGCATCGACTTTCATTGGAAATTCAACCTCAATACAAGAGATGTTCCGTCGTGTCAGTGAGCAATTCACAGCCATGTTTAGGAGGAAGGCTTTCTTGCATTGGTACACAGGGGAAGGAATGGATGAGATGGAGTTCACTGAGGCAGAGAGCAACATGAATGATCTGGTCTCTGAGTACCAACAGTACCAAGATGCAGTAGCAGATGAGGATGAAGGATACGAGGACGAAGATGAAGCATATCATGACTAGTATGCTTATGCCGGGAAATCTTATCTTATATTTT--AAGTAATAGTTCGTTTCAACTGTGCATGAACTTTTTAGTAGTGAAGAGAAAGCGACTAACCTGTATTTTTGTCGAACTTGTCACTACCCCTTAATTGCATATTGAATATTTGTTGCTTTTGCTAAAAAAAAA.................................................................AAAAAAAAAACTCGAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374065" ref_strand="-" ref_description="SGN-E374065 [TUS-33-M17]">
      <seq>caaatgtgggatgcaaagaacatgatgtgtgctgctgaccctaggcatggccgctatttgacagcatcagcaatgtttagggggaaaatgagcaccaaggaagttgatgagcagatgcttaatgtgcagaacaaaaattcttcatacttcgttgagtggattcccaacaacgttaagtcaacagtctgtgatattccaccaactggtctaaagatggcatcgactttcattggaaattcaacctcaatacaagagatgttccgtcgtgtcagtgagcaattcacagccatgtttaggaggaaggctttcttgcattggtacacaggggaaggaatggatgagatggagttcactgaggcagagagcaacatgaatgatctggtctctgagtaccaacagtaccaagatgcagtagcagatgaggatgaaggatacgaggacgaagatgaagcatatcatgactagtatgcttatgccgggaaatcttatcttatattttaagtaatagttcgtttcaactgtgcatgaactttttagtagtgaagagaaagcgactaacctgtatttttgtcgaacttgtcactaccccttaattgcatattgaatatttgttgcttttgctaaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30363" stop="44364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30663" g_stop="31295" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31296" i_stop="31360" i_length="65">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.761" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31361" g_stop="31379" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="651" r_length="20" r_score="0.526"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E374065" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374065" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="30663" e_stop="31295"/>
          <exon e_start="31361" e_stop="31379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGTGGGATGCAAAGAACATGATGTGTGCTGCTGACCCTAGGCATGGCCGCTATTTGACAGCATCAGCAATGTTTAGGGGGAAAATGAGCACCAAGGAAGTTGATGAGCAGATGCTTAATGTGCAGAACAAAAATTCTTCATACTTCGTTGAGTGGATCCCCAACAACGTTAAGTCAACAGTCTGTGATATTCCACCAACTGGTCTAAAGATGGCATCGACTTTCATTGGAAATTCAACCTCAATACAAGAGATGTTCCGTCGTGTCAGTGAGCAATTCACAGCCATGTTTAGGAGGAAGGCTTTCTTGCATTGGTACACAGGGGAAGGAATGGATGAGATGGAGTTCACTGAGGCAGAGAGCAACATGAATGATCTGGTCTCTGAGTACCAACAGTACCAAGATGCAGTAGCAGATGAGGATGAAGGATACGAGGACGAAGATGAAGCATATCATGACTAGTATGCTTATGCCGGGAAATCTTATCTTATATTTTAAAAGTAATAGTTCGTTTCAACTGTGCATGAACTTTTTAGTAGTGAAGAGAAAGCGACTAACCTGTATTTTTGTCGAACTTGTCACTACCCCTTAATTGCATATTGAATATTTGTTGCTTTTGCTAAGCAATCTGTGATTGAGTAATGATAAAACATGCTGTAGTTGGTATATACTCATACTACTTACATTATGTCCAGTAAAATGAACCT-GTGCTTA</genome_strand>
        <mrna_strand>CAAATGTGGGATGCAAAGAACATGATGTGTGCTGCTGACCCTAGGCATGGCCGCTATTTGACAGCATCAGCAATGTTTAGGGGGAAAATGAGCACCAAGGAAGTTGATGAGCAGATGCTTAATGTGCAGAACAAAAATTCTTCATACTTCGTTGAGTGGATTCCCAACAACGTTAAGTCAACAGTCTGTGATATTCCACCAACTGGTCTAAAGATGGCATCGACTTTCATTGGAAATTCAACCTCAATACAAGAGATGTTCCGTCGTGTCAGTGAGCAATTCACAGCCATGTTTAGGAGGAAGGCTTTCTTGCATTGGTACACAGGGGAAGGAATGGATGAGATGGAGTTCACTGAGGCAGAGAGCAACATGAATGATCTGGTCTCTGAGTACCAACAGTACCAAGATGCAGTAGCAGATGAGGATGAAGGATACGAGGACGAAGATGAAGCATATCATGACTAGTATGCTTATGCCGGGAAATCTTATCTTATATTTT--AAGTAATAGTTCGTTTCAACTGTGCATGAACTTTTTAGTAGTGAAGAGAAAGCGACTAACCTGTATTTTTGTCGAACTTGTCACTACCCCTTAATTGCATATTGAATATTTGTTGCTTTTGCTAAAAAAAAA.................................................................AAAAAAAAAACTCGAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224028" ref_strand="+" ref_description="SGN-E224028 [cLEL-19-C4](-)">
      <seq>atgtttaggaggaaggctttcttgcattggtacacagggaaaggaatggataagatggagttcactgaggcagagagcaacatgaatgatctggtctctgagtaccaacagtaccaagatgcagtagcagatgaggatgaaggatacgaggacgaagatgaagcatatcatgactagtatgcttatgccgggaaatcttatcttatattttaaaagtaatagttcgtttcaactgtgcatgaactttttagtagtgaagagaaagcgactaacctgtatttttgtcgaacttgtcactaccccttaattgcatattgaatatttgttgcttttgctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30651" stop="44356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30951" g_stop="31295" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31296" i_stop="31360" i_length="65">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.761" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31361" g_stop="31369" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="354" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E224028" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30951" e_stop="31295"/>
          <exon e_start="31361" e_stop="31369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTTAGGAGGAAGGCTTTCTTGCATTGGTACACAGGGGAAGGAATGGATGAGATGGAGTTCACTGAGGCAGAGAGCAACATGAATGATCTGGTCTCTGAGTACCAACAGTACCAAGATGCAGTAGCAGATGAGGATGAAGGATACGAGGACGAAGATGAAGCATATCATGACTAGTATGCTTATGCCGGGAAATCTTATCTTATATTTTAAAAGTAATAGTTCGTTTCAACTGTGCATGAACTTTTTAGTAGTGAAGAGAAAGCGACTAACCTGTATTTTTGTCGAACTTGTCACTACCCCTTAATTGCATATTGAATATTTGTTGCTTTTGCTAAGCAATCTGTGATTGAGTAATGATAAAACATGCTGTAGTTGGTATATACTCATACTACTTACATTATGTCCAGTAAAATGAA</genome_strand>
        <mrna_strand>ATGTTTAGGAGGAAGGCTTTCTTGCATTGGTACACAGGGAAAGGAATGGATAAGATGGAGTTCACTGAGGCAGAGAGCAACATGAATGATCTGGTCTCTGAGTACCAACAGTACCAAGATGCAGTAGCAGATGAGGATGAAGGATACGAGGACGAAGATGAAGCATATCATGACTAGTATGCTTATGCCGGGAAATCTTATCTTATATTTTAAAAGTAATAGTTCGTTTCAACTGTGCATGAACTTTTTAGTAGTGAAGAGAAAGCGACTAACCTGTATTTTTGTCGAACTTGTCACTACCCCTTAATTGCATATTGAATATTTGTTGCTTTTGCTAAAAAAAAA.................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349477" ref_strand="+" ref_description="SGN-E349477 [cTOS-1-C9]">
      <seq>ctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaactttatagtatcagcagttgaagttatcttctttgtcccagaatgctactgttggaatgtatgcctcctgttgcagtaaataatgatacacaataattaaagaagttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41376" stop="39751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41076" g_stop="41008" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40687" g_stop="40482" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="275" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40481" i_stop="40384" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40383" g_stop="40047" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="612" r_length="337" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E349477" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41076" e_stop="41008"/>
          <exon e_start="40687" e_stop="40482"/>
          <exon e_start="40383" e_stop="40047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTTGAAGTTATCTTCTTTGTCCCAGAATGCTACTGTTGGAATGTATGCCTCCTGTTGCAGTAAATAATGATACACAATAATTAAAGAAGTTCAAATATATCTC</genome_strand>
        <mrna_strand>CTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTTGAAGTTATCTTCTTTGTCCCAGAATGCTACTGTTGGAATGTATGCCTCCTGTTGCAGTAAATAATGATACACAATAATTAAAGAAGTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287448" ref_strand="-" ref_description="SGN-E287448 [cLES-9-A17]">
      <seq>acattgtgcactggtggattcaagttctgttgaaagcattgtgtttgtggtgaattcgacctcccaccggattactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgaaaagttctccgactttatagtatcagcagttgaagttatcttctttgtcccagaatgctactgttggaatgtatgcctcctgttgcagtaaataatgatacacaataattaaagaaaaaaaaaaaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40673" stop="39762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40373" g_stop="40048" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E287448" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287448" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="40373" e_stop="40048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTTGAAGTTATCTTCTTTGTCCCAGAATGCTACTGTTGGAATGTATGCCTCCTGTTGCAGTAAATAATGATACACAATAATTAAAGAAGTTCAAATATATCT</genome_strand>
        <mrna_strand>ACATTGTGCACTGGTGGATTCAAGTTCTGTTGAAAGCATTGTGTTTGTGGTGAATTCGACCTCCCACCGGATTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAAAAGTTCTCCGACTTTATAGTATCAGCAGTTGAAGTTATCTTCTTTGTCCCAGAATGCTACTGTTGGAATGTATGCCTCCTGTTGCAGTAAATAATGATACACAATAATTAAAGAAAAAAAAAAAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357363" ref_strand="+" ref_description="SGN-E357363 [cTOS-23-F5]">
      <seq>tcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaactttatagtatcagcagttgaagttatcttctttgtcccagaatgctactgttggaatgtatgcctcctgttgcagtaaataatgatacacaataattaaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40809" stop="39762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40509" g_stop="40482" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40481" i_stop="40384" i_length="98">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40383" g_stop="40054" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="358" r_length="330" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E357363" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40509" e_stop="40482"/>
          <exon e_start="40383" e_stop="40054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTTGAAGTTATCTTCTTTGTCCCAGAATGCTACTGTTGGAATGTATGCCTCCTGTTGCAGTAAATAATGATACACAATAATTAAAGAAGTTCAAAT</genome_strand>
        <mrna_strand>TCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTTGAAGTTATCTTCTTTGTCCCAGAATGCTACTGTTGGAATGTATGCCTCCTGTTGCAGTAAATAATGATACACAATAATTAAAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250179" ref_strand="-" ref_description="SGN-E250179 [cLEG-11-F11]">
      <seq>atttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagttttccnccttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaactttatagtatcagcagttgaagttatcttctttgtcccagaatgctactgttggaatgtatgcctcctcctgcagtaaataatgatacccaataattaaagaagttcaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41344" stop="39751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41044" g_stop="41008" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40687" g_stop="40482" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="243" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40481" i_stop="40384" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40383" g_stop="40056" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="570" r_length="327" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="571" polyA_stop="590"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E250179" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250179" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41044" e_stop="41008"/>
          <exon e_start="40687" e_stop="40482"/>
          <exon e_start="40383" e_stop="40056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTTGAAGTTATCTTCTTTGTCCCAGAATGCTACTGTTGGAATGTATGCCTCCTGTTGCAGTAAATAATGATACACAATAATTAAAGAAGTTCAA</genome_strand>
        <mrna_strand>ATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAG-TTTTCCNCCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTTGAAGTTATCTTCTTTGTCCCAGAATGCTACTGTTGGAATGTATGCCTCCTCCTGCAGTAAATAATGATACCCAATAATTAAAGAAGTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539990" ref_strand="+" ref_description="SGN-E539990 [TUS-60-A15](-)">
      <seq>cataataatcaagaaagaatgtgtagaattagaatcgggtttttagtataaaaatcagaaagaacggggtggacattttatctttgatgttatggatttcgttgttagagagatttttagtagaaaacatctgtaaagtgtatcaaaaaagaaggtttgtatggcttaaacacgattagcagttgtaatgcacaggacatgtatttgttgtcatttcctctcacctgcttcctcatttacaggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggtttggttctcttccttaaagcatcaattgtgatatctgccattattggttctttgtgctacagtaattgtaatttatattgatctcctcttattcaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaactttatagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41229" stop="39856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40929" g_stop="40146" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="784" r_length="784" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E539990" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40929" e_stop="40146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTTG</genome_strand>
        <mrna_strand>CATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555031" ref_strand="+" ref_description="SGN-E555031 [cTSC-6-D14]">
      <seq>caagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaactttatagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41383" stop="39856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41083" g_stop="41008" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40687" g_stop="40482" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="282" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40481" i_stop="40384" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40383" g_stop="40147" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="519" r_length="237" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E555031" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41083" e_stop="41008"/>
          <exon e_start="40687" e_stop="40482"/>
          <exon e_start="40383" e_stop="40147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTT</genome_strand>
        <mrna_strand>CAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314484" ref_strand="+" ref_description="SGN-E314484 [cTOB-1-A9]">
      <seq>gttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaactttatagtatcagcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41746" stop="39848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41446" g_stop="41398" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41120" g_stop="41008" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="162" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40687" g_stop="40482" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="368" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40481" i_stop="40384" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40383" g_stop="40148" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="604" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E314484" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41446" e_stop="41398"/>
          <exon e_start="41120" e_stop="41008"/>
          <exon e_start="40687" e_stop="40482"/>
          <exon e_start="40383" e_stop="40148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGT</genome_strand>
        <mrna_strand>GTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246249" ref_strand="-" ref_description="SGN-E246249 [cLEF-40-M5]">
      <seq>gagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaacttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41785" stop="39859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41485" g_stop="41398" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41120" g_stop="41008" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="201" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40687" g_stop="40482" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="407" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40481" i_stop="40384" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40383" g_stop="40154" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="637" r_length="230" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E246249" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246249" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41485" e_stop="41398"/>
          <exon e_start="41120" e_stop="41008"/>
          <exon e_start="40687" e_stop="40482"/>
          <exon e_start="40383" e_stop="40154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATC</genome_strand>
        <mrna_strand>GAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227495" ref_strand="+" ref_description="SGN-E227495 [cLEL-30-M1](-)">
      <seq>gtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaactttatagtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41349" stop="39856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41049" g_stop="41008" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40687" g_stop="40482" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="248" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40481" i_stop="40384" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40383" g_stop="40157" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="475" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="476" polyA_stop="494"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E227495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41049" e_stop="41008"/>
          <exon e_start="40687" e_stop="40482"/>
          <exon e_start="40383" e_stop="40157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGT</genome_strand>
        <mrna_strand>GTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221794" ref_strand="+" ref_description="SGN-E221794 [cLEL-10-L4](-)">
      <seq>tgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgccctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaactttatagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41326" stop="39856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41026" g_stop="41008" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40687" g_stop="40482" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="226" r_length="207" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40481" i_stop="40384" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40383" g_stop="40157" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="453" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="454" polyA_stop="470"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E221794" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41026" e_stop="41008"/>
          <exon e_start="40687" e_stop="40482"/>
          <exon e_start="40383" e_stop="40157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCG-CCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGT</genome_strand>
        <mrna_strand>TGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221708" ref_strand="+" ref_description="SGN-E221708 [cLEL-10-L4](-)">
      <seq>atgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaactttatagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40974" stop="39856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40674" g_stop="40482" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40481" i_stop="40384" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40383" g_stop="40157" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="420" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="421" polyA_stop="437"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E221708" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40674" e_stop="40482"/>
          <exon e_start="40383" e_stop="40157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGT</genome_strand>
        <mrna_strand>ATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229203" ref_strand="+" ref_description="SGN-E229203 [cLEL-29-P3](-)">
      <seq>aaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaactaaatagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40876" stop="39856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40576" g_stop="40482" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40481" i_stop="40384" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40383" g_stop="40157" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="322" r_length="227" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="323" polyA_stop="339"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E229203" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40576" e_stop="40482"/>
          <exon e_start="40383" e_stop="40157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGT</genome_strand>
        <mrna_strand>AAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTAAATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543832" ref_strand="+" ref_description="SGN-E543832 [TUS-65-N16](-)">
      <seq>gctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42176" stop="39866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41876" g_stop="41856" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="141" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="259" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41120" g_stop="41008" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="372" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40687" g_stop="40482" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="578" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40481" i_stop="40384" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40383" g_stop="40158" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="804" r_length="226" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E543832" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41876" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41008"/>
          <exon e_start="40687" e_stop="40482"/>
          <exon e_start="40383" e_stop="40158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAG</genome_strand>
        <mrna_strand>GCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548944" ref_strand="+" ref_description="SGN-E548944 [TUS-65-N20](-)">
      <seq>ttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaaatgtgctgttagagttctatgccccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaatctctccttaggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41754" stop="39868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41454" g_stop="41398" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41120" g_stop="41008" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="171" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40687" g_stop="40482" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="377" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40481" i_stop="40384" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40383" g_stop="40159" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="602" r_length="225" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E548944" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41454" e_stop="41398"/>
          <exon e_start="41120" e_stop="41008"/>
          <exon e_start="40687" e_stop="40482"/>
          <exon e_start="40383" e_stop="40159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGG-AAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATA</genome_strand>
        <mrna_strand>TTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCCCCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAATCTCTCCTTAGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228723" ref_strand="+" ref_description="SGN-E228723 [cLEL-29-P3](-)">
      <seq>ttcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaactttatcccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40858" stop="39860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40558" g_stop="40482" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40481" i_stop="40384" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40383" g_stop="40159" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="302" r_length="225" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="305" polyA_stop="321"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E228723" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40558" e_stop="40482"/>
          <exon e_start="40383" e_stop="40159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATA</genome_strand>
        <mrna_strand>TTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354288" ref_strand="+" ref_description="SGN-E354288 [cTOS-16-B22]">
      <seq>ttgttagagagatttttagtagaaaacatctgtaaagtgtatcaaaaaagaaggtttgtatggcttaaacacgattagcagttgtaatgcacaggacatgtatttgttgtcatttcctctcacctgcttcctcatttacaggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggtttggttctcttccttaaagcatcaattgtgatatctgccattattggttctttgtgctacagtaattgtaatttatattgatctcctcttattcaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41128" stop="39862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40828" g_stop="40162" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E354288" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40828" e_stop="40162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTT</genome_strand>
        <mrna_strand>TTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551806" ref_strand="+" ref_description="SGN-E551806 [cTSB-1-O16]">
      <seq>caaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaaaaanaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42001" stop="39866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41702" g_stop="41641" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="180" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41120" g_stop="41008" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="293" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40687" g_stop="40482" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="499" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40481" i_stop="40384" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40383" g_stop="40166" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="717" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="718" polyA_stop="744"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E551806" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41702" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41008"/>
          <exon e_start="40687" e_stop="40482"/>
          <exon e_start="40383" e_stop="40166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAA</genome_strand>
        <mrna_strand>CAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553391" ref_strand="+" ref_description="SGN-E553391 [cTSB-5-M20]">
      <seq>caaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42003" stop="39869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41703" g_stop="41641" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="181" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41120" g_stop="41008" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="294" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40687" g_stop="40482" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="500" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40481" i_stop="40384" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40383" g_stop="40169" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="715" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E553391" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41703" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41008"/>
          <exon e_start="40687" e_stop="40482"/>
          <exon e_start="40383" e_stop="40169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTC</genome_strand>
        <mrna_strand>CAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E556457" ref_strand="+" ref_description="SGN-E556457 [cTSD-3-I3]">
      <seq>aaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattgtatctattgagaagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42001" stop="39869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41701" g_stop="41641" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="179" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41120" g_stop="41008" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="292" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40687" g_stop="40482" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="498" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40481" i_stop="40384" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40383" g_stop="40169" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="713" r_length="215" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E556457" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41701" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41008"/>
          <exon e_start="40687" e_stop="40482"/>
          <exon e_start="40383" e_stop="40169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTC</genome_strand>
        <mrna_strand>AAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTGTATCTATTGAGAAGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552339" ref_strand="+" ref_description="SGN-E552339 [cTSB-3-J23]">
      <seq>ggatcccccgggctgcaggacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42012" stop="39870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41723" g_stop="41641" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.855"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="201" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41120" g_stop="41008" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="314" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40687" g_stop="40482" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="520" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40481" i_stop="40384" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40383" g_stop="40170" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="734" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E552339" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41723" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41008"/>
          <exon e_start="40687" e_stop="40482"/>
          <exon e_start="40383" e_stop="40170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCT</genome_strand>
        <mrna_strand>GGATCCCCCGGGCTGCAGGACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356569" ref_strand="+" ref_description="SGN-E356569 [cTOS-21-K20]">
      <seq>ttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41742" stop="39870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41442" g_stop="41398" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41120" g_stop="41008" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="158" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40687" g_stop="40482" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="364" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40481" i_stop="40384" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40383" g_stop="40170" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="578" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E356569" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41442" e_stop="41398"/>
          <exon e_start="41120" e_stop="41008"/>
          <exon e_start="40687" e_stop="40482"/>
          <exon e_start="40383" e_stop="40170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCT</genome_strand>
        <mrna_strand>TTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288638" ref_strand="-" ref_description="SGN-E288638 [cLES-8-B19]">
      <seq>ctggctccaattttggataaagtggctgtatcatttgaaagcgatccttatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccacaggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41376" stop="39875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41076" g_stop="41008" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40687" g_stop="40482" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="275" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40481" i_stop="40384" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40383" g_stop="40175" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="484" r_length="209" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="501"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E288638" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288638" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41076" e_stop="41008"/>
          <exon e_start="40687" e_stop="40482"/>
          <exon e_start="40383" e_stop="40175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAA</genome_strand>
        <mrna_strand>CTGGCTCCAATTTTGGATAAAGTGGCTGTATCATTTGAAAGCGATCCTTATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACAGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344174" ref_strand="+" ref_description="SGN-E344174 [cTOF-16-D5]">
      <seq>aaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42002" stop="39879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41702" g_stop="41641" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="180" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41120" g_stop="41008" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="293" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40687" g_stop="40482" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="499" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40481" i_stop="40384" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40383" g_stop="40179" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="704" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E344174" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41702" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41008"/>
          <exon e_start="40687" e_stop="40482"/>
          <exon e_start="40383" e_stop="40179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTG</genome_strand>
        <mrna_strand>AAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705421" ref_strand="+" ref_description="SGN-E705421 [FA27AD09]">
      <seq>gtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgctttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttatttgaaggattacaaggaaggaaaattgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatccggatgttctcattgcaaaactagacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtgacaagcctgctcagtcagactctgccaaagttgattcagcaaaggatgaactttagaggactctaggaacattgtgtactgatggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42278" stop="39880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41978" g_stop="41856" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="243" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="361" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41120" g_stop="41008" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="474" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40687" g_stop="40482" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="680" r_length="206" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40481" i_stop="40384" i_length="98">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.846" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40383" g_stop="40180" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="884" r_length="204" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E705421" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41978" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41008"/>
          <exon e_start="40687" e_stop="40482"/>
          <exon e_start="40383" e_stop="40180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATT</genome_strand>
        <mrna_strand>GTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGCTTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTATTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAATTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCGGATGTTCTCATTGCAAAACTA................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGACAAGCCTGCTCAGTCAGACTCTGCCAAAGTTGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGATGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279446" ref_strand="+" ref_description="SGN-E279446 [cLER-11-H14]">
      <seq>catgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttncgttgtagtttttggagcttttcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41985" stop="39954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41685" g_stop="41641" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="163" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41120" g_stop="41008" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="276" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40687" g_stop="40482" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="482" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40481" i_stop="40384" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40383" g_stop="40254" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="612" r_length="130" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E279446" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41685" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41008"/>
          <exon e_start="40687" e_stop="40482"/>
          <exon e_start="40383" e_stop="40254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGC</genome_strand>
        <mrna_strand>CATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTNCGTTGTAGTTTTTGGAGCTTTTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244435" ref_strand="+" ref_description="SGN-E244435 [cLEF-3-C24]">
      <seq>gctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagaggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgtaaatgatctcccaaaaggtgactttgatgatcagggattccctactatgtacttcagatccgcctctggtaacttgtcacaggacaatggtgagagaacaaatgaggctatcatcgaattcatcgagaagaatcgtggctagcctgctcagtcagactctgccaaagtggattcagcaaaggatgaactttagaggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42012" stop="40181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41712" g_stop="41641" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="190" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41120" g_stop="41008" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="303" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40687" g_stop="40482" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="509" r_length="206" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E244435" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41712" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41008"/>
          <exon e_start="40687" e_stop="40482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG</genome_strand>
        <mrna_strand>GCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGAGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGTAAATGATCTCCCAAAAGGTGACTTTGATGATCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGGACAATGGTGAGAGAACAAATGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCTAGCCTGCTCAGTCAGACTCTGCCAAAGTGGATTCAGCAAAGGATGAACTTTAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211166" ref_strand="+" ref_description="SGN-E211166 [cLEC-70-I4]">
      <seq>gatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaaacaaagaagctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42185" stop="40187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41885" g_stop="41856" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="150" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="268" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41120" g_stop="41008" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="381" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40687" g_stop="40487" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="582" r_length="201" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E211166" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41885" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41008"/>
          <exon e_start="40687" e_stop="40487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTT</genome_strand>
        <mrna_strand>GATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAAACAAAGAAGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709846" ref_strand="+" ref_description="SGN-E709846 [FA53BG04]">
      <seq>ccgttaactatttttgacaatgacccaaacaaccatccttatcttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgctttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttatttgaaggattacaaggaaggaaaattgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatccggatgttctcattgcaaaactagacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtgacaagccctgctcaatcaaactctgccaaagttgattcagcaaaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42556" stop="40192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42261" g_stop="42185" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="210" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="330" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="448" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41120" g_stop="41008" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="561" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40687" g_stop="40492" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="758" r_length="197" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E709846" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42261" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41008"/>
          <exon e_start="40687" e_stop="40492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAG-CCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATG</genome_strand>
        <mrna_strand>CCG-T-TAACTATTTTTGACAATGACCCAAACAACCATCCTTATCTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGCTTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTATTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAATTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCGGATGTTCTCATTGCAAAACTA................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGACAAGCCCTGCTCAATCAAACTCTGCCAAAGTTGATTCAGCAAAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273849" ref_strand="+" ref_description="SGN-E273849 [cLEN-7-K15]">
      <seq>ctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42175" stop="40222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41875" g_stop="41856" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="140" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="258" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41120" g_stop="41008" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="371" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40687" g_stop="40522" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="537" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E273849" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41875" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41008"/>
          <exon e_start="40687" e_stop="40522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAG</genome_strand>
        <mrna_strand>CTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351306" ref_strand="+" ref_description="SGN-E351306 [cTOS-6-L10]">
      <seq>acaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatggtcagggattccctactatgtacttcagaaccccctctggtaacttgtcccagtaccatggtgaaaaaaccaaaaaaggtatcctccaattcatccaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41715" stop="40245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41415" g_stop="41398" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41120" g_stop="41008" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="131" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40687" g_stop="40546" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="273" r_length="142" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E351306" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41415" e_stop="41398"/>
          <exon e_start="41120" e_stop="41008"/>
          <exon e_start="40687" e_stop="40546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGA</genome_strand>
        <mrna_strand>ACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGGTCAGGGATTCCCTACTATGTACTTCAGAACCCCCTCTGGTAACTTGTCCCAGTACCATGGTGAAAAAACCAAAAAAGGTATCCTCCAATTCATCCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273841" ref_strand="+" ref_description="SGN-E273841 [cLEN-7-G15]">
      <seq>ctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42175" stop="40276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41875" g_stop="41856" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="140" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="258" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41120" g_stop="41008" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="371" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40687" g_stop="40576" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="483" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E273841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41875" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41008"/>
          <exon e_start="40687" e_stop="40576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAA</genome_strand>
        <mrna_strand>CTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208077" ref_strand="+" ref_description="SGN-E208077 [cLEC-34-H17]">
      <seq>acaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactntgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42238" stop="40281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41938" g_stop="41856" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="203" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="321" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41120" g_stop="41008" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="434" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40687" g_stop="40581" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="541" r_length="107" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E208077" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41938" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41008"/>
          <exon e_start="40687" e_stop="40581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAG</genome_strand>
        <mrna_strand>ACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTNTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326919" ref_strand="+" ref_description="SGN-E326919 [cTOC-18-O2]">
      <seq>ctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcnaaactggacgcaacccgcaatgatctcccgaaaggtgactttgatgttcaggnattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42198" stop="40287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41898" g_stop="41856" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="163" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="281" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41120" g_stop="41008" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="394" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40687" g_stop="40587" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="495" r_length="101" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E326919" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41898" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41008"/>
          <exon e_start="40687" e_stop="40587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGG</genome_strand>
        <mrna_strand>CTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCNAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCCGCAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGNATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250966" ref_strand="+" ref_description="SGN-E250966 [cLEG-13-N1]">
      <seq>ttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42191" stop="40307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41891" g_stop="41856" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="156" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="274" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41120" g_stop="41008" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="387" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41007" i_stop="40688" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40687" g_stop="40607" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="468" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E250966" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41891" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41008"/>
          <exon e_start="40687" e_stop="40607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGT</genome_strand>
        <mrna_strand>TTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539993" ref_strand="+" ref_description="SGN-E539993 [TUS-60-A15]">
      <seq>tttggaattgcagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggtgatgcatcctcttctttttcttggatatattttggaatgaaagcgttgttaattgtgaacaatattctgcacggaaggaaaggcttactaacctttttcctctaattttccacattgttacaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatggtgcgtgtctgtcaatattttaatctttattcgatgtcttggttaagaaagagttgtttctttgttgtaccatttcgttctccctctttggtgtttacttgcatttctttactagtgtgtaaggtcgtgatgaggagttggatgtcgtaaattaactgattgtggaactattatatgtagtaggagaaagagggagcagtcatcagctaattgcccgcgggtttgactttaacaatagttgtgctctcctaaattattattctttttgtctgctcagtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggtaagaacttttttcataaactaaacatggatatttgatgcatgtatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42073" stop="40658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41773" g_stop="40958" g_length="816"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="816" r_length="816" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E539993" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41773" e_stop="40958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTA</genome_strand>
        <mrna_strand>TTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATATGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267069" ref_strand="+" ref_description="SGN-E267069 [cLEI-4-G10]">
      <seq>gcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttcttattgcaaaactggacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42254" stop="40703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41954" g_stop="41856" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="219" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="337" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41120" g_stop="41008" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="450" r_length="113" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E267069" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41954" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG</genome_strand>
        <mrna_strand>GCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTTATTGCAAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264284" ref_strand="+" ref_description="SGN-E264284 [cLEG-70-E1]">
      <seq>gggtgagttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42189" stop="40738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41889" g_stop="41856" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="153" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="271" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41120" g_stop="41038" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="354" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E264284" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41889" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAA</genome_strand>
        <mrna_strand>GGGTGA-GTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262877" ref_strand="+" ref_description="SGN-E262877 [cLEG-59-M16]">
      <seq>tttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccnnattttggatgaagtggctgtatcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42911" stop="40740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42715" g_stop="42710" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42426" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="192" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="318" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="453" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="573" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="692" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41120" g_stop="41040" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="774" r_length="82" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E262877" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42715" e_stop="42710"/>
          <exon e_start="42611" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTT-AAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCC-AATTTTGGATGAAGTGGCTGTATCATTTG</genome_strand>
        <mrna_strand>TTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCNNATTTTGGATGAAGTGGCTGTATCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253878" ref_strand="+" ref_description="SGN-E253878 [cLEG-28-P6]">
      <seq>tcatcataatggacgctcatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaagatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42026" stop="40765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41726" g_stop="41641" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="204" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41120" g_stop="41065" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="260" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E253878" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>260</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41726" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATT</genome_strand>
        <mrna_strand>TCATCATAATGGACGCTCATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAAGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319042" ref_strand="+" ref_description="SGN-E319042 [cTOB-14-H1]">
      <seq>tgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42605" stop="40793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42305" g_stop="42185" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="256" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="376" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="494" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41120" g_stop="41093" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="522" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E319042" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42305" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTG</genome_strand>
        <mrna_strand>TGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701835" ref_strand="+" ref_description="SGN-E701835 [FA17AC10]">
      <seq>caactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaagtggttgttagggatcccctccangatatggtttacaaatcggggaaaaatgtgctgttagagttctatgcaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43179" stop="40796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42879" g_stop="42710" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42426" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="356" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="482" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="617" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="737" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="855" r_length="118" r_score="0.966"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="0.94"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41120" g_stop="41096" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="856" r_stop="880" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E701835" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42879" e_stop="42710"/>
          <exon e_start="42611" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTG</genome_strand>
        <mrna_strand>CAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAAGTGGTTGTTAGGGATCCCCTCCANGATATGGTTTACAAATCGGGGAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215005" ref_strand="+" ref_description="SGN-E215005 [cLEC-78-E3]">
      <seq>aattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42880" stop="40796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42580" g_stop="42426" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="281" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="416" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="536" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="654" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41120" g_stop="41096" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="679" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E215005" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42580" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTG</genome_strand>
        <mrna_strand>AATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287726" ref_strand="+" ref_description="SGN-E287726 [cLES-9-H4]">
      <seq>aaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42533" stop="40799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42233" g_stop="42185" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="184" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="304" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="422" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41120" g_stop="41099" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="444" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E287726" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42233" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACC</genome_strand>
        <mrna_strand>AAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269568" ref_strand="+" ref_description="SGN-E269568 [cLEM-2-E22]">
      <seq>tcgatgctatggagaagttcatctcagaatctagtattgctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42600" stop="40801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42300" g_stop="42185" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="251" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="371" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="489" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41120" g_stop="41101" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="509" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E269568" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42300" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCA</genome_strand>
        <mrna_strand>TCGATGCTATGGAGAAGTTCATCTCAGAATCTAGTATTGCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTCTATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256293" ref_strand="+" ref_description="SGN-E256293 [cLEG-37-N16]">
      <seq>cgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42767" stop="41090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42467" g_stop="42426" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="168" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="303" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="423" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="541" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41397" i_stop="41121" i_length="277">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41120" g_stop="41107" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="555" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E256293" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42467" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
          <exon e_start="41120" e_stop="41107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTC</genome_strand>
        <mrna_strand>CGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG.....................................................................................................................................................................................................................................................................................TGCTGTTAGAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288667" ref_strand="+" ref_description="SGN-E288667 [cLES-8-J20]">
      <seq>ttggaattgcagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggtgatgcatcctcttctttttcttggatatattttggaatgaaagcgttgttaattgtgaacaatattctgcacggaaggaaaggcttactaacctttttcctctaattttccacattgttacaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatggtgcgtgtctgtcaatattttaatctttattcgatgtcttggttaagaaagagtttgttctttgttgtaccatttcgttctccctctttggtgtttacttgcatttctttactagtgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42072" stop="40978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41772" g_stop="41278" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E288667" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41772" e_stop="41278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGT</genome_strand>
        <mrna_strand>TTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTTGTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247634" ref_strand="+" ref_description="SGN-E247634 [cLEF-42-L12]">
      <seq>tcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaatgaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42066" stop="41094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41871" g_stop="41856" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="136" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41515" g_stop="41398" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="254" r_length="118" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E247634" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41871" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG</genome_strand>
        <mrna_strand>TCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAATGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213242" ref_strand="+" ref_description="SGN-E213242 [cLEC-72-J4]">
      <seq>tagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggttttacaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42859" stop="41108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42559" g_stop="42426" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="260" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="395" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="515" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41515" g_stop="41408" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="623" r_length="108" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E213242" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42559" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCG</genome_strand>
        <mrna_strand>TAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTTACAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261477" ref_strand="+" ref_description="SGN-E261477 [cLEG-57-A11]">
      <seq>tttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42911" stop="41154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42715" g_stop="42710" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42426" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="192" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="318" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="453" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="573" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41515" g_stop="41454" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="635" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E261477" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42715" e_stop="42710"/>
          <exon e_start="42611" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGT</genome_strand>
        <mrna_strand>TTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323281" ref_strand="+" ref_description="SGN-E323281 [cTOB-28-B6]">
      <seq>aagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaaagtcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43086" stop="41163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42786" g_stop="42710" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42426" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="263" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="389" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="524" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="644" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41515" g_stop="41463" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="697" r_length="53" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E323281" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42786" e_stop="42710"/>
          <exon e_start="42611" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGA</genome_strand>
        <mrna_strand>AAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAAGTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710420" ref_strand="+" ref_description="SGN-E710420 [FA55BE04]">
      <seq>gtcttaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtccatgaccgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43054" stop="41159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42758" g_stop="42710" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42426" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="236" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="362" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="497" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="617" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41515" g_stop="41463" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="670" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E710420" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42758" e_stop="42710"/>
          <exon e_start="42611" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTC-GAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGA</genome_strand>
        <mrna_strand>GTCTTAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310371" ref_strand="+" ref_description="SGN-E310371 [cTOA-1-O14]">
      <seq>aatggagaagttcatctcacaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42593" stop="41163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42293" g_stop="42185" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="244" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="364" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41515" g_stop="41463" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="417" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E310371" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42293" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGA</genome_strand>
        <mrna_strand>AATGGAGAAGTTCATCTCACAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206447" ref_strand="+" ref_description="SGN-E206447 [cLEC-23-O7]">
      <seq>tagctgaaaaactgcgaggcgagttcgattttgctcacagtgctgatgctgaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattatgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatatgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaagattacaaggaaggaaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42859" stop="41340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42559" g_stop="42426" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="260" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="395" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41760" g_stop="41641" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="515" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41640" i_stop="41516" i_length="125">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41515" g_stop="41504" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="527" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E206447" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42559" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41641"/>
          <exon e_start="41515" e_stop="41504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTG</genome_strand>
        <mrna_strand>TAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACAGTGCTGATGCTGAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTATGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATATGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAAGATTACAAG.............................................................................................................................GAAGGAAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320450" ref_strand="+" ref_description="SGN-E320450 [cTOB-22-N23]">
      <seq>ctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactggtgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgagaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgcgaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacgaaggggatggggtgagctttctcttgagtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacacgcacctgtgatcatcataatggacgctgatgaacaaaagtatattaacgaccgtgtggagcctgatgccattgctgcttacttgaaggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43068" stop="41346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42768" g_stop="42710" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42426" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="245" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="371" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="506" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.858" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41760" g_stop="41645" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="622" r_length="116" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E320450" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42768" e_stop="42710"/>
          <exon e_start="42611" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTA</genome_strand>
        <mrna_strand>CTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGGTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGAGAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCGAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACGAAGGGGATGGGGTGAGCTTTCTCTTGAGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACACGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAACGACCGTGTGGAGCCTGATGCCATTGCTGCTTACTTGAAGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211099" ref_strand="+" ref_description="SGN-E211099 [cLEC-69-N17]">
      <seq>tcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43142" stop="41354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42842" g_stop="42710" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42426" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="319" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="445" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="580" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41760" g_stop="41653" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="688" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E211099" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42842" e_stop="42710"/>
          <exon e_start="42611" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTG</genome_strand>
        <mrna_strand>TCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253672" ref_strand="+" ref_description="SGN-E253672 [cLEG-32-F3]">
      <seq>tttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgctgttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42911" stop="41353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42715" g_stop="42710" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42426" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="192" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="318" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="453" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41760" g_stop="41653" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="561" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E253672" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42715" e_stop="42710"/>
          <exon e_start="42611" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTG</genome_strand>
        <mrna_strand>TTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTGTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323627" ref_strand="+" ref_description="SGN-E323627 [cTOC-2-L2]">
      <seq>tttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42867" stop="41353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42567" g_stop="42426" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="268" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="403" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41760" g_stop="41653" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="511" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E323627" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42567" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTG</genome_strand>
        <mrna_strand>TTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335066" ref_strand="+" ref_description="SGN-E335066 [cTOE-9-F12]">
      <seq>aactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttcaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43212" stop="41354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42912" g_stop="42710" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42426" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="389" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="515" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="649" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41760" g_stop="41654" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="756" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E335066" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42912" e_stop="42710"/>
          <exon e_start="42611" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTT</genome_strand>
        <mrna_strand>AACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTT-CAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316738" ref_strand="+" ref_description="SGN-E316738 [cTOB-5-H16]">
      <seq>acaaaccttattgatgagaaaagtatctttgttggtggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgacgctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43042" stop="41361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42742" g_stop="42710" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42426" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="219" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="345" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="480" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41760" g_stop="41661" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="580" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E316738" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42742" e_stop="42710"/>
          <exon e_start="42611" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTG</genome_strand>
        <mrna_strand>ACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GGTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGACGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253799" ref_strand="+" ref_description="SGN-E253799 [cLEG-28-C12]">
      <seq>aaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43147" stop="41370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42847" g_stop="42710" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42426" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="324" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="450" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="585" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41760" g_stop="41670" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="676" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E253799" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42847" e_stop="42710"/>
          <exon e_start="42611" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATG</genome_strand>
        <mrna_strand>AAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209252" ref_strand="+" ref_description="SGN-E209252 [cLEC-53-C16]">
      <seq>gaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaatgaccatgtggaacctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42882" stop="41370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42582" g_stop="42426" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="283" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="418" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41760" g_stop="41670" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="509" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E209252" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42582" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATG</genome_strand>
        <mrna_strand>GAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAATGACCATGTGGAACCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203808" ref_strand="+" ref_description="SGN-E203808 [cLEC-17-H6]">
      <seq>tatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42904" stop="41396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42604" g_stop="42426" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="305" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="440" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41760" g_stop="41696" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="505" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E203808" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42604" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTA</genome_strand>
        <mrna_strand>TATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704362" ref_strand="+" ref_description="SGN-E704362 [FA24AD01]">
      <seq>cgatcgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaaacagcacctgtgatcatcataatggacgctgatgaacaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43452" stop="41398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43151" g_stop="43121" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="122" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43120" i_stop="42998" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42997" g_stop="42710" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="410" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42611" g_stop="42426" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="596" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="722" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="857" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41760" g_stop="41698" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="858" r_stop="920" r_length="63" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E704362" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43151" e_stop="43121"/>
          <exon e_start="42997" e_stop="42710"/>
          <exon e_start="42611" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAG</genome_strand>
        <mrna_strand>GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAAACAGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214809" ref_strand="+" ref_description="SGN-E214809 [cLEC-79-D6]">
      <seq>tctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcngactgaagccggaacaggcacctgtgatcatcataatggacgctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43072" stop="41405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42772" g_stop="42710" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42426" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="249" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="375" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="510" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41760" g_stop="41705" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="566" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E214809" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42772" e_stop="42710"/>
          <exon e_start="42611" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGA</genome_strand>
        <mrna_strand>TCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCNGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306540" ref_strand="+" ref_description="SGN-E306540 [cLEX-13-L17]">
      <seq>aaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaagtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43147" stop="41406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42847" g_stop="42710" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42426" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="324" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="450" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="585" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41760" g_stop="41706" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="640" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E306540" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42847" e_stop="42710"/>
          <exon e_start="42611" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATG</genome_strand>
        <mrna_strand>AAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAAGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316587" ref_strand="+" ref_description="SGN-E316587 [cTOA-25-F4]">
      <seq>acaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43042" stop="41408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42742" g_stop="42710" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42426" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="219" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="345" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41990" g_stop="41856" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="480" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41855" i_stop="41761" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41760" g_stop="41708" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="533" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E316587" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42742" e_stop="42710"/>
          <exon e_start="42611" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41856"/>
          <exon e_start="41760" e_stop="41708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGA</genome_strand>
        <mrna_strand>ACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324735" ref_strand="+" ref_description="SGN-E324735 [cTOC-8-H4]">
      <seq>aactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaagggatggggtgagctttctcttgggtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43178" stop="41582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42878" g_stop="42710" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42426" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="355" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="481" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41990" g_stop="41882" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="590" r_length="109" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E324735" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42878" e_stop="42710"/>
          <exon e_start="42611" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATG</genome_strand>
        <mrna_strand>AACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAAGGGATGGGGTGAGCTTTCTCTTGGGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262546" ref_strand="+" ref_description="SGN-E262546 [cLEG-63-A22]">
      <seq>agacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggaaaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggaatggggtgagctttctcttgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42897" stop="41586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42597" g_stop="42426" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="298" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41990" g_stop="41886" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="404" r_length="106" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E262546" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42597" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGG-ATGGGGTGAGCTTTCTCTTGGGT</genome_strand>
        <mrna_strand>AGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAAAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGAATGGGGTGAGCTTTCTCTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257121" ref_strand="+" ref_description="SGN-E257121 [cLEG-46-A21]">
      <seq>atgttaaattatgtttctttccagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaaagtccaagtacacgatgttgctgtgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43321" stop="41619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43021" g_stop="42710" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42426" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="498" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="624" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41990" g_stop="41919" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="696" r_length="72" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E257121" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43021" e_stop="42710"/>
          <exon e_start="42611" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTT-AAGTCCAAGTACAACGATGTTGCTGTGATT</genome_strand>
        <mrna_strand>ATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAAGTCCAAGTAC-ACGATGTTGCTGTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324653" ref_strand="+" ref_description="SGN-E324653 [cTOC-9-D19]">
      <seq>gaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtctatgcaatggagaagttcatctcataatctagtattcctgttgttactatttttgacaatgacccaaacaaccattcttatgttaacaagttcttcgaaagcaccaacgccaaagcattgctatttgtgaactttagctctgaatttgatgcttttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43025" stop="41646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42725" g_stop="42710" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42426" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="202" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="328" r_length="126" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41990" g_stop="41946" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="373" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E324653" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42725" e_stop="42710"/>
          <exon e_start="42611" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAG</genome_strand>
        <mrna_strand>GAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCTATGCAATGGAGAAGTTCATCTCATAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATTCTTATGTTAACAAGTTCTTCGAAAGCACCAACGCCAAA..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200816" ref_strand="+" ref_description="SGN-E200816 [cLEC-9-L19]">
      <seq>tgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43031" stop="41647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42731" g_stop="42710" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42426" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="208" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="334" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41990" g_stop="41947" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="378" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E200816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42731" e_stop="42710"/>
          <exon e_start="42611" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAA</genome_strand>
        <mrna_strand>TGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214854" ref_strand="+" ref_description="SGN-E214854 [cLEC-78-M15]">
      <seq>aagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgcccaggcattgctatttgtgaactttagctctgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43438" stop="41659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43138" g_stop="43121" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43120" i_stop="42998" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42997" g_stop="42710" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="306" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42611" g_stop="42426" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="492" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42310" g_stop="42185" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="618" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42184" i_stop="41991" i_length="194">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41990" g_stop="41959" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="650" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E214854" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43138" e_stop="43121"/>
          <exon e_start="42997" e_stop="42710"/>
          <exon e_start="42611" e_stop="42426"/>
          <exon e_start="42310" e_stop="42185"/>
          <exon e_start="41990" e_stop="41959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATT</genome_strand>
        <mrna_strand>AAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCCAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259308" ref_strand="+" ref_description="SGN-E259308 [cLEG-43-G3]">
      <seq>ttaatgttaaattatgtttctttccagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43324" stop="41903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43024" g_stop="42710" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42426" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="501" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42310" g_stop="42203" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="609" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E259308" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43024" e_stop="42710"/>
          <exon e_start="42611" e_stop="42426"/>
          <exon e_start="42310" e_stop="42203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTC</genome_strand>
        <mrna_strand>TTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321129" ref_strand="+" ref_description="SGN-E321129 [cTOB-13-K12]">
      <seq>gacactgtaagagtcttgctcctgagtgtgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatcgagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatgctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgcctcacaccttattgatgagaaaagtatgtttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattgtgctcacactgttgatgctaaacacctccctcggggtggaccagtcagcaagcccactcttcgtcttctaaagccatgtgatgaactctttgttgattttgaggactttgatgtcgatgcaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43446" stop="41989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43146" g_stop="43121" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43120" i_stop="42998" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42997" g_stop="42710" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="314" r_length="288" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42611" g_stop="42426" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="500" r_length="186" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42310" g_stop="42289" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="522" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E321129" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43146" e_stop="43121"/>
          <exon e_start="42997" e_stop="42710"/>
          <exon e_start="42611" e_stop="42426"/>
          <exon e_start="42310" e_stop="42289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGG</genome_strand>
        <mrna_strand>GACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TGTGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATCGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATGCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCTCACACCTTATTGATGAGAAAAGTATGTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTGTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAGCAAGCCCACTCTTCGTCTTCTAAAGCCATGTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253683" ref_strand="+" ref_description="SGN-E253683 [cLEG-32-J5]">
      <seq>ttaatgttaaattatgtttctttccagtatgaataatctgcctaagagctgagtagtcatgaccctacaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttgaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtgctgcatctgctgaaatcaagtcgaaggaagatgccacagaccttattgatgagaaaagtatcgaagttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaataactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctgagatgattttgaggactttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43324" stop="42121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43024" g_stop="42710" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42426" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="501" r_length="186" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42425" i_stop="42311" i_length="115">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42310" g_stop="42302" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="510" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E253683" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43024" e_stop="42710"/>
          <exon e_start="42611" e_stop="42426"/>
          <exon e_start="42310" e_stop="42302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGAT</genome_strand>
        <mrna_strand>TTAATGTTAAATTATGTTTCTTTCCAGTATGAATAATCTGCCTAAGAGCTGAGTAGTCATGACCCTACAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTGAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTGCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAGACCTTATTGATGAGAAAAGTATCGAAGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAATAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTGAGATGATTTTGAG...................................................................................................................GACTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204202" ref_strand="+" ref_description="SGN-E204202 [cLEC-13-K20]">
      <seq>gaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43025" stop="42125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42725" g_stop="42710" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42426" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="202" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E204202" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>202</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42725" e_stop="42710"/>
          <exon e_start="42611" e_stop="42426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG</genome_strand>
        <mrna_strand>GAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294729" ref_strand="-" ref_description="SGN-E294729 [cLET-17-I15](-)">
      <seq>aaaaagctgtctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcggaggaagatgccacaaaccttattgatgagaaaagcatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgccttctaaagccatttgatgaactctttgttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43293" stop="42130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42993" g_stop="42710" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42430" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="466" r_length="182" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E294729" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294729" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42993" e_stop="42710"/>
          <exon e_start="42611" e_stop="42430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTT</genome_strand>
        <mrna_strand>AAAAAGCTGTCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGGAGGAAGATGCCACAAACCTTATTGATGAGAAAAGCATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGCCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294728" ref_strand="+" ref_description="SGN-E294728 [cLET-17-I15]">
      <seq>aaaaagctgtctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcggaggaagatgccacaaaccttattgatgagaaaagcatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgccttctaaagccatttgatgaactctttgttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43293" stop="42130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42993" g_stop="42710" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42430" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="466" r_length="182" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E294728" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42993" e_stop="42710"/>
          <exon e_start="42611" e_stop="42430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTT</genome_strand>
        <mrna_strand>AAAAAGCTGTCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGGAGGAAGATGCCACAAACCTTATTGATGAGAAAAGCATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGCCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311885" ref_strand="+" ref_description="SGN-E311885 [cTOA-15-P6]">
      <seq>aaaaagctgcctcagagctgagtaggcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattatgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43293" stop="42132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42993" g_stop="42710" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42432" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="464" r_length="180" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E311885" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42993" e_stop="42710"/>
          <exon e_start="42611" e_stop="42432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGAT</genome_strand>
        <mrna_strand>AAAAAGCTGCCTCAGAGCTGAGTAGGCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTATGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317628" ref_strand="+" ref_description="SGN-E317628 [cTOB-8-I20]">
      <seq>aatagagatctttcaaaacagtacgagatccaaggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactattacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacatgtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttatggatgagaaaagtatcttcggtgttggtatagttccagacccctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43219" stop="42404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42919" g_stop="42710" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98">
            <donor d_prob="0.907" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42611" g_stop="42588" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="234" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E317628" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42919" e_stop="42710"/>
          <exon e_start="42611" e_stop="42588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCC</genome_strand>
        <mrna_strand>AATAGAGATCTTTCAAAACAGTACGAGATCCAAGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATTACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACATGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATGGATGAGAAAAGTATCTTCGGT..................................................................................................GTTGGTATAGTTCCAGACCCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263442" ref_strand="+" ref_description="SGN-E263442 [cLEG-69-H14]">
      <seq>atgttaaattatgtttctttccagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcntgaagcanctggtattgtatcctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43321" stop="42496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43021" g_stop="42796" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E263442" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43021" e_stop="42796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACT</genome_strand>
        <mrna_strand>ATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCNTGAAGCANCTGGTATTGTATCCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320376" ref_strand="+" ref_description="SGN-E320376 [cTOB-22-E4]">
      <seq>ggaaagataattggtggtggtccaagggcaggaaattgaggtgggaaccgatagttcaagctcaagaaattggggttttgttattgcaattggggattgtgatgtttgttatgagattactaagacccggtttgccattacccgggtcggatcctagagctccgacaatgtttgtaactgttccatatagtgagtttttgagtaagataaatagtaatcaggtgcagaaagttgaggttgatggtgtacatataatgttcaaattgaagagtgaagtgagtagtagtgtaatagagactgaggttgtgaatgtgaatgaaaatggaaatagtaagttgcaagattctgaggcagtgataaggagtgtaactcctacaaagaaaattgtgtatactaccacgaggccgagtgatataaagaccccttatgagaaaatgcttgagaatgatgttgagtttggttctcccgataaacggtctggtggattcatgaactctgcactgataacattattttatattgctgtactagcggggcttcttcatcgcttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46057" stop="49947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46357" g_stop="46859" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46860" i_stop="49597" i_length="2738">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49598" g_stop="49647" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="553" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E320376" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46357" e_stop="46859"/>
          <exon e_start="49598" e_stop="49647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGATAATTGGTGGTGGTCCAAGGGCAGGAAATTGAGGTGGGAACCGATAGTTCAAGCTCAAGAAATTGGGGTTTTGTTATTGCAATTGGGGATTGTGATGTTTGTTATGAGATTACTAAGACCCGGTTTGCCATTACCCGGGTCGGATCCTAGAGCTCCGACAATGTTTGTAACTGTTCCATATAGTGAGTTTTTGAGTAAGATAAATAGTAATCAGGTGCAGAAAGTTGAGGTTGATGGTGTACATATAATGTTCAAATTGAAGAGTGAAGTGAGTAGTAGTGTAATAGAGACTGAGGTTGTGAATGTGAATGAAAATGGAAATAGTAAGTTGCAAGATTCTGAGGCAGTGATAAGGAGTGTAACTCCTACAAAGAAAATTGTGTATACTACCACGAGGCCGAGTGATATAAAGACCCCTTATGAGAAAATGCTTGAGAATGATGTTGAGTTTGGTTCTCCCGATAAACGGTCTGGTGGATTCATGAACTCTGCACTGGTAAGGTTTTGATGAACTACTTTTCAAGTGTATATTGTTGTTATGAAATGTTAAGTCGTGTATCTACACCGATGCACGTTCACTTGCTATATCTGTATCTGTAAATGTTTTTAGTCTTCCTAAAGAGGCTGTAATACCAGTAGCTACACATTCAGTTAGCTTGAAAATGGACTGGTAATTAGATATGAGATATCTGATGCTTCGTCAAAAACTATCGTTACAAATGCTTTAGTTCATTCTTCAACTTTTTATATATGCGCTTAATTGTAACTTCACTGCTTCTGATATTGTACATCTCGAGTTCCCACAAATGGAGAAGTTATAACTAGATCAACTTAATTATATAGTTGTTCTAGGAAAATGTTGTCTTTCTTCTTATGGTCATGTAATTACTCTCTTTTCTCAGCACATGACATGTAGCGGTTGTTTGGTTAGAAGCAAATTATGCAAGGATTAGTTGTAAGGATTTACTAATGCAGGATTTAGTAATAAATGGATTATTTACTATTGAATTAGTATTTGTTGTATTAAAAATTATTATACAGTGTATATTTCAAAATATATTTTTACTTGTTTAAACAAAATTAAATATTGGTTACTATTATCAATGGTTATTTTTGTCATCTAGTGGTTTTACTACATGTATTACTAATCCTCAAGTTCTTATTCCACATTCTATCCCCCATAAAATAATACATATATCCTTGCATAACTTATGCGGGTATTAGCTTAGCGGAAAAGGAAATTGGAGCCAAACACTGTATTGAGAAATGCTAAGCTTTATGTGGAAAGAGTAAATGAAACCGAACATTGTAGTAAGTGTTGAATTTTATGTGGAGATTATGAATAAGGGTTTAGAATGTAATCGTATTTTACAAGTTATAAATAAGGATTTTGAATTTAACCATACATCCCTGCATAACTTATGCGGGTATTTGTTAAGTGGAAAAGATAATTGGAGCCAAACATCATTTTGAACAATGCTAAGTTTTATGTGGAAAGAGTAAATGAAACCGAACATTGTAGTAATAGTGTTGAATTGTATGTGGAGATTATAAATAAGGATTTAGAATGTGATCGTATTTTACAACTTATAAACCTCTTTACTTTTTTCTGATGCTGTCTTCATTATTAACTAACATAATATTACAAGTTACATTTCCATCTCACATTGTAGTTCAAATTCAATGCTGTGTATTCAAAATGCATTCGTTGGCTGACAAAGACTATGTAAATTACTAGGAGCACACTTGTTTATACTATCCAGTGACAATATTGTGTAAATTAATGAAACTAGCAAGGGAGTGAACTAAATGTTTGAAAATAAAGAAGTATTCTAAAGAGGATGGGTTGTAGGATAACTAGAATTAAGAATAGAACAATGCACTGTGAGTGCTAGCATAAAAAGACCGAAATTGAGGTAAGAGCAGGTATTATTGTGGTTCTTAAATTCAGATAATTCACATATTTAGGCTCAATATTTAGGGCAACGATATGATATAACACACAAAGTTAAAATGGAATGGTTGAAATGGAGGATGTGACAAGAGTGTCATACAATAGGAGGAACCTACCAAAGCGAATGGCAAGTTTTATATAATGGTCGTAAGACTAGGAGTGAGTTTTCTTCTAAGAATAAAAATTATCAACAAGATGATTGTTGTAGTAATGAGACTGTTAAGATATATGTGTGATCATAAAAAATAGATATTCCTTCTCAAAAAAATTTAAAATAGATAAGATAGGAAATGATCACGTCTTATATCACGTACAGATAATACACATATGAGCGTAAAATGAGAAAATGTTTTTGAGATGACTTGTTCATGTTCTACAAAGGTCTCCAAATGCTTTAGTAGTTGGTGTGAAACAAATTATTTTTGAAATTTCCAGAAAGGACGAGATAAACCTCAAATCGCATGTAACACAGTTGGTTTAAAAATCATGATAAGGCTCAGTTATATTAATGTGCTTACATCAGATTCAGTATTATGCTAGGAATCTTTATTCTGTTAAGAGATTTGTATGTCAGTTGAATATGTAGAAGACCTCTAATTTAAGCCAACTCCAAGTTATTGAGTATTGTTAATGATATGGGTCCAAAGTGGAGCAGCATGTATATTGATGATTCATATAGACGACCCCAATTGGTTGTGATTGAGTCATACTTCTTATTTGTTGTTTAAAGTATTTTAAGGGAGCAAACAACCACAACAACAAACCCATGGAACAAACAACACCATCAAACAAAAATATTTCAGAGTTGAGTTCAGTCATAAGTTCCTCTCCGAGGTGCTTTCTTAGCTTAAGATGTCTTGTGTTTCACAAAAACAAAGATGACTAGATTTTCTGTTGATTCCAAGCTAGCTTATTCTCTTAATTTGCTATAGGAATTCTACTTGTCACTCTTATGGAATAAACTTCCTTTTAAGTGTGAATACTACTCCTTTCCGCCCTTTTCTGAGGCAACCTTTGACATGCCATTCTGGAGTGTGAGATCAATTTTCATGTTCTTTTCTTGCTCAAGTGCAGAGATTGCATGAACCCGAGTTGGTTGCAGTGAGTTTTTCTATATTTTTGGCTAATGCAACTTGACATTTCTTTCTAGTGCCCCATTCATGTTATTCATCTGTTCTATGGTGTAAGCTAAACATTTCATTATTGTTTGTCTATCCTGATTTTTTTTCTTCAGATGTTTGAATTAAAAATTTGAAGTGCTATTTTACATTATTTTGCAGATAGCATTATTTTATATTGCTGTACTAGCGGGGCTTCTTCATCGCTTCCC</genome_strand>
        <mrna_strand>GGAAAGATAATTGGTGGTGGTCCAAGGGCAGGAAATTGAGGTGGGAACCGATAGTTCAAGCTCAAGAAATTGGGGTTTTGTTATTGCAATTGGGGATTGTGATGTTTGTTATGAGATTACTAAGACCCGGTTTGCCATTACCCGGGTCGGATCCTAGAGCTCCGACAATGTTTGTAACTGTTCCATATAGTGAGTTTTTGAGTAAGATAAATAGTAATCAGGTGCAGAAAGTTGAGGTTGATGGTGTACATATAATGTTCAAATTGAAGAGTGAAGTGAGTAGTAGTGTAATAGAGACTGAGGTTGTGAATGTGAATGAAAATGGAAATAGTAAGTTGCAAGATTCTGAGGCAGTGATAAGGAGTGTAACTCCTACAAAGAAAATTGTGTATACTACCACGAGGCCGAGTGATATAAAGACCCCTTATGAGAAAATGCTTGAGAATGATGTTGAGTTTGGTTCTCCCGATAAACGGTCTGGTGGATTCATGAACTCTGCACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACATTATTTTATATTGCTGTACTAGCGGGGCTTCTTCATCGCTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706507" ref_strand="+" ref_description="SGN-E706507 [FA30AF06]">
      <seq>tactagcggggcttcttcatcgcttcccagtgaatttttctcagagcacagctggccaactcagaaatcgcaagtcagggggttcaggtggcacaaaagtgtctgaactaggggaaactatcacatttgctgatgttgcaggcgttgacgaggctaaggaggagctagaagaaattgtggaatttcttagaaatccagataagtatgtacggcttggtgcacgtcctcctcgtggtgttctactggttggtctccccgggacaggaaagacacttctagcaaaggctgttgctggggaagctgaggttccttttatcagttgttctgcaagtgagtttgtagaattgtatgtaggaatgggagcatcacgcgtccgtgacctgtttgcacgggcaaagaaggaggcaccttcaataatttttatcgatgagatagatgctgtggcaaaaagccgtgatggaaaattccgcattgtaagcaatgatgaaagagagcagacattgaaccaactactcactgagatggacggatttgacagtaattctgctgtaattgttcttggagcaacaaatcgctctgatgtcttagaccctgctcttcgccgacctgggagatttgaccgtgttgtaatggtggaagcgcctgataggtgtggaagagaagctatcttaaaggtacatgtctccaagaaagaacttcccttggcacaagatgttgatcttggtaacatcgcttctatgactactggttttacgggggcagatcttgcaaatctggtgaatgaagctgctctgttggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49320" stop="51754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49620" g_stop="49663" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49664" i_stop="49760" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.697" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49761" g_stop="49895" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="179" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49896" i_stop="50028" i_length="133">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50029" g_stop="50094" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="245" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50095" i_stop="50433" i_length="339">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50434" g_stop="50619" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="431" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50620" i_stop="50773" i_length="154">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50774" g_stop="50860" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="518" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50861" i_stop="50937" i_length="77">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50938" g_stop="51051" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="632" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51052" i_stop="51196" i_length="145">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51197" g_stop="51321" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="757" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="51322" i_stop="51411" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="51412" g_stop="51454" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="800" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E706507" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49620" e_stop="49663"/>
          <exon e_start="49761" e_stop="49895"/>
          <exon e_start="50029" e_stop="50094"/>
          <exon e_start="50434" e_stop="50619"/>
          <exon e_start="50774" e_stop="50860"/>
          <exon e_start="50938" e_stop="51051"/>
          <exon e_start="51197" e_stop="51321"/>
          <exon e_start="51412" e_stop="51454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTAGCGGGGCTTCTTCATCGCTTCCCAGTGAATTTTTCTCAGGTACATACAATTATTATTCAAAATATGTGTGTGATTATTGTATGTCCGTGATATTTCTGAATAACTCACCAACTTCATTGTGGCTGCTTAATAACAGAGCACAGCTGGCCAACTCAGAAATCGCAAGTCAGGGGGTTCAGGTGGCACAAAAGTGTCTGAACTAGGGGAAACTATCACATTTGCTGATGTTGCAGGCGTTGACGAGGCTAAGGAGGAGCTAGAAGAAATTGTGGTATTTTTTATTTTCATTGGTGAACGTTTCTTAACAACATATCTGCTATAAGTGCTGCATTTTGATACCATAAGAAGTTGATGAACAGTTAATAATTCATTGTTGTGGTGTTTTTAATTGCTTTTTTCCCCAGGAATTTCTTAGAAATCCAGATAAGTATGTACGGCTTGGTGCACGTCCTCCTCGTGGTGTTCTACTGGTGAGTTTCAAATTTGACGTAGTAATGTGAATGCTAGGTGGTTATCAAAGTGAGAAAGCTTTGAGAATAATGTACAATAATTGGAGGGTTCGAATAGTAACTCATTGAAACTTCTGATCTTTTGTTCTTGGTTTTTTTCCTGTTTCTGAAGGGATTCTCTCTCTATCCCTTCATGTCACTTTGTGATGCCTCTATGGTCAAATCACATCATTATTTCCTGCTAGTTTTGTTATGCGACTATTGACTGTCAGACCATTCTACTTGGGGACACCATTTGATTAGTTTTATGCTTTGTGATTCTCAATGTTTAGATTATAAAAATGGCTTTAATTGTTACAGGTTGGTCTCCCCGGGACAGGAAAGACACTTCTAGCAAAGGCTGTTGCTGGGGAAGCTGAGGTTCCTTTTATCAGTTGTTCTGCAAGTGAGTTTGTAGAATTGTATGTAGGAATGGGAGCATCACGCGTCCGTGACCTGTTTGCACGGGCAAAGAAGGAGGCACCTTCAATAATTTTTATCGATGAGGTCACCTGTGCTTTCCTCCTCTTCTTCTTCCTCTACAAACTCAAAATATTCCAATAAAAAGTGTCATCATCATCTGGATGTGCAGACCTCCTCTTCTTTCTCTACAAACTCAAAATATTCTAAAAAAAAGTGTCATCATTTTCTGGATGTGCAGATAGATGCTGTGGCAAAAAGCCGTGATGGAAAATTCCGCATTGTAAGCAATGATGAAAGAGAGCAGACATTGAACCAACTACTCACTGTAAGACATACTGGTTTTGTGGTGCTGCATCACTTCAGTTTTTTCATAAGAAACTAATATCTTACAATAATCTGCAGGAGATGGACGGATTTGACAGTAATTCTGCTGTAATTGTTCTTGGAGCAACAAATCGCTCTGATGTCTTAGACCCTGCTCTTCGCCGACCTGGGAGATTTGACCGTGTTGTAATGGTTTGTATCTTTCTTCAATGGGAATAAAGTTTTCATTTTGCTTAAAAGCTTTTGACCATGTTTTAGAACATGGTCATGAGTCATGACCTCATCATACAGACAACTCCTATAGAATGGAAATGGTGATGTAAGTTCCTGTTTCTAGGTGGAAGCGCCTGATAGGTGTGGAAGAGAAGCTATCTTAAAGGTACATGTCTCCAAGAAAGAACTTCCCTTGGCACAAGATGTTGATCTTGGTAACATCGCTTCTATGACTACTGGTTTTACGGGGTAAACCTTGTTCTCTGACTTTTCATAAGCTTTAAATGTTATATGTGATGTTTCTATGGCTGACTGATTATTCATTTGAGGATGGTATAGGGCAGATCTTGCAAATCTGGTGAATGAAGCTGCTCTGTTGGCA</genome_strand>
        <mrna_strand>TACTAGCGGGGCTTCTTCATCGCTTCCCAGTGAATTTTTCTCAG.................................................................................................AGCACAGCTGGCCAACTCAGAAATCGCAAGTCAGGGGGTTCAGGTGGCACAAAAGTGTCTGAACTAGGGGAAACTATCACATTTGCTGATGTTGCAGGCGTTGACGAGGCTAAGGAGGAGCTAGAAGAAATTGTG.....................................................................................................................................GAATTTCTTAGAAATCCAGATAAGTATGTACGGCTTGGTGCACGTCCTCCTCGTGGTGTTCTACTG...................................................................................................................................................................................................................................................................................................................................................GTTGGTCTCCCCGGGACAGGAAAGACACTTCTAGCAAAGGCTGTTGCTGGGGAAGCTGAGGTTCCTTTTATCAGTTGTTCTGCAAGTGAGTTTGTAGAATTGTATGTAGGAATGGGAGCATCACGCGTCCGTGACCTGTTTGCACGGGCAAAGAAGGAGGCACCTTCAATAATTTTTATCGATGAG..........................................................................................................................................................ATAGATGCTGTGGCAAAAAGCCGTGATGGAAAATTCCGCATTGTAAGCAATGATGAAAGAGAGCAGACATTGAACCAACTACTCACT.............................................................................GAGATGGACGGATTTGACAGTAATTCTGCTGTAATTGTTCTTGGAGCAACAAATCGCTCTGATGTCTTAGACCCTGCTCTTCGCCGACCTGGGAGATTTGACCGTGTTGTAATG.................................................................................................................................................GTGGAAGCGCCTGATAGGTGTGGAAGAGAAGCTATCTTAAAGGTACATGTCTCCAAGAAAGAACTTCCCTTGGCACAAGATGTTGATCTTGGTAACATCGCTTCTATGACTACTGGTTTTACGGG..........................................................................................GGCAGATCTTGCAAATCTGGTGAATGAAGCTGCTCTGTTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330721" ref_strand="+" ref_description="SGN-E330721 [cTOD-8-M12]">
      <seq>acaaaagtgtctgaactaggggaaactatcacatttgctgatgttgcaggcgttgacgaggctaaggaggagctagaagaaattgtggaatttcttagaaatccagataagtatgtacggcttggtgcacgtcctcctcgtggtgttctactggttggtctccccgggacaggaaagacacttctagcaaaggctgttgctggggaagctgaggttccttttatcagttgttctgcaagtgagtttgtagaattgtatgtaggaatgggagcatcacgcgtccgtgacctgtttgcacgggcaaagaaggaggcaccttcaataatttttatcgatgagatagatgctgtggcaaaaagccgtgatggaaaattccgcattgtaagcaatgatgaaagagagcagacattgaaccaactactcactgagatggacggatttgacagtaattctgctgtaattgttcttggaacaacaaatcgctctgatgtcttagaccctgctcttcgccgacctgggagatttgaccgtgttgtaatggtggaagcgcctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49509" stop="51511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49809" g_stop="49895" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49896" i_stop="50028" i_length="133">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50029" g_stop="50094" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="153" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50095" i_stop="50433" i_length="339">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50434" g_stop="50619" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="339" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50620" i_stop="50773" i_length="154">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50774" g_stop="50860" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="426" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50861" i_stop="50937" i_length="77">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50938" g_stop="51051" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="540" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51052" i_stop="51196" i_length="145">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51197" g_stop="51211" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="555" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E330721" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49809" e_stop="49895"/>
          <exon e_start="50029" e_stop="50094"/>
          <exon e_start="50434" e_stop="50619"/>
          <exon e_start="50774" e_stop="50860"/>
          <exon e_start="50938" e_stop="51051"/>
          <exon e_start="51197" e_stop="51211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAGTGTCTGAACTAGGGGAAACTATCACATTTGCTGATGTTGCAGGCGTTGACGAGGCTAAGGAGGAGCTAGAAGAAATTGTGGTATTTTTTATTTTCATTGGTGAACGTTTCTTAACAACATATCTGCTATAAGTGCTGCATTTTGATACCATAAGAAGTTGATGAACAGTTAATAATTCATTGTTGTGGTGTTTTTAATTGCTTTTTTCCCCAGGAATTTCTTAGAAATCCAGATAAGTATGTACGGCTTGGTGCACGTCCTCCTCGTGGTGTTCTACTGGTGAGTTTCAAATTTGACGTAGTAATGTGAATGCTAGGTGGTTATCAAAGTGAGAAAGCTTTGAGAATAATGTACAATAATTGGAGGGTTCGAATAGTAACTCATTGAAACTTCTGATCTTTTGTTCTTGGTTTTTTTCCTGTTTCTGAAGGGATTCTCTCTCTATCCCTTCATGTCACTTTGTGATGCCTCTATGGTCAAATCACATCATTATTTCCTGCTAGTTTTGTTATGCGACTATTGACTGTCAGACCATTCTACTTGGGGACACCATTTGATTAGTTTTATGCTTTGTGATTCTCAATGTTTAGATTATAAAAATGGCTTTAATTGTTACAGGTTGGTCTCCCCGGGACAGGAAAGACACTTCTAGCAAAGGCTGTTGCTGGGGAAGCTGAGGTTCCTTTTATCAGTTGTTCTGCAAGTGAGTTTGTAGAATTGTATGTAGGAATGGGAGCATCACGCGTCCGTGACCTGTTTGCACGGGCAAAGAAGGAGGCACCTTCAATAATTTTTATCGATGAGGTCACCTGTGCTTTCCTCCTCTTCTTCTTCCTCTACAAACTCAAAATATTCCAATAAAAAGTGTCATCATCATCTGGATGTGCAGACCTCCTCTTCTTTCTCTACAAACTCAAAATATTCTAAAAAAAAGTGTCATCATTTTCTGGATGTGCAGATAGATGCTGTGGCAAAAAGCCGTGATGGAAAATTCCGCATTGTAAGCAATGATGAAAGAGAGCAGACATTGAACCAACTACTCACTGTAAGACATACTGGTTTTGTGGTGCTGCATCACTTCAGTTTTTTCATAAGAAACTAATATCTTACAATAATCTGCAGGAGATGGACGGATTTGACAGTAATTCTGCTGTAATTGTTCTTGGAGCAACAAATCGCTCTGATGTCTTAGACCCTGCTCTTCGCCGACCTGGGAGATTTGACCGTGTTGTAATGGTTTGTATCTTTCTTCAATGGGAATAAAGTTTTCATTTTGCTTAAAAGCTTTTGACCATGTTTTAGAACATGGTCATGAGTCATGACCTCATCATACAGACAACTCCTATAGAATGGAAATGGTGATGTAAGTTCCTGTTTCTAGGTGGAAGCGCCTGAT</genome_strand>
        <mrna_strand>ACAAAAGTGTCTGAACTAGGGGAAACTATCACATTTGCTGATGTTGCAGGCGTTGACGAGGCTAAGGAGGAGCTAGAAGAAATTGTG.....................................................................................................................................GAATTTCTTAGAAATCCAGATAAGTATGTACGGCTTGGTGCACGTCCTCCTCGTGGTGTTCTACTG...................................................................................................................................................................................................................................................................................................................................................GTTGGTCTCCCCGGGACAGGAAAGACACTTCTAGCAAAGGCTGTTGCTGGGGAAGCTGAGGTTCCTTTTATCAGTTGTTCTGCAAGTGAGTTTGTAGAATTGTATGTAGGAATGGGAGCATCACGCGTCCGTGACCTGTTTGCACGGGCAAAGAAGGAGGCACCTTCAATAATTTTTATCGATGAG..........................................................................................................................................................ATAGATGCTGTGGCAAAAAGCCGTGATGGAAAATTCCGCATTGTAAGCAATGATGAAAGAGAGCAGACATTGAACCAACTACTCACT.............................................................................GAGATGGACGGATTTGACAGTAATTCTGCTGTAATTGTTCTTGGAACAACAAATCGCTCTGATGTCTTAGACCCTGCTCTTCGCCGACCTGGGAGATTTGACCGTGTTGTAATG.................................................................................................................................................GTGGAAGCGCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204814" ref_strand="+" ref_description="SGN-E204814 [cLEC-14-G16]">
      <seq>atgaagcagggcacgcagtagttgggactgctgttgcaaatcttctttccgggcagccacgggttgagaagctgagcatattgccaagatctggaggggctttaggatttacttatattcctccaaccaatgaggacagatatctgctctttgttgatgaattgcgtgggaggttggtcactcttcttggtggacgtgctgcggaagaagtattgtactctggacgtgtatctactggtgctcttgatgatatacgcagagctacagacatggcctacaaggcagtggctgaatatggtcttagtcagaccattggccctatctcagtggcaacactttctggaggtgggatggatgatggtggatccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52140" stop="54427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52440" g_stop="52507" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52508" i_stop="53824" i_length="1317">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53825" g_stop="54127" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="371" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E204814" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52440" e_stop="52507"/>
          <exon e_start="53825" e_stop="54127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGCAGGGCACGCAGTAGTTGGGACTGCTGTTGCAAATCTTCTTTCCGGGCAGCCACGGGTTGAGGTGATCATTATTATCACTTTCTCTGAGAAATTCTTGTTCTTCCTGATTTACTGCAAGTTCGTGTTATTTGATTTGTGTTCCACTGGATAACATCTGACATCTAAAAAGAATTGATATGATAGAACTACTCTAGAAATAGAATTTCTTAAGTTTGTCATGTTTCAGAACAGGAAAATCAAATGTCTGCATGTCTTGAACAGCCTGGTTTTGACCTTTTCCAGGGACATTATGCATCAACAAAACCACTCCCCTGCATTTGGTATGGGACCTCTAATAGTGTTTAAATTGGGTTCACAGTTTGTTCTTGGGGTGATGGATTATGGAGAAATATTTGGATCATTGATCAATGCAGTCATCTGTGACCTATCCTTCTCAATGTAGTAGCACTGTTATTGAAGCAGAATAAAATAAAATATAAAAAATAGAAAATGGAGAAGTAGTGGCTTATTGGTGTCCTGTTGATTGATAAGAATGTCCAAAATGGAAAAATGCCTGTGTTTGGATCTAATACTTTATTCTAATAAAAAATGGGTGTCTGGATTTGATAAGGAATAGGAAATGACTTGGTTCTGATGTCAGACTTGGGTACAACTCAAATACGCTACTGATTGTTTGACCTTTATTTTCCCTAGAAAGGCAACTCTGGAAGAATGTTATATGTACATAATGACCTCACTTATCAGGAAAAAACAATATAAGGTTCTTTCTCCCTATCTCTCTCTTTTCTGGTGTTCTCCAGATTCATGGAAATATATTTTCTGGGTAAAAGGGTTGTATGCCTTCCTTAATGTTGTTTCTCCTCAACAAAAAAAGAAGAAATAGTATCATAGTTCTATATTTCTGGCTTGAGTAGGTGAGGTATTTTATTCCATGATTTTGGTGTTGGTAAATAGAGAGCGAGCGACTCACTCTCCAACCCCCCAACTTTGTTTTTCTCAATGTGAAAGTTGTTACTAATGAGAAATCTCAAGTGATTTTCCTTGTTATTTCCCCTTCCTCTCTTTCTTAATTTTGACGGCACCAGTTCATTTCTTTTACCTCCCCCAACTATCTGTTTCAAATGAACCATACCAACATGGTTCTGGAAGTGGTCTTCCTGCAAGTTCTCTCAATATCCTGATCCTTTTCATGGGAAAGTTTGCAAGTGAGGTCAGCCATTTCTATATTGGTACAGATGCTTAAAGTCTTTTGCTAAAATCAGTACTTTGCTTCTACTCAACCTTGCTTTTCTCAAACTATGATTGTTGCTTTTGTTGTACATAATTGGGATTAGTGCAGTTATGGTATTAATAACAGTTCTCTTTTTTCGCTAACCAGAAGCTGAGCATATTGCCAAGATCTGGAGGGGCTTTAGGATTTACTTATATTCCTCCAACCAATGAGGACAGATATCTGCTCTTTGTTGATGAATTGCGTGGGAGGTTGGTCACTCTTCTTGGTGGACGTGCTGCGGAAGAAGTATTGTACTCTGGACGTGTATCTACTGGTGCTCTTGATGATATACGCAGAGCTACAGACATGGCCTACAAGGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATG</genome_strand>
        <mrna_strand>ATGAAGCAGGGCACGCAGTAGTTGGGACTGCTGTTGCAAATCTTCTTTCCGGGCAGCCACGGGTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGAGCATATTGCCAAGATCTGGAGGGGCTTTAGGATTTACTTATATTCCTCCAACCAATGAGGACAGATATCTGCTCTTTGTTGATGAATTGCGTGGGAGGTTGGTCACTCTTCTTGGTGGACGTGCTGCGGAAGAAGTATTGTACTCTGGACGTGTATCTACTGGTGCTCTTGATGATATACGCAGAGCTACAGACATGGCCTACAAGGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710903" ref_strand="+" ref_description="SGN-E710903 [FA57BC06]">
      <seq>cccttttctttgttgatgaattgcgtgggaggttggtcactcctcttggtggacgtgctgcggaagaagtattgtactctggacgtgtatctactggtgctcttgatgatatacgcagagctacagacatggcctacaaggcagttgctgaatatggtcttagtcagaccattggccctatctcagtggcaacactttctggaggtgggatggatgatggtggatccatgtcctggggaagggaccaggggcatcttgttgatcttgttcaaagagaggccaaggctttactgcagtctgcacttgatattgcactctgtgttgtacgtgctaatcccaaagttcttgaggggttgcgagctcaattggaagagaatgagaaagtacaacgcgaccaactaccagaatggttgagcatggtcgttgcaccagcagaacttaattttttcataaagggccaaacaaggatctttacttccactgcaagcaggctctggatgacagaaagcgccagcttaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53600" stop="55336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53898" g_stop="54145" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54146" i_stop="54279" i_length="134">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54280" g_stop="54403" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="372" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54404" i_stop="54888" i_length="485">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54889" g_stop="55036" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="521" r_length="149" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E710903" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53898" e_stop="54145"/>
          <exon e_start="54280" e_stop="54403"/>
          <exon e_start="54889" e_stop="55036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGCTCTTTGTTGATGAATTGCGTGGGAGGTTGGTCACTCTTCTTGGTGGACGTGCTGCGGAAGAAGTATTGTACTCTGGACGTGTATCTACTGGTGCTCTTGATGATATACGCAGAGCTACAGACATGGCCTACAAGGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAGGTCTTTCCGCTTTTGCCCCTTTCTTGTTTTCTGAATTCTCTGCTTTTTTCTGCTCTAACATTTAATCCCAACTTATGTTTCTAACTTGAAAATACCACATCTTTAGCAGAACTGAAAGTAAAATTATTCCACAGGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAGGTAATATGTTCAATGTCACTTTAGTAGTCAAATTTTTGGTATTCTTTAGTATTGCTTTCTTTCAATTAACTTCACAAGGTAATGATTTTGCATTAAAGATAAATAGAAGAATCTCATTTTATTTTTAATATGTCATATTTTTAATATGTTAATTAATAACAAAGATCTCTTTATGATATGTGATGTGTCTTTTCCTTTCAATCTCTTTACCTTTTTCTTTGTGGAAGGTGGATACTCTTTCTATTCCATTTTATGACATTGTTTTGGTTTAGTATGTGTTAAAAGTATGGCACTCTTTTATGTTTGGGAACTCTCTAATTCTATACTTCCTATTGTACTGTCAATGTGATGCTCTTTTCACTACAAAAATGACATGTTTAAGACCACAAGTTTTTATGGGTACTATATGCTCAGACCGACATATAAAATGAAACTGGAGTTTTATATTTGGTACTCTTTTATGGATTGATATTTCTTCCTCTCAGAGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGG-CAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACC</genome_strand>
        <mrna_strand>CCCTTTTCTTTGTTGATGAATTGCGTGGGAGGTTGGTCACTCCTCTTGGTGGACGTGCTGCGGAAGAAGTATTGTACTCTGGACGTGTATCTACTGGTGCTCTTGATGATATACGCAGAGCTACAGACATGGCCTACAAGGCAGTTGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAG......................................................................................................................................GGGCATCTTGTTGATCTTGTTCAAAGAGAGGCCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGCGAGCTCAATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGAGAAAGTACAACGCGACCAACTACCAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCCAAACAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGCGCCAGCTTAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738320" ref_strand="+" ref_description="SGN-E738320 [LC13AH11]">
      <seq>gtggatcccccgggcctacaaggcagtggctgaatcttgtcttagtcagaccattggccctatctcagtggcaacactttctggaggtgggatggatgatggtggatccatgtcctggggaagggaccaggggcatcttgttgatcttgttcaaagagaggtcaaggctttactgcagtctgcacttgatattgcactctgtgttgtacgtgctaatcccaaagttcttgaggggttgggagctcaattggaagagaatgagaaagtagaaggtgagcaactacaagaatggttgagcatggtcgttgcaccagcagaacttaattttttcataaagggcaaagaaggatctttacttccactgcaagcaggctctggatgacagaaagtgcaagcttaacccagtcaacagagtacaaaaacgaatttcgaataaggatttccacgccttcatctgtgctctctagggaaacaaagctatattcctgaaccagatgggcatcacttgctggcatccagacagcgtgattttgcatgtgttagtaaggtaaattgacagctacttaactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccaagagtttcttggttctctagaggtgaaatgaaaataggctcgtgatcagagtgatgtctgttggtattttcttctacatcacttgtacatgtgcccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaagtgtgaaactgtgtatacaatgtaatctttctgattatgagacaaagtttcagtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53728" stop="55835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54015" g_stop="54145" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54146" i_stop="54279" i_length="134">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54280" g_stop="54403" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="254" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54404" i_stop="54888" i_length="485">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54889" g_stop="55536" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="902" r_length="648" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="903" polyA_stop="914"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E738320" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54015" e_stop="54145"/>
          <exon e_start="54280" e_stop="54403"/>
          <exon e_start="54889" e_stop="55536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTACAGACATGGCCTACAAGGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAGGTCTTTCCGCTTTTGCCCCTTTCTTGTTTTCTGAATTCTCTGCTTTTTTCTGCTCTAACATTTAATCCCAACTTATGTTTCTAACTTGAAAATACCACATCTTTAGCAGAACTGAAAGTAAAATTATTCCACAGGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAGGTAATATGTTCAATGTCACTTTAGTAGTCAAATTTTTGGTATTCTTTAGTATTGCTTTCTTTCAATTAACTTCACAAGGTAATGATTTTGCATTAAAGATAAATAGAAGAATCTCATTTTATTTTTAATATGTCATATTTTTAATATGTTAATTAATAACAAAGATCTCTTTATGATATGTGATGTGTCTTTTCCTTTCAATCTCTTTACCTTTTTCTTTGTGGAAGGTGGATACTCTTTCTATTCCATTTTATGACATTGTTTTGGTTTAGTATGTGTTAAAAGTATGGCACTCTTTTATGTTTGGGAACTCTCTAATTCTATACTTCCTATTGTACTGTCAATGTGATGCTCTTTTCACTACAAAAATGACATGTTTAAGACCACAAGTTTTTATGGGTACTATATGCTCAGACCGACATATAAAATGAAACTGGAGTTTTATATTTGGTACTCTTTTATGGATTGATATTTCTTCCTCTCAGAGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAG</genome_strand>
        <mrna_strand>GTG-GATCCCCCGGGCCTACAAGGCAGTGGCTGAATCTTGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAG......................................................................................................................................GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAAGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739437" ref_strand="+" ref_description="SGN-E739437 [LC17BH01]">
      <seq>gtggatcccccgggcctacaggcagtggctgaatctggtcttagtcagaccattggccctatctcagtggcaacactttctggaggtgggatggatgatggtggatccatgtcctggggaagggaccaggggcatcttgttgatcttgttcaaagagaggtcaaggctttactgcagtctgcacttgatattgcactctgtgttgtacgtgctaatcccaaagttcttgaggggttgggagctcaattggaagagaatgagaaagtagaaggtgagcaactacaagaatggttgagcatggtcgttgcaccagcagaacttaattttttcataaagggcaaagaaggatctttacttccactgcaagcaggctctggatgacagaaagtgcaagcttaacccagtcaacagagtacaaaaacgaatttcgaataaggatttccacgccttcatctgtgctctctagggaaacaaagctatattcctgaaccagatgggcatcacttgctggcatccagacagcgtgattttgcatgtgttagtaaggtaaattgacagctacttaactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccaagagtttcttggttctctagaggtgaaatgaaaataggctcgtgatcagagtgatgtctgttggtattttcttctacatcacttgtacatgtgcccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaggtgtgaaactgtgtatacaatgtaatctttctgattatgagacaaagtttcagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53728" stop="55835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54015" g_stop="54145" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54146" i_stop="54279" i_length="134">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54280" g_stop="54403" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="253" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54404" i_stop="54888" i_length="485">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54889" g_stop="55535" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="900" r_length="647" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E739437" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54015" e_stop="54145"/>
          <exon e_start="54280" e_stop="54403"/>
          <exon e_start="54889" e_stop="55535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTACAGACATGGCCTACAAGGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAGGTCTTTCCGCTTTTGCCCCTTTCTTGTTTTCTGAATTCTCTGCTTTTTTCTGCTCTAACATTTAATCCCAACTTATGTTTCTAACTTGAAAATACCACATCTTTAGCAGAACTGAAAGTAAAATTATTCCACAGGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAGGTAATATGTTCAATGTCACTTTAGTAGTCAAATTTTTGGTATTCTTTAGTATTGCTTTCTTTCAATTAACTTCACAAGGTAATGATTTTGCATTAAAGATAAATAGAAGAATCTCATTTTATTTTTAATATGTCATATTTTTAATATGTTAATTAATAACAAAGATCTCTTTATGATATGTGATGTGTCTTTTCCTTTCAATCTCTTTACCTTTTTCTTTGTGGAAGGTGGATACTCTTTCTATTCCATTTTATGACATTGTTTTGGTTTAGTATGTGTTAAAAGTATGGCACTCTTTTATGTTTGGGAACTCTCTAATTCTATACTTCCTATTGTACTGTCAATGTGATGCTCTTTTCACTACAAAAATGACATGTTTAAGACCACAAGTTTTTATGGGTACTATATGCTCAGACCGACATATAAAATGAAACTGGAGTTTTATATTTGGTACTCTTTTATGGATTGATATTTCTTCCTCTCAGAGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTA</genome_strand>
        <mrna_strand>GTG-GATCCCCCGGGCCTAC-AGGCAGTGGCTGAATCTGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAG......................................................................................................................................GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735941" ref_strand="+" ref_description="SGN-E735941 [LC03DA10]">
      <seq>gcggccgctctgaatagtggatcccccgggcctacaaggcagtggctgactatggtcttagtcagaccattggccctatctcagtggcaacactttctggaggtgggatggatgatggtggatccatgtcctggggaagggaccaggggcatcttgttgatcttgttcaaagagaggtcaaggctttactgcagtctgcacttgatattgcactctgtgttgtacgtgctaatcccaaagttcttgaggggttgggagctcaattggaagagaatgagaaagtagaaggtgagcaactacaagaatggttgagcatggtcgttgcaccagcagaacttaattttttcataaagggcaaagaaggatctttacttccactgcaagcaggctctggatgacagaaagtgcaagcttaacccagtcaacagagtacaaaaacgaatttcgaataaggatttccacgccttcatctgtgctctctagggaaacaaagctatattcctgaaccagatgggcatcacttgctggcatccagacagcgtgattttgcatgtgttagtaaggtaaattgacagctacttaactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccaagagtttcttggttctctagaggtgaaatgaaaataggctcgtgatcagagtgatgtctgttggtattttcttctacatcacttgtacatgtgcccaattattcttagtaattacacaagaatcaataccttaatatttgtatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaggtgtgaaactgtgtatacaatgtaatctttctgattatgagacaaagtttcagtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53728" stop="55835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54028" g_stop="54145" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="146" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54146" i_stop="54279" i_length="134">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54280" g_stop="54403" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="270" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54404" i_stop="54888" i_length="485">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54889" g_stop="55536" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="918" r_length="648" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="919" polyA_stop="931"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E735941" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54028" e_stop="54145"/>
          <exon e_start="54280" e_stop="54403"/>
          <exon e_start="54889" e_stop="55536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCTACAAGGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAGGTCTTTCCGCTTTTGCCCCTTTCTTGTTTTCTGAATTCTCTGCTTTTTTCTGCTCTAACATTTAATCCCAACTTATGTTTCTAACTTGAAAATACCACATCTTTAGCAGAACTGAAAGTAAAATTATTCCACAGGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAGGTAATATGTTCAATGTCACTTTAGTAGTCAAATTTTTGGTATTCTTTAGTATTGCTTTCTTTCAATTAACTTCACAAGGTAATGATTTTGCATTAAAGATAAATAGAAGAATCTCATTTTATTTTTAATATGTCATATTTTTAATATGTTAATTAATAACAAAGATCTCTTTATGATATGTGATGTGTCTTTTCCTTTCAATCTCTTTACCTTTTTCTTTGTGGAAGGTGGATACTCTTTCTATTCCATTTTATGACATTGTTTTGGTTTAGTATGTGTTAAAAGTATGGCACTCTTTTATGTTTGGGAACTCTCTAATTCTATACTTCCTATTGTACTGTCAATGTGATGCTCTTTTCACTACAAAAATGACATGTTTAAGACCACAAGTTTTTATGGGTACTATATGCTCAGACCGACATATAAAATGAAACTGGAGTTTTATATTTGGTACTCTTTTATGGATTGATATTTCTTCCTCTCAGAGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAG</genome_strand>
        <mrna_strand>GGCCTACAAGGCAGTGGCTGACTATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAG......................................................................................................................................GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTTGTATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735465" ref_strand="+" ref_description="SGN-E735465 [LC01CG05]">
      <seq>ctacaggcagtggctgaatatgtgtcttagtcagaccattggccctatctcagtggcaacactttctggaggtgggatggatgatggtggatccatgtcctggggaagggaccaggggcatcttgttgatcttgttcaaagagaggtcaaggctttactgcagtctgcacttgatattgcactctgtgttgtacgtgctaatcccaaagttcttgaggggttgggagctcaattggaagagaatgagaaagtagaaggtgagcaactacaagaatggttgagcatggtcgttgcaccagcagaacttaattttttcataaagggcaaagaaggatctttacttccactgcaagcaggctctggatgacagaaagtgcaagcttaacccagtcaacagagtacaaaaacgaatttcgaataaggatttccacgccttcatctgtgctctctagggaaacaaagctatattcctgaaccagatgggcatcacttgctggcatccagacagcgtgattttgcatgtgttagtaaggtaaattgacagctacttaactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccaagagtttcttggttctctagaggtgaaatgaaaataggctcgtgatcagagtgatgtctgttggtattttcttctacatcacttgtacatgtgcccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaagtgtgaaactgtgtatacaatgtaatctttctgattatgagacaaagtttcagtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53731" stop="55835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54031" g_stop="54145" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54146" i_stop="54279" i_length="134">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54280" g_stop="54403" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="239" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54404" i_stop="54888" i_length="485">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54889" g_stop="55536" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="887" r_length="648" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="888" polyA_stop="898"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E735465" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54031" e_stop="54145"/>
          <exon e_start="54280" e_stop="54403"/>
          <exon e_start="54889" e_stop="55536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAGGCAGTGGCTGAATATG-GTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAGGTCTTTCCGCTTTTGCCCCTTTCTTGTTTTCTGAATTCTCTGCTTTTTTCTGCTCTAACATTTAATCCCAACTTATGTTTCTAACTTGAAAATACCACATCTTTAGCAGAACTGAAAGTAAAATTATTCCACAGGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAGGTAATATGTTCAATGTCACTTTAGTAGTCAAATTTTTGGTATTCTTTAGTATTGCTTTCTTTCAATTAACTTCACAAGGTAATGATTTTGCATTAAAGATAAATAGAAGAATCTCATTTTATTTTTAATATGTCATATTTTTAATATGTTAATTAATAACAAAGATCTCTTTATGATATGTGATGTGTCTTTTCCTTTCAATCTCTTTACCTTTTTCTTTGTGGAAGGTGGATACTCTTTCTATTCCATTTTATGACATTGTTTTGGTTTAGTATGTGTTAAAAGTATGGCACTCTTTTATGTTTGGGAACTCTCTAATTCTATACTTCCTATTGTACTGTCAATGTGATGCTCTTTTCACTACAAAAATGACATGTTTAAGACCACAAGTTTTTATGGGTACTATATGCTCAGACCGACATATAAAATGAAACTGGAGTTTTATATTTGGTACTCTTTTATGGATTGATATTTCTTCCTCTCAGAGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAG</genome_strand>
        <mrna_strand>CTACA-GGCAGTGGCTGAATATGTGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAG......................................................................................................................................GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAAGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740140" ref_strand="+" ref_description="SGN-E740140 [LC20BA06]">
      <seq>ctacaggcagtggctgaatatggtcttagtcagaccattggccctatctcagtggcaacactttctggaggtgggatggatgatggtggatccatgtcctggggaagggaccaggggcatcttgttgatcttgttcaaagagaggtcaaggctttactgcagtctgcacttgatattgcactctgtgttgtacgtgctaatcccaaagttcttgaggggttgggagctcaattggaagagaatgagaaagtagaaggtgagcaactacaagaatggttgagcatggtcgttgcaccagcagaacttaattttttcataaagggcaaagaaggatctttacttccactgcaagcaggctctggatgacagaaagtgcaagcttaacccagtcaacagagtacaaaaacgaatttcgaataaggatttccacgccttcatctgtgctctctagggaaacaaagctatattcctgaaccagatgggcatcacttgctggcatccagacagcgtgattttgcatgtgttagtaaggtaaattgacagctacttaactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccaagagtttcttggttctctagaggtgaaatgaaaataggctcgtgatcagagtgatgtctgttggtattttcttctacatcacttgtacatgtgcccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaggtgtgaaactgtgtatacaatgtaatctttctgaatatgagacaaagtttcagtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53731" stop="55835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54031" g_stop="54145" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54146" i_stop="54279" i_length="134">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54280" g_stop="54403" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="238" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54404" i_stop="54888" i_length="485">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54889" g_stop="55536" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="886" r_length="648" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="887" polyA_stop="896"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E740140" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54031" e_stop="54145"/>
          <exon e_start="54280" e_stop="54403"/>
          <exon e_start="54889" e_stop="55536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAGGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAGGTCTTTCCGCTTTTGCCCCTTTCTTGTTTTCTGAATTCTCTGCTTTTTTCTGCTCTAACATTTAATCCCAACTTATGTTTCTAACTTGAAAATACCACATCTTTAGCAGAACTGAAAGTAAAATTATTCCACAGGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAGGTAATATGTTCAATGTCACTTTAGTAGTCAAATTTTTGGTATTCTTTAGTATTGCTTTCTTTCAATTAACTTCACAAGGTAATGATTTTGCATTAAAGATAAATAGAAGAATCTCATTTTATTTTTAATATGTCATATTTTTAATATGTTAATTAATAACAAAGATCTCTTTATGATATGTGATGTGTCTTTTCCTTTCAATCTCTTTACCTTTTTCTTTGTGGAAGGTGGATACTCTTTCTATTCCATTTTATGACATTGTTTTGGTTTAGTATGTGTTAAAAGTATGGCACTCTTTTATGTTTGGGAACTCTCTAATTCTATACTTCCTATTGTACTGTCAATGTGATGCTCTTTTCACTACAAAAATGACATGTTTAAGACCACAAGTTTTTATGGGTACTATATGCTCAGACCGACATATAAAATGAAACTGGAGTTTTATATTTGGTACTCTTTTATGGATTGATATTTCTTCCTCTCAGAGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAG</genome_strand>
        <mrna_strand>CTACA-GGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAG......................................................................................................................................GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGAATATGAGACAAAGTTTCAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736827" ref_strand="+" ref_description="SGN-E736827 [LC07BH03]">
      <seq>ctacaggcagtggctgaatatggtcttagtcagaccattggccctatctcagtggcaacactttctggaggtgggatggatgatggtggatccatgtcctggggaagggaccaggggcatcttgttgatcttgttcaaagagaggtcaaggctttactgcagtctgcacttgatattgcactctgtgttgtacgtgctaatcccaaagttcttgaggggttgggagctcaattggaagagaatgagaaagtagaaggtgagcaactacaagaatggttgagcatggtcgttgcaccagcagaacttaattttttcataaagggcaaagaaggatctttacttccactgcaagcaggctctggatgacagaaagtgcaagcttaacccagtcaacagagtacaaaaacgaatttcgaataaggatttccacgccttcatctgtgctctctagggaaacaaagctatattcctgaaccagatgggcatcacttgctggcatccagacagcgtgattttgcatgtgttagtaaggtaaattgacagctacttaactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccaagagtttcttggttctctagaggtgaaatgaaaataggctcgtgatcagagtgatgtctgttggtattttcttctacatcacttgtacatgtgcccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccctgtctaatgtttgtgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53731" stop="55778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54031" g_stop="54145" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54146" i_stop="54279" i_length="134">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54280" g_stop="54403" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="238" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54404" i_stop="54888" i_length="485">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54889" g_stop="55478" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="828" r_length="590" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E736827" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54031" e_stop="54145"/>
          <exon e_start="54280" e_stop="54403"/>
          <exon e_start="54889" e_stop="55478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAGGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAGGTCTTTCCGCTTTTGCCCCTTTCTTGTTTTCTGAATTCTCTGCTTTTTTCTGCTCTAACATTTAATCCCAACTTATGTTTCTAACTTGAAAATACCACATCTTTAGCAGAACTGAAAGTAAAATTATTCCACAGGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAGGTAATATGTTCAATGTCACTTTAGTAGTCAAATTTTTGGTATTCTTTAGTATTGCTTTCTTTCAATTAACTTCACAAGGTAATGATTTTGCATTAAAGATAAATAGAAGAATCTCATTTTATTTTTAATATGTCATATTTTTAATATGTTAATTAATAACAAAGATCTCTTTATGATATGTGATGTGTCTTTTCCTTTCAATCTCTTTACCTTTTTCTTTGTGGAAGGTGGATACTCTTTCTATTCCATTTTATGACATTGTTTTGGTTTAGTATGTGTTAAAAGTATGGCACTCTTTTATGTTTGGGAACTCTCTAATTCTATACTTCCTATTGTACTGTCAATGTGATGCTCTTTTCACTACAAAAATGACATGTTTAAGACCACAAGTTTTTATGGGTACTATATGCTCAGACCGACATATAAAATGAAACTGGAGTTTTATATTTGGTACTCTTTTATGGATTGATATTTCTTCCTCTCAGAGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGA</genome_strand>
        <mrna_strand>CTACA-GGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAG......................................................................................................................................GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCCTGTCTAATGTTTGTGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281960" ref_strand="+" ref_description="SGN-E281960 [cLES-2-A2]">
      <seq>tgaatatggtcttagtcagaccattggccctatctcagtggcaacactttctggaggtgggatggatgatggtggatccatgtcctggggaagggaccaggggcatcttgttgatcttgttcaaagagaggtcaaggctttactgcagtctgcacttgatattgcactctgcgttgtacgtgctaatcccaaagttcttgaggggttgggagctcaattggaagagaatgagaaagtagaaagtgagcaactacaagaatggttgagcatggtcgttgcaccagcagaacttaattttttcataaagggcaaagaatgatctttacttccactgcaagcaggctctggatgacagaaagtgcaagcttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53746" stop="55335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54046" g_stop="54145" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54146" i_stop="54279" i_length="134">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54280" g_stop="54403" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="224" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54404" i_stop="54888" i_length="485">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54889" g_stop="55035" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="371" r_length="147" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E281960" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54046" e_stop="54145"/>
          <exon e_start="54280" e_stop="54403"/>
          <exon e_start="54889" e_stop="55035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAGGTCTTTCCGCTTTTGCCCCTTTCTTGTTTTCTGAATTCTCTGCTTTTTTCTGCTCTAACATTTAATCCCAACTTATGTTTCTAACTTGAAAATACCACATCTTTAGCAGAACTGAAAGTAAAATTATTCCACAGGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAGGTAATATGTTCAATGTCACTTTAGTAGTCAAATTTTTGGTATTCTTTAGTATTGCTTTCTTTCAATTAACTTCACAAGGTAATGATTTTGCATTAAAGATAAATAGAAGAATCTCATTTTATTTTTAATATGTCATATTTTTAATATGTTAATTAATAACAAAGATCTCTTTATGATATGTGATGTGTCTTTTCCTTTCAATCTCTTTACCTTTTTCTTTGTGGAAGGTGGATACTCTTTCTATTCCATTTTATGACATTGTTTTGGTTTAGTATGTGTTAAAAGTATGGCACTCTTTTATGTTTGGGAACTCTCTAATTCTATACTTCCTATTGTACTGTCAATGTGATGCTCTTTTCACTACAAAAATGACATGTTTAAGACCACAAGTTTTTATGGGTACTATATGCTCAGACCGACATATAAAATGAAACTGGAGTTTTATATTTGGTACTCTTTTATGGATTGATATTTCTTCCTCTCAGAGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAAC</genome_strand>
        <mrna_strand>TGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAG......................................................................................................................................GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGCGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGAGAAAGTAGAAAGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAATGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340881" ref_strand="+" ref_description="SGN-E340881 [cTOF-5-A23]">
      <seq>taatcccaaagttcttgaggggttgggagctcaattggaagagaatgagaaagtagaaggtgagcaactacaagaatggttgagcatggtcgttgcaccagcagaacttaattttttcataaagggcaaagaaggatctttacttccactgcaagcaggctctggatgacagaaagtgcaagcttaacccagtcaacagagtacaaaaacgaatttcgaataaggatttccacgccttcatctgtgctctctagggaaacaaagctatattcctgaaccagatgggcatcacttgctggcatccagacagcgtgattttgcatgtgttagtaaggtaaattgacagctacttaactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccaagagtttcttggttctctagaggtgaaatgaaaataggctcgtgatcagagtgatgtctgttggtattttcttctacatcacttgtacatgtgcccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaagtgtgaaactgtgtatacaatgtaatctttctgattatgagacaaagtttcagtaggttgccataaatcttgacttgtgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54063" stop="55870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54363" g_stop="54403" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54404" i_stop="54888" i_length="485">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54889" g_stop="55571" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="724" r_length="683" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E340881" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54363" e_stop="54403"/>
          <exon e_start="54889" e_stop="55571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAGGTAATATGTTCAATGTCACTTTAGTAGTCAAATTTTTGGTATTCTTTAGTATTGCTTTCTTTCAATTAACTTCACAAGGTAATGATTTTGCATTAAAGATAAATAGAAGAATCTCATTTTATTTTTAATATGTCATATTTTTAATATGTTAATTAATAACAAAGATCTCTTTATGATATGTGATGTGTCTTTTCCTTTCAATCTCTTTACCTTTTTCTTTGTGGAAGGTGGATACTCTTTCTATTCCATTTTATGACATTGTTTTGGTTTAGTATGTGTTAAAAGTATGGCACTCTTTTATGTTTGGGAACTCTCTAATTCTATACTTCCTATTGTACTGTCAATGTGATGCTCTTTTCACTACAAAAATGACATGTTTAAGACCACAAGTTTTTATGGGTACTATATGCTCAGACCGACATATAAAATGAAACTGGAGTTTTATATTTGGTACTCTTTTATGGATTGATATTTCTTCCTCTCAGAGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATAATCTTTGACTTGTGTAAAATTACAAG</genome_strand>
        <mrna_strand>TAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAAGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATAAATCTTGACTTGTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734383" ref_strand="+" ref_description="SGN-E734383 [LB12CB03]">
      <seq>ctcaattggaagagaatgagaaagtagaaggtgagcaactacaagaatggttgagcatggtcgttgcaccagcagaacttaattttttcataaagggcaaagaaggatctttacttccactgcaagcaggctctggatgacagaaagtgcaagcttaacccagtcaacagagtacaaaaacgaatttcgaataaggatttccacgccttcatctgtgctctctagggaaacaaagctatattcctgaaccagatgggcatcacttgctggcatccagacagcgtgattttgcatgtgttagtaaggtaaattgacagctacttaactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccaagagtttcttggttctctagaggtgaaatgaaaataggctcgtgatcagagtgatgtctgttggtattttcttctacatcacttgtacatgtgcccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaggtgtgaaactgtgtatacaatgtaatctttctgattatgagacaaagtttcagtaggttgccataananaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54587" stop="55846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54889" g_stop="55545" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="669" r_length="657" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="691"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E734383" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54889" e_stop="55545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATA</genome_strand>
        <mrna_strand>AGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711797" ref_strand="+" ref_description="SGN-E711797 [FB03AA11]">
      <seq>ttcgaataaggatctgtacgccttcatctgtgctctctagggaaacaaagctatattcctgaaccagatgggcatcacttgctggcatccagacagcgtgattttgcatgtaattgacagctacgtaactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccaagagtttcttggttctagaggtgaaatgaaaatagtttaggctcgtgatcagagtgatgtctgttggtattttcttctacatcacttgtacatgtgcccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaggtgtgaaactgtgtatacaatgtaatctttctgattatgagacaaagtttcagtaggttgccataatctttgacttgtgtaaaattacaagtattggatgaggtaatagtgacaattccttatgcttgtggttaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54762" stop="55915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55062" g_stop="55615" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="546" polyA_stop="569"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E711797" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55062" e_stop="55615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATG-AAA-A---TAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATAATCTTTGACTTGTGTAAAATTACAAGTATTGGATGAGGTAATAGTGACAATTCTTTGTGCTTGTGGTTAA</genome_strand>
        <mrna_strand>TTCGAATAAGGATCTGTACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGC-------A-T---GT-AATTGACAGCTACGTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGG-T-TCTAGAGGTGAAATGAAAATAGTTTAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATAATCTTTGACTTGTGTAAAATTACAAGTATTGGATGAGGTAATAGTGACAATTCCTTATGCTTGTGGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692354" ref_strand="+" ref_description="SGN-E692354 [LH_Ea08H24]">
      <seq>ttggcatccagacagcgtgattttgcatgtgttagtaacgtaattgacagctacttaactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccgagagtttcttggttctagaggtgaaatgaaaataggctcgtgatcacagtgatgtctgttggtattttcttctacatcacttgtacatgtgccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaggtgtggagctgtgtatacaatgtaatctttctgattatgagacaaagtatcagtaggttgccataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54844" stop="55846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55143" g_stop="55545" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="400" polyA_stop="414"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E692354" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55143" e_stop="55545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATA</genome_strand>
        <mrna_strand>TTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAACGT-AATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCGAGAGTTTCTTGG-T-TCTAGAGGTGAAATGAAAATAGGCTCGTGATCACAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTG-CCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGGAGCTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTATCAGTAGGTTGCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696194" ref_strand="+" ref_description="SGN-E696194 [LH_Ea08H24](-)">
      <seq>ctggcatccagacagcgtgattttgcatgtgttagtaaggtaattgacagctacttaactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccgagagtttcttggttctagaggtgaaatgaaaataggctcgtgatcacagtgatgtctgttggtattttcttttacatcacttgtacatgtgccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaggtgtggagctgtgtatacaatgtaatctttctgattaagggacaaagtatcagtaggttgcctttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54843" stop="55846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55143" g_stop="55542" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="400" polyA_stop="419"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E696194" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55143" e_stop="55542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCC</genome_strand>
        <mrna_strand>CTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGT-AATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCGAGAGTTTCTTGG-T-TCTAGAGGTGAAATGAAAATAGGCTCGTGATCACAGTGATGTCTGTTGGTATTTTCTTTTACATCACTTGTACATGTG-CCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGGAGCTGTGTATACAATGTAATCTTTCTGATTAAGGGACAAAGTATCAGTAGGTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220268" ref_strand="+" ref_description="SGN-E220268 [cLEL-12-D18](-)">
      <seq>gtgttagtaaggtaaattgacagcacttagactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccaagagtttcttggttctctagaggtgaaatgaaaataggctcgtgatcagagtgatgtctgttggtattttcttctacatcacttgtacatgtgcccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaggtgtgaaactgtgtatacaatgtaatctttctgattatgagacaaagtttcagtaggttgccataatctttgacttgtgtaaaattacaagtattggatgaggtaatagtgacaattccttgtgcttgtggttaaaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54871" stop="55915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55171" g_stop="55615" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="446" polyA_stop="460"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E220268" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55171" e_stop="55615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTAGTAAGGTAAATTGACAGCTACTTA-ACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATAATCTTTGACTTGTGTAAAATTACAAGTATTGGATGAGGTAATAGTGACAATTCTTTGTGCTTGTGGTTAA</genome_strand>
        <mrna_strand>GTGTTAGTAAGGTAAATTGACAGC-ACTTAGACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATAATCTTTGACTTGTGTAAAATTACAAGTATTGGATGAGGTAATAGTGACAATTCCTTGTGCTTGTGGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220170" ref_strand="+" ref_description="SGN-E220170 [cLEL-12-D18](-)">
      <seq>tttcttggttctctaaaggtgaaatgaaaataggctcgtgatcagagtaatgtctgttggtaattttcttctacatcacttgaacatgtgcccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaggtgtgaaactgtgtatacaatgtaatctttctgattatgagacaaagtttcagtaggttgccataatctttgacttgtgtaaaattacaagtattggatgaggtaatagtaacaattccttgtgcatgtggttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54985" stop="55915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55285" g_stop="55615" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="333" polyA_stop="347"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E220170" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55285" e_stop="55615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGT-ATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATAATCTTTGACTTGTGTAAAATTACAAGTATTGGATGAGGTAATAGTGACAATTCTTTGTGCTTGTGGTTAA</genome_strand>
        <mrna_strand>TTTCTTGGTTCTCTAAAGGTGAAATGAAAATAGGCTCGTGATCAGAGTAATGTCTGTTGGTAATTTTCTTCTACATCACTTGAACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATAATCTTTGACTTGTGTAAAATTACAAGTATTGGATGAGGTAATAGTAACAATTCCTTGTGCATGTGGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373652" ref_strand="+" ref_description="SGN-E373652 [TUS-33-O16](-)">
      <seq>tccttgtttatgacataacaaagggacaaacattcgacaatgttcaaaggtggctccgagaattgagagaccatgcagattctaacattgtcattatgatggctggaaacaagtccgaccttaaccaccttcgagcagtctctgagcaggatggtcaaaatttagctgagaaggaaggactgtcatttcttgagacatcggcattggaagcagtcaacgtagataaggcttttcagactatactaaccgagatataccatatcataagcaagaaggcgctggctgcacaagcagcagccacaaccactactcttcctggtcagggtacaaccatcaatgttaatgacacctctgataatgtgaagagaggctgctgttctacctgagttaaaaaagtttgaacaaggaaacgagattcggtatatttaaatttttttggtttattttacattattcatcagagcaagagatgtagattactttcttgattatacaagagaaagggcttgtgaatgttaattgtcctagtgatttaggaaagatctattcttcatgtggtgtactgtttaactattttcttttagcttataagaagagattagcttatctaatatcttcccagatacttgttactatacaggagattcaattaaattcttgcatcttcatctgtattattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67557" stop="66275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67257" g_stop="66577" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="682" polyA_stop="691"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E373652" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67257" e_stop="66577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTCATTTCTTGAGACATCGGCATTGGAAGCAGTCAACGTAGATAAGGCTTTTCAGACTATACTAACCGAGATATACCATATCATAAGCAAGAAGGCGCTGGCTGCACAAGCAGCAGCCACAACCACTACTCTTCCTGGTCAGGGTACAACCATCAATGTTAATGACACCTCTGATAATGTGAAGAGAGGCTGCTGTTCTACCTGAGTTAAAAAAGTTTGAACAAGGAAACGAGATTCGGTATATTTAAATTTTTTTGGTTTATTTTACATTATTCATCAGAGCAAGAGATGTAGATTACTTTCTTGATTATACAAGAGAAAGGGCTTGTGAATGTTAATTGTCCTAGTGATTTAGGAAAGATCTATTCTTCATGTGGTGTACTGTTTAACTATTTTCTTTTAGCTTATAAGAAGAGATTAGCTTATCTAATATCTTCCCAGATACTTGTTACTATACAGGAGATTCAATTAAATTCTTGCATCTTCATCTGTATTATTTT</genome_strand>
        <mrna_strand>TCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTCATTTCTTGAGACATCGGCATTGGAAGCAGTCAACGTAGATAAGGCTTTTCAGACTATACTAACCGAGATATACCATATCATAAGCAAGAAGGCGCTGGCTGCACAAGCAGCAGCCACAACCACTACTCTTCCTGGTCAGGGTACAACCATCAATGTTAATGACACCTCTGATAATGTGAAGAGAGGCTGCTGTTCTACCTGAGTTAAAAAAGTTTGAACAAGGAAACGAGATTCGGTATATTTAAATTTTTTTGGTTTATTTTACATTATTCATCAGAGCAAGAGATGTAGATTACTTTCTTGATTATACAAGAGAAAGGGCTTGTGAATGTTAATTGTCCTAGTGATTTAGGAAAGATCTATTCTTCATGTGGTGTACTGTTTAACTATTTTCTTTTAGCTTATAAGAAGAGATTAGCTTATCTAATATCTTCCCAGATACTTGTTACTATACAGGAGATTCAATTAAATTCTTGCATCTTCATCTGTATTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733635" ref_strand="+" ref_description="SGN-E733635 [LB10CB09]">
      <seq>cgtgaaatgagttctgtttggagtcaaaatctactattggagttgagttcgccactagaactcttcaggttgagggaaagacagtcaaggcccaaatatgggacactgcaggccaagaacggtaccgagccattaccagtgcttattacagaggagcagttggtgcactccttgtttatgacataacaaagggacaaacattcgacaatgttcaaaggtggctccgagaattgagagaccatgcagattctaacattgtcattatgatggctggaaacaagtccgaccttaaccaccttcgagcagtctctgagcaggatggtcaaaatttagctgagaaggaaggactgtcatttcttgagacatcggcattggaagcagtcaacgtagataaggcttttcagactatactaaccgagatataccatatcataagcaagaaggcgctggctgcacaagcagcagccacaaccactactcttcctggtcagggtacaaccatcaatgttaatgacacctctgataatgtgaagagaggctgctgttctacctgagttaaaaaagtttgaacaaggaaacgagattcggtatatttaaatttttttggtttattttacattattcatcagagcaagagatgtagattactttcttgattatacaagagaaagggcttgtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69246" stop="66445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68946" g_stop="68879" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68878" i_stop="67358" i_length="1521">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67357" g_stop="66744" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="682" r_length="614" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E733635" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68946" e_stop="68879"/>
          <exon e_start="67357" e_stop="66744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGAAATGAGTTCTGTTTGGAGTCAAAATCTACTATTGGAGTTGAGTTCGCCACTAGAACTCTTCAGGTTAGTACTGATATCACTTTGTTCTAAGTTTAATTTGAAATTTGGTATTGTTTGAGCTCTTAATGTAGTAGTGGTGTTGTATAAGTTCATACCGAAAATTTTTACTCCTGAAAATTGGGGGTAGGGAATCGAACAGTCAGTAACAAGTTGAAAGTTCAGATTGCTATTAACATTCCATGAAAATTGATACTCCTGTTGTGAACTGCTTGACACTTTTCATATCTCGAGATTTAAACTAAAGTAAAGATTATTAACAATATTTTAGGAATGTAATCTGTATCATTTTTTATATGAGGGGAATTGTTTCATGTAGTTTCTATTTTAGGATAAATCTGATTTTTTATTTAAAAGAATAAATTTCGCTTGTTTTTCCTCCATATATAGTCAAATTGACTCTACAAAAGTGTAAAAAAAATGGAGATGGAGGGAATCATACTATCATCTATAGCCTAGTGGAATGTTGATTATTTTATGTGATTTTGTTGAATTTTTTGTGATTATTGATGAGAATAGTGTAGAGATTGGTGGAGTGGTAAAGCCGGTGTATTTTTAGCATCTCCGGTATTCGAGTTGCCGGTTAAATGGATGACTAAAATTTAGGTGGATCAGTTGATGATTGCCCTTTTCTTCCTCTGGTCTGATACAATTCTGGCTAAATGACCATTTTTTATTTTTAAGTTCTAAGGACAAATCAATATATTATAGCATAAACATCAGGTACTGTGAACTCATGAAATCTGTTTCTTCCTCTTTTCAGTAGCCTACAATATTTAGTTGTATTTTCAAGTATGAACAAGATACTAGCACATAGATGCAGTCATGCAGCTGCAACATTCTGTATATATATTCTTGTTTGGAATGAAGTAGTTCAATGATTGTCATGTGTAATGTTAGCAATGAATTTTTTTGAGTTTTGATCTATCTGTACTTCCACTAATGTGCTTTTAAGAAAAAATGTTGATCCGCTTATTGTATGCCTCGGTTTTCTTACTATCCTGCTGTTTTTACGTCTTATATCTCCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCGAGGGTTTATCCGAAACAGTTTCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGTATACTTTCCTCCCCATACCCCACTTATGGGACTATACTAAGAATGTAGTTGTTGGTCTTCTTATGACCTGGAATTTCCGCTTTTAATTGTTATATGTTGGCTCAATCTGATGCTTCTACGTTTTTTTTGTTCTGTTGAAATGAAATTATTGGATGGCAGGACTGGTTGTCTATCTGTAATTTGAATTTGAGTATTTTAATGGTGCTTATGTCCTTTGAGGAAAACCAAATGCTCTGAAATTCTCAACTTTTAAAACTCTTTAAGCTTGGGTGAACCAGGTGTTTGCTTTCTGCTAGCCACAATATCCAATTCCATTTGATAAATTTGCTTTTTCTTTGGCGGGTAAACGTGGCTGAAATGGAATTTATTGTACTGATATCAACACTCATGGGCTATCTACTTCATGATACAGGTTGAGGGAAAGACAGTCAAGGCCCAAATATGGGACACTGCAGGCCAAGAACGGTACCGAGCCATTACCAGTGCTTATTACAGAGGAGCAGTTGGTGCACTCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTCATTTCTTGAGACATCGGCATTGGAAGCAGTCAACGTAGATAAGGCTTTTCAGACTATACTAACCGAGATATACCATATCATAAGCAAGAAGGCGCTGGCTGCACAAGCAGCAGCCACAACCACTACTCTTCCTGGTCAGGGTACAACCATCAATGTTAATGACACCTCTGATAATGTGAAGAGAGGCTGCTGTTCTACCTGAGTTAAAAAAGTTTGAACAAGGAAACGAGATTCGGTATATTTAAATTTTTTTGGTTTATTTTACATTATTCATCAGAGCAAGAGATGTAGATTACTTTCTTGATTATACAAGAGAAAGGGCTTGTGAAT</genome_strand>
        <mrna_strand>CGTGAAATGAGTTCTGTTTGGAGTCAAAATCTACTATTGGAGTTGAGTTCGCCACTAGAACTCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGGAAAGACAGTCAAGGCCCAAATATGGGACACTGCAGGCCAAGAACGGTACCGAGCCATTACCAGTGCTTATTACAGAGGAGCAGTTGGTGCACTCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTCATTTCTTGAGACATCGGCATTGGAAGCAGTCAACGTAGATAAGGCTTTTCAGACTATACTAACCGAGATATACCATATCATAAGCAAGAAGGCGCTGGCTGCACAAGCAGCAGCCACAACCACTACTCTTCCTGGTCAGGGTACAACCATCAATGTTAATGACACCTCTGATAATGTGAAGAGAGGCTGCTGTTCTACCTGAGTTAAAAAAGTTTGAACAAGGAAACGAGATTCGGTATATTTAAATTTTTTTGGTTTATTTTACATTATTCATCAGAGCAAGAGATGTAGATTACTTTCTTGATTATACAAGAGAAAGGGCTTGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734030" ref_strand="+" ref_description="SGN-E734030 [LB11CD06]">
      <seq>cgcgaaatgagttctgtttggagtcaaaatctactattggagttgagttcgccactagaactcttcaggttgagggaaagacagtcaaggcccaaatatgggacactgcaggccaagaacggtaccgagccattaccagtgcttattacagaggagcagttggtgcactccttgtttatgacataacaaagggacaaacattcgacaatgttcaaaggtggctccgagaattgagagaccatgcagattctaacattgtcattatgatggctggaaacaagtccgaccttaaccaccttcgagcagtctctgagcaggatggtcaaaatttagctgagaaggaaggactgtcatttcttgagacatcggcattggaagcagtcaacgtagataaggcttttcagactatactaaccgagatataccatatcataagcaagaaggcgctggctgcacaagcagcagccacaaccactactcttcctggtcagggtacaaccatcaatgttaatgacacctctgataatgtgaagagaggctgctgttctacctgagttaaaaaagtttgaacaaggaaacgagattcggtatatttaaatttttttggtttattttacattattcatcagagcaagagatgtagattactttcttgattatacaagagaaagggcttgtgaaaannaaanaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69246" stop="66445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68946" g_stop="68879" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68878" i_stop="67358" i_length="1521">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67357" g_stop="66746" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="680" r_length="612" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="686" polyA_stop="700"/>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E734030" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68946" e_stop="68879"/>
          <exon e_start="67357" e_stop="66746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGAAATGAGTTCTGTTTGGAGTCAAAATCTACTATTGGAGTTGAGTTCGCCACTAGAACTCTTCAGGTTAGTACTGATATCACTTTGTTCTAAGTTTAATTTGAAATTTGGTATTGTTTGAGCTCTTAATGTAGTAGTGGTGTTGTATAAGTTCATACCGAAAATTTTTACTCCTGAAAATTGGGGGTAGGGAATCGAACAGTCAGTAACAAGTTGAAAGTTCAGATTGCTATTAACATTCCATGAAAATTGATACTCCTGTTGTGAACTGCTTGACACTTTTCATATCTCGAGATTTAAACTAAAGTAAAGATTATTAACAATATTTTAGGAATGTAATCTGTATCATTTTTTATATGAGGGGAATTGTTTCATGTAGTTTCTATTTTAGGATAAATCTGATTTTTTATTTAAAAGAATAAATTTCGCTTGTTTTTCCTCCATATATAGTCAAATTGACTCTACAAAAGTGTAAAAAAAATGGAGATGGAGGGAATCATACTATCATCTATAGCCTAGTGGAATGTTGATTATTTTATGTGATTTTGTTGAATTTTTTGTGATTATTGATGAGAATAGTGTAGAGATTGGTGGAGTGGTAAAGCCGGTGTATTTTTAGCATCTCCGGTATTCGAGTTGCCGGTTAAATGGATGACTAAAATTTAGGTGGATCAGTTGATGATTGCCCTTTTCTTCCTCTGGTCTGATACAATTCTGGCTAAATGACCATTTTTTATTTTTAAGTTCTAAGGACAAATCAATATATTATAGCATAAACATCAGGTACTGTGAACTCATGAAATCTGTTTCTTCCTCTTTTCAGTAGCCTACAATATTTAGTTGTATTTTCAAGTATGAACAAGATACTAGCACATAGATGCAGTCATGCAGCTGCAACATTCTGTATATATATTCTTGTTTGGAATGAAGTAGTTCAATGATTGTCATGTGTAATGTTAGCAATGAATTTTTTTGAGTTTTGATCTATCTGTACTTCCACTAATGTGCTTTTAAGAAAAAATGTTGATCCGCTTATTGTATGCCTCGGTTTTCTTACTATCCTGCTGTTTTTACGTCTTATATCTCCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCGAGGGTTTATCCGAAACAGTTTCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGTATACTTTCCTCCCCATACCCCACTTATGGGACTATACTAAGAATGTAGTTGTTGGTCTTCTTATGACCTGGAATTTCCGCTTTTAATTGTTATATGTTGGCTCAATCTGATGCTTCTACGTTTTTTTTGTTCTGTTGAAATGAAATTATTGGATGGCAGGACTGGTTGTCTATCTGTAATTTGAATTTGAGTATTTTAATGGTGCTTATGTCCTTTGAGGAAAACCAAATGCTCTGAAATTCTCAACTTTTAAAACTCTTTAAGCTTGGGTGAACCAGGTGTTTGCTTTCTGCTAGCCACAATATCCAATTCCATTTGATAAATTTGCTTTTTCTTTGGCGGGTAAACGTGGCTGAAATGGAATTTATTGTACTGATATCAACACTCATGGGCTATCTACTTCATGATACAGGTTGAGGGAAAGACAGTCAAGGCCCAAATATGGGACACTGCAGGCCAAGAACGGTACCGAGCCATTACCAGTGCTTATTACAGAGGAGCAGTTGGTGCACTCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTCATTTCTTGAGACATCGGCATTGGAAGCAGTCAACGTAGATAAGGCTTTTCAGACTATACTAACCGAGATATACCATATCATAAGCAAGAAGGCGCTGGCTGCACAAGCAGCAGCCACAACCACTACTCTTCCTGGTCAGGGTACAACCATCAATGTTAATGACACCTCTGATAATGTGAAGAGAGGCTGCTGTTCTACCTGAGTTAAAAAAGTTTGAACAAGGAAACGAGATTCGGTATATTTAAATTTTTTTGGTTTATTTTACATTATTCATCAGAGCAAGAGATGTAGATTACTTTCTTGATTATACAAGAGAAAGGGCTTGTGA</genome_strand>
        <mrna_strand>CGCGAAATGAGTTCTGTTTGGAGTCAAAATCTACTATTGGAGTTGAGTTCGCCACTAGAACTCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGGAAAGACAGTCAAGGCCCAAATATGGGACACTGCAGGCCAAGAACGGTACCGAGCCATTACCAGTGCTTATTACAGAGGAGCAGTTGGTGCACTCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTCATTTCTTGAGACATCGGCATTGGAAGCAGTCAACGTAGATAAGGCTTTTCAGACTATACTAACCGAGATATACCATATCATAAGCAAGAAGGCGCTGGCTGCACAAGCAGCAGCCACAACCACTACTCTTCCTGGTCAGGGTACAACCATCAATGTTAATGACACCTCTGATAATGTGAAGAGAGGCTGCTGTTCTACCTGAGTTAAAAAAGTTTGAACAAGGAAACGAGATTCGGTATATTTAAATTTTTTTGGTTTATTTTACATTATTCATCAGAGCAAGAGATGTAGATTACTTTCTTGATTATACAAGAGAAAGGGCTTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314828" ref_strand="+" ref_description="SGN-E314828 [cTOA-20-D14]">
      <seq>tttctctcacctcccaggttttaatacagagaattgaagttatggggaatagagtggatcatgagtacgattacttgtttaagatcgtgttgattggtgattctggagttggaaaatcgaacattctgtctaggtttacgcgaaatgagttctgtttggagtcaaaatctactattggagttgagttcgccactagaactcttcaggttgagggaaagacagtcaaggcccaaatatgggacactgcaggccaagaacggtaccgagccattaccagtgcttattacagaggagcagttggtgcactccttgtttatgacataacaaagggacaaacattcgacaatgttcaaaggtggctccgagaattgagagaccatgcagattctaacattgtcattatgatggctggaaacaagtccgaccttaaccaccttcgagcagtctctgagcaggatggtcaaaatttagctgagaaggaaggactgtcatttcttgagacatcggcattggaagcagtcaacgtagataaggcttttcagactatactaaccgagatataccatatcataagcaagaaggcgctggctgcacaagcagcagccacaaccactactcttcctggtcagggtacnaccatcaatgttaatgacacctctgataatgtgaagagaggctgctgttctacctgagttaaaaagtttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69369" stop="66556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69067" g_stop="68879" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="206" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68878" i_stop="67358" i_length="1521">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67357" g_stop="66856" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="707" r_length="501" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E314828" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69067" e_stop="68879"/>
          <exon e_start="67357" e_stop="66856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTAATACAGAGAATTGAAGTTATGGGGAATAGAGTGGATCATGAGTACGATTACTTGTTTAAGATCGTGTTGATTGGTGATTCTGGAGTTGGAAAATCGAACATTCTGTCTAGGTTTACGCGAAATGAGTTCTGTTTGGAGTCAAAATCTACTATTGGAGTTGAGTTCGCCACTAGAACTCTTCAGGTTAGTACTGATATCACTTTGTTCTAAGTTTAATTTGAAATTTGGTATTGTTTGAGCTCTTAATGTAGTAGTGGTGTTGTATAAGTTCATACCGAAAATTTTTACTCCTGAAAATTGGGGGTAGGGAATCGAACAGTCAGTAACAAGTTGAAAGTTCAGATTGCTATTAACATTCCATGAAAATTGATACTCCTGTTGTGAACTGCTTGACACTTTTCATATCTCGAGATTTAAACTAAAGTAAAGATTATTAACAATATTTTAGGAATGTAATCTGTATCATTTTTTATATGAGGGGAATTGTTTCATGTAGTTTCTATTTTAGGATAAATCTGATTTTTTATTTAAAAGAATAAATTTCGCTTGTTTTTCCTCCATATATAGTCAAATTGACTCTACAAAAGTGTAAAAAAAATGGAGATGGAGGGAATCATACTATCATCTATAGCCTAGTGGAATGTTGATTATTTTATGTGATTTTGTTGAATTTTTTGTGATTATTGATGAGAATAGTGTAGAGATTGGTGGAGTGGTAAAGCCGGTGTATTTTTAGCATCTCCGGTATTCGAGTTGCCGGTTAAATGGATGACTAAAATTTAGGTGGATCAGTTGATGATTGCCCTTTTCTTCCTCTGGTCTGATACAATTCTGGCTAAATGACCATTTTTTATTTTTAAGTTCTAAGGACAAATCAATATATTATAGCATAAACATCAGGTACTGTGAACTCATGAAATCTGTTTCTTCCTCTTTTCAGTAGCCTACAATATTTAGTTGTATTTTCAAGTATGAACAAGATACTAGCACATAGATGCAGTCATGCAGCTGCAACATTCTGTATATATATTCTTGTTTGGAATGAAGTAGTTCAATGATTGTCATGTGTAATGTTAGCAATGAATTTTTTTGAGTTTTGATCTATCTGTACTTCCACTAATGTGCTTTTAAGAAAAAATGTTGATCCGCTTATTGTATGCCTCGGTTTTCTTACTATCCTGCTGTTTTTACGTCTTATATCTCCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCGAGGGTTTATCCGAAACAGTTTCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGTATACTTTCCTCCCCATACCCCACTTATGGGACTATACTAAGAATGTAGTTGTTGGTCTTCTTATGACCTGGAATTTCCGCTTTTAATTGTTATATGTTGGCTCAATCTGATGCTTCTACGTTTTTTTTGTTCTGTTGAAATGAAATTATTGGATGGCAGGACTGGTTGTCTATCTGTAATTTGAATTTGAGTATTTTAATGGTGCTTATGTCCTTTGAGGAAAACCAAATGCTCTGAAATTCTCAACTTTTAAAACTCTTTAAGCTTGGGTGAACCAGGTGTTTGCTTTCTGCTAGCCACAATATCCAATTCCATTTGATAAATTTGCTTTTTCTTTGGCGGGTAAACGTGGCTGAAATGGAATTTATTGTACTGATATCAACACTCATGGGCTATCTACTTCATGATACAGGTTGAGGGAAAGACAGTCAAGGCCCAAATATGGGACACTGCAGGCCAAGAACGGTACCGAGCCATTACCAGTGCTTATTACAGAGGAGCAGTTGGTGCACTCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTCATTTCTTGAGACATCGGCATTGGAAGCAGTCAACGTAGATAAGGCTTTTCAGACTATACTAACCGAGATATACCATATCATAAGCAAGAAGGCGCTGGCTGCACAAGCAGCAGCCACAACCACTACTCTTCCTGGTCAGGGTACAACCATCAATGTTAATGACACCTCTGATAATGTGAAGAGAGGCTGCTGTTCTACCTGAGTTAAAAAAGTTTGAA</genome_strand>
        <mrna_strand>GTTTTAATACAGAGAATTGAAGTTATGGGGAATAGAGTGGATCATGAGTACGATTACTTGTTTAAGATCGTGTTGATTGGTGATTCTGGAGTTGGAAAATCGAACATTCTGTCTAGGTTTACGCGAAATGAGTTCTGTTTGGAGTCAAAATCTACTATTGGAGTTGAGTTCGCCACTAGAACTCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGGAAAGACAGTCAAGGCCCAAATATGGGACACTGCAGGCCAAGAACGGTACCGAGCCATTACCAGTGCTTATTACAGAGGAGCAGTTGGTGCACTCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTCATTTCTTGAGACATCGGCATTGGAAGCAGTCAACGTAGATAAGGCTTTTCAGACTATACTAACCGAGATATACCATATCATAAGCAAGAAGGCGCTGGCTGCACAAGCAGCAGCCACAACCACTACTCTTCCTGGTCAGGGTACNACCATCAATGTTAATGACACCTCTGATAATGTGAAGAGAGGCTGCTGTTCTACCTGAGTT-AAAAAGTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343936" ref_strand="+" ref_description="SGN-E343936 [cTOF-12-C11]">
      <seq>tttctaaagctttctctcacctcccaggttttaatacagagaattgaagttatggggaatagagtggatcatgagtacgattacttgtttaagatcgtgttgattggtgattctggagttggaaaatcgaacattctgtctaggtttacgcgaaatgagttctgtttggagtcaaaatctactattggagttgagttcgccactagaactcttcaggttgagggaaagacagtcaaggcccaaatatgggacactgcaggccaagaacggtaccgagccattaccagtgcttattacagaggagcagttggtgcactccttgtttatgacataacaaagggacaaacattcgacaatgttcaaaggtggctccgagaattgagagaccatgcagattctaacattgtcattatgatggctggaaacaagtccgaccttaaccaccttcgagcagtctctgagcaggatggtcaaaatttagctgagaaggaaggactgtcatttcttgagacatcggcattggaagcagtcaacgtagataaggcttttcagactatactaaccgagatataccatatcataagcaagaaggcgctggctgcacaagcagcagccacaaccactactcttcctggtcagggtacaaccatcaatgttaatgacacctctngatatgtgaagagaggctgctgttctaccctgagtaaaaaagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69737" stop="66558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69437" g_stop="69411" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69410" i_stop="69068" i_length="343">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69067" g_stop="68879" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="216" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68878" i_stop="67358" i_length="1521">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67357" g_stop="66858" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="716" r_length="500" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E343936" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69437" e_stop="69411"/>
          <exon e_start="69067" e_stop="68879"/>
          <exon e_start="67357" e_stop="66858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTAAAGCTTTCTCTCACCTCCCAGGTAACCCATTTTGTACTAATTTGAGCATCAATCTATTTTTGTATGTATGCGTATGAATTGTTTTTGTATATATATACCGTGGCGGATCCAGGATTTTAACTTTATAAGTTCAATTTTTAAAGTTTTTAGCATTGAACTCGTTATAATTTTTGAAGTTAAAGAGTTTGTAACTGCTATTTATTGTGAATTTATGTTTAAATCAGTGTATTCAAATGAACCCGTACATCCGCTCTTGGAGAGTATTTTTTATTTGTATTTTCCATTTCTAGGGTTTGTTTGTGTTTGATTTGATTGGAGTGTTGCAGATCTAGATGATGTTTATCTGTTTTTTGATTTTTTGTAGGTTTTAATACAGAGAATTGAAGTTATGGGGAATAGAGTGGATCATGAGTACGATTACTTGTTTAAGATCGTGTTGATTGGTGATTCTGGAGTTGGAAAATCGAACATTCTGTCTAGGTTTACGCGAAATGAGTTCTGTTTGGAGTCAAAATCTACTATTGGAGTTGAGTTCGCCACTAGAACTCTTCAGGTTAGTACTGATATCACTTTGTTCTAAGTTTAATTTGAAATTTGGTATTGTTTGAGCTCTTAATGTAGTAGTGGTGTTGTATAAGTTCATACCGAAAATTTTTACTCCTGAAAATTGGGGGTAGGGAATCGAACAGTCAGTAACAAGTTGAAAGTTCAGATTGCTATTAACATTCCATGAAAATTGATACTCCTGTTGTGAACTGCTTGACACTTTTCATATCTCGAGATTTAAACTAAAGTAAAGATTATTAACAATATTTTAGGAATGTAATCTGTATCATTTTTTATATGAGGGGAATTGTTTCATGTAGTTTCTATTTTAGGATAAATCTGATTTTTTATTTAAAAGAATAAATTTCGCTTGTTTTTCCTCCATATATAGTCAAATTGACTCTACAAAAGTGTAAAAAAAATGGAGATGGAGGGAATCATACTATCATCTATAGCCTAGTGGAATGTTGATTATTTTATGTGATTTTGTTGAATTTTTTGTGATTATTGATGAGAATAGTGTAGAGATTGGTGGAGTGGTAAAGCCGGTGTATTTTTAGCATCTCCGGTATTCGAGTTGCCGGTTAAATGGATGACTAAAATTTAGGTGGATCAGTTGATGATTGCCCTTTTCTTCCTCTGGTCTGATACAATTCTGGCTAAATGACCATTTTTTATTTTTAAGTTCTAAGGACAAATCAATATATTATAGCATAAACATCAGGTACTGTGAACTCATGAAATCTGTTTCTTCCTCTTTTCAGTAGCCTACAATATTTAGTTGTATTTTCAAGTATGAACAAGATACTAGCACATAGATGCAGTCATGCAGCTGCAACATTCTGTATATATATTCTTGTTTGGAATGAAGTAGTTCAATGATTGTCATGTGTAATGTTAGCAATGAATTTTTTTGAGTTTTGATCTATCTGTACTTCCACTAATGTGCTTTTAAGAAAAAATGTTGATCCGCTTATTGTATGCCTCGGTTTTCTTACTATCCTGCTGTTTTTACGTCTTATATCTCCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCGAGGGTTTATCCGAAACAGTTTCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGTATACTTTCCTCCCCATACCCCACTTATGGGACTATACTAAGAATGTAGTTGTTGGTCTTCTTATGACCTGGAATTTCCGCTTTTAATTGTTATATGTTGGCTCAATCTGATGCTTCTACGTTTTTTTTGTTCTGTTGAAATGAAATTATTGGATGGCAGGACTGGTTGTCTATCTGTAATTTGAATTTGAGTATTTTAATGGTGCTTATGTCCTTTGAGGAAAACCAAATGCTCTGAAATTCTCAACTTTTAAAACTCTTTAAGCTTGGGTGAACCAGGTGTTTGCTTTCTGCTAGCCACAATATCCAATTCCATTTGATAAATTTGCTTTTTCTTTGGCGGGTAAACGTGGCTGAAATGGAATTTATTGTACTGATATCAACACTCATGGGCTATCTACTTCATGATACAGGTTGAGGGAAAGACAGTCAAGGCCCAAATATGGGACACTGCAGGCCAAGAACGGTACCGAGCCATTACCAGTGCTTATTACAGAGGAGCAGTTGGTGCACTCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTCATTTCTTGAGACATCGGCATTGGAAGCAGTCAACGTAGATAAGGCTTTTCAGACTATACTAACCGAGATATACCATATCATAAGCAAGAAGGCGCTGGCTGCACAAGCAGCAGCCACAACCACTACTCTTCCTGGTCAGGGTACAACCATCAATGTTAATGACACCTCTGATAATGTGAAGAGAGGCTGCTGTTCTA-CCTGAGTTAAAAAAGTTTG</genome_strand>
        <mrna_strand>TTTCTAAAGCTTTCTCTCACCTCCCAG.......................................................................................................................................................................................................................................................................................................................................................GTTTTAATACAGAGAATTGAAGTTATGGGGAATAGAGTGGATCATGAGTACGATTACTTGTTTAAGATCGTGTTGATTGGTGATTCTGGAGTTGGAAAATCGAACATTCTGTCTAGGTTTACGCGAAATGAGTTCTGTTTGGAGTCAAAATCTACTATTGGAGTTGAGTTCGCCACTAGAACTCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGGAAAGACAGTCAAGGCCCAAATATGGGACACTGCAGGCCAAGAACGGTACCGAGCCATTACCAGTGCTTATTACAGAGGAGCAGTTGGTGCACTCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTCATTTCTTGAGACATCGGCATTGGAAGCAGTCAACGTAGATAAGGCTTTTCAGACTATACTAACCGAGATATACCATATCATAAGCAAGAAGGCGCTGGCTGCACAAGCAGCAGCCACAACCACTACTCTTCCTGGTCAGGGTACAACCATCAATGTTAATGACACCTCTNGATATGTGAAGAGAGGCTGCTGTTCTACCCTGAG-TAAAAAAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339352" ref_strand="+" ref_description="SGN-E339352 [cTOF-4-A5]">
      <seq>tttctaaagctttctctcacctcccaggttttaatacagagaattgaagttatggggaatagagtggatcatgagtacgattacttgtttaagatcgtgttgattggtgattctggagttggaaaatcgaacattctgtctaggtttacgcgaaatgagttctgtttggagtcaaaatctactattggagttgagttcgccactagaactcttcaggttgagggaaagacagtcaaggcccaaatatgggacactgcaggccaagaacggtaccgagccattaccagtgcttattacagaggagcagttggtgcactccttgtttatgacataacaaagggacaaacattcgacaatgttcaaaggtggctccgagaattgagagaccatgcagattctaacattgtcattatgatggctggaaacaagtccgaccttaaccaccttcgagcagtctctgagcaggatggtcaaaatttagctgagaaggaaggactgtcatttcttgagacatcggcattggaagcagtcaacgtagataaggcttttcagactatactaaccgagatataccatatcataagcaagaaagcgctggctgcacaagcagcagccacaaccactactcttcctggtcagggtacaaccatcaatgtttatgacacctctgataatgtgaagagaagctgctgttctacctgagttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69737" stop="66564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69437" g_stop="69411" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69410" i_stop="69068" i_length="343">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69067" g_stop="68879" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="216" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68878" i_stop="67358" i_length="1521">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67357" g_stop="66864" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="710" r_length="494" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E339352" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69437" e_stop="69411"/>
          <exon e_start="69067" e_stop="68879"/>
          <exon e_start="67357" e_stop="66864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTAAAGCTTTCTCTCACCTCCCAGGTAACCCATTTTGTACTAATTTGAGCATCAATCTATTTTTGTATGTATGCGTATGAATTGTTTTTGTATATATATACCGTGGCGGATCCAGGATTTTAACTTTATAAGTTCAATTTTTAAAGTTTTTAGCATTGAACTCGTTATAATTTTTGAAGTTAAAGAGTTTGTAACTGCTATTTATTGTGAATTTATGTTTAAATCAGTGTATTCAAATGAACCCGTACATCCGCTCTTGGAGAGTATTTTTTATTTGTATTTTCCATTTCTAGGGTTTGTTTGTGTTTGATTTGATTGGAGTGTTGCAGATCTAGATGATGTTTATCTGTTTTTTGATTTTTTGTAGGTTTTAATACAGAGAATTGAAGTTATGGGGAATAGAGTGGATCATGAGTACGATTACTTGTTTAAGATCGTGTTGATTGGTGATTCTGGAGTTGGAAAATCGAACATTCTGTCTAGGTTTACGCGAAATGAGTTCTGTTTGGAGTCAAAATCTACTATTGGAGTTGAGTTCGCCACTAGAACTCTTCAGGTTAGTACTGATATCACTTTGTTCTAAGTTTAATTTGAAATTTGGTATTGTTTGAGCTCTTAATGTAGTAGTGGTGTTGTATAAGTTCATACCGAAAATTTTTACTCCTGAAAATTGGGGGTAGGGAATCGAACAGTCAGTAACAAGTTGAAAGTTCAGATTGCTATTAACATTCCATGAAAATTGATACTCCTGTTGTGAACTGCTTGACACTTTTCATATCTCGAGATTTAAACTAAAGTAAAGATTATTAACAATATTTTAGGAATGTAATCTGTATCATTTTTTATATGAGGGGAATTGTTTCATGTAGTTTCTATTTTAGGATAAATCTGATTTTTTATTTAAAAGAATAAATTTCGCTTGTTTTTCCTCCATATATAGTCAAATTGACTCTACAAAAGTGTAAAAAAAATGGAGATGGAGGGAATCATACTATCATCTATAGCCTAGTGGAATGTTGATTATTTTATGTGATTTTGTTGAATTTTTTGTGATTATTGATGAGAATAGTGTAGAGATTGGTGGAGTGGTAAAGCCGGTGTATTTTTAGCATCTCCGGTATTCGAGTTGCCGGTTAAATGGATGACTAAAATTTAGGTGGATCAGTTGATGATTGCCCTTTTCTTCCTCTGGTCTGATACAATTCTGGCTAAATGACCATTTTTTATTTTTAAGTTCTAAGGACAAATCAATATATTATAGCATAAACATCAGGTACTGTGAACTCATGAAATCTGTTTCTTCCTCTTTTCAGTAGCCTACAATATTTAGTTGTATTTTCAAGTATGAACAAGATACTAGCACATAGATGCAGTCATGCAGCTGCAACATTCTGTATATATATTCTTGTTTGGAATGAAGTAGTTCAATGATTGTCATGTGTAATGTTAGCAATGAATTTTTTTGAGTTTTGATCTATCTGTACTTCCACTAATGTGCTTTTAAGAAAAAATGTTGATCCGCTTATTGTATGCCTCGGTTTTCTTACTATCCTGCTGTTTTTACGTCTTATATCTCCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCGAGGGTTTATCCGAAACAGTTTCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGTATACTTTCCTCCCCATACCCCACTTATGGGACTATACTAAGAATGTAGTTGTTGGTCTTCTTATGACCTGGAATTTCCGCTTTTAATTGTTATATGTTGGCTCAATCTGATGCTTCTACGTTTTTTTTGTTCTGTTGAAATGAAATTATTGGATGGCAGGACTGGTTGTCTATCTGTAATTTGAATTTGAGTATTTTAATGGTGCTTATGTCCTTTGAGGAAAACCAAATGCTCTGAAATTCTCAACTTTTAAAACTCTTTAAGCTTGGGTGAACCAGGTGTTTGCTTTCTGCTAGCCACAATATCCAATTCCATTTGATAAATTTGCTTTTTCTTTGGCGGGTAAACGTGGCTGAAATGGAATTTATTGTACTGATATCAACACTCATGGGCTATCTACTTCATGATACAGGTTGAGGGAAAGACAGTCAAGGCCCAAATATGGGACACTGCAGGCCAAGAACGGTACCGAGCCATTACCAGTGCTTATTACAGAGGAGCAGTTGGTGCACTCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTCATTTCTTGAGACATCGGCATTGGAAGCAGTCAACGTAGATAAGGCTTTTCAGACTATACTAACCGAGATATACCATATCATAAGCAAGAAGGCGCTGGCTGCACAAGCAGCAGCCACAACCACTACTCTTCCTGGTCAGGGTACAACCATCAATGTTAATGACACCTCTGATAATGTGAAGAGAGGCTGCTGTTCTACCTGAGTTAAAAA</genome_strand>
        <mrna_strand>TTTCTAAAGCTTTCTCTCACCTCCCAG.......................................................................................................................................................................................................................................................................................................................................................GTTTTAATACAGAGAATTGAAGTTATGGGGAATAGAGTGGATCATGAGTACGATTACTTGTTTAAGATCGTGTTGATTGGTGATTCTGGAGTTGGAAAATCGAACATTCTGTCTAGGTTTACGCGAAATGAGTTCTGTTTGGAGTCAAAATCTACTATTGGAGTTGAGTTCGCCACTAGAACTCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGGAAAGACAGTCAAGGCCCAAATATGGGACACTGCAGGCCAAGAACGGTACCGAGCCATTACCAGTGCTTATTACAGAGGAGCAGTTGGTGCACTCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTCATTTCTTGAGACATCGGCATTGGAAGCAGTCAACGTAGATAAGGCTTTTCAGACTATACTAACCGAGATATACCATATCATAAGCAAGAAAGCGCTGGCTGCACAAGCAGCAGCCACAACCACTACTCTTCCTGGTCAGGGTACAACCATCAATGTTTATGACACCTCTGATAATGTGAAGAGAAGCTGCTGTTCTACCTGAGTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302944" ref_strand="+" ref_description="SGN-E302944 [cLEW-26-H15]">
      <seq>cactgcaggccaagaacggtaccgagccattaccagtgcttattacagaggagcagttggtgcactccttgtttatgacataacaaagggacaaacattcgacaatgttcaaaggtggctccgagaattgagagaccatgcagattctaacattgtcattatgatggctggaaacaagtccgaccttaaccaccttcgagcagtctctgagcaggatggtcaaaatttagctgagaaggaaggactgtcatttcttgagacatcggcattggaagcagtcaacgtagataaggcttttcagactatactaaccgagatataccatatcataagcaagaaggcgctggctgcacaagcagcagccacaaccactactcttcctggtcagggtacaaccatcaatgttaatgacacctctgataatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67622" stop="66595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67322" g_stop="66895" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E302944" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67322" e_stop="66895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGCAGGCCAAGAACGGTACCGAGCCATTACCAGTGCTTATTACAGAGGAGCAGTTGGTGCACTCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTCATTTCTTGAGACATCGGCATTGGAAGCAGTCAACGTAGATAAGGCTTTTCAGACTATACTAACCGAGATATACCATATCATAAGCAAGAAGGCGCTGGCTGCACAAGCAGCAGCCACAACCACTACTCTTCCTGGTCAGGGTACAACCATCAATGTTAATGACACCTCTGATAATGTGA</genome_strand>
        <mrna_strand>CACTGCAGGCCAAGAACGGTACCGAGCCATTACCAGTGCTTATTACAGAGGAGCAGTTGGTGCACTCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTCATTTCTTGAGACATCGGCATTGGAAGCAGTCAACGTAGATAAGGCTTTTCAGACTATACTAACCGAGATATACCATATCATAAGCAAGAAGGCGCTGGCTGCACAAGCAGCAGCCACAACCACTACTCTTCCTGGTCAGGGTACAACCATCAATGTTAATGACACCTCTGATAATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710663" ref_strand="+" ref_description="SGN-E710663 [FA56AF03]">
      <seq>atagaaaaaactcttctccaacatttcgaacctccattgtttctctttctaaagctttctctcacctcccaggttttaatacagagaattgaagttatggggaatagagtggatcatgagtacgattacttgtttaagatcgtgttgattggtgattctggagttggaaaatcgaacattctgtctaggtttacgcgaaatgagttctgtttggagtcaaaatctactattggagttgagttcgccactagaactcttcaggttgagggaaagacagtcaaggcccaaatatgggacactgcaggccaagaacggtaccgagccattaccagtgcttattacagaggagcagttggtgcactccttgtttatgacataacaaagggacaaacattcgacaatgttcaaaggtggctccgagaattgagagaccatgcagattctaacattgtcattatgatggctggaaacaagtccgaccttaaccaccttcgagcagtctctgagcaggatggtcaaaatttagctgagaaggaaggactgtcatttcttgagacatcggcattggaagcagtcaacgtagataaggcttttcagactatactaaccgagatataccatatcataagcaagaaggcgctggctgcacaagcagcagccaccaccactactcttcctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69782" stop="66638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69482" g_stop="69411" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69410" i_stop="69068" i_length="343">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69067" g_stop="68879" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="261" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68878" i_stop="67358" i_length="1521">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67357" g_stop="66938" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="681" r_length="420" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E710663" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69482" e_stop="69411"/>
          <exon e_start="69067" e_stop="68879"/>
          <exon e_start="67357" e_stop="66938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAAAAAACTCTTCTCCAACATTTCGAAACTCCATTGTTTCTCTTTCTAAAGCTTTCTCTCACCTCCCAGGTAACCCATTTTGTACTAATTTGAGCATCAATCTATTTTTGTATGTATGCGTATGAATTGTTTTTGTATATATATACCGTGGCGGATCCAGGATTTTAACTTTATAAGTTCAATTTTTAAAGTTTTTAGCATTGAACTCGTTATAATTTTTGAAGTTAAAGAGTTTGTAACTGCTATTTATTGTGAATTTATGTTTAAATCAGTGTATTCAAATGAACCCGTACATCCGCTCTTGGAGAGTATTTTTTATTTGTATTTTCCATTTCTAGGGTTTGTTTGTGTTTGATTTGATTGGAGTGTTGCAGATCTAGATGATGTTTATCTGTTTTTTGATTTTTTGTAGGTTTTAATACAGAGAATTGAAGTTATGGGGAATAGAGTGGATCATGAGTACGATTACTTGTTTAAGATCGTGTTGATTGGTGATTCTGGAGTTGGAAAATCGAACATTCTGTCTAGGTTTACGCGAAATGAGTTCTGTTTGGAGTCAAAATCTACTATTGGAGTTGAGTTCGCCACTAGAACTCTTCAGGTTAGTACTGATATCACTTTGTTCTAAGTTTAATTTGAAATTTGGTATTGTTTGAGCTCTTAATGTAGTAGTGGTGTTGTATAAGTTCATACCGAAAATTTTTACTCCTGAAAATTGGGGGTAGGGAATCGAACAGTCAGTAACAAGTTGAAAGTTCAGATTGCTATTAACATTCCATGAAAATTGATACTCCTGTTGTGAACTGCTTGACACTTTTCATATCTCGAGATTTAAACTAAAGTAAAGATTATTAACAATATTTTAGGAATGTAATCTGTATCATTTTTTATATGAGGGGAATTGTTTCATGTAGTTTCTATTTTAGGATAAATCTGATTTTTTATTTAAAAGAATAAATTTCGCTTGTTTTTCCTCCATATATAGTCAAATTGACTCTACAAAAGTGTAAAAAAAATGGAGATGGAGGGAATCATACTATCATCTATAGCCTAGTGGAATGTTGATTATTTTATGTGATTTTGTTGAATTTTTTGTGATTATTGATGAGAATAGTGTAGAGATTGGTGGAGTGGTAAAGCCGGTGTATTTTTAGCATCTCCGGTATTCGAGTTGCCGGTTAAATGGATGACTAAAATTTAGGTGGATCAGTTGATGATTGCCCTTTTCTTCCTCTGGTCTGATACAATTCTGGCTAAATGACCATTTTTTATTTTTAAGTTCTAAGGACAAATCAATATATTATAGCATAAACATCAGGTACTGTGAACTCATGAAATCTGTTTCTTCCTCTTTTCAGTAGCCTACAATATTTAGTTGTATTTTCAAGTATGAACAAGATACTAGCACATAGATGCAGTCATGCAGCTGCAACATTCTGTATATATATTCTTGTTTGGAATGAAGTAGTTCAATGATTGTCATGTGTAATGTTAGCAATGAATTTTTTTGAGTTTTGATCTATCTGTACTTCCACTAATGTGCTTTTAAGAAAAAATGTTGATCCGCTTATTGTATGCCTCGGTTTTCTTACTATCCTGCTGTTTTTACGTCTTATATCTCCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCGAGGGTTTATCCGAAACAGTTTCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGTATACTTTCCTCCCCATACCCCACTTATGGGACTATACTAAGAATGTAGTTGTTGGTCTTCTTATGACCTGGAATTTCCGCTTTTAATTGTTATATGTTGGCTCAATCTGATGCTTCTACGTTTTTTTTGTTCTGTTGAAATGAAATTATTGGATGGCAGGACTGGTTGTCTATCTGTAATTTGAATTTGAGTATTTTAATGGTGCTTATGTCCTTTGAGGAAAACCAAATGCTCTGAAATTCTCAACTTTTAAAACTCTTTAAGCTTGGGTGAACCAGGTGTTTGCTTTCTGCTAGCCACAATATCCAATTCCATTTGATAAATTTGCTTTTTCTTTGGCGGGTAAACGTGGCTGAAATGGAATTTATTGTACTGATATCAACACTCATGGGCTATCTACTTCATGATACAGGTTGAGGGAAAGACAGTCAAGGCCCAAATATGGGACACTGCAGGCCAAGAACGGTACCGAGCCATTACCAGTGCTTATTACAGAGGAGCAGTTGGTGCACTCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTCATTTCTTGAGACATCGGCATTGGAAGCAGTCAACGTAGATAAGGCTTTTCAGACTATACTAACCGAGATATACCATATCATAAGCAAGAAGGCGCTGGCTGCACAAGCAGCAGCCACAACCACTACTCTTCCTGGT</genome_strand>
        <mrna_strand>ATAGAAAAAACTCTTCTCCAACATTTCGAACCTCCATTGTTTCTCTTTCTAAAGCTTTCTCTCACCTCCCAG.......................................................................................................................................................................................................................................................................................................................................................GTTTTAATACAGAGAATTGAAGTTATGGGGAATAGAGTGGATCATGAGTACGATTACTTGTTTAAGATCGTGTTGATTGGTGATTCTGGAGTTGGAAAATCGAACATTCTGTCTAGGTTTACGCGAAATGAGTTCTGTTTGGAGTCAAAATCTACTATTGGAGTTGAGTTCGCCACTAGAACTCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGGAAAGACAGTCAAGGCCCAAATATGGGACACTGCAGGCCAAGAACGGTACCGAGCCATTACCAGTGCTTATTACAGAGGAGCAGTTGGTGCACTCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTCATTTCTTGAGACATCGGCATTGGAAGCAGTCAACGTAGATAAGGCTTTTCAGACTATACTAACCGAGATATACCATATCATAAGCAAGAAGGCGCTGGCTGCACAAGCAGCAGCCACCACCACTACTCTTCCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345619" ref_strand="+" ref_description="SGN-E345619 [cTOF-18-A22]">
      <seq>accaaaaatcttatatagaaaaaactcttctccaacatttcgaaactccattgtttctctttctaaagctttctctcacctcccaggttttaatacagagaattgaagttatggggaatagagtggatcatgagtacgattacttgtttaagatcgtgttgattggtgattctggagttggaaaatcgaacattctgtctaggtttacgcgaaatgagttctgtttggagtcaaaatctactattggagttgagttcgccactagaactcttcaggttgagggaaagacagtcaaggcccaaatatgggacactgcaggccaagaacggtaccgagccattaccagtgcttattacagaggagcagttggtgcactccttgtttatgacataacaaagggacaaacattcgacaatgttcaaaggtggctccgagaattgagagaccatgcagattctaacattgtcattatgatggctggaaacaagtccgaccttaaccaccttcgagcagtctctgagcaggatggtcaaaatttagctgagaaggaaggactgtcatttcttgagacatcggcattggaagcagtcaacgtagataaggcttttcagactatactaaccgagatataccatatcataagcaagaaggcgctggctgcacaagcagcagccacaaccactactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69796" stop="66646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69496" g_stop="69411" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69410" i_stop="69068" i_length="343">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69067" g_stop="68879" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="275" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68878" i_stop="67358" i_length="1521">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67357" g_stop="66946" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="687" r_length="412" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E345619" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69496" e_stop="69411"/>
          <exon e_start="69067" e_stop="68879"/>
          <exon e_start="67357" e_stop="66946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAAATCTTATATAGAAAAAACTCTTCTCCAACATTTCGAAACTCCATTGTTTCTCTTTCTAAAGCTTTCTCTCACCTCCCAGGTAACCCATTTTGTACTAATTTGAGCATCAATCTATTTTTGTATGTATGCGTATGAATTGTTTTTGTATATATATACCGTGGCGGATCCAGGATTTTAACTTTATAAGTTCAATTTTTAAAGTTTTTAGCATTGAACTCGTTATAATTTTTGAAGTTAAAGAGTTTGTAACTGCTATTTATTGTGAATTTATGTTTAAATCAGTGTATTCAAATGAACCCGTACATCCGCTCTTGGAGAGTATTTTTTATTTGTATTTTCCATTTCTAGGGTTTGTTTGTGTTTGATTTGATTGGAGTGTTGCAGATCTAGATGATGTTTATCTGTTTTTTGATTTTTTGTAGGTTTTAATACAGAGAATTGAAGTTATGGGGAATAGAGTGGATCATGAGTACGATTACTTGTTTAAGATCGTGTTGATTGGTGATTCTGGAGTTGGAAAATCGAACATTCTGTCTAGGTTTACGCGAAATGAGTTCTGTTTGGAGTCAAAATCTACTATTGGAGTTGAGTTCGCCACTAGAACTCTTCAGGTTAGTACTGATATCACTTTGTTCTAAGTTTAATTTGAAATTTGGTATTGTTTGAGCTCTTAATGTAGTAGTGGTGTTGTATAAGTTCATACCGAAAATTTTTACTCCTGAAAATTGGGGGTAGGGAATCGAACAGTCAGTAACAAGTTGAAAGTTCAGATTGCTATTAACATTCCATGAAAATTGATACTCCTGTTGTGAACTGCTTGACACTTTTCATATCTCGAGATTTAAACTAAAGTAAAGATTATTAACAATATTTTAGGAATGTAATCTGTATCATTTTTTATATGAGGGGAATTGTTTCATGTAGTTTCTATTTTAGGATAAATCTGATTTTTTATTTAAAAGAATAAATTTCGCTTGTTTTTCCTCCATATATAGTCAAATTGACTCTACAAAAGTGTAAAAAAAATGGAGATGGAGGGAATCATACTATCATCTATAGCCTAGTGGAATGTTGATTATTTTATGTGATTTTGTTGAATTTTTTGTGATTATTGATGAGAATAGTGTAGAGATTGGTGGAGTGGTAAAGCCGGTGTATTTTTAGCATCTCCGGTATTCGAGTTGCCGGTTAAATGGATGACTAAAATTTAGGTGGATCAGTTGATGATTGCCCTTTTCTTCCTCTGGTCTGATACAATTCTGGCTAAATGACCATTTTTTATTTTTAAGTTCTAAGGACAAATCAATATATTATAGCATAAACATCAGGTACTGTGAACTCATGAAATCTGTTTCTTCCTCTTTTCAGTAGCCTACAATATTTAGTTGTATTTTCAAGTATGAACAAGATACTAGCACATAGATGCAGTCATGCAGCTGCAACATTCTGTATATATATTCTTGTTTGGAATGAAGTAGTTCAATGATTGTCATGTGTAATGTTAGCAATGAATTTTTTTGAGTTTTGATCTATCTGTACTTCCACTAATGTGCTTTTAAGAAAAAATGTTGATCCGCTTATTGTATGCCTCGGTTTTCTTACTATCCTGCTGTTTTTACGTCTTATATCTCCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCGAGGGTTTATCCGAAACAGTTTCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGTATACTTTCCTCCCCATACCCCACTTATGGGACTATACTAAGAATGTAGTTGTTGGTCTTCTTATGACCTGGAATTTCCGCTTTTAATTGTTATATGTTGGCTCAATCTGATGCTTCTACGTTTTTTTTGTTCTGTTGAAATGAAATTATTGGATGGCAGGACTGGTTGTCTATCTGTAATTTGAATTTGAGTATTTTAATGGTGCTTATGTCCTTTGAGGAAAACCAAATGCTCTGAAATTCTCAACTTTTAAAACTCTTTAAGCTTGGGTGAACCAGGTGTTTGCTTTCTGCTAGCCACAATATCCAATTCCATTTGATAAATTTGCTTTTTCTTTGGCGGGTAAACGTGGCTGAAATGGAATTTATTGTACTGATATCAACACTCATGGGCTATCTACTTCATGATACAGGTTGAGGGAAAGACAGTCAAGGCCCAAATATGGGACACTGCAGGCCAAGAACGGTACCGAGCCATTACCAGTGCTTATTACAGAGGAGCAGTTGGTGCACTCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTCATTTCTTGAGACATCGGCATTGGAAGCAGTCAACGTAGATAAGGCTTTTCAGACTATACTAACCGAGATATACCATATCATAAGCAAGAAGGCGCTGGCTGCACAAGCAGCAGCCACAACCACTACTC</genome_strand>
        <mrna_strand>ACCAAAAATCTTATATAGAAAAAACTCTTCTCCAACATTTCGAAACTCCATTGTTTCTCTTTCTAAAGCTTTCTCTCACCTCCCAG.......................................................................................................................................................................................................................................................................................................................................................GTTTTAATACAGAGAATTGAAGTTATGGGGAATAGAGTGGATCATGAGTACGATTACTTGTTTAAGATCGTGTTGATTGGTGATTCTGGAGTTGGAAAATCGAACATTCTGTCTAGGTTTACGCGAAATGAGTTCTGTTTGGAGTCAAAATCTACTATTGGAGTTGAGTTCGCCACTAGAACTCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGGAAAGACAGTCAAGGCCCAAATATGGGACACTGCAGGCCAAGAACGGTACCGAGCCATTACCAGTGCTTATTACAGAGGAGCAGTTGGTGCACTCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTCATTTCTTGAGACATCGGCATTGGAAGCAGTCAACGTAGATAAGGCTTTTCAGACTATACTAACCGAGATATACCATATCATAAGCAAGAAGGCGCTGGCTGCACAAGCAGCAGCCACAACCACTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344249" ref_strand="+" ref_description="SGN-E344249 [cTOF-16-C3]">
      <seq>tttctaaagctttctctcacctcccaggttttaatacagagaattgaagttatggggaatagagtggatcatgagtacgattacttgtttaagatcgtgttgattggtgattctggagttggaaaatcgaacattctgtctaggtttacgcgaaatgagttctgtttggagtcaaaatctactattggagttgagttcgccactagaactcttcaggttgagggaaagacagtcaaggcccaaatatgggacactgcaggccaagaacggtaccgagccattaccagtgcttattacagaggagcagttggtgcactccttgtttatgacataacaaagggacaaacattcgacaatgttcaaaggtggctccgagaattgagagaccatgcagattctaacattgtcattatgatggctggaaacaagtccgaccttaaccaccttcgagcagtctctgagcaggatggtcaaaatttagctgagaaggaaggactgtgatttcttgagacatcgggattggaagcagtcaacgtagataaggctgtttagactatactaaccgagatataccatatgataagtaagaaggcgctggctgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69737" stop="66670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69437" g_stop="69411" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69410" i_stop="69068" i_length="343">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69067" g_stop="68879" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="216" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68878" i_stop="67358" i_length="1521">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67357" g_stop="66970" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="604" r_length="388" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E344249" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69437" e_stop="69411"/>
          <exon e_start="69067" e_stop="68879"/>
          <exon e_start="67357" e_stop="66970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTAAAGCTTTCTCTCACCTCCCAGGTAACCCATTTTGTACTAATTTGAGCATCAATCTATTTTTGTATGTATGCGTATGAATTGTTTTTGTATATATATACCGTGGCGGATCCAGGATTTTAACTTTATAAGTTCAATTTTTAAAGTTTTTAGCATTGAACTCGTTATAATTTTTGAAGTTAAAGAGTTTGTAACTGCTATTTATTGTGAATTTATGTTTAAATCAGTGTATTCAAATGAACCCGTACATCCGCTCTTGGAGAGTATTTTTTATTTGTATTTTCCATTTCTAGGGTTTGTTTGTGTTTGATTTGATTGGAGTGTTGCAGATCTAGATGATGTTTATCTGTTTTTTGATTTTTTGTAGGTTTTAATACAGAGAATTGAAGTTATGGGGAATAGAGTGGATCATGAGTACGATTACTTGTTTAAGATCGTGTTGATTGGTGATTCTGGAGTTGGAAAATCGAACATTCTGTCTAGGTTTACGCGAAATGAGTTCTGTTTGGAGTCAAAATCTACTATTGGAGTTGAGTTCGCCACTAGAACTCTTCAGGTTAGTACTGATATCACTTTGTTCTAAGTTTAATTTGAAATTTGGTATTGTTTGAGCTCTTAATGTAGTAGTGGTGTTGTATAAGTTCATACCGAAAATTTTTACTCCTGAAAATTGGGGGTAGGGAATCGAACAGTCAGTAACAAGTTGAAAGTTCAGATTGCTATTAACATTCCATGAAAATTGATACTCCTGTTGTGAACTGCTTGACACTTTTCATATCTCGAGATTTAAACTAAAGTAAAGATTATTAACAATATTTTAGGAATGTAATCTGTATCATTTTTTATATGAGGGGAATTGTTTCATGTAGTTTCTATTTTAGGATAAATCTGATTTTTTATTTAAAAGAATAAATTTCGCTTGTTTTTCCTCCATATATAGTCAAATTGACTCTACAAAAGTGTAAAAAAAATGGAGATGGAGGGAATCATACTATCATCTATAGCCTAGTGGAATGTTGATTATTTTATGTGATTTTGTTGAATTTTTTGTGATTATTGATGAGAATAGTGTAGAGATTGGTGGAGTGGTAAAGCCGGTGTATTTTTAGCATCTCCGGTATTCGAGTTGCCGGTTAAATGGATGACTAAAATTTAGGTGGATCAGTTGATGATTGCCCTTTTCTTCCTCTGGTCTGATACAATTCTGGCTAAATGACCATTTTTTATTTTTAAGTTCTAAGGACAAATCAATATATTATAGCATAAACATCAGGTACTGTGAACTCATGAAATCTGTTTCTTCCTCTTTTCAGTAGCCTACAATATTTAGTTGTATTTTCAAGTATGAACAAGATACTAGCACATAGATGCAGTCATGCAGCTGCAACATTCTGTATATATATTCTTGTTTGGAATGAAGTAGTTCAATGATTGTCATGTGTAATGTTAGCAATGAATTTTTTTGAGTTTTGATCTATCTGTACTTCCACTAATGTGCTTTTAAGAAAAAATGTTGATCCGCTTATTGTATGCCTCGGTTTTCTTACTATCCTGCTGTTTTTACGTCTTATATCTCCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCGAGGGTTTATCCGAAACAGTTTCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGTATACTTTCCTCCCCATACCCCACTTATGGGACTATACTAAGAATGTAGTTGTTGGTCTTCTTATGACCTGGAATTTCCGCTTTTAATTGTTATATGTTGGCTCAATCTGATGCTTCTACGTTTTTTTTGTTCTGTTGAAATGAAATTATTGGATGGCAGGACTGGTTGTCTATCTGTAATTTGAATTTGAGTATTTTAATGGTGCTTATGTCCTTTGAGGAAAACCAAATGCTCTGAAATTCTCAACTTTTAAAACTCTTTAAGCTTGGGTGAACCAGGTGTTTGCTTTCTGCTAGCCACAATATCCAATTCCATTTGATAAATTTGCTTTTTCTTTGGCGGGTAAACGTGGCTGAAATGGAATTTATTGTACTGATATCAACACTCATGGGCTATCTACTTCATGATACAGGTTGAGGGAAAGACAGTCAAGGCCCAAATATGGGACACTGCAGGCCAAGAACGGTACCGAGCCATTACCAGTGCTTATTACAGAGGAGCAGTTGGTGCACTCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTCATTTCTTGAGACATCGGCATTGGAAGCAGTCAACGTAGATAAGGCTTTTCAGACTATACTAACCGAGATATACCATATCATAAGCAAGAAGGCGCTGGCTGCAC</genome_strand>
        <mrna_strand>TTTCTAAAGCTTTCTCTCACCTCCCAG.......................................................................................................................................................................................................................................................................................................................................................GTTTTAATACAGAGAATTGAAGTTATGGGGAATAGAGTGGATCATGAGTACGATTACTTGTTTAAGATCGTGTTGATTGGTGATTCTGGAGTTGGAAAATCGAACATTCTGTCTAGGTTTACGCGAAATGAGTTCTGTTTGGAGTCAAAATCTACTATTGGAGTTGAGTTCGCCACTAGAACTCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGGAAAGACAGTCAAGGCCCAAATATGGGACACTGCAGGCCAAGAACGGTACCGAGCCATTACCAGTGCTTATTACAGAGGAGCAGTTGGTGCACTCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTGATTTCTTGAGACATCGGGATTGGAAGCAGTCAACGTAGATAAGGCTGTTTAGACTATACTAACCGAGATATACCATATGATAAGTAAGAAGGCGCTGGCTGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306020" ref_strand="+" ref_description="SGN-E306020 [cLEY-17-L12]">
      <seq>aagttatggggaatagagtggatcatgagtacgattacttgtttaagatcgtgttgattggtgattctggagttggaaaatcgaacattctgtctaggtttacgcgaaatgagttctgtttggagtcaaaatctactattggagttgagttcgccactagaactcttcaggttgagggaaagacagtcaaggcccaaatatgggacactgcaggccaagaacggtaccgagccattaccagtgcttattacagaggagcagttggtgcactccttgtttatgacataacaaagggacaaacattcgacaatgttcaaaggtggctccgagaattgagagaccatgcagattctaacattgtcattatgatggctggaaacaagtccgaccttaaccaccttcgagcagtctctgagcaggatggtcaaaatttagctgagaaggaaggactgtcatttcttgagacatcggcattggaagcagtcaacgtagataaggcttttcagactatactaaccgagatataccatatcataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69348" stop="66690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69048" g_stop="68879" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68878" i_stop="67358" i_length="1521">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67357" g_stop="66990" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="538" r_length="368" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E306020" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69048" e_stop="68879"/>
          <exon e_start="67357" e_stop="66990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTATGGGGAATAGAGTGGATCATGAGTACGATTACTTGTTTAAGATCGTGTTGATTGGTGATTCTGGAGTTGGAAAATCGAACATTCTGTCTAGGTTTACGCGAAATGAGTTCTGTTTGGAGTCAAAATCTACTATTGGAGTTGAGTTCGCCACTAGAACTCTTCAGGTTAGTACTGATATCACTTTGTTCTAAGTTTAATTTGAAATTTGGTATTGTTTGAGCTCTTAATGTAGTAGTGGTGTTGTATAAGTTCATACCGAAAATTTTTACTCCTGAAAATTGGGGGTAGGGAATCGAACAGTCAGTAACAAGTTGAAAGTTCAGATTGCTATTAACATTCCATGAAAATTGATACTCCTGTTGTGAACTGCTTGACACTTTTCATATCTCGAGATTTAAACTAAAGTAAAGATTATTAACAATATTTTAGGAATGTAATCTGTATCATTTTTTATATGAGGGGAATTGTTTCATGTAGTTTCTATTTTAGGATAAATCTGATTTTTTATTTAAAAGAATAAATTTCGCTTGTTTTTCCTCCATATATAGTCAAATTGACTCTACAAAAGTGTAAAAAAAATGGAGATGGAGGGAATCATACTATCATCTATAGCCTAGTGGAATGTTGATTATTTTATGTGATTTTGTTGAATTTTTTGTGATTATTGATGAGAATAGTGTAGAGATTGGTGGAGTGGTAAAGCCGGTGTATTTTTAGCATCTCCGGTATTCGAGTTGCCGGTTAAATGGATGACTAAAATTTAGGTGGATCAGTTGATGATTGCCCTTTTCTTCCTCTGGTCTGATACAATTCTGGCTAAATGACCATTTTTTATTTTTAAGTTCTAAGGACAAATCAATATATTATAGCATAAACATCAGGTACTGTGAACTCATGAAATCTGTTTCTTCCTCTTTTCAGTAGCCTACAATATTTAGTTGTATTTTCAAGTATGAACAAGATACTAGCACATAGATGCAGTCATGCAGCTGCAACATTCTGTATATATATTCTTGTTTGGAATGAAGTAGTTCAATGATTGTCATGTGTAATGTTAGCAATGAATTTTTTTGAGTTTTGATCTATCTGTACTTCCACTAATGTGCTTTTAAGAAAAAATGTTGATCCGCTTATTGTATGCCTCGGTTTTCTTACTATCCTGCTGTTTTTACGTCTTATATCTCCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCGAGGGTTTATCCGAAACAGTTTCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGTATACTTTCCTCCCCATACCCCACTTATGGGACTATACTAAGAATGTAGTTGTTGGTCTTCTTATGACCTGGAATTTCCGCTTTTAATTGTTATATGTTGGCTCAATCTGATGCTTCTACGTTTTTTTTGTTCTGTTGAAATGAAATTATTGGATGGCAGGACTGGTTGTCTATCTGTAATTTGAATTTGAGTATTTTAATGGTGCTTATGTCCTTTGAGGAAAACCAAATGCTCTGAAATTCTCAACTTTTAAAACTCTTTAAGCTTGGGTGAACCAGGTGTTTGCTTTCTGCTAGCCACAATATCCAATTCCATTTGATAAATTTGCTTTTTCTTTGGCGGGTAAACGTGGCTGAAATGGAATTTATTGTACTGATATCAACACTCATGGGCTATCTACTTCATGATACAGGTTGAGGGAAAGACAGTCAAGGCCCAAATATGGGACACTGCAGGCCAAGAACGGTACCGAGCCATTACCAGTGCTTATTACAGAGGAGCAGTTGGTGCACTCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTCATTTCTTGAGACATCGGCATTGGAAGCAGTCAACGTAGATAAGGCTTTTCAGACTATACTAACCGAGATATACCATATCATAAG</genome_strand>
        <mrna_strand>AAGTTATGGGGAATAGAGTGGATCATGAGTACGATTACTTGTTTAAGATCGTGTTGATTGGTGATTCTGGAGTTGGAAAATCGAACATTCTGTCTAGGTTTACGCGAAATGAGTTCTGTTTGGAGTCAAAATCTACTATTGGAGTTGAGTTCGCCACTAGAACTCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGGAAAGACAGTCAAGGCCCAAATATGGGACACTGCAGGCCAAGAACGGTACCGAGCCATTACCAGTGCTTATTACAGAGGAGCAGTTGGTGCACTCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTCATTTCTTGAGACATCGGCATTGGAAGCAGTCAACGTAGATAAGGCTTTTCAGACTATACTAACCGAGATATACCATATCATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373653" ref_strand="+" ref_description="SGN-E373653 [TUS-33-O16]">
      <seq>caccaaaaatcttatatagaaaaaactcttctccaacatttcgaaactccattgtttctctttctaaagctttctctcacctcccaggttttaatacagagaattgaagttatggggaatagagtggatcatgagtacgattacttgtttaagatcgtgttgattggtgattctggagttggaaaatcgaacattctgtctaggtttacgcgaaatgagttctgtttggagtcaaaatctactattggagttgagttcgccactagaactcttcaggttgagggaaagacagtcaaggcccaaatatgggacactgcaggccaagaacggtaccgagccattaccagtgcttattacagaggagcagttggtgcactccttgtttatgacataacaaagggacaaacattcgacaatgttcaaaggtggctccgagaattgagagaccatgcagattctaacattgtcattatgatggctggaaacaagtccgaccttaaccaccttcgagcagtctctgagcaggatggtcaaaatttagctgagaaggaaggactgtcatttcttgagacatcggcattggaagcagtcaacgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69797" stop="66737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69497" g_stop="69411" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69410" i_stop="69068" i_length="343">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69067" g_stop="68879" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="276" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68878" i_stop="67358" i_length="1521">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67357" g_stop="67037" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="597" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E373653" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69497" e_stop="69411"/>
          <exon e_start="69067" e_stop="68879"/>
          <exon e_start="67357" e_stop="67037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAAAATCTTATATAGAAAAAACTCTTCTCCAACATTTCGAAACTCCATTGTTTCTCTTTCTAAAGCTTTCTCTCACCTCCCAGGTAACCCATTTTGTACTAATTTGAGCATCAATCTATTTTTGTATGTATGCGTATGAATTGTTTTTGTATATATATACCGTGGCGGATCCAGGATTTTAACTTTATAAGTTCAATTTTTAAAGTTTTTAGCATTGAACTCGTTATAATTTTTGAAGTTAAAGAGTTTGTAACTGCTATTTATTGTGAATTTATGTTTAAATCAGTGTATTCAAATGAACCCGTACATCCGCTCTTGGAGAGTATTTTTTATTTGTATTTTCCATTTCTAGGGTTTGTTTGTGTTTGATTTGATTGGAGTGTTGCAGATCTAGATGATGTTTATCTGTTTTTTGATTTTTTGTAGGTTTTAATACAGAGAATTGAAGTTATGGGGAATAGAGTGGATCATGAGTACGATTACTTGTTTAAGATCGTGTTGATTGGTGATTCTGGAGTTGGAAAATCGAACATTCTGTCTAGGTTTACGCGAAATGAGTTCTGTTTGGAGTCAAAATCTACTATTGGAGTTGAGTTCGCCACTAGAACTCTTCAGGTTAGTACTGATATCACTTTGTTCTAAGTTTAATTTGAAATTTGGTATTGTTTGAGCTCTTAATGTAGTAGTGGTGTTGTATAAGTTCATACCGAAAATTTTTACTCCTGAAAATTGGGGGTAGGGAATCGAACAGTCAGTAACAAGTTGAAAGTTCAGATTGCTATTAACATTCCATGAAAATTGATACTCCTGTTGTGAACTGCTTGACACTTTTCATATCTCGAGATTTAAACTAAAGTAAAGATTATTAACAATATTTTAGGAATGTAATCTGTATCATTTTTTATATGAGGGGAATTGTTTCATGTAGTTTCTATTTTAGGATAAATCTGATTTTTTATTTAAAAGAATAAATTTCGCTTGTTTTTCCTCCATATATAGTCAAATTGACTCTACAAAAGTGTAAAAAAAATGGAGATGGAGGGAATCATACTATCATCTATAGCCTAGTGGAATGTTGATTATTTTATGTGATTTTGTTGAATTTTTTGTGATTATTGATGAGAATAGTGTAGAGATTGGTGGAGTGGTAAAGCCGGTGTATTTTTAGCATCTCCGGTATTCGAGTTGCCGGTTAAATGGATGACTAAAATTTAGGTGGATCAGTTGATGATTGCCCTTTTCTTCCTCTGGTCTGATACAATTCTGGCTAAATGACCATTTTTTATTTTTAAGTTCTAAGGACAAATCAATATATTATAGCATAAACATCAGGTACTGTGAACTCATGAAATCTGTTTCTTCCTCTTTTCAGTAGCCTACAATATTTAGTTGTATTTTCAAGTATGAACAAGATACTAGCACATAGATGCAGTCATGCAGCTGCAACATTCTGTATATATATTCTTGTTTGGAATGAAGTAGTTCAATGATTGTCATGTGTAATGTTAGCAATGAATTTTTTTGAGTTTTGATCTATCTGTACTTCCACTAATGTGCTTTTAAGAAAAAATGTTGATCCGCTTATTGTATGCCTCGGTTTTCTTACTATCCTGCTGTTTTTACGTCTTATATCTCCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCGAGGGTTTATCCGAAACAGTTTCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGTATACTTTCCTCCCCATACCCCACTTATGGGACTATACTAAGAATGTAGTTGTTGGTCTTCTTATGACCTGGAATTTCCGCTTTTAATTGTTATATGTTGGCTCAATCTGATGCTTCTACGTTTTTTTTGTTCTGTTGAAATGAAATTATTGGATGGCAGGACTGGTTGTCTATCTGTAATTTGAATTTGAGTATTTTAATGGTGCTTATGTCCTTTGAGGAAAACCAAATGCTCTGAAATTCTCAACTTTTAAAACTCTTTAAGCTTGGGTGAACCAGGTGTTTGCTTTCTGCTAGCCACAATATCCAATTCCATTTGATAAATTTGCTTTTTCTTTGGCGGGTAAACGTGGCTGAAATGGAATTTATTGTACTGATATCAACACTCATGGGCTATCTACTTCATGATACAGGTTGAGGGAAAGACAGTCAAGGCCCAAATATGGGACACTGCAGGCCAAGAACGGTACCGAGCCATTACCAGTGCTTATTACAGAGGAGCAGTTGGTGCACTCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTCATTTCTTGAGACATCGGCATTGGAAGCAGTCAACGTA</genome_strand>
        <mrna_strand>CACCAAAAATCTTATATAGAAAAAACTCTTCTCCAACATTTCGAAACTCCATTGTTTCTCTTTCTAAAGCTTTCTCTCACCTCCCAG.......................................................................................................................................................................................................................................................................................................................................................GTTTTAATACAGAGAATTGAAGTTATGGGGAATAGAGTGGATCATGAGTACGATTACTTGTTTAAGATCGTGTTGATTGGTGATTCTGGAGTTGGAAAATCGAACATTCTGTCTAGGTTTACGCGAAATGAGTTCTGTTTGGAGTCAAAATCTACTATTGGAGTTGAGTTCGCCACTAGAACTCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGGAAAGACAGTCAAGGCCCAAATATGGGACACTGCAGGCCAAGAACGGTACCGAGCCATTACCAGTGCTTATTACAGAGGAGCAGTTGGTGCACTCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTCATTTCTTGAGACATCGGCATTGGAAGCAGTCAACGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307944" ref_strand="+" ref_description="SGN-E307944 [cLEZ-7-J22]">
      <seq>ttctctttctaaagctttctctcacctcccaagttttaatacagagaattgaagttatggggaatagagtggatcatgagtacgattacttgtttaagatcgtgttgattggtgattctggagttggaaaatcgaacattctgtctaggtttacgcgaaatgagttctgtttggagtcaaaatctactattggagttgagttcgccactagaactcttcaggttgagggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="-" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69742" stop="68574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69442" g_stop="69411" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69410" i_stop="69068" i_length="343">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69067" g_stop="68879" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="221" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="-" ref_id="SGN-E307944" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>221</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69442" e_stop="69411"/>
          <exon e_start="69067" e_stop="68879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTTCTAAAGCTTTCTCTCACCTCCCAGGTAACCCATTTTGTACTAATTTGAGCATCAATCTATTTTTGTATGTATGCGTATGAATTGTTTTTGTATATATATACCGTGGCGGATCCAGGATTTTAACTTTATAAGTTCAATTTTTAAAGTTTTTAGCATTGAACTCGTTATAATTTTTGAAGTTAAAGAGTTTGTAACTGCTATTTATTGTGAATTTATGTTTAAATCAGTGTATTCAAATGAACCCGTACATCCGCTCTTGGAGAGTATTTTTTATTTGTATTTTCCATTTCTAGGGTTTGTTTGTGTTTGATTTGATTGGAGTGTTGCAGATCTAGATGATGTTTATCTGTTTTTTGATTTTTTGTAGGTTTTAATACAGAGAATTGAAGTTATGGGGAATAGAGTGGATCATGAGTACGATTACTTGTTTAAGATCGTGTTGATTGGTGATTCTGGAGTTGGAAAATCGAACATTCTGTCTAGGTTTACGCGAAATGAGTTCTGTTTGGAGTCAAAATCTACTATTGGAGTTGAGTTCGCCACTAGAACTCTTCAG</genome_strand>
        <mrna_strand>TTCTCTTTCTAAAGCTTTCTCTCACCTCCCAA.......................................................................................................................................................................................................................................................................................................................................................GTTTTAATACAGAGAATTGAAGTTATGGGGAATAGAGTGGATCATGAGTACGATTACTTGTTTAAGATCGTGTTGATTGGTGATTCTGGAGTTGGAAAATCGAACATTCTGTCTAGGTTTACGCGAAATGAGTTCTGTTTGGAGTCAAAATCTACTATTGGAGTTGAGTTCGCCACTAGAACTCTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398689" ref_strand="+" ref_description="SGN-E398689 [TUS-45-M23]">
      <seq>gtggtaaacagagtttgtaaacaatatgccttctgcttgcatacaaaatcaaatatcctgaaaacttctttctcttgagaggaaatcatgaatgtgcttctattaatcgaatttatggtttctatgatgaatgtaagcgccgattcaatgtgaagctatggaaatgcttcacagaatgtttcaattgtcttcccgttgctgctctcatagatgaaaaaatactgtgcatgcatggtggtctttctccagatttaacaaacttggatcagataagaaatttacctcgtccaactgatgttccagattctgggttgctgtgtgatttactttggtcagatcctagccgggaagttaaaggttggggaatgaatgataggggagtttcatatacttttggtcctgataaggttgcagaattcttgatgcaacacgatatggaccttgtttgtcgtgcccaccaggttgttgaagatggttatgaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80245" stop="81263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80545" g_stop="81030" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E398689" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80545" e_stop="81030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTAAACAGAGTTTGGAAACAATATGCCTTCTGCTTGCATACAAAATCAAATATCCTGAAAACTTCTTTCTCTTGAGAGGAAATCATGAATGTGCTTCTATTAATCGAATTTATGGTTTCTATGATGAATGTAAGCGCCGATTCAATGTGAAGCTATGGAAATGCTTCACAGAATGTTTCAATTGTCTTCCCGTTGCTGCTCTCATAGATGAAAAAATACTGTGCATGCATGGTGGTCTTTCTCCAGATTTAACAAACTTGGATCAGATAAGAAATTTACCTCGTCCAACTGATGTTCCAGATTCTGGGTTGCTGTGTGATTTACTTTGGTCAGATCCTAGCCGGGAAGTTAAAGGTTGGGGAATGAATGATAGGGGAGTTTCATATACTTTTGGTCCTGATAAGGTTGCAGAATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>GTGGTAAACAGAGTTTGTAAACAATATGCCTTCTGCTTGCATACAAAATCAAATATCCTGAAAACTTCTTTCTCTTGAGAGGAAATCATGAATGTGCTTCTATTAATCGAATTTATGGTTTCTATGATGAATGTAAGCGCCGATTCAATGTGAAGCTATGGAAATGCTTCACAGAATGTTTCAATTGTCTTCCCGTTGCTGCTCTCATAGATGAAAAAATACTGTGCATGCATGGTGGTCTTTCTCCAGATTTAACAAACTTGGATCAGATAAGAAATTTACCTCGTCCAACTGATGTTCCAGATTCTGGGTTGCTGTGTGATTTACTTTGGTCAGATCCTAGCCGGGAAGTTAAAGGTTGGGGAATGAATGATAGGGGAGTTTCATATACTTTTGGTCCTGATAAGGTTGCAGAATTCTTGATGCAACACGATATGGACCTTGTTTGTCGTGCCCACCAGGTTGTTGAAGATGGTTATGAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292486" ref_strand="+" ref_description="SGN-E292486 [cLET-16-O14]">
      <seq>tggtaaacagagtttggaaacaatatgccttctgcttgcatacaaaatcaaatatcctgaaaacttctttctcttgagaggaaatcatgaatgtgcttctattaatcgaatttatggtttctatgatgaatgtaagcgccgattcaatgtgaagctatggaaatgcttcacagaatgtttcaattgtcttcccgttgctgctctcatagatgaaaaaatactgtgcatgcatggtggtctttctccagatttaacaaacttggatcagataagaaatttacctcgtccaactgatgttccagattctgggttgctgtgtgatttactttggtcagatcctagccgggaagttaaaggttggggaatgaatgataggggagtttcatatacttttggtcctgataaggttgcagaattcttgatgcaacacgatatggaccttgtttgtcgtgcccaccaggttgttgaagatggttatgaatttttcgctgagaggcagctagtgacaatattttccgccccaaactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0008G21-R35fh/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0008G21.1" temp_strand="+" temp_description="C06SLe0008G21.1  AC211081.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0008G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80246" stop="81263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80546" g_stop="81077" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0008G21.1" gen_strand="+" ref_id="SGN-E292486" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0008G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80546" e_stop="81077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAAACAGAGTTTGGAAACAATATGCCTTCTGCTTGCATACAAAATCAAATATCCTGAAAACTTCTTTCTCTTGAGAGGAAATCATGAATGTGCTTCTATTAATCGAATTTATGGTTTCTATGATGAATGTAAGCGCCGATTCAATGTGAAGCTATGGAAATGCTTCACAGAATGTTTCAATTGTCTTCCCGTTGCTGCTCTCATAGATGAAAAAATACTGTGCATGCATGGTGGTCTTTCTCCAGATTTAACAAACTTGGATCAGATAAGAAATTTACCTCGTCCAACTGATGTTCCAGATTCTGGGTTGCTGTGTGATTTACTTTGGTCAGATCCTAGCCGGGAAGTTAAAGGTTGGGGAATGAATGATAGGGGAGTTTCATATACTTTTGGTCCTGATAAGGTTGCAGAATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCATGACTTAT</genome_strand>
        <mrna_strand>TGGTAAACAGAGTTTGGAAACAATATGCCTTCTGCTTGCATACAAAATCAAATATCCTGAAAACTTCTTTCTCTTGAGAGGAAATCATGAATGTGCTTCTATTAATCGAATTTATGGTTTCTATGATGAATGTAAGCGCCGATTCAATGTGAAGCTATGGAAATGCTTCACAGAATGTTTCAATTGTCTTCCCGTTGCTGCTCTCATAGATGAAAAAATACTGTGCATGCATGGTGGTCTTTCTCCAGATTTAACAAACTTGGATCAGATAAGAAATTTACCTCGTCCAACTGATGTTCCAGATTCTGGGTTGCTGTGTGATTTACTTTGGTCAGATCCTAGCCGGGAAGTTAAAGGTTGGGGAATGAATGATAGGGGAGTTTCATATACTTTTGGTCCTGATAAGGTTGCAGAATTCTTGATGCAACACGATATGGACCTTGTTTGTCGTGCCCACCAGGTTGTTGAAGATGGTTATGAATTTTTCGCTGAGAGGCAGCTAGTGACAATATTTTCCGC-CCCA-AACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>182</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="11327" PGL_stop="7061"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11327" e_stop="11211"/>
            <exon e_start="8578" e_stop="8475"/>
            <exon e_start="8185" e_stop="8109"/>
            <exon e_start="7407" e_stop="7061"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.866" acc_prob="0.972" e_score="0.991"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="11327" e_stop="11211" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.866" acc_prob="0.972">
            <gDNA_intron_boundary i_start="11210" i_stop="8579" i_length="2632"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8578" e_stop="8475" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="8474" i_stop="8186" i_length="289"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8185" e_stop="8109" e_length="77"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8108" i_stop="7408" i_length="701"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="7407" e_stop="7061" e_length="347"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11327" stop="11211"/>
              <exon start="8578" stop="8475"/>
              <exon start="8185" stop="8109"/>
              <exon start="7407" stop="7244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8486" stop="8475"/>
              <exon start="8185" stop="8109"/>
              <exon start="7407" stop="7061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8141" stop="8109"/>
              <exon start="7407" stop="7061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8140" stop="8109"/>
              <exon start="7407" stop="7061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCTCCTCTTGGACCTTTGCCATCACTTCTCCGTTAGATTTTCTTTTTTCAACAAAATTTGAAGCTTTTACTTGCGGTGGAGCATCAAAGTTTACATCTTTGGTCTTGATTTAAG : TCAATGGAGCACGGTTCATTTGAAGATCAGTCAAAAGCAACATTCTCGCTGACAGATGAGGATCATACACTGGCAAATGCTGTTAGATTCACTCTAAATCAAGA : TCCCAGAGTAACATTTTGTGGTTACAGCATTCCACATCCCTCTGATGCTCGAGTGAATATAAGAGTTCAGACTACTG : GGGATCCAGCAAGGGAGGTATTCAATGATTCATGTCAGGATCTTATGCTTATCTGCGAACATGTTAGAGGCACATTTGATCAGGCTGTTTTAAAGTTTAAAACCGGAAAAGGTCTGAGTGCTATGGATATCAAGAAATGATTTGACTAATAGTTTAAATAGCCTTCTATCCATGTGAATTTTTTCCTGTTTTGCAAACACGAGGAAACCATCAAAAGCAATTGTTTATTTGGTGCACTAAATTGCTTTTTTTTTTTGCAAAATCATGCTAAAGAATGCACCTTTGGCTGTATGGAAATATTAATCTGCTCATTGGTTGTTTTATGTAGTAATTTTATGTTCTAGTTT</gDNA_template>
            <first_frame> F  S  P  L  G  P  L  P  S  L  L  R  *  I  F  F  F  Q  Q  N  L  K  L  L  L  A  V  E  H  Q  S  L  H  L  W  S  *  F  K  :  S  M  E  H  G  S  F  E  D  Q  S  K  A  T  F  S  L  T  D  E  D  H  T  L  A  N  A  V  R  F  T  L  N  Q  D :   P  R  V  T  F  C  G  Y  S  I  P  H  P  S  D  A  R  V  N  I  R  V  Q  T  T   : G  D  P  A  R  E  V  F  N  D  S  C  Q  D  L  M  L  I  C  E  H  V  R  G  T  F  D  Q  A  V  L  K  F  K  T  G  K  G  L  S  A  M  D  I  K  K  *  F  D  *  *  F  K  *  P  S  I  H  V  N  F  F  L  F  C  K  H  E  E  T  I  K  S  N  C  L  F  G  A  L  N  C  F  F  F  L  Q  N  H  A  K  E  C  T  F  G  C  M  E  I  L  I  C  S  L  V  V  L  C  S  N  F  M  F  *  F </first_frame>
            <second_frame>  F  L  L  L  D  L  C  H  H  F  S  V  R  F  S  F  F  N  K  I  *  S  F  Y  L  R  W  S  I  K  V  Y  I  F  G  L  D  L  S :   Q  W  S  T  V  H  L  K  I  S  Q  K  Q  H  S  R  *  Q  M  R  I  I  H  W  Q  M  L  L  D  S  L  *  I  K   : I  P  E  *  H  F  V  V  T  A  F  H  I  P  L  M  L  E  *  I  *  E  F  R  L  L  :  G  I  Q  Q  G  R  Y  S  M  I  H  V  R  I  L  C  L  S  A  N  M  L  E  A  H  L  I  R  L  F  *  S  L  K  P  E  K  V  *  V  L  W  I  S  R  N  D  L  T  N  S  L  N  S  L  L  S  M  *  I  F  S  C  F  A  N  T  R  K  P  S  K  A  I  V  Y  L  V  H  *  I  A  F  F  F  C  K  I  M  L  K  N  A  P  L  A  V  W  K  Y  *  S  A  H  W  L  F  Y  V  V  I  L  C  S  S   </second_frame>
            <third_frame>   F  S  S  W  T  F  A  I  T  S  P  L  D  F  L  F  S  T  K  F  E  A  F  T  C  G  G  A  S  K  F  T  S  L  V  L  I  *   : V  N  G  A  R  F  I  *  R  S  V  K  S  N  I  L  A  D  R  *  G  S  Y  T  G  K  C  C  *  I  H  S  K  S  R  :  S  Q  S  N  I  L  W  L  Q  H  S  T  S  L  *  C  S  S  E  Y  K  S  S  D  Y  W :   G  S  S  K  G  G  I  Q  *  F  M  S  G  S  Y  A  Y  L  R  T  C  *  R  H  I  *  S  G  C  F  K  V  *  N  R  K  R  S  E  C  Y  G  Y  Q  E  M  I  *  L  I  V  *  I  A  F  Y  P  C  E  F  F  P  V  L  Q  T  R  G  N  H  Q  K  Q  L  F  I  W  C  T  K  L  L  F  F  F  A  K  S  C  *  R  M  H  L  W  L  Y  G  N  I  N  L  L  I  G  C  F  M  *  *  F  Y  V  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0008G21.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11216" stop="11211"/>
                    <exon start="8578" stop="8475"/>
                    <exon start="8185" stop="8109"/>
                    <exon start="7407" stop="7268"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKSMEHGSFEDQSKATFSLTDEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVFNDSCQDLMLICEHVRGTFDQAVLKFKTGKGLSAMDIKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="7414" e_stop="7061"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="7414" e_stop="7061" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7414" stop="7061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226101" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGCAGGGGATCCAGCAAGGGAGGTATTCAATGATTCATGTCAGGATCTTATGCTTATCTGCGAACATGTTAGAGGCACATTTGATCAGGCTGTTTTAAAGTTTAAAACCGGAAAAGGTCTGAGTGCTATGGATATCAAGAAATGATTTGACTAATAGTTTAAATAGCCTTCTATCCATGTGAATTTTTTCCTGTTTTGCAAACACGAGGAAACCATCAAAAGCAATTGTTTATTTGGTGCACTAAATTGCTTTTTTTTTTTGCAAAATCATGCTAAAGAATGCACCTTTGGCTGTATGGAAATATTAATCTGCTCATTGGTTGTTTTATGTAGTAATTTTATGTTCTAGTTT</gDNA_template>
            <first_frame> I  A  G  D  P  A  R  E  V  F  N  D  S  C  Q  D  L  M  L  I  C  E  H  V  R  G  T  F  D  Q  A  V  L  K  F  K  T  G  K  G  L  S  A  M  D  I  K  K  *  F  D  *  *  F  K  *  P  S  I  H  V  N  F  F  L  F  C  K  H  E  E  T  I  K  S  N  C  L  F  G  A  L  N  C  F  F  F  L  Q  N  H  A  K  E  C  T  F  G  C  M  E  I  L  I  C  S  L  V  V  L  C  S  N  F  M  F  *  F </first_frame>
            <second_frame>  L  Q  G  I  Q  Q  G  R  Y  S  M  I  H  V  R  I  L  C  L  S  A  N  M  L  E  A  H  L  I  R  L  F  *  S  L  K  P  E  K  V  *  V  L  W  I  S  R  N  D  L  T  N  S  L  N  S  L  L  S  M  *  I  F  S  C  F  A  N  T  R  K  P  S  K  A  I  V  Y  L  V  H  *  I  A  F  F  F  C  K  I  M  L  K  N  A  P  L  A  V  W  K  Y  *  S  A  H  W  L  F  Y  V  V  I  L  C  S  S   </second_frame>
            <third_frame>   C  R  G  S  S  K  G  G  I  Q  *  F  M  S  G  S  Y  A  Y  L  R  T  C  *  R  H  I  *  S  G  C  F  K  V  *  N  R  K  R  S  E  C  Y  G  Y  Q  E  M  I  *  L  I  V  *  I  A  F  Y  P  C  E  F  F  P  V  L  Q  T  R  G  N  H  Q  K  Q  L  F  I  W  C  T  K  L  L  F  F  F  A  K  S  C  *  R  M  H  L  W  L  Y  G  N  I  N  L  L  I  G  C  F  M  *  *  F  Y  V  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLe0008G21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="15622" PGL_stop="15908"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15622" e_stop="15908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="15622" e_stop="15908" e_length="287"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15622" stop="15908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15622" stop="15908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229090" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTTTAAAAGATGTTGTCACTGATTCAAAAGAATAGAGCATTCTACTTTATGCCTTCGCGTAATGAAGTCTCTACGCCTGTTTTTGTCATCTCAAAAAGTGGAAGTTCTTTAGGTGTCATACATCCTTGTAGAAAAAAAAAACTGCAACAGTCAGCCCAATCAAGTTGTGAACTGCTTGTAGTATATATGTGCTAGTTTGTGAAACTTGCAAGTTGTATGGCATGAAACATGCAAATGTTAAATTAAAACTCATATGTGAATCAAAACAAGAAACCATTTTTGAAC</gDNA_template>
            <first_frame> M  F  K  R  C  C  H  *  F  K  R  I  E  H  S  T  L  C  L  R  V  M  K  S  L  R  L  F  L  S  S  Q  K  V  E  V  L  *  V  S  Y  I  L  V  E  K  K  N  C  N  S  Q  P  N  Q  V  V  N  C  L  *  Y  I  C  A  S  L  *  N  L  Q  V  V  W  H  E  T  C  K  C  *  I  K  T  H  M  *  I  K  T  R  N  H  F  *   </first_frame>
            <second_frame>  C  L  K  D  V  V  T  D  S  K  E  *  S  I  L  L  Y  A  F  A  *  *  S  L  Y  A  C  F  C  H  L  K  K  W  K  F  F  R  C  H  T  S  L  *  K  K  K  T  A  T  V  S  P  I  K  L  *  T  A  C  S  I  Y  V  L  V  C  E  T  C  K  L  Y  G  M  K  H  A  N  V  K  L  K  L  I  C  E  S  K  Q  E  T  I  F  E  </second_frame>
            <third_frame>   V  *  K  M  L  S  L  I  Q  K  N  R  A  F  Y  F  M  P  S  R  N  E  V  S  T  P  V  F  V  I  S  K  S  G  S  S  L  G  V  I  H  P  C  R  K  K  K  L  Q  Q  S  A  Q  S  S  C  E  L  L  V  V  Y  M  C  *  F  V  K  L  A  S  C  M  A  *  N  M  Q  M  L  N  *  N  S  Y  V  N  Q  N  K  K  P  F  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLe0008G21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="18830" PGL_stop="18249"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18830" e_stop="18249"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="18830" e_stop="18249" e_length="582"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18830" stop="18249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329292" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGAAGAAAAAAGGAAAACTCTACTCCATTGTCATTGCAAGTCACAATTACTTCTCTACTTTTAGAAAAAGCAAAAGAGAACAAGAAATTACTCCAACATACTCACCATTTCAGCCATGCTTCTCATCATCAACTCCTTTAAAATCCTTCAATTTTTTCCTCAGCCTCTGATCTGATAATCATCAGCTTCTCTTTTTTCCTTAATTTATGAGCTAAGAAGCAGTTACTTCAAGCCATTTCCTTTGAAAGTTCAATCTTTCAAGGTCAAAAGAGTTTCTTGAAATGCTTCAAAAATTGCATCTTTTTCTCATTTTGTGCTCAAAGGCAATTTCTTTTTGATAAAAAAGTGTCAAACTTTTTAATGCAGAACCTCAAGAATGCTACCAGTTGTCCTTGTTTTCTCAATCTGTGAGCTGAAAGACAGTTTTTTGGGTAATGGGTACTTAAAAGTTTCAACTTTTAACACTTCTCATCTTGAATTCTGTTGATTTTCGTTAAATTCTTCAATCTTCCCTCTCAATCTGTGAACTGAAAGACAGTTTTTTGGTTGAAAAATGCCTAATCTTGGAGTTAATAAAGCT</gDNA_template>
            <first_frame> E  E  E  K  R  K  T  L  L  H  C  H  C  K  S  Q  L  L  L  Y  F  *  K  K  Q  K  R  T  R  N  Y  S  N  I  L  T  I  S  A  M  L  L  I  I  N  S  F  K  I  L  Q  F  F  P  Q  P  L  I  *  *  S  S  A  S  L  F  S  L  I  Y  E  L  R  S  S  Y  F  K  P  F  P  L  K  V  Q  S  F  K  V  K  R  V  S  *  N  A  S  K  I  A  S  F  S  H  F  V  L  K  G  N  F  F  L  I  K  K  C  Q  T  F  *  C  R  T  S  R  M  L  P  V  V  L  V  F  S  I  C  E  L  K  D  S  F  L  G  N  G  Y  L  K  V  S  T  F  N  T  S  H  L  E  F  C  *  F  S  L  N  S  S  I  F  P  L  N  L  *  T  E  R  Q  F  F  G  *  K  M  P  N  L  G  V  N  K  A </first_frame>
            <second_frame>  K  K  K  K  G  K  L  Y  S  I  V  I  A  S  H  N  Y  F  S  T  F  R  K  S  K  R  E  Q  E  I  T  P  T  Y  S  P  F  Q  P  C  F  S  S  S  T  P  L  K  S  F  N  F  F  L  S  L  *  S  D  N  H  Q  L  L  F  F  P  *  F  M  S  *  E  A  V  T  S  S  H  F  L  *  K  F  N  L  S  R  S  K  E  F  L  E  M  L  Q  K  L  H  L  F  L  I  L  C  S  K  A  I  S  F  *  *  K  S  V  K  L  F  N  A  E  P  Q  E  C  Y  Q  L  S  L  F  S  Q  S  V  S  *  K  T  V  F  W  V  M  G  T  *  K  F  Q  L  L  T  L  L  I  L  N  S  V  D  F  R  *  I  L  Q  S  S  L  S  I  C  E  L  K  D  S  F  L  V  E  K  C  L  I  L  E  L  I  K   </second_frame>
            <third_frame>   R  R  K  K  E  N  S  T  P  L  S  L  Q  V  T  I  T  S  L  L  L  E  K  A  K  E  N  K  K  L  L  Q  H  T  H  H  F  S  H  A  S  H  H  Q  L  L  *  N  P  S  I  F  S  S  A  S  D  L  I  I  I  S  F  S  F  F  L  N  L  *  A  K  K  Q  L  L  Q  A  I  S  F  E  S  S  I  F  Q  G  Q  K  S  F  L  K  C  F  K  N  C  I  F  F  S  F  C  A  Q  R  Q  F  L  F  D  K  K  V  S  N  F  L  M  Q  N  L  K  N  A  T  S  C  P  C  F  L  N  L  *  A  E  R  Q  F  F  G  *  W  V  L  K  S  F  N  F  *  H  F  S  S  *  I  L  L  I  F  V  K  F  F  N  L  P  S  Q  S  V  N  *  K  T  V  F  W  L  K  N  A  *  S  W  S  *  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0008G21.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18618" stop="18418"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKKQLLQAISFESSIFQGQKSFLKCFKNCIFFSFCAQRQFLFDKKVSNFLMQNLKNATSCPCFLNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="28341" PGL_stop="31379"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28341" e_stop="28813"/>
            <exon e_start="29727" e_stop="29996"/>
            <exon e_start="30454" e_stop="31295"/>
            <exon e_start="31361" e_stop="31379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.761" e_score="0.988"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28341" e_stop="28813" e_length="473"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28814" i_stop="29726" i_length="913"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29727" e_stop="29996" e_length="270"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.901">
            <gDNA_intron_boundary i_start="29997" i_stop="30453" i_length="457"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="30454" e_stop="31295" e_length="842"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.761">
            <gDNA_intron_boundary i_start="31296" i_stop="31360" i_length="65"/>
          </intron>
          <exon e_serial="4" e_score="0.667">
            <gDNA_exon_boundary e_start="31361" e_stop="31379" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28341" stop="28813"/>
              <exon start="29727" stop="29996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28341" stop="28813"/>
              <exon start="29727" stop="29847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28345" stop="28642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28348" stop="28761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28349" stop="28813"/>
              <exon start="29727" stop="29996"/>
              <exon start="30454" stop="31295"/>
              <exon start="31361" stop="31369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28350" stop="28813"/>
              <exon start="29727" stop="29931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28350" stop="28773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28351" stop="28813"/>
              <exon start="29727" stop="29835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28351" stop="28694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28353" stop="28740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28358" stop="28785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28359" stop="28794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28360" stop="28809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28360" stop="28760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28360" stop="28595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28363" stop="28813"/>
              <exon start="29727" stop="29841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28367" stop="28809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28381" stop="28739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28384" stop="28784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28385" stop="28813"/>
              <exon start="29727" stop="29895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28385" stop="28750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28388" stop="28767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28392" stop="28813"/>
              <exon start="29727" stop="29967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28392" stop="28813"/>
              <exon start="29727" stop="29837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28392" stop="28813"/>
              <exon start="29727" stop="29779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28395" stop="28692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28396" stop="28813"/>
              <exon start="29727" stop="29890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28396" stop="28813"/>
              <exon start="29727" stop="29831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28396" stop="28813"/>
              <exon start="29727" stop="29831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28396" stop="28813"/>
              <exon start="29727" stop="29786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28396" stop="28813"/>
              <exon start="29727" stop="29749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28396" stop="28786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28396" stop="28705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28398" stop="28813"/>
              <exon start="29727" stop="29931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28400" stop="28813"/>
              <exon start="29727" stop="29996"/>
              <exon start="30454" stop="30615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28406" stop="28813"/>
              <exon start="29727" stop="29780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28406" stop="28762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28406" stop="28711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28410" stop="28813"/>
              <exon start="29727" stop="29941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28410" stop="28813"/>
              <exon start="29727" stop="29931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28410" stop="28813"/>
              <exon start="29727" stop="29829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28410" stop="28670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28411" stop="28765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28412" stop="28813"/>
              <exon start="29727" stop="29781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28412" stop="28759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28419" stop="28813"/>
              <exon start="29727" stop="29996"/>
              <exon start="30454" stop="30480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28419" stop="28813"/>
              <exon start="29727" stop="29940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28419" stop="28813"/>
              <exon start="29727" stop="29889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28425" stop="28813"/>
              <exon start="29727" stop="29778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28457" stop="28813"/>
              <exon start="29727" stop="29783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28555" stop="28813"/>
              <exon start="29727" stop="29786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362606" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28569" stop="28813"/>
              <exon start="29727" stop="29977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28783" stop="28813"/>
              <exon start="29727" stop="29996"/>
              <exon start="30454" stop="30900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28783" stop="28813"/>
              <exon start="29727" stop="29996"/>
              <exon start="30454" stop="30840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29961" stop="29996"/>
              <exon start="30454" stop="30703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30651" stop="31295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30652" stop="31295"/>
              <exon start="31361" stop="31379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362815" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30663" stop="31295"/>
              <exon start="31361" stop="31379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374065" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30951" stop="31295"/>
              <exon start="31361" stop="31369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224028" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATTGATCATTCGCTCTCATTTCATTCTCGTCCTTCCTCCCTCGACGATACCCTTTATCTACAAAAAAAAATAAAAATGCGTGAAATTCTCCATATACAAGGTGGCCAATGCGGCAACCAAATCGGGGCTAAGTTTTGGGAGGTGGTATGCGCCGAGCATGGGATTGATGCAACCGGCGCGTACCATGGGGAGTCAGATATTCAACTCGAGAGAGTGAATGTATATTATAATGAGGCGAGTTGTGGGCGCTTCGTACCTCGTGCTGTTCTTATGGATTTAGAGCCTGGTACTATGGACAGTGTTAGATCTGGAACTTATGGTCAGATTTTTAGGCCTGATAACTTTGTATTCGGTCAATCTGGTGCCGGTAATAATTGGGCTAAAGGTCATTATACTGAAGGTGCTGAGTTGATTGATTCCGTTCTCGATGTTGTTAGGAAAGAAGCTGAGAATTGTGATTGTCTACAAG : GGTTTCAGGTGTGTCATTCCCTGGGAGGAGGGACTGGGTCTGGAATGGGGACACTTCTCATTTCAAAGATTCGAGAGGAATACCCAGATAGGATGATGCTGACATTCTCTGTCTTCCCATCGCCAAAGGTTTCAGACACAGTTGTAGAGCCTTACAATGCTACATTGTCTGTTCATCAGCTTGTAGAGAATGCAGATGAGTGCATGGTTCTTGACAATGAGGCTTTATATGACATTTGTTTCCGAACCCTCAAGCTTACAACTCCTAGCT : TTGGTGATTTGAATCACTTAATATCTGCAACCATGTCCGGAGTTACTTGTTGTCTCAGATTCCCTGGACAGCTTAACTCTGATCTGAGGAAACTTGCTGTGAATCTCATTCCTTTCCCCCGTCTCCACTTCTTCATGGTTGGGTTTGTTCCACTTACCTCACGTGGTTCACAACAGTACCGCGCTTTATCTGTTCCTGAGCTTACTCAACAAATGTGGGATGCAAAGAACATGATGTGTGCTGCTGACCCTAGGCATGGCCGCTATTTGACAGCATCAGCAATGTTTAGGGGGAAAATGAGCACCAAGGAAGTTGATGAGCAGATGCTTAATGTGCAGAACAAAAATTCTTCATACTTCGTTGAGTGGATCCCCAACAACGTTAAGTCAACAGTCTGTGATATTCCACCAACTGGTCTAAAGATGGCATCGACTTTCATTGGAAATTCAACCTCAATACAAGAGATGTTCCGTCGTGTCAGTGAGCAATTCACAGCCATGTTTAGGAGGAAGGCTTTCTTGCATTGGTACACAGGGGAAGGAATGGATGAGATGGAGTTCACTGAGGCAGAGAGCAACATGAATGATCTGGTCTCTGAGTACCAACAGTACCAAGATGCAGTAGCAGATGAGGATGAAGGATACGAGGACGAAGATGAAGCATATCATGACTAGTATGCTTATGCCGGGAAATCTTATCTTATATTTTAAAAGTAATAGTTCGTTTCAACTGTGCATGAACTTTTTAGTAGTGAAGAGAAAGCGACTAACCTGTATTTTTGTCGAACTTGTCACTACCCCTTAATTGCATATTGAATATTTGTTGCTTTTGCTAAGCAATCT : TAAAATGAACCTGTGCTTA</gDNA_template>
            <first_frame> *  N  *  S  F  A  L  I  S  F  S  S  F  L  P  R  R  Y  P  L  S  T  K  K  N  K  N  A  *  N  S  P  Y  T  R  W  P  M  R  Q  P  N  R  G  *  V  L  G  G  G  M  R  R  A  W  D  *  C  N  R  R  V  P  W  G  V  R  Y  S  T  R  E  S  E  C  I  L  *  *  G  E  L  W  A  L  R  T  S  C  C  S  Y  G  F  R  A  W  Y  Y  G  Q  C  *  I  W  N  L  W  S  D  F  *  A  *  *  L  C  I  R  S  I  W  C  R  *  *  L  G  *  R  S  L  Y  *  R  C  *  V  D  *  F  R  S  R  C  C  *  E  R  S  *  E  L  *  L  S  T  R :   V  S  G  V  S  F  P  G  R  R  D  W  V  W  N  G  D  T  S  H  F  K  D  S  R  G  I  P  R  *  D  D  A  D  I  L  C  L  P  I  A  K  G  F  R  H  S  C  R  A  L  Q  C  Y  I  V  C  S  S  A  C  R  E  C  R  *  V  H  G  S  *  Q  *  G  F  I  *  H  L  F  P  N  P  Q  A  Y  N  S  *  L :   W  *  F  E  S  L  N  I  C  N  H  V  R  S  Y  L  L  S  Q  I  P  W  T  A  *  L  *  S  E  E  T  C  C  E  S  H  S  F  P  P  S  P  L  L  H  G  W  V  C  S  T  Y  L  T  W  F  T  T  V  P  R  F  I  C  S  *  A  Y  S  T  N  V  G  C  K  E  H  D  V  C  C  *  P  *  A  W  P  L  F  D  S  I  S  N  V  *  G  E  N  E  H  Q  G  S  *  *  A  D  A  *  C  A  E  Q  K  F  F  I  L  R  *  V  D  P  Q  Q  R  *  V  N  S  L  *  Y  S  T  N  W  S  K  D  G  I  D  F  H  W  K  F  N  L  N  T  R  D  V  P  S  C  Q  *  A  I  H  S  H  V  *  E  E  G  F  L  A  L  V  H  R  G  R  N  G  *  D  G  V  H  *  G  R  E  Q  H  E  *  S  G  L  *  V  P  T  V  P  R  C  S  S  R  *  G  *  R  I  R  G  R  R  *  S  I  S  *  L  V  C  L  C  R  E  I  L  S  Y  I  L  K  V  I  V  R  F  N  C  A  *  T  F  *  *  *  R  E  S  D  *  P  V  F  L  S  N  L  S  L  P  L  N  C  I  L  N  I  C  C  F  C  *  A  I   : L  K  *  T  C  A   </first_frame>
            <second_frame>  K  I  D  H  S  L  S  F  H  S  R  P  S  S  L  D  D  T  L  Y  L  Q  K  K  I  K  M  R  E  I  L  H  I  Q  G  G  Q  C  G  N  Q  I  G  A  K  F  W  E  V  V  C  A  E  H  G  I  D  A  T  G  A  Y  H  G  E  S  D  I  Q  L  E  R  V  N  V  Y  Y  N  E  A  S  C  G  R  F  V  P  R  A  V  L  M  D  L  E  P  G  T  M  D  S  V  R  S  G  T  Y  G  Q  I  F  R  P  D  N  F  V  F  G  Q  S  G  A  G  N  N  W  A  K  G  H  Y  T  E  G  A  E  L  I  D  S  V  L  D  V  V  R  K  E  A  E  N  C  D  C  L  Q   : G  F  Q  V  C  H  S  L  G  G  G  T  G  S  G  M  G  T  L  L  I  S  K  I  R  E  E  Y  P  D  R  M  M  L  T  F  S  V  F  P  S  P  K  V  S  D  T  V  V  E  P  Y  N  A  T  L  S  V  H  Q  L  V  E  N  A  D  E  C  M  V  L  D  N  E  A  L  Y  D  I  C  F  R  T  L  K  L  T  T  P  S   : F  G  D  L  N  H  L  I  S  A  T  M  S  G  V  T  C  C  L  R  F  P  G  Q  L  N  S  D  L  R  K  L  A  V  N  L  I  P  F  P  R  L  H  F  F  M  V  G  F  V  P  L  T  S  R  G  S  Q  Q  Y  R  A  L  S  V  P  E  L  T  Q  Q  M  W  D  A  K  N  M  M  C  A  A  D  P  R  H  G  R  Y  L  T  A  S  A  M  F  R  G  K  M  S  T  K  E  V  D  E  Q  M  L  N  V  Q  N  K  N  S  S  Y  F  V  E  W  I  P  N  N  V  K  S  T  V  C  D  I  P  P  T  G  L  K  M  A  S  T  F  I  G  N  S  T  S  I  Q  E  M  F  R  R  V  S  E  Q  F  T  A  M  F  R  R  K  A  F  L  H  W  Y  T  G  E  G  M  D  E  M  E  F  T  E  A  E  S  N  M  N  D  L  V  S  E  Y  Q  Q  Y  Q  D  A  V  A  D  E  D  E  G  Y  E  D  E  D  E  A  Y  H  D  *  Y  A  Y  A  G  K  S  Y  L  I  F  *  K  *  *  F  V  S  T  V  H  E  L  F  S  S  E  E  K  A  T  N  L  Y  F  C  R  T  C  H  Y  P  L  I  A  Y  *  I  F  V  A  F  A  K  Q  S  :  *  N  E  P  V  L  </second_frame>
            <third_frame>   K  L  I  I  R  S  H  F  I  L  V  L  P  P  S  T  I  P  F  I  Y  K  K  K  *  K  C  V  K  F  S  I  Y  K  V  A  N  A  A  T  K  S  G  L  S  F  G  R  W  Y  A  P  S  M  G  L  M  Q  P  A  R  T  M  G  S  Q  I  F  N  S  R  E  *  M  Y  I  I  M  R  R  V  V  G  A  S  Y  L  V  L  F  L  W  I  *  S  L  V  L  W  T  V  L  D  L  E  L  M  V  R  F  L  G  L  I  T  L  Y  S  V  N  L  V  P  V  I  I  G  L  K  V  I  I  L  K  V  L  S  *  L  I  P  F  S  M  L  L  G  K  K  L  R  I  V  I  V  Y  K  :  G  F  R  C  V  I  P  W  E  E  G  L  G  L  E  W  G  H  F  S  F  Q  R  F  E  R  N  T  Q  I  G  *  C  *  H  S  L  S  S  H  R  Q  R  F  Q  T  Q  L  *  S  L  T  M  L  H  C  L  F  I  S  L  *  R  M  Q  M  S  A  W  F  L  T  M  R  L  Y  M  T  F  V  S  E  P  S  S  L  Q  L  L  A  :  L  V  I  *  I  T  *  Y  L  Q  P  C  P  E  L  L  V  V  S  D  S  L  D  S  L  T  L  I  *  G  N  L  L  *  I  S  F  L  S  P  V  S  T  S  S  W  L  G  L  F  H  L  P  H  V  V  H  N  S  T  A  L  Y  L  F  L  S  L  L  N  K  C  G  M  Q  R  T  *  C  V  L  L  T  L  G  M  A  A  I  *  Q  H  Q  Q  C  L  G  G  K  *  A  P  R  K  L  M  S  R  C  L  M  C  R  T  K  I  L  H  T  S  L  S  G  S  P  T  T  L  S  Q  Q  S  V  I  F  H  Q  L  V  *  R  W  H  R  L  S  L  E  I  Q  P  Q  Y  K  R  C  S  V  V  S  V  S  N  S  Q  P  C  L  G  G  R  L  S  C  I  G  T  Q  G  K  E  W  M  R  W  S  S  L  R  Q  R  A  T  *  M  I  W  S  L  S  T  N  S  T  K  M  Q  *  Q  M  R  M  K  D  T  R  T  K  M  K  H  I  M  T  S  M  L  M  P  G  N  L  I  L  Y  F  K  S  N  S  S  F  Q  L  C  M  N  F  L  V  V  K  R  K  R  L  T  C  I  F  V  E  L  V  T  T  P  *  L  H  I  E  Y  L  L  L  L  L  S  N  L :   K  M  N  L  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0008G21.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28342" stop="28813"/>
                    <exon start="29727" stop="29996"/>
                    <exon start="30454" stop="31127"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1413</number_coding_nucleotides>
                  <number_encoded_amino_acids>471</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIDHSLSFHSRPSSLDDTLYLQKKIKMREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGAYHGESDIQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGTYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYRALSVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVADEDEGYEDEDEAYHD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="43151" PGL_stop="40047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43024" e_stop="42710"/>
            <exon e_start="42611" e_stop="42426"/>
            <exon e_start="42310" e_stop="42185"/>
            <exon e_start="41990" e_stop="41856"/>
            <exon e_start="41760" e_stop="41641"/>
            <exon e_start="41515" e_stop="41398"/>
            <exon e_start="41120" e_stop="41008"/>
            <exon e_start="40687" e_stop="40482"/>
            <exon e_start="40383" e_stop="40047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.907" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.858" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.838" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.846" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43024" e_stop="42710" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="0.907" acc_prob="0.997">
            <gDNA_intron_boundary i_start="42709" i_stop="42612" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42611" e_stop="42426" e_length="186"/>
          </exon>
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              <exon start="41120" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41702" stop="41641"/>
              <exon start="41515" stop="41398"/>
              <exon start="41120" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41702" stop="41641"/>
              <exon start="41515" stop="41398"/>
              <exon start="41120" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41701" stop="41641"/>
              <exon start="41515" stop="41398"/>
              <exon start="41120" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41685" stop="41641"/>
              <exon start="41515" stop="41398"/>
              <exon start="41120" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41485" stop="41398"/>
              <exon start="41120" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246249" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41454" stop="41398"/>
              <exon start="41120" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41446" stop="41398"/>
              <exon start="41120" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41442" stop="41398"/>
              <exon start="41120" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41415" stop="41398"/>
              <exon start="41120" stop="41008"/>
              <exon start="40687" stop="40546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41083" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41076" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41076" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288638" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41049" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41044" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250179" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41026" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40674" stop="40482"/>
              <exon start="40383" stop="40157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40576" stop="40482"/>
              <exon start="40383" stop="40157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40558" stop="40482"/>
              <exon start="40383" stop="40159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40509" stop="40482"/>
              <exon start="40383" stop="40054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40373" stop="40048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287448" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT : GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG : GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG : GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG : TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG : GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG : TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG : GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG : GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTTGAAGTTATCTTCTTTGTCCCAGAATGCTACTGTTGGAATGTATGCCTCCTGTTGCAGTAAATAATGATACACAATAATTAAAGAAGTTCAAATATATCTC</gDNA_template>
            <first_frame> L  M  L  N  Y  V  S  F  Q  Y  E  K  A  A  S  E  L  S  S  H  D  P  P  I  V  L  A  K  Y  D  A  N  D  E  A  N  R  E  L  S  K  Q  Y  E  I  Q  G  F  P  T  I  K  I  L  R  D  G  G  K  K  V  Q  D  Y  N  G  P  R  E  A  A  G  I  V  S  Y  L  K  K  Q  V  G  P  A  S  A  E  I  K  S  K  E  D  A  T  N  L  I  D  E  K  S  I  F  V  :  V  G  I  F  P  D  P  S  G  E  K  F  E  N  Y  L  T  L  A  E  K  L  R  G  E  F  D  F  A  H  T  V  D  A  K  H  L  P  R  G  G  P  V  N  K  P  T  L  R  L  L  K  P  F  D  E  L  F  V  D  F  E  :  D  F  D  V  D  A  M  E  K  F  I  S  E  S  S  I  P  V  V  T  I  F  D  N  D  P  N  N  H  P  Y  V  N  K  F  F  E  G  T  N  A  K  :  A  L  L  F  V  N  F  S  S  E  F  D  A  F  K  S  K  Y  N  D  V  A  V  I  Y  K  G  D  G  V  S  F  L  L  G  D  V  E  A  G  Q  G  A  F  E  :  Y  F  G  L  K  P  E  Q  A  P  V  I  I  I  M  D  A  D  E  Q  K  Y  I  K  D  H  V  E  P  D  A  I  A  A  Y  L  K  D  Y  K  :  E  G  K  L  K  P  H  V  K  S  E  P  I  P  E  V  N  D  E  P  V  K  V  V  V  R  D  T  L  Q  D  M  V  Y  K  S  G  K  N   : V  L  L  E  F  Y  A  P  W  C  G  H  C  K  S  L  A  P  I  L  D  E  V  A  V  S  F  E  S  D  P  D  V  L  I  A  K  L  :  D  A  T  A  N  D  L  P  K  G  D  F  D  V  Q  G  F  P  T  M  Y  F  R  S  A  S  G  N  L  S  Q  Y  N  G  E  R  T  K  E  A  I  I  E  F  I  E  K  N  R  G  K  P  A  Q  S  D  S  A  K  V  D  S  A  K  D  E  L  *  R :   T  L  G  T  L  C  T  G  G  F  K  F  C  W  K  H  C  V  S  G  E  F  D  L  P  P  D  Y  C  S  L  P  T  L  P  L  *  F  L  E  L  F  S  A  N  K  T  V  V  C  I  H  F  V  Y  R  M  *  L  D  Y  E  F  I  L  Y  L  L  R  S  S  P  T  L  *  Y  Q  Q  L  K  L  S  S  L  S  Q  N  A  T  V  G  M  Y  A  S  C  C  S  K  *  *  Y  T  I  I  K  E  V  Q  I  Y  L </first_frame>
            <second_frame>  *  C  *  I  M  F  L  S  S  M  K  K  L  P  Q  S  *  V  V  M  T  L  Q  L  F  *  L  S  M  M  Q  M  M  K  P  I  E  N  F  Q  N  S  T  R  S  R  V  S  Q  L  L  R  Y  *  E  M  E  E  R  K  F  K  T  I  T  V  L  V  K  Q  L  V  L  Y  P  T  *  R  N  K  W  V  L  H  L  L  K  S  S  R  R  K  M  P  Q  T  L  L  M  R  K  V  S  L  L :   L  V  Y  F  Q  T  P  P  E  R  N  S  R  T  I  *  R  *  L  K  N  C  E  A  S  S  I  L  L  T  L  L  M  L  N  T  S  L  G  V  D  Q  S  T  S  P  L  F  V  F  *  S  H  L  M  N  S  L  L  I  L  R :   T  L  M  S  M  Q  W  R  S  S  S  Q  N  L  V  F  L  L  L  L  F  L  T  M  T  Q  T  T  I  L  M  L  T  S  S  S  K  A  P  T  P  R :   H  C  Y  L  *  T  L  A  L  N  L  M  L  L  S  P  S  T  T  M  L  L  *  F  T  K  G  M  G  *  A  F  S  W  V  M  L  R  L  V  K  V  L  L  S :   T  S  D  *  S  R  N  R  H  L  *  S  S  *  W  T  L  M  N  K  S  I  L  R  T  M  W  N  L  M  P  L  L  L  T  *  R  I  T  R :   K  E  N  *  S  H  M  *  S  Q  S  P  S  L  K  S  M  T  N  L  L  R  W  L  L  G  I  P  S  R  I  W  F  T  N  R  E  K  M  :  C  C  *  S  S  M  H  L  G  V  A  T  A  R  V  W  L  Q  F  W  M  K  W  L  Y  H  L  K  A  I  L  M  F  S  L  Q  N  W :   T  Q  P  Q  M  I  S  R  K  V  T  L  M  F  R  D  S  L  L  C  T  S  D  P  P  L  V  T  C  H  S  T  M  V  R  E  Q  K  R  L  S  S  N  S  S  R  R  I  V  A  S  L  L  S  Q  T  L  P  K  S  I  Q  Q  R  M  N  F  R   : G  L  *  E  H  C  V  L  V  D  S  S  F  V  G  S  I  V  F  L  V  N  S  T  S  H  R  T  T  A  L  S  Q  R  F  R  C  S  F  W  S  F  S  A  P  I  K  R  L  Y  V  S  I  L  C  I  E  C  S  W  I  M  S  L  Y  Y  I  Y  *  E  V  L  Q  L  Y  S  I  S  S  *  S  Y  L  L  C  P  R  M  L  L  L  E  C  M  P  P  V  A  V  N  N  D  T  Q  *  L  K  K  F  K  Y  I   </second_frame>
            <third_frame>   N  V  K  L  C  F  F  P  V  *  K  S  C  L  R  A  E  *  S  *  P  S  N  C  S  S  *  V  *  C  K  *  *  S  Q  *  R  T  F  K  T  V  R  D  P  G  F  P  N  Y  *  D  I  E  R  W  R  K  E  S  S  R  L  *  R  S  S  *  S  S  W  Y  C  I  L  L  E  E  T  S  G  S  C  I  C  *  N  Q  V  E  G  R  C  H  K  P  Y  *  *  E  K  Y  L  C   : C  W  Y  I  S  R  P  L  R  R  E  I  R  E  L  F  N  A  S  *  K  T  A  R  R  V  R  F  C  S  H  C  *  C  *  T  P  P  S  G  W  T  S  Q  Q  A  H  S  S  S  S  K  A  I  *  *  T  L  C  *  F  *   : G  L  *  C  R  C  N  G  E  V  H  L  R  I  *  Y  S  C  C  Y  Y  F  *  Q  *  P  K  Q  P  S  L  C  *  Q  V  L  R  R  H  Q  R  Q   : G  I  A  I  C  E  L  *  L  *  I  *  C  F  *  V  Q  V  Q  R  C  C  C  D  L  Q  R  G  W  G  E  L  S  L  G  *  C  *  G  W  S  R  C  F  *   : V  L  R  T  E  A  G  T  G  T  C  D  H  H  N  G  R  *  *  T  K  V  Y  *  G  P  C  G  T  *  C  H  C  C  L  L  E  G  L  Q   : G  R  K  T  E  A  T  C  E  V  R  A  H  P  *  S  Q  *  R  T  C  *  G  G  C  *  G  Y  P  P  G  Y  G  L  Q  I  G  K  K  C :   A  V  R  V  L  C  T  L  V  W  P  L  Q  E  S  G  S  N  F  G  *  S  G  C  I  I  *  K  R  S  *  C  S  H  C  K  T   : G  R  N  R  K  *  S  P  E  R  *  L  *  C  S  G  I  P  Y  Y  V  L  Q  I  R  L  W  *  L  V  T  V  Q  W  *  E  N  K  R  G  Y  H  R  I  H  R  E  E  S  W  Q  A  C  S  V  R  L  C  Q  S  R  F  S  K  G  *  T  L  E  :  D  S  R  N  I  V  Y  W  W  I  Q  V  L  L  E  A  L  C  F  W  *  I  R  P  P  T  G  L  L  L  S  P  N  A  S  V  V  V  F  G  A  F  Q  R  Q  *  N  G  C  M  Y  P  F  C  V  S  N  V  A  G  L  *  V  Y  I  I  S  I  E  K  F  S  N  F  I  V  S  A  V  E  V  I  F  F  V  P  E  C  Y  C  W  N  V  C  L  L  L  Q  *  I  M  I  H  N  N  *  R  S  S  N  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0008G21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43024" stop="42710"/>
                    <exon start="42611" stop="42426"/>
                    <exon start="42310" stop="42185"/>
                    <exon start="41990" stop="41856"/>
                    <exon start="41760" stop="41641"/>
                    <exon start="41515" stop="41398"/>
                    <exon start="41120" stop="41008"/>
                    <exon start="40687" stop="40484"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1314</number_coding_nucleotides>
                  <number_encoded_amino_acids>438</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMLNYVSFQYEKAASELSSHDPPIVLAKYDANDEANRELSKQYEIQGFPTIKILRDGGKKVQDYNGPREAAGIVSYLKKQVGPASAEIKSKEDATNLIDEKSIFVVGIFPDPSGEKFENYLTLAEKLRGEFDFAHTVDAKHLPRGGPVNKPTLRLLKPFDELFVDFEDFDVDAMEKFISESSIPVVTIFDNDPNNHPYVNKFFEGTNAKALLFVNFSSEFDAFKSKYNDVAVIYKGDGVSFLLGDVEAGQGAFEYFGLKPEQAPVIIIMDADEQKYIKDHVEPDAIAAYLKDYKEGKLKPHVKSEPIPEVNDEPVKVVVRDTLQDMVYKSGKNVLLEFYAPWCGHCKSLAPILDEVAVSFESDPDVLIAKLDATANDLPKGDFDVQGFPTMYFRSASGNLSQYNGERTKEAIIEFIEKNRGKPAQSDSAKVDSAKDEL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0008G21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40375" stop="40178"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EHCVLVDSSFVGSIVFLVNSTSHRTTALSQRFRCSFWSFSAPIKRLYVSILCIECSWIMSLYYIY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43151" e_stop="43121"/>
            <exon e_start="42997" e_stop="42710"/>
            <exon e_start="42611" e_stop="42426"/>
            <exon e_start="42310" e_stop="42185"/>
            <exon e_start="41990" e_stop="41856"/>
            <exon e_start="41760" e_stop="41641"/>
            <exon e_start="41515" e_stop="41398"/>
            <exon e_start="41120" e_stop="41008"/>
            <exon e_start="40687" e_stop="40482"/>
            <exon e_start="40383" e_stop="40047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.917" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.858" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.838" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.846" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
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              <exon start="41120" stop="41065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41723" stop="41641"/>
              <exon start="41515" stop="41398"/>
              <exon start="41120" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41712" stop="41641"/>
              <exon start="41515" stop="41398"/>
              <exon start="41120" stop="41008"/>
              <exon start="40687" stop="40482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41703" stop="41641"/>
              <exon start="41515" stop="41398"/>
              <exon start="41120" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41702" stop="41641"/>
              <exon start="41515" stop="41398"/>
              <exon start="41120" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41702" stop="41641"/>
              <exon start="41515" stop="41398"/>
              <exon start="41120" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41701" stop="41641"/>
              <exon start="41515" stop="41398"/>
              <exon start="41120" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41685" stop="41641"/>
              <exon start="41515" stop="41398"/>
              <exon start="41120" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41485" stop="41398"/>
              <exon start="41120" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246249" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41454" stop="41398"/>
              <exon start="41120" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41446" stop="41398"/>
              <exon start="41120" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41442" stop="41398"/>
              <exon start="41120" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41415" stop="41398"/>
              <exon start="41120" stop="41008"/>
              <exon start="40687" stop="40546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41083" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41076" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41076" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288638" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41049" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41044" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250179" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41026" stop="41008"/>
              <exon start="40687" stop="40482"/>
              <exon start="40383" stop="40157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40674" stop="40482"/>
              <exon start="40383" stop="40157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40576" stop="40482"/>
              <exon start="40383" stop="40157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40558" stop="40482"/>
              <exon start="40383" stop="40159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40509" stop="40482"/>
              <exon start="40383" stop="40054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40373" stop="40048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287448" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGTGGACACTGTAAGAGTCTTGCTCCTGAG : TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT : GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG : GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG : GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG : TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG : GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG : TGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG : GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG : GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTTGAAGTTATCTTCTTTGTCCCAGAATGCTACTGTTGGAATGTATGCCTCCTGTTGCAGTAAATAATGATACACAATAATTAAAGAAGTTCAAATATATCTC</gDNA_template>
            <first_frame> V  W  T  L  *  E  S  C  S  *   : V  *  K  S  C  L  R  A  E  *  S  *  P  S  N  C  S  S  *  V  *  C  K  *  *  S  Q  *  R  T  F  K  T  V  R  D  P  G  F  P  N  Y  *  D  I  E  R  W  R  K  E  S  S  R  L  *  R  S  S  *  S  S  W  Y  C  I  L  L  E  E  T  S  G  S  C  I  C  *  N  Q  V  E  G  R  C  H  K  P  Y  *  *  E  K  Y  L  C   : C  W  Y  I  S  R  P  L  R  R  E  I  R  E  L  F  N  A  S  *  K  T  A  R  R  V  R  F  C  S  H  C  *  C  *  T  P  P  S  G  W  T  S  Q  Q  A  H  S  S  S  S  K  A  I  *  *  T  L  C  *  F  *   : G  L  *  C  R  C  N  G  E  V  H  L  R  I  *  Y  S  C  C  Y  Y  F  *  Q  *  P  K  Q  P  S  L  C  *  Q  V  L  R  R  H  Q  R  Q   : G  I  A  I  C  E  L  *  L  *  I  *  C  F  *  V  Q  V  Q  R  C  C  C  D  L  Q  R  G  W  G  E  L  S  L  G  *  C  *  G  W  S  R  C  F  *   : V  L  R  T  E  A  G  T  G  T  C  D  H  H  N  G  R  *  *  T  K  V  Y  *  G  P  C  G  T  *  C  H  C  C  L  L  E  G  L  Q   : G  R  K  T  E  A  T  C  E  V  R  A  H  P  *  S  Q  *  R  T  C  *  G  G  C  *  G  Y  P  P  G  Y  G  L  Q  I  G  K  K  C :   A  V  R  V  L  C  T  L  V  W  P  L  Q  E  S  G  S  N  F  G  *  S  G  C  I  I  *  K  R  S  *  C  S  H  C  K  T   : G  R  N  R  K  *  S  P  E  R  *  L  *  C  S  G  I  P  Y  Y  V  L  Q  I  R  L  W  *  L  V  T  V  Q  W  *  E  N  K  R  G  Y  H  R  I  H  R  E  E  S  W  Q  A  C  S  V  R  L  C  Q  S  R  F  S  K  G  *  T  L  E  :  D  S  R  N  I  V  Y  W  W  I  Q  V  L  L  E  A  L  C  F  W  *  I  R  P  P  T  G  L  L  L  S  P  N  A  S  V  V  V  F  G  A  F  Q  R  Q  *  N  G  C  M  Y  P  F  C  V  S  N  V  A  G  L  *  V  Y  I  I  S  I  E  K  F  S  N  F  I  V  S  A  V  E  V  I  F  F  V  P  E  C  Y  C  W  N  V  C  L  L  L  Q  *  I  M  I  H  N  N  *  R  S  S  N  I  S  </first_frame>
            <second_frame>  C  G  H  C  K  S  L  A  P  E  :  Y  E  K  A  A  S  E  L  S  S  H  D  P  P  I  V  L  A  K  Y  D  A  N  D  E  A  N  R  E  L  S  K  Q  Y  E  I  Q  G  F  P  T  I  K  I  L  R  D  G  G  K  K  V  Q  D  Y  N  G  P  R  E  A  A  G  I  V  S  Y  L  K  K  Q  V  G  P  A  S  A  E  I  K  S  K  E  D  A  T  N  L  I  D  E  K  S  I  F  V  :  V  G  I  F  P  D  P  S  G  E  K  F  E  N  Y  L  T  L  A  E  K  L  R  G  E  F  D  F  A  H  T  V  D  A  K  H  L  P  R  G  G  P  V  N  K  P  T  L  R  L  L  K  P  F  D  E  L  F  V  D  F  E  :  D  F  D  V  D  A  M  E  K  F  I  S  E  S  S  I  P  V  V  T  I  F  D  N  D  P  N  N  H  P  Y  V  N  K  F  F  E  G  T  N  A  K  :  A  L  L  F  V  N  F  S  S  E  F  D  A  F  K  S  K  Y  N  D  V  A  V  I  Y  K  G  D  G  V  S  F  L  L  G  D  V  E  A  G  Q  G  A  F  E  :  Y  F  G  L  K  P  E  Q  A  P  V  I  I  I  M  D  A  D  E  Q  K  Y  I  K  D  H  V  E  P  D  A  I  A  A  Y  L  K  D  Y  K  :  E  G  K  L  K  P  H  V  K  S  E  P  I  P  E  V  N  D  E  P  V  K  V  V  V  R  D  T  L  Q  D  M  V  Y  K  S  G  K  N   : V  L  L  E  F  Y  A  P  W  C  G  H  C  K  S  L  A  P  I  L  D  E  V  A  V  S  F  E  S  D  P  D  V  L  I  A  K  L  :  D  A  T  A  N  D  L  P  K  G  D  F  D  V  Q  G  F  P  T  M  Y  F  R  S  A  S  G  N  L  S  Q  Y  N  G  E  R  T  K  E  A  I  I  E  F  I  E  K  N  R  G  K  P  A  Q  S  D  S  A  K  V  D  S  A  K  D  E  L  *  R :   T  L  G  T  L  C  T  G  G  F  K  F  C  W  K  H  C  V  S  G  E  F  D  L  P  P  D  Y  C  S  L  P  T  L  P  L  *  F  L  E  L  F  S  A  N  K  T  V  V  C  I  H  F  V  Y  R  M  *  L  D  Y  E  F  I  L  Y  L  L  R  S  S  P  T  L  *  Y  Q  Q  L  K  L  S  S  L  S  Q  N  A  T  V  G  M  Y  A  S  C  C  S  K  *  *  Y  T  I  I  K  E  V  Q  I  Y  L </second_frame>
            <third_frame>   V  D  T  V  R  V  L  L  L  S :   M  K  K  L  P  Q  S  *  V  V  M  T  L  Q  L  F  *  L  S  M  M  Q  M  M  K  P  I  E  N  F  Q  N  S  T  R  S  R  V  S  Q  L  L  R  Y  *  E  M  E  E  R  K  F  K  T  I  T  V  L  V  K  Q  L  V  L  Y  P  T  *  R  N  K  W  V  L  H  L  L  K  S  S  R  R  K  M  P  Q  T  L  L  M  R  K  V  S  L  L :   L  V  Y  F  Q  T  P  P  E  R  N  S  R  T  I  *  R  *  L  K  N  C  E  A  S  S  I  L  L  T  L  L  M  L  N  T  S  L  G  V  D  Q  S  T  S  P  L  F  V  F  *  S  H  L  M  N  S  L  L  I  L  R :   T  L  M  S  M  Q  W  R  S  S  S  Q  N  L  V  F  L  L  L  L  F  L  T  M  T  Q  T  T  I  L  M  L  T  S  S  S  K  A  P  T  P  R :   H  C  Y  L  *  T  L  A  L  N  L  M  L  L  S  P  S  T  T  M  L  L  *  F  T  K  G  M  G  *  A  F  S  W  V  M  L  R  L  V  K  V  L  L  S :   T  S  D  *  S  R  N  R  H  L  *  S  S  *  W  T  L  M  N  K  S  I  L  R  T  M  W  N  L  M  P  L  L  L  T  *  R  I  T  R :   K  E  N  *  S  H  M  *  S  Q  S  P  S  L  K  S  M  T  N  L  L  R  W  L  L  G  I  P  S  R  I  W  F  T  N  R  E  K  M  :  C  C  *  S  S  M  H  L  G  V  A  T  A  R  V  W  L  Q  F  W  M  K  W  L  Y  H  L  K  A  I  L  M  F  S  L  Q  N  W :   T  Q  P  Q  M  I  S  R  K  V  T  L  M  F  R  D  S  L  L  C  T  S  D  P  P  L  V  T  C  H  S  T  M  V  R  E  Q  K  R  L  S  S  N  S  S  R  R  I  V  A  S  L  L  S  Q  T  L  P  K  S  I  Q  Q  R  M  N  F  R   : G  L  *  E  H  C  V  L  V  D  S  S  F  V  G  S  I  V  F  L  V  N  S  T  S  H  R  T  T  A  L  S  Q  R  F  R  C  S  F  W  S  F  S  A  P  I  K  R  L  Y  V  S  I  L  C  I  E  C  S  W  I  M  S  L  Y  Y  I  Y  *  E  V  L  Q  L  Y  S  I  S  S  *  S  Y  L  L  C  P  R  M  L  L  L  E  C  M  P  P  V  A  V  N  N  D  T  Q  *  L  K  K  F  K  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0008G21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43150" stop="43121"/>
                    <exon start="42997" stop="42710"/>
                    <exon start="42611" stop="42426"/>
                    <exon start="42310" stop="42185"/>
                    <exon start="41990" stop="41856"/>
                    <exon start="41760" stop="41641"/>
                    <exon start="41515" stop="41398"/>
                    <exon start="41120" stop="41008"/>
                    <exon start="40687" stop="40484"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1317</number_coding_nucleotides>
                  <number_encoded_amino_acids>439</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CGHCKSLAPEYEKAASELSSHDPPIVLAKYDANDEANRELSKQYEIQGFPTIKILRDGGKKVQDYNGPREAAGIVSYLKKQVGPASAEIKSKEDATNLIDEKSIFVVGIFPDPSGEKFENYLTLAEKLRGEFDFAHTVDAKHLPRGGPVNKPTLRLLKPFDELFVDFEDFDVDAMEKFISESSIPVVTIFDNDPNNHPYVNKFFEGTNAKALLFVNFSSEFDAFKSKYNDVAVIYKGDGVSFLLGDVEAGQGAFEYFGLKPEQAPVIIIMDADEQKYIKDHVEPDAIAAYLKDYKEGKLKPHVKSEPIPEVNDEPVKVVVRDTLQDMVYKSGKNVLLEFYAPWCGHCKSLAPILDEVAVSFESDPDVLIAKLDATANDLPKGDFDVQGFPTMYFRSASGNLSQYNGERTKEAIIEFIEKNRGKPAQSDSAKVDSAKDEL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0008G21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40375" stop="40178"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EHCVLVDSSFVGSIVFLVNSTSHRTTALSQRFRCSFWSFSAPIKRLYVSILCIECSWIMSLYYIY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="40929" e_stop="40048"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="40929" e_stop="40048" e_length="882"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40929" stop="40146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40828" stop="40162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40373" stop="40048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287448" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTTGAAGTTATCTTCTTTGTCCCAGAATGCTACTGTTGGAATGTATGCCTCCTGTTGCAGTAAATAATGATACACAATAATTAAAGAAGTTCAAATATATCT</gDNA_template>
            <first_frame> H  N  N  Q  E  R  M  C  R  I  R  I  G  F  L  V  *  K  S  E  R  T  G  W  T  F  Y  L  *  C  Y  G  F  R  C  *  R  D  F  *  *  K  T  S  V  K  C  I  K  K  E  G  L  Y  G  L  N  T  I  S  S  C  N  A  Q  D  M  Y  L  L  S  F  P  L  T  C  F  L  I  Y  R  T  Q  P  Q  M  I  S  R  K  V  T  L  M  F  R  D  S  L  L  C  T  S  D  P  P  L  V  T  C  H  S  T  M  V  R  E  Q  K  R  L  S  S  N  S  S  R  R  I  V  A  S  L  L  S  Q  T  L  P  K  S  I  Q  Q  R  M  N  F  R  G  L  V  L  F  L  K  A  S  I  V  I  S  A  I  I  G  S  L  C  Y  S  N  C  N  L  Y  *  S  P  L  I  Q  D  S  R  N  I  V  Y  W  W  I  Q  V  L  L  E  A  L  C  F  W  *  I  R  P  P  T  G  L  L  L  S  P  N  A  S  V  V  V  F  G  A  F  Q  R  Q  *  N  G  C  M  Y  P  F  C  V  S  N  V  A  G  L  *  V  Y  I  I  S  I  E  K  F  S  N  F  I  V  S  A  V  E  V  I  F  F  V  P  E  C  Y  C  W  N  V  C  L  L  L  Q  *  I  M  I  H  N  N  *  R  S  S  N  I  S </first_frame>
            <second_frame>  I  I  I  K  K  E  C  V  E  L  E  S  G  F  *  Y  K  N  Q  K  E  R  G  G  H  F  I  F  D  V  M  D  F  V  V  R  E  I  F  S  R  K  H  L  *  S  V  S  K  K  K  V  C  M  A  *  T  R  L  A  V  V  M  H  R  T  C  I  C  C  H  F  L  S  P  A  S  S  F  T  G  R  N  R  K  *  S  P  E  R  *  L  *  C  S  G  I  P  Y  Y  V  L  Q  I  R  L  W  *  L  V  T  V  Q  W  *  E  N  K  R  G  Y  H  R  I  H  R  E  E  S  W  Q  A  C  S  V  R  L  C  Q  S  R  F  S  K  G  *  T  L  E  V  W  F  S  S  L  K  H  Q  L  *  Y  L  P  L  L  V  L  C  A  T  V  I  V  I  Y  I  D  L  L  L  F  R  T  L  G  T  L  C  T  G  G  F  K  F  C  W  K  H  C  V  S  G  E  F  D  L  P  P  D  Y  C  S  L  P  T  L  P  L  *  F  L  E  L  F  S  A  N  K  T  V  V  C  I  H  F  V  Y  R  M  *  L  D  Y  E  F  I  L  Y  L  L  R  S  S  P  T  L  *  Y  Q  Q  L  K  L  S  S  L  S  Q  N  A  T  V  G  M  Y  A  S  C  C  S  K  *  *  Y  T  I  I  K  E  V  Q  I  Y   </second_frame>
            <third_frame>   *  *  S  R  K  N  V  *  N  *  N  R  V  F  S  I  K  I  R  K  N  G  V  D  I  L  S  L  M  L  W  I  S  L  L  E  R  F  L  V  E  N  I  C  K  V  Y  Q  K  R  R  F  V  W  L  K  H  D  *  Q  L  *  C  T  G  H  V  F  V  V  I  S  S  H  L  L  P  H  L  Q  D  A  T  A  N  D  L  P  K  G  D  F  D  V  Q  G  F  P  T  M  Y  F  R  S  A  S  G  N  L  S  Q  Y  N  G  E  R  T  K  E  A  I  I  E  F  I  E  K  N  R  G  K  P  A  Q  S  D  S  A  K  V  D  S  A  K  D  E  L  *  R  F  G  S  L  P  *  S  I  N  C  D  I  C  H  Y  W  F  F  V  L  Q  *  L  *  F  I  L  I  S  S  Y  S  G  L  *  E  H  C  V  L  V  D  S  S  F  V  G  S  I  V  F  L  V  N  S  T  S  H  R  T  T  A  L  S  Q  R  F  R  C  S  F  W  S  F  S  A  P  I  K  R  L  Y  V  S  I  L  C  I  E  C  S  W  I  M  S  L  Y  Y  I  Y  *  E  V  L  Q  L  Y  S  I  S  S  *  S  Y  L  L  C  P  R  M  L  L  L  E  C  M  P  P  V  A  V  N  N  D  T  Q  *  L  K  K  F  K  Y  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0008G21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40806" stop="40399"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTSVKCIKKEGLYGLNTISSCNAQDMYLLSFPLTCFLIYRTQPQMISRKVTLMFRDSLLCTSDPPLVTCHSTMVREQKRLSSNSSRRIVASLLSQTLPKSIQQRMNFRGLVLFLKASIVISAIIGSLCYSNCNLY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0008G21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40375" stop="40178"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EHCVLVDSSFVGSIVFLVNSTSHRTTALSQRFRCSFWSFSAPIKRLYVSILCIECSWIMSLYYIY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="41773" e_stop="40958"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="41773" e_stop="40958" e_length="816"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41773" stop="40958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41772" stop="41278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288667" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTA</gDNA_template>
            <first_frame> F  G  I  A  V  L  R  T  E  A  G  T  G  T  C  D  H  H  N  G  R  *  *  T  K  V  Y  *  G  P  C  G  T  *  C  H  C  C  L  L  E  G  L  Q  G  D  A  S  S  S  F  S  W  I  Y  F  G  M  K  A  L  L  I  V  N  N  I  L  H  G  R  K  G  L  L  T  F  F  L  *  F  S  T  L  L  Q  E  G  K  L  K  P  H  V  K  S  E  P  I  P  E  V  N  D  E  P  V  K  V  V  V  R  D  T  L  Q  D  M  V  Y  K  S  G  K  N  G  A  C  L  S  I  F  *  S  L  F  D  V  L  V  K  K  E  L  F  L  C  C  T  I  S  F  S  L  F  G  V  Y  L  H  F  F  T  S  V  *  G  R  D  E  E  L  D  V  V  N  *  L  I  V  E  L  L  Y  V  V  G  E  R  G  S  S  H  Q  L  I  A  R  G  F  D  F  N  N  S  C  A  L  L  N  Y  Y  S  F  C  L  L  S  A  V  R  V  L  C  T  L  V  W  P  L  Q  E  S  G  S  N  F  G  *  S  G  C  I  I  *  K  R  S  *  C  S  H  C  K  T  G  K  N  F  F  H  K  L  N  M  D  I  *  C  M  Y  L </first_frame>
            <second_frame>  L  E  L  Q  Y  F  G  L  K  P  E  Q  A  P  V  I  I  I  M  D  A  D  E  Q  K  Y  I  K  D  H  V  E  P  D  A  I  A  A  Y  L  K  D  Y  K  V  M  H  P  L  L  F  L  G  Y  I  L  E  *  K  R  C  *  L  *  T  I  F  C  T  E  G  K  A  Y  *  P  F  S  S  N  F  P  H  C  Y  R  K  E  N  *  S  H  M  *  S  Q  S  P  S  L  K  S  M  T  N  L  L  R  W  L  L  G  I  P  S  R  I  W  F  T  N  R  E  K  M  V  R  V  C  Q  Y  F  N  L  Y  S  M  S  W  L  R  K  S  C  F  F  V  V  P  F  R  S  P  S  L  V  F  T  C  I  S  L  L  V  C  K  V  V  M  R  S  W  M  S  *  I  N  *  L  W  N  Y  Y  T  *  *  E  K  E  G  A  V  I  S  *  L  P  A  G  L  T  L  T  I  V  V  L  S  *  I  I  I  L  F  V  C  S  V  L  L  E  F  Y  A  P  W  C  G  H  C  K  S  L  A  P  I  L  D  E  V  A  V  S  F  E  S  D  P  D  V  L  I  A  K  L  V  R  T  F  F  I  N  *  T  W  I  F  D  A  C  I   </second_frame>
            <third_frame>   W  N  C  S  T  S  D  *  S  R  N  R  H  L  *  S  S  *  W  T  L  M  N  K  S  I  L  R  T  M  W  N  L  M  P  L  L  L  T  *  R  I  T  R  *  C  I  L  F  F  F  L  D  I  F  W  N  E  S  V  V  N  C  E  Q  Y  S  A  R  K  E  R  L  T  N  L  F  P  L  I  F  H  I  V  T  G  R  K  T  E  A  T  C  E  V  R  A  H  P  *  S  Q  *  R  T  C  *  G  G  C  *  G  Y  P  P  G  Y  G  L  Q  I  G  K  K  W  C  V  S  V  N  I  L  I  F  I  R  C  L  G  *  E  R  V  V  S  L  L  Y  H  F  V  L  P  L  W  C  L  L  A  F  L  Y  *  C  V  R  S  *  *  G  V  G  C  R  K  L  T  D  C  G  T  I  I  R  S  R  R  K  R  E  Q  S  S  A  N  C  P  R  V  *  L  *  Q  *  L  C  S  P  K  L  L  F  F  L  S  A  Q  C  C  *  S  S  M  H  L  G  V  A  T  A  R  V  W  L  Q  F  W  M  K  W  L  Y  H  L  K  A  I  L  M  F  S  L  Q  N  W  *  E  L  F  S  *  T  K  H  G  Y  L  M  H  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0008G21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41490" stop="41248"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQSPSLKSMTNLLRWLLGIPSRIWFTNREKMVRVCQYFNLYSMSWLRKSCFFVVPFRSPSLVFTCISLLVCKVVMRSWMS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="46357" PGL_stop="51454"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46357" e_stop="46859"/>
            <exon e_start="49598" e_stop="49663"/>
            <exon e_start="49761" e_stop="49895"/>
            <exon e_start="50029" e_stop="50094"/>
            <exon e_start="50434" e_stop="50619"/>
            <exon e_start="50774" e_stop="50860"/>
            <exon e_start="50938" e_stop="51051"/>
            <exon e_start="51197" e_stop="51321"/>
            <exon e_start="51412" e_stop="51454"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.697" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46357" e_stop="46859" e_length="503"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="46860" i_stop="49597" i_length="2738"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49598" e_stop="49663" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.697">
            <gDNA_intron_boundary i_start="49664" i_stop="49760" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49761" e_stop="49895" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49896" i_stop="50028" i_length="133"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50029" e_stop="50094" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="50095" i_stop="50433" i_length="339"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50434" e_stop="50619" e_length="186"/>
          </exon>
          <intron i_serial="5" don_prob="0.950" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50620" i_stop="50773" i_length="154"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="50774" e_stop="50860" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.882" acc_prob="0.992">
            <gDNA_intron_boundary i_start="50861" i_stop="50937" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="50938" e_stop="51051" e_length="114"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.945">
            <gDNA_intron_boundary i_start="51052" i_stop="51196" i_length="145"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="51197" e_stop="51321" e_length="125"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="51322" i_stop="51411" i_length="90"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="51412" e_stop="51454" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46357" stop="46859"/>
              <exon start="49598" stop="49647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49620" stop="49663"/>
              <exon start="49761" stop="49895"/>
              <exon start="50029" stop="50094"/>
              <exon start="50434" stop="50619"/>
              <exon start="50774" stop="50860"/>
              <exon start="50938" stop="51051"/>
              <exon start="51197" stop="51321"/>
              <exon start="51412" stop="51454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49809" stop="49895"/>
              <exon start="50029" stop="50094"/>
              <exon start="50434" stop="50619"/>
              <exon start="50774" stop="50860"/>
              <exon start="50938" stop="51051"/>
              <exon start="51197" stop="51211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330721" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAAGATAATTGGTGGTGGTCCAAGGGCAGGAAATTGAGGTGGGAACCGATAGTTCAAGCTCAAGAAATTGGGGTTTTGTTATTGCAATTGGGGATTGTGATGTTTGTTATGAGATTACTAAGACCCGGTTTGCCATTACCCGGGTCGGATCCTAGAGCTCCGACAATGTTTGTAACTGTTCCATATAGTGAGTTTTTGAGTAAGATAAATAGTAATCAGGTGCAGAAAGTTGAGGTTGATGGTGTACATATAATGTTCAAATTGAAGAGTGAAGTGAGTAGTAGTGTAATAGAGACTGAGGTTGTGAATGTGAATGAAAATGGAAATAGTAAGTTGCAAGATTCTGAGGCAGTGATAAGGAGTGTAACTCCTACAAAGAAAATTGTGTATACTACCACGAGGCCGAGTGATATAAAGACCCCTTATGAGAAAATGCTTGAGAATGATGTTGAGTTTGGTTCTCCCGATAAACGGTCTGGTGGATTCATGAACTCTGCACTG : ATAGCATTATTTTATATTGCTGTACTAGCGGGGCTTCTTCATCGCTTCCCAGTGAATTTTTCTCAG : AGCACAGCTGGCCAACTCAGAAATCGCAAGTCAGGGGGTTCAGGTGGCACAAAAGTGTCTGAACTAGGGGAAACTATCACATTTGCTGATGTTGCAGGCGTTGACGAGGCTAAGGAGGAGCTAGAAGAAATTGTG : GAATTTCTTAGAAATCCAGATAAGTATGTACGGCTTGGTGCACGTCCTCCTCGTGGTGTTCTACTG : GTTGGTCTCCCCGGGACAGGAAAGACACTTCTAGCAAAGGCTGTTGCTGGGGAAGCTGAGGTTCCTTTTATCAGTTGTTCTGCAAGTGAGTTTGTAGAATTGTATGTAGGAATGGGAGCATCACGCGTCCGTGACCTGTTTGCACGGGCAAAGAAGGAGGCACCTTCAATAATTTTTATCGATGAG : ATAGATGCTGTGGCAAAAAGCCGTGATGGAAAATTCCGCATTGTAAGCAATGATGAAAGAGAGCAGACATTGAACCAACTACTCACT : GAGATGGACGGATTTGACAGTAATTCTGCTGTAATTGTTCTTGGAGCAACAAATCGCTCTGATGTCTTAGACCCTGCTCTTCGCCGACCTGGGAGATTTGACCGTGTTGTAATG : GTGGAAGCGCCTGATAGGTGTGGAAGAGAAGCTATCTTAAAGGTACATGTCTCCAAGAAAGAACTTCCCTTGGCACAAGATGTTGATCTTGGTAACATCGCTTCTATGACTACTGGTTTTACGGG : GGCAGATCTTGCAAATCTGGTGAATGAAGCTGCTCTGTTGGCA</gDNA_template>
            <first_frame> G  K  I  I  G  G  G  P  R  A  G  N  *  G  G  N  R  *  F  K  L  K  K  L  G  F  C  Y  C  N  W  G  L  *  C  L  L  *  D  Y  *  D  P  V  C  H  Y  P  G  R  I  L  E  L  R  Q  C  L  *  L  F  H  I  V  S  F  *  V  R  *  I  V  I  R  C  R  K  L  R  L  M  V  Y  I  *  C  S  N  *  R  V  K  *  V  V  V  *  *  R  L  R  L  *  M  *  M  K  M  E  I  V  S  C  K  I  L  R  Q  *  *  G  V  *  L  L  Q  R  K  L  C  I  L  P  R  G  R  V  I  *  R  P  L  M  R  K  C  L  R  M  M  L  S  L  V  L  P  I  N  G  L  V  D  S  *  T  L  H  * :   *  H  Y  F  I  L  L  Y  *  R  G  F  F  I  A  S  Q  *  I  F  L  R :   A  Q  L  A  N  S  E  I  A  S  Q  G  V  Q  V  A  Q  K  C  L  N  *  G  K  L  S  H  L  L  M  L  Q  A  L  T  R  L  R  R  S  *  K  K  L  W :   N  F  L  E  I  Q  I  S  M  Y  G  L  V  H  V  L  L  V  V  F  Y  W :   L  V  S  P  G  Q  E  R  H  F  *  Q  R  L  L  L  G  K  L  R  F  L  L  S  V  V  L  Q  V  S  L  *  N  C  M  *  E  W  E  H  H  A  S  V  T  C  L  H  G  Q  R  R  R  H  L  Q  *  F  L  S  M  R :   *  M  L  W  Q  K  A  V  M  E  N  S  A  L  *  A  M  M  K  E  S  R  H  *  T  N  Y  S  L :   R  W  T  D  L  T  V  I  L  L  *  L  F  L  E  Q  Q  I  A  L  M  S  *  T  L  L  F  A  D  L  G  D  L  T  V  L  *  W :   W  K  R  L  I  G  V  E  E  K  L  S  *  R  Y  M  S  P  R  K  N  F  P  W  H  K  M  L  I  L  V  T  S  L  L  *  L  L  V  L  R   : G  Q  I  L  Q  I  W  *  M  K  L  L  C  W   </first_frame>
            <second_frame>  E  R  *  L  V  V  V  Q  G  Q  E  I  E  V  G  T  D  S  S  S  S  R  N  W  G  F  V  I  A  I  G  D  C  D  V  C  Y  E  I  T  K  T  R  F  A  I  T  R  V  G  S  *  S  S  D  N  V  C  N  C  S  I  *  *  V  F  E  *  D  K  *  *  S  G  A  E  S  *  G  *  W  C  T  Y  N  V  Q  I  E  E  *  S  E  *  *  C  N  R  D  *  G  C  E  C  E  *  K  W  K  *  *  V  A  R  F  *  G  S  D  K  E  C  N  S  Y  K  E  N  C  V  Y  Y  H  E  A  E  *  Y  K  D  P  L  *  E  N  A  *  E  *  C  *  V  W  F  S  R  *  T  V  W  W  I  H  E  L  C  T   : D  S  I  I  L  Y  C  C  T  S  G  A  S  S  S  L  P  S  E  F  F  S   : E  H  S  W  P  T  Q  K  S  Q  V  R  G  F  R  W  H  K  S  V  *  T  R  G  N  Y  H  I  C  *  C  C  R  R  *  R  G  *  G  G  A  R  R  N  C   : G  I  S  *  K  S  R  *  V  C  T  A  W  C  T  S  S  S  W  C  S  T   : G  W  S  P  R  D  R  K  D  T  S  S  K  G  C  C  W  G  S  *  G  S  F  Y  Q  L  F  C  K  *  V  C  R  I  V  C  R  N  G  S  I  T  R  P  *  P  V  C  T  G  K  E  G  G  T  F  N  N  F  Y  R  *   : D  R  C  C  G  K  K  P  *  W  K  I  P  H  C  K  Q  *  *  K  R  A  D  I  E  P  T  T  H   : *  D  G  R  I  *  Q  *  F  C  C  N  C  S  W  S  N  K  S  L  *  C  L  R  P  C  S  S  P  T  W  E  I  *  P  C  C  N   : G  G  S  A  *  *  V  W  K  R  S  Y  L  K  G  T  C  L  Q  E  R  T  S  L  G  T  R  C  *  S  W  *  H  R  F  Y  D  Y  W  F  Y  G  :  G  R  S  C  K  S  G  E  *  S  C  S  V  G  </second_frame>
            <third_frame>   K  D  N  W  W  W  S  K  G  R  K  L  R  W  E  P  I  V  Q  A  Q  E  I  G  V  L  L  L  Q  L  G  I  V  M  F  V  M  R  L  L  R  P  G  L  P  L  P  G  S  D  P  R  A  P  T  M  F  V  T  V  P  Y  S  E  F  L  S  K  I  N  S  N  Q  V  Q  K  V  E  V  D  G  V  H  I  M  F  K  L  K  S  E  V  S  S  S  V  I  E  T  E  V  V  N  V  N  E  N  G  N  S  K  L  Q  D  S  E  A  V  I  R  S  V  T  P  T  K  K  I  V  Y  T  T  T  R  P  S  D  I  K  T  P  Y  E  K  M  L  E  N  D  V  E  F  G  S  P  D  K  R  S  G  G  F  M  N  S  A  L  :  I  A  L  F  Y  I  A  V  L  A  G  L  L  H  R  F  P  V  N  F  S  Q  :  S  T  A  G  Q  L  R  N  R  K  S  G  G  S  G  G  T  K  V  S  E  L  G  E  T  I  T  F  A  D  V  A  G  V  D  E  A  K  E  E  L  E  E  I  V  :  E  F  L  R  N  P  D  K  Y  V  R  L  G  A  R  P  P  R  G  V  L  L  :  V  G  L  P  G  T  G  K  T  L  L  A  K  A  V  A  G  E  A  E  V  P  F  I  S  C  S  A  S  E  F  V  E  L  Y  V  G  M  G  A  S  R  V  R  D  L  F  A  R  A  K  K  E  A  P  S  I  I  F  I  D  E  :  I  D  A  V  A  K  S  R  D  G  K  F  R  I  V  S  N  D  E  R  E  Q  T  L  N  Q  L  L  T  :  E  M  D  G  F  D  S  N  S  A  V  I  V  L  G  A  T  N  R  S  D  V  L  D  P  A  L  R  R  P  G  R  F  D  R  V  V  M  :  V  E  A  P  D  R  C  G  R  E  A  I  L  K  V  H  V  S  K  K  E  L  P  L  A  Q  D  V  D  L  G  N  I  A  S  M  T  T  G  F  T  G :   A  D  L  A  N  L  V  N  E  A  A  L  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0008G21.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46359" stop="46859"/>
                    <exon start="49598" stop="49663"/>
                    <exon start="49761" stop="49895"/>
                    <exon start="50029" stop="50094"/>
                    <exon start="50434" stop="50619"/>
                    <exon start="50774" stop="50860"/>
                    <exon start="50938" stop="51051"/>
                    <exon start="51197" stop="51321"/>
                    <exon start="51412" stop="51454"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1323</number_coding_nucleotides>
                  <number_encoded_amino_acids>441</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDNWWWSKGRKLRWEPIVQAQEIGVLLLQLGIVMFVMRLLRPGLPLPGSDPRAPTMFVTVPYSEFLSKINSNQVQKVEVDGVHIMFKLKSEVSSSVIETEVVNVNENGNSKLQDSEAVIRSVTPTKKIVYTTTRPSDIKTPYEKMLENDVEFGSPDKRSGGFMNSALIALFYIAVLAGLLHRFPVNFSQSTAGQLRNRKSGGSGGTKVSELGETITFADVAGVDEAKEELEEIVEFLRNPDKYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGKFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVEAPDRCGREAILKVHVSKKELPLAQDVDLGNIASMTTGFTGADLANLVNEAALLA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="52440" PGL_stop="55615"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52440" e_stop="52507"/>
            <exon e_start="53825" e_stop="54145"/>
            <exon e_start="54280" e_stop="54403"/>
            <exon e_start="54889" e_stop="55615"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.710" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52440" e_stop="52507" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52508" i_stop="53824" i_length="1317"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53825" e_stop="54145" e_length="321"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.710">
            <gDNA_intron_boundary i_start="54146" i_stop="54279" i_length="134"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54280" e_stop="54403" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54404" i_stop="54888" i_length="485"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54889" e_stop="55615" e_length="727"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52440" stop="52507"/>
              <exon start="53825" stop="54127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53898" stop="54145"/>
              <exon start="54280" stop="54403"/>
              <exon start="54889" stop="55036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54015" stop="54145"/>
              <exon start="54280" stop="54403"/>
              <exon start="54889" stop="55536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54015" stop="54145"/>
              <exon start="54280" stop="54403"/>
              <exon start="54889" stop="55535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54028" stop="54145"/>
              <exon start="54280" stop="54403"/>
              <exon start="54889" stop="55536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54031" stop="54145"/>
              <exon start="54280" stop="54403"/>
              <exon start="54889" stop="55536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54031" stop="54145"/>
              <exon start="54280" stop="54403"/>
              <exon start="54889" stop="55536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54031" stop="54145"/>
              <exon start="54280" stop="54403"/>
              <exon start="54889" stop="55478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54046" stop="54145"/>
              <exon start="54280" stop="54403"/>
              <exon start="54889" stop="55035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54363" stop="54403"/>
              <exon start="54889" stop="55571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54889" stop="55545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55062" stop="55615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55143" stop="55545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55143" stop="55542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55171" stop="55615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55285" stop="55615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220170" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGAAGCAGGGCACGCAGTAGTTGGGACTGCTGTTGCAAATCTTCTTTCCGGGCAGCCACGGGTTGAG : AAGCTGAGCATATTGCCAAGATCTGGAGGGGCTTTAGGATTTACTTATATTCCTCCAACCAATGAGGACAGATATCTGCTCTTTGTTGATGAATTGCGTGGGAGGTTGGTCACTCTTCTTGGTGGACGTGCTGCGGAAGAAGTATTGTACTCTGGACGTGTATCTACTGGTGCTCTTGATGATATACGCAGAGCTACAGACATGGCCTACAAGGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAG : GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAG : AGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATAATCTTTGACTTGTGTAAAATTACAAGTATTGGATGAGGTAATAGTGACAATTCTTTGTGCTTGTGGTTAA</gDNA_template>
            <first_frame> M  K  Q  G  T  Q  *  L  G  L  L  L  Q  I  F  F  P  G  S  H  G  L  R :   S  *  A  Y  C  Q  D  L  E  G  L  *  D  L  L  I  F  L  Q  P  M  R  T  D  I  C  S  L  L  M  N  C  V  G  G  W  S  L  F  L  V  D  V  L  R  K  K  Y  C  T  L  D  V  Y  L  L  V  L  L  M  I  Y  A  E  L  Q  T  W  P  T  R  Q  W  L  N  M  V  L  V  R  P  L  A  L  S  Q  W  Q  H  F  L  E  V  G  W  M  M  V  D  P  C  P  G  E  G  T  R :   G  I  L  L  I  L  F  K  E  R  S  R  L  Y  C  S  L  H  L  I  L  H  S  V  L  Y  V  L  I  P  K  F  L  R  G  W  E  L  N  W  K  :  R  M  R  K  *  K  V  S  N  Y  K  N  G  *  A  W  S  L  H  Q  Q  N  L  I  F  S  *  R  A  K  K  D  L  Y  F  H  C  K  Q  A  L  D  D  R  K  C  K  L  N  P  V  N  R  V  Q  K  R  I  S  N  K  D  F  H  A  F  I  C  A  L  *  G  N  K  A  I  F  L  N  Q  M  G  I  T  C  W  H  P  D  S  V  I  L  H  V  L  V  R  *  I  D  S  Y  L  T  P  T  N  T  I  V  I  Y  H  D  H  R  L  L  T  R  R  E  G  M  R  K  R  S  S  Q  E  F  L  G  S  L  E  V  K  *  K  *  A  R  D  Q  S  D  V  C  W  Y  F  L  L  H  H  L  Y  M  C  P  I  I  L  S  N  Y  T  R  I  N  T  L  I  L  *  Y  T  S  V  L  Q  L  T  K  N  *  S  M  S  N  V  V  G  E  G  V  K  L  C  I  Q  C  N  L  S  D  Y  E  T  K  F  Q  *  V  A  I  I  F  D  L  C  K  I  T  S  I  G  *  G  N  S  D  N  S  L  C  L  W  L  </first_frame>
            <second_frame>  *  S  R  A  R  S  S  W  D  C  C  C  K  S  S  F  R  A  A  T  G  *   : E  A  E  H  I  A  K  I  W  R  G  F  R  I  Y  L  Y  S  S  N  Q  *  G  Q  I  S  A  L  C  *  *  I  A  W  E  V  G  H  S  S  W  W  T  C  C  G  R  S  I  V  L  W  T  C  I  Y  W  C  S  *  *  Y  T  Q  S  Y  R  H  G  L  Q  G  S  G  *  I  W  S  *  S  D  H  W  P  Y  L  S  G  N  T  F  W  R  W  D  G  *  W  W  I  H  V  L  G  K  G  P   : G  A  S  C  *  S  C  S  K  R  G  Q  G  F  T  A  V  C  T  *  Y  C  T  L  C  C  T  C  *  S  Q  S  S  *  G  V  G  S  S  I  G  R :   E  *  E  S  R  R  *  A  T  T  R  M  V  E  H  G  R  C  T  S  R  T  *  F  F  H  K  G  Q  R  R  I  F  T  S  T  A  S  R  L  W  M  T  E  S  A  S  L  T  Q  S  T  E  Y  K  N  E  F  R  I  R  I  S  T  P  S  S  V  L  S  R  E  T  K  L  Y  S  *  T  R  W  A  S  L  A  G  I  Q  T  A  *  F  C  M  C  *  *  G  K  L  T  A  T  *  L  L  Q  T  P  L  L  Y  T  T  I  T  D  C  *  L  E  E  K  A  C  A  K  D  L  A  K  S  F  L  V  L  *  R  *  N  E  N  R  L  V  I  R  V  M  S  V  G  I  F  F  Y  I  T  C  T  C  A  Q  L  F  L  V  I  T  Q  E  S  I  P  *  Y  C  N  I  H  L  Y  C  S  L  Q  R  T  N  P  C  L  M  L  W  E  K  V  *  N  C  V  Y  N  V  I  F  L  I  M  R  Q  S  F  S  R  L  P  *  S  L  T  C  V  K  L  Q  V  L  D  E  V  I  V  T  I  L  C  A  C  G  * </second_frame>
            <third_frame>   E  A  G  H  A  V  V  G  T  A  V  A  N  L  L  S  G  Q  P  R  V  E  :  K  L  S  I  L  P  R  S  G  G  A  L  G  F  T  Y  I  P  P  T  N  E  D  R  Y  L  L  F  V  D  E  L  R  G  R  L  V  T  L  L  G  G  R  A  A  E  E  V  L  Y  S  G  R  V  S  T  G  A  L  D  D  I  R  R  A  T  D  M  A  Y  K  A  V  A  E  Y  G  L  S  Q  T  I  G  P  I  S  V  A  T  L  S  G  G  G  M  D  D  G  G  S  M  S  W  G  R  D  Q  :  G  H  L  V  D  L  V  Q  R  E  V  K  A  L  L  Q  S  A  L  D  I  A  L  C  V  V  R  A  N  P  K  V  L  E  G  L  G  A  Q  L  E   : E  N  E  K  V  E  G  E  Q  L  Q  E  W  L  S  M  V  V  A  P  A  E  L  N  F  F  I  K  G  K  E  G  S  L  L  P  L  Q  A  G  S  G  *  Q  K  V  Q  A  *  P  S  Q  Q  S  T  K  T  N  F  E  *  G  F  P  R  L  H  L  C  S  L  G  K  Q  S  Y  I  P  E  P  D  G  H  H  L  L  A  S  R  Q  R  D  F  A  C  V  S  K  V  N  *  Q  L  L  N  S  Y  K  H  H  C  Y  I  P  R  S  Q  I  V  N  S  K  R  R  H  A  Q  K  I  *  P  R  V  S  W  F  S  R  G  E  M  K  I  G  S  *  S  E  *  C  L  L  V  F  S  S  T  S  L  V  H  V  P  N  Y  S  *  *  L  H  K  N  Q  Y  L  N  I  V  I  Y  I  C  T  A  A  Y  K  E  L  I  H  V  *  C  C  G  R  R  C  E  T  V  Y  T  M  *  S  F  *  L  *  D  K  V  S  V  G  C  H  N  L  *  L  V  *  N  Y  K  Y  W  M  R  *  *  *  Q  F  F  V  L  V  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0008G21.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52442" stop="52507"/>
                    <exon start="53825" stop="54145"/>
                    <exon start="54280" stop="54403"/>
                    <exon start="54889" stop="55016"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAGHAVVGTAVANLLSGQPRVEKLSILPRSGGALGFTYIPPTNEDRYLLFVDELRGRLVTLLGGRAAEEVLYSGRVSTGALDDIRRATDMAYKAVAEYGLSQTIGPISVATLSGGGMDDGGSMSWGRDQGHLVDLVQREVKALLQSALDIALCVVRANPKVLEGLGAQLEENEKVEGEQLQEWLSMVVAPAELNFFIKGKEGSLLPLQAGSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="69497" PGL_stop="66577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69497" e_stop="69411"/>
            <exon e_start="69067" e_stop="68879"/>
            <exon e_start="67357" e_stop="66577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69497" e_stop="69411" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69410" i_stop="69068" i_length="343"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69067" e_stop="68879" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68878" i_stop="67358" i_length="1521"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67357" e_stop="66577" e_length="781"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69497" stop="69411"/>
              <exon start="69067" stop="68879"/>
              <exon start="67357" stop="67037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69496" stop="69411"/>
              <exon start="69067" stop="68879"/>
              <exon start="67357" stop="66946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69482" stop="69411"/>
              <exon start="69067" stop="68879"/>
              <exon start="67357" stop="66938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69442" stop="69411"/>
              <exon start="69067" stop="68879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69437" stop="69411"/>
              <exon start="69067" stop="68879"/>
              <exon start="67357" stop="66858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69437" stop="69411"/>
              <exon start="69067" stop="68879"/>
              <exon start="67357" stop="66864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69437" stop="69411"/>
              <exon start="69067" stop="68879"/>
              <exon start="67357" stop="66970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69067" stop="68879"/>
              <exon start="67357" stop="66856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69048" stop="68879"/>
              <exon start="67357" stop="66990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68946" stop="68879"/>
              <exon start="67357" stop="66744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68946" stop="68879"/>
              <exon start="67357" stop="66746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67322" stop="66895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67257" stop="66577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCAAAAATCTTATATAGAAAAAACTCTTCTCCAACATTTCGAAACTCCATTGTTTCTCTTTCTAAAGCTTTCTCTCACCTCCCAG : GTTTTAATACAGAGAATTGAAGTTATGGGGAATAGAGTGGATCATGAGTACGATTACTTGTTTAAGATCGTGTTGATTGGTGATTCTGGAGTTGGAAAATCGAACATTCTGTCTAGGTTTACGCGAAATGAGTTCTGTTTGGAGTCAAAATCTACTATTGGAGTTGAGTTCGCCACTAGAACTCTTCAG : GTTGAGGGAAAGACAGTCAAGGCCCAAATATGGGACACTGCAGGCCAAGAACGGTACCGAGCCATTACCAGTGCTTATTACAGAGGAGCAGTTGGTGCACTCCTTGTTTATGACATAACAAAGGGACAAACATTCGACAATGTTCAAAGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCTAACATTGTCATTATGATGGCTGGAAACAAGTCCGACCTTAACCACCTTCGAGCAGTCTCTGAGCAGGATGGTCAAAATTTAGCTGAGAAGGAAGGACTGTCATTTCTTGAGACATCGGCATTGGAAGCAGTCAACGTAGATAAGGCTTTTCAGACTATACTAACCGAGATATACCATATCATAAGCAAGAAGGCGCTGGCTGCACAAGCAGCAGCCACAACCACTACTCTTCCTGGTCAGGGTACAACCATCAATGTTAATGACACCTCTGATAATGTGAAGAGAGGCTGCTGTTCTACCTGAGTTAAAAAAGTTTGAACAAGGAAACGAGATTCGGTATATTTAAATTTTTTTGGTTTATTTTACATTATTCATCAGAGCAAGAGATGTAGATTACTTTCTTGATTATACAAGAGAAAGGGCTTGTGAATGTTAATTGTCCTAGTGATTTAGGAAAGATCTATTCTTCATGTGGTGTACTGTTTAACTATTTTCTTTTAGCTTATAAGAAGAGATTAGCTTATCTAATATCTTCCCAGATACTTGTTACTATACAGGAGATTCAATTAAATTCTTGCATCTTCATCTGTATTATTTT</gDNA_template>
            <first_frame> H  Q  K  S  Y  I  E  K  T  L  L  Q  H  F  E  T  P  L  F  L  F  L  K  L  S  L  T  S  Q  :  V  L  I  Q  R  I  E  V  M  G  N  R  V  D  H  E  Y  D  Y  L  F  K  I  V  L  I  G  D  S  G  V  G  K  S  N  I  L  S  R  F  T  R  N  E  F  C  L  E  S  K  S  T  I  G  V  E  F  A  T  R  T  L  Q  :  V  E  G  K  T  V  K  A  Q  I  W  D  T  A  G  Q  E  R  Y  R  A  I  T  S  A  Y  Y  R  G  A  V  G  A  L  L  V  Y  D  I  T  K  G  Q  T  F  D  N  V  Q  R  W  L  R  E  L  R  D  H  A  D  S  N  I  V  I  M  M  A  G  N  K  S  D  L  N  H  L  R  A  V  S  E  Q  D  G  Q  N  L  A  E  K  E  G  L  S  F  L  E  T  S  A  L  E  A  V  N  V  D  K  A  F  Q  T  I  L  T  E  I  Y  H  I  I  S  K  K  A  L  A  A  Q  A  A  A  T  T  T  T  L  P  G  Q  G  T  T  I  N  V  N  D  T  S  D  N  V  K  R  G  C  C  S  T  *  V  K  K  V  *  T  R  K  R  D  S  V  Y  L  N  F  F  G  L  F  Y  I  I  H  Q  S  K  R  C  R  L  L  S  *  L  Y  K  R  K  G  L  *  M  L  I  V  L  V  I  *  E  R  S  I  L  H  V  V  Y  C  L  T  I  F  F  *  L  I  R  R  D  *  L  I  *  Y  L  P  R  Y  L  L  L  Y  R  R  F  N  *  I  L  A  S  S  S  V  L  F  </first_frame>
            <second_frame>  T  K  N  L  I  *  K  K  L  F  S  N  I  S  K  L  H  C  F  S  F  *  S  F  L  S  P  P  R :   F  *  Y  R  E  L  K  L  W  G  I  E  W  I  M  S  T  I  T  C  L  R  S  C  *  L  V  I  L  E  L  E  N  R  T  F  C  L  G  L  R  E  M  S  S  V  W  S  Q  N  L  L  L  E  L  S  S  P  L  E  L  F  R :   L  R  E  R  Q  S  R  P  K  Y  G  T  L  Q  A  K  N  G  T  E  P  L  P  V  L  I  T  E  E  Q  L  V  H  S  L  F  M  T  *  Q  R  D  K  H  S  T  M  F  K  G  G  S  E  N  *  E  T  M  Q  I  L  T  L  S  L  *  W  L  E  T  S  P  T  L  T  T  F  E  Q  S  L  S  R  M  V  K  I  *  L  R  R  K  D  C  H  F  L  R  H  R  H  W  K  Q  S  T  *  I  R  L  F  R  L  Y  *  P  R  Y  T  I  S  *  A  R  R  R  W  L  H  K  Q  Q  P  Q  P  L  L  F  L  V  R  V  Q  P  S  M  L  M  T  P  L  I  M  *  R  E  A  A  V  L  P  E  L  K  K  F  E  Q  G  N  E  I  R  Y  I  *  I  F  L  V  Y  F  T  L  F  I  R  A  R  D  V  D  Y  F  L  D  Y  T  R  E  R  A  C  E  C  *  L  S  *  *  F  R  K  D  L  F  F  M  W  C  T  V  *  L  F  S  F  S  L  *  E  E  I  S  L  S  N  I  F  P  D  T  C  Y  Y  T  G  D  S  I  K  F  L  H  L  H  L  Y  Y  F </second_frame>
            <third_frame>   P  K  I  L  Y  R  K  N  S  S  P  T  F  R  N  S  I  V  S  L  S  K  A  F  S  H  L  P   : G  F  N  T  E  N  *  S  Y  G  E  *  S  G  S  *  V  R  L  L  V  *  D  R  V  D  W  *  F  W  S  W  K  I  E  H  S  V  *  V  Y  A  K  *  V  L  F  G  V  K  I  Y  Y  W  S  *  V  R  H  *  N  S  S   : G  *  G  K  D  S  Q  G  P  N  M  G  H  C  R  P  R  T  V  P  S  H  Y  Q  C  L  L  Q  R  S  S  W  C  T  P  C  L  *  H  N  K  G  T  N  I  R  Q  C  S  K  V  A  P  R  I  E  R  P  C  R  F  *  H  C  H  Y  D  G  W  K  Q  V  R  P  *  P  P  S  S  S  L  *  A  G  W  S  K  F  S  *  E  G  R  T  V  I  S  *  D  I  G  I  G  S  S  Q  R  R  *  G  F  S  D  Y  T  N  R  D  I  P  Y  H  K  Q  E  G  A  G  C  T  S  S  S  H  N  H  Y  S  S  W  S  G  Y  N  H  Q  C  *  *  H  L  *  *  C  E  E  R  L  L  F  Y  L  S  *  K  S  L  N  K  E  T  R  F  G  I  F  K  F  F  W  F  I  L  H  Y  S  S  E  Q  E  M  *  I  T  F  L  I  I  Q  E  K  G  L  V  N  V  N  C  P  S  D  L  G  K  I  Y  S  S  C  G  V  L  F  N  Y  F  L  L  A  Y  K  K  R  L  A  Y  L  I  S  S  Q  I  L  V  T  I  Q  E  I  Q  L  N  S  C  I  F  I  C  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0008G21.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69497" stop="69411"/>
                    <exon start="69067" stop="68879"/>
                    <exon start="67357" stop="66872"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HQKSYIEKTLLQHFETPLFLFLKLSLTSQVLIQRIEVMGNRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKGQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEQDGQNLAEKEGLSFLETSALEAVNVDKAFQTILTEIYHIISKKALAAQAAATTTTLPGQGTTINVNDTSDNVKRGCCST*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0008G21.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66782" stop="66579"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITFLIIQEKGLVNVNCPSDLGKIYSSCGVLFNYFLLAYKKRLAYLISSQILVTIQEIQLNSCIFICII</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="80545" PGL_stop="81077"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80545" e_stop="81077"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="80545" e_stop="81077" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80545" stop="81030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80546" stop="81077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292486" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGGTAAACAGAGTTTGGAAACAATATGCCTTCTGCTTGCATACAAAATCAAATATCCTGAAAACTTCTTTCTCTTGAGAGGAAATCATGAATGTGCTTCTATTAATCGAATTTATGGTTTCTATGATGAATGTAAGCGCCGATTCAATGTGAAGCTATGGAAATGCTTCACAGAATGTTTCAATTGTCTTCCCGTTGCTGCTCTCATAGATGAAAAAATACTGTGCATGCATGGTGGTCTTTCTCCAGATTTAACAAACTTGGATCAGATAAGAAATTTACCTCGTCCAACTGATGTTCCAGATTCTGGGTTGCTGTGTGATTTACTTTGGTCAGATCCTAGCCGGGAAGTTAAAGGTTGGGGAATGAATGATAGGGGAGTTTCATATACTTTTGGTCCTGATAAGGTTGCAGAATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCATGACTTAT</gDNA_template>
            <first_frame> V  V  N  R  V  W  K  Q  Y  A  F  C  L  H  T  K  S  N  I  L  K  T  S  F  S  *  E  E  I  M  N  V  L  L  L  I  E  F  M  V  S  M  M  N  V  S  A  D  S  M  *  S  Y  G  N  A  S  Q  N  V  S  I  V  F  P  L  L  L  S  *  M  K  K  Y  C  A  C  M  V  V  F  L  Q  I  *  Q  T  W  I  R  *  E  I  Y  L  V  Q  L  M  F  Q  I  L  G  C  C  V  I  Y  F  G  Q  I  L  A  G  K  L  K  V  G  E  *  M  I  G  E  F  H  I  L  L  V  L  I  R  L  Q  N  S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  R  P  *  L   </first_frame>
            <second_frame>  W  *  T  E  F  G  N  N  M  P  S  A  C  I  Q  N  Q  I  S  *  K  L  L  S  L  E  R  K  S  *  M  C  F  Y  *  S  N  L  W  F  L  *  *  M  *  A  P  I  Q  C  E  A  M  E  M  L  H  R  M  F  Q  L  S  S  R  C  C  S  H  R  *  K  N  T  V  H  A  W  W  S  F  S  R  F  N  K  L  G  S  D  K  K  F  T  S  S  N  *  C  S  R  F  W  V  A  V  *  F  T  L  V  R  S  *  P  G  S  *  R  L  G  N  E  *  *  G  S  F  I  Y  F  W  S  *  *  G  C  R  I  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  D  H  D  L  </second_frame>
            <third_frame>   G  K  Q  S  L  E  T  I  C  L  L  L  A  Y  K  I  K  Y  P  E  N  F  F  L  L  R  G  N  H  E  C  A  S  I  N  R  I  Y  G  F  Y  D  E  C  K  R  R  F  N  V  K  L  W  K  C  F  T  E  C  F  N  C  L  P  V  A  A  L  I  D  E  K  I  L  C  M  H  G  G  L  S  P  D  L  T  N  L  D  Q  I  R  N  L  P  R  P  T  D  V  P  D  S  G  L  L  C  D  L  L  W  S  D  P  S  R  E  V  K  G  W  G  M  N  D  R  G  V  S  Y  T  F  G  P  D  K  V  A  E  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  S  T  M  T  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0008G21.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80547" stop="81077"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVKLWKCFTECFNCLPVAALIDEKILCMHGGLSPDLTNLDQIRNLPRPTDVPDSGLLCDLLWSDPSREVKGWGMNDRGVSYTFGPDKVAEFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFSTMTY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 420 chains have been computed
$ 
$ memory statistics:
$ 486576 bytes spliced alignments in total
$ 182 spliced alignments have been stored
$ 2673 bytes was the average size of a spliced alignment
$ 18936 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 2104 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 456 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 17:29:30
-->
